Multimillion Atom Simulations and Visualization of Hypervelocity Impact Damage and Oxidation

DTIC Science & Technology

2004-01-01

MULTIMILLION ATOM SIMULATIONS AND VISUALIZATION OF HYPERVELOCITY IMPACT DAMAGE AND OXIDATION Priya Vashishta*, Rajiv K. Kalia, and Aiichiro Nakano...number. 1. REPORT DATE 2. REPORT TYPE 3. DATES COVERED 00 DEC 2004 N/A 4. TITLE AND SUBTITLE 5a. CONTRACT NUMBER Multimillion Atom Simulations And...Collaboratory for Advanced Computing and Simulations Department of Materials Science & Engineering, Department of Physics & Astronomy, Department of

The Collaboratory Notebook: A Networked Knowledge-Building Environment for Project Learning.

ERIC Educational Resources Information Center

O'Neill, D. Kevin; Gomez, Louis M.

The Collaboratory Notebook, developed as part of the Learning Through Collaborative Visualization Project (CoVis), is a networked, multimedia knowledge-building environment which has been designed to help students, teachers and scientists share inquiry over the boundaries of time and space. CoVis is an attempt to change the way that science is…

Connecting Distance Learning Communities to Research via Virtual Collaboratories: A Case Study from Library and Information Science

ERIC Educational Resources Information Center

Rebmann, Kristen

2012-01-01

This case study reports on patterns of participation in a virtual collaboratory organised around goals associated with the involvement of graduate students in research and writing projects. Traditionally, distance learning classrooms have been devoted to teaching content matter (in a virtual context) yet this case study reports on the use of…

Micromechanical Characterization and Texture Analysis of Direct Cast Titanium Alloys Strips

NASA Technical Reports Server (NTRS)

2000-01-01

This research was conducted to determine a post-processing technique to optimize mechanical and material properties of a number of Titanium based alloys and aluminides processed via Melt Overflow Solidification Technique (MORST). This technique was developed by NASA for the development of thin sheet titanium and titanium aluminides used in high temperature applications. The materials investigated in this study included conventional titanium alloy strips and foils, Ti-1100, Ti-24Al-11Nb (Alpha-2), and Ti-48Al-2Ta (Gamma). The methodology used included micro-characterization, heat-treatment, mechanical processing and mechanical testing. Characterization techniques included optical, electron microscopy, and x-ray texture analysis. The processing included heat-treatment and mechanical deformation through cold rolling. The initial as-cast materials were evaluated for their microstructure and mechanical properties. Different heat-treatment and rolling steps were chosen to process these materials. The properties were evaluated further and a processing relationship was established in order to obtain an optimum processing condition. The results showed that the as-cast material exhibited a Widmanstatten (fine grain) microstructure that developed into a microstructure with larger grains through processing steps. The texture intensity showed little change for all processing performed in this investigation.

A Novel Microcharacterization Technique in the Measurement of Strain and Orientation Gradient in Advanced Materials

NASA Technical Reports Server (NTRS)

Garmestai, H.; Harris, K.; Lourenco, L.

1997-01-01

Representation of morphology and evolution of the microstructure during processing and their relation to properties requires proper experimental techniques. Residual strains, lattice distortion, and texture (micro-texture) at the interface and the matrix of a layered structure or a functionally gradient material and their variation are among parameters important in materials characterization but hard to measure with present experimental techniques. Current techniques available to measure changes in interred material parameters (residual stress, micro-texture, microplasticity) produce results which are either qualitative or unreliable. This problem becomes even more complicated in the case of a temperature variation. These parameters affect many of the mechanical properties of advanced materials including stress-strain relation, ductility, creep, and fatigue. A review of some novel experimental techniques using recent advances in electron microscopy is presented here to measure internal stress, (micro)texture, interracial strength and (sub)grain formation and realignment. Two of these techniques are combined in the chamber of an Environmental Scanning Electron Microscope to measure strain and orientation gradients in advanced materials. These techniques which include Backscattered Kikuchi Diffractometry (BKD) and Microscopic Strain Field Analysis are used to characterize metallic and intermetallic matrix composites and superplastic materials. These techniques are compared with the more conventional x-ray diffraction and indentation techniques.

Smart instruments and the national collaboratory

NASA Technical Reports Server (NTRS)

Leiner, Barry M. (Editor)

1989-01-01

Here, we explore the process of scientific experimental investigation and ask what capabilities are required of the collaboratory to support such investigations. We first look at a number of examples of scientific research being conducted using remote instruments. We then examine the process of such research, asking at each stage what are the required capabilities. We finally integrate these results into a statement of the required set of capabilities needed to support scientific research in the future.

The RCSB PDB “Molecule of the Month”: Inspiring a Molecular View of Biology

PubMed Central

Goodsell, David S.; Dutta, Shuchismita; Zardecki, Christine; Voigt, Maria; Berman, Helen M.; Burley, Stephen K.

2015-01-01

The Research Collaboratory for Structural Bioinformatics (RCSB) Molecule of the Month series provides a curated introduction to the 3-D biomolecular structures available in the Protein Data Bank archive and the tools that are available at the RCSB website for accessing and exploring them. A variety of educational materials, such as articles, videos, posters, hands-on activities, lesson plans, and curricula, build on this series for use in a variety of educational settings as a general introduction to key topics, such as enzyme action, protein synthesis, and viruses. The series and associated educational materials are freely available at www.rcsb.org. PMID:25942442

The RCSB PDB "Molecule of the Month": Inspiring a Molecular View of Biology.

PubMed

Goodsell, David S; Dutta, Shuchismita; Zardecki, Christine; Voigt, Maria; Berman, Helen M; Burley, Stephen K

2015-05-01

The Research Collaboratory for Structural Bioinformatics (RCSB) Molecule of the Month series provides a curated introduction to the 3-D biomolecular structures available in the Protein Data Bank archive and the tools that are available at the RCSB website for accessing and exploring them. A variety of educational materials, such as articles, videos, posters, hands-on activities, lesson plans, and curricula, build on this series for use in a variety of educational settings as a general introduction to key topics, such as enzyme action, protein synthesis, and viruses. The series and associated educational materials are freely available at www.rcsb.org.

Pragmatic clinical trials embedded in healthcare systems: generalizable lessons from the NIH Collaboratory.

PubMed

Weinfurt, Kevin P; Hernandez, Adrian F; Coronado, Gloria D; DeBar, Lynn L; Dember, Laura M; Green, Beverly B; Heagerty, Patrick J; Huang, Susan S; James, Kathryn T; Jarvik, Jeffrey G; Larson, Eric B; Mor, Vincent; Platt, Richard; Rosenthal, Gary E; Septimus, Edward J; Simon, Gregory E; Staman, Karen L; Sugarman, Jeremy; Vazquez, Miguel; Zatzick, Douglas; Curtis, Lesley H

2017-09-18

The clinical research enterprise is not producing the evidence decision makers arguably need in a timely and cost effective manner; research currently involves the use of labor-intensive parallel systems that are separate from clinical care. The emergence of pragmatic clinical trials (PCTs) poses a possible solution: these large-scale trials are embedded within routine clinical care and often involve cluster randomization of hospitals, clinics, primary care providers, etc. Interventions can be implemented by health system personnel through usual communication channels and quality improvement infrastructure, and data collected as part of routine clinical care. However, experience with these trials is nascent and best practices regarding design operational, analytic, and reporting methodologies are undeveloped. To strengthen the national capacity to implement cost-effective, large-scale PCTs, the Common Fund of the National Institutes of Health created the Health Care Systems Research Collaboratory (Collaboratory) to support the design, execution, and dissemination of a series of demonstration projects using a pragmatic research design. In this article, we will describe the Collaboratory, highlight some of the challenges encountered and solutions developed thus far, and discuss remaining barriers and opportunities for large-scale evidence generation using PCTs. A planning phase is critical, and even with careful planning, new challenges arise during execution; comparisons between arms can be complicated by unanticipated changes. Early and ongoing engagement with both health care system leaders and front-line clinicians is critical for success. There is also marked uncertainty when applying existing ethical and regulatory frameworks to PCTS, and using existing electronic health records for data capture adds complexity.

First evidence of tyre debris characterization at the nanoscale by focused ion beam

DOE Office of Scientific and Technical Information (OSTI.GOV)

Milani, M.; Pucillo, F.P.; Ballerini, M.

2004-07-15

In this paper, we present a novel technique for the nanoscale characterization of the outer and inner structure of tyre debris. Tyre debris is produced by the normal wear of tyres. In previous studies, the microcharacterization and identification were performed by analytical electron microscopy. This study is a development of the characterization of surface and microstructure of tyre debris. For the first time, tyre debris was analysed by focused ion beam (FIB), a technique with 2- to 5-nm resolution that does not require any sample preparation. We studied tyre debris produced in the laboratory. We made electron and ionic imagingmore » of the surface of the material, and after a ionic cut, we studied the internal microstructure of the same sample. The tyre debris was analysed by FIB without any sample preparations unlike the case of scanning and transmission electron microscopy (SEM and TEM). Useful information was derived to improve detection and monitoring techniques of pollution by tyre degradation processes.« less

Promoting a structural view of biology for varied audiences: an overview of RCSB PDB resources and experiences.

PubMed

Dutta, Shuchismita; Zardecki, Christine; Goodsell, David S; Berman, Helen M

2010-10-01

The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) supports scientific research and education worldwide by providing an essential resource of information on biomolecular structures. In addition to serving as a deposition, data-processing and distribution center for PDB data, the RCSB PDB offers resources and online materials that different audiences can use to customize their structural biology instruction. These include resources for general audiences that present macromolecular structure in the context of a biological theme, method-based materials for researchers who take a more traditional approach to the presentation of structural science, and materials that mix theme-based and method-based approaches for educators and students. Through these efforts the RCSB PDB aims to enable optimal use of structural data by researchers, educators and students designing and understanding experiments in biology, chemistry and medicine, and by general users making informed decisions about their life and health.

Expanding Your Laboratory by Accessing Collaboratory Resources

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hoyt, David W.; Burton, Sarah D.; Peterson, Michael R.

2004-03-01

The Environmental Molecular Sciences Laboratory (EMSL) in Richland, Washington, is the home of a research facility setup by the United States Department of Energy (DOE). The facility is atypical because it houses over 100 cutting-edge research systems for the use of researchers all over the United States and the world. Access to the lab is requested through a peer-review proposal process and the scientists who use the facility are generally referred to as ‘users’. There are six main research facilities housed in EMSL, all of which host visiting researchers. Several of these facilities also participate in the EMSL Collaboratory, amore » remote access capability supported by EMSL operations funds. Of these, the High-Field Magnetic Resonance Facility (HFMRF) and Molecular Science Computing Facility (MSCF) have a significant number of their users performing remote work. The HFMRF in EMSL currently houses 12 NMR spectrometers that range in magnet field strength from 7.05T to 21.1T. Staff associated with the NMR facility offers scientific expertise in the areas of structural biology, solid-state materials/catalyst characterization, and magnetic resonance imaging (MRI) techniques. The way in which the HFMRF operates, with a high level of dedication to remote operation across the full suite of High-Field NMR spectrometers, has earned it the name “Virtual NMR Facility”. This review will focus on the operational aspects of remote research done in the High-Field Magnetic Resonance Facility and the computer tools that make remote experiments possible.« less

Developing accessible cyberinfrastructure-enabled knowledge communities in the national disability community: theory, practice, and policy.

PubMed

Myhill, William N; Cogburn, Derrick L; Samant, Deepti; Addom, Benjamin Kwasi; Blanck, Peter

2008-01-01

Since publication of the Atkins Commission report in 2003, the national scientific community has placed significant emphasis on developing cyberinfrastructure-enabled knowledge communities, which are designed to facilitate enhanced efficiency and collaboration in geographically distributed networks of researchers. This article suggests that the new cyberinfrastructure movement may not fully benefit those participants with disabilities, unless closer attention is paid to legal mandates and universal design principles. Many technology-enhanced learning communities provide geographically distributed collaboration opportunities that expand the inclusion of diverse peoples and help close the digital divide. However, to date, most collaboratory efforts have not emphasized the need for access among people with disabilities nor meeting minimum standards for technological accessibility. To address these concerns, this article reports on two pilot collaboratory studies that explore the role advanced information, communication, and collaboration technologies play in enhancing geographically distributed collaboration among specific research and applied networks within the national disability community. Universal design principles inform the design of the collaboratory and its use and our efforts to ensure access for all. Data for this article come from Web-based surveys, interviews, observations, computer logs, and detailed, mixed-methods accessibility testing. Emerging results suggest that with deliberate and systematic efforts, cyberinfrastructure can be more accessible and generate benefits among persons with disabilities. The authors provide lessons learned and recommendations for future research, policy, law, and practice.

Collaboratory=Collaborate+Laboratory: The Mid-Columbia STEM Education Collaboratory

DOE Office of Scientific and Technical Information (OSTI.GOV)

Willcuts, Meredith H.; Kennedy, Cathleen A.

Pacific Northwest National Laboratory created a network focused on collaboration in STEM education to design and deliver projects, resources, and professional learning opportunities in a testbed environment. How do you uncover and fill gaps in equitable access to high-quality science, technology, engineering, and math (STEM) education offerings in your local region? Where might you deploy strategies to improve STEM workforce preparation and increase public understanding of STEM-oriented issues? And how can you help to ensure that students, educators, parents, and the community are aware of these programs and know how to access them in schools, colleges, and community venues? Ifmore » you are the Pacific Northwest National Laboratory (PNNL), you take on the huge goal of designing and implementing an innovative STEM education collaboration project that impacts all levels of local education, both inside and outside of school settings. PNNL is one of the 17 national laboratories funded by the U.S. Department of Energy. Operated by Battelle, PNNL has a vested interest in preparing the next generation of scientists and engineers for their future careers, thus building a STEM-capable workforce and creating a STEM-literate community. One of Battelle’s core principles is a commitment to STEM education and its role in business competitiveness and quality of life. PNNL has been active in STEM education for decades, providing internships for future scientists, giving educators in-house lab experiences, and engaging its researchers in STEM outreach activities in classrooms and the community. The Collaboratory is a relatively recent outcome of Battelle’s longstanding efforts in STEM education. The original Collaboratory planning documents, developed by PNNL’s Office of STEM Education (OSE), state the objective to “design, implement, and mature a local STEM education collaboration zone that highlights the power of PNNL and Battelle to impact the educational ecosystem and serve as a model for amplifying and accelerating progress in addressing our STEM education and workforce challenges” (PNNL 2013). In other words, we (the OSE) sought to create a zone of collaboration in which members co-design and deliver STEM education programs, share findings and lessons learned from their experiences, and co-manage and sustain the organization. We started by identifying possible collaborators located nearby in the largely rural southeast corner of Washington State. Recognizing that our potential collaborators had differing norms, values, and relationships within the community, as well as their own areas of expertise and purpose, we convened representatives from K–12 public and private schools, higher education, community-based learning providers, and local business and industry to brainstorm a unified vision to resolve gaps in local STEM education needs. Through discussions with these collaborators, we started hunting for gaps where STEM efforts were lacking but a desire to improve existed. We gave ourselves permission to try things out and built a testbed space where we could experiment with new ideas, gather evidence of feasibility, and treat failures as constructive learning opportunities. Through this generative process and with seed funding from Battelle, inter-organizational teams now work together, both virtually and in real time, to develop, test, and deploy resources to support student success, educators’ effectiveness, and community engagement in STEM. Thus, the Mid-Columbia STEM Education Collaboratory (Collaboratory) was born. This is the story of our beginnings: our challenges, our lessons learned, and emerging indicators of success. For those interested in launching an education–business–community STEM learning ecosystem, we share our story.« less

78 FR 64973 - National Earthquake Prediction Evaluation Council (NEPEC)

Federal Register 2010, 2011, 2012, 2013, 2014

2013-10-30

... updates on past topics of discussion, including work with social and behavioral scientists on improving... probabilities; USGS collaborative work with the Collaboratory for Study of Earthquake Predictability (CSEP...

Promoting a structural view of biology for varied audiences: an overview of RCSB PDB resources and experiences

PubMed Central

Dutta, Shuchismita; Zardecki, Christine; Goodsell, David S.; Berman, Helen M.

2010-01-01

The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) supports scientific research and education worldwide by providing an essential resource of information on biomolecular structures. In addition to serving as a deposition, data-processing and distribution center for PDB data, the RCSB PDB offers resources and online materials that different audiences can use to customize their structural biology instruction. These include resources for general audiences that present macromolecular structure in the context of a biological theme, method-based materials for researchers who take a more traditional approach to the presentation of structural science, and materials that mix theme-based and method-based approaches for educators and students. Through these efforts the RCSB PDB aims to enable optimal use of structural data by researchers, educators and students designing and understanding experiments in biology, chemistry and medicine, and by general users making informed decisions about their life and health. PMID:20877496

Virtual Pediatric Hospital

MedlinePlus

... Assistant™ Last revised on February 22, 2017 Related Digital Libraries Pediatric GeneralPediatrics.com - the general pediatrician's view of the Internet PediatricEducation.org - a pediatric digital library and learning collaboratory intended to serve as a ...

Integrating electron microscopy into nanoscience and materials engineering programs

NASA Astrophysics Data System (ADS)

Cormia, Robert D.; Oye, Michael M.; Nguyen, Anh; Skiver, David; Shi, Meng; Torres, Yessica

2014-10-01

Preparing an effective workforce in high technology is the goal of both academic and industry training, and has been the engine that drives innovation and product development in the United States for over a century. During the last 50 years, technician training has comprised a combination of two-year academic programs, internships and apprentice training, and extensive On-the-Job Training (OJT). Recently, and especially in Silicon Valley, technicians have four-year college degrees, as well as relevant hands-on training. Characterization in general, and microscopy in particular, is an essential tool in process development, manufacturing and QA/QC, and failure analysis. Training for a broad range of skills and practice is challenging, especially for community colleges. Workforce studies (SRI/Boeing) suggest that even four year colleges often do not provide the relevant training and experience in laboratory skills, especially design of experiments and analysis of data. Companies in high-tech further report difficulty in finding skilled labor, especially with industry specific experience. Foothill College, in partnership with UCSC, SJSU, and NASA-Ames, has developed a microscopy training program embedded in a research laboratory, itself a partnership between university and government, providing hands-on experience in advanced instrumentation, experimental design and problem solving, with real-world context from small business innovators, in an environment called `the collaboratory'. The program builds on AFM-SEM training at Foothill, and provides affordable training in FE-SEM and TEM through a cost recovery model. In addition to instrument and engineering training, the collaboratory also supports academic and personal growth through a multiplayer social network of students, faculty, researchers, and innovators.

ESnet authentication services and trust federations

NASA Astrophysics Data System (ADS)

Muruganantham, Dhivakaran; Helm, Mike; Genovese, Tony

2005-01-01

ESnet provides authentication services and trust federation support for SciDAC projects, collaboratories, and other distributed computing applications. The ESnet ATF team operates the DOEGrids Certificate Authority, available to all DOE Office of Science programs, plus several custom CAs, including one for the National Fusion Collaboratory and one for NERSC. The secure hardware and software environment developed to support CAs is suitable for supporting additional custom authentication and authorization applications that your program might require. Seamless, secure interoperation across organizational and international boundaries is vital to collaborative science. We are fostering the development of international PKI federations by founding the TAGPMA, the American regional PMA, and the worldwide IGTF Policy Management Authority (PMA), as well as participating in European and Asian regional PMAs. We are investigating and prototyping distributed authentication technology that will allow us to support the "roaming scientist" (distributed wireless via eduroam), as well as more secure authentication methods (one-time password tokens).

The Future of Great Lakes Rivermouth Research

EPA Science Inventory

The Great Lakes Rivermouth Collaboratory, a group of scientists and stakeholders representing academics, federal and state agencies, and non-governmental organizations (NGOs) are developing a conceptual model that draws upon existing data sources to synthesize the "state of the s...

Application of modern autoradiography to nuclear forensic analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Parsons-Davis, Tashi; Knight, Kim; Fitzgerald, Marc

Modern autoradiography techniques based on phosphorimaging technology using image plates (IPs) and digital scanning can identify heterogeneities in activity distributions and reveal material properties, serving to inform subsequent analyses. Here, we have adopted these advantages for applications in nuclear forensics, the technical analysis of radioactive or nuclear materials found outside of legal control to provide data related to provenance, production history, and trafficking route for the materials. IP autoradiography is a relatively simple, non-destructive method for sample characterization that records an image reflecting the relative intensity of alpha and beta emissions from a two-dimensional surface. Such data are complementary tomore » information gathered from radiochemical characterization via bulk counting techniques, and can guide the application of other spatially resolved techniques such as scanning electron microscopy (SEM) and secondary ion mass spectrometry (SIMS). IP autoradiography can image large 2-dimenstional areas (up to 20 × 40 cm), with relatively low detection limits for actinides and other radioactive nuclides, and sensitivity to a wide dynamic range (10 5) of activity density in a single image. Distributions of radioactivity in nuclear materials can be generated with a spatial resolution of approximately 50 μm using IP autoradiography and digital scanning. While the finest grain silver halide films still provide the best possible resolution (down to ~10 μm), IP autoradiography has distinct practical advantages such as shorter exposure times, no chemical post-processing, reusability, rapid plate scanning, and automated image digitization. Sample preparation requirements are minimal, and the analytical method does not consume or alter the sample. These advantages make IP autoradiography ideal for routine screening of nuclear materials, and for the identification of areas of interest for subsequent micro-characterization methods. Here in this article we present a summary of our setup, as modified for nuclear forensic sample analysis and related research, and provide examples of data from select samples from the nuclear fuel cycle and historical nuclear test debris.« less

Application of modern autoradiography to nuclear forensic analysis

DOE PAGES

Parsons-Davis, Tashi; Knight, Kim; Fitzgerald, Marc; ...

2018-05-20

Modern autoradiography techniques based on phosphorimaging technology using image plates (IPs) and digital scanning can identify heterogeneities in activity distributions and reveal material properties, serving to inform subsequent analyses. Here, we have adopted these advantages for applications in nuclear forensics, the technical analysis of radioactive or nuclear materials found outside of legal control to provide data related to provenance, production history, and trafficking route for the materials. IP autoradiography is a relatively simple, non-destructive method for sample characterization that records an image reflecting the relative intensity of alpha and beta emissions from a two-dimensional surface. Such data are complementary tomore » information gathered from radiochemical characterization via bulk counting techniques, and can guide the application of other spatially resolved techniques such as scanning electron microscopy (SEM) and secondary ion mass spectrometry (SIMS). IP autoradiography can image large 2-dimenstional areas (up to 20 × 40 cm), with relatively low detection limits for actinides and other radioactive nuclides, and sensitivity to a wide dynamic range (10 5) of activity density in a single image. Distributions of radioactivity in nuclear materials can be generated with a spatial resolution of approximately 50 μm using IP autoradiography and digital scanning. While the finest grain silver halide films still provide the best possible resolution (down to ~10 μm), IP autoradiography has distinct practical advantages such as shorter exposure times, no chemical post-processing, reusability, rapid plate scanning, and automated image digitization. Sample preparation requirements are minimal, and the analytical method does not consume or alter the sample. These advantages make IP autoradiography ideal for routine screening of nuclear materials, and for the identification of areas of interest for subsequent micro-characterization methods. Here in this article we present a summary of our setup, as modified for nuclear forensic sample analysis and related research, and provide examples of data from select samples from the nuclear fuel cycle and historical nuclear test debris.« less

Application of modern autoradiography to nuclear forensic analysis.

PubMed

Parsons-Davis, Tashi; Knight, Kim; Fitzgerald, Marc; Stone, Gary; Caldeira, Lee; Ramon, Christina; Kristo, Michael

2018-05-01

Modern autoradiography techniques based on phosphorimaging technology using image plates (IPs) and digital scanning can identify heterogeneities in activity distributions and reveal material properties, serving to inform subsequent analyses. Here, we have adopted these advantages for applications in nuclear forensics, the technical analysis of radioactive or nuclear materials found outside of legal control to provide data related to provenance, production history, and trafficking route for the materials. IP autoradiography is a relatively simple, non-destructive method for sample characterization that records an image reflecting the relative intensity of alpha and beta emissions from a two-dimensional surface. Such data are complementary to information gathered from radiochemical characterization via bulk counting techniques, and can guide the application of other spatially resolved techniques such as scanning electron microscopy (SEM) and secondary ion mass spectrometry (SIMS). IP autoradiography can image large 2-dimenstional areas (up to 20×40cm), with relatively low detection limits for actinides and other radioactive nuclides, and sensitivity to a wide dynamic range (10 5 ) of activity density in a single image. Distributions of radioactivity in nuclear materials can be generated with a spatial resolution of approximately 50μm using IP autoradiography and digital scanning. While the finest grain silver halide films still provide the best possible resolution (down to ∼10μm), IP autoradiography has distinct practical advantages such as shorter exposure times, no chemical post-processing, reusability, rapid plate scanning, and automated image digitization. Sample preparation requirements are minimal, and the analytical method does not consume or alter the sample. These advantages make IP autoradiography ideal for routine screening of nuclear materials, and for the identification of areas of interest for subsequent micro-characterization methods. In this paper we present a summary of our setup, as modified for nuclear forensic sample analysis and related research, and provide examples of data from select samples from the nuclear fuel cycle and historical nuclear test debris. Copyright © 2018 Elsevier B.V. All rights reserved.

76 FR 13649 - National Institute of Allergy and Infectious Diseases; Notice of Closed Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2011-03-14

... Allergy and Infectious Diseases; Notice of Closed Meeting Pursuant to section 10(d) of the Federal... clearly unwarranted invasion of personal privacy. Name of Committee: National Institute of Allergy and Infectious Diseases Special Emphasis Panel; Martin Delaney Collaboratory: Towards an HIV-1 Cure. Date: April...

76 FR 35227 - National Center for Complementary & Alternative Medicine; Notice of Closed Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2011-06-16

... Complementary & Alternative Medicine; Notice of Closed Meeting Pursuant to section 10(d) of the Federal Advisory... Alternative Medicine Special Emphasis Panel, NIH-HMO Collaboratory Coordinating Center (U54). Date: July 14... Scientific Review, National Center for Complementary, and Alternative Medicine, NIH, 6707 Democracy Blvd...

77 FR 31862 - National Center for Complementary & Alternative Medicine; Notice of Closed Meetings

Federal Register 2010, 2011, 2012, 2013, 2014

2012-05-30

... Complementary & Alternative Medicine; Notice of Closed Meetings Pursuant to section 10(d) of the Federal... Alternative Medicine Special Emphasis Panel; HCS Collaboratory Coordinating Center (U54). Date: July 9, 2012... Scientific Review, National Center for Complementary and Alternative Medicine, NIH, 6707 Democracy Blvd...

Dynamic response of tapered optical multimode fiber coated with carbon nanotubes for ethanol sensing application.

PubMed

Shabaneh, Arafat; Girei, Saad; Arasu, Punitha; Mahdi, Mohd; Rashid, Suraya; Paiman, Suriati; Yaacob, Mohd

2015-05-04

Ethanol is a highly combustible chemical universally designed for biomedical applications. In this paper, optical sensing performance of tapered multimode fiber tip coated with carbon nanotube (CNT) thin film towards aqueous ethanol with different concentrations is investigated. The tapered optical multimode fiber tip is coated with CNT using drop-casting technique and is annealed at 70 °C to enhance the binding of the nanomaterial to the silica fiber tip. The optical fiber tip and the CNT sensing layer are micro-characterized using FESEM and Raman spectroscopy techniques. When the developed sensor was exposed to different concentrations of ethanol (5% to 80%), the sensor reflectance reduced proportionally. The developed sensors showed high sensitivity, repeatability and fast responses (<55 s) towards ethanol.

Dynamic Response of Tapered Optical Multimode Fiber Coated with Carbon Nanotubes for Ethanol Sensing Application

PubMed Central

Shabaneh, Arafat; Girei, Saad; Arasu, Punitha; Mahdi, Mohd; Rashid, Suraya; Paiman, Suriati; Yaacob, Mohd

2015-01-01

Ethanol is a highly combustible chemical universally designed for biomedical applications. In this paper, optical sensing performance of tapered multimode fiber tip coated with carbon nanotube (CNT) thin film towards aqueous ethanol with different concentrations is investigated. The tapered optical multimode fiber tip is coated with CNT using drop-casting technique and is annealed at 70 °C to enhance the binding of the nanomaterial to the silica fiber tip. The optical fiber tip and the CNT sensing layer are micro-characterized using FESEM and Raman spectroscopy techniques. When the developed sensor was exposed to different concentrations of ethanol (5% to 80%), the sensor reflectance reduced proportionally. The developed sensors showed high sensitivity, repeatability and fast responses (<55 s) towards ethanol. PMID:25946634

Interdisciplinary Intellect: HASTAC and the Commitment to Encourage Collective Intelligence

ERIC Educational Resources Information Center

Singletary, Kimberly Alecia

2012-01-01

This article explores the role of the Humanities, Arts, Science, and Technology Advanced Collaboratory (HASTAC) in facilitating and encouraging a collaborative community of junior and senior scholars on issues of technology and humanistic learning. As a result of its emphasis on collaboration and discussion, HASTAC encourages a form of collective…

Structure and Evolution of Scientific Collaboration Networks in a Modern Research Collaboratory

ERIC Educational Resources Information Center

Pepe, Alberto

2010-01-01

This dissertation is a study of scientific collaboration at the Center for Embedded Networked Sensing (CENS), a modern, multi-disciplinary, distributed laboratory involved in sensor network research. By use of survey research and network analysis, this dissertation examines the collaborative ecology of CENS in terms of three networks of…

Practicing What We Teach: Using Action Research to Learn about Teaching Action Research

ERIC Educational Resources Information Center

Brown, Barb; Dressler, Roswita; Eaton, Sarah Elaine; Jacobsen, Michele

2015-01-01

In this article, action research is explored as a process for instructor reflection, professional learning and collaboration. The context for the professional learning was the teaching of graduate level education courses in which action research, in conjunction with a cohort-based, collaboratory approach to learning, was used to facilitate…

Pain Research Forum: application of scientific social media frameworks in neuroscience.

PubMed

Das, Sudeshna; McCaffrey, Patricia G; Talkington, Megan W T; Andrews, Neil A; Corlosquet, Stéphane; Ivinson, Adrian J; Clark, Tim

2014-01-01

Social media has the potential to accelerate the pace of biomedical research through online collaboration, discussions, and faster sharing of information. Focused web-based scientific social collaboratories such as the Alzheimer Research Forum have been successful in engaging scientists in open discussions of the latest research and identifying gaps in knowledge. However, until recently, tools to rapidly create such communities and provide high-bandwidth information exchange between collaboratories in related fields did not exist. We have addressed this need by constructing a reusable framework to build online biomedical communities, based on Drupal, an open-source content management system. The framework incorporates elements of Semantic Web technology combined with social media. Here we present, as an exemplar of a web community built on our framework, the Pain Research Forum (PRF) (http://painresearchforum.org). PRF is a community of chronic pain researchers, established with the goal of fostering collaboration and communication among pain researchers. Launched in 2011, PRF has over 1300 registered members with permission to submit content. It currently hosts over 150 topical news articles on research; more than 30 active or archived forum discussions and journal club features; a webinar series; an editor-curated weekly updated listing of relevant papers; and several other resources for the pain research community. All content is licensed for reuse under a Creative Commons license; the software is freely available. The framework was reused to develop other sites, notably the Multiple Sclerosis Discovery Forum (http://msdiscovery.org) and StemBook (http://stembook.org). Web-based collaboratories are a crucial integrative tool supporting rapid information transmission and translation in several important research areas. In this article, we discuss the success factors, lessons learned, and ongoing challenges in using PRF as a driving force to develop tools for online collaboration in neuroscience. We also indicate ways these tools can be applied to other areas and uses.

The Pulsar Search Collaboratory: A Comprehensive Project for Students and Teachers

NASA Astrophysics Data System (ADS)

Rosen, Rachel; Heatherly, S.; McLauglin, M.; Lorimer, D.

2009-01-01

The National Radio Astronomy Observatory (NRAO) and West Virginia University (WVU) have partnered to improve the quality of science education in West Virginia high schools through the Pulsar Search Collaboratory (PSC). One of the primary goals of the PSC is to engage students in STEM (science, technology, engineering, and mathematics) and related fields by using information technology to conduct current scientific research, specifically searching for new pulsars. To this end, we also are improving rural teachers' knowledge of the nature of science, the importance of information technology to scientific discovery, and methodologies for incorporating inquiry-based education into the classroom. The PSC hopes to make school science more like the practice of science and to make science fun and interesting for high school students. In 2007, an international team of astronomers received 900 hours of time on the Green Bank Telescope (GBT) during the summer shutdown to search for new pulsars. In conjunction with this group, we applied for and received 300 hours of observing time on the GBT for the PSC students. Around the same time, we were awarded an NSF iTEST grant to fund the Pulsar Search Collaboratory (PSC) project. Over the past year, we have been working with colleagues in the WVU Department of Computer Science to develop a graphical interface through which the students will analyze pulsar search plots (see psrsearch.wvu.edu). We also initiated a robust processing pipeline on a cluster in the WVU Computer Science Department. The PSC started in earnest this summer with a three week workshop in Green Bank where the teachers attended an intensive astronomy mini-course and techniques on introducing astronomy into the classroom. The students joined their teachers for the third week and participated in various activities to teach them about radio astronomy, radio frequency interference, and pulsars.

The Tribal Lands Collaboratory: Building partnerships and developing tools to support local Tribal community response to climate change.

NASA Astrophysics Data System (ADS)

Jones, K. D.; Wee, B.; Kuslikis, A.

2015-12-01

Response of Tribal nations and Tribal communities to current and emerging climate change challenges requires active participation of stakeholders who have effective access to relevant data, information and analytical tools. The Tribal Lands Collaboratory (TLC), currently under development, is a joint effort between the American Indian Higher Education Consortium (AIHEC), the Environmental Systems Research Institute (Esri), and the National Ecological Observatory Network (NEON). The vision of the TLC is to create an integrative platform that enables coordination between multiple stakeholders (e.g. Tribal resource managers, Tribal College faculty and students, farmers, ranchers, and other local community members) to collaborate on locally relevant climate change issues. The TLC is intended to facilitate the transformation of data into actionable information that can inform local climate response planning. The TLC will provide the technical mechanisms to access, collect and analyze data from both internal and external sources (e.g. NASA's Giovanni climate data portal, Ameriflux or USA National Phenology Network) while also providing the social scaffolds to enable collaboration across Tribal communities and with members of the national climate change research community. The prototype project focuses on phenology, a branch of science focused on relationships between climate and the seasonal timing of biological phenomena. Monitoring changes in the timing and duration of phenological stages in plant and animal co­­­­mmunities on Tribal lands can provide insight to the direct impacts of climate change on culturally and economically significant Tribal resources . The project will leverage existing phenological observation protocols created by the USA-National Phenology Network and NEON to direct data collection efforts and will be tailored to the specific needs and concerns of the community. Phenology observations will be captured and managed within the Collaboratory environment where these data may then be correlated with regional climate data to investigate interactions between large-scale environmental changes and local impacts. Esri's Story Maps is a candidate mechanism for sharing of those findings among Tribal stakeholders.

Pain Research Forum: application of scientific social media frameworks in neuroscience

PubMed Central

Das, Sudeshna; McCaffrey, Patricia G.; Talkington, Megan W. T.; Andrews, Neil A.; Corlosquet, Stéphane; Ivinson, Adrian J.; Clark, Tim

2014-01-01

Background: Social media has the potential to accelerate the pace of biomedical research through online collaboration, discussions, and faster sharing of information. Focused web-based scientific social collaboratories such as the Alzheimer Research Forum have been successful in engaging scientists in open discussions of the latest research and identifying gaps in knowledge. However, until recently, tools to rapidly create such communities and provide high-bandwidth information exchange between collaboratories in related fields did not exist. Methods: We have addressed this need by constructing a reusable framework to build online biomedical communities, based on Drupal, an open-source content management system. The framework incorporates elements of Semantic Web technology combined with social media. Here we present, as an exemplar of a web community built on our framework, the Pain Research Forum (PRF) (http://painresearchforum.org). PRF is a community of chronic pain researchers, established with the goal of fostering collaboration and communication among pain researchers. Results: Launched in 2011, PRF has over 1300 registered members with permission to submit content. It currently hosts over 150 topical news articles on research; more than 30 active or archived forum discussions and journal club features; a webinar series; an editor-curated weekly updated listing of relevant papers; and several other resources for the pain research community. All content is licensed for reuse under a Creative Commons license; the software is freely available. The framework was reused to develop other sites, notably the Multiple Sclerosis Discovery Forum (http://msdiscovery.org) and StemBook (http://stembook.org). Discussion: Web-based collaboratories are a crucial integrative tool supporting rapid information transmission and translation in several important research areas. In this article, we discuss the success factors, lessons learned, and ongoing challenges in using PRF as a driving force to develop tools for online collaboration in neuroscience. We also indicate ways these tools can be applied to other areas and uses. PMID:24653693

ISTI Overview

DOE Office of Scientific and Technical Information (OSTI.GOV)

Eidenbenz, Stephan Johannes

2016-01-10

The Information Science & Technology Institute (ISTI) enables the execution of LANL’s institutional IS&T pillar through revitalization of technical IS&T areas, recruiting, and retention of IS&T staff. ISTI manages, organizes, and/or provides funding for (1) summer schools, (2) university collaborations, (3) workshops, (4) the IS&T seminar series, (5) program development, and (6) the visualization collaboratory at LARP all with a focus on IS&T.

Mobile Inquiry Learning in Sweden: Development Insights on Interoperability, Extensibility and Sustainability of the LETS GO Software System

ERIC Educational Resources Information Center

Vogel, Bahtijar; Kurti, Arianit; Milrad, Marcelo; Johansson, Emil; Müller, Maximilian

2014-01-01

This paper presents the overall lifecycle and evolution of a software system we have developed in relation to the "Learning Ecology through Science with Global Outcomes" (LETS GO) research project. One of the aims of the project is to support "open inquiry learning" using mobile science collaboratories that provide open…

The Pulsar Search Collaboratory: Discovery and Timing of Five New Pulsars

NASA Astrophysics Data System (ADS)

Rosen, R.; Swiggum, J.; McLaughlin, M. A.; Lorimer, D. R.; Yun, M.; Heatherly, S. A.; Boyles, J.; Lynch, R.; Kondratiev, V. I.; Scoles, S.; Ransom, S. M.; Moniot, M. L.; Cottrill, A.; Weaver, M.; Snider, A.; Thompson, C.; Raycraft, M.; Dudenhoefer, J.; Allphin, L.; Thorley, J.; Meadows, B.; Marchiny, G.; Liska, A.; O'Dwyer, A. M.; Butler, B.; Bloxton, S.; Mabry, H.; Abate, H.; Boothe, J.; Pritt, S.; Alberth, J.; Green, A.; Crowley, R. J.; Agee, A.; Nagley, S.; Sargent, N.; Hinson, E.; Smith, K.; McNeely, R.; Quigley, H.; Pennington, A.; Chen, S.; Maynard, T.; Loope, L.; Bielski, N.; McGough, J. R.; Gural, J. C.; Colvin, S.; Tso, S.; Ewen, Z.; Zhang, M.; Ciccarella, N.; Bukowski, B.; Novotny, C. B.; Gore, J.; Sarver, K.; Johnson, S.; Cunningham, H.; Collins, D.; Gardner, D.; Monteleone, A.; Hall, J.; Schweinhagen, R.; Ayers, J.; Jay, S.; Uosseph, B.; Dunkum, D.; Pal, J.; Dydiw, S.; Sterling, M.; Phan, E.

2013-05-01

We present the discovery and timing solutions of five new pulsars by students involved in the Pulsar Search Collaboratory, a NSF-funded joint program between the National Radio Astronomy Observatory and West Virginia University designed to excite and engage high-school students in Science, Technology, Engineering, and Mathematics (STEM) and related fields. We encourage students to pursue STEM fields by apprenticing them within a professional scientific community doing cutting edge research, specifically by teaching them to search for pulsars. The students are analyzing 300 hr of drift-scan survey data taken with the Green Bank Telescope at 350 MHz. These data cover 2876 deg2 of the sky. Over the course of five years, more than 700 students have inspected diagnostic plots through a web-based graphical interface designed for this project. The five pulsars discovered in the data have spin periods ranging from 3.1 ms to 4.8 s. Among the new discoveries are PSR J1926-1314, a long period, nulling pulsar; PSR J1821+0155, an isolated, partially recycled 33 ms pulsar; and PSR J1400-1438, a millisecond pulsar in a 9.5 day orbit whose companion is likely a white dwarf star.

Reusable Social Networking Capabilities for an Earth Science Collaboratory

NASA Astrophysics Data System (ADS)

Lynnes, C.; Da Silva, D.; Leptoukh, G. G.; Ramachandran, R.

2011-12-01

A vast untapped resource of data, tools, information and knowledge lies within the Earth science community. This is due to the fact that it is difficult to share the full spectrum of these entities, particularly their full context. As a result, most knowledge exchange is through person-to-person contact at meetings, email and journal articles, each of which can support only a limited level of detail. We propose the creation of an Earth Science Collaboratory (ESC): a framework that would enable sharing of data, tools, workflows, results and the contextual knowledge about these information entities. The Drupal platform is well positioned to provide the key social networking capabilities to the ESC. As a proof of concept of a rich collaboration mechanism, we have developed a Drupal-based mechanism for graphically annotating and commenting on results images from analysis workflows in the online Giovanni analysis system for remote sensing data. The annotations can be tagged and shared with others in the community. These capabilities are further supplemented by a Research Notebook capability reused from another online analysis system named Talkoot. The goal is a reusable set of modules that can integrate with variety of other applications either within Drupal web frameworks or at a machine level.

Statistical lessons learned for designing cluster randomized pragmatic clinical trials from the NIH Health Care Systems Collaboratory Biostatistics and Design Core.

PubMed

Cook, Andrea J; Delong, Elizabeth; Murray, David M; Vollmer, William M; Heagerty, Patrick J

2016-10-01

Pragmatic clinical trials embedded within health care systems provide an important opportunity to evaluate new interventions and treatments. Networks have recently been developed to support practical and efficient studies. Pragmatic trials will lead to improvements in how we deliver health care and promise to more rapidly translate research findings into practice. The National Institutes of Health (NIH) Health Care Systems Collaboratory was formed to conduct pragmatic clinical trials and to cultivate collaboration across research areas and disciplines to develop best practices for future studies. Through a two-stage grant process including a pilot phase (UH2) and a main trial phase (UH3), investigators across the Collaboratory had the opportunity to work together to improve all aspects of these trials before they were launched and to address new issues that arose during implementation. Seven Cores were created to address the various considerations, including Electronic Health Records; Phenotypes, Data Standards, and Data Quality; Biostatistics and Design Core; Patient-Reported Outcomes; Health Care Systems Interactions; Regulatory/Ethics; and Stakeholder Engagement. The goal of this article is to summarize the Biostatistics and Design Core's lessons learned during the initial pilot phase with seven pragmatic clinical trials conducted between 2012 and 2014. Methodological issues arose from the five cluster-randomized trials, also called group-randomized trials, including consideration of crossover and stepped wedge designs. We outlined general themes and challenges and proposed solutions from the pilot phase including topics such as study design, unit of randomization, sample size, and statistical analysis. Our findings are applicable to other pragmatic clinical trials conducted within health care systems. Pragmatic clinical trials using the UH2/UH3 funding mechanism provide an opportunity to ensure that all relevant design issues have been fully considered in order to reliably and efficiently evaluate new interventions and treatments. The integrity and generalizability of trial results can only be ensured if rigorous designs and appropriate analysis choices are an essential part of their research protocols. © The Author(s) 2016.

MICROCHARACTERIZATION OF ARSENIC- AND SELENIUM-BEARING PYRITE IN UPPER FREEPORT COAL, INDIANA COUNTY, PENNSYLVANIA.

USGS Publications Warehouse

Minkin, J.A.; Finkelman, R.B.; Thompson, C.L.; Chao, E.C.T.; Ruppert, L.F.; Blank, H.; Cecil, C.B.

1984-01-01

Optical and scanning electron microscope as well as electron and proton microprobe techniques have been used in a detailed investigation of the modes of occurrence of arsenic and selenium in pyrite in Upper Freeport coal from the Homer City area, Indiana County, Pennsylvania. Polished blocks were prepared from columnar samples of the coal bed to represent particular zones continuously from top to bottom. Initial selection of zones to be studied was based on chemical analysis of bench-channel samples. Microprobe data indicate that the highest concentrations of arsenic (as great as 1. 5 wt. %) are apparently in solid solution in pyrite within a limited stratigraphic interval of the coal bed. Smaller amounts of arsenic and selenium (concentrations up to approximately 0. 1 and 0. 2 wt. % respectively) were detected at isolated points within pyrite grains in various strata of the coal bed.

The climate visualizer: Sense-making through scientific visualization

NASA Astrophysics Data System (ADS)

Gordin, Douglas N.; Polman, Joseph L.; Pea, Roy D.

1994-12-01

This paper describes the design of a learning environment, called the Climate Visualizer, intended to facilitate scientific sense-making in high school classrooms by providing students the ability to craft, inspect, and annotate scientific visualizations. The theoretical back-ground for our design presents a view of learning as acquiring and critiquing cultural practices and stresses the need for students to appropriate the social and material aspects of practice when learning an area. This is followed by a description of the design of the Climate Visualizer, including detailed accounts of its provision of spatial and temporal context and the quantitative and visual representations it employs. A broader context is then explored by describing its integration into the high school science classroom. This discussion explores how visualizations can promote the creation of scientific theories, especially in conjunction with the Collaboratory Notebook, an embedded environment for creating and critiquing scientific theories and visualizations. Finally, we discuss the design trade-offs we have made in light of our theoretical orientation, and our hopes for further progress.

Using the Tools and Resources of the RCSB Protein Data Bank.

PubMed

Costanzo, Luigi Di; Ghosh, Sutapa; Zardecki, Christine; Burley, Stephen K

2016-09-07

The Protein Data Bank (PDB) archive is the worldwide repository of experimentally determined three-dimensional structures of large biological molecules found in all three kingdoms of life. Atomic-level structures of these proteins, nucleic acids, and complex assemblies thereof are central to research and education in molecular, cellular, and organismal biology, biochemistry, biophysics, materials science, bioengineering, ecology, and medicine. Several types of information are associated with each PDB archival entry, including atomic coordinates, primary experimental data, polymer sequence(s), and summary metadata. The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) serves as the U.S. data center for the PDB, distributing archival data and supporting both simple and complex queries that return results. These data can be freely downloaded, analyzed, and visualized using RCSB PDB tools and resources to gain a deeper understanding of fundamental biological processes, molecular evolution, human health and disease, and drug discovery. © 2016 by John Wiley & Sons, Inc. Copyright © 2016 John Wiley & Sons, Inc.

The RCSB protein data bank: integrative view of protein, gene and 3D structural information

PubMed Central

Rose, Peter W.; Prlić, Andreas; Altunkaya, Ali; Bi, Chunxiao; Bradley, Anthony R.; Christie, Cole H.; Costanzo, Luigi Di; Duarte, Jose M.; Dutta, Shuchismita; Feng, Zukang; Green, Rachel Kramer; Goodsell, David S.; Hudson, Brian; Kalro, Tara; Lowe, Robert; Peisach, Ezra; Randle, Christopher; Rose, Alexander S.; Shao, Chenghua; Tao, Yi-Ping; Valasatava, Yana; Voigt, Maria; Westbrook, John D.; Woo, Jesse; Yang, Huangwang; Young, Jasmine Y.; Zardecki, Christine; Berman, Helen M.; Burley, Stephen K.

2017-01-01

The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB, http://rcsb.org), the US data center for the global PDB archive, makes PDB data freely available to all users, from structural biologists to computational biologists and beyond. New tools and resources have been added to the RCSB PDB web portal in support of a ‘Structural View of Biology.’ Recent developments have improved the User experience, including the high-speed NGL Viewer that provides 3D molecular visualization in any web browser, improved support for data file download and enhanced organization of website pages for query, reporting and individual structure exploration. Structure validation information is now visible for all archival entries. PDB data have been integrated with external biological resources, including chromosomal position within the human genome; protein modifications; and metabolic pathways. PDB-101 educational materials have been reorganized into a searchable website and expanded to include new features such as the Geis Digital Archive. PMID:27794042

UNC Collaboratory Project: Overview

DTIC Science & Technology

1990-11-01

technical, and other expository documents. Crucial to our success has been the selection of driving problems whose solutions have been of significance not...systems, and with the growing necessity for "team science", we believe the time is right to select a new driving problem -- support for multiple...the WE computer system. The WE system includes sensors imbedded within it that record each users’ action These records include each menu selection

In Silico Docking of Small-Molecule Inhibitors to the Escherichia coli Type III Secretion System EscN ATPase

DTIC Science & Technology

2014-07-01

coordinates of the EscN protein (Zarivach et al., 2007) were downloaded in pdb file format from the Research Collaboratory for Structural Biology...catalytic activity. Two structurally related compounds were observed to adopt extended conformations in the active-site cleft and essentially...adopt a very compact conformation that occupied only one side of the cleft. Our goal was to determine the three-dimensional structures of the

University of Michigan lecture archiving and related activities of the U-M ATLAS Collaboratory Project

NASA Astrophysics Data System (ADS)

Herr, J.; Bhatnagar, T.; Goldfarb, S.; Irrer, J.; McKee, S.; Neal, H. A.

2008-07-01

Large scientific collaborations as well as universities have a growing need for multimedia archiving of meetings and courses. Collaborations need to disseminate training and news to their wide-ranging members, and universities seek to provide their students with more useful studying tools. The University of Michigan ATLAS Collaboratory Project has been involved in the recording and archiving of multimedia lectures since 1999. Our software and hardware architecture has been used to record events for CERN, ATLAS, many units inside the University of Michigan, Fermilab, the American Physical Society and the International Conference on Systems Biology at Harvard. Until 2006 our group functioned primarily as a tiny research/development team with special commitments to the archiving of certain ATLAS events. In 2006 we formed the MScribe project, using a larger scale, and highly automated recording system to record and archive eight University courses in a wide array of subjects. Several robotic carts are wheeled around campus by unskilled student helpers to automatically capture and post to the Web audio, video, slides and chalkboard images. The advances the MScribe project has made in automation of these processes, including a robotic camera operator and automated video processing, are now being used to record ATLAS Collaboration events, making them available more quickly than before and enabling the recording of more events.

Long Term Manipulations of Intact Microbial Mat Communities in a Greenhouse Collaboratory: Simulating Earth's Present and Past Field Environments

NASA Technical Reports Server (NTRS)

Bebout, Brad; DesMarais, David J.; Discipulo, Mykell; Embaye, Tsegereda; Garcia-Pichel, Ferran; Hogan, Mary; Jahnke, Linda L.; Keller, Richard M.; Miller, Scott R.; Prufert-Bebout, Leslie E.;

Current Results and Future Directions of the Pulsar Search Collaboratory

NASA Astrophysics Data System (ADS)

Heatherly, Sue Ann; Rosen, R.; McLaughlin, M.; Lorimer, D.

2011-01-01

The Pulsar Search Collaboratory (PSC) is a joint partnership between the National Radio Astronomy Observatory (NRAO) and West Virginia University (WVU). The ultimate goal of the PSC is to interest students in science, technology, engineering, mathematics (STEM) fields by engaging them in conducting authentic scientific research-specifically the search for new pulsars. Of the 33 schools in the original PSC program, 13 come from rural school districts; one third of these are from schools where over 50% participate in the Free/Reduced School Lunch program. We are reaching first generation college-goers. For students, the program succeeds in building confidence in students, rapport with the scientists involved in the project, and greater comfort with team-work. We see additional gains in girls, as they see themselves more as scientists after participating in the PSC program, which is an important predictor of success in STEM fields. The PSC has had several scientific successes as well. To date, PSC students have made two astronomical discoveries: a 4.8-s pulsar and bright radio burst of astrophysical origin, most likely from a sporadic neutron star. We will report on the status of the project including new evaluation data. We will also describe PSC-West, an experiment to involve schools in Illinois and Wisconsin using primarily online tools for professional development of teachers and coaching of students. Knowledge gained through our efforts with PSC-West will assist the PSC team in scaling up the project.

Long-Term Manipulations of Intact Microbial Mat Communities in a Greenhouse Collaboratory: Simulating Earth's Present and Past Field Environments

NASA Astrophysics Data System (ADS)

Bebout, Brad M.; Carpenter, Steven P.; Des Marais, David J.; Discipulo, Mykell; Embaye, Tsegereda; Garcia-Pichel, Ferran; Hoehler, Tori M.; Hogan, Mary; Jahnke, Linda L.; Keller, Richard M.; Miller, Scott R.; Prufert-Bebout, Leslie E.; Raleigh, Chris; Rothrock, Michael; Turk, Kendra

2002-12-01

Photosynthetic microbial mat communities were obtained from marine hypersaline saltern ponds, maintained in a greenhouse facility, and examined for the effects of salinity variations. Because these microbial mats are considered to be useful analogs of ancient marine communities, they offer insights about evolutionary events during the >3 billion year time interval wherein mats co-evolved with Earth's lithosphere and atmosphere. Although photosynthetic mats can be highly dynamic and exhibit extremely high activity, the mats in the present study have been maintained for >1 year with relatively minor changes. The major groups of microorganisms, as assayed using microscopic, genetic, and biomarker methodologies, are essentially the same as those in the original field samples. Field and greenhouse mats were similar with respect to rates of exchange of oxygen and dissolved inorganic carbon across the mat-water interface, both during the day and at night. Field and greenhouse mats exhibited similar rates of efflux of methane and hydrogen. Manipulations of salinity in the water overlying the mats produced changes in the community that strongly resemble those observed in the field. A collaboratory testbed and an array of automated features are being developed to support remote scientific experimentation with the assistance of intelligent software agents. This facility will permit teams of investigators the opportunity to explore ancient environmental conditions that are rare or absent today but that might have influenced the early evolution of these photosynthetic ecosystems.

Highlights from the Third Biennial Strategies for an HIV Cure Meeting: 14-16 November 2016, Bethesda, MD, USA.

PubMed

Lawrence, Diane; Kuo, Lillian; Church, Elizabeth; Poon, Betty; Smiley, Stephen; Sanders-Beer, Brigitte; Dawson, Liza; Salzwedel, Karl

2017-01-01

Since the first Strategies for an HIV Cure Meeting organised by the National Institute of Allergy and Infectious Diseases (NIAID) in 2012, one of the primary purposes of the meeting has been to facilitate communication and foster collaboration across the NIAID-funded Martin Delaney Collaboratories for HIV cure research (MDC), the broader HIV cure-related research field, and industry and community stakeholders. This year's meeting agenda reflected NIAID's increasing investment over the last 5 years in research to identify strategies for eradicating or achieving long-term remission of HIV infection. Overviews and research highlights were presented from each of the Martin Delaney Collaboratories, as well as projects funded through the Beyond HAART programme, the Consortia for Innovative AIDS Research in Nonhuman Primates (CIAR) programme, the ACTG and IMPAACT clinical trial networks, and the NIAID Vaccine Research Center in hopes of stimulating cross-talk and synergy among these and other programmes focused on HIV cure research. Aside from the oral presentations described here, the meeting also included 75 poster presentations. Finally, community engagement activities and community participation in the MDC was highlighted throughout the first day and in a special session on Day 2. This reflects NIAID's commitment to engage community partners in the earliest stages of research towards curative interventions through the MDC programme. The entire meeting is available for viewing via the NIH VideoCast website at: https://videocast.nih.gov/PastEvents.asp.

Great Lakes rivermouths: a primer for managers

USGS Publications Warehouse

Pebbles, Victoria; Larson, James; Seelbach, Paul; Pebbles, Victoria; Larson, James; Seelbach, Paul

2013-01-01

Between the North American Great Lakes and their tributaries are the places where the confluence of river and lake waters creates a distinct ecosystem: the rivermouth ecosystem. Human development has often centered around these rivermouths, in part, because they provide a rich array of ecosystem services. Not surprisingly, centuries of intense human activity have led to substantial pressures on, and alterations to, these ecosystems, often diminishing or degrading their ecological functions and associated ecological services. Many Great Lakes rivermouths are the focus of intense restoration efforts. For example, 36 of the active Great Lakes Areas of Concern (AOCs) are rivermouths or areas that include one or more rivermouths. Historically, research of rivermouth ecosystems has been piecemeal, focused on the Great Lakes proper or on the upper reaches of tributaries, with little direct study of the rivermouth itself. Researchers have been divided among disciplines, agencies and institutions; and they often work independently and use disparate venues to communicate their work. Management has also been fragmented with a focus on smaller, localized, sub-habitat units and socio-political or economic elements, rather than system-level consideration. This Primer presents the case for a more holistic approach to rivermouth science and management that can enable restoration of ecosystem services with multiple benefits to humans and the Great Lakes ecosystem. A conceptual model is presented with supporting text that describes the structures and processes common to all rivermouths, substantiating the case for treating these ecosystems as an identifiable class.1 Ecological services provided by rivermouths and changes in how humans value those services over time are illustrated through case studies of two Great Lakes rivermouths—the St. Louis River and the Maumee River. Specific ecosystem services are identified in italics throughout this Primer and follow definitions described by the Millennium Ecosystem Assessment (Table1). Collectively, this primer synthesizes existing information in a new way that aims to support management of rivermouths as distinct and important ecosystems. The development and management decisions made around rivermouths today will shape the future of these ecosystems, and the human communities within them, well into the future. 1 The information presented in this paper was derived from discussions and draft documents of the Great Lakes Rivermouth Collaboratory. The Great Lakes Rivermouth Collaboratory was established by the U.S. Geological Survey's Great Lakes Science Center (USGS-GLSC) in collaboration with the Great Lakes Commission to engage the Great Lakes scientific community in sharing and documenting knowledge about freshwater rivermouth ecosystems. For more information, see http://www.glc.org/habitat/Rivermouth-Collaboratory.html.

Review of the applications of x-ray refraction and the x-ray waveguide phenomenon to estimation of film structures.

PubMed

Hayashi, Kouichi

2010-12-01

Based on our previous work, I review the applications of x-ray refraction and the x-ray waveguide phenomenon to organic and inorganic thin films in the present paper. Under grazing incidence conditions, observations of refracted x-rays and guided x-rays due to the x-ray waveguide phenomenon provide information about thin film structures, and thus have potential as alternative methods to x-ray reflectivity. To date, we have measured the spectra of the refracted x-rays and guided x-rays from end faces of thin films using white incident x-ray beams, and utilized them for the determination of film density and thickness. Some of this work is summarized in the present paper. At the end of this paper, I describe our recent achievement in this field, namely the in situ measurement of guided x-rays during the film degradation process due to strong synchrotron radiation damage. Moreover, I discuss the perspective of the present technique from the viewpoint of micro-characterization and real-time estimation of thin films.

Toward single cell traction microscopy within 3D collagen matrices

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hall, Matthew S.; Long, Rong; Feng, Xinzeng

Mechanical interaction between the cell and its extracellular matrix (ECM) regulates cellular behaviors, including proliferation, differentiation, adhesion, and migration. Cells require the three-dimensional (3D) architectural support of the ECM to perform physiologically realistic functions. However, current understanding of cell–ECM and cell–cell mechanical interactions is largely derived from 2D cell traction force microscopy, in which cells are cultured on a flat substrate. 3D cell traction microscopy is emerging for mapping traction fields of single animal cells embedded in either synthetic or natively derived fibrous gels. We discuss here the development of 3D cell traction microscopy, its current limitations, and perspectives onmore » the future of this technology. Emphasis is placed on strategies for applying 3D cell traction microscopy to individual tumor cell migration within collagen gels. - Highlights: • Review of the current state of the art in 3D cell traction force microscopy. • Bulk and micro-characterization of remodelable fibrous collagen gels. • Strategies for performing 3D cell traction microscopy within collagen gels.« less

Addressing Health Disparities through Multi-institutional, Multidisciplinary Collaboratories

PubMed Central

Fleming, Erik S.; Perkins, James; Easa, David; Conde, José G.; Baker, Richard S.; Southerland, William M.; Dottin, Robert; Benabe, Julio E.; Ofili, Elizabeth O.; Bond, Vincent C.; McClure, Shelia A.; Sayre, Michael H.; Beanan, Maureen J.; Norris, Keith C.

2009-01-01

The national research leadership has recently become aware of the tremendous potential of translational research as an approach to address health disparities. The Research Centers in Minority Institutions (RCMI) Translational Research Network (RTRN) is a research network that supports multi-institutional, multidisciplinary collaboration with a focus on key diseases and conditions for which disproportionately adverse racial and ethnic health disparities exist. The RTRN is designed to facilitate the movement of scientific advances across the translational research spectrum by providing researchers at different institutions with the infrastructure and tools necessary to collaborate on interdisciplinary and transdisciplinary research projects relating to specific health outcomes for which major racial/ethnic disparities exist. In the past, the difficulty of overcoming the restrictions imposed by time and space have made it difficult to carry out this type of large-scale, multilevel collaboration efficiently. To address this formidable challenge, the RTRN will deploy a translational research cluster system that uses “cyber workspaces” to bring researchers with similar interests together by using online collaboratory technology. These virtual meeting environments will provide a number of tools, including videoconferences (seminars, works in progress, meetings); project management tools (WebCT, Microsoft Share Point); and posting areas for projects, concepts, and other research and educational activities. This technology will help enhance access to resources across institutions with a common mission, minimize many of the logistical hurdles that impede intellectual exchange, streamline the planning and implementation of innovative interdisciplinary research, and assess the use of protocols and practices to assist researchers in interacting across and within cyber workspaces. PMID:18646341

Addressing health disparities through multi-institutional, multidisciplinary collaboratories.

PubMed

Fleming, Erik S; Perkins, James; Easa, David; Conde, José G; Baker, Richard S; Southerland, William M; Dottin, Robert; Benabe, Julio E; Ofili, Elizabeth O; Bond, Vincent C; McClure, Shelia A; Sayre, Michael H; Beanan, Maureen J; Norris, Keith C

2008-01-01

The national research leadership has recently become aware of the tremendous potential of translational research as an approach to address health disparities. The Research Centers in Minority Institutions (RCMI) Translational Research Network (RTRN) is a research network that supports multi-institutional, multidisciplinary collaboration with a focus on key diseases and conditions for which disproportionately adverse racial and ethnic health disparities exist. The RTRN is designed to facilitate the movement of scientific advances across the translational research spectrum by providing researchers at different institutions with the infrastructure and tools necessary to collaborate on interdisciplinary and transdisciplinary research projects relating to specific health outcomes for which major racial/ethnic disparities exist. In the past, the difficulty of overcoming the restrictions imposed by time and space have made it difficult to carry out this type of large-scale, multilevel collaboration efficiently. To address this formidable challenge, the RTRN will deploy a translational research cluster system that uses "cyber workspaces" to bring researchers with similar interests together by using online collaboratory technology. These virtual meeting environments will provide a number of tools, including videoconferences (seminars, works in progress, meetings); project management tools (WebCT, Microsoft Share Point); and posting areas for projects, concepts, and other research and educational activities. This technology will help enhance access to resources across institutions with a common mission, minimize many of the logistical hurdles that impede intellectual exchange, streamline the planning and implementation of innovative interdisciplinary research, and assess the use of protocols and practices to assist researchers in interacting across and within cyber workspaces.

Earth System Grid II (ESG): Turning Climate Model Datasets Into Community Resources

NASA Astrophysics Data System (ADS)

Williams, D.; Middleton, D.; Foster, I.; Nevedova, V.; Kesselman, C.; Chervenak, A.; Bharathi, S.; Drach, B.; Cinquni, L.; Brown, D.; Strand, G.; Fox, P.; Garcia, J.; Bernholdte, D.; Chanchio, K.; Pouchard, L.; Chen, M.; Shoshani, A.; Sim, A.

2003-12-01

High-resolution, long-duration simulations performed with advanced DOE SciDAC/NCAR climate models will produce tens of petabytes of output. To be useful, this output must be made available to global change impacts researchers nationwide, both at national laboratories and at universities, other research laboratories, and other institutions. To this end, we propose to create a new Earth System Grid, ESG-II - a virtual collaborative environment that links distributed centers, users, models, and data. ESG-II will provide scientists with virtual proximity to the distributed data and resources that they require to perform their research. The creation of this environment will significantly increase the scientific productivity of U.S. climate researchers by turning climate datasets into community resources. In creating ESG-II, we will integrate and extend a range of Grid and collaboratory technologies, including the DODS remote access protocols for environmental data, Globus Toolkit technologies for authentication, resource discovery, and resource access, and Data Grid technologies developed in other projects. We will develop new technologies for (1) creating and operating "filtering servers" capable of performing sophisticated analyses, and (2) delivering results to users. In so doing, we will simultaneously contribute to climate science and advance the state of the art in collaboratory technology. We expect our results to be useful to numerous other DOE projects. The three-year R&D program will be undertaken by a talented and experienced team of computer scientists at five laboratories (ANL, LBNL, LLNL, NCAR, ORNL) and one university (ISI), working in close collaboration with climate scientists at several sites.

Collaboratory for the Study of Earthquake Predictability

NASA Astrophysics Data System (ADS)

Schorlemmer, D.; Jordan, T. H.; Zechar, J. D.; Gerstenberger, M. C.; Wiemer, S.; Maechling, P. J.

2006-12-01

Earthquake prediction is one of the most difficult problems in physical science and, owing to its societal implications, one of the most controversial. The study of earthquake predictability has been impeded by the lack of an adequate experimental infrastructure---the capability to conduct scientific prediction experiments under rigorous, controlled conditions and evaluate them using accepted criteria specified in advance. To remedy this deficiency, the Southern California Earthquake Center (SCEC) is working with its international partners, which include the European Union (through the Swiss Seismological Service) and New Zealand (through GNS Science), to develop a virtual, distributed laboratory with a cyberinfrastructure adequate to support a global program of research on earthquake predictability. This Collaboratory for the Study of Earthquake Predictability (CSEP) will extend the testing activities of SCEC's Working Group on Regional Earthquake Likelihood Models, from which we will present first results. CSEP will support rigorous procedures for registering prediction experiments on regional and global scales, community-endorsed standards for assessing probability-based and alarm-based predictions, access to authorized data sets and monitoring products from designated natural laboratories, and software to allow researchers to participate in prediction experiments. CSEP will encourage research on earthquake predictability by supporting an environment for scientific prediction experiments that allows the predictive skill of proposed algorithms to be rigorously compared with standardized reference methods and data sets. It will thereby reduce the controversies surrounding earthquake prediction, and it will allow the results of prediction experiments to be communicated to the scientific community, governmental agencies, and the general public in an appropriate research context.

How Big is Earth?

NASA Astrophysics Data System (ADS)

Thurber, Bonnie B.

2015-08-01

How Big is Earth celebrates the Year of Light. Using only the sunlight striking the Earth and a wooden dowel, students meet each other and then measure the circumference of the earth. Eratosthenes did it over 2,000 years ago. In Cosmos, Carl Sagan shared the process by which Eratosthenes measured the angle of the shadow cast at local noon when sunlight strikes a stick positioned perpendicular to the ground. By comparing his measurement to another made a distance away, Eratosthenes was able to calculate the circumference of the earth. How Big is Earth provides an online learning environment where students do science the same way Eratosthenes did. A notable project in which this was done was The Eratosthenes Project, conducted in 2005 as part of the World Year of Physics; in fact, we will be drawing on the teacher's guide developed by that project.How Big Is Earth? expands on the Eratosthenes project by providing an online learning environment provided by the iCollaboratory, www.icollaboratory.org, where teachers and students from Sweden, China, Nepal, Russia, Morocco, and the United States collaborate, share data, and reflect on their learning of science and astronomy. They are sharing their information and discussing their ideas/brainstorming the solutions in a discussion forum. There is an ongoing database of student measurements and another database to collect data on both teacher and student learning from surveys, discussions, and self-reflection done online.We will share our research about the kinds of learning that takes place only in global collaborations.The entrance address for the iCollaboratory is http://www.icollaboratory.org.

The global lambda visualization facility: An international ultra-high-definition wide-area visualization collaboratory

USGS Publications Warehouse

Leigh, J.; Renambot, L.; Johnson, Aaron H.; Jeong, B.; Jagodic, R.; Schwarz, N.; Svistula, D.; Singh, R.; Aguilera, J.; Wang, X.; Vishwanath, V.; Lopez, B.; Sandin, D.; Peterka, T.; Girado, J.; Kooima, R.; Ge, J.; Long, L.; Verlo, A.; DeFanti, T.A.; Brown, M.; Cox, D.; Patterson, R.; Dorn, P.; Wefel, P.; Levy, S.; Talandis, J.; Reitzer, J.; Prudhomme, T.; Coffin, T.; Davis, B.; Wielinga, P.; Stolk, B.; Bum, Koo G.; Kim, J.; Han, S.; Corrie, B.; Zimmerman, T.; Boulanger, P.; Garcia, M.

2006-01-01

The research outlined in this paper marks an initial global cooperative effort between visualization and collaboration researchers to build a persistent virtual visualization facility linked by ultra-high-speed optical networks. The goal is to enable the comprehensive and synergistic research and development of the necessary hardware, software and interaction techniques to realize the next generation of end-user tools for scientists to collaborate on the global Lambda Grid. This paper outlines some of the visualization research projects that were demonstrated at the iGrid 2005 workshop in San Diego, California.

An International Coastline Collaboratory to Broaden Scientific Impacts of a Subduction Zone Observatory

NASA Astrophysics Data System (ADS)

Bodin, P.

2015-12-01

A global Subduction Zone Observatory (SZO) presents an exciting opportunity to broaden involvement in scientific research and to ensure multidisciplinary impact. Most subduction zones feature dynamic interactions of the seafloor, the coastline, and the onshore environments also being perturbed by global climate change. Tectonic deformation, physical environment changes (temperature and chemistry), and resulting ecological shifts (intertidal population redistribution, etc.) are all basic observables for important scientific investigation. Yet even simple baseline studies like repeated transects of intertidal biological communities are rare. A coordinated program of such studies would document the local variability across time and spatial scales, permit comparisons with other subducting coastlines, and extend the reach and importance of other SZO studies. One goal is to document the patterns, and separate the component causes of, coastal uplift and subsidence and ecological response to a subduction zone earthquake using a database of pre-event biological and surveying observations. Observations would be directed by local scientists using students and trained volunteers as observers, under the auspices of local educational entities and using standardized sampling and reporting methods. The observations would be added to the global, Internet-accessible, database for use by the entire scientific community. Data acquisition and analysis supports the educational missions of local schools and universities, forming the basis for educational programs. All local programs would be coordinated by an international panel convened by the SZO. The facility would include a web-hosted lecture series and an annual web conference to aid organization and collaboration. Small grants could support more needy areas. This SZO collaboratory advances not only scientific literacy, but also multinational collaboration and scholarship, and (most importantly) produces important scientific results.

National Fusion Collaboratory: Grid Computing for Simulations and Experiments

NASA Astrophysics Data System (ADS)

Greenwald, Martin

2004-05-01

The National Fusion Collaboratory Project is creating a computational grid designed to advance scientific understanding and innovation in magnetic fusion research by facilitating collaborations, enabling more effective integration of experiments, theory and modeling and allowing more efficient use of experimental facilities. The philosophy of FusionGrid is that data, codes, analysis routines, visualization tools, and communication tools should be thought of as network available services, easily used by the fusion scientist. In such an environment, access to services is stressed rather than portability. By building on a foundation of established computer science toolkits, deployment time can be minimized. These services all share the same basic infrastructure that allows for secure authentication and resource authorization which allows stakeholders to control their own resources such as computers, data and experiments. Code developers can control intellectual property, and fair use of shared resources can be demonstrated and controlled. A key goal is to shield scientific users from the implementation details such that transparency and ease-of-use are maximized. The first FusionGrid service deployed was the TRANSP code, a widely used tool for transport analysis. Tools for run preparation, submission, monitoring and management have been developed and shared among a wide user base. This approach saves user sites from the laborious effort of maintaining such a large and complex code while at the same time reducing the burden on the development team by avoiding the need to support a large number of heterogeneous installations. Shared visualization and A/V tools are being developed and deployed to enhance long-distance collaborations. These include desktop versions of the Access Grid, a highly capable multi-point remote conferencing tool and capabilities for sharing displays and analysis tools over local and wide-area networks.

New results on the exotic galaxy `Speca' and discovering many more Specas with RAD@home network

NASA Astrophysics Data System (ADS)

Hota, Ananda; Croston, Judith H.; Ohyama, Youichi; Stalin, C. S.; Hardcastle, Martin J.; Konar, Chiranjib; Aravind, R. P.; Agarwal, Sheena M.; Dharmik Bhoga, Sai Arun; Dabhade, Pratik; Kamble, Amit A.; Mohanty, Pradeepta K.; Mukherjee, Alok; Pandey, Akansha V.; Patra, Alakananda; Pechetti, Renuka; Raut, Shrishail S.; Sushma, V.; Vaddi, Sravani; Verma, Nishchhal

We present the first report on an innovative new project named "RAD@home", a citizen-science research collaboratory built on free web-services like Facebook, Google, Skype, NASA Skyview, NED, TGSS etc.. This is the first of its kind in India, a zero-funded, zero-infrastructure, human-resource network to educate and directly involve in research, hundreds of science-educated under-graduate population of India, irrespective of their official employment and home-location with in the country. Professional international collaborators are involved in follow up observation and publication of the objects discovered by the collaboratory. We present here ten newly found candidate episodic radio galaxies, already proposed to GMRT, and ten more interesting cases which includes, bent-lobe radio galaxies located in new Mpc-scale filaments, likely tracing cosmological cluster accretion from the cosmic web. Two new Speca-like rare spiral-host large radio galaxies have also been been reported here. Early analyses from our follow up observations with the Subaru and XMM-Newton telescopes have revealed that Speca is likely a new entry to the cluster and is a fast rotating, extremely massive, star forming disk galaxy. Speca-like massive galaxies with giant radio lobes, are possibly remnants of luminous quasars in the early Universe or of first supermassive black holes with in first masssve galaxies. As discoveries of Speca-like galaxies did not require new data from big telescopes, but free archival radio-optical data, these early results demonstrate the discovery potential of RAD@home and how it can help resource-rich professionals, as well as demonstrate a model of academic-growth for resource-poor people in the underdeveloped regions via Internet.

Recent Achievements of the Collaboratory for the Study of Earthquake Predictability

NASA Astrophysics Data System (ADS)

Jackson, D. D.; Liukis, M.; Werner, M. J.; Schorlemmer, D.; Yu, J.; Maechling, P. J.; Zechar, J. D.; Jordan, T. H.

2015-12-01

Maria Liukis, SCEC, USC; Maximilian Werner, University of Bristol; Danijel Schorlemmer, GFZ Potsdam; John Yu, SCEC, USC; Philip Maechling, SCEC, USC; Jeremy Zechar, Swiss Seismological Service, ETH; Thomas H. Jordan, SCEC, USC, and the CSEP Working Group The Collaboratory for the Study of Earthquake Predictability (CSEP) supports a global program to conduct prospective earthquake forecasting experiments. CSEP testing centers are now operational in California, New Zealand, Japan, China, and Europe with 435 models under evaluation. The California testing center, operated by SCEC, has been operational since Sept 1, 2007, and currently hosts 30-minute, 1-day, 3-month, 1-year and 5-year forecasts, both alarm-based and probabilistic, for California, the Western Pacific, and worldwide. We have reduced testing latency, implemented prototype evaluation of M8 forecasts, and are currently developing formats and procedures to evaluate externally-hosted forecasts and predictions. These efforts are related to CSEP support of the USGS program in operational earthquake forecasting and a DHS project to register and test external forecast procedures from experts outside seismology. A retrospective experiment for the 2010-2012 Canterbury earthquake sequence has been completed, and the results indicate that some physics-based and hybrid models outperform purely statistical (e.g., ETAS) models. The experiment also demonstrates the power of the CSEP cyberinfrastructure for retrospective testing. Our current development includes evaluation strategies that increase computational efficiency for high-resolution global experiments, such as the evaluation of the Global Earthquake Activity Rate (GEAR) model. We describe the open-source CSEP software that is available to researchers as they develop their forecast models (http://northridge.usc.edu/trac/csep/wiki/MiniCSEP). We also discuss applications of CSEP infrastructure to geodetic transient detection and how CSEP procedures are being adapted to ground motion prediction experiments.

Micro-CT scan reveals an unexpected high-volume and interconnected pore network in a Cretaceous Sanagasta dinosaur eggshell.

PubMed

Hechenleitner, E Martín; Grellet-Tinner, Gerald; Foley, Matthew; Fiorelli, Lucas E; Thompson, Michael B

2016-03-01

The Cretaceous Sanagasta neosauropod nesting site (La Rioja, Argentina) was the first confirmed instance of extinct dinosaurs using geothermal-generated heat to incubate their eggs. The nesting strategy and hydrothermal activities at this site led to the conclusion that the surprisingly 7 mm thick-shelled eggs were adapted to harsh hydrothermal microenvironments. We used micro-CT scans in this study to obtain the first three-dimensional microcharacterization of these eggshells. Micro-CT-based analyses provide a robust assessment of gas conductance in fossil dinosaur eggshells with complex pore canal systems, allowing calculation, for the first time, of the shell conductance through its thickness. This novel approach suggests that the shell conductance could have risen during incubation to seven times more than previously estimated as the eggshell erodes. In addition, micro-CT observations reveal that the constant widening and branching of pore canals form a complex funnel-like pore canal system. Furthermore, the high density of pore canals and the presence of a lateral canal network in the shell reduce the risks of pore obstruction during the extended incubation of these eggs in a relatively highly humid and muddy nesting environment. © 2016 The Author(s).

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tagestad, Jerry D.; Bolte, John; Guzy, Michael

During this final year of the Pacific Northwest Regional Collaboratory we focused significantly on continuing the relationship between technical teams and government end-users. The main theme of the year was integration. This took the form of data integration via our web portal and integration of our technologies with the end users. The PNWRC's technical portfolio is based on EOS strategies, and focuses on 'applications of national priority: water management, invasive species, coastal management and ecological forecasting.' The products of our technical approaches have been well received by the community of focused end-users. The objective this year was to broaden thatmore » community and develop external support to continue and operationalize product development.« less

Biomedical informatics research network: building a national collaboratory to hasten the derivation of new understanding and treatment of disease.

PubMed

Grethe, Jeffrey S; Baru, Chaitan; Gupta, Amarnath; James, Mark; Ludaescher, Bertram; Martone, Maryann E; Papadopoulos, Philip M; Peltier, Steven T; Rajasekar, Arcot; Santini, Simone; Zaslavsky, Ilya N; Ellisman, Mark H

2005-01-01

Through support from the National Institutes of Health's National Center for Research Resources, the Biomedical Informatics Research Network (BIRN) is pioneering the use of advanced cyberinfrastructure for medical research. By synchronizing developments in advanced wide area networking, distributed computing, distributed database federation, and other emerging capabilities of e-science, the BIRN has created a collaborative environment that is paving the way for biomedical research and clinical information management. The BIRN Coordinating Center (BIRN-CC) is orchestrating the development and deployment of key infrastructure components for immediate and long-range support of biomedical and clinical research being pursued by domain scientists in three neuroimaging test beds.

The collaboratory for MS3D: a new cyberinfrastructure for the structural elucidation of biological macromolecules and their assemblies using mass spectrometry-based approaches.

PubMed

Yu, Eizadora T; Hawkins, Arie; Kuntz, Irwin D; Rahn, Larry A; Rothfuss, Andrew; Sale, Kenneth; Young, Malin M; Yang, Christine L; Pancerella, Carmen M; Fabris, Daniele

2008-11-01

Modern biomedical research is evolving with the rapid growth of diverse data types, biophysical characterization methods, computational tools and extensive collaboration among researchers spanning various communities and having complementary backgrounds and expertise. Collaborating researchers are increasingly dependent on shared data and tools made available by other investigators with common interests, thus forming communities that transcend the traditional boundaries of the single research laboratory or institution. Barriers, however, remain to the formation of these virtual communities, usually due to the steep learning curve associated with becoming familiar with new tools, or with the difficulties associated with transferring data between tools. Recognizing the need for shared reference data and analysis tools, we are developing an integrated knowledge environment that supports productive interactions among researchers. Here we report on our current collaborative environment, which focuses on bringing together structural biologists working in the area of mass spectrometric based methods for the analysis of tertiary and quaternary macromolecular structures (MS3D) called the Collaboratory for MS3D (C-MS3D). C-MS3D is a Web-portal designed to provide collaborators with a shared work environment that integrates data storage and management with data analysis tools. Files are stored and archived along with pertinent meta data in such a way as to allow file handling to be tracked (data provenance) and data files to be searched using keywords and modification dates. While at this time the portal is designed around a specific application, the shared work environment is a general approach to building collaborative work groups. The goal of this is to not only provide a common data sharing and archiving system, but also to assist in the building of new collaborations and to spur the development of new tools and technologies.

Recent Achievements of the Collaboratory for the Study of Earthquake Predictability

NASA Astrophysics Data System (ADS)

Jordan, T. H.; Liukis, M.; Werner, M. J.; Schorlemmer, D.; Yu, J.; Maechling, P. J.; Jackson, D. D.; Rhoades, D. A.; Zechar, J. D.; Marzocchi, W.

2016-12-01

The Collaboratory for the Study of Earthquake Predictability (CSEP) supports a global program to conduct prospective earthquake forecasting experiments. CSEP testing centers are now operational in California, New Zealand, Japan, China, and Europe with 442 models under evaluation. The California testing center, started by SCEC, Sept 1, 2007, currently hosts 30-minute, 1-day, 3-month, 1-year and 5-year forecasts, both alarm-based and probabilistic, for California, the Western Pacific, and worldwide. Our tests are now based on the hypocentral locations and magnitudes of cataloged earthquakes, but we plan to test focal mechanisms, seismic hazard models, ground motion forecasts, and finite rupture forecasts as well. We have increased computational efficiency for high-resolution global experiments, such as the evaluation of the Global Earthquake Activity Rate (GEAR) model, introduced Bayesian ensemble models, and implemented support for non-Poissonian simulation-based forecasts models. We are currently developing formats and procedures to evaluate externally hosted forecasts and predictions. CSEP supports the USGS program in operational earthquake forecasting and a DHS project to register and test external forecast procedures from experts outside seismology. We found that earthquakes as small as magnitude 2.5 provide important information on subsequent earthquakes larger than magnitude 5. A retrospective experiment for the 2010-2012 Canterbury earthquake sequence showed that some physics-based and hybrid models outperform catalog-based (e.g., ETAS) models. This experiment also demonstrates the ability of the CSEP infrastructure to support retrospective forecast testing. Current CSEP development activities include adoption of the Comprehensive Earthquake Catalog (ComCat) as an authorized data source, retrospective testing of simulation-based forecasts, and support for additive ensemble methods. We describe the open-source CSEP software that is available to researchers as they develop their forecast models. We also discuss how CSEP procedures are being adapted to intensity and ground motion prediction experiments as well as hazard model testing.

Sustaining an Online, Shared Community Resource for Models, Robust Open source Software Tools and Data for Volcanology - the Vhub Experience

NASA Astrophysics Data System (ADS)

Patra, A. K.; Valentine, G. A.; Bursik, M. I.; Connor, C.; Connor, L.; Jones, M.; Simakov, N.; Aghakhani, H.; Jones-Ivey, R.; Kosar, T.; Zhang, B.

2015-12-01

Over the last 5 years we have created a community collaboratory Vhub.org [Palma et al, J. App. Volc. 3:2 doi:10.1186/2191-5040-3-2] as a place to find volcanology-related resources, and a venue for users to disseminate tools, teaching resources, data, and an online platform to support collaborative efforts. As the community (current active users > 6000 from an estimated community of comparable size) embeds the tools in the collaboratory into educational and research workflows it became imperative to: a) redesign tools into robust, open source reusable software for online and offline usage/enhancement; b) share large datasets with remote collaborators and other users seamlessly with security; c) support complex workflows for uncertainty analysis, validation and verification and data assimilation with large data. The focus on tool development/redevelopment has been twofold - firstly to use best practices in software engineering and new hardware like multi-core and graphic processing units. Secondly we wish to enhance capabilities to support inverse modeling, uncertainty quantification using large ensembles and design of experiments, calibration, validation. Among software engineering practices we practice are open source facilitating community contributions, modularity and reusability. Our initial targets are four popular tools on Vhub - TITAN2D, TEPHRA2, PUFF and LAVA. Use of tools like these requires many observation driven data sets e.g. digital elevation models of topography, satellite imagery, field observations on deposits etc. These data are often maintained in private repositories that are privately shared by "sneaker-net". As a partial solution to this we tested mechanisms using irods software for online sharing of private data with public metadata and access limits. Finally, we adapted use of workflow engines (e.g. Pegasus) to support the complex data and computing workflows needed for usage like uncertainty quantification for hazard analysis using physical models.

Prospectively Evaluating the Collaboratory for the Study of Earthquake Predictability: An Evaluation of the UCERF2 and Updated Five-Year RELM Forecasts

NASA Astrophysics Data System (ADS)

Strader, Anne; Schneider, Max; Schorlemmer, Danijel; Liukis, Maria

2016-04-01

The Collaboratory for the Study of Earthquake Predictability (CSEP) was developed to rigorously test earthquake forecasts retrospectively and prospectively through reproducible, completely transparent experiments within a controlled environment (Zechar et al., 2010). During 2006-2011, thirteen five-year time-invariant prospective earthquake mainshock forecasts developed by the Regional Earthquake Likelihood Models (RELM) working group were evaluated through the CSEP testing center (Schorlemmer and Gerstenberger, 2007). The number, spatial, and magnitude components of the forecasts were compared to the respective observed seismicity components using a set of consistency tests (Schorlemmer et al., 2007, Zechar et al., 2010). In the initial experiment, all but three forecast models passed every test at the 95% significance level, with all forecasts displaying consistent log-likelihoods (L-test) and magnitude distributions (M-test) with the observed seismicity. In the ten-year RELM experiment update, we reevaluate these earthquake forecasts over an eight-year period from 2008-2016, to determine the consistency of previous likelihood testing results over longer time intervals. Additionally, we test the Uniform California Earthquake Rupture Forecast (UCERF2), developed by the U.S. Geological Survey (USGS), and the earthquake rate model developed by the California Geological Survey (CGS) and the USGS for the National Seismic Hazard Mapping Program (NSHMP) against the RELM forecasts. Both the UCERF2 and NSHMP forecasts pass all consistency tests, though the Helmstetter et al. (2007) and Shen et al. (2007) models exhibit greater information gain per earthquake according to the T- and W- tests (Rhoades et al., 2011). Though all but three RELM forecasts pass the spatial likelihood test (S-test), multiple forecasts fail the M-test due to overprediction of the number of earthquakes during the target period. Though there is no significant difference between the UCERF2 and NSHMP models, residual scores show that the NSHMP model is preferred in locations with earthquake occurrence, due to the lower seismicity rates forecasted by the UCERF2 model.

OpenRBC: Redefining the Frontier of Red Blood Cell Simulations at Protein Resolution

NASA Astrophysics Data System (ADS)

Tang, Yu-Hang; Lu, Lu; Li, He; Grinberg, Leopold; Sachdeva, Vipin; Evangelinos, Constantinos; Karniadakis, George

We present a from-scratch development of OpenRBC, a coarse-grained molecular dynamics code, which is capable of performing an unprecedented in silico experiment - simulating an entire mammal red blood cell lipid bilayer and cytoskeleton modeled by 4 million mesoscopic particles - on a single shared memory node. To achieve this, we invented an adaptive spatial searching algorithm to accelerate the computation of short-range pairwise interactions in an extremely sparse 3D space. The algorithm is based on a Voronoi partitioning of the point cloud of coarse-grained particles, and is continuously updated over the course of the simulation. The algorithm enables the construction of a lattice-free cell list, i.e. the key spatial searching data structure in our code, in O (N) time and space space with cells whose position and shape adapts automatically to the local density and curvature. The code implements NUMA/NUCA-aware OpenMP parallelization and achieves perfect scaling with up to hundreds of hardware threads. The code outperforms a legacy solver by more than 8 times in time-to-solution and more than 20 times in problem size, thus providing a new venue for probing the cytomechanics of red blood cells. This work was supported by the Department of Energy (DOE) Collaboratory on Mathematics for Mesoscopic Model- ing of Materials (CM4). YHT acknowledges partial financial support from an IBM Ph.D. Scholarship Award.

[?]Nonlinear Issues in the Aerothermochemistry of Gases and Materials and the Associated Physics and Dynamics of Interfaces

NASA Technical Reports Server (NTRS)

Johnson, Joseph A., III

1996-01-01

Our research and technology are focused on nonlinear issues in the aerothermochemistry of gases and materials and the associated physics and dynamics of interfaces. Our program is now organized to aggressively support the NASA Aeronautics Enterprise so as to: (a) develop a new generation of environmentally compatible, economic subsonic aircraft; (b) develop the technology base for an economically viable and environmentally compatible high-speed civil transport; (c) develop the technology options for new capabilities in high-performance aircraft; (d) develop hypersonic technologies for air-breathing flight; and (e) develop advanced concepts, understanding of physical phenomena, and theoretical, experimental, and computational tools for advanced aerospace systems. The implications from our research for aeronautical and aerospace technology have been both broad and deep. For example, using advanced computational techniques, we have determined exact solutions for the Schrodinger equation in electron-molecule scattering allowing us to evaluate atmospheric models important to reentry physics. We have also found a new class of exact solutions for the Navier Stokes equations. In experimental fluid dynamics, we have found explicit evidence of turbulence modification of droplet sizes in shock tube flow with condensation. We have developed a new diagnostic tool for the direct estimation of flow velocities at MHz sampling rates in quasi-one dimensional turbulent flow. This procedure suggests an unexpected confirmation of the possibility of 'natural' closure in Reynolds stresses with deep implications for the development of turbulent models. A transient increase is observed in both the spectral energy decay rate and the degree of chaotic complexity at the interface of a shock wave and a turbulent ionized gas. Even though the gas is apparently brought to rest by the shock wave, no evidence is found either of the expected relaminarization. A unique diamond-shaped nozzle has been designed for a detailed investigation of the effect of significant streamwise vorticity on the acoustic and IR characteristics of supersonic jets. Our results provide convincing evidence of the significant effect of vorticity on the far-field noise for the diamond jet as compared to the conventional round jets. We have found that the countercurrent shear layer mixes much more efficiently than conventional coflowing shear layers. We also developed the fluid thrust vectoring procedures which use counter flow to vector a jet. Our materials research has shown that the steep stress gradients at the fiber-matrix interface could be the primary cause of interface cracks after the processing of metallic and intermetallic matrix composites. New techniques have been evolved for: the microcharacterization of materials including microplastic strain and, point by point, the misorientation and plasticity for matrix composites; thermally induced stress measurements and load relaxation; the growth and characterization of metallic matrix composite interfaces; and for the growth of ferrite materials by pulsed laser deposition. The FAMU commitment to the HBCU Research Center also continues to be broad and deep.

Improving usability and accessibility of cheminformatics tools for chemists through cyberinfrastructure and education.

PubMed

Guha, Rajarshi; Wiggins, Gary D; Wild, David J; Baik, Mu-Hyun; Pierce And, Marlon E; Fox, Geoffrey C

Some of the latest trends in cheminformatics, computation, and the world wide web are reviewed with predictions of how these are likely to impact the field of cheminformatics in the next five years. The vision and some of the work of the Chemical Informatics and Cyberinfrastructure Collaboratory at Indiana University are described, which we base around the core concepts of e-Science and cyberinfrastructure that have proven successful in other fields. Our chemical informatics cyberinfrastructure is realized by building a flexible, generic infrastructure for cheminformatics tools and databases, exporting "best of breed" methods as easily-accessible web APIs for cheminformaticians, scientists, and researchers in other disciplines, and hosting a unique chemical informatics education program aimed at scientists and cheminformatics practitioners in academia and industry.

RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank

DOE Office of Scientific and Technical Information (OSTI.GOV)

Quinn, Gregory B.; Bi, Chunxiao; Christie, Cole H.

The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) resource provides tools for query, analysis and visualization of the 3D structures in the PDB archive. As the mobile Web is starting to surpass desktop and laptop usage, scientists and educators are beginning to integrate mobile devices into their research and teaching. In response, we have developed the RCSB PDB Mobile app for the iOS and Android mobile platforms to enable fast and convenient access to RCSB PDB data and services. Lastly, using the app, users from the general public to expert researchers can quickly search and visualize biomolecules,more » and add personal annotations via the RCSB PDB's integrated MyPDB service.« less

The AstroVR Collaboratory, an On-line Multi-User Environment for Research in Astrophysics

NASA Astrophysics Data System (ADS)

van Buren, D.; Curtis, P.; Nichols, D. A.; Brundage, M.

We describe our experiment with an on-line collaborative environment where users share the execution of programs and communicate via audio, video, and typed text. Collaborative environments represent the next step in computer-mediated conferencing, combining powerful compute engines, data persistence, shared applications, and teleconferencing tools. As proof of concept, we have implemented a shared image analysis tool, allowing geographically distinct users to analyze FITS images together. We anticipate that \\htmllink{AstroVR}{http://astrovr.ipac.caltech.edu:8888} and similar systems will become an important part of collaborative work in the next decade, including with applications in remote observing, spacecraft operations, on-line meetings, as well as and day-to-day research activities. The technology is generic and promises to find uses in business, medicine, government, and education.

Establishment of a Bioenergy-Focused Microalgae Strain Collection Using Rapid, High-Throughput Methodologies: Cooperative Research and Development Final Report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pienkos, Philip T.

2013-11-01

This project is part of the overall effort by and among NREL, Colorado State University, University of Colorado, and Colorado School of Mines known as the Colorado Center for Biorefining and Biofuels. This is part of a larger statewide effort provided for in House Bill 06-1322, establishing a Colorado Collaboratory that envisions these four institutions working together as part of the state'senergy plan. This individual project with Colorado School of Mines is the first of many envisioned in this overall effort. The project focuses on development of high throughput procedures aimed at rapidly isolating and purifying novel microalgal strains (specificallymore » green alga and diatoms) from water samples obtained from unique aquatic environments.« less

RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank

DOE PAGES

Quinn, Gregory B.; Bi, Chunxiao; Christie, Cole H.; ...

2014-09-02

The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) resource provides tools for query, analysis and visualization of the 3D structures in the PDB archive. As the mobile Web is starting to surpass desktop and laptop usage, scientists and educators are beginning to integrate mobile devices into their research and teaching. In response, we have developed the RCSB PDB Mobile app for the iOS and Android mobile platforms to enable fast and convenient access to RCSB PDB data and services. Lastly, using the app, users from the general public to expert researchers can quickly search and visualize biomolecules,more » and add personal annotations via the RCSB PDB's integrated MyPDB service.« less

Evolving the NCSA CyberCollaboratory for Distributed Environmental Observatory Networks

NASA Astrophysics Data System (ADS)

Myers, J.; Liu, Y.; Minsker, B.; Futrelle, J.; Downey, S.; Kim, I.; Rantanen, E.

2007-12-01

Since 2004, NCSA's Cybercollaboratory, which is built on top of the open source Liferay portal framework, has been evolving as part of NCSA's efforts to build national cyberinfrastructure to support collaborative research in environmental engineering and hydrological sciences and allow users to efficiently share contents (sensors, data, model, documents, etc.) in a context-sensitive way (e.g., providing different tools/data based on group affiliation and geospatial contexts). During this period, we provided the CyberCollaboratory to users in CLEANER (Collaborative Large-scale Engineering Analysis Network for Environmental Research, now WATer and Environmental Research Systems (WATERS) network) Project Office and several CLEANER /WATERS testbed projects. Preliminary statistics shows that one in four users (among over 400 registered users) provided contents with many other reading/accessing those contents (such as messages, documents, wikis). During the course of this use, and in evaluation by others including representatives from the CUAHSI (Consortium of Universities for the Advancement of Hydrologic Science) community, we have received significant feedback on issues of usability and suitability to various communities involved in environmental observatories. Much of this feedback applies to collaborative portals in general and some reflect a comparison of portals with newer Web 2.0 style social -networking sites. For example, users working in multiple groups found it difficult to get an overview of all of their activities and found differences in group layouts to be confusing. Users also found the standard account creation and group management processes cumbersome compared to inviting people to be friends on social sites and wanted a better sense of presence and social networks within the portal. The fragmentation of group documents between local stores, the portal document repository and email, and issues of "lost updates" was another significant concern. This poster reviews the usability feedback, identifies key issues that hinder traditional portal-based collaboration environments, and presents design changes made to the Cybercollaboratory to address them. Feedback on the effectiveness of the new design from hydrologists and environmental researchers and preliminary results from a formal usability study will also be presented.

NASA Exhibits

NASA Technical Reports Server (NTRS)

Deardorff, Glenn; Djomehri, M. Jahed; Freeman, Ken; Gambrel, Dave; Green, Bryan; Henze, Chris; Hinke, Thomas; Hood, Robert; Kiris, Cetin; Moran, Patrick;

Collaborative medical informatics research using the Internet and the World Wide Web.

PubMed Central

Shortliffe, E. H.; Barnett, G. O.; Cimino, J. J.; Greenes, R. A.; Huff, S. M.; Patel, V. L.

1996-01-01

The InterMed Collaboratory is an interdisciplinary project involving six participating medical institutions. There are two broad mandates for the effort. The first is to further the development, sharing, and demonstration of numerous software and system components, data sets, procedures and tools that will facilitate the collaborations and support the application goals of these projects. The second is to provide a distributed suite of clinical applications, guidelines, and knowledge-bases for clinical, educational, and administrative purposes. To define the interactions among the components, datasets, procedures, and tools that we are producing and sharing, we have identified a model composed of seven tiers, each of which supports the levels above it. In this paper we briefly describe those tiers and the nature of the collaborative process with which we have experimented. PMID:8947641

The Green Bank Northern Celestial Cap Pulsar Survey. II. The Discovery and Timing of 10 Pulsars

NASA Astrophysics Data System (ADS)

Kawash, A. M.; McLaughlin, M. A.; Kaplan, D. L.; DeCesar, M. E.; Levin, L.; Lorimer, D. R.; Lynch, R. S.; Stovall, K.; Swiggum, J. K.; Fonseca, E.; Archibald, A. M.; Banaszak, S.; Biwer, C. M.; Boyles, J.; Cui, B.; Dartez, L. P.; Day, D.; Ernst, S.; Ford, A. J.; Flanigan, J.; Heatherly, S. A.; Hessels, J. W. T.; Hinojosa, J.; Jenet, F. A.; Karako-Argaman, C.; Kaspi, V. M.; Kondratiev, V. I.; Leake, S.; Lunsford, G.; Martinez, J. G.; Mata, A.; Matheny, T. D.; Mcewen, A. E.; Mingyar, M. G.; Orsini, A. L.; Ransom, S. M.; Roberts, M. S. E.; Rohr, M. D.; Siemens, X.; Spiewak, R.; Stairs, I. H.; van Leeuwen, J.; Walker, A. N.; Wells, B. L.

2018-04-01

We present timing solutions for 10 pulsars discovered in 350 MHz searches with the Green Bank Telescope. Nine of these were discovered in the Green Bank Northern Celestial Cap survey and one was discovered by students in the Pulsar Search Collaboratory program during an analysis of drift-scan data. Following the discovery and confirmation with the Green Bank Telescope, timing has yielded phase-connected solutions with high-precision measurements of rotational and astrometric parameters. Eight of the pulsars are slow and isolated, including PSR J0930‑2301, a pulsar with a nulling fraction lower limit of ∼30% and a nulling timescale of seconds to minutes. This pulsar also shows evidence of mode changing. The remaining two pulsars have undergone recycling, accreting material from binary companions, resulting in higher spin frequencies. PSR J0557‑2948 is an isolated, 44 ms pulsar that has been partially recycled and is likely a former member of a binary system that was disrupted by a second supernova. The paucity of such so-called “disrupted binary pulsars” (DRPs) compared to double neutron star (DNS) binaries can be used to test current evolutionary scenarios, especially the kicks imparted on the neutron stars in the second supernova. There is some evidence that DRPs have larger space velocities, which could explain their small numbers. PSR J1806+2819 is a 15 ms pulsar in a 44-day orbit with a low-mass white dwarf companion. We did not detect the companion in archival optical data, indicating that it must be older than 1200 Myr.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zitney, S.E.

This presentation will examine process systems engineering R&D needs for application to advanced fossil energy (FE) systems and highlight ongoing research activities at the National Energy Technology Laboratory (NETL) under the auspices of a recently launched Collaboratory for Process & Dynamic Systems Research. The three current technology focus areas include: 1) High-fidelity systems with NETL's award-winning Advanced Process Engineering Co-Simulator (APECS) technology for integrating process simulation with computational fluid dynamics (CFD) and virtual engineering concepts, 2) Dynamic systems with R&D on plant-wide IGCC dynamic simulation, control, and real-time training applications, and 3) Systems optimization including large-scale process optimization, stochastic simulationmore » for risk/uncertainty analysis, and cost estimation. Continued R&D aimed at these and other key process systems engineering models, methods, and tools will accelerate the development of advanced gasification-based FE systems and produce increasingly valuable outcomes for DOE and the Nation.« less

e-Science and its implications.

PubMed

Hey, Tony; Trefethen, Anne

2003-08-15

After a definition of e-science and the Grid, the paper begins with an overview of the technological context of Grid developments. NASA's Information Power Grid is described as an early example of a 'prototype production Grid'. The discussion of e-science and the Grid is then set in the context of the UK e-Science Programme and is illustrated with reference to some UK e-science projects in science, engineering and medicine. The Open Standards approach to Grid middleware adopted by the community in the Global Grid Forum is described and compared with community-based standardization processes used for the Internet, MPI, Linux and the Web. Some implications of the imminent data deluge that will arise from the new generation of e-science experiments in terms of archiving and curation are then considered. The paper concludes with remarks about social and technological issues posed by Grid-enabled 'collaboratories' in both scientific and commercial contexts.

RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank.

PubMed

Quinn, Gregory B; Bi, Chunxiao; Christie, Cole H; Pang, Kyle; Prlić, Andreas; Nakane, Takanori; Zardecki, Christine; Voigt, Maria; Berman, Helen M; Bourne, Philip E; Rose, Peter W

2015-01-01

The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) resource provides tools for query, analysis and visualization of the 3D structures in the PDB archive. As the mobile Web is starting to surpass desktop and laptop usage, scientists and educators are beginning to integrate mobile devices into their research and teaching. In response, we have developed the RCSB PDB Mobile app for the iOS and Android mobile platforms to enable fast and convenient access to RCSB PDB data and services. Using the app, users from the general public to expert researchers can quickly search and visualize biomolecules, and add personal annotations via the RCSB PDB's integrated MyPDB service. RCSB PDB Mobile is freely available from the Apple App Store and Google Play (http://www.rcsb.org). © The Author 2014. Published by Oxford University Press.

RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank

PubMed Central

Quinn, Gregory B.; Bi, Chunxiao; Christie, Cole H.; Pang, Kyle; Prlić, Andreas; Nakane, Takanori; Zardecki, Christine; Voigt, Maria; Berman, Helen M.; Rose, Peter W.

2015-01-01

Summary: The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) resource provides tools for query, analysis and visualization of the 3D structures in the PDB archive. As the mobile Web is starting to surpass desktop and laptop usage, scientists and educators are beginning to integrate mobile devices into their research and teaching. In response, we have developed the RCSB PDB Mobile app for the iOS and Android mobile platforms to enable fast and convenient access to RCSB PDB data and services. Using the app, users from the general public to expert researchers can quickly search and visualize biomolecules, and add personal annotations via the RCSB PDB’s integrated MyPDB service. Availability and implementation: RCSB PDB Mobile is freely available from the Apple App Store and Google Play (http://www.rcsb.org). Contact: pwrose@ucsd.edu PMID:25183487

A forecast experiment of earthquake activity in Japan under Collaboratory for the Study of Earthquake Predictability (CSEP)

NASA Astrophysics Data System (ADS)

Hirata, N.; Yokoi, S.; Nanjo, K. Z.; Tsuruoka, H.

2012-04-01

One major focus of the current Japanese earthquake prediction research program (2009-2013), which is now integrated with the research program for prediction of volcanic eruptions, is to move toward creating testable earthquake forecast models. For this purpose we started an experiment of forecasting earthquake activity in Japan under the framework of the Collaboratory for the Study of Earthquake Predictability (CSEP) through an international collaboration. We established the CSEP Testing Centre, an infrastructure to encourage researchers to develop testable models for Japan, and to conduct verifiable prospective tests of their model performance. We started the 1st earthquake forecast testing experiment in Japan within the CSEP framework. We use the earthquake catalogue maintained and provided by the Japan Meteorological Agency (JMA). The experiment consists of 12 categories, with 4 testing classes with different time spans (1 day, 3 months, 1 year, and 3 years) and 3 testing regions called "All Japan," "Mainland," and "Kanto." A total of 105 models were submitted, and are currently under the CSEP official suite of tests for evaluating the performance of forecasts. The experiments were completed for 92 rounds for 1-day, 6 rounds for 3-month, and 3 rounds for 1-year classes. For 1-day testing class all models passed all the CSEP's evaluation tests at more than 90% rounds. The results of the 3-month testing class also gave us new knowledge concerning statistical forecasting models. All models showed a good performance for magnitude forecasting. On the other hand, observation is hardly consistent in space distribution with most models when many earthquakes occurred at a spot. Now we prepare the 3-D forecasting experiment with a depth range of 0 to 100 km in Kanto region. The testing center is improving an evaluation system for 1-day class experiment to finish forecasting and testing results within one day. The special issue of 1st part titled Earthquake Forecast Testing Experiment in Japan was published on the Earth, Planets and Space Vol. 63, No.3, 2011 on March, 2011. The 2nd part of this issue, which is now on line, will be published soon. An outline of the experiment and activities of the Japanese Testing Center are published on our WEB site; http://wwweic.eri.u-tokyo.ac.jp/ZISINyosoku/wiki.en/wiki.cgi

High-School Teams Joining Massive Pulsar Search

NASA Astrophysics Data System (ADS)

2008-09-01

High school students and teachers will join astronomers on the cutting edge of science under a program to be operated by the National Radio Astronomy Observatory (NRAO) and West Virginia University (WVU), and funded by the National Science Foundation (NSF). The program, called the Pulsar Search Collaboratory, will engage West Virginia students and teachers in a massive search for new pulsars using data from the Robert C. Byrd Green Bank Telescope (GBT). Sue Ann Heatherly Sue Ann Heatherly, NRAO Education Officer CREDIT: Bill Saxton, NRAO/AUI/NSF (Click on image for larger version) The NSF announced a $892,838 grant to NRAO and WVU to conduct the three-year program. The project will involve 60 teachers and some 600 students in helping astronomers analyze data from 1500 hours of observing time on the GBT. The 120 terabytes of data produced by some 70,000 individual pointings of the giant, 17-million-pound telescope is expected to reveal dozens of previously-unknown pulsars. "The students in this program will be partners in frontier research, discovering new pulsars and measuring changes in pulsars already known," said Sue Ann Heatherly, the NRAO Education Officer in Green Bank and Principal Investigator in the project. Pulsars are superdense neutron stars, the corpses of massive stars that have exploded as supernovae. As the neutron star spins, lighthouse-like beams of radio waves, streaming from the poles of its powerful magnetic field, sweep through space. When one of these beams sweeps across the Earth, radio telescopes can capture the pulse of radio waves. Pulsars serve as exotic laboratories for studying the physics of extreme conditions. Scientists can learn valuable new information about the physics of subatomic particles, electromagnetics, and General Relativity by observing pulsars and the changes they undergo over time. The Pulsar Search Collaboratory (PSC) combines the capabilities of NRAO and WVU to provide a unique opportunity for teachers and students to join in cutting-edge scientific research. The GBT has discovered more than 60 pulsars over the past five years, including the fastest-rotating pulsar ever found, a speedster spinning 716 times per second. At WVU, astronomers Maura McLaughlin and Duncan Lorimer are experienced pulsar specialists who use the GBT regularly for their research. Pulsar Graphic Pulsars Are Spinning Neutron Stars CREDIT: Bill Saxton, NRAO/AUI/NSF (Click on image for larger version) The PSC program will include training for teachers and student leaders at Green Bank, and an annual scientific seminar at WVU where all participants can present their research. During the year, participants will share information through an online collaboration site called the "collaboratory," operated by Northwestern University. Student teams will receive parcels of data from the GBT and analyze the data to discover pulsars. To do so, they will need to learn to use analysis software and to recognize man-made radio interference that contaminates the data. Each portion of the data will be analyzed by multiple teams. Of the 1500 hours of GBT observing data in the project, taken during the summer of 2007, some 300 hours is reserved for analysis by the student teams. This reserved data set is expected to include tens of new pulsars and about 100 known pulsars. "Because multiple teams will analyze each portion of the data, every student in the project is virtually guaranteed to discover a new pulsar," Heatherly said. "This will give West Virginia high school students the chance to make groundbreaking discoveries like finding exotic pulsar binary systems, pulsars with planetary systems, or pulsars spinning faster than currently thought possible," McLaughlin said. The project will begin recruiting teachers in February of 2008. The National Radio Astronomy Observatory is a facility of the National Science Foundation, operated under cooperative agreement by Associated Universities, Inc.

Influence of magnesia-to-phosphate molar ratio on microstructures, mechanical properties and thermal conductivity of magnesium potassium phosphate cement paste with large water-to-solid ratio

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xu, Biwan, E-mail: xubiwan@gmail.com; Ma, Hongyan, E-mail: mhy1103@gmail.com; Li, Zongjin

2015-02-15

This paper describes the influence of the magnesia-to-phosphate (M/P) molar ratios ranging from 4 to 12, on the properties and microstructures of magnesium potassium phosphate cement (MKPC) pastes with a large water-to-solid ratio (w/s) of 0.50. The setting behavior, compressive strength, tensile bonding strength and thermal conductivity of the MKPC pastes, were investigated. The results show that an increase in the M/P ratio can slow down the setting reaction, and clearly degrade the mechanical strengths, but clearly improve the thermal conductivity of MKPC pastes. Furthermore, micro-characterizations including X-ray diffraction, scanning electron microscopy and thermogravimetric analysis, on the MKPC pastes revealmore » that a lower M/P ratio can facilitate better crystallization of the resultant magnesium potassium phosphate hexahydrate (MKP) and a denser microstructure. Moreover, strong linear correlations are found between the mechanical strengths and the MKP-to-space ratio, and between thermal conductivity and the volume ratio of the unreacted magnesia to the MKP. - Highlights: • Increase of M/P molar ratio causes clear mechanical degradations on MKPC pastes. • Thermal conductivity of MKPC pastes is improved with increase of M/P molar ratio. • Lower M/P ratio leads to better MKP crystallization and denser microstructure. • Strengths of MKPC pastes are linearly correlated to the MKP-to-space ratios. • Thermal conductivity is affected by the volume ratio of unreacted magnesia to MKP.« less

Next-Day Earthquake Forecasts for California

NASA Astrophysics Data System (ADS)

Werner, M. J.; Jackson, D. D.; Kagan, Y. Y.

2008-12-01

We implemented a daily forecast of m > 4 earthquakes for California in the format suitable for testing in community-based earthquake predictability experiments: Regional Earthquake Likelihood Models (RELM) and the Collaboratory for the Study of Earthquake Predictability (CSEP). The forecast is based on near-real time earthquake reports from the ANSS catalog above magnitude 2 and will be available online. The model used to generate the forecasts is based on the Epidemic-Type Earthquake Sequence (ETES) model, a stochastic model of clustered and triggered seismicity. Our particular implementation is based on the earlier work of Helmstetter et al. (2006, 2007), but we extended the forecast to all of Cali-fornia, use more data to calibrate the model and its parameters, and made some modifications. Our forecasts will compete against the Short-Term Earthquake Probabilities (STEP) forecasts of Gersten-berger et al. (2005) and other models in the next-day testing class of the CSEP experiment in California. We illustrate our forecasts with examples and discuss preliminary results.

The RCSB Protein Data Bank: new resources for research and education

PubMed Central

Rose, Peter W.; Bi, Chunxiao; Bluhm, Wolfgang F.; Christie, Cole H.; Dimitropoulos, Dimitris; Dutta, Shuchismita; Green, Rachel K.; Goodsell, David S.; Prlić, Andreas; Quesada, Martha; Quinn, Gregory B.; Ramos, Alexander G.; Westbrook, John D.; Young, Jasmine; Zardecki, Christine; Berman, Helen M.; Bourne, Philip E.

2013-01-01

The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) develops tools and resources that provide a structural view of biology for research and education. The RCSB PDB web site (http://www.rcsb.org) uses the curated 3D macromolecular data contained in the PDB archive to offer unique methods to access, report and visualize data. Recent activities have focused on improving methods for simple and complex searches of PDB data, creating specialized access to chemical component data and providing domain-based structural alignments. New educational resources are offered at the PDB-101 educational view of the main web site such as Author Profiles that display a researcher’s PDB entries in a timeline. To promote different kinds of access to the RCSB PDB, Web Services have been expanded, and an RCSB PDB Mobile application for the iPhone/iPad has been released. These improvements enable new opportunities for analyzing and understanding structure data. PMID:23193259

The Diesel Combustion Collaboratory: Combustion Researchers Collaborating over the Internet

DOE Office of Scientific and Technical Information (OSTI.GOV)

C. M. Pancerella; L. A. Rahn; C. Yang

2000-02-01

The Diesel Combustion Collaborator (DCC) is a pilot project to develop and deploy collaborative technologies to combustion researchers distributed throughout the DOE national laboratories, academia, and industry. The result is a problem-solving environment for combustion research. Researchers collaborate over the Internet using DCC tools, which include: a distributed execution management system for running combustion models on widely distributed computers, including supercomputers; web-accessible data archiving capabilities for sharing graphical experimental or modeling data; electronic notebooks and shared workspaces for facilitating collaboration; visualization of combustion data; and video-conferencing and data-conferencing among researchers at remote sites. Security is a key aspect of themore » collaborative tools. In many cases, the authors have integrated these tools to allow data, including large combustion data sets, to flow seamlessly, for example, from modeling tools to data archives. In this paper the authors describe the work of a larger collaborative effort to design, implement and deploy the DCC.« less

Real imaging and size values of Saccharomyces cerevisiae cells with comparable contrast tuning to two environmental scanning electron microscopy modes.

PubMed

Misirli, Zulal; Oner, Ebru Toksoy; Kirdar, Betul

2007-01-01

The combined application of electron microscopy (EM) is frequently used for the microstructural investigation of biological specimens and plays two important roles in the quantification and in gaining an improved understanding of biological phenomena by making use of the highest resolution capability provided by EM. The possibility of imaging wet specimens in their "native" states in the environmental scanning electron microscope (ESEM) at high resolution and large depth of focus in real time is discussed in this paper. It is demonstrated here that new features can be discovered by the elimination of even the least hazardous approaches in some preparation techniques, that destroy the samples. Since the analysis conditions may influence the morphology and the extreme surface sensitivity of living biological systems, the results obtained from the same cultured cell with two different ESEM modes (Lvac mode and wet mode) were compared. This offers new opportunities compared with ESEM-wet/Lvac-mode imaging, since wet-mode imaging involves a real contrast and gives an indication of the changes in cell morphology and structure required for cell viability. In this study, wet-mode imaging was optimized using the unique ability of cell quantities for microcharacterization in situ giving very fine features of topological effects. Accordingly, the progress is reported by comparing the results of these two modes, which demonstrate interesting application details. In general, the functional comparisons have revealed that the fresh unprocessed Saccharomyces cerevisiae cells (ESEM-wet mode) were essentially unaltered with improved and minimal specimen preparation timescales, and the optimal cell viability degree was visualized and also measured quantitatively while the cell size remained unchanged with continuous images.

Development of a New System for Transport Simulation and Analysis at General Atomics

NASA Astrophysics Data System (ADS)

St. John, H. E.; Peng, Q.; Freeman, J.; Crotinger, J.

1997-11-01

General Atomics has begun a long term program to improve all aspects of experimental data analysis related to DIII--D. The object is to make local and visiting physicists as productive as possible, with only a small investment in training, by developing intuitive, sophisticated interfaces to existing and newly created computer programs. Here we describe our initial work and results of a pilot project in this program. The pilot project is a collaboratory effort between LLNL and GA which will ultimately result in the merger of Corsica and ONETWO (and selected modules from other codes) into a new advanced transport code system. The initial goal is to produce a graphical user interface to the transport code ONETWO which will couple to a programmable (steerable) front end designed for the transport system. This will be an object oriented scheme written primarily in python. The programmable application will integrate existing C, C^++, and Fortran methods in a single computational paradigm. Its most important feature is the use of plug in physics modules which will allow a high degree of customization.

The impact of socio-technical communication styles on the diversity and innovation potential of global science collaboratories

DOE PAGES

Ozmen, Ozgur; Yilmaz, Levent; Smith, Jeffrey

2016-02-09

Emerging cyber-infrastructure tools are enabling scientists to transparently co-develop, share, and communicate about real-time diverse forms of knowledge artifacts. In these environments, communication preferences of scientists are posited as an important factor affecting innovation capacity and robustness of social and knowledge network structures. Scientific knowledge creation in such communities is called global participatory science (GPS). Recently, using agent-based modeling and collective action theory as a basis, a complex adaptive social communication network model (CollectiveInnoSim) is implemented. This work leverages CollectiveInnoSim implementing communication preferences of scientists. Social network metrics and knowledge production patterns are used as proxy metrics to infer innovationmore » potential of emergent knowledge and collaboration networks. The objective is to present the underlying communication dynamics of GPS in a form of computational model and delineate the impacts of various communication preferences of scientists on innovation potential of the collaboration network. Ultimately, the insight gained can help policy-makers to design GPS environments and promote innovation.« less

The impact of socio-technical communication styles on the diversity and innovation potential of global science collaboratories

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ozmen, Ozgur; Yilmaz, Levent; Smith, Jeffrey

Emerging cyber-infrastructure tools are enabling scientists to transparently co-develop, share, and communicate about real-time diverse forms of knowledge artifacts. In these environments, communication preferences of scientists are posited as an important factor affecting innovation capacity and robustness of social and knowledge network structures. Scientific knowledge creation in such communities is called global participatory science (GPS). Recently, using agent-based modeling and collective action theory as a basis, a complex adaptive social communication network model (CollectiveInnoSim) is implemented. This work leverages CollectiveInnoSim implementing communication preferences of scientists. Social network metrics and knowledge production patterns are used as proxy metrics to infer innovationmore » potential of emergent knowledge and collaboration networks. The objective is to present the underlying communication dynamics of GPS in a form of computational model and delineate the impacts of various communication preferences of scientists on innovation potential of the collaboration network. Ultimately, the insight gained can help policy-makers to design GPS environments and promote innovation.« less

Do It Yourself (DIY) Earth Science Collaboratories Using Best Practices and Breakthrough Technologies

NASA Astrophysics Data System (ADS)

Stephan, E.

2017-12-01

The objective of published earth science study data results and literature on the Web should be to provide a means to integrate discoverable science resources through an open collaborative-Web. At the core of any open science collaborative infrastructure is the ability to discover, manage and ultimately use relevant data accessible to the collaboration. Equally important are the relationships between people, applications, services, and publications, which capture critical contextual knowledge that enable their effective use. While contributions of either irreproducible or costly data can be a great asset the inability of users being able to use the data intelligently or make sense of it, makes these investments not usable. An ability to describe ad-hoc discoverable usage methodologies, provide feedback to data producers, and identify and cite data in a systematic way by leveraging existing Web-enabled off the shelf technology is needed. Fortunately many break-through advancements in data publication best practices and government, open source, and commercial investments support consumers who can provide feedback, share experiences, and contribute back to the earth science ecosystem.

PSR J1930-1852: a Pulsar in the Widest Known Orbit around Another Neutron Star

NASA Astrophysics Data System (ADS)

Swiggum, J. K.; Rosen, R.; McLaughlin, M. A.; Lorimer, D. R.; Heatherly, S.; Lynch, R.; Scoles, S.; Hockett, T.; Filik, E.; Marlowe, J. A.; Barlow, B. N.; Weaver, M.; Hilzendeger, M.; Ernst, S.; Crowley, R.; Stone, E.; Miller, B.; Nunez, R.; Trevino, G.; Doehler, M.; Cramer, A.; Yencsik, D.; Thorley, J.; Andrews, R.; Laws, A.; Wenger, K.; Teter, L.; Snyder, T.; Dittmann, A.; Gray, S.; Carter, M.; McGough, C.; Dydiw, S.; Pruett, C.; Fink, J.; Vanderhout, A.

2015-06-01

In the summer of 2012, during a Pulsar Search Collaboratory workshop, two high-school students discovered J1930-1852, a pulsar in a double neutron star (DNS) system. Most DNS systems are characterized by short orbital periods, rapid spin periods, and eccentric orbits. However, J1930-1852 has the longest spin period ({{P}spin} ˜ 185 ms) and orbital period ({{P}b} ˜ 45 days) yet measured among known, recycled pulsars in DNS systems, implying a shorter than average and/or inefficient recycling period before its companion went supernova. We measure the relativistic advance of periastron for J1930-1852, \\dot{ω }=0.00078 (4) deg yr-1, which implies a total mass ({{M}tot}=2.59 (4) {{M}⊙ }) consistent with other DNS systems. The 2σ constraints on {{M}tot} place limits on the pulsar and companion masses ({{m}p}\\lt 1.32 {{M}⊙ } and {{m}c}\\gt 1.30 {{M}⊙ } respectively). J1930-1852’s spin and orbital parameters challenge current DNS population models and make J1930-1852 an important system for further investigation.

Retrospective Evaluation of the Long-Term CSEP-Italy Earthquake Forecasts

NASA Astrophysics Data System (ADS)

Werner, M. J.; Zechar, J. D.; Marzocchi, W.; Wiemer, S.

2010-12-01

On 1 August 2009, the global Collaboratory for the Study of Earthquake Predictability (CSEP) launched a prospective and comparative earthquake predictability experiment in Italy. The goal of the CSEP-Italy experiment is to test earthquake occurrence hypotheses that have been formalized as probabilistic earthquake forecasts over temporal scales that range from days to years. In the first round of forecast submissions, members of the CSEP-Italy Working Group presented eighteen five-year and ten-year earthquake forecasts to the European CSEP Testing Center at ETH Zurich. We considered the twelve time-independent earthquake forecasts among this set and evaluated them with respect to past seismicity data from two Italian earthquake catalogs. Here, we present the results of tests that measure the consistency of the forecasts with the past observations. Besides being an evaluation of the submitted time-independent forecasts, this exercise provided insight into a number of important issues in predictability experiments with regard to the specification of the forecasts, the performance of the tests, and the trade-off between the robustness of results and experiment duration.

The CompreHensive collaborativE Framework (CHEF)

NASA Astrophysics Data System (ADS)

Knoop, P. A.; Hardin, J.; Killeen, T.; Middleton, D.

2002-12-01

Data integration, publication, and archiving have become important considerations in most fields of science as experiments and models increase in complexity, and the collaborations necessary to conduct the research grow broader. The development of well thought out strategies and standards for such data handling, however, only goes part way in supporting the scientific process. A primary driving force for such efforts is the need of scientists to access and work with data in a timely, reasonable, and often collaborative fashion. Internet-based collaborative environments are one way to help complete this picture, linking scientists to the data they seek and to one another (e.g., Towards a Robust, Agile, and Comprehensive Information Infrastructure for the Geosciences: A Strategic Plan For High Performance Simulation, NCAR, 2000, http://www.ncar.ucar.edu/Director/plan.pdf). The CompreHensive collaborativE Framework (CHEF, http://chefproject.org) is a generic, extensible, web-based, open-source environment for collaboration. CHEF's goal is to provide the basic building blocks from which a community can assemble a collaborative environment that fits their needs. The design of CHEF has been influenced by our experience developing the Space Physics and Aeronomy Research Collaboratory (SPARC, http://www.si.umich.edu/SPARC), which provides integrated access to a wide variety of heterogeneous data sources, including community-standardized data bases. The design has also been heavily influenced by our involvement with an effort to extract and codify the broad underlying technical and social elements that lead to successful collaboratories (http://www.scienceofcollaboratories.org). A collaborative environment is in itself also not the complete answer to data handling, rather, it provides a facilitating environment in which community efforts to integrate, publish, archive, and share data using standard formats and practices can be taken advantage of by the end-users, the scientists. We present examples of how CHEF and its predecessors are utilized in a wide variety of scientific communities, including engineering, chemistry, and the geosciences. In particular, we focus on CHEF's utilization by the earthquake engineering community, whose Network for Earthquake Engineering Simulation (NEES, http://www.nees.org) involves a community effort to develop data standards and practices. In this context NEES is using CHEF as the "integration" environment in which to place the "tools" that bring together scientists and data; this includes data browsers, meta-data search engines, real-time and archival data viewers, etc. By developing these tools within the CHEF framework and exposing the community-developed data standards to the framework, they automatically gain the features, functionality, and capabilities offered by the collaborative environment. We also explore how a collaborative environment, in conjunction with community developed standards and practices for data integration, publishing, and archiving, could benefit the ocean science community.

Remote Research Mentoring of Virginia High School Students

NASA Astrophysics Data System (ADS)

Corby, Joanna; Dirienzo, W. J.; Beaton, R.; Pennucci, T.; Zasowski, G.

2013-01-01

Graduate students at the University of Virginia (UVa) are volunteering as research advisors on astronomy projects for Virginia's science and technology high schools. In previous years, we have worked with more than a dozen students through a research class at Central Virginia Governor's School in Lynchburg to develop an astronomy research curriculum that teaches background concepts and terminology, guides students in data analysis, and prepares them to present material in poster and oral forums. In our fourth year of operation, we are continuing to work with Central Virginia Governor's School and adapting the research curriculum to an independent course at Roanoke Valley Governor's School in Roanoke. Because both schools are far from UVa in Charlottesville, the program operates remotely; graduate advisors and high school students interact through "virtual" means, establishing a successful framework for meaningful remote mentoring. In the current year, six students will complete projects on astrophysical topics including megamasers, astrochemistry, and pulsars using data taken by the Green Bank Telescope (GBT). Students at Roanoke Valley were directly trained on the GBT as part of a separate outreach program called the Pulsar Search Collaboratory, and all six students will receive hands-on experience in handling GBT data. The current projects are components of larger research efforts by graduate student and professional level researchers, so that the projects contribute to high-level projects only possible with the GBT. This stands as a rare outreach program that uses the principle of “deliberative practice” to train high school students in the development of skills that are crucial to success in science. Furthermore, it provides graduate students with an opportunity to plan and advise research projects, developing a skill set that is required in more advanced academic positions. Our poster discusses the implementation of our online curriculum in two distinct class settings and highlights the students' research contributions.

The Electronic Encyclopedia of Earthquakes

NASA Astrophysics Data System (ADS)

Benthien, M.; Marquis, J.; Jordan, T.

2003-12-01

The Electronic Encyclopedia of Earthquakes is a collaborative project of the Southern California Earthquake Center (SCEC), the Consortia of Universities for Research in Earthquake Engineering (CUREE) and the Incorporated Research Institutions for Seismology (IRIS). This digital library organizes earthquake information online as a partner with the NSF-funded National Science, Technology, Engineering and Mathematics (STEM) Digital Library (NSDL) and the Digital Library for Earth System Education (DLESE). When complete, information and resources for over 500 Earth science and engineering topics will be included, with connections to curricular materials useful for teaching Earth Science, engineering, physics and mathematics. Although conceived primarily as an educational resource, the Encyclopedia is also a valuable portal to anyone seeking up-to-date earthquake information and authoritative technical sources. "E3" is a unique collaboration among earthquake scientists and engineers to articulate and document a common knowledge base with a shared terminology and conceptual framework. It is a platform for cross-training scientists and engineers in these complementary fields and will provide a basis for sustained communication and resource-building between major education and outreach activities. For example, the E3 collaborating organizations have leadership roles in the two largest earthquake engineering and earth science projects ever sponsored by NSF: the George E. Brown Network for Earthquake Engineering Simulation (CUREE) and the EarthScope Project (IRIS and SCEC). The E3 vocabulary and definitions are also being connected to a formal ontology under development by the SCEC/ITR project for knowledge management within the SCEC Collaboratory. The E3 development system is now fully operational, 165 entries are in the pipeline, and the development teams are capable of producing 20 new, fully reviewed encyclopedia entries each month. Over the next two years teams will complete 450 entries, which will populate the E3 collection to a level that fully spans earthquake science and engineering. Scientists, engineers, and educators who have suggestions for content to be included in the Encyclopedia can visit www.earthquake.info now to complete the "Suggest a Web Page" form.

Delivering biodefense continuing education to military medical providers by allowing a biodefense educational curriculum to unfold in practice.

PubMed

D'Alessandro, Donna M; D'Alessandro, Michael P

2007-12-01

A challenge today is how to deliver initial and continuing education on biodefense to military medical providers in a manner that can be integrated into their workflow and lifestyle. A summative evaluation of a prototypical biodefense digital library (BDL) and learning collaboratory was performed. The BDL posted daily links to biodefense news stories from January 2004 to December 2005. Four evaluations were completed, that is, content evaluation, curriculum comparison with a biodefense graduate program, usage evaluation, and impact factor analysis. News stories (N = 678) came from a broad range of authoritative national and international news sources (N = 178). News stories covered all of the categories in the required and elective formal biodefense graduate program courses. The BDL was consistently displayed on the first page of the top three Internet search engines, meaning that it was among the top 10 authoritative Internet sites on biodefense. Presenting biodefense news stories to busy military medical providers in an organized chronological fashion produces an unstructured biodefense educational curriculum that unfolds in practice and becomes an educational resource that is ultimately well regarded and may be efficient to use.

Microtubule-Actin Crosslinking Factor 1 and Plakins as Therapeutic Drug Targets.

PubMed

Quick, Quincy A

2018-01-26

Plakins are a family of seven cytoskeletal cross-linker proteins (microtubule-actin crosslinking factor 1 (MACF), bullous pemphigoid antigen (BPAG1) desmoplakin, envoplakin, periplakin, plectin, epiplakin) that network the three major filaments that comprise the cytoskeleton. Plakins have been found to be involved in disorders and diseases of the skin, heart, nervous system, and cancer that are attributed to autoimmune responses and genetic alterations of these macromolecules. Despite their role and involvement across a spectrum of several diseases, there are no current drugs or pharmacological agents that specifically target the members of this protein family. On the contrary, microtubules have traditionally been targeted by microtubule inhibiting agents, used for the treatment of diseases such as cancer, in spite of the deleterious toxicities associated with their clinical utility. The Research Collaboratory for Structural Bioinformatics (RCSB) was used here to identify therapeutic drugs targeting the plakin proteins, particularly the spectraplakins MACF1 and BPAG1, which contain microtubule-binding domains. RCSB analysis revealed that plakin proteins had 329 ligands, of which more than 50% were MACF1 and BPAG1 ligands and 10 were documented, clinically or experimentally, to have several therapeutic applications as anticancer, anti-inflammatory, and antibiotic agents.

Management of information in distributed biomedical collaboratories.

PubMed

Keator, David B

2009-01-01

Organizing and annotating biomedical data in structured ways has gained much interest and focus in the last 30 years. Driven by decreases in digital storage costs and advances in genetics sequencing, imaging, electronic data collection, and microarray technologies, data is being collected at an alarming rate. The specialization of fields in biology and medicine demonstrates the need for somewhat different structures for storage and retrieval of data. For biologists, the need for structured information and integration across a number of domains drives development. For clinical researchers and hospitals, the need for a structured medical record accessible to, ideally, any medical practitioner who might require it during the course of research or patient treatment, patient confidentiality, and security are the driving developmental factors. Scientific data management systems generally consist of a few core services: a backend database system, a front-end graphical user interface, and an export/import mechanism or data interchange format to both get data into and out of the database and share data with collaborators. The chapter introduces some existing databases, distributed file systems, and interchange languages used within the biomedical research and clinical communities for scientific data management and exchange.

The GuideLine Interchange Format

PubMed Central

Ohno-Machado, Lucila; Gennari, John H.; Murphy, Shawn N.; Jain, Nilesh L.; Tu, Samson W.; Oliver, Diane E.; Pattison-Gordon, Edward; Greenes, Robert A.; Shortliffe, Edward H.; Barnett, G. Octo

1998-01-01

Objective: To allow exchange of clinical practice guidelines among institutions and computer-based applications. Design: The GuideLine Interchange Format (GLIF) specification consists of the GLIF model and the GLIF syntax. The GLIF model is an object-oriented representation that consists of a set of classes for guideline entities, attributes for those classes, and data types for the attribute values. The GLIF syntax specifies the format of the test file that contains the encoding. Methods: Researchers from the InterMed Collaboratory at Columbia University, Harvard University (Brigham and Women's Hospital and Massachusetts General Hospital), and Stanford University analyzed four existing guideline systems to derive a set of requirements for guideline representation. The GLIF specification is a consensus representation developed through a brainstorming process. Four clinical guidelines were encoded in GLIF to assess its expressivity and to study the variability that occurs when two people from different sites encode the same guideline. Results: The encoders reported that GLIF was adequately expressive. A comparison of the encodings revealed substantial variability. Conclusion: GLIF was sufficient to model the guidelines for the four conditions that were examined. GLIF needs improvement in standard representation of medical concepts, criterion logic, temporal information, and uncertainty. PMID:9670133

Lecture archiving on a larger scale at the University of Michigan and CERN

NASA Astrophysics Data System (ADS)

Herr, Jeremy; Lougheed, Robert; Neal, Homer A.

2010-04-01

The ATLAS Collaboratory Project at the University of Michigan has been a leader in the area of collaborative tools since 1999. Its activities include the development of standards, software and hardware tools for lecture archiving, and making recommendations for videoconferencing and remote teaching facilities. Starting in 2006 our group became involved in classroom recordings, and in early 2008 we spawned CARMA, a University-wide recording service. This service uses a new portable recording system that we developed. Capture, archiving and dissemination of rich multimedia content from lectures, tutorials and classes are increasingly widespread activities among universities and research institutes. A growing array of related commercial and open source technologies is becoming available, with several new products introduced in the last couple years. As the result of a new close partnership between U-M and CERN IT, a market survey of these products was conducted and a summary of the results are presented here. It is informing an ambitious effort in 2009 to equip many CERN rooms with automated lecture archiving systems, on a much larger scale than before. This new technology is being integrated with CERN's existing webcast, CDS, and Indico applications.

Development and Use of a Virtual NMR Facility

NASA Astrophysics Data System (ADS)

Keating, Kelly A.; Myers, James D.; Pelton, Jeffrey G.; Bair, Raymond A.; Wemmer, David E.; Ellis, Paul D.

2000-03-01

We have developed a "virtual NMR facility" (VNMRF) to enhance access to the NMR spectrometers in Pacific Northwest National Laboratory's Environmental Molecular Sciences Laboratory (EMSL). We use the term virtual facility to describe a real NMR facility made accessible via the Internet. The VNMRF combines secure remote operation of the EMSL's NMR spectrometers over the Internet with real-time videoconferencing, remotely controlled laboratory cameras, real-time computer display sharing, a Web-based electronic laboratory notebook, and other capabilities. Remote VNMRF users can see and converse with EMSL researchers, directly and securely control the EMSL spectrometers, and collaboratively analyze results. A customized Electronic Laboratory Notebook allows interactive Web-based access to group notes, experimental parameters, proposed molecular structures, and other aspects of a research project. This paper describes our experience developing a VNMRF and details the specific capabilities available through the EMSL VNMRF. We show how the VNMRF has evolved during a test project and present an evaluation of its impact in the EMSL and its potential as a model for other scientific facilities. All Collaboratory software used in the VNMRF is freely available from http://www.emsl.pnl.gov:2080/docs/collab.

Microtubule-Actin Crosslinking Factor 1 and Plakins as Therapeutic Drug Targets

PubMed Central

Quick, Quincy A.

2018-01-01

Plakins are a family of seven cytoskeletal cross-linker proteins (microtubule-actin crosslinking factor 1 (MACF), bullous pemphigoid antigen (BPAG1) desmoplakin, envoplakin, periplakin, plectin, epiplakin) that network the three major filaments that comprise the cytoskeleton. Plakins have been found to be involved in disorders and diseases of the skin, heart, nervous system, and cancer that are attributed to autoimmune responses and genetic alterations of these macromolecules. Despite their role and involvement across a spectrum of several diseases, there are no current drugs or pharmacological agents that specifically target the members of this protein family. On the contrary, microtubules have traditionally been targeted by microtubule inhibiting agents, used for the treatment of diseases such as cancer, in spite of the deleterious toxicities associated with their clinical utility. The Research Collaboratory for Structural Bioinformatics (RCSB) was used here to identify therapeutic drugs targeting the plakin proteins, particularly the spectraplakins MACF1 and BPAG1, which contain microtubule-binding domains. RCSB analysis revealed that plakin proteins had 329 ligands, of which more than 50% were MACF1 and BPAG1 ligands and 10 were documented, clinically or experimentally, to have several therapeutic applications as anticancer, anti-inflammatory, and antibiotic agents. PMID:29373494

Rate/state Coulomb stress transfer model for the CSEP Japan seismicity forecast

NASA Astrophysics Data System (ADS)

Toda, Shinji; Enescu, Bogdan

2011-03-01

Numerous studies retrospectively found that seismicity rate jumps (drops) by coseismic Coulomb stress increase (decrease). The Collaboratory for the Study of Earthquake Prediction (CSEP) instead provides us an opportunity for prospective testing of the Coulomb hypothesis. Here we adapt our stress transfer model incorporating rate and state dependent friction law to the CSEP Japan seismicity forecast. We demonstrate how to compute the forecast rates of large shocks in 2009 using the large earthquakes during the past 120 years. The time dependent impact of the coseismic stress perturbations explains qualitatively well the occurrence of the recent moderate size shocks. Such ability is partly similar to that of statistical earthquake clustering models. However, our model differs from them as follows: the off-fault aftershock zones can be simulated using finite fault sources; the regional areal patterns of triggered seismicity are modified by the dominant mechanisms of the potential sources; the imparted stresses due to large earthquakes produce stress shadows that lead to a reduction of the forecasted number of earthquakes. Although the model relies on several unknown parameters, it is the first physics based model submitted to the CSEP Japan test center and has the potential to be tuned for short-term earthquake forecasts.

The First Occurrence in the Fossil Record of an Aquatic Avian Twig-Nest with Phoenicopteriformes Eggs: Evolutionary Implications

PubMed Central

Grellet-Tinner, Gerald; Murelaga, Xabier; Larrasoaña, Juan C.; Silveira, Luis F.; Olivares, Maitane; Ortega, Luis A.; Trimby, Patrick W.; Pascual, Ana

2012-01-01

Background We describe the first occurrence in the fossil record of an aquatic avian twig-nest with five eggs in situ (Early Miocene Tudela Formation, Ebro Basin, Spain). Extensive outcrops of this formation reveal autochthonous avian osteological and oological fossils that represent a single taxon identified as a basal phoenicopterid. Although the eggshell structure is definitively phoenicopterid, the characteristics of both the nest and the eggs are similar to those of modern grebes. These observations allow us to address the origin of the disparities between the sister taxa Podicipedidae and Phoenicopteridae crown clades, and traces the evolution of the nesting and reproductive environments for phoenicopteriforms. Methodology/Principal Findings Multi-disciplinary analyses performed on fossilized vegetation and eggshells from the eggs in the nest and its embedding sediments indicate that this new phoenicopterid thrived under a semi-arid climate in an oligohaline (seasonally mesohaline) shallow endorheic lacustine environment. High-end microcharacterizations including SEM, TEM, and EBSD techniques were pivotal to identifying these phoenicopterid eggshells. Anatomical comparisons of the fossil bones with those of Phoenicopteriformes and Podicipediformes crown clades and extinct palaelodids confirm that this avian fossil assemblage belongs to a new and basal phoenicopterid. Conclusions/Significance Although the Podicipediformes-Phoenicopteriformes sister group relationship is now well supported, flamingos and grebes exhibit feeding, reproductive, and nesting strategies that diverge significantly. Our multi-disciplinary study is the first to reveal that the phoenicopteriform reproductive behaviour, nesting ecology and nest characteristics derived from grebe-like type strategies to reach the extremely specialized conditions observed in modern flamingo crown groups. Furthermore, our study enables us to map ecological and reproductive characters on the Phoenicopteriformes evolutionary lineage. Our results demonstrate that the nesting paleoenvironments of flamingos were closely linked to the unique ecology of this locality, which is a direct result of special climatic (high evaporitic regime) and geological (fault system) conditions. PMID:23082136

Composition of bone and apatitic biomaterials as revealed by intravital Raman microspectroscopy.

PubMed

Penel, G; Delfosse, C; Descamps, M; Leroy, G

2005-05-01

Microcharacterization of biominerals allows a better understanding of the pathophysiological events that occur in calcified tissues and synthetic biomaterials. Different methods have been extensively used to conduct such investigations. A new model for the intravital study of the composition and structure of membranous bone by Raman microspectroscopy is described. Titanium bone chambers equipped with a fused-silica optical window were implanted transcutaneously in the calvaria of New Zealand rabbits. The implanted optical windows were well tolerated, and spectral acquisitions were performed without any additional invasive procedure. Bone and implanted apatitic biomaterials were analyzed at different times after surgery. All Raman bands were unambiguously identified in the bone and biomaterial spectra. The main PO4 and CO3 Raman bands in bone spectra were consistent with those found in the carbonated apatite spectrum. The major collagen bands were always observed around 1200-1300 (amide III) and 1600-1700 (amide I) delta cm(-1) and, 1400-1470 and 2800-3100 delta cm(-1) (bending and stretching modes of CH groups, respectively). The phenylalanine (Phe) band was identified in all spectra at 1003 delta cm(-1) and overlapped that of the weak HPO4(2-) ion. The CH bands frequently overlapped the lipid bands. However a distinct protein and lipid bands were detected at 2950 and 2852 delta cm(-1), respectively. In bone areas close to blood vessels, the Raman signature of hemoglobin was detected with a characteristic band at 754 delta cm(-1). The changes observed in bone varied as a function of time and location. The composition and structure of all of the biomaterials studied--including those that were resorbable--seemed to remain stable over time and location. We report for the first time the complete intravital study of Raman spectra of bone and calcium phosphate biomaterials over a period of 8 months. This new approach does not require specimen preparation and allows simultaneous observation of mineral and organic bone constituents over time, which therefore should provide insightful information about their relationship.

CSEP-Japan: The Japanese node of the collaboratory for the study of earthquake predictability

NASA Astrophysics Data System (ADS)

Yokoi, S.; Tsuruoka, H.; Nanjo, K.; Hirata, N.

2011-12-01

Collaboratory for the Study of Earthquake Predictability (CSEP) is a global project of earthquake predictability research. The final goal of this project is to have a look for the intrinsic predictability of the earthquake rupture process through forecast testing experiments. The Earthquake Research Institute, the University of Tokyo joined the CSEP and started the Japanese testing center called as CSEP-Japan. This testing center constitutes an open access to researchers contributing earthquake forecast models for applied to Japan. A total of 91 earthquake forecast models were submitted on the prospective experiment starting from 1 November 2009. The models are separated into 4 testing classes (1 day, 3 months, 1 year and 3 years) and 3 testing regions covering an area of Japan including sea area, Japanese mainland and Kanto district. We evaluate the performance of the models in the official suite of tests defined by the CSEP. The experiments of 1-day, 3-month, 1-year and 3-year forecasting classes were implemented for 92 rounds, 4 rounds, 1round and 0 round (now in progress), respectively. The results of the 3-month class gave us new knowledge concerning statistical forecasting models. All models showed a good performance for magnitude forecasting. On the other hand, observation is hardly consistent in space-distribution with most models in some cases where many earthquakes occurred at the same spot. Throughout the experiment, it has been clarified that some properties of the CSEP's evaluation tests such as the L-test show strong correlation with the N-test. We are now processing to own (cyber-) infrastructure to support the forecast experiment as follows. (1) Japanese seismicity has changed since the 2011 Tohoku earthquake. The 3rd call for forecasting models was announced in order to promote model improvement for forecasting earthquakes after this earthquake. So, we provide Japanese seismicity catalog maintained by JMA for modelers to study how seismicity changes in Japan. (2) Now we prepare the 3-D forecasting experiment with a depth range of 0 to 100 km in Kanto region. (3) The testing center improved an evaluation system for 1-day class experiment because this testing class required fast calculation ability to finish forecasting and testing results within one day. This development will make a real-time forecasting system come true. (4) The special issue of 1st part titled Earthquake Forecast Testing Experiment in Japan was published on the Earth, Planets and Space Vol. 63, No.3, 2011 on March, 2011. This issue includes papers of algorithm of statistical models participating our experiment and outline of the experiment in Japan. The 2nd part of this issue, which is now on line, will be published soon. In this presentation, we will overview CSEP-Japan and results of the experiments, and discuss direction of our activity. An outline of the experiment and activities of the Japanese Testing Center are published on our WEB site;

Infrastructure for collaborative science and societal applications in the Columbia River estuary

NASA Astrophysics Data System (ADS)

Baptista, António M.; Seaton, Charles; Wilkin, Michael P.; Riseman, Sarah F.; Needoba, Joseph A.; Maier, David; Turner, Paul J.; Kärnä, Tuomas; Lopez, Jesse E.; Herfort, Lydie; Megler, V. M.; McNeil, Craig; Crump, Byron C.; Peterson, Tawnya D.; Spitz, Yvette H.; Simon, Holly M.

2015-12-01

To meet societal needs, modern estuarine science needs to be interdisciplinary and collaborative, combine discovery with hypotheses testing, and be responsive to issues facing both regional and global stakeholders. Such an approach is best conducted with the benefit of data-rich environments, where information from sensors and models is openly accessible within convenient timeframes. Here, we introduce the operational infrastructure of one such data-rich environment, a collaboratory created to support (a) interdisciplinary research in the Columbia River estuary by the multi-institutional team of investigators of the Science and Technology Center for Coastal Margin Observation & Prediction and (b) the integration of scientific knowledge into regional decision making. Core components of the operational infrastructure are an observation network, a modeling system and a cyber-infrastructure, each of which is described. The observation network is anchored on an extensive array of long-term stations, many of them interdisciplinary, and is complemented by on-demand deployment of temporary stations and mobile platforms, often in coordinated field campaigns. The modeling system is based on finiteelement unstructured-grid codes and includes operational and process-oriented simulations of circulation, sediments and ecosystem processes. The flow of information is managed through a dedicated cyber-infrastructure, conversant with regional and national observing systems.

Distributed computing testbed for a remote experimental environment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Butner, D.N.; Casper, T.A.; Howard, B.C.

1995-09-18

Collaboration is increasing as physics research becomes concentrated on a few large, expensive facilities, particularly in magnetic fusion energy research, with national and international participation. These facilities are designed for steady state operation and interactive, real-time experimentation. We are developing tools to provide for the establishment of geographically distant centers for interactive operations; such centers would allow scientists to participate in experiments from their home institutions. A testbed is being developed for a Remote Experimental Environment (REE), a ``Collaboratory.`` The testbed will be used to evaluate the ability of a remotely located group of scientists to conduct research on themore » DIII-D Tokamak at General Atomics. The REE will serve as a testing environment for advanced control and collaboration concepts applicable to future experiments. Process-to-process communications over high speed wide area networks provide real-time synchronization and exchange of data among multiple computer networks, while the ability to conduct research is enhanced by adding audio/video communication capabilities. The Open Software Foundation`s Distributed Computing Environment is being used to test concepts in distributed control, security, naming, remote procedure calls and distributed file access using the Distributed File Services. We are exploring the technology and sociology of remotely participating in the operation of a large scale experimental facility.« less

Retrospective forecast of ETAS model with daily parameters estimate

NASA Astrophysics Data System (ADS)

Falcone, Giuseppe; Murru, Maura; Console, Rodolfo; Marzocchi, Warner; Zhuang, Jiancang

2016-04-01

We present a retrospective ETAS (Epidemic Type of Aftershock Sequence) model based on the daily updating of free parameters during the background, the learning and the test phase of a seismic sequence. The idea was born after the 2011 Tohoku-Oki earthquake. The CSEP (Collaboratory for the Study of Earthquake Predictability) Center in Japan provided an appropriate testing benchmark for the five 1-day submitted models. Of all the models, only one was able to successfully predict the number of events that really happened. This result was verified using both the real time and the revised catalogs. The main cause of the failure was in the underestimation of the forecasted events, due to model parameters maintained fixed during the test. Moreover, the absence in the learning catalog of an event similar to the magnitude of the mainshock (M9.0), which drastically changed the seismicity in the area, made the learning parameters not suitable to describe the real seismicity. As an example of this methodological development we show the evolution of the model parameters during the last two strong seismic sequences in Italy: the 2009 L'Aquila and the 2012 Reggio Emilia episodes. The achievement of the model with daily updated parameters is compared with that of same model where the parameters remain fixed during the test time.

Evaluation of annual, global seismicity forecasts, including ensemble models

NASA Astrophysics Data System (ADS)

Taroni, Matteo; Zechar, Jeremy; Marzocchi, Warner

2013-04-01

In 2009, the Collaboratory for the Study of the Earthquake Predictability (CSEP) initiated a prototype global earthquake forecast experiment. Three models participated in this experiment for 2009, 2010 and 2011—each model forecast the number of earthquakes above magnitude 6 in 1x1 degree cells that span the globe. Here we use likelihood-based metrics to evaluate the consistency of the forecasts with the observed seismicity. We compare model performance with statistical tests and a new method based on the peer-to-peer gambling score. The results of the comparisons are used to build ensemble models that are a weighted combination of the individual models. Notably, in these experiments the ensemble model always performs significantly better than the single best-performing model. Our results indicate the following: i) time-varying forecasts, if not updated after each major shock, may not provide significant advantages with respect to time-invariant models in 1-year forecast experiments; ii) the spatial distribution seems to be the most important feature to characterize the different forecasting performances of the models; iii) the interpretation of consistency tests may be misleading because some good models may be rejected while trivial models may pass consistency tests; iv) a proper ensemble modeling seems to be a valuable procedure to get the best performing model for practical purposes.

Ethical and regulatory issues of pragmatic cluster randomized trials in contemporary health systems

PubMed Central

Anderson, Monique L; Califf, Robert M; Sugarman, Jeremy

2015-01-01

Cluster randomized trials (CRTs) randomly assign groups of individuals to examine research questions or test interventions and measure their effects on individuals. Recent emphasis on quality improvement, comparative effectiveness, and learning health systems has prompted expanded use of pragmatic CRTs in routine healthcare settings, which in turn poses practical and ethical challenges that current oversight frameworks may not adequately address. The 2012 Ottawa Statement provides a basis for considering many issues related to pragmatic CRTs but challenges remain, including some arising from the current U.S. research and healthcare regulations. In order to examine the ethical, regulatory, and practical questions facing pragmatic CRTs in healthcare settings, the National Institutes of Health (NIH) Health Care Systems Research Collaboratory convened a workshop in Bethesda, Maryland in July of 2013. Attendees included experts in clinical trials, patient advocacy, research ethics, and research regulations from academia, industry, the NIH, and other federal agencies. Workshop participants identified substantial barriers to implementing these types of CRTs, including issues related to research design, gatekeepers and governance in health systems, consent, institutional review boards, data monitoring, privacy, and special populations. We describe these barriers and suggest means for understanding and overcoming them to facilitate pragmatic CRTs in healthcare settings. PMID:25733677

NQRY Coaching: Scientists and Science Educators Energizing the Next Generation

NASA Astrophysics Data System (ADS)

Shope, R. E.

2007-12-01

A recent National Academy of Science report recommends that science educators focus strategically on teaching the practice of science. To accomplish this, we have devised and implemented the Science Performance Collaboratory, a collaborative research, education, and workforce model that brings scientists and science educators together to conduct scientific inquiry. In this session, we demonstrate how to form active inquiry teams around Arctica Science Research content areas related to the International Polar Year. We use the term Arctica Science Research to refer to the entire scope of exploration and discovery relating to: polar science and its global connections; Arctic and Antarctic research and climate sciences; ice and cryospheric studies on Earth; polar regions of the Moon, Mars, and Mercury; icy worlds throughout the Solar System, such as Europa, Enceladus, Titan, Pluto and the Comets; cryovolvanism; ice in interstellar space, and beyond. We apply the notion of teaching the practice science by enacting three effective strategies: 1) The Inquiry Wheel Game, in which we develop an expanded understanding of what has been traditionally taught as "the scientific method"; 2) Acting Out the Science Story, in which we develop a physicalized expression of our conceptual understanding; and 3) Selecting Success Criteria for Inquiry Coaching, in which we reframe how we evaluate science learning as we teach the practice of science.

A prospective earthquake forecast experiment in the western Pacific

NASA Astrophysics Data System (ADS)

Eberhard, David A. J.; Zechar, J. Douglas; Wiemer, Stefan

2012-09-01

Since the beginning of 2009, the Collaboratory for the Study of Earthquake Predictability (CSEP) has been conducting an earthquake forecast experiment in the western Pacific. This experiment is an extension of the Kagan-Jackson experiments begun 15 years earlier and is a prototype for future global earthquake predictability experiments. At the beginning of each year, seismicity models make a spatially gridded forecast of the number of Mw≥ 5.8 earthquakes expected in the next year. For the three participating statistical models, we analyse the first two years of this experiment. We use likelihood-based metrics to evaluate the consistency of the forecasts with the observed target earthquakes and we apply measures based on Student's t-test and the Wilcoxon signed-rank test to compare the forecasts. Overall, a simple smoothed seismicity model (TripleS) performs the best, but there are some exceptions that indicate continued experiments are vital to fully understand the stability of these models, the robustness of model selection and, more generally, earthquake predictability in this region. We also estimate uncertainties in our results that are caused by uncertainties in earthquake location and seismic moment. Our uncertainty estimates are relatively small and suggest that the evaluation metrics are relatively robust. Finally, we consider the implications of our results for a global earthquake forecast experiment.

Earthquake Forecasting System in Italy

NASA Astrophysics Data System (ADS)

Falcone, G.; Marzocchi, W.; Murru, M.; Taroni, M.; Faenza, L.

2017-12-01

In Italy, after the 2009 L'Aquila earthquake, a procedure was developed for gathering and disseminating authoritative information about the time dependence of seismic hazard to help communities prepare for a potentially destructive earthquake. The most striking time dependency of the earthquake occurrence process is the time clustering, which is particularly pronounced in time windows of days and weeks. The Operational Earthquake Forecasting (OEF) system that is developed at the Seismic Hazard Center (Centro di Pericolosità Sismica, CPS) of the Istituto Nazionale di Geofisica e Vulcanologia (INGV) is the authoritative source of seismic hazard information for Italian Civil Protection. The philosophy of the system rests on a few basic concepts: transparency, reproducibility, and testability. In particular, the transparent, reproducible, and testable earthquake forecasting system developed at CPS is based on ensemble modeling and on a rigorous testing phase. Such phase is carried out according to the guidance proposed by the Collaboratory for the Study of Earthquake Predictability (CSEP, international infrastructure aimed at evaluating quantitatively earthquake prediction and forecast models through purely prospective and reproducible experiments). In the OEF system, the two most popular short-term models were used: the Epidemic-Type Aftershock Sequences (ETAS) and the Short-Term Earthquake Probabilities (STEP). Here, we report the results from OEF's 24hour earthquake forecasting during the main phases of the 2016-2017 sequence occurred in Central Apennines (Italy).

The Effects of Low Sulfate Concentrations on Modern Microbial Mat Communities: A Long Term Manipulation

NASA Technical Reports Server (NTRS)

Bebout, Brad; Carpenter, Steve; DesMarais, David J.; Discipulo, Mykell; Hogan, Mary; Turk, Kendra

2002-01-01

Microbial mats were widespread during the first ca. 2 Ga. of our biosphere's history. To better understand microbial ecosystems and their biomarkers under the low sulfate levels present in early oceans, we attempted a long-term (ca. 1 year) manipulation of sulfate in modem mats. Mats collected from salt ponds at Guerrero Negro, Baja Calif. Sur were incubated in a Greenhouse "Collaboratory" at Ames. Mats were maintained in artificial seawater brine containing either: 1) sulfate levels normal for these mats (70 mM), or 2) brine in which sulfate was replaced by chloride. Sulfate concentrations in the "low sulfate" brine gradually approached their lowest (to date) value of 0. 1 mM as sulfate was consumed and/or diffused out of the mat over a period of ca. 4 months. During that period of time, a number of differences between the treatments emerged. Relative to the "low sulfate" mats, "normal sulfate" mats had: 1) lower consumption of oxygen in the lower levels of the mat, 2) higher efficiencies of oxygenic photosynthesis, and 3) higher rates of nitrogen fixation. Rates of methane production by the mats increased greatly as sulfate concentrations fell below ca. 0.2 mM. In contrast, "low" and "normal" sulfate mats had similar net rates of exchange of O2 and dissolved inorganic C between the mats and overlying water. Reduced sulfate levels have diverse impacts upon these ecosystems.

Scalable Molecular Dynamics with NAMD

PubMed Central

Phillips, James C.; Braun, Rosemary; Wang, Wei; Gumbart, James; Tajkhorshid, Emad; Villa, Elizabeth; Chipot, Christophe; Skeel, Robert D.; Kalé, Laxmikant; Schulten, Klaus

2008-01-01

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD scales to hundreds of processors on high-end parallel platforms, as well as tens of processors on low-cost commodity clusters, and also runs on individual desktop and laptop computers. NAMD works with AMBER and CHARMM potential functions, parameters, and file formats. This paper, directed to novices as well as experts, first introduces concepts and methods used in the NAMD program, describing the classical molecular dynamics force field, equations of motion, and integration methods along with the efficient electrostatics evaluation algorithms employed and temperature and pressure controls used. Features for steering the simulation across barriers and for calculating both alchemical and conformational free energy differences are presented. The motivations for and a roadmap to the internal design of NAMD, implemented in C++ and based on Charm++ parallel objects, are outlined. The factors affecting the serial and parallel performance of a simulation are discussed. Next, typical NAMD use is illustrated with representative applications to a small, a medium, and a large biomolecular system, highlighting particular features of NAMD, e.g., the Tcl scripting language. Finally, the paper provides a list of the key features of NAMD and discusses the benefits of combining NAMD with the molecular graphics/sequence analysis software VMD and the grid computing/collaboratory software BioCoRE. NAMD is distributed free of charge with source code at www.ks.uiuc.edu. PMID:16222654

Build It: Will They Come?

NASA Astrophysics Data System (ADS)

Corrie, Brian; Zimmerman, Todd

Scientific research is fundamentally collaborative in nature, and many of today's complex scientific problems require domain expertise in a wide range of disciplines. In order to create research groups that can effectively explore such problems, research collaborations are often formed that involve colleagues at many institutions, sometimes spanning a country and often spanning the world. An increasingly common manifestation of such a collaboration is the collaboratory (Bos et al., 2007), a “…center without walls in which the nation's researchers can perform research without regard to geographical location — interacting with colleagues, accessing instrumentation, sharing data and computational resources, and accessing information from digital libraries.” In order to bring groups together on such a scale, a wide range of components need to be available to researchers, including distributed computer systems, remote instrumentation, data storage, collaboration tools, and the financial and human resources to operate and run such a system (National Research Council, 1993). Media Spaces, as both a technology and a social facilitator, have the potential to meet many of these needs. In this chapter, we focus on the use of scientific media spaces (SMS) as a tool for supporting collaboration in scientific research. In particular, we discuss the design, deployment, and use of a set of SMS environments deployed by WestGrid and one of its collaborating organizations, the Centre for Interdisciplinary Research in the Mathematical and Computational Sciences (IRMACS) over a 5-year period.

Beginning a partnership with PhotoVoice to explore environmental health and health inequities in minority communities.

PubMed

Kovacic, Melinda Butsch; Stigler, Sara; Smith, Angela; Kidd, Alexis; Vaughn, Lisa M

2014-10-27

Research informs action, but the challenge is its translation into practice. The 2012-2017 National Institute of Environmental Health Sciences Strategic Plan emphasizes partnership with community stakeholders to capture critical missing information about the effects of environment on health and to improve translation of study results, a daunting task for many traditionally-trained researchers. To better understand economic and neighborhood context consistent with these goals as well as existing inequities, we needed access to a highly affected community to inform and participate in our research. Our team therefore undertook a PhotoVoice project as a first step in establishing a participatory partnership and to appreciate the lived experiences of and build trust with youth visiting an urban community center in a high-risk, low-income, African American neighborhood located along a busy, polluted interstate. Ten 8-13 years-olds represented their community's perspectives through photographs over 14-weeks using structured questioning. Five themes emerged: poor eating habits/inadequate nutrition; safety/violence; family/friends/community support; future hopes/dreams; and garbage/environment. Public viewings of the photos/captions facilitated engagement of other community agencies and multidisciplinary academic faculties to work together to build a sustainable "community collaboratory" that will promote health at the center by providing families knowledge/skills to prevent/minimize environmental exposures via diet/lifestyle changes using community-engaged, citizen scientist and systems thinking approaches.

Security and Policy for Group Collaboration

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ian Foster; Carl Kesselman

2006-07-31

“Security and Policy for Group Collaboration” was a Collaboratory Middleware research project aimed at providing the fundamental security and policy infrastructure required to support the creation and operation of distributed, computationally enabled collaborations. The project developed infrastructure that exploits innovative new techniques to address challenging issues of scale, dynamics, distribution, and role. To reduce greatly the cost of adding new members to a collaboration, we developed and evaluated new techniques for creating and managing credentials based on public key certificates, including support for online certificate generation, online certificate repositories, and support for multiple certificate authorities. To facilitate the integration ofmore » new resources into a collaboration, we improved significantly the integration of local security environments. To make it easy to create and change the role and associated privileges of both resources and participants of collaboration, we developed community wide authorization services that provide distributed, scalable means for specifying policy. These services make it possible for the delegation of capability from the community to a specific user, class of user or resource. Finally, we instantiated our research results into a framework that makes it useable to a wide range of collaborative tools. The resulting mechanisms and software have been widely adopted within DOE projects and in many other scientific projects. The widespread adoption of our Globus Toolkit technology has provided, and continues to provide, a natural dissemination and technology transfer vehicle for our results.« less

Toward a framework for computer-mediated collaborative design in medical informatics.

PubMed

Patel, V L; Kaufman, D R; Allen, V G; Shortliffe, E H; Cimino, J J; Greenes, R A

1999-09-01

The development and implementation of enabling tools and methods that provide ready access to knowledge and information are among the central goals of medical informatics. The need for multi-institutional collaboration in the development of such tools and methods is increasingly being recognized. Collaboration involves communication, which typically involves individuals who work together at the same location. With the evolution of electronic modalities for communication, we seek to understand the role that such technologies can play in supporting collaboration, especially when the participants are geographically separated. Using the InterMed Collaboratory as a subject of study, we have analyzed their activities as an exercise in computer- and network-mediated collaborative design. We report on the cognitive, sociocultural, and logistical issues encountered when scientists from diverse organizations and backgrounds use communications technologies while designing and implementing shared products. Results demonstrate that it is important to match carefully the content with the mode of communication, identifying, for example, suitable uses of E-mail, conference calls, and face-to-face meetings. The special role of leaders in guiding and facilitating the group activities can also be seen, regardless of the communication setting in which the interactions occur. Most important is the proper use of technology to support the evolution of a shared vision of group goals and methods, an element that is clearly necessary before successful collaborative designs can proceed.

Pulsar population synthesis using palfa detections and pulsar search collaboratory discoveries including a wide DNS system and a nearby MSP

NASA Astrophysics Data System (ADS)

Swiggum, Joseph Karl

Using the ensemble of detections from pulsar surveys, we can learn about the sizes and characteristics of underlying populations. In this thesis, I analyze results from the Pulsar Arecibo L-band Feed Array (PALFA) precursor and Green Bank Telescope 350 MHz Drift Scan surveys; I examine survey sensitivity to see how detections can inform pulsar population models, I look at new ways of including young scientists -- high school students -- in the discovery process and I present timing solutions for students' discoveries (including a nearby millisecond pulsar and a pulsar in a wide-orbit double neutron star system). The PALFA survey is on-going and uses the ALFA 7-beam receiver at 1400 MHz to search both inner and outer Galactic sectors visible from Arecibo (32° ?£? 77° and 168° ?£? 214°) close to the Galactic plane (|b| ? 5°) for pulsars. The PALFA precursor survey observed a subset of this region, (|b| ? 1°) and detected 45 pulsars, including one known millisecond pulsar (MSP) and 11 previously unknown, long-period (normal) pulsars. I assess the sensitivity of the PALFA precursor survey and use the number of normal pulsar and MSP detections to infer the size of each underlying Galactic population. Based on 44 normal pulsar detections and one MSP, we constrain each population size to 107,000+36,000-25,000 and 15,000 +85,000-6,000 respectively with 95% confidence. Based on these constraints, we predict yields for the full PALFA survey and find a deficiency in normal pulsar detections, possibly due to radio frequency interference and/or scintillation, neither of which are currently accounted for in population simulations. The GBT 350 MHz Drift Scan survey collected data in the summer of 2007 while the GBT was stationary, undergoing track replacement. Results discussed here come from ~20% of the survey data, which were processed and donated to the Pulsar Search Collaboratory (PSC). The PSC is a joint outreach program between WVU and NRAO, involving high school students in the pulsar discovery process -- hands-on, cutting-edge research -- to foster their interest in pursuing Science, Technology, Engineering and Mathematics (STEM) related career paths. The PSC began in 2008; since then, over 100 teachers and 2,500 students from 18 states have participated and discovered seven pulsars. Of these seven, J1400--1431, a bright, nearby MSP shows promising characteristics for inclusion in pulsar timing arrays, which aim to detect gravitational waves by precisely timing an array of MSPs. Two others -- J1821+0155, a disrupted recycled pulsar and J1930--1852 show interesting properties due to interactions with binary companions. PSR J1930--1852 is a partially-recycled, first-to-evolve pulsar in a double neutron star (DNS) system with a high-eccentricity 45 day orbit. Its spin period and orbital period are factors of 2 and 3 higher, respectively, than any previously-known, primary DNS pulsars. We measure the relativistic advance of periastron o=0.00078(4), implying a total system mass of Mtot =2.59(4), which is consistent with other DNS systems. PSR J1930--1852's spin and orbital parameters, however, challenge current DNS evolution models, making it an important system for further investigation.

Simulation Based Earthquake Forecasting with RSQSim

NASA Astrophysics Data System (ADS)

Gilchrist, J. J.; Jordan, T. H.; Dieterich, J. H.; Richards-Dinger, K. B.

2016-12-01

We are developing a physics-based forecasting model for earthquake ruptures in California. We employ the 3D boundary element code RSQSim to generate synthetic catalogs with millions of events that span up to a million years. The simulations incorporate rate-state fault constitutive properties in complex, fully interacting fault systems. The Unified California Earthquake Rupture Forecast Version 3 (UCERF3) model and data sets are used for calibration of the catalogs and specification of fault geometry. Fault slip rates match the UCERF3 geologic slip rates and catalogs are tuned such that earthquake recurrence matches the UCERF3 model. Utilizing the Blue Waters Supercomputer, we produce a suite of million-year catalogs to investigate the epistemic uncertainty in the physical parameters used in the simulations. In particular, values of the rate- and state-friction parameters a and b, the initial shear and normal stress, as well as the earthquake slip speed, are varied over several simulations. In addition to testing multiple models with homogeneous values of the physical parameters, the parameters a, b, and the normal stress are varied with depth as well as in heterogeneous patterns across the faults. Cross validation of UCERF3 and RSQSim is performed within the SCEC Collaboratory for Interseismic Simulation and Modeling (CISM) to determine the affect of the uncertainties in physical parameters observed in the field and measured in the lab, on the uncertainties in probabilistic forecasting. We are particularly interested in the short-term hazards of multi-event sequences due to complex faulting and multi-fault ruptures.

The "Virtual Puget Sound:" a Cyberinfrastructure (and Social Process) for Analysis of the Multi-Scaled Biophysics and Human Dimensions in a Mesoscale Coupled Land/Atmosphere/Marine System

NASA Astrophysics Data System (ADS)

Logsdon, M.; Richey, J.; Campbell, B.; Stoermer, M.

2004-12-01

Earth system sciences is being challenged by the intellectual and the societal requirements of how to quantify the spatial patterns and temporal dynamics of changes in the atmosphere, landscape, and seascape, including human resources management. There are multiple issues in how to do this. The first is establishing the multi-disciplinary basis of how to systematically organize the required geophysical elements, from the very slow geological process forming the basic template to the very fast moving event-driven processes brought on by an individual rainstorm. The second is how to mobilize, access, see, and interact with the very disparate sources of information required. The third problem, perhaps the most difficult, is how to get the disparate disciplinary and management experts to constructively interact. These requirements drove the process for establishing the PRISM "Virtual Puget Sound." The basic construct is recognizing the inherent time and space attributes of the landscape, and then constructing an informatics environment that will allow the respective elements to be brought together in a collaboratory. Central to the enterprise is the use of an XML-enabled DataStream, to mobilize data from archives to models to visualizations. Outcomes are addressing such regional issues and daily stream flow, seasonal water supply and demand, low oxygen in Hood Canal, and sewage treatment plan siting. This model is being extended, as an Earth System Module, elsewhere in the world, from the Amazon to the Mekong.

QuakeML: Recent Development and First Applications of the Community-Created Seismological Data Exchange Standard

NASA Astrophysics Data System (ADS)

Euchner, F.; Schorlemmer, D.; Kästli, P.; Quakeml Group, T

2008-12-01

QuakeML is an XML-based exchange format for seismological data which is being developed using a community-driven approach. It covers basic event description, including picks, arrivals, amplitudes, magnitudes, origins, focal mechanisms, and moment tensors. Contributions have been made from ETH, GFZ, USC, SCEC, USGS, IRIS DMC, EMSC, ORFEUS, GNS, ZAMG, BRGM, and ISTI. The current release (Version 1.1, Proposed Recommendation) reflects the results of a public Request for Comments process which has been documented online at http://quakeml.org/RFC_BED_1.0. QuakeML has recently been adopted as a distribution format for earthquake catalogs by GNS Science, New Zealand, and the European-Mediterranean Seismological Centre (EMSC). These institutions provide prototype QuakeML web services. Furthermore, integration of the QuakeML data model in the CSEP (Collaboratory for the Study of Earthquake Predictability, http://www.cseptesting.org) testing center software developed by SCEC is under way. QuakePy is a Python- based seismicity analysis toolkit which is based on the QuakeML data model. Recently, QuakePy has been used to implement the PMC method for calculating network recording completeness (Schorlemmer and Woessner 2008, in press). Completeness results for seismic networks in Southern California and Japan can be retrieved through the CompletenessWeb (http://completenessweb.org). Future QuakeML development will include an extension for macroseismic information. Furthermore, development on seismic inventory information, resource identifiers, and resource metadata is under way. Online resources: http://www.quakeml.org, http://www.quakepy.org

Testing the Predictive Power of Coulomb Stress on Aftershock Sequences

NASA Astrophysics Data System (ADS)

Woessner, J.; Lombardi, A.; Werner, M. J.; Marzocchi, W.

2009-12-01

Empirical and statistical models of clustered seismicity are usually strongly stochastic and perceived to be uninformative in their forecasts, since only marginal distributions are used, such as the Omori-Utsu and Gutenberg-Richter laws. In contrast, so-called physics-based aftershock models, based on seismic rate changes calculated from Coulomb stress changes and rate-and-state friction, make more specific predictions: anisotropic stress shadows and multiplicative rate changes. We test the predictive power of models based on Coulomb stress changes against statistical models, including the popular Short Term Earthquake Probabilities and Epidemic-Type Aftershock Sequences models: We score and compare retrospective forecasts on the aftershock sequences of the 1992 Landers, USA, the 1997 Colfiorito, Italy, and the 2008 Selfoss, Iceland, earthquakes. To quantify predictability, we use likelihood-based metrics that test the consistency of the forecasts with the data, including modified and existing tests used in prospective forecast experiments within the Collaboratory for the Study of Earthquake Predictability (CSEP). Our results indicate that a statistical model performs best. Moreover, two Coulomb model classes seem unable to compete: Models based on deterministic Coulomb stress changes calculated from a given fault-slip model, and those based on fixed receiver faults. One model of Coulomb stress changes does perform well and sometimes outperforms the statistical models, but its predictive information is diluted, because of uncertainties included in the fault-slip model. Our results suggest that models based on Coulomb stress changes need to incorporate stochastic features that represent model and data uncertainty.

Earthquake forecasts for the CSEP Japan experiment based on the RI algorithm

NASA Astrophysics Data System (ADS)

Nanjo, K. Z.

2011-03-01

An earthquake forecast testing experiment for Japan, the first of its kind, is underway within the framework of the Collaboratory for the Study of Earthquake Predictability (CSEP) under a controlled environment. Here we give an overview of the earthquake forecast models, based on the RI algorithm, which we have submitted to the CSEP Japan experiment. Models have been submitted to a total of 9 categories, corresponding to 3 testing classes (3 years, 1 year, and 3 months) and 3 testing regions. The RI algorithm is originally a binary forecast system based on the working assumption that large earthquakes are more likely to occur in the future at locations of higher seismicity in the past. It is based on simple counts of the number of past earthquakes, which is called the Relative Intensity (RI) of seismicity. To improve its forecast performance, we first expand the RI algorithm by introducing spatial smoothing. We then convert the RI representation from a binary system to a CSEP-testable model that produces forecasts for the number of earthquakes of predefined magnitudes. We use information on past seismicity to tune the parameters. The final submittal consists of 36 executable computer codes: 4 variants corresponding to different smoothing parameters for each of the 9 categories. They will help to elucidate which categories and which smoothing parameters are the most meaningful for the RI hypothesis. The main purpose of our participation in the experiment is to better understand the significance of the relative intensity of seismicity for earthquake forecastability in Japan.

Energetically Unfavorable Amide Conformations for N6-Acetyllysine Side Chains in Refined Protein Structures

PubMed Central

Genshaft, Alexander; Moser, Joe-Ann S.; D'Antonio, Edward L.; Bowman, Christine M.; Christianson, David W.

2013-01-01

The reversible acetylation of lysine to form N6-acetyllysine in the regulation of protein function is a hallmark of epigenetics. Acetylation of the positively charged amino group of the lysine side chain generates a neutral N-alkylacetamide moiety that serves as a molecular “switch” for the modulation of protein function and protein-protein interactions. We now report the analysis of 381 N6-acetyllysine side chain amide conformations as found in 79 protein crystal structures and 11 protein NMR structures deposited in the Protein Data Bank (PDB) of the Research Collaboratory for Structural Bioinformatics. We find that only 74.3% of N6-acetyllysine residues in protein crystal structures and 46.5% in protein NMR structures contain amide groups with energetically preferred trans or generously trans conformations. Surprisingly, 17.6% of N6-acetyllysine residues in protein crystal structures and 5.3% in protein NMR structures contain amide groups with energetically unfavorable cis or generously cis conformations. Even more surprisingly, 8.1% of N6-acetyllysine residues in protein crystal structures and 48.2% in NMR structures contain amide groups with energetically prohibitive twisted conformations that approach the transition state structure for cis-trans isomerization. In contrast, 109 unique N-alkylacetamide groups contained in 84 highly-accurate small molecule crystal structures retrieved from the Cambridge Structural Database exclusively adopt energetically preferred trans conformations. Therefore, we conclude that cis and twisted N6-acetyllysine amides in protein structures deposited in the PDB are erroneously modeled due to their energetically unfavorable or prohibitive conformations. PMID:23401043

A Person-Centered, Registry-Based Learning Health System for Palliative Care: A Path to Coproducing Better Outcomes, Experience, Value, and Science

PubMed Central

Kamal, Arif H.; Kirkland, Kathryn B.; Meier, Diane E.; Nelson, Eugene C.; Pantilat, Steven Z.

2018-01-01

Abstract Background: Palliative care offers an approach to the care of people with serious illness that focuses on quality of life and aligning care with individual and family goals, and values in the context of what is medically achievable. Objective: Measurement of the impact of palliative care is critical for determining what works for which patients in what settings, to learn, improve care, and ensure access to high value care for people with serious illness. Methods: A learning health system that includes patients and families partnering with clinicians and care teams, is directly linked to a registry to support networks for improvement and research, and offers an ideal framework for measuring what matters to a range of stakeholders interested in improving care for this population. Measurements: Measurement focuses on the individual patient and family experience as the fundamental outcome of interest around which all care delivery is organized. Results: We describe an approach to codesigning and implementing a palliative care registry that functions as a learning health system, by combining patient and family inputs and clinical data to support person-centered care, quality improvement, accountability, transparency, and scientific research. Discussion: The potential for a palliative care learning health system that, by design, brings together enriched information environments to support coproduction of healthcare and facilitated peer networks to support patients and families, collaborative clinician networks to support palliative care program improvement, and collaboratories to support research and the application of research to benefit individual patients is immense. PMID:29091509

DockoMatic: automated peptide analog creation for high throughput virtual screening.

PubMed

Jacob, Reed B; Bullock, Casey W; Andersen, Tim; McDougal, Owen M

2011-10-01

The purpose of this manuscript is threefold: (1) to describe an update to DockoMatic that allows the user to generate cyclic peptide analog structure files based on protein database (pdb) files, (2) to test the accuracy of the peptide analog structure generation utility, and (3) to evaluate the high throughput capacity of DockoMatic. The DockoMatic graphical user interface interfaces with the software program Treepack to create user defined peptide analogs. To validate this approach, DockoMatic produced cyclic peptide analogs were tested for three-dimensional structure consistency and binding affinity against four experimentally determined peptide structure files available in the Research Collaboratory for Structural Bioinformatics database. The peptides used to evaluate this new functionality were alpha-conotoxins ImI, PnIA, and their published analogs. Peptide analogs were generated by DockoMatic and tested for their ability to bind to X-ray crystal structure models of the acetylcholine binding protein originating from Aplysia californica. The results, consisting of more than 300 simulations, demonstrate that DockoMatic predicts the binding energy of peptide structures to within 3.5 kcal mol(-1), and the orientation of bound ligand compares to within 1.8 Å root mean square deviation for ligand structures as compared to experimental data. Evaluation of high throughput virtual screening capacity demonstrated that Dockomatic can collect, evaluate, and summarize the output of 10,000 AutoDock jobs in less than 2 hours of computational time, while 100,000 jobs requires approximately 15 hours and 1,000,000 jobs is estimated to take up to a week. Copyright © 2011 Wiley Periodicals, Inc.

Conditional Probabilities of Large Earthquake Sequences in California from the Physics-based Rupture Simulator RSQSim

NASA Astrophysics Data System (ADS)

Gilchrist, J. J.; Jordan, T. H.; Shaw, B. E.; Milner, K. R.; Richards-Dinger, K. B.; Dieterich, J. H.

2017-12-01

Within the SCEC Collaboratory for Interseismic Simulation and Modeling (CISM), we are developing physics-based forecasting models for earthquake ruptures in California. We employ the 3D boundary element code RSQSim (Rate-State Earthquake Simulator of Dieterich & Richards-Dinger, 2010) to generate synthetic catalogs with tens of millions of events that span up to a million years each. This code models rupture nucleation by rate- and state-dependent friction and Coulomb stress transfer in complex, fully interacting fault systems. The Uniform California Earthquake Rupture Forecast Version 3 (UCERF3) fault and deformation models are used to specify the fault geometry and long-term slip rates. We have employed the Blue Waters supercomputer to generate long catalogs of simulated California seismicity from which we calculate the forecasting statistics for large events. We have performed probabilistic seismic hazard analysis with RSQSim catalogs that were calibrated with system-wide parameters and found a remarkably good agreement with UCERF3 (Milner et al., this meeting). We build on this analysis, comparing the conditional probabilities of sequences of large events from RSQSim and UCERF3. In making these comparisons, we consider the epistemic uncertainties associated with the RSQSim parameters (e.g., rate- and state-frictional parameters), as well as the effects of model-tuning (e.g., adjusting the RSQSim parameters to match UCERF3 recurrence rates). The comparisons illustrate how physics-based rupture simulators might assist forecasters in understanding the short-term hazards of large aftershocks and multi-event sequences associated with complex, multi-fault ruptures.

QuakeML: XML for Seismological Data Exchange and Resource Metadata Description

NASA Astrophysics Data System (ADS)

Euchner, F.; Schorlemmer, D.; Becker, J.; Heinloo, A.; Kästli, P.; Saul, J.; Weber, B.; QuakeML Working Group

2007-12-01

QuakeML is an XML-based data exchange format for seismology that is under development. Current collaborators are from ETH, GFZ, USC, USGS, IRIS DMC, EMSC, ORFEUS, and ISTI. QuakeML development was motivated by the lack of a widely accepted and well-documented data format that is applicable to a broad range of fields in seismology. The development team brings together expertise from communities dealing with analysis and creation of earthquake catalogs, distribution of seismic bulletins, and real-time processing of seismic data. Efforts to merge QuakeML with existing XML dialects are under way. The first release of QuakeML will cover a basic description of seismic events including picks, arrivals, amplitudes, magnitudes, origins, focal mechanisms, and moment tensors. Further extensions are in progress or planned, e.g., for macroseismic information, location probability density functions, slip distributions, and ground motion information. The QuakeML language definition is supplemented by a concept to provide resource metadata and facilitate metadata exchange between distributed data providers. For that purpose, we introduce unique, location-independent identifiers of seismological resources. As an application of QuakeML, ETH Zurich currently develops a Python-based seismicity analysis toolkit as a contribution to CSEP (Collaboratory for the Study of Earthquake Predictability). We follow a collaborative and transparent development approach along the lines of the procedures of the World Wide Web Consortium (W3C). QuakeML currently is in working draft status. The standard description will be subjected to a public Request for Comments (RFC) process and eventually reach the status of a recommendation. QuakeML can be found at http://www.quakeml.org.

Japanese earthquake predictability experiment with multiple runs before and after the 2011 Tohoku-oki earthquake

NASA Astrophysics Data System (ADS)

Hirata, N.; Tsuruoka, H.; Yokoi, S.

2011-12-01

The current Japanese national earthquake prediction program emphasizes the importance of modeling as well as monitoring for a sound scientific development of earthquake prediction research. One major focus of the current program is to move toward creating testable earthquake forecast models. For this purpose, in 2009 we joined the Collaboratory for the Study of Earthquake Predictability (CSEP) and installed, through an international collaboration, the CSEP Testing Centre, an infrastructure to encourage researchers to develop testable models for Japan. We started Japanese earthquake predictability experiment on November 1, 2009. The experiment consists of 12 categories, with 4 testing classes with different time spans (1 day, 3 months, 1 year and 3 years) and 3 testing regions called 'All Japan,' 'Mainland,' and 'Kanto.' A total of 160 models, as of August 2013, were submitted, and are currently under the CSEP official suite of tests for evaluating the performance of forecasts. We will present results of prospective forecast and testing for periods before and after the 2011 Tohoku-oki earthquake. Because a seismic activity has changed dramatically since the 2011 event, performances of models have been affected very much. In addition, as there is the problem of authorized catalogue related to the completeness magnitude, most models did not pass the CSEP consistency tests. Also, we will discuss the retrospective earthquake forecast experiments for aftershocks of the 2011 Tohoku-oki earthquake. Our aim is to describe what has turned out to be the first occasion for setting up a research environment for rigorous earthquake forecasting in Japan.

Application of a long-range forecasting model to earthquakes in the Japan mainland testing region

NASA Astrophysics Data System (ADS)

Rhoades, David A.

2011-03-01

The Every Earthquake a Precursor According to Scale (EEPAS) model is a long-range forecasting method which has been previously applied to a number of regions, including Japan. The Collaboratory for the Study of Earthquake Predictability (CSEP) forecasting experiment in Japan provides an opportunity to test the model at lower magnitudes than previously and to compare it with other competing models. The model sums contributions to the rate density from past earthquakes based on predictive scaling relations derived from the precursory scale increase phenomenon. Two features of the earthquake catalogue in the Japan mainland region create difficulties in applying the model, namely magnitude-dependence in the proportion of aftershocks and in the Gutenberg-Richter b-value. To accommodate these features, the model was fitted separately to earthquakes in three different target magnitude classes over the period 2000-2009. There are some substantial unexplained differences in parameters between classes, but the time and magnitude distributions of the individual earthquake contributions are such that the model is suitable for three-month testing at M ≥ 4 and for one-year testing at M ≥ 5. In retrospective analyses, the mean probability gain of the EEPAS model over a spatially smoothed seismicity model increases with magnitude. The same trend is expected in prospective testing. The Proximity to Past Earthquakes (PPE) model has been submitted to the same testing classes as the EEPAS model. Its role is that of a spatially-smoothed reference model, against which the performance of time-varying models can be compared.

Japanese earthquake predictability experiment with multiple runs before and after the 2011 Tohoku-oki earthquake

NASA Astrophysics Data System (ADS)

Hirata, N.; Tsuruoka, H.; Yokoi, S.

2013-12-01

The current Japanese national earthquake prediction program emphasizes the importance of modeling as well as monitoring for a sound scientific development of earthquake prediction research. One major focus of the current program is to move toward creating testable earthquake forecast models. For this purpose, in 2009 we joined the Collaboratory for the Study of Earthquake Predictability (CSEP) and installed, through an international collaboration, the CSEP Testing Centre, an infrastructure to encourage researchers to develop testable models for Japan. We started Japanese earthquake predictability experiment on November 1, 2009. The experiment consists of 12 categories, with 4 testing classes with different time spans (1 day, 3 months, 1 year and 3 years) and 3 testing regions called 'All Japan,' 'Mainland,' and 'Kanto.' A total of 160 models, as of August 2013, were submitted, and are currently under the CSEP official suite of tests for evaluating the performance of forecasts. We will present results of prospective forecast and testing for periods before and after the 2011 Tohoku-oki earthquake. Because a seismic activity has changed dramatically since the 2011 event, performances of models have been affected very much. In addition, as there is the problem of authorized catalogue related to the completeness magnitude, most models did not pass the CSEP consistency tests. Also, we will discuss the retrospective earthquake forecast experiments for aftershocks of the 2011 Tohoku-oki earthquake. Our aim is to describe what has turned out to be the first occasion for setting up a research environment for rigorous earthquake forecasting in Japan.

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop

DOE Office of Scientific and Technical Information (OSTI.GOV)

Adams, Paul  D.; Aertgeerts, Kathleen; Bauer, Cary

Crystallographic studies of ligands bound to biological macromolecules (proteins and nucleic acids) represent an important source of information concerning drug-target interactions, providing atomic level insights into the physical chemistry of complex formation between macromolecules and ligands. Of the more than 115,000 entries extant in the Protein Data Bank archive, ~75% include at least one non-polymeric ligand. Ligand geometrical and stereochemical quality, the suitability of ligand models for in silico drug discovery/design, and the goodness-of-fit of ligand models to electron density maps vary widely across the archive. We describe the proceedings and conclusions from the first Worldwide Protein Data Bank/Cambridge Crystallographicmore » Data Centre/Drug Design Data Resource (wwPDB/CCDC/D3R) Ligand Validation Workshop held at the Research Collaboratory for Structural Bioinformatics at Rutgers University on July 30-31, 2015. Experts in protein crystallography from academe and industry came together with non-profit and for-profit software providers for crystallography and with experts in computational chemistry and data archiving to discuss and make recommendations on best practices, as framed by a series of questions central to structural studies of macromolecule-ligand complexes. What data concerning bound ligands should be archived in the Protein Data Bank? How should the ligands be best represented? How should structural models of macromolecule-ligand complexes be validated? What supplementary information should accompany publications of structural studies of biological macromolecules? Consensus recommendations on best practices developed in response to each of these questions are provided, together with some details regarding implementation. Important issues addressed but not resolved at the workshop are also enumerated.« less

A Model For Rapid Estimation of Economic Loss

NASA Astrophysics Data System (ADS)

Holliday, J. R.; Rundle, J. B.

2012-12-01

One of the loftier goals in seismic hazard analysis is the creation of an end-to-end earthquake prediction system: a "rupture to rafters" work flow that takes a prediction of fault rupture, propagates it with a ground shaking model, and outputs a damage or loss profile at a given location. So far, the initial prediction of an earthquake rupture (either as a point source or a fault system) has proven to be the most difficult and least solved step in this chain. However, this may soon change. The Collaboratory for the Study of Earthquake Predictability (CSEP) has amassed a suite of earthquake source models for assorted testing regions worldwide. These models are capable of providing rate-based forecasts for earthquake (point) sources over a range of time horizons. Furthermore, these rate forecasts can be easily refined into probabilistic source forecasts. While it's still difficult to fully assess the "goodness" of each of these models, progress is being made: new evaluation procedures are being devised and earthquake statistics continue to accumulate. The scientific community appears to be heading towards a better understanding of rupture predictability. Ground shaking mechanics are better understood, and many different sophisticated models exists. While these models tend to be computationally expensive and often regionally specific, they do a good job at matching empirical data. It is perhaps time to start addressing the third step in the seismic hazard prediction system. We present a model for rapid economic loss estimation using ground motion (PGA or PGV) and socioeconomic measures as its input. We show that the model can be calibrated on a global scale and applied worldwide. We also suggest how the model can be improved and generalized to non-seismic natural disasters such as hurricane and severe wind storms.

Using Socioeconomic Data to Calibrate Loss Estimates

NASA Astrophysics Data System (ADS)

Holliday, J. R.; Rundle, J. B.

2013-12-01

One of the loftier goals in seismic hazard analysis is the creation of an end-to-end earthquake prediction system: a "rupture to rafters" work flow that takes a prediction of fault rupture, propagates it with a ground shaking model, and outputs a damage or loss profile at a given location. So far, the initial prediction of an earthquake rupture (either as a point source or a fault system) has proven to be the most difficult and least solved step in this chain. However, this may soon change. The Collaboratory for the Study of Earthquake Predictability (CSEP) has amassed a suite of earthquake source models for assorted testing regions worldwide. These models are capable of providing rate-based forecasts for earthquake (point) sources over a range of time horizons. Furthermore, these rate forecasts can be easily refined into probabilistic source forecasts. While it's still difficult to fully assess the "goodness" of each of these models, progress is being made: new evaluation procedures are being devised and earthquake statistics continue to accumulate. The scientific community appears to be heading towards a better understanding of rupture predictability. Ground shaking mechanics are better understood, and many different sophisticated models exists. While these models tend to be computationally expensive and often regionally specific, they do a good job at matching empirical data. It is perhaps time to start addressing the third step in the seismic hazard prediction system. We present a model for rapid economic loss estimation using ground motion (PGA or PGV) and socioeconomic measures as its input. We show that the model can be calibrated on a global scale and applied worldwide. We also suggest how the model can be improved and generalized to non-seismic natural disasters such as hurricane and severe wind storms.

Newly available technologies present expanding opportunities for scientific and technical information exchange

NASA Technical Reports Server (NTRS)

Tolzman, Jean M.

1993-01-01

The potential for expanded communication among researchers, scholars, and students is supported by growth in the capabilities for electronic communication as well as expanding access to various forms of electronic interchange and computing capabilities. Increased possibilities for information exchange, collegial dialogue, collaboration, and access to remote resources exist as high-speed networks, increasingly powerful workstations, and large, multi-user computational facilities are more frequently linked and more commonly available. Numerous writers speak of the telecommunications revolution and its impact on the development and dissemination of knowledge and learning. One author offers the phrase 'Scholarly skywriting' to represent a new form of scientific communication that he envisions using electronic networks. In the United States (U.S.), researchers associated with the National Science Foundation (NSF) are exploring 'nationwide collaboratories' and 'digital collaboration.' Research supported by the U.S. National Aeronautics and Space Administration (NASA) points to a future where workstations with built-in audio, video monitors, and screen sharing protocols are used to support collaborations with colleagues located throughout the world. Instruments and sensors located worldwide will produce data streams that will be brought together, analyzed, and distributed as new findings. Researchers will have access to machines that can supply domain-specific information in addition to locator and directory assistance. New forms of electronic journals will emerge and provide opportunities for researchers and scientists to exchange information electronically and interactively in a range of structures and formats. Ultimately, the wide-scale use of these technologies in the dissemination of research results and the stimulation of collegial dialogue will change the way we represent and express our knowledge of the world. A new paradigm will evolve--perhaps a truly worldwide 'invisible college.'

First Results of the Regional Earthquake Likelihood Models Experiment

USGS Publications Warehouse

Schorlemmer, D.; Zechar, J.D.; Werner, M.J.; Field, E.H.; Jackson, D.D.; Jordan, T.H.

2010-01-01

The ability to successfully predict the future behavior of a system is a strong indication that the system is well understood. Certainly many details of the earthquake system remain obscure, but several hypotheses related to earthquake occurrence and seismic hazard have been proffered, and predicting earthquake behavior is a worthy goal and demanded by society. Along these lines, one of the primary objectives of the Regional Earthquake Likelihood Models (RELM) working group was to formalize earthquake occurrence hypotheses in the form of prospective earthquake rate forecasts in California. RELM members, working in small research groups, developed more than a dozen 5-year forecasts; they also outlined a performance evaluation method and provided a conceptual description of a Testing Center in which to perform predictability experiments. Subsequently, researchers working within the Collaboratory for the Study of Earthquake Predictability (CSEP) have begun implementing Testing Centers in different locations worldwide, and the RELM predictability experiment-a truly prospective earthquake prediction effort-is underway within the U. S. branch of CSEP. The experiment, designed to compare time-invariant 5-year earthquake rate forecasts, is now approximately halfway to its completion. In this paper, we describe the models under evaluation and present, for the first time, preliminary results of this unique experiment. While these results are preliminary-the forecasts were meant for an application of 5 years-we find interesting results: most of the models are consistent with the observation and one model forecasts the distribution of earthquakes best. We discuss the observed sample of target earthquakes in the context of historical seismicity within the testing region, highlight potential pitfalls of the current tests, and suggest plans for future revisions to experiments such as this one. ?? 2010 The Author(s).

Knowledge Acquisition and Management for the NASA Earth Exchange (NEX)

NASA Astrophysics Data System (ADS)

Votava, P.; Michaelis, A.; Nemani, R. R.

2013-12-01

NASA Earth Exchange (NEX) is a data, computing and knowledge collaboratory that houses NASA satellite, climate and ancillary data where a focused community can come together to share modeling and analysis codes, scientific results, knowledge and expertise on a centralized platform with access to large supercomputing resources. As more and more projects are being executed on NEX, we are increasingly focusing on capturing the knowledge of the NEX users and provide mechanisms for sharing it with the community in order to facilitate reuse and accelerate research. There are many possible knowledge contributions to NEX, it can be a wiki entry on the NEX portal contributed by a developer, information extracted from a publication in an automated way, or a workflow captured during code execution on the supercomputing platform. The goal of the NEX knowledge platform is to capture and organize this information and make it easily accessible to the NEX community and beyond. The knowledge acquisition process consists of three main faucets - data and metadata, workflows and processes, and web-based information. Once the knowledge is acquired, it is processed in a number of ways ranging from custom metadata parsers to entity extraction using natural language processing techniques. The processed information is linked with existing taxonomies and aligned with internal ontology (which heavily reuses number of external ontologies). This forms a knowledge graph that can then be used to improve users' search query results as well as provide additional analytics capabilities to the NEX system. Such a knowledge graph will be an important building block in creating a dynamic knowledge base for the NEX community where knowledge is both generated and easily shared.

Final report and recommendations of the ESnet Authentication Pilot Project

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, G.R.; Moore, J.P.; Athey, C.L.

1995-01-01

To conduct their work, U.S. Department of Energy (DOE) researchers require access to a wide range of computing systems and information resources outside of their respective laboratories. Electronically communicating with peers using the global Internet has become a necessity to effective collaboration with university, industrial, and other government partners. DOE`s Energy Sciences Network (ESnet) needs to be engineered to facilitate this {open_quotes}collaboratory{close_quotes} while ensuring the protection of government computing resources from unauthorized use. Sensitive information and intellectual properties must be protected from unauthorized disclosure, modification, or destruction. In August 1993, DOE funded four ESnet sites (Argonne National Laboratory, Lawrence Livermoremore » National Laboratory, the National Energy Research Supercomputer Center, and Pacific Northwest Laboratory) to begin implementing and evaluating authenticated ESnet services using the advanced Kerberos Version 5. The purpose of this project was to identify, understand, and resolve the technical, procedural, cultural, and policy issues surrounding peer-to-peer authentication in an inter-organization internet. The investigators have concluded that, with certain conditions, Kerberos Version 5 is a suitable technology to enable ESnet users to freely share resources and information without compromising the integrity of their systems and data. The pilot project has demonstrated that Kerberos Version 5 is capable of supporting trusted third-party authentication across an inter-organization internet and that Kerberos Version 5 would be practical to implement across the ESnet community within the U.S. The investigators made several modifications to the Kerberos Version 5 system that are necessary for operation in the current Internet environment and have documented other technical shortcomings that must be addressed before large-scale deployment is attempted.« less

Collaborative workbench for cyberinfrastructure to accelerate science algorithm development

NASA Astrophysics Data System (ADS)

Ramachandran, R.; Maskey, M.; Kuo, K.; Lynnes, C.

2013-12-01

There are significant untapped resources for information and knowledge creation within the Earth Science community in the form of data, algorithms, services, analysis workflows or scripts, and the related knowledge about these resources. Despite the huge growth in social networking and collaboration platforms, these resources often reside on an investigator's workstation or laboratory and are rarely shared. A major reason for this is that there are very few scientific collaboration platforms, and those that exist typically require the use of a new set of analysis tools and paradigms to leverage the shared infrastructure. As a result, adoption of these collaborative platforms for science research is inhibited by the high cost to an individual scientist of switching from his or her own familiar environment and set of tools to a new environment and tool set. This presentation will describe an ongoing project developing an Earth Science Collaborative Workbench (CWB). The CWB approach will eliminate this barrier by augmenting a scientist's current research environment and tool set to allow him or her to easily share diverse data and algorithms. The CWB will leverage evolving technologies such as commodity computing and social networking to design an architecture for scalable collaboration that will support the emerging vision of an Earth Science Collaboratory. The CWB is being implemented on the robust and open source Eclipse framework and will be compatible with widely used scientific analysis tools such as IDL. The myScience Catalog built into CWB will capture and track metadata and provenance about data and algorithms for the researchers in a non-intrusive manner with minimal overhead. Seamless interfaces to multiple Cloud services will support sharing algorithms, data, and analysis results, as well as access to storage and computer resources. A Community Catalog will track the use of shared science artifacts and manage collaborations among researchers.

Life in the fast lane for protein crystallization and X-ray crystallography

NASA Technical Reports Server (NTRS)

Pusey, Marc L.; Liu, Zhi-Jie; Tempel, Wolfram; Praissman, Jeremy; Lin, Dawei; Wang, Bi-Cheng; Gavira, Jose A.; Ng, Joseph D.

2005-01-01

The common goal for structural genomic centers and consortiums is to decipher as quickly as possible the three-dimensional structures for a multitude of recombinant proteins derived from known genomic sequences. Since X-ray crystallography is the foremost method to acquire atomic resolution for macromolecules, the limiting step is obtaining protein crystals that can be useful of structure determination. High-throughput methods have been developed in recent years to clone, express, purify, crystallize and determine the three-dimensional structure of a protein gene product rapidly using automated devices, commercialized kits and consolidated protocols. However, the average number of protein structures obtained for most structural genomic groups has been very low compared to the total number of proteins purified. As more entire genomic sequences are obtained for different organisms from the three kingdoms of life, only the proteins that can be crystallized and whose structures can be obtained easily are studied. Consequently, an astonishing number of genomic proteins remain unexamined. In the era of high-throughput processes, traditional methods in molecular biology, protein chemistry and crystallization are eclipsed by automation and pipeline practices. The necessity for high-rate production of protein crystals and structures has prevented the usage of more intellectual strategies and creative approaches in experimental executions. Fundamental principles and personal experiences in protein chemistry and crystallization are minimally exploited only to obtain "low-hanging fruit" protein structures. We review the practical aspects of today's high-throughput manipulations and discuss the challenges in fast pace protein crystallization and tools for crystallography. Structural genomic pipelines can be improved with information gained from low-throughput tactics that may help us reach the higher-bearing fruits. Examples of recent developments in this area are reported from the efforts of the Southeast Collaboratory for Structural Genomics (SECSG).

Life in the Fast Lane for Protein Crystallization and X-Ray Crystallography

NASA Technical Reports Server (NTRS)

Pusey, Marc L.; Liu, Zhi-Jie; Tempel, Wolfram; Praissman, Jeremy; Lin, Dawei; Wang, Bi-Cheng; Gavira, Jose A.; Ng, Joseph D.

2004-01-01

The common goal for structural genomic centers and consortiums is to decipher as quickly as possible the three-dimensional structures for a multitude of recombinant proteins derived from known genomic sequences. Since X-ray crystallography is the foremost method to acquire atomic resolution for macromolecules, the limiting step is obtaining protein crystals that can be useful of structure determination. High-throughput methods have been developed in recent years to clone, express, purify, crystallize and determine the three-dimensional structure of a protein gene product rapidly using automated devices, commercialized kits and consolidated protocols. However, the average number of protein structures obtained for most structural genomic groups has been very low compared to the total number of proteins purified. As more entire genomic sequences are obtained for different organisms from the three kingdoms of life, only the proteins that can be crystallized and whose structures can be obtained easily are studied. Consequently, an astonishing number of genomic proteins remain unexamined. In the era of high-throughput processes, traditional methods in molecular biology, protein chemistry and crystallization are eclipsed by automation and pipeline practices. The necessity for high rate production of protein crystals and structures has prevented the usage of more intellectual strategies and creative approaches in experimental executions. Fundamental principles and personal experiences in protein chemistry and crystallization are minimally exploited only to obtain "low-hanging fruit" protein structures. We review the practical aspects of today s high-throughput manipulations and discuss the challenges in fast pace protein crystallization and tools for crystallography. Structural genomic pipelines can be improved with information gained from low-throughput tactics that may help us reach the higher-bearing fruits. Examples of recent developments in this area are reported from the efforts of the Southeast Collaboratory for Structural Genomics (SECSG).

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop

DOE PAGES

Adams, Paul  D.; Aertgeerts, Kathleen; Bauer, Cary; ...

2016-04-05

Crystallographic studies of ligands bound to biological macromolecules (proteins and nucleic acids) represent an important source of information concerning drug-target interactions, providing atomic level insights into the physical chemistry of complex formation between macromolecules and ligands. Of the more than 115,000 entries extant in the Protein Data Bank archive, ~75% include at least one non-polymeric ligand. Ligand geometrical and stereochemical quality, the suitability of ligand models for in silico drug discovery/design, and the goodness-of-fit of ligand models to electron density maps vary widely across the archive. We describe the proceedings and conclusions from the first Worldwide Protein Data Bank/Cambridge Crystallographicmore » Data Centre/Drug Design Data Resource (wwPDB/CCDC/D3R) Ligand Validation Workshop held at the Research Collaboratory for Structural Bioinformatics at Rutgers University on July 30-31, 2015. Experts in protein crystallography from academe and industry came together with non-profit and for-profit software providers for crystallography and with experts in computational chemistry and data archiving to discuss and make recommendations on best practices, as framed by a series of questions central to structural studies of macromolecule-ligand complexes. What data concerning bound ligands should be archived in the Protein Data Bank? How should the ligands be best represented? How should structural models of macromolecule-ligand complexes be validated? What supplementary information should accompany publications of structural studies of biological macromolecules? Consensus recommendations on best practices developed in response to each of these questions are provided, together with some details regarding implementation. Important issues addressed but not resolved at the workshop are also enumerated.« less

A Multiwavelength Study of Nearby Millisecond Pulsar PSR J1400-1431: Improved Astrometry and an Optical Detection of Its Cool White Dwarf Companion

NASA Astrophysics Data System (ADS)

Swiggum, J. K.; Kaplan, D. L.; McLaughlin, M. A.; Lorimer, D. R.; Bogdanov, S.; Ray, P. S.; Lynch, R.; Gentile, P.; Rosen, R.; Heatherly, S. A.; Barlow, B. N.; Hegedus, R. J.; Vasquez Soto, A.; Clancy, P.; Kondratiev, V. I.; Stovall, K.; Istrate, A.; Penprase, B.; Bellm, E. C.

2017-09-01

In 2012, five high-school students involved in the Pulsar Search Collaboratory discovered the millisecond pulsar (MSP) PSR J1400-1431, and initial timing parameters were published in Rosen et al. a year later. Since then, we have obtained a phase-connected timing solution spanning five years, resolving a significant position discrepancy and measuring \\dot{P}, proper motion, parallax, and a monotonic slope in dispersion measure over time. Due to PSR J1400-1431’s proximity and significant proper motion, we use the Shklovskii effect and other priors to determine a 95% confidence interval for PSR J1400-1431’s distance, d={270}-80+130 pc. With an improved timing position, we present the first detection of the pulsar’s low-mass white dwarf (WD) companion using the Goodman Spectrograph on the 4.1 m SOAR telescope. Deeper imaging suggests that it is a cool DA-type WD with {T}{eff}=3000+/- 100 K and R/{R}⊙ =(2.19+/- 0.03)× {10}-2 (d/270 {pc}). We show a convincing association between PSR J1400-1431 and a γ-ray point source, 3FGL J1400.5-1437, but only weak (3.3σ) evidence of pulsations after folding γ-ray photons using our radio timing model. We detect an X-ray counterpart with XMM-Newton, but the measured X-ray luminosity (1×1029 erg s-1) makes PSR J1400-1431 the least X-ray luminous rotation-powered MSP detected to date. Together, our findings present a consistent picture of a nearby (d≈ 230 pc) MSP in a 9.5-day orbit around a cool ˜0.3 M ⊙ WD companion, with orbital inclination I≳ 60^\\circ .

Multicomponent ensemble models to forecast induced seismicity

NASA Astrophysics Data System (ADS)

Király-Proag, E.; Gischig, V.; Zechar, J. D.; Wiemer, S.

2018-01-01

In recent years, human-induced seismicity has become a more and more relevant topic due to its economic and social implications. Several models and approaches have been developed to explain underlying physical processes or forecast induced seismicity. They range from simple statistical models to coupled numerical models incorporating complex physics. We advocate the need for forecast testing as currently the best method for ascertaining if models are capable to reasonably accounting for key physical governing processes—or not. Moreover, operational forecast models are of great interest to help on-site decision-making in projects entailing induced earthquakes. We previously introduced a standardized framework following the guidelines of the Collaboratory for the Study of Earthquake Predictability, the Induced Seismicity Test Bench, to test, validate, and rank induced seismicity models. In this study, we describe how to construct multicomponent ensemble models based on Bayesian weightings that deliver more accurate forecasts than individual models in the case of Basel 2006 and Soultz-sous-Forêts 2004 enhanced geothermal stimulation projects. For this, we examine five calibrated variants of two significantly different model groups: (1) Shapiro and Smoothed Seismicity based on the seismogenic index, simple modified Omori-law-type seismicity decay, and temporally weighted smoothed seismicity; (2) Hydraulics and Seismicity based on numerically modelled pore pressure evolution that triggers seismicity using the Mohr-Coulomb failure criterion. We also demonstrate how the individual and ensemble models would perform as part of an operational Adaptive Traffic Light System. Investigating seismicity forecasts based on a range of potential injection scenarios, we use forecast periods of different durations to compute the occurrence probabilities of seismic events M ≥ 3. We show that in the case of the Basel 2006 geothermal stimulation the models forecast hazardous levels of seismicity days before the occurrence of felt events.

Towards an Earth System Knowledge Environment Designed to Promote More Usable Science

NASA Astrophysics Data System (ADS)

Killeen, T. L.

2006-12-01

It is abundantly clear that fundamental decisions about how to manage future human society will need to be informed by quantitative scientific analyses of processes, options, impacts, and responses. In fact, one could argue that the human experience into the foreseeable future will increasingly be tied to the integrating of information, understanding, and experiences to create knowledge and with it solutions to emerging problems as well as opportunities for further progress. This is particularly true for the Geosciences. Our scientific field, and by extension our Union, has a special responsibility for informing policy makers and the public about how the earth system functions and about the relationship between environmental stressors and human activities. In this regard, a greatly improved working interface between natural and social scientists is needed. In this talk, I argue that something like an "Earth System Knowledge Environment" or "Earth System Collaboratory" should be developed using modern information technologies to encapsulate and make accessible existing and emerging interdisciplinary knowledge of particular use to decision makers. Such a "work place" should be open to all and could provide access to observations, models and theories in ways that more easily allow for credible scientific understanding to be translated into policy options at all levels. Examples of fledgling efforts along these lines will be cited in areas such as severe weather impacts and climate change. The challenges involved in creating more usable scientific knowledge are, of course, quite significant and include major issues such as: institutional impediments to interdisciplinary research, the role of proprietary interests, the difficulties involved in working across the natural/social science boundary, and the challenge of developing the kind of human capital needed to effectively close the gap between good science and public policy.

First Results of the Regional Earthquake Likelihood Models Experiment

NASA Astrophysics Data System (ADS)

Schorlemmer, Danijel; Zechar, J. Douglas; Werner, Maximilian J.; Field, Edward H.; Jackson, David D.; Jordan, Thomas H.

2010-08-01

The ability to successfully predict the future behavior of a system is a strong indication that the system is well understood. Certainly many details of the earthquake system remain obscure, but several hypotheses related to earthquake occurrence and seismic hazard have been proffered, and predicting earthquake behavior is a worthy goal and demanded by society. Along these lines, one of the primary objectives of the Regional Earthquake Likelihood Models (RELM) working group was to formalize earthquake occurrence hypotheses in the form of prospective earthquake rate forecasts in California. RELM members, working in small research groups, developed more than a dozen 5-year forecasts; they also outlined a performance evaluation method and provided a conceptual description of a Testing Center in which to perform predictability experiments. Subsequently, researchers working within the Collaboratory for the Study of Earthquake Predictability (CSEP) have begun implementing Testing Centers in different locations worldwide, and the RELM predictability experiment—a truly prospective earthquake prediction effort—is underway within the U.S. branch of CSEP. The experiment, designed to compare time-invariant 5-year earthquake rate forecasts, is now approximately halfway to its completion. In this paper, we describe the models under evaluation and present, for the first time, preliminary results of this unique experiment. While these results are preliminary—the forecasts were meant for an application of 5 years—we find interesting results: most of the models are consistent with the observation and one model forecasts the distribution of earthquakes best. We discuss the observed sample of target earthquakes in the context of historical seismicity within the testing region, highlight potential pitfalls of the current tests, and suggest plans for future revisions to experiments such as this one.

Vroom: designing an augmented environment for remote collaboration in digital cinema production

NASA Astrophysics Data System (ADS)

Margolis, Todd; Cornish, Tracy

2013-03-01

As media technologies become increasingly affordable, compact and inherently networked, new generations of telecollaborative platforms continue to arise which integrate these new affordances. Virtual reality has been primarily concerned with creating simulations of environments that can transport participants to real or imagined spaces that replace the "real world". Meanwhile Augmented Reality systems have evolved to interleave objects from Virtual Reality environments into the physical landscape. Perhaps now there is a new class of systems that reverse this precept to enhance dynamic media landscapes and immersive physical display environments to enable intuitive data exploration through collaboration. Vroom (Virtual Room) is a next-generation reconfigurable tiled display environment in development at the California Institute for Telecommunications and Information Technology (Calit2) at the University of California, San Diego. Vroom enables freely scalable digital collaboratories, connecting distributed, high-resolution visualization resources for collaborative work in the sciences, engineering and the arts. Vroom transforms a physical space into an immersive media environment with large format interactive display surfaces, video teleconferencing and spatialized audio built on a highspeed optical network backbone. Vroom enables group collaboration for local and remote participants to share knowledge and experiences. Possible applications include: remote learning, command and control, storyboarding, post-production editorial review, high resolution video playback, 3D visualization, screencasting and image, video and multimedia file sharing. To support these various scenarios, Vroom features support for multiple user interfaces (optical tracking, touch UI, gesture interface, etc.), support for directional and spatialized audio, giga-pixel image interactivity, 4K video streaming, 3D visualization and telematic production. This paper explains the design process that has been utilized to make Vroom an accessible and intuitive immersive environment for remote collaboration specifically for digital cinema production.

ASDC Collaborations and Processes to Ensure Quality Metadata and Consistent Data Availability

NASA Astrophysics Data System (ADS)

Trapasso, T. J.

2017-12-01

With the introduction of new tools, faster computing, and less expensive storage, increased volumes of data are expected to be managed with existing or fewer resources. Metadata management is becoming a heightened challenge from the increase in data volume, resulting in more metadata records needed to be curated for each product. To address metadata availability and completeness, NASA ESDIS has taken significant strides with the creation of the United Metadata Model (UMM) and Common Metadata Repository (CMR). These UMM helps address hurdles experienced by the increasing number of metadata dialects and the CMR provides a primary repository for metadata so that required metadata fields can be served through a growing number of tools and services. However, metadata quality remains an issue as metadata is not always inherent to the end-user. In response to these challenges, the NASA Atmospheric Science Data Center (ASDC) created the Collaboratory for quAlity Metadata Preservation (CAMP) and defined the Product Lifecycle Process (PLP) to work congruently. CAMP is unique in that it provides science team members a UI to directly supply metadata that is complete, compliant, and accurate for their data products. This replaces back-and-forth communication that often results in misinterpreted metadata. Upon review by ASDC staff, metadata is submitted to CMR for broader distribution through Earthdata. Further, approval of science team metadata in CAMP automatically triggers the ASDC PLP workflow to ensure appropriate services are applied throughout the product lifecycle. This presentation will review the design elements of CAMP and PLP as well as demonstrate interfaces to each. It will show the benefits that CAMP and PLP provide to the ASDC that could potentially benefit additional NASA Earth Science Data and Information System (ESDIS) Distributed Active Archive Centers (DAACs).

QuakeML: Status of the XML-based Seismological Data Exchange Format

NASA Astrophysics Data System (ADS)

Euchner, Fabian; Schorlemmer, Danijel; Kästli, Philipp; Quakeml Working Group

2010-05-01

QuakeML is an XML-based data exchange standard for seismology that is in its fourth year of active community-driven development. The current release (version 1.2) is based on a public Request for Comments process that included contributions from ETH, GFZ, USC, SCEC, USGS, IRIS DMC, EMSC, ORFEUS, GNS, ZAMG, BRGM, Nanometrics, and ISTI. QuakeML has mainly been funded through the EC FP6 infrastructure project NERIES, in which it was endorsed as the preferred data exchange format. Currently, QuakeML services are being installed at several institutions around the globe, including EMSC, ORFEUS, ETH, Geoazur (Europe), NEIC, ANSS, SCEC/SCSN (USA), and GNS Science (New Zealand). Some of these institutions already provide QuakeML earthquake catalog web services. Several implementations of the QuakeML data model have been made. QuakePy, an open-source Python-based seismicity analysis toolkit using the QuakeML data model, is being developed at ETH. QuakePy is part of the software stack used in the Collaboratory for the Study of Earthquake Predictability (CSEP) testing center installations, developed by SCEC. Furthermore, the QuakeML data model is part of the SeisComP3 package from GFZ Potsdam. QuakeML is designed as an umbrella schema under which several sub-packages are collected. The present scope of QuakeML 1.2 covers a basic description of seismic events including picks, arrivals, amplitudes, magnitudes, origins, focal mechanisms, and moment tensors. Work on additional packages (macroseismic information, seismic inventory, and resource metadata) has been started, but is at an early stage. Contributions from the community that help to widen the thematic coverage of QuakeML are highly welcome. Online resources: http://www.quakeml.org, http://www.quakepy.org

Prospective Evaluation of the Global Earthquake Activity Rate Model (GEAR1) Earthquake Forecast: Preliminary Results

NASA Astrophysics Data System (ADS)

Strader, Anne; Schorlemmer, Danijel; Beutin, Thomas

2017-04-01

The Global Earthquake Activity Rate Model (GEAR1) is a hybrid seismicity model, constructed from a loglinear combination of smoothed seismicity from the Global Centroid Moment Tensor (CMT) earthquake catalog and geodetic strain rates (Global Strain Rate Map, version 2.1). For the 2005-2012 retrospective evaluation period, GEAR1 outperformed both parent strain rate and smoothed seismicity forecasts. Since 1. October 2015, GEAR1 has been prospectively evaluated by the Collaboratory for the Study of Earthquake Predictability (CSEP) testing center. Here, we present initial one-year test results of the GEAR1, GSRM and GSRM2.1, as well as localized evaluation of GEAR1 performance. The models were evaluated on the consistency in number (N-test), spatial (S-test) and magnitude (M-test) distribution of forecasted and observed earthquakes, as well as overall data consistency (CL-, L-tests). Performance at target earthquake locations was compared between models using the classical paired T-test and its non-parametric equivalent, the W-test, to determine if one model could be rejected in favor of another at the 0.05 significance level. For the evaluation period from 1. October 2015 to 1. October 2016, the GEAR1, GSRM and GSRM2.1 forecasts pass all CSEP likelihood tests. Comparative test results show statistically significant improvement of GEAR1 performance over both strain rate-based forecasts, both of which can be rejected in favor of GEAR1. Using point process residual analysis, we investigate the spatial distribution of differences in GEAR1, GSRM and GSRM2 model performance, to identify regions where the GEAR1 model should be adjusted, that could not be inferred from CSEP test results. Furthermore, we investigate whether the optimal combination of smoothed seismicity and strain rates remains stable over space and time.

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop.

PubMed

Adams, Paul D; Aertgeerts, Kathleen; Bauer, Cary; Bell, Jeffrey A; Berman, Helen M; Bhat, Talapady N; Blaney, Jeff M; Bolton, Evan; Bricogne, Gerard; Brown, David; Burley, Stephen K; Case, David A; Clark, Kirk L; Darden, Tom; Emsley, Paul; Feher, Victoria A; Feng, Zukang; Groom, Colin R; Harris, Seth F; Hendle, Jorg; Holder, Thomas; Joachimiak, Andrzej; Kleywegt, Gerard J; Krojer, Tobias; Marcotrigiano, Joseph; Mark, Alan E; Markley, John L; Miller, Matthew; Minor, Wladek; Montelione, Gaetano T; Murshudov, Garib; Nakagawa, Atsushi; Nakamura, Haruki; Nicholls, Anthony; Nicklaus, Marc; Nolte, Robert T; Padyana, Anil K; Peishoff, Catherine E; Pieniazek, Susan; Read, Randy J; Shao, Chenghua; Sheriff, Steven; Smart, Oliver; Soisson, Stephen; Spurlino, John; Stouch, Terry; Svobodova, Radka; Tempel, Wolfram; Terwilliger, Thomas C; Tronrud, Dale; Velankar, Sameer; Ward, Suzanna C; Warren, Gregory L; Westbrook, John D; Williams, Pamela; Yang, Huanwang; Young, Jasmine

2016-04-05

Crystallographic studies of ligands bound to biological macromolecules (proteins and nucleic acids) represent an important source of information concerning drug-target interactions, providing atomic level insights into the physical chemistry of complex formation between macromolecules and ligands. Of the more than 115,000 entries extant in the Protein Data Bank (PDB) archive, ∼75% include at least one non-polymeric ligand. Ligand geometrical and stereochemical quality, the suitability of ligand models for in silico drug discovery and design, and the goodness-of-fit of ligand models to electron-density maps vary widely across the archive. We describe the proceedings and conclusions from the first Worldwide PDB/Cambridge Crystallographic Data Center/Drug Design Data Resource (wwPDB/CCDC/D3R) Ligand Validation Workshop held at the Research Collaboratory for Structural Bioinformatics at Rutgers University on July 30-31, 2015. Experts in protein crystallography from academe and industry came together with non-profit and for-profit software providers for crystallography and with experts in computational chemistry and data archiving to discuss and make recommendations on best practices, as framed by a series of questions central to structural studies of macromolecule-ligand complexes. What data concerning bound ligands should be archived in the PDB? How should the ligands be best represented? How should structural models of macromolecule-ligand complexes be validated? What supplementary information should accompany publications of structural studies of biological macromolecules? Consensus recommendations on best practices developed in response to each of these questions are provided, together with some details regarding implementation. Important issues addressed but not resolved at the workshop are also enumerated. Copyright © 2016 Elsevier Ltd. All rights reserved.

Outcome of the first wwPDB/CCDC/D3R Ligand Validation Workshop

PubMed Central

Adams, Paul D.; Aertgeerts, Kathleen; Bauer, Cary; Bell, Jeffrey A.; Berman, Helen M.; Bhat, Talapady N.; Blaney, Jeff; Bolton, Evan; Bricogne, Gerard; Brown, David; Burley, Stephen K.; Case, David A.; Clark, Kirk L.; Darden, Tom; Emsley, Paul; Feher, Victoria A.; Feng, Zukang; Groom, Colin R.; Harris, Seth F.; Hendle, Jorg; Holder, Thomas; Joachimiak, Andrzej; Kleywegt, Gerard J.; Krojer, Tobias; Marcotrigiano, Joseph; Mark, Alan E.; Markley, John L.; Miller, Matthew; Minor, Wladek; Montelione, Gaetano T.; Murshudov, Garib; Nakagawa, Atsushi; Nakamura, Haruki; Nicholls, Anthony; Nicklaus, Marc; Nolte, Robert T.; Padyana, Anil K.; Peishoff, Catherine E.; Pieniazek, Susan; Read, Randy J.; Shao, Chenghua; Sheriff, Steven; Smart, Oliver; Soisson, Stephen; Spurlino, John; Stouch, Terry; Svobodova, Radka; Tempel, Wolfram; Terwilliger, Thomas C.; Tronrud, Dale; Velankar, Sameer; Ward, Suzanna; Warren, Gregory L.; Westbrook, John D.; Williams, Pamela; Yang, Huanwang; Young, Jasmine

2016-01-01

Summary Crystallographic studies of ligands bound to biological macromolecules (proteins and nucleic acids) represent an important source of information concerning drug-target interactions, providing atomic level insights into the physical chemistry of complex formation between macromolecules and ligands. Of the more than 115,000 entries extant in the Protein Data Bank archive, ~75% include at least one non-polymeric ligand. Ligand geometrical and stereochemical quality, the suitability of ligand models for in silico drug discovery/design, and the goodness-of-fit of ligand models to electron density maps vary widely across the archive. We describe the proceedings and conclusions from the first Worldwide Protein Data Bank/Cambridge Crystallographic Data Centre/Drug Design Data Resource (wwPDB/CCDC/D3R) Ligand Validation Workshop held at the Research Collaboratory for Structural Bioinformatics at Rutgers University on July 30–31, 2015. Experts in protein crystallography from academe and industry came together with non-profit and for-profit software providers for crystallography and with experts in computational chemistry and data archiving to discuss and make recommendations on best practices, as framed by a series of questions central to structural studies of macromolecule-ligand complexes. What data concerning bound ligands should be archived in the Protein Data Bank? How should the ligands be best represented? How should structural models of macromolecule-ligand complexes be validated? What supplementary information should accompany publications of structural studies of biological macromolecules? Consensus recommendations on best practices developed in response to each of these questions are provided, together with some details regarding implementation. Important issues addressed but not resolved at the workshop are also enumerated. PMID:27050687

Identification of Inhibitors against Metastasis Protein “Survivin:” In silico Discovery Using Virtual Screening and Molecular Docking Studies

PubMed Central

Mishra, Swechha; Singh, Sangeeta

2017-01-01

Background: In experimental therapy of cancer, survivin is considered to be one of the well-established targets. Studies have found that it is overexpression in most of the human tumors, but it is rarely found in normal tissues. It is having varied structural and functional role. It controls cell division and cellular stress response and also regulates metastasis and migration of cancerous cells. It has also been recognized as a biomarker which makes it unconventional drug target. In spite of being one of the centrally active components in metastasis and invasion, their clinical use is minimal. To increase the therapeutic efficiency of cancer and its various stages, it is important to survey novel reagents targeting the pathways and mechanism involving survivin. Objective: The aim of this study was to identify novel survivin inhibitor candidates using in silico screening. Materials and Methods: In this course of work, virtual screening on a dataset of natural compounds retrieved from ZINC and other libraries were performed. Comparative analysis of the protein was done by studying the binding affinity of inhibitors that are already available. The best interacting complex was set for molecular dynamics simulation for 25 ns to validate the stability of system. These molecules were checked for their toxicity and absorption, distribution, metabolism, excretion, and toxicity (ADMET) properties using OSIRIS and pre-ADMET tools. Results: We discovered ten such candidates with better binding efficiency with survivin in comparison to marketed chemical against the same. Furthermore, these inhibitor candidates did not induce cell toxicity. Binding affinity of reference molecules was varied from −6.8 to −8.5 kcal/mol while that of top scoring compound ZINC00689728 is −9.3 kcal/mol binding energy. Good placement and strong bond formation of selected molecule was observed during course of work. It is also having permissible ADMET property. Conclusion: Considering all the parameters, the screened molecule can be considered as a potential lead compound for designing new drug against survivin. Further investigation and testing will be required to make it to the final stage. SUMMARY Survivin is one of the important protein of metastasis. Inhibiting survivin might led to the increased therapeutic efficiency of cancer. In this work we are screening library of natural compounds in view of finding some potent inhibitor against survivin. Abbreviations used: MD: Molecular dynamics, LogS: Aqueous solubility, Acceptor HB: Hydrogen bond acceptor, Donor HB: Donor hydrogen bond donor, ADMET: Absorption, distribution, metabolism, excretion, and toxicity, RCSB: Research Collaboratory for Structural Bioinformatics, OPLS: Optimized potentials for liquid simulations, RMSD: Root-mean-square deviation. PMID:29491627

Decentralized Data Sharing of Tissue Microarrays for Investigative Research in Oncology

PubMed Central

Chen, Wenjin; Schmidt, Cristina; Parashar, Manish; Reiss, Michael; Foran, David J.

2007-01-01

Tissue microarray technology (TMA) is a relatively new approach for efficiently and economically assessing protein and gene expression across large ensembles of tissue specimens. Tissue microarray technology holds great potential for reducing the time and cost associated with conducting research in tissue banking, proteomics, and outcome studies. However, the sheer volume of images and other data generated from even limited studies involving tissue microarrays quickly approach the processing capacity and resources of a division or department. This challenge is compounded by the fact that large-scale projects in several areas of modern research rely upon multi-institutional efforts in which investigators and resources are spread out over multiple campuses, cities, and states. To address some of the data management issues several leading institutions have begun to develop their own “in-house” systems, independently, but such data will be only minimally useful if it isn’t accessible to others in the scientific community. Investigators at different institutions studying the same or related disorders might benefit from the synergy of sharing results. To facilitate sharing of TMA data across different database implementations, the Technical Standards Committee of the Association for Pathology Informatics organized workshops in efforts to establish a standardized TMA data exchange specification. The focus of our research does not relate to the establishment of standards for exchange, but rather builds on these efforts and concentrates on the design, development and deployment of a decentralized collaboratory for the unsupervised characterization, and seamless and secure discovery and sharing of TMA data. Specifically, we present a self-organizing, peer-to-peer indexing and discovery infrastructure for quantitatively assessing digitized TMA’s. The system utilizes a novel, optimized decentralized search engine that supports flexible querying, while guaranteeing that once information has been stored in the system, it will be found with bounded costs. PMID:19081778

An Integrated Cyberenvironment for Event-Driven Environmental Observatory Research and Education

NASA Astrophysics Data System (ADS)

Myers, J.; Minsker, B.; Butler, R.

2006-12-01

National environmental observatories will soon provide large-scale data from diverse sensor networks and community models. While much attention is focused on piping data from sensors to archives and users, truly integrating these resources into the everyday research activities of scientists and engineers across the community, and enabling their results and innovations to be brought back into the observatory, also critical to long-term success of the observatories, is often neglected. This talk will give an overview of the Environmental Cyberinfrastructure Demonstrator (ECID) Cyberenvironment for observatory-centric environmental research and education, under development at the National Center for Supercomputing Applications (NCSA), which is designed to address these issues. Cyberenvironments incorporate collaboratory and grid technologies, web services, and other cyberinfrastructure into an overall framework that balances needs for efficient coordination and the ability to innovate. They are designed to support the full scientific lifecycle both in terms of individual experiments moving from data to workflows to publication and at the macro level where new discoveries lead to additional data, models, tools, and conceptual frameworks that augment and evolve community-scale systems such as observatories. The ECID cyberenvironment currently integrates five major components a collaborative portal, workflow engine, event manager, metadata repository, and social network personalization capabilities - that have novel features inspired by the Cyberenvironment concept and enabling powerful environmental research scenarios. A summary of these components and the overall cyberenvironment will be given in this talk, while other posters will give details on several of the components. The summary will be presented within the context of environmental use case scenarios created in collaboration with researchers from the WATERS (WATer and Environmental Research Systems) Network, a joint National Science Foundation-funded initiative of the hydrology and environmental engineering communities. The use case scenarios include identifying sensor anomalies in point- and streaming sensor data and notifying data managers in near-real time; and referring users of data or data products (e.g., workflows, publications) to related data or data products.

Connecting Provenance with Semantic Descriptions in the NASA Earth Exchange (NEX)

NASA Astrophysics Data System (ADS)

Votava, P.; Michaelis, A.; Nemani, R. R.

2012-12-01

NASA Earth Exchange (NEX) is a data, modeling and knowledge collaboratory that houses NASA satellite data, climate data and ancillary data where a focused community may come together to share modeling and analysis codes, scientific results, knowledge and expertise on a centralized platform. Some of the main goals of NEX are transparency and repeatability and to that extent we have been adding components that enable tracking of provenance of both scientific processes and datasets produced by these processes. As scientific processes become more complex, they are often developed collaboratively and it becomes increasingly important for the research team to be able to track the development of the process and the datasets that are produced along the way. Additionally, we want to be able to link the processes and the datasets developed on NEX to an existing information and knowledge, so that the users can query and compare the provenance of any dataset or process with regard to the component-specific attributes such as data quality, geographic location, related publications, user comments and annotations etc. We have developed several ontologies that describe datasets and workflow components available on NEX using the OWL ontology language as well as a simple ontology that provides linking mechanism to the collected provenance information. The provenance is captured in two ways - we utilize existing provenance infrastructure of VisTrails, which is used as a workflow engine on NEX, and we extend the captured provenance using the PROV data model expressed through the PROV-O ontology. We do this in order to link and query the provenance easier in the context of the existing NEX information and knowledge. The captured provenance graph is processed and stored using RDFlib with MySQL backend that can be queried using either RDFLib or SPARQL. As a concrete example, we show how this information is captured during anomaly detection process in large satellite datasets.

Ecophysiological Changes in Microbial Mats Incubated in a Greenhouse Collaboratory

NASA Technical Reports Server (NTRS)

Bebout, Brad; DesMarais, David J.; GarciaPichel, Ferran; Hogan, Mary; Jahnke, Linda; Keller, Richard M.; Miller, Scott R.

2001-01-01

Microbial mats are modern examples of the earliest microbial communities known. Among the best studied are microbial mats growing in hypersaline ponds managed for the production of salt by Exportadora de Sal, S.A. de C.V., Guerrero Negro, Baja California Sur, Mexico. In May, 2001, we collected mats from Ponds 4 and 5 in this system and returned them to Ames Research Center, where they have been maintained for a period of over nine months. We report here on both the ecophysiological changes occurring in the mats over that period of time as well as the facility in which they were incubated. Mats (approximately 1 sq. meter total area) were incubated in a greenhouse facility modified to provide the mats with natural levels of visible and ultraviolet radiation as well as constantly flowing, temperature-controlled water. Two replicated treatments were maintained, a 'high salinity' treatment (about 120 ppt) and a 'low salinity' treatment (about 90 ppt). Rates of net biological activity (e.g., photosynthesis, respiration, trace gas production) in the mats were relatively constant over the several months, and were similar to rates of activity measured in the field. However, over the course of the incubation, mats in both treatments changed in physical appearance. The most obvious change was that mats in the higher salinity treatments developed a higher proportion of carotenoid pigments (relative to chlorophyll), resulting in a noticeably orange color in the high salinity mats. This trend is also seen in the natural salinity gradient present at the field site. Changes in the community composition of the mats, as assayed by denaturing gradient gel electrophoresis (DGGE), as well as biomarker compounds produced in the mats were also monitored. The degree to which the mats kept in the greenhouse changed from the originally collected mats, as well as differences between high and low salinity mats will be discussed. Additional information is contained in the original extended abstract.

Secure Peer-to-Peer Networks for Scientific Information Sharing

NASA Technical Reports Server (NTRS)

Karimabadi, Homa

2012-01-01

The most common means of remote scientific collaboration today includes the trio of e-mail for electronic communication, FTP for file sharing, and personalized Web sites for dissemination of papers and research results. With the growth of broadband Internet, there has been a desire to share large files (movies, files, scientific data files) over the Internet. Email has limits on the size of files that can be attached and transmitted. FTP is often used to share large files, but this requires the user to set up an FTP site for which it is hard to set group privileges, it is not straightforward for everyone, and the content is not searchable. Peer-to-peer technology (P2P), which has been overwhelmingly successful in popular content distribution, is the basis for development of a scientific collaboratory called Scientific Peer Network (SciPerNet). This technology combines social networking with P2P file sharing. SciPerNet will be a standalone application, written in Java and Swing, thus insuring portability to a number of different platforms. Some of the features include user authentication, search capability, seamless integration with a data center, the ability to create groups and social networks, and on-line chat. In contrast to P2P networks such as Gnutella, Bit Torrent, and others, SciPerNet incorporates three design elements that are critical to application of P2P for scientific purposes: User authentication, Data integrity validation, Reliable searching SciPerNet also provides a complementary solution to virtual observatories by enabling distributed collaboration and sharing of downloaded and/or processed data among scientists. This will, in turn, increase scientific returns from NASA missions. As such, SciPerNet can serve a two-fold purpose for NASA: a cost-savings software as well as a productivity tool for scientists working with data from NASA missions.

Evaluation of In Silico Anti-parkinson potential of β-asarone.

PubMed

Gupta, Meenakshi; Kant, Kamal; Sharma, Ruchika; Kumar, Anoop

2018-04-16

Parkinson's disease is affecting millions of people worldwide. The prevalence of Parkinson's disease is 0.3% globally, rising to 1% in more than 60 years of age and 4% in more than 80 years of age and the figures are thought to be doubled by 2030. Thus, there is a great need to identify novel therapeutic strategies or candidate drug molecule which can rescue neuronal degeneration. β-asarone has potential to act as a neuroprotective agent but regarding its role in Parkinson disease, very few reports are available. Thus, this study was undertaken to unlock the potential of β-asarone against Parkinson's disease. The Absorption, Distribution, Metabolism, and Excretion (ADME) analysis has been done by using Swiss ADME Predictor. The interactions of β-asarone towards dopaminergic receptors were investigated by Glide Program 5.0. The crystal structures of dopamine receptors were retrieved from Research Collaboratory for Structural Bioinformatics- Protein Data Bank (RCSB-PDB). The structure of β-asarone was drawn in Chem Draw Ultra 7.0.1. Finally, the toxicity of β-asarone has been predicted by using online web-servers like Lazar and Protox. The ADME data of current investigation has shown good oral bioavailability of β-asarone. It also showed a good binding affinity towards dopaminergic receptors. Further, it was found to be interacting through hydrogen bond with different amino acid residues of D2 and D3 receptors. However, β-asarone was predicted to be toxic in various species of rodents, as per the results of toxicity online web servers. Based on the current finding from ADME and docking studies, these preliminary results may act as effective precursor tool for development of β-asarone as a promising anti-Parkinson agent. However, furthermore experimental validation using in-vitro & in-vivo studies is needed to explore their therapeutic & toxic effects. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

Space-Time Earthquake Rate Models for One-Year Hazard Forecasts in Oklahoma

NASA Astrophysics Data System (ADS)

Llenos, A. L.; Michael, A. J.

2017-12-01

The recent one-year seismic hazard assessments for natural and induced seismicity in the central and eastern US (CEUS) (Petersen et al., 2016, 2017) rely on earthquake rate models based on declustered catalogs (i.e., catalogs with foreshocks and aftershocks removed), as is common practice in probabilistic seismic hazard analysis. However, standard declustering can remove over 90% of some induced sequences in the CEUS. Some of these earthquakes may still be capable of causing damage or concern (Petersen et al., 2015, 2016). The choices of whether and how to decluster can lead to seismicity rate estimates that vary by up to factors of 10-20 (Llenos and Michael, AGU, 2016). Therefore, in order to improve the accuracy of hazard assessments, we are exploring ways to make forecasts based on full, rather than declustered, catalogs. We focus on Oklahoma, where earthquake rates began increasing in late 2009 mainly in central Oklahoma and ramped up substantially in 2013 with the expansion of seismicity into northern Oklahoma and southern Kansas. We develop earthquake rate models using the space-time Epidemic-Type Aftershock Sequence (ETAS) model (Ogata, JASA, 1988; Ogata, AISM, 1998; Zhuang et al., JASA, 2002), which characterizes both the background seismicity rate as well as aftershock triggering. We examine changes in the model parameters over time, focusing particularly on background rate, which reflects earthquakes that are triggered by external driving forces such as fluid injection rather than other earthquakes. After the model parameters are fit to the seismicity data from a given year, forecasts of the full catalog for the following year can then be made using a suite of 100,000 ETAS model simulations based on those parameters. To evaluate this approach, we develop pseudo-prospective yearly forecasts for Oklahoma from 2013-2016 and compare them with the observations using standard Collaboratory for the Study of Earthquake Predictability tests for consistency.

Earthquake Preparedness and Education: A Collective Impact Approach to Improving Awareness and Resiliency

NASA Astrophysics Data System (ADS)

Benthien, M. L.; Wood, M. M.; Ballmann, J. E.; DeGroot, R. M.

2017-12-01

The Southern California Earthquake Center (SCEC), headquartered at the University of Southern California, is a collaboration of more than 1000 scientists and students from 70+ institutions. SCEC's Communication, Education, and Outreach (CEO) program translates earthquake science into products and activities in order to increase scientific literacy, develop a diverse scientific workforce, and reduce earthquake risk to life and property. SCEC CEO staff coordinate these efforts through partnership collaborations it has established to engage subject matter experts, reduce duplication of effort, and achieve greater results. Several of SCEC's collaborative networks began within Southern California and have since grown statewide (Earthquake Country Alliance, a public-private-grassroots partnership), national ("EPIcenter" Network of museums, parks, libraries, etc.), and international (Great ShakeOut Earthquake Drills with millions of participants each year). These networks have benefitted greatly from partnerships with national (FEMA), state, and local emergency managers. Other activities leverage SCEC's networks in new ways and with national earth science organizations, such as the EarthConnections Program (with IRIS, NAGT, and many others), Quake Catcher Network (with IRIS) and the GeoHazards Messaging Collaboratory (with IRIS, UNAVCO, and USGS). Each of these partnerships share a commitment to service, collaborative development, and the application of research (including social science theory for motivating preparedness behaviors). SCEC CEO is developing new evaluative structures and adapting the Collective Impact framework to better understand what has worked well or what can be improved, according to the framework's five key elements: create a common agenda; share common indicators and measurement; engage diverse stakeholders to coordinate mutually reinforcing activities; initiate continuous communication; and provide "backbone" support. This presentation will provide an overview of SCEC's partnership activities and how we are adapting them within the Collective Impact framework. The goal is to present our collaborations as case studies for similar efforts seeking to improve the translation of applied research into policy in order to reduce the impact of natural hazards.

A smoothed stochastic earthquake rate model considering seismicity and fault moment release for Europe

NASA Astrophysics Data System (ADS)

Hiemer, S.; Woessner, J.; Basili, R.; Danciu, L.; Giardini, D.; Wiemer, S.

2014-08-01

We present a time-independent gridded earthquake rate forecast for the European region including Turkey. The spatial component of our model is based on kernel density estimation techniques, which we applied to both past earthquake locations and fault moment release on mapped crustal faults and subduction zone interfaces with assigned slip rates. Our forecast relies on the assumption that the locations of past seismicity is a good guide to future seismicity, and that future large-magnitude events occur more likely in the vicinity of known faults. We show that the optimal weighted sum of the corresponding two spatial densities depends on the magnitude range considered. The kernel bandwidths and density weighting function are optimized using retrospective likelihood-based forecast experiments. We computed earthquake activity rates (a- and b-value) of the truncated Gutenberg-Richter distribution separately for crustal and subduction seismicity based on a maximum likelihood approach that considers the spatial and temporal completeness history of the catalogue. The final annual rate of our forecast is purely driven by the maximum likelihood fit of activity rates to the catalogue data, whereas its spatial component incorporates contributions from both earthquake and fault moment-rate densities. Our model constitutes one branch of the earthquake source model logic tree of the 2013 European seismic hazard model released by the EU-FP7 project `Seismic HAzard haRmonization in Europe' (SHARE) and contributes to the assessment of epistemic uncertainties in earthquake activity rates. We performed retrospective and pseudo-prospective likelihood consistency tests to underline the reliability of our model and SHARE's area source model (ASM) using the testing algorithms applied in the collaboratory for the study of earthquake predictability (CSEP). We comparatively tested our model's forecasting skill against the ASM and find a statistically significant better performance for testing periods of 10-20 yr. The testing results suggest that our model is a viable candidate model to serve for long-term forecasting on timescales of years to decades for the European region.

Using Docker Containers to Extend Reproducibility Architecture for the NASA Earth Exchange (NEX)

NASA Technical Reports Server (NTRS)

Votava, Petr; Michaelis, Andrew; Spaulding, Ryan; Becker, Jeffrey C.

2016-01-01

NASA Earth Exchange (NEX) is a data, supercomputing and knowledge collaboratory that houses NASA satellite, climate and ancillary data where a focused community can come together to address large-scale challenges in Earth sciences. As NEX has been growing into a petabyte-size platform for analysis, experiments and data production, it has been increasingly important to enable users to easily retrace their steps, identify what datasets were produced by which process chains, and give them ability to readily reproduce their results. This can be a tedious and difficult task even for a small project, but is almost impossible on large processing pipelines. We have developed an initial reproducibility and knowledge capture solution for the NEX, however, if users want to move the code to another system, whether it is their home institution cluster, laptop or the cloud, they have to find, build and install all the required dependencies that would run their code. This can be a very tedious and tricky process and is a big impediment to moving code to data and reproducibility outside the original system. The NEX team has tried to assist users who wanted to move their code into OpenNEX on Amazon cloud by creating custom virtual machines with all the software and dependencies installed, but this, while solving some of the issues, creates a new bottleneck that requires the NEX team to be involved with any new request, updates to virtual machines and general maintenance support. In this presentation, we will describe a solution that integrates NEX and Docker to bridge the gap in code-to-data migration. The core of the solution is saemi-automatic conversion of science codes, tools and services that are already tracked and described in the NEX provenance system, to Docker - an open-source Linux container software. Docker is available on most computer platforms, easy to install and capable of seamlessly creating and/or executing any application packaged in the appropriate format. We believe this is an important step towards seamless process deployment in heterogeneous environments that will enhance community access to NASA data and tools in a scalable way, promote software reuse, and improve reproducibility of scientific results.

Crystal structures of sampatrilat and sampatrilat-Asp in complex with human ACE - a molecular basis for domain selectivity.

PubMed

Cozier, Gyles E; Schwager, Sylva L; Sharma, Rajni K; Chibale, Kelly; Sturrock, Edward D; Acharya, K Ravi

2018-04-01

Angiotensin-1-converting enzyme (ACE) is a zinc metallopeptidase that consists of two homologous catalytic domains (known as nACE and cACE) with different substrate specificities. Based on kinetic studies it was previously reported that sampatrilat, a tight-binding inhibitor of ACE, K i = 13.8 nm and 171.9 nm for cACE and nACE respectively [Sharma et al., Journal of Chemical Information and Modeling (2016), 56, 2486-2494], was 12.4-fold more selective for cACE. In addition, samAsp, in which an aspartate group replaces the sampatrilat lysine, was found to be a nonspecific and lower micromolar affinity inhibitor. Here, we report a detailed three-dimensional structural analysis of sampatrilat and samAsp binding to ACE using high-resolution crystal structures elucidated by X-ray crystallography, which provides a molecular basis for differences in inhibitor affinity and selectivity for nACE and cACE. The structures show that the specificity of sampatrilat can be explained by increased hydrophobic interactions and a H-bond from Glu403 of cACE with the lysine side chain of sampatrilat that are not observed in nACE. In addition, the structures clearly show a significantly greater number of hydrophilic and hydrophobic interactions with sampatrilat compared to samAsp in both cACE and nACE consistent with the difference in affinities. Our findings provide new experimental insights into ligand binding at the active site pockets that are important for the design of highly specific domain selective inhibitors of ACE. The atomic coordinates and structure factors for N- and C-domains of ACE bound to sampatrilat and sampatrilat-Asp complexes (6F9V, 6F9R, 6F9T and 6F9U respectively) have been deposited in the Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Rutgers University, New Brunswick, NJ (http://www.rcsb.org/). © 2018 The Authors. The FEBS Journal published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies.

Using Docker Containers to Extend Reproducibility Architecture for the NASA Earth Exchange (NEX)

NASA Astrophysics Data System (ADS)

Votava, P.; Michaelis, A.; Spaulding, R.; Becker, J. C.

2016-12-01

NASA Earth Exchange (NEX) is a data, supercomputing and knowledge collaboratory that houses NASA satellite, climate and ancillary data where a focused community can come together to address large-scale challenges in Earth sciences. As NEX has been growing into a petabyte-size platform for analysis, experiments and data production, it has been increasingly important to enable users to easily retrace their steps, identify what datasets were produced by which process chains, and give them ability to readily reproduce their results. This can be a tedious and difficult task even for a small project, but is almost impossible on large processing pipelines. We have developed an initial reproducibility and knowledge capture solution for the NEX, however, if users want to move the code to another system, whether it is their home institution cluster, laptop or the cloud, they have to find, build and install all the required dependencies that would run their code. This can be a very tedious and tricky process and is a big impediment to moving code to data and reproducibility outside the original system. The NEX team has tried to assist users who wanted to move their code into OpenNEX on Amazon cloud by creating custom virtual machines with all the software and dependencies installed, but this, while solving some of the issues, creates a new bottleneck that requires the NEX team to be involved with any new request, updates to virtual machines and general maintenance support. In this presentation, we will describe a solution that integrates NEX and Docker to bridge the gap in code-to-data migration. The core of the solution is saemi-automatic conversion of science codes, tools and services that are already tracked and described in the NEX provenance system, to Docker - an open-source Linux container software. Docker is available on most computer platforms, easy to install and capable of seamlessly creating and/or executing any application packaged in the appropriate format. We believe this is an important step towards seamless process deployment in heterogeneous environments that will enhance community access to NASA data and tools in a scalable way, promote software reuse, and improve reproducibility of scientific results.

Structural basis of peptide recognition by the angiotensin-1 converting enzyme homologue AnCE from Drosophila melanogaster

PubMed Central

Akif, Mohd; Masuyer, Geoffrey; Bingham, Richard J; Sturrock, Edward D; Isaac, R Elwyn; Acharya, K Ravi

2012-01-01

Human somatic angiotensin-1 converting enzyme (ACE) is a zinc-dependent exopeptidase, that catalyses the conversion of the decapeptide angiotensin I to the octapeptide angiotensin II, by removing a C-terminal dipeptide. It is the principal component of the renin-angiotensin–aldosterone system that regulates blood pressure. Hence it is an important therapeutic target for the treatment of hypertension and cardiovascular disorders. Here, we report the structures of an ACE homologue from Drosophila melanogaster (AnCE; a proven structural model for the more complex human ACE) co-crystallized with mammalian peptide substrates (bradykinin, Thr6–bradykinin, angiotensin I and a snake venom peptide inhibitor, bradykinin-potentiating peptide-b). The structures determined at 2-Å resolution illustrate that both angiotensin II (the cleaved product of angiotensin I by AnCE) and bradykinin-potentiating peptide-b bind in an analogous fashion at the active site of AnCE, but also exhibit significant differences. In addition, the binding of Arg–Pro–Pro, the cleavage product of bradykinin and Thr6– bradykinin, provides additional detail of the general peptide binding in AnCE. Thus the new structures of AnCE complexes presented here improves our understanding of the binding of peptides and the mechanism by which peptides inhibit this family of enzymes. Database The atomic coordinates and structure factors for AnCE–Ang II (code 4AA1), AnCE–BPPb (code 4AA2), AnCE–BK (code 4ASQ) and AnCE–Thr6–BK (code 4ASR) complexes have been deposited in the Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Rutgers University, New Brunswick, NJ (http://www.rcsb.org/) Structured digital abstract AnCE cleaves Ang I by enzymatic study (View interaction) Bradykinin and AnCE bind by x-ray crystallography (View interaction) BPP and AnCE bind by x-ray crystallography (View interaction) AnCE cleaves Bradykinin by enzymatic study (View interaction) Ang II and AnCE bind by x-ray crystallography (View interaction) PMID:23082758

Long-Term RST Analysis of Anomalous TIR Sequences in Relation with Earthquakes Occurred in Greece in the Period 2004-2013

NASA Astrophysics Data System (ADS)

Eleftheriou, Alexander; Filizzola, Carolina; Genzano, Nicola; Lacava, Teodosio; Lisi, Mariano; Paciello, Rossana; Pergola, Nicola; Vallianatos, Filippos; Tramutoli, Valerio

2016-01-01

Real-time integration of multi-parametric observations is expected to accelerate the process toward improved, and operationally more effective, systems for time-Dependent Assessment of Seismic Hazard (t-DASH) and earthquake short-term (from days to weeks) forecast. However, a very preliminary step in this direction is the identification of those parameters (chemical, physical, biological, etc.) whose anomalous variations can be, to some extent, associated with the complex process of preparation for major earthquakes. In this paper one of these parameters (the Earth's emitted radiation in the Thermal InfraRed spectral region) is considered for its possible correlation with M ≥ 4 earthquakes occurred in Greece in between 2004 and 2013. The Robust Satellite Technique (RST) data analysis approach and Robust Estimator of TIR Anomalies (RETIRA) index were used to preliminarily define, and then to identify, significant sequences of TIR anomalies (SSTAs) in 10 years (2004-2013) of daily TIR images acquired by the Spinning Enhanced Visible and Infrared Imager on board the Meteosat Second Generation satellite. Taking into account the physical models proposed for justifying the existence of a correlation among TIR anomalies and earthquake occurrences, specific validation rules (in line with the ones used by the Collaboratory for the Study of Earthquake Predictability—CSEP—Project) have been defined to drive a retrospective correlation analysis process. The analysis shows that more than 93 % of all identified SSTAs occur in the prefixed space-time window around ( M ≥ 4) earthquake's time and location of occurrence with a false positive rate smaller than 7 %. Molchan error diagram analysis shows that such a correlation is far to be achievable by chance notwithstanding the huge amount of missed events due to frequent space/time data gaps produced by the presence of clouds over the scene. Achieved results, and particularly the very low rate of false positives registered on a so long testing period, seems already sufficient (at least) to qualify TIR anomalies (identified by RST approach and RETIRA index) among the parameters to be considered in the framework of a multi-parametric approach to t-DASH.

Using Analytics to Support Petabyte-Scale Science on the NASA Earth Exchange (NEX)

NASA Astrophysics Data System (ADS)

Votava, P.; Michaelis, A.; Ganguly, S.; Nemani, R. R.

2014-12-01

NASA Earth Exchange (NEX) is a data, supercomputing and knowledge collaboratory that houses NASA satellite, climate and ancillary data where a focused community can come together to address large-scale challenges in Earth sciences. Analytics within NEX occurs at several levels - data, workflows, science and knowledge. At the data level, we are focusing on collecting and analyzing any information that is relevant to efficient acquisition, processing and management of data at the smallest granularity, such as files or collections. This includes processing and analyzing all local and many external metadata that are relevant to data quality, size, provenance, usage and other attributes. This then helps us better understand usage patterns and improve efficiency of data handling within NEX. When large-scale workflows are executed on NEX, we capture information that is relevant to processing and that can be analyzed in order to improve efficiencies in job scheduling, resource optimization, or data partitioning that would improve processing throughput. At this point we also collect data provenance as well as basic statistics of intermediate and final products created during the workflow execution. These statistics and metrics form basic process and data QA that, when combined with analytics algorithms, helps us identify issues early in the production process. We have already seen impact in some petabyte-scale projects, such as global Landsat processing, where we were able to reduce processing times from days to hours and enhance process monitoring and QA. While the focus so far has been mostly on support of NEX operations, we are also building a web-based infrastructure that enables users to perform direct analytics on science data - such as climate predictions or satellite data. Finally, as one of the main goals of NEX is knowledge acquisition and sharing, we began gathering and organizing information that associates users and projects with data, publications, locations and other attributes that can then be analyzed as a part of the NEX knowledge graph and used to greatly improve advanced search capabilities. Overall, we see data analytics at all levels as an important part of NEX as we are continuously seeking improvements in data management, workflow processing, use of resources, usability and science acceleration.

Creation a Geo Big Data Outreach and Training Collaboratory for Wildfire Community

NASA Astrophysics Data System (ADS)

Altintas, I.; Sale, J.; Block, J.; Cowart, C.; Crawl, D.

2015-12-01

A major challenge for the geoscience community is the training and education of current and next generation big data geoscientists. In wildfire research, there are an increasing number of tools, middleware and techniques to use for data science related to wildfires. The necessary computing infrastructures are often within reach and most of the software tools for big data are freely available. But what has been lacking is a transparent platform and training program to produce data science experts who can use these integrated tools effectively. Scientists well versed to take advantage of big data technologies in geoscience applications is of critical importance to the future of research and knowledge advancement. To address this critical need, we are developing learning modules to teach process-based thinking to capture the value of end-to-end systems of reusable blocks of knowledge and integrate the tools and technologies used in big data analysis in an intuitive manner. WIFIRE is an end-to-end cyberinfrastructure for dynamic data-driven simulation, prediction and visualization of wildfire behavior.To this end, we are openly extending an environment we have built for "big data training" (biobigdata.ucsd.edu) to similar MOOC-based approaches to the wildfire community. We are building an environment that includes training modules for distributed platforms and systems, Big Data concepts, and scalable workflow tools, along with other basics of data science including data management, reproducibility and sharing of results. We also plan to provide teaching modules with analytical and dynamic data-driven wildfire behavior modeling case studies which address the needs not only of standards-based K-12 science education but also the needs of a well-educated and informed citizenry.Another part our outreach mission is to educate our community on all aspects of wildfire research. One of the most successful ways of accomplishing this is through high school and undergraduate student internships. Students have worked closely with WIFIRE researchers on various projects including the development of statistical models of wildfire ignition probabilities for southern California, and the development of a smartphone app for crowd-sourced wildfire reporting through social networks such as Twitter and Facebook.

Three Dimensional Morphodynamic and Vegetation Modeling of Wax Lake Delta

NASA Astrophysics Data System (ADS)

Khadka, A. K.; Meselhe, E. A.; Sadid, K. M.

2013-12-01

The Wax Lake Delta (WLD) is located at the downstream end of the Wax Lake outlet, approximately 13 miles upstream from Morgan City, Louisiana. In 1942 the United States Army Corps of Engineer (USACE) dredged Wax Lake Outlet channel from lower Atchafalaya River to reduce flood stages at Morgan City. The channel diverts 50% of Atchafalaya River water and sediment to WLD. Since 1942, the WLD has been building seaward due to the deposition of sediment at the channel mouth. Growth of this delta supports the concept of land building via river diversions. A process based morphodynamic model (Delft3D) with the ability to predict evolution of river-dominated deltas is used in this study to further our understanding of land-building and delta growth processes. Initial model bathymetry is prepared based on USACE hydrographic survey of 1998 along with LIDAR survey data for over bank areas. Two continuous gauges at Wax Lake outlet near Calumet and Atchafalaya Bay near Eugene Island are used to assign upstream inflow and outflow boundary conditions, respectively. The model is calibrated and validated for Hydrodynamics and Sediment transport through two sets of field observations for flooded and average conditions. Vertical velocity and suspended sediment profiles made in the channels of the WLD in 2000 and 2001 are used for the model calibration and validation. More comprehensive field observations are being gathered as part of an ongoing study funded by the National Science Foundation (FESD-Delta Dynamics Collaboratory). Data include mutli-beam bathymetric data, velocities, sediment, and nutrient concentrations in the channels as well as on top of the islands. The Delft3D morphodynamic model for WLD provides quantitative information regarding water and sediment distribution among the inter-connected channel bifurcations, the exchange of sediment and nutrients between the channels and islands. The model is being used to investigate the rate of land building and delta growth from the early 1970s to present. The model provides great insights on fluvial-marine sediment dispersal and retention within the delta which will enhance the planning and design of future land building projects of comparable design.

Kinetic and structural characterization of amyloid-β peptide hydrolysis by human angiotensin-1-converting enzyme.

PubMed

Larmuth, Kate M; Masuyer, Geoffrey; Douglas, Ross G; Schwager, Sylva L; Acharya, K Ravi; Sturrock, Edward D

2016-03-01

Angiotensin-1-converting enzyme (ACE), a zinc metallopeptidase, consists of two homologous catalytic domains (N and C) with different substrate specificities. Here we report kinetic parameters of five different forms of human ACE with various amyloid beta (Aβ) substrates together with high resolution crystal structures of the N-domain in complex with Aβ fragments. For the physiological Aβ(1-16) peptide, a novel ACE cleavage site was found at His14-Gln15. Furthermore, Aβ(1-16) was preferentially cleaved by the individual N-domain; however, the presence of an inactive C-domain in full-length somatic ACE (sACE) greatly reduced enzyme activity and affected apparent selectivity. Two fluorogenic substrates, Aβ(4-10)Q and Aβ(4-10)Y, underwent endoproteolytic cleavage at the Asp7-Ser8 bond with all ACE constructs showing greater catalytic efficiency for Aβ(4-10)Y. Surprisingly, in contrast to Aβ(1-16) and Aβ(4-10)Q, sACE showed positive domain cooperativity and the double C-domain (CC-sACE) construct no cooperativity towards Aβ(4-10)Y. The structures of the Aβ peptide-ACE complexes revealed a common mode of peptide binding for both domains which principally targets the C-terminal P2' position to the S2' pocket and recognizes the main chain of the P1' peptide. It is likely that N-domain selectivity for the amyloid peptide is conferred through the N-domain specific S2' residue Thr358. Additionally, the N-domain can accommodate larger substrates through movement of the N-terminal helices, as suggested by the disorder of the hinge region in the crystal structures. Our findings are important for the design of domain selective inhibitors as the differences in domain selectivity are more pronounced with the truncated domains compared to the more physiological full-length forms. The atomic coordinates and structure factors for N-domain ACE with Aβ peptides 4-10 (5AM8), 10-16 (5AM9), 1-16 (5AMA), 35-42 (5AMB) and (4-10)Y (5AMC) complexes have been deposited in the Protein Data Bank, Research Collaboratory for Structural Bioinformatics, Rutgers University, New Brunswick, NJ, USA (http://www.rcsb.org/). © 2016 The Authors. The FEBS Journal published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies.

Sharing Annotated Audio Recordings of Clinic Visits With Patients—Development of the Open Recording Automated Logging System (ORALS): Study Protocol

PubMed Central

Dannenberg, Michelle D; Ganoe, Craig H; Haslett, William; Faill, Rebecca; Hassanpour, Saeed; Das, Amar; Arend, Roger; Masel, Meredith C; Piper, Sheryl; Reicher, Haley; Ryan, James; Elwyn, Glyn

2017-01-01

Background Providing patients with recordings of their clinic visits enhances patient and family engagement, yet few organizations routinely offer recordings. Challenges exist for organizations and patients, including data safety and navigating lengthy recordings. A secure system that allows patients to easily navigate recordings may be a solution. Objective The aim of this project is to develop and test an interoperable system to facilitate routine recording, the Open Recording Automated Logging System (ORALS), with the aim of increasing patient and family engagement. ORALS will consist of (1) technically proficient software using automated machine learning technology to enable accurate and automatic tagging of in-clinic audio recordings (tagging involves identifying elements of the clinic visit most important to patients [eg, treatment plan] on the recording) and (2) a secure, easy-to-use Web interface enabling the upload and accurate linkage of recordings to patients, which can be accessed at home. Methods We will use a mixed methods approach to develop and formatively test ORALS in 4 iterative stages: case study of pioneer clinics where recordings are currently offered to patients, ORALS design and user experience testing, ORALS software and user interface development, and rapid cycle testing of ORALS in a primary care clinic, assessing impact on patient and family engagement. Dartmouth’s Informatics Collaboratory for Design, Development and Dissemination team, patients, patient partners, caregivers, and clinicians will assist in developing ORALS. Results We will implement a publication plan that includes a final project report and articles for peer-reviewed journals. In addition to this work, we will regularly report on our progress using popular relevant Tweet chats and online using our website, www.openrecordings.org. We will disseminate our work at relevant conferences (eg, Academy Health, Health Datapalooza, and the Institute for Healthcare Improvement Quality Forums). Finally, Iora Health, a US-wide network of primary care practices (www.iorahealth.com), has indicated a willingness to implement ORALS on a larger scale upon completion of this development project. Conclusions Upon the completion of this project we will have developed a novel recording system that will be ready for large-scale testing. Our long-term goal is for ORALS to seamlessly fit into a clinic’s and patient’s daily routine, increasing levels of patient engagement and transparency of care. PMID:28684387

Exploring TechQuests Through Open Source and Tools That Inspire Digital Natives

NASA Astrophysics Data System (ADS)

Hayden, K.; Ouyang, Y.; Kilb, D.; Taylor, N.; Krey, B.

2008-12-01

"There is little doubt that K-12 students need to understand and appreciate the Earth on which they live. They can achieve this understanding only if their teachers are well prepared". Dan Barstow, Director of Center for Earth and Space Science Education at TERC. The approach of San Diego County's Cyberinfrastructure Training, Education, Advancement, and Mentoring (SD Cyber-TEAM) project is to build understandings of Earth systems for middle school teachers and students through a collaborative that has engaged the scientific community in the use of cyber-based tools and environments for learning. The SD Cyber-TEAM has used Moodle, an open source management system with social networking tools, that engage digital native students and their teachers in collaboration and sharing of ideas and research related to Earth science. Teachers participate in on-line professional dialog through chat, wikis, blogs, forums, journals and other tools and choose the tools that will best fit their classroom. The use of Moodle during the Summer Cyber Academy developed a cyber-collaboratory environment where teaching strategies were discussed, supported and actualized by participants. These experiences supported digital immigrants (teachers) in adapting teaching strategies using technologies that are most attractive and familiar to students (digital natives). A new study by the National School Boards Association and Grunwald Associates LLC indicated that "the online behaviors of U.S. teens and 'tweens shows that 96 percent of students with online access use social networking technologies, such as chatting, text messaging, blogging, and visiting online communities such as Facebook, MySpace, and Webkinz". While SD Cyber-TEAM teachers are implementing TechQuests in classrooms they use these social networking elements to capture student interest and address the needs of digital natives. Through the Moodle environment, teachers have explored a variety of learning objects called TechQuests, to support classroom instruction previously outlined through a textbook. Project classrooms have participated in videoconferences over high-speed networks and through satellite connections with experts in the field investigating scientific data found in the CA State Park of Anza Borrego. Other engaging tools include: An Interactive Epicenter Locator Tool developed through the project in collaboration with the Scripps Institution of Oceanography to engage students in the use of data to determine earthquake epicenters during hands on investigations, and a TechQuest activity where GoogleEarth allows students to explore geographic locations and scientific data.

Earthquake number forecasts testing

NASA Astrophysics Data System (ADS)

Kagan, Yan Y.

2017-10-01

We study the distributions of earthquake numbers in two global earthquake catalogues: Global Centroid-Moment Tensor and Preliminary Determinations of Epicenters. The properties of these distributions are especially required to develop the number test for our forecasts of future seismic activity rate, tested by the Collaboratory for Study of Earthquake Predictability (CSEP). A common assumption, as used in the CSEP tests, is that the numbers are described by the Poisson distribution. It is clear, however, that the Poisson assumption for the earthquake number distribution is incorrect, especially for the catalogues with a lower magnitude threshold. In contrast to the one-parameter Poisson distribution so widely used to describe earthquake occurrences, the negative-binomial distribution (NBD) has two parameters. The second parameter can be used to characterize the clustering or overdispersion of a process. We also introduce and study a more complex three-parameter beta negative-binomial distribution. We investigate the dependence of parameters for both Poisson and NBD distributions on the catalogue magnitude threshold and on temporal subdivision of catalogue duration. First, we study whether the Poisson law can be statistically rejected for various catalogue subdivisions. We find that for most cases of interest, the Poisson distribution can be shown to be rejected statistically at a high significance level in favour of the NBD. Thereafter, we investigate whether these distributions fit the observed distributions of seismicity. For this purpose, we study upper statistical moments of earthquake numbers (skewness and kurtosis) and compare them to the theoretical values for both distributions. Empirical values for the skewness and the kurtosis increase for the smaller magnitude threshold and increase with even greater intensity for small temporal subdivision of catalogues. The Poisson distribution for large rate values approaches the Gaussian law, therefore its skewness and kurtosis both tend to zero for large earthquake rates: for the Gaussian law, these values are identically zero. A calculation of the NBD skewness and kurtosis levels based on the values of the first two statistical moments of the distribution, shows rapid increase of these upper moments levels. However, the observed catalogue values of skewness and kurtosis are rising even faster. This means that for small time intervals, the earthquake number distribution is even more heavy-tailed than the NBD predicts. Therefore for small time intervals, we propose using empirical number distributions appropriately smoothed for testing forecasted earthquake numbers.

A prospective earthquake forecast experiment for Japan

NASA Astrophysics Data System (ADS)

Yokoi, Sayoko; Nanjo, Kazuyoshi; Tsuruoka, Hiroshi; Hirata, Naoshi

2013-04-01

One major focus of the current Japanese earthquake prediction research program (2009-2013) is to move toward creating testable earthquake forecast models. For this purpose we started an experiment of forecasting earthquake activity in Japan under the framework of the Collaboratory for the Study of Earthquake Predictability (CSEP) through an international collaboration. We established the CSEP Testing Centre, an infrastructure to encourage researchers to develop testable models for Japan, and to conduct verifiable prospective tests of their model performance. On 1 November in 2009, we started the 1st earthquake forecast testing experiment for the Japan area. We use the unified JMA catalogue compiled by the Japan Meteorological Agency as authorized catalogue. The experiment consists of 12 categories, with 4 testing classes with different time spans (1 day, 3 months, 1 year, and 3 years) and 3 testing regions called All Japan, Mainland, and Kanto. A total of 91 models were submitted to CSEP-Japan, and are evaluated with the CSEP official suite of tests about forecast performance. In this presentation, we show the results of the experiment of the 3-month testing class for 5 rounds. HIST-ETAS7pa, MARFS and RI10K models corresponding to the All Japan, Mainland and Kanto regions showed the best score based on the total log-likelihood. It is also clarified that time dependency of model parameters is no effective factor to pass the CSEP consistency tests for the 3-month testing class in all regions. Especially, spatial distribution in the All Japan region was too difficult to pass consistency test due to multiple events at a bin. Number of target events for a round in the Mainland region tended to be smaller than model's expectation during all rounds, which resulted in rejections of consistency test because of overestimation. In the Kanto region, pass ratios of consistency tests in each model showed more than 80%, which was associated with good balanced forecasting of event number and spatial distribution. Due to the multiple rounds of the experiment, we are now understanding the stability of models, robustness of model selection and earthquake predictability in each region beyond stochastic fluctuations of seismicity. We plan to use the results for design of 3 dimensional earthquake forecasting model in Kanto region, which is supported by the special project for reducing vulnerability for urban mega earthquake disasters from Ministy of Education, Culture, Sports and Technology of Japan.

Structure of the Archaeoglobus fulgidus orphan ORF AF1382 determined by sulfur SAD from a moderately diffracting crystal

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhu, Jin-Yi; Fu, Zheng-Qing; Argonne National Laboratory, Argonne, Illinois

2012-09-01

The crystal structure of the 11.14 kDa orphan ORF 1382 from Archaeoglobus fulgidus (AF1382) has been determined by sulfur SAD phasing using data collected from a moderately diffracting crystal and 1.9 Å synchrotron X-rays. The crystal structure of the 11.14 kDa orphan ORF 1382 from Archaeoglobus fulgidus (AF1382) has been determined by sulfur SAD phasing using a moderately diffracting crystal and 1.9 Å wavelength synchrotron X-rays. AF1382 was selected as a structural genomics target by the Southeast Collaboratory for Structural Genomics (SECSG) since sequence analyses showed that it did not belong to the Pfam-A database and thus could represent amore » novel fold. The structure was determined by exploiting longer wavelength X-rays and data redundancy to increase the anomalous signal in the data. AF1382 is a 95-residue protein containing five S atoms associated with four methionine residues and a single cysteine residue that yields a calculated Bijvoet ratio (ΔF{sub anom}/F) of 1.39% for 1.9 Å wavelength X-rays. Coupled with an average Bijvoet redundancy of 25 (two 360° data sets), this produced an excellent electron-density map that allowed 69 of the 95 residues to be automatically fitted. The S-SAD model was then manually completed and refined (R = 23.2%, R{sub free} = 26.8%) to 2.3 Å resolution. High-resolution data were subsequently collected from a better diffracting crystal using 0.97 Å wavelength synchrotron X-rays and the S-SAD model was refined (R = 17.9%, R{sub free} = 21.4%) to 1.85 Å resolution. AF1382 has a winged-helix–turn–helix structure common to many DNA-binding proteins and most closely resembles the N-terminal domain (residues 1–82) of the Rio2 kinase from A. fulgidus, which has been shown to bind DNA, and a number of MarR-family transcriptional regulators, suggesting a similar DNA-binding function for AF1382. The analysis also points out the advantage gained from carrying out data reduction and structure determination on-site while the crystal is still available for further data collection.« less

Reproducibility and Knowledge Capture Architecture for the NASA Earth Exchange (NEX)

NASA Astrophysics Data System (ADS)

Votava, P.; Michaelis, A.; Nemani, R. R.

2015-12-01

NASA Earth Exchange (NEX) is a data, supercomputing and knowledge collaboratory that houses NASA satellite, climate and ancillary data where a focused community can come together to address large-scale challenges in Earth sciences. As NEX has been growing into a platform for analysis, experiments and production of data on the order of petabytes in volume, it has been increasingly important to enable users to easily retrace their steps, identify what datasets were produced by which process or chain of processes, and give them ability to readily reproduce their results. This can be a tedious and difficult task even for a small project, but is almost impossible on large processing pipelines. For example, the NEX Landsat pipeline is deployed to process hundreds of thousands of Landsat scenes in a non-linear production workflow with many-to-many mappings of files between 40 separate processing stages where over 100 million processes get executed. At this scale it is almost impossible to easily examine the entire provenance of each file, let alone easily reproduce it. We have developed an initial solution for the NEX system - a transparent knowledge capture and reproducibility architecture that does not require any special code instrumentation and other actions on user's part. Users can automatically capture their work through a transparent provenance tracking system and the information can subsequently be queried and/or converted into workflows. The provenance information is streamed to a MongoDB document store and a subset is converted to an RDF format and inserted into our triple-store. The triple-store already contains semantic information about other aspects of the NEX system and adding provenance enhances the ability to relate workflows and data to users, locations, projects and other NEX concepts that can be queried in a standard way. The provenance system has the ability to track data throughout NEX and across number of executions and can recreate and re-execute the entire history and reproduce the results. The information can also be used to automatically create individual workflow components and full workflows that can be visually examined, modified, executed and extended by researchers. This provides a key component for accelerating research through knowledge capture and scientific reproducibility on NEX.

Sharing Annotated Audio Recordings of Clinic Visits With Patients-Development of the Open Recording Automated Logging System (ORALS): Study Protocol.

PubMed

Barr, Paul J; Dannenberg, Michelle D; Ganoe, Craig H; Haslett, William; Faill, Rebecca; Hassanpour, Saeed; Das, Amar; Arend, Roger; Masel, Meredith C; Piper, Sheryl; Reicher, Haley; Ryan, James; Elwyn, Glyn

2017-07-06

Providing patients with recordings of their clinic visits enhances patient and family engagement, yet few organizations routinely offer recordings. Challenges exist for organizations and patients, including data safety and navigating lengthy recordings. A secure system that allows patients to easily navigate recordings may be a solution. The aim of this project is to develop and test an interoperable system to facilitate routine recording, the Open Recording Automated Logging System (ORALS), with the aim of increasing patient and family engagement. ORALS will consist of (1) technically proficient software using automated machine learning technology to enable accurate and automatic tagging of in-clinic audio recordings (tagging involves identifying elements of the clinic visit most important to patients [eg, treatment plan] on the recording) and (2) a secure, easy-to-use Web interface enabling the upload and accurate linkage of recordings to patients, which can be accessed at home. We will use a mixed methods approach to develop and formatively test ORALS in 4 iterative stages: case study of pioneer clinics where recordings are currently offered to patients, ORALS design and user experience testing, ORALS software and user interface development, and rapid cycle testing of ORALS in a primary care clinic, assessing impact on patient and family engagement. Dartmouth's Informatics Collaboratory for Design, Development and Dissemination team, patients, patient partners, caregivers, and clinicians will assist in developing ORALS. We will implement a publication plan that includes a final project report and articles for peer-reviewed journals. In addition to this work, we will regularly report on our progress using popular relevant Tweet chats and online using our website, www.openrecordings.org. We will disseminate our work at relevant conferences (eg, Academy Health, Health Datapalooza, and the Institute for Healthcare Improvement Quality Forums). Finally, Iora Health, a US-wide network of primary care practices (www.iorahealth.com), has indicated a willingness to implement ORALS on a larger scale upon completion of this development project. Upon the completion of this project we will have developed a novel recording system that will be ready for large-scale testing. Our long-term goal is for ORALS to seamlessly fit into a clinic's and patient's daily routine, increasing levels of patient engagement and transparency of care. ©Paul J Barr, Michelle D Dannenberg, Craig H Ganoe, William Haslett, Rebecca Faill, Saeed Hassanpour, Amar Das, Roger Arend, Meredith C Masel, Sheryl Piper, Haley Reicher, James Ryan, Glyn Elwyn. Originally published in JMIR Research Protocols (http://www.researchprotocols.org), 06.07.2017.

An earthquake rate forecast for Europe based on smoothed seismicity and smoothed fault contribution

NASA Astrophysics Data System (ADS)

Hiemer, Stefan; Woessner, Jochen; Basili, Roberto; Wiemer, Stefan

2013-04-01

The main objective of project SHARE (Seismic Hazard Harmonization in Europe) is to develop a community-based seismic hazard model for the Euro-Mediterranean region. The logic tree of earthquake rupture forecasts comprises several methodologies including smoothed seismicity approaches. Smoothed seismicity thus represents an alternative concept to express the degree of spatial stationarity of seismicity and provides results that are more objective, reproducible, and testable. Nonetheless, the smoothed-seismicity approach suffers from the common drawback of being generally based on earthquake catalogs alone, i.e. the wealth of knowledge from geology is completely ignored. We present a model that applies the kernel-smoothing method to both past earthquake locations and slip rates on mapped crustal faults and subductions. The result is mainly driven by the data, being independent of subjective delineation of seismic source zones. The core parts of our model are two distinct location probability densities: The first is computed by smoothing past seismicity (using variable kernel smoothing to account for varying data density). The second is obtained by smoothing fault moment rate contributions. The fault moment rates are calculated by summing the moment rate of each fault patch on a fully parameterized and discretized fault as available from the SHARE fault database. We assume that the regional frequency-magnitude distribution of the entire study area is well known and estimate the a- and b-value of a truncated Gutenberg-Richter magnitude distribution based on a maximum likelihood approach that considers the spatial and temporal completeness history of the seismic catalog. The two location probability densities are linearly weighted as a function of magnitude assuming that (1) the occurrence of past seismicity is a good proxy to forecast occurrence of future seismicity and (2) future large-magnitude events occur more likely in the vicinity of known faults. Consequently, the underlying location density of our model depends on the magnitude. We scale the density with the estimated a-value in order to construct a forecast that specifies the earthquake rate in each longitude-latitude-magnitude bin. The model is intended to be one branch of SHARE's logic tree of rupture forecasts and provides rates of events in the magnitude range of 5 <= m <= 8.5 for the entire region of interest and is suitable for comparison with other long-term models in the framework of the Collaboratory for the Study of Earthquake Predictability (CSEP).

Using gravimetry to probe small to large scale lithospheric structure at Fogo Island (Cape Verde)

NASA Astrophysics Data System (ADS)

Fernandes, R.; Bos, M. S.; Dumont, S.; Oliveira, C. S.; Miranda, E. H.; Almeida, P. G.

2017-12-01

The Fogo volcano is located on one of the Cape Verde islands in the Atlantic Ocean. Its last eruption was from November 2014 to February 2015 and destroyed two villages. To better understand its volcanic plumbing system, but also its eruptive dynamics that would contribute to hazard assessment and risk mitigation, the project "FIRE - Fogo Island volcano: multi-disciplinary Research on 2014/15 Eruption" was rapidly conceived in collaboration with local institutions. Despite a regular eruptive activity in the last centuries ( 20 years), no magmatic chamber has been evidenced yet and this is what we are investigating using gravimetry in the FIRE project. Approximately 70 relative new gravity observations were made by the C4G mission during the 2014 eruption, using a SCINTREX CG­3M gravimeter. The spacing between observation points was around 5 km for most of the island and around 2 km in Chã das Caldeiras, close to the 2014 eruption vent. In January 2017, 48 additional observations were made which densified the post-eruption observations in Chã das Caldeiras. The exact location of each observation point was determined with an accuracy of <10 cm from co­located GNSS receivers. The gravity residuals are fitted to the predicted gravity effect from modelled magma chambers with various diameters, depths and density contrasts in order to investigate if such a chamber can explain the measurements. A digital terrain model of the island, refined with a high-resolution terrain model of 10m resolution in the Chã das Caldeiras produced as part of the project, will be used to remove the gravitational effect of the topography. In addition, the new gravity observations can be used to improve global geopotential models such as EGM2008/EIGEN6C4 over the island and to compute a new elastic thickness of the crust underneath the island. Pim (2006) estimated that the elastic thickness Te is around 30 km in this region which is normal for the age of lithosphere, suggesting that it has not experienced thermal reheating due to the underlying mantle plume. Our measurements can verify these results. This is a contribution to Project FIRE (PTDC/GEOGEO/1123/2014) and scholarship SFRH/BPD/89923/2012 funded by FCT (Portugal). The GNSS solutions were computed using resources provided by C4G - Collaboratory for Geosciences (POCI-01-0145-FEDER-022151).

Geophysical Anomalies and Earthquake Prediction

NASA Astrophysics Data System (ADS)

Jackson, D. D.

2008-12-01

Finding anomalies is easy. Predicting earthquakes convincingly from such anomalies is far from easy. Why? Why have so many beautiful geophysical abnormalities not led to successful prediction strategies? What is earthquake prediction? By my definition it is convincing information that an earthquake of specified size is temporarily much more likely than usual in a specific region for a specified time interval. We know a lot about normal earthquake behavior, including locations where earthquake rates are higher than elsewhere, with estimable rates and size distributions. We know that earthquakes have power law size distributions over large areas, that they cluster in time and space, and that aftershocks follow with power-law dependence on time. These relationships justify prudent protective measures and scientific investigation. Earthquake prediction would justify exceptional temporary measures well beyond those normal prudent actions. Convincing earthquake prediction would result from methods that have demonstrated many successes with few false alarms. Predicting earthquakes convincingly is difficult for several profound reasons. First, earthquakes start in tiny volumes at inaccessible depth. The power law size dependence means that tiny unobservable ones are frequent almost everywhere and occasionally grow to larger size. Thus prediction of important earthquakes is not about nucleation, but about identifying the conditions for growth. Second, earthquakes are complex. They derive their energy from stress, which is perniciously hard to estimate or model because it is nearly singular at the margins of cracks and faults. Physical properties vary from place to place, so the preparatory processes certainly vary as well. Thus establishing the needed track record for validation is very difficult, especially for large events with immense interval times in any one location. Third, the anomalies are generally complex as well. Electromagnetic anomalies in particular require some understanding of their sources and the physical properties of the crust, which also vary from place to place and time to time. Anomalies are not necessarily due to stress or earthquake preparation, and separating the extraneous ones is a problem as daunting as understanding earthquake behavior itself. Fourth, the associations presented between anomalies and earthquakes are generally based on selected data. Validating a proposed association requires complete data on the earthquake record and the geophysical measurements over a large area and time, followed by prospective testing which allows no adjustment of parameters, criteria, etc. The Collaboratory for Study of Earthquake Predictability (CSEP) is dedicated to providing such prospective testing. Any serious proposal for prediction research should deal with the problems above, and anticipate the huge investment in time required to test hypotheses.

Earthquake forecasting test for Kanto district to reduce vulnerability of urban mega earthquake disasters

NASA Astrophysics Data System (ADS)

Yokoi, S.; Tsuruoka, H.; Nanjo, K.; Hirata, N.

2012-12-01

Collaboratory for the Study of Earthquake Predictability (CSEP) is a global project on earthquake predictability research. The final goal of this project is to search for the intrinsic predictability of the earthquake rupture process through forecast testing experiments. The Earthquake Research Institute, the University of Tokyo joined CSEP and started the Japanese testing center called as CSEP-Japan. This testing center provides an open access to researchers contributing earthquake forecast models applied to Japan. Now more than 100 earthquake forecast models were submitted on the prospective experiment. The models are separated into 4 testing classes (1 day, 3 months, 1 year and 3 years) and 3 testing regions covering an area of Japan including sea area, Japanese mainland and Kanto district. We evaluate the performance of the models in the official suite of tests defined by CSEP. The total number of experiments was implemented for approximately 300 rounds. These results provide new knowledge concerning statistical forecasting models. We started a study for constructing a 3-dimensional earthquake forecasting model for Kanto district in Japan based on CSEP experiments under the Special Project for Reducing Vulnerability for Urban Mega Earthquake Disasters. Because seismicity of the area ranges from shallower part to a depth of 80 km due to subducting Philippine Sea plate and Pacific plate, we need to study effect of depth distribution. We will develop models for forecasting based on the results of 2-D modeling. We defined the 3D - forecasting area in the Kanto region with test classes of 1 day, 3 months, 1 year and 3 years, and magnitudes from 4.0 to 9.0 as in CSEP-Japan. In the first step of the study, we will install RI10K model (Nanjo, 2011) and the HISTETAS models (Ogata, 2011) to know if those models have good performance as in the 3 months 2-D CSEP-Japan experiments in the Kanto region before the 2011 Tohoku event (Yokoi et al., in preparation). We use CSEP-Japan experiments as a starting model of non-divided column in a depth. In the presentation, we will discuss the performance of the models comparing results of the Kanto district with those obtained in all over Japan by CSEP-Japan and also add to discuss the results of the 3-month experiments after the 2011 Tohoku earthquake to understand the learning ability of the models associated with recent seismicity of the area.

An Earthquake Rupture Forecast model for central Italy submitted to CSEP project

NASA Astrophysics Data System (ADS)

Pace, B.; Peruzza, L.

2009-04-01

We defined a seismogenic source model for central Italy and computed the relative forecast scenario, in order to submit the results to the CSEP (Collaboratory for the study of Earthquake Predictability, www.cseptesting.org) project. The goal of CSEP project is developing a virtual, distributed laboratory that supports a wide range of scientific prediction experiments in multiple regional or global natural laboratories, and Italy is the first region in Europe for which fully prospective testing is planned. The model we propose is essentially the Layered Seismogenic Source for Central Italy (LaSS-CI) we published in 2006 (Pace et al., 2006). It is based on three different layers of sources: the first one collects the individual faults liable to generate major earthquakes (M >5.5); the second layer is given by the instrumental seismicity analysis of the past two decades, which allows us to evaluate the background seismicity (M ~<5.0). The third layer utilizes all the instrumental earthquakes and the historical events not correlated to known structures (4.5

Analysis, Mining and Visualization Service at NCSA

NASA Astrophysics Data System (ADS)

Wilhelmson, R.; Cox, D.; Welge, M.

2004-12-01

NCSA's goal is to create a balanced system that fully supports high-end computing as well as: 1) high-end data management and analysis; 2) visualization of massive, highly complex data collections; 3) large databases; 4) geographically distributed Grid computing; and 5) collaboratories, all based on a secure computational environment and driven with workflow-based services. To this end NCSA has defined a new technology path that includes the integration and provision of cyberservices in support of data analysis, mining, and visualization. NCSA has begun to develop and apply a data mining system-NCSA Data-to-Knowledge (D2K)-in conjunction with both the application and research communities. NCSA D2K will enable the formation of model-based application workflows and visual programming interfaces for rapid data analysis. The Java-based D2K framework, which integrates analytical data mining methods with data management, data transformation, and information visualization tools, will be configurable from the cyberservices (web and grid services, tools, ..) viewpoint to solve a wide range of important data mining problems. This effort will use modules, such as a new classification methods for the detection of high-risk geoscience events, and existing D2K data management, machine learning, and information visualization modules. A D2K cyberservices interface will be developed to seamlessly connect client applications with remote back-end D2K servers, providing computational resources for data mining and integration with local or remote data stores. This work is being coordinated with SDSC's data and services efforts. The new NCSA Visualization embedded workflow environment (NVIEW) will be integrated with D2K functionality to tightly couple informatics and scientific visualization with the data analysis and management services. Visualization services will access and filter disparate data sources, simplifying tasks such as fusing related data from distinct sources into a coherent visual representation. This approach enables collaboration among geographically dispersed researchers via portals and front-end clients, and the coupling with data management services enables recording associations among datasets and building annotation systems into visualization tools and portals, giving scientists a persistent, shareable, virtual lab notebook. To facilitate provision of these cyberservices to the national community, NCSA will be providing a computational environment for large-scale data assimilation, analysis, mining, and visualization. This will be initially implemented on the new 512 processor shared memory SGI's recently purchased by NCSA. In addition to standard batch capabilities, NCSA will provide on-demand capabilities for those projects requiring rapid response (e.g., development of severe weather, earthquake events) for decision makers. It will also be used for non-sequential interactive analysis of data sets where it is important have access to large data volumes over space and time.

The SCEC Community Modeling Environment(SCEC/CME): A Collaboratory for Seismic Hazard Analysis

NASA Astrophysics Data System (ADS)

Maechling, P. J.; Jordan, T. H.; Minster, J. B.; Moore, R.; Kesselman, C.

2005-12-01

The SCEC Community Modeling Environment (SCEC/CME) Project is an NSF-supported Geosciences/IT partnership that is actively developing an advanced information infrastructure for system-level earthquake science in Southern California. This partnership includes SCEC, USC's Information Sciences Institute (ISI), the San Diego Supercomputer Center (SDSC), the Incorporated Institutions for Research in Seismology (IRIS), and the U.S. Geological Survey. The goal of the SCEC/CME is to develop seismological applications and information technology (IT) infrastructure to support the development of Seismic Hazard Analysis (SHA) programs and other geophysical simulations. The SHA application programs developed on the Project include a Probabilistic Seismic Hazard Analysis system called OpenSHA. OpenSHA computational elements that are currently available include a collection of attenuation relationships, and several Earthquake Rupture Forecasts (ERFs). Geophysicists in the collaboration have also developed Anelastic Wave Models (AWMs) using both finite-difference and finite-element approaches. Earthquake simulations using these codes have been run for a variety of earthquake sources. Rupture Dynamic Model (RDM) codes have also been developed that simulate friction-based fault slip. The SCEC/CME collaboration has also developed IT software and hardware infrastructure to support the development, execution, and analysis of these SHA programs. To support computationally expensive simulations, we have constructed a grid-based scientific workflow system. Using the SCEC grid, project collaborators can submit computations from the SCEC/CME servers to High Performance Computers at USC and TeraGrid High Performance Computing Centers. Data generated and archived by the SCEC/CME is stored in a digital library system, the Storage Resource Broker (SRB). This system provides a robust and secure system for maintaining the association between the data seta and their metadata. To provide an easy-to-use system for constructing SHA computations, a browser-based workflow assembly web portal has been developed. Users can compose complex SHA calculations, specifying SCEC/CME data sets as inputs to calculations, and calling SCEC/CME computational programs to process the data and the output. Knowledge-based software tools have been implemented that utilize ontological descriptions of SHA software and data can validate workflows created with this pathway assembly tool. Data visualization software developed by the collaboration supports analysis and validation of data sets. Several programs have been developed to visualize SCEC/CME data including GMT-based map making software for PSHA codes, 4D wavefield propagation visualization software based on OpenGL, and 3D Geowall-based visualization of earthquakes, faults, and seismic wave propagation. The SCEC/CME Project also helps to sponsor the SCEC UseIT Intern program. The UseIT Intern Program provides research opportunities in both Geosciences and Information Technology to undergraduate students in a variety of fields. The UseIT group has developed a 3D data visualization tool, called SCEC-VDO, as a part of this undergraduate research program.

Science as a Second Language: Acquiring Fluency through Science Enterprises

NASA Astrophysics Data System (ADS)

Shope, R. E.

2012-12-01

Science Enterprises are problems that students genuinely want to solve, questions that students genuinely want to answer, that naturally entail reading, writing, exploration, investigation, and discussion. Engaging students in personally-relevant science enterprises provides both a diagnostic opportunity and a context for providing students the comprehensible input they need. We can differentiate instruction by creating science enterprise zones that are set up for the incremental increase in challenge for the students. Comprehensible input makes reachable, those just-out-of-reach concepts in the mix of the familiar and the new. We explore a series of science enterprise tools that have been developed and implemented in the context of informal science education projects that have reached over 10,000 urban youth in the Greater Los Angles area over the past six years. 1) The ED3U Science Inquiry Model, a learning cycle model that accounts for conceptual change; 2) The ¿NQUIRY Wheel, a compass of scientific inquiry strategies; 3) Inquiry Science Expeditions, a way of laying out a science learning environment, emulating a field and lab research collaboratory; 4) The Science Educative Experience Scale, a diagnostic measure of the quality of the science learning experience; and 5) Science Mimes, participatory enactment of science understanding. Practical examples of Science Enterprises will be presented, including a range of projects: Watershed Ecology; Astrobiology; Mars Rovers; Planetary Science; Icy Worlds. BACKGROUND: Language Acquisition is an informal process that occurs in the midst of exploring, solving problems, seeking answers to questions, playing, reading for pleasure, conversing, discussing, where the focus is not specifically on language development, but on the activity, which is of interest to the participant. Language Learning is a formal education process, the language arts aspect of the school day: the direct teaching of reading, writing, grammar, spelling, and speaking. Fluency results primarily from language acquisition and secondarily from language learning. We can view the problem of science education and communication as similar to language acquisition. Science Learning is a formal education process, the school science aspect of the school day: the direct teaching of standards-aligned science content. Science Acquisition is an informal process that occurs in the midst of exploring, solving problems, seeking answers to questions, playing, experimenting for pleasure, conversing, discussing, where the focus is not specifically on science content development, but on the inquiry activity, driven by the curiosity of the participant. Comprehensible input refers to the premise that we acquire language in the midst of activity when we understand the message; that is, when we understand what we hear or what we read or what we see. Acquisition is caused by comprehensible input as it occurs in the midst of a rich environment of language activity while doing something of interest to the learner. Providing comprehensible input is not the same as oversimplifying or "dumbing down." It is devising ways to create conditions where the interest of the learner is piqued.

Science As A Second Language: Acquiring Fluency through Science Enterprises

NASA Astrophysics Data System (ADS)

Shope, R.; EcoVoices Expedition Team

2013-05-01

Science Enterprises are problems that students genuinely want to solve, questions that students genuinely want to answer, that naturally entail reading, writing, investigation, and discussion. Engaging students in personally-relevant science enterprises provides both a diagnostic opportunity and a context for providing students the comprehensible input they need. We can differentiate instruction by creating science enterprise zones that are set up for the incremental increase in challenge for the students. Comprehensible input makes reachable, those just-out-of-reach concepts in the mix of the familiar and the new. EcoVoices takes students on field research expeditions within an urban natural area, the San Gabriel River Discovery Center. This project engages students in science enterprises focused on understanding ecosystems, ecosystem services, and the dynamics of climate change. A sister program, EcoVoces, has been launched in Mexico, in collaboration with the Universidad Loyola del Pacífico. 1) The ED3U Science Inquiry Model, a learning cycle model that accounts for conceptual change: Explore { Diagnose, Design, Discuss } Use. 2) The ¿NQUIRY Wheel, a compass of scientific inquiry strategies; 3) Inquiry Science Expeditions, a way of laying out a science learning environment, emulating a field and lab research collaboratory; 4) The Science Educative Experience Scale, a diagnostic measure of the quality of the science learning experience; and 5) Mimedia de la Ciencia, participatory enactment of science concepts using techniques of mime and improvisational theater. BACKGROUND: Science has become a vehicle for teaching reading, writing, and other communication skills, across the curriculum. This new emphasis creates renewed motivation for Scientists and Science Educators to work collaboratively to explore the common ground between acquiring science understanding and language acquisition theory. Language Acquisition is an informal process that occurs in the midst of exploring, solving problems, seeking answers to questions, playing, reading for pleasure, conversing, discussing, where the focus is not specifically on language development, but on the activity, which is of interest to the participant. Language Learning is a formal education process, the language arts aspect of the school day: the direct teaching of reading, writing, grammar, spelling, and speaking. Fluency results primarily from language acquisition and secondarily from language learning. We can view the problem of science education and communication as similar to language acquisition. Science Learning is a formal education process, the school science aspect of the school day: the direct teaching of standards-aligned science content. Science Acquisition is an informal process that occurs in the midst of exploring, solving problems, seeking answers to questions, playing, experimenting for pleasure, conversing, discussing, where the focus is not specifically on science content development, but on the inquiry activity, driven by the curiosity of the participant. Treating Science as a Second Language shifts the evaluation of science learning to include gauging the extent to which students choose to deepen their pursuit of science learning.

Operational Earthquake Forecasting: Proposed Guidelines for Implementation (Invited)

NASA Astrophysics Data System (ADS)

Jordan, T. H.

2010-12-01

The goal of operational earthquake forecasting (OEF) is to provide the public with authoritative information about how seismic hazards are changing with time. During periods of high seismic activity, short-term earthquake forecasts based on empirical statistical models can attain nominal probability gains in excess of 100 relative to the long-term forecasts used in probabilistic seismic hazard analysis (PSHA). Prospective experiments are underway by the Collaboratory for the Study of Earthquake Predictability (CSEP) to evaluate the reliability and skill of these seismicity-based forecasts in a variety of tectonic environments. How such information should be used for civil protection is by no means clear, because even with hundredfold increases, the probabilities of large earthquakes typically remain small, rarely exceeding a few percent over forecasting intervals of days or weeks. Civil protection agencies have been understandably cautious in implementing formal procedures for OEF in this sort of “low-probability environment.” Nevertheless, the need to move more quickly towards OEF has been underscored by recent experiences, such as the 2009 L’Aquila earthquake sequence and other seismic crises in which an anxious public has been confused by informal, inconsistent earthquake forecasts. Whether scientists like it or not, rising public expectations for real-time information, accelerated by the use of social media, will require civil protection agencies to develop sources of authoritative information about the short-term earthquake probabilities. In this presentation, I will discuss guidelines for the implementation of OEF informed by my experience on the California Earthquake Prediction Evaluation Council, convened by CalEMA, and the International Commission on Earthquake Forecasting, convened by the Italian government following the L’Aquila disaster. (a) Public sources of information on short-term probabilities should be authoritative, scientific, open, and timely, and they need to convey the epistemic uncertainties in the operational forecasts. (b) Earthquake probabilities should be based on operationally qualified, regularly updated forecasting systems. All operational procedures should be rigorously reviewed by experts in the creation, delivery, and utility of earthquake forecasts. (c) The quality of all operational models should be evaluated for reliability and skill by retrospective testing, and the models should be under continuous prospective testing in a CSEP-type environment against established long-term forecasts and a wide variety of alternative, time-dependent models. (d) Short-term models used in operational forecasting should be consistent with the long-term forecasts used in PSHA. (e) Alert procedures should be standardized to facilitate decisions at different levels of government and among the public, based in part on objective analysis of costs and benefits. (f) In establishing alert procedures, consideration should also be made of the less tangible aspects of value-of-information, such as gains in psychological preparedness and resilience. Authoritative statements of increased risk, even when the absolute probability is low, can provide a psychological benefit to the public by filling information vacuums that can lead to informal predictions and misinformation.

Tracking Galaxy Evolution Through Low-Frequency Radio Continuum Observations using SKA and Citizen-Science Research using Multi-Wavelength Data

NASA Astrophysics Data System (ADS)

Hota, Ananda; Konar, C.; Stalin, C. S.; Vaddi, Sravani; Mohanty, Pradeepta K.; Dabhade, Pratik; Dharmik Bhoga, Sai Arun; Rajoria, Megha; Sethi, Sagar

2016-12-01

We present a brief review of progress in the understanding of general spiral and elliptical galaxies, through merger, star formation and AGN activities. With reference to case studies performed with the GMRT, we highlight the unique aspects of studying galaxies in the radio wavelengths where powerful quasars and bright radio galaxies are traditionally the dominating subjects. Though AGN or quasar activity is extremely energetic, it is extremely short-lived. This justify focussing on transitional galaxies to find relic-evidences of the immediate past AGN-feedback which decide the future course of evolution of a galaxy. Relic radio lobes can be best detected in low frequency observations with the GMRT, LOFAR and in future SKA. The age of these relic radio plasma can be as old as a few hundred Myr. There is a huge gap between this and what is found in optical bands. The very first relic-evidences of a past quasar activity (Hanny's Voorwerp) was discovered in 2007 by a Galaxy Zoo citizen-scientist, a school teacher, in the optical bands. This relic is around a few tens of thousand years old. More discoveries needed to match these time-scales with star formation time-scales in AGN host galaxies to better understand black hole galaxy co-evolution process via feedback-driven quenching of star formation. It is now well-accepted that discovery and characterization of such faint fuzzy relic features can be more efficiently done by human eye than a machine. Radio interferometry images are more complicated than optical and need the citizen-scientists to be trained. RAD@home, the only Indian citizen-science research project in astronomy, analysing TIFR GMRT Sky Survey (TGSS) 150 MHz data and observing from the Giant Meterwave Radio Telescope (GMRT), was launched in April 2013. Unique, zero-infrastructure zero-funded design of RAD@home as a collaboratory of 69 trained e-astronomers is briefly described. Some of the new-found objects like episodic radio galaxies, radio-jet and companion galaxy interaction, radio galaxy bent by motion of the intra-filament medium in a Mpc-scale galaxy filament etc. are briefly presented as demonstration of its potential. Citizen-science has not only opened up a new way for astronomy research but also possibly the only promising way to extract maximum science out of the Big Data in the SKA-era. This possibly can convert the Big Data problem into a prospect. Citizen-science can contribute to the knowledge creation in never-seen-before speed and in approach. As it is based on internet, it can provide an equal opportunity of academic-growth to people even in the under-developed regions where we always need to put our optical and radio telescopes. This can liberate the research-activity of city-based research-institutes out of the four brick walls and alleviate various socio-economic and geo-political constraints on growth of citizens educated in undergraduate-level science but located in remote areas.

Robust Satellite Techniques (RST) for monitoring earthquake prone areas by satellite TIR observations: The case of 1999 Chi-Chi earthquake (Taiwan)

NASA Astrophysics Data System (ADS)

Genzano, N.; Filizzola, C.; Paciello, R.; Pergola, N.; Tramutoli, V.

2015-12-01

For more than 13 years a multi-temporal data-analysis method, named Robust Satellite Techniques (RST), has been being applied to satellite Thermal InfraRed (TIR) monitoring of seismically active regions. It gives a clear definition of a TIR anomaly within a validation/confutation scheme devoted to verify if detected anomalies can be associated or not to the time and location of the occurrence of major earthquakes. In this scheme, the confutation part (i.e. verifying if similar anomalies do not occur in the absence of a significant seismic activity) assumes a role even much important than the usual validation component devoted to verify the presence of anomalous signal transients before (or in association with) specific seismic events. Since 2001, RST approach has been being used to study tens of earthquakes with a wide range of magnitudes (from 4.0 to 7.9) occurred in different continents and in various geo-tectonic settings. In this paper such a long term experience is exploited in order to give a quantitative definition of a significant sequence of TIR anomalies (SSTA) in terms of the required space-time continuity constraints (persistence), identifying also the different typologies of known spurious sequences of TIR anomalies that have to be excluded from the following validation steps. On the same basis, taking also into account for the physical models proposed for justifying the existence of a correlation between TIR anomalies and earthquakes occurrence, specific validation rules (in line with the ones used by the Collaboratory for the Study of Earthquake Predictability - CSEP - Project) have been defined to drive the validation process. In this work, such an approach is applied for the first time to a long-term dataset of night-time GMS-5/VISSR (Geostationary Meteorological Satellite/Visible and Infrared Spin-Scan Radiometer) TIR measurements, comparing SSTAs and earthquakes with M > 4 which occurred in a wide area around Taiwan, in the month of September of different years (from 1995 to 2002). In this dataset the Chi-Chi earthquake (MW = 7.6) which occurred on September 20, 1999 represents the major, but not unique, event. The analysis shows that all identified SSTAs occur in the pre-fixed space-time window around (in terms of time and location) earthquakes with M > 4. The false positive rate remains zero even if only earthquakes with M > 4.5 are considered. In the case of the Chi-Chi earthquake, 3 SSTAs were identified (all within the established space-time correlation window), one of them appearing about 2 weeks before and very close to the epicentre of the earthquake just along the associated tectonic lineaments. The wide considered space-time window, together with the high seismicity of the considered area, surely positively conditioned the achieved results, so that further analyses should be carried out by using longer datasets and different geographic areas. However, also considering the coincidence with other (possible) precursor phenomena, independently reported (particularly within the iSTEP project) at the time of the Chi Chi earthquake, achieved results seem already sufficient (at least) to qualify TIR anomalies (identified by RST) among the parameters to be considered in the framework of a multi-parametric approach to a time-Dependent Assessment of Seismic Hazard (t-DASH).

FOGO-2014: Monitoring the Fogo 2014 Eruption, Cape Verde

NASA Astrophysics Data System (ADS)

Fernandes, Rui; Faria, Bruno

2015-04-01

Fogo volcano, located in the Cape Verde Archipelago offshore Western Africa, is a complete stratovolcano system that was created by the Cape Verde hotspot, forming the island of Fogo. The top (Pico do Fogo) reaches ~2830m above sea level, and raises ~1100m above Chã das Caldeiras, an almost flat circular area with approximately 10 kilometres in the north-south direction and 7 kilometres in the east-west direction. Chã das Caldeiras, surrounded towards the West by the ~1000m high Bordeira rampart, has been inhabited since the early 20th Century, because it is one of the most productive agricultural areas in this semi-arid country. Fogo volcano erupted on November 23, 2014 (~10:00UTC) on a subsidiary vent of the main cone, after 19 years of inactivity. C4G (Collaboratory for Geosciences), a distributed research infrastructure created in 2014 in the framework of the Portuguese Roadmap for Strategic Research Infrastructures, immediately offered support to the Cape Verdean authorities, with the goal of complementing the permanent geophysical monitoring network operated in Fogo island by INMG, the Cape Verdean Meteorological and Geophysical Institute. This permanent network is composed of seven seismographic stations and three tiltmeter stations, and the data is transmitted in real time to the INMG geophysical laboratory in São Vicente Island, where it is analysed on a routine basis. Pre-eruptive activity started to be detected by the permanent monitoring network on October 2014, with earthquakes occurring at depths larger than 15 km. These events led to a first volcanic warning to the Cape Verdean Civil Protection Agency. On November 22 several volcano-tectonic earthquakes were recorded at shallow depths, indicating shallow fracturing. On the basis of this activity, INMG issued a formal alert of an impending eruption to the Civil Protection Agency, ~24 hours before the onset of the eruption. Volcanic tremor and clear tiltmeter signals were recorded about one hour before the eruption began. The Copernicus Emergency Management Service was also activated and several maps of lava flows advance and general site information were produced, based on Earth Observation, to facilitate crisis management. The eruption caused no casualties or personal injuries. The lava expelled by the current eruption (still active at the time of submission, January 6, 2015, but declining) destroyed the two main villages in the caldera (~1000 inhabitants), previously evacuated, and covered vast areas of agricultural land, causing very large economic losses and an uncertain future of the local populations. The C4G team installed a network of seven cGNSS receivers and nine seismometers, distributed in Fogo Island. The operation of the equipment started on 28th November 2014, and will continue until the end of January 2015. The mission also included a new detailed gravimetric survey of the island, the acquisition of geological samples, and the analysis of the air quality during the eruption. We present here a detailed description of the monitoring efforts carried out during the eruption as well as initial results of the analysis of the data collected. This monitoring effort carried out at the request and in collaboration with INMG, was made possible by an emergency financial support provided by Fundação para a Ciência e Tecnologia, Portugal.

Western Hemisphere Knowledge Partnerships

NASA Astrophysics Data System (ADS)

Malone, T. F.

2001-05-01

Society in general, and geophysicists in particular, are challenged by problems and opportunities in the prospects for an additional three billion people on finite planet Earth by 2050 in a global economy four to six times larger than it is at present. A problem was identified by the Pilot Assessment of Global Ecosystems (PAGE): "If we choose to continue our current patterns of use, we face almost certain decline in the ability of ecosystems to yield their broad spectrum of benefits - from clean water to stable climate, fuel wood to food crops, timber to wildlife habitat." This is the issue of environmental sustainability. Another problem is the widening gap in wealth and health between affluent nations and impoverished countries. Every day each of the more than a billion people in the industrial nations produces goods and services worth nearly 60 dollars to meet their basic needs and "wants." This figure increases by about 85 cents annually. Every day each of the 600 million people in the least developed countries produces goods and services worth about 75 cents to meet their basic needs and limited wants. That number grows by less that a penny a day annually. This is the issue of economic prosperity and equity. By harnessing revolutionary technologies in communications to distribute expanding knowledge in the physical, chemical, and geophysical sciences and exploding knowledge in the biological and health sciences, a new vision for world society is brought within reach in The Knowledge Age. It is a society in which all of the basic human needs and an equitable share of human wants can be met while maintaining healthy, attractive, and biologically productive ecosystems. This society is environmentally sustainable, economically prosperous and equitable, and therefore likely to be politically stable. The time has arrived to fashion a strategy to pursue that vision. A knowledge-based and human-centered strategy will involve the discovery, integration, dissemination, and application of knowledge concerning the nature of -- and interaction among -- matter, living organisms, energy, information, and human behavior. This strategy calls for innovative partnerships among the physical, biological, health, and social sciences, engineering, and the humanities. New kinds of partnership must also be forged among academia, business and industry, governments, and nongovernmental organizations. Geophysicists can play an important role in these partnerships. A focus for these partnerships is to manage the individual economic productivity that drives both human development and global change. As world population approaches stability during the twenty-first century, individual economic productivity will be the critical link between the human and the natural systems on planet Earth. AGU is among a core group of individuals and institutions proposing Western Hemisphere Knowledge Partnerships (WHKP) to test the hypothesis that knowledge, broadly construed, is an important organizing principle in choosing a path into the future. The WHKP agenda includes: (1) life-long learning, (2) the health and resilience of natural ecosystems, (3) eco-efficiency in economic production and consumption, (4) extension of national income accounts, (5) environmentally benign sources of energy, (6) delivery of health care, (7) intellectual property rights, and (8) networks for action by local communities.Collaboratories and distance education technologies will be major tools. A panel of experts will explore this proposal.

Students Excited by Stellar Discovery

NASA Astrophysics Data System (ADS)

2011-02-01

In the constellation of Ophiuchus, above the disk of our Milky Way Galaxy, there lurks a stellar corpse spinning 30 times per second -- an exotic star known as a radio pulsar. This object was unknown until it was discovered last week by three high school students. These students are part of the Pulsar Search Collaboratory (PSC) project, run by the National Radio Astronomy Observatory (NRAO) in Green Bank, WV, and West Virginia University (WVU). The pulsar, which may be a rare kind of neutron star called a recycled pulsar, was discovered independently by Virginia students Alexander Snider and Casey Thompson, on January 20, and a day later by Kentucky student Hannah Mabry. "Every day, I told myself, 'I have to find a pulsar. I better find a pulsar before this class ends,'" said Mabry. When she actually made the discovery, she could barely contain her excitement. "I started screaming and jumping up and down." Thompson was similarly expressive. "After three years of searching, I hadn't found a single thing," he said, "but when I did, I threw my hands up in the air and said, 'Yes!'." Snider said, "It actually feels really neat to be the first person to ever see something like that. It's an uplifting feeling." As part of the PSC, the students analyze real data from NRAO's Robert C. Byrd Green Bank Telescope (GBT) to find pulsars. The students' teachers -- Debra Edwards of Sherando High School, Leah Lorton of James River High School, and Jennifer Carter of Rowan County Senior High School -- all introduced the PSC in their classes, and interested students formed teams to continue the work. Even before the discovery, Mabry simply enjoyed the search. "It just feels like you're actually doing something," she said. "It's a good feeling." Once the pulsar candidate was reported to NRAO, Project Director Rachel Rosen took a look and agreed with the young scientists. A followup observing session was scheduled on the GBT. Snider and Mabry traveled to West Virginia to assist in the follow-up observations, and Thompson joined online. "Observing with the students is very exciting. It gives the students a chance to learn about radio telescopes and pulsar observing in a very hands-on way, and it is extra fun when we find a pulsar," said Rosen. Snider, on the other hand, said, "I got very, very nervous. I expected when I went there that I would just be watching other people do things, and then I actually go to sit down at the controls. I definitely didn't want to mess something up." Everything went well, and the observations confirmed that the students had found an exotic pulsar. "I learned more in the two hours in the control room than I would have in school the whole day," Mabry said. Pulsars are spinning neutron stars that sling lighthouse beams of radio waves or light around as they spin. A neutron star is what is left after a massive star explodes at the end of its normal life. With no nuclear fuel left to produce energy to offset the stellar remnant's weight, its material is compressed to extreme densities. The pressure squeezes together most of its protons and electrons to form neutrons; hence, the name neutron star. One tablespoon of material from a pulsar would weigh 10 million tons -- as much as a supertanker. The object that the students discovered is in a special class of pulsar that spins very fast - in this case, about 30 times per second, comparable to the speed of a kitchen blender. "The big question we need to answer first is whether this is a young pulsar or a recycled pulsar," said Maura McLaughlin, an astronomer at WVU. "A pulsar spinning that fast is very interesting as it could be newly born or it could be a very old, recycled pulsar." A recycled pulsar is one that was once in a binary system. Material from the companion star is deposited onto the pulsar, causing it to speed up, or be recycled. Mystery remains, however, about whether this pulsar has ever had a companion star. If it did, "it may be that this pulsar had a massive companion that exploded in a supernova, disrupting its orbit," McLaughlin said. Astronomers and students will work together in the coming months to find answers to these questions. The PSC is a joint project of the National Radio Astronomy Observatory and West Virginia University, funded by a grant from the National Science Foundation. The PSC, led by NRAO Education Officer Sue Ann Heatherly and Project Director Rachel Rosen, includes training for teachers and student leaders, and provides parcels of data from the GBT to student teams. The project involves teachers and students in helping astronomers analyze data from the GBT, a giant, 17-million-pound telescope. Some 300 hours of observing data were reserved for analysis by student teams. Thompson, Snider, and Mabry have been working with about 170 other students across the country. The responsibility for the work, and for the discoveries, is theirs. They are trained by astronomers and by their teachers to distinguish between pulsars and noise. The students' collective judgment sifts the pulsars from the noise. All three students had analyzed thousands of data plots before coming upon this one. Casey Thompson, who has been with the PSC for three years, has analyzed more than 30,000 plots. "Sometimes I just stop and think about the fact that I'm looking at data from space," Thompson said. "It's really special to me." In addition to this discovery, two other astronomical objects have been discovered by students. In 2009, Shay Bloxton of Summersville, WV, discovered a pulsar that spins once every four seconds, and Lucas Bolyard of Clarksburg, WV, discovered a rapidly rotating radio transient, which astronomers believe is a pulsar that emits radio waves in bursts. Those involved in the PSC hope that being a part of astronomy will give students an appreciation for science. Maybe the project will even produce some of the next generation of astronomers. Snider, surely, has been inspired. "The PSC changed my career path," confessed Thompson. "I'm going to study astrophysics." Snider is pleased with the idea of contributing to scientific knowledge. "I hope that astronomers at Green Bank and around the world can learn something from the discovery," he said. Mabry is simply awed. "We've actually been able to experience something," she said. The PSC will continue through 2011. Teachers interested in participating in the program can learn more at this link, http://www.gb.nrao.edu/epo/psc.shtml.

Method for forming materials

DOEpatents

Tolle, Charles R [Idaho Falls, ID; Clark, Denis E [Idaho Falls, ID; Smartt, Herschel B [Idaho Falls, ID; Miller, Karen S [Idaho Falls, ID

2009-10-06

A material-forming tool and a method for forming a material are described including a shank portion; a shoulder portion that releasably engages the shank portion; a pin that releasably engages the shoulder portion, wherein the pin defines a passageway; and a source of a material coupled in material flowing relation relative to the pin and wherein the material-forming tool is utilized in methodology that includes providing a first material; providing a second material, and placing the second material into contact with the first material; and locally plastically deforming the first material with the material-forming tool so as mix the first material and second material together to form a resulting material having characteristics different from the respective first and second materials.

Rare earth-doped materials with enhanced thermoelectric figure of merit

DOE Office of Scientific and Technical Information (OSTI.GOV)

Venkatasubramanian, Rama; Cook, Bruce Allen; Levin, Evgenii M.

A thermoelectric material and a thermoelectric converter using this material. The thermoelectric material has a first component including a semiconductor material and a second component including a rare earth material included in the first component to thereby increase a figure of merit of a composite of the semiconductor material and the rare earth material relative to a figure of merit of the semiconductor material. The thermoelectric converter has a p-type thermoelectric material and a n-type thermoelectric material. At least one of the p-type thermoelectric material and the n-type thermoelectric material includes a rare earth material in at least one ofmore » the p-type thermoelectric material or the n-type thermoelectric material.« less

Microwave impregnation of porous materials with thermal energy storage materials

DOEpatents

Benson, David K.; Burrows, Richard W.

1993-01-01

A method for impregnating a porous, non-metallic construction material with a solid phase-change material is described. The phase-change material in finely divided form is spread onto the surface of the porous material, after which the porous material is exposed to microwave energy for a time sufficient to melt the phase-change material. The melted material is spontaneously absorbed into the pores of the porous material. A sealing chemical may also be included with the phase-change material (or applied subsequent to the phase-change material) to seal the surface of the porous material. Fire retardant chemicals may also be included with the phase-change materials. The treated construction materials are better able to absorb thermal energy and exhibit increased heat storage capacity.

Microwave impregnation of porous materials with thermal energy storage materials

DOEpatents

Benson, D.K.; Burrows, R.W.

1993-04-13

A method for impregnating a porous, non-metallic construction material with a solid phase-change material is described. The phase-change material in finely divided form is spread onto the surface of the porous material, after which the porous material is exposed to microwave energy for a time sufficient to melt the phase-change material. The melted material is spontaneously absorbed into the pores of the porous material. A sealing chemical may also be included with the phase-change material (or applied subsequent to the phase-change material) to seal the surface of the porous material. Fire retardant chemicals may also be included with the phase-change materials. The treated construction materials are better able to absorb thermal energy and exhibit increased heat storage capacity.

Method and apparatus for biological material separation

DOEpatents

Robinson, Donna L.

2005-05-10

There has been invented an apparatus comprising a separation barrier for excluding denser cell materials from less dense cell materials after centrifuging of the cells so that selected materials can be withdrawn from the less dense cell materials without inclusion of the denser cell materials or clogging of sampling equipment with denser cell materials. Cells from which selected material is to be withdrawn are centrifuged, either as cells or cells in media. Once the denser cell materials are isolated in a layer by centrifugal force, an invention screen or seive is submerged in the less dense cell material to a level above the layer of denser cell materials to isolate the denser cell materials from the less dense cell materials, preventing mixing of the denser cell materials back into the less dense cell materials when the cells or the cells in media are no longer being centrifuged and to prevent clogging of sampling equipment with denser cell materials. In a particularly useful application of the invention method and apparatus, plasmid DNA can be withdrawn from less dense cell materials without contamination or interference with denser cell materials.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tooker, Angela C.; Felix, Sarah H.; Pannu, Satinderpall S.

A neural interface includes a first dielectric material having at least one first opening for a first electrical conducting material, a first electrical conducting material in the first opening, and at least one first interconnection trace electrical conducting material connected to the first electrical conducting material. A stiffening shank material is located adjacent the first dielectric material, the first electrical conducting material, and the first interconnection trace electrical conducting material.

Space Materials Handbook. 3rd; ed.

NASA Technical Reports Server (NTRS)

Rittenhouse, John B.; Singletary, John B.

1969-01-01

This edition is the result of an extensive revision and reworking of the second edition of the Space Materials Handbook along with the incorporation of entirely new subject matter coverage and new materials data. All of the most significant material, phenomena, properties, and principles covered in the original Handbook are presented and expanded in this revised and updated version. However, treatment of theoretical aspects has been condensed in order that more emphasis could be placed on the extensive new materials knowledge and data obtained from the design and successful launching of a wide variety of space systems. The handbook is organized into four parts, namely: space environment, effect of space environment on materials, materials in space, and biological interaction with spacecraft materials. Information on mechanical, physical, and chemical properties and characteristics is given for a wide variety of metallic and nonmetallic materials. The effects of natural and induced environments on materials are appraised. Materials categories include coverage of thermal control materials, optical materials, adhesives, organic structural materials, inorganic structural materials, electronic components and materials, materials for sealing applications, and lubrication materials. In addition, a comprehensive multiple citation index is incorporated which gives ready access to information on specific subject areas with regard to their locations within the Handbook.

Nuclear reactor target assemblies, nuclear reactor configurations, and methods for producing isotopes, modifying materials within target material, and/or characterizing material within a target material

DOE Office of Scientific and Technical Information (OSTI.GOV)

Toth, James J.; Wall, Donald; Wittman, Richard S.

Target assemblies are provided that can include a uranium-comprising annulus. The assemblies can include target material consisting essentially of non-uranium material within the volume of the annulus. Reactors are disclosed that can include one or more discrete zones configured to receive target material. At least one uranium-comprising annulus can be within one or more of the zones. Methods for producing isotopes within target material are also disclosed, with the methods including providing neutrons to target material within a uranium-comprising annulus. Methods for modifying materials within target material are disclosed as well as are methods for characterizing material within a targetmore » material.« less

EDITORIAL: Adaptive and Active Materials: Selected Papers from the ASME 2008 Conference on Smart Materials, Adaptive Structures and Intelligent Systems (SMASIS 08) (Maryland, USA, 28-30 October 2008) Adaptive and Active Materials: Selected Papers from the ASME 2008 Conference on Smart Materials, Adaptive Structures and Intelligent Systems (SMASIS 08) (Maryland, USA, 28-30 October 2008)

NASA Astrophysics Data System (ADS)

Lynch, Christopher

2009-10-01

The rapid development of the field of Smart Materials, Adaptive Structures, and Materials Systems led the Aerospace Division ASMS TC to launch the new annual SMASIS conference in 2008. The conference focuses on the multi-disciplinary challenges of developing new multifunctional materials and implementing them in advanced systems. The research spans length scales from nano-structured materials to civil, air, and space structures. The first conference consisted of six symposia, each focusing on a different research area. This special issue of Smart Materials and Structures summarizes some of the top research presented at the 2008 SMASIS conference in the materials-focused symposia. These symposia focused on the behavior and mechanics of active materials, on multifunctional materials, and on bio-inspired materials. The behavior and mechanics of active materials is an approach that combines observed material behavior with mechanism-based models that not only give insight into the observed behavior, but guide the development of new materials. This approach has been applied to shape memory metals and polymers, ferroelectrics, ferromagnetics, and recently to multiferroic materials, and has led to considerable improvements in our understanding of multi-field phenomena. Multifunctional materials are the next generation of active materials. These materials include structural, sensing, and actuation components integrated into a material system. A natural extension of multifunctional materials is a new class of bio-inspired materials. Bio-inspired materials range from detailed bio-mimicry of sensing and self healing materials to nano and microstructures that take advantage of features observed in biological systems. The Editors would like to express their sincere thanks to all of the authors for their contributions to this special issue on 'Adaptive and Active Materials' for Smart Materials and Structures. We convey our gratitude to all of the reviewers for their time and dedication. We thank IOP Publishing for their support and encouragement of this special issue and the staff for their special attention and timely response.

Processing of insulators and semiconductors

DOEpatents

Quick, Nathaniel R.; Joshi, Pooran C.; Duty, Chad Edward; Jellison, Jr., Gerald Earle; Angelini, Joseph Attilio

2015-06-16

A method is disclosed for processing an insulator material or a semiconductor material. The method includes pulsing a plasma lamp onto the material to diffuse a doping substance into the material, to activate the doping substance in the material or to metallize a large area region of the material. The method may further include pulsing a laser onto a selected region of the material to diffuse a doping substance into the material, to activate the doping substance in the material or to metallize a selected region of the material.

Methods and system for controlled laser-driven explosive bonding

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rubenchik, Alexander M.; Farmer, Joseph C.; Hackel, Lloyd

A technique for bonding two dissimilar materials includes positioning a second material over a first material at an oblique angle and applying a tamping layer over the second martial. A laser beam is directed at the second material that generates a plasma at the location of impact on the second material. The plasma generates pressure that accelerates a portion of the second material to a very high velocity and towards the first material. The second material impacts the first material causing bonding of the two materials.

Modeling of materials supply, demand and prices

NASA Technical Reports Server (NTRS)

1982-01-01

The societal, economic, and policy tradeoffs associated with materials processing and utilization, are discussed. The materials system provides the materials engineer with the system analysis required for formulate sound materials processing, utilization, and resource development policies and strategies. Materials system simulation and modeling research program including assessments of materials substitution dynamics, public policy implications, and materials process economics was expanded. This effort includes several collaborative programs with materials engineers, economists, and policy analysts. The technical and socioeconomic issues of materials recycling, input-output analysis, and technological change and productivity are examined. The major thrust areas in materials systems research are outlined.

Transporting particulate material

DOEpatents

Aldred, Derek Leslie [North Hollywood, CA; Rader, Jeffrey A [North Hollywood, CA; Saunders, Timothy W [North Hollywood, CA

2011-08-30

A material transporting system comprises a material transporting apparatus (100) including a material transporting apparatus hopper structure (200, 202), which comprises at least one rotary transporting apparatus; a stationary hub structure (900) constraining and assisting the at least one rotary transporting apparatus; an outlet duct configuration (700) configured to permit material to exit therefrom and comprising at least one diverging portion (702, 702'); an outlet abutment configuration (800) configured to direct material to the outlet duct configuration; an outlet valve assembly from the material transporting system venting the material transporting system; and a moving wall configuration in the material transporting apparatus capable of assisting the material transporting apparatus in transporting material in the material transporting system. Material can be moved from the material transporting apparatus hopper structure to the outlet duct configuration through the at least one rotary transporting apparatus, the outlet abutment configuration, and the outlet valve assembly.

Screening combinatorial arrays of inorganic materials with spectroscopy or microscopy

DOEpatents

Schultz, Peter G.; Xiang, Xiaodong; Goldwasser, Isy

2004-02-03

Methods and apparatus for the preparation and use of a substrate having an array of diverse materials in predefined regions thereon. A substrate having an array of diverse materials thereon is generally prepared by delivering components of materials to predefined regions on a substrate, and simultaneously reacting the components to form at least two materials. Materials which can be prepared using the methods and apparatus of the present invention include, for example, covalent network solids, ionic solids and molecular solids. More particularly, materials which can be prepared using the methods and apparatus of the present invention include, for example, inorganic materials, intermetallic materials, metal alloys, ceramic materials, organic materials, organometallic materials, non-biological organic polymers, composite materials (e.g., inorganic composites, organic composites, or combinations thereof), etc. Once prepared, these materials can be screened for useful properties including, for example, electrical, thermal, mechanical, morphological, optical, magnetic, chemical, or other properties. Thus, the present invention provides methods for the parallel synthesis and analysis of novel materials having useful properties.

Combinatorial synthesis of novel materials

DOEpatents

Schultz, Peter G.; Xiang, Xiaodong; Goldwasser, Isy

1999-01-01

Methods and apparatus for the preparation and use of a substrate having an array of diverse materials in predefined regions thereon. A substrate having an array of diverse materials thereon is generally prepared by delivering components of materials to predefined regions on a substrate, and simultaneously reacting the components to form at least two materials. Materials which can be prepared using the methods and apparatus of the present invention include, for example, covalent network solids, ionic solids and molecular solids. More particularly, materials which can be prepared using the methods and apparatus of the present invention include, for example, inorganic materials, intermetallic materials, metal alloys, ceramic materials, organic materials, organometallic materials, non-biological organic polymers, composite materials (e.g., inorganic composites, organic composites, or combinations thereof), etc. Once prepared, these materials can be screened for useful properties including, for example, electrical, thermal, mechanical, morphological, optical, magnetic, chemical, or other properties. Thus, the present invention provides methods for the parallel synthesis and analysis of novel materials having useful properties.

Combinatorial sythesis of organometallic materials

DOEpatents

Schultz, Peter G.; Xiang, Xiaodong; Goldwasser, Isy

2002-07-16

Methods and apparatus for the preparation and use of a substrate having an array of diverse materials in predefined regions thereon. A substrate having an array of diverse materials thereon is generally prepared by delivering components of materials to predefined regions on a substrate, and simultaneously reacting the components to form at least two materials. Materials which can be prepared using the methods and apparatus of the present invention include, for example, covalent network solids, ionic solids and molecular solids. More particularly, materials which can be prepared using the methods and apparatus of the present invention include, for example, inorganic materials, intermetallic materials, metal alloys, ceramic materials, organic materials, organometallic materials, non-biological organic polymers, composite materials (e.g., inorganic composites, organic composites, or combinations thereof), etc. Once prepared, these materials can be screened for useful properties including, for example, electrical, thermal, mechanical, morphological, optical, magnetic, chemical, or other properties. Thus, the present invention provides methods for the parallel synthesis and analysis of novel materials having useful properties.

Polymer arrays from the combinatorial synthesis of novel materials

DOEpatents

Schultz, Peter G.; Xiang, Xiao-Dong; Goldwasser, Isy; Briceno, Gabriel; Sun, Xiao-Dong

2004-09-21

Methods and apparatus for the preparation and use of a substrate having an array of diverse materials in predefined regions thereon. A substrate having an array of diverse materials thereon is generally prepared by delivering components of materials to predefined regions on a substrate, and simultaneously reacting the components to form at least two materials. Materials which can be prepared using the methods and apparatus of the present invention include, for example, covalent network solids, ionic solids and molecular solids. More particularly, materials which can be prepared using the methods and apparatus of the present invention include, for example, inorganic materials, intermetallic materials, metal alloys, ceramic materials, organic materials, organometallic materials, non-biological organic polymers, composite materials (e.g., inorganic composites, organic composites, or combinations thereof), etc. Once prepared, these materials can be screened for useful properties including, for example, electrical, thermal, mechanical, morphological, optical, magnetic, chemical, or other properties. Thus, the present invention provides methods for the parallel synthesis and analysis of novel materials having useful properties.

Combinatorial synthesis of novel materials

DOEpatents

Schultz, Peter G.; Xiang, Xiaodong; Goldwasser, Isy

2002-02-12

Methods and apparatus for the preparation and use of a substrate having an array of diverse materials in predefined regions thereon. A substrate having an array of diverse materials thereon is generally prepared by delivering components of materials to predefined regions on a substrate, and simultaneously reacting the components to form at least two materials. Materials which can be prepared using the methods and apparatus of the present invention include, for example, covalent network solids, ionic solids and molecular solids. More particularly, materials which can be prepared using the methods and apparatus of the present invention include, for example, inorganic materials, intermetallic materials, metal alloys, ceramic materials, organic materials, organometallic materials, non-biological organic polymers, composite materials (e.g., inorganic composites, organic composites, or combinations thereof), etc. Once prepared, these materials can be screened for useful properties including, for example, electrical, thermal, mechanical, morphological, optical, magnetic, chemical, or other properties. Thus, the present invention provides methods for the parallel synthesis and analysis of novel materials having useful properties.

Preparation and screening of crystalline inorganic materials

DOEpatents

Schultz, Peter G [La Jolla, CA; Xiang, Xiaodong [Danville, CA; Goldwasser, Isy [Palo Alto, CA; Brice{hacek over }o, Gabriel; Sun, Xiao-Dong [Fremont, CA; Wang, Kai-An [Cupertino, CA

2008-10-28

Methods and apparatus for the preparation and use of a substrate having an array of diverse materials in predefined regions thereon. A substrate having an array of diverse materials thereon is generally prepared by delivering components of materials to predefined regions on a substrate, and simultaneously reacting the components to form at least two materials. Materials which can be prepared using the methods and apparatus of the present invention include, for example, covalent network solids, ionic solids and molecular solids. More particularly, materials which can be prepared using the methods and apparatus of the present invention include, for example, inorganic materials, intermetallic materials, metal alloys, ceramic materials, organic materials, organometallic materials, non-biological organic polymers, composite materials (e.g., inorganic composites, organic composites, or combinations thereof), etc. Once prepared, these materials can be screened for useful properties including, for example, electrical, thermal, mechanical, morphological, optical, magnetic, chemical, or other properties. Thus, the present invention provides methods for the parallel synthesis and analysis of novel materials having useful properties.

Combinatorial synthesis of novel materials

DOEpatents

Schultz, Peter G.; Xiang, Xiaodong; Goldwasser, Isy

1999-12-21

Methods and apparatus for the preparation and use of a substrate having an array of diverse materials in predefined regions thereon. A substrate having an array of diverse materials thereon is generally prepared by delivering components of materials to predefined regions on a substrate, and simultaneously reacting the components to form at least two materials. Materials which can be prepared using the methods and apparatus of the present invention include, for example, covalent network solids, ionic solids and molecular solids. More particularly, materials which can be prepared using the methods and apparatus of the present invention include, for example, inorganic materials, intermetallic materials, metal alloys, ceramic materials, organic materials, organometallic materials, non-biological organic polymers, composite materials (e.g., inorganic composites, organic composites, or combinations thereof), etc. Once prepared, these materials can be screened for useful properties including, for example, electrical, thermal, mechanical, morphological, optical, magnetic, chemical, or other properties. Thus, the present invention provides methods for the parallel synthesis and analysis of novel materials having useful properties.

Combinatorial synthesis of novel materials

DOEpatents

Schultz, Peter G.; Xiang, Xiaodong; Goldwasser, Isy

2001-01-01

Methods and apparatus for the preparation and use of a substrate having an array of diverse materials in predefined regions thereon. A substrate having an array of diverse materials thereon is generally prepared by delivering components of materials to predefined regions on a substrate, and simultaneously reacting the components to form at least two materials. Materials which can be prepared using the methods and apparatus of the present invention include, for example, covalent network solids, ionic solids and molecular solids. More particularly, materials which can be prepared using the methods and apparatus of the present invention include, for example, inorganic materials, intermetallic materials, metal alloys, ceramic materials, organic materials, organometallic materials, non-biological organic polymers, composite materials (e.g., inorganic composites, organic composites, or combinations thereof), etc. Once prepared, these materials can be screened for useful properties including, for example, electrical, thermal, mechanical, morphological, optical, magnetic, chemical, or other properties. Thus, the present invention provides methods for the parallel synthesis and analysis of novel materials having useful properties.

Combinatorial screening of inorganic and organometallic materials

DOEpatents

Schultz, Peter G.; Xiang, Xiaodong; Goldwasser, Isy

2002-01-01

Methods and apparatus for the preparation and use of a substrate having an array of diverse materials in predefined regions thereon. A substrate having an array of diverse materials thereon is generally prepared by delivering components of materials to predefined regions on a substrate, and simultaneously reacting the components to form at least two materials. Materials which can be prepared using the methods and apparatus of the present invention include, for example, covalent network solids, ionic solids and molecular solids. More particularly, materials which can be prepared using the methods and apparatus of the present invention include, for example, inorganic materials, intermetallic materials, metal alloys, ceramic materials, organic materials, organometallic materials, non-biological organic polymers, composite materials (e.g., inorganic composites, organic composites, or combinations thereof), etc. Once prepared, these materials can be screened for useful properties including, for example, electrical, thermal, mechanical, morphological, optical, magnetic, chemical, or other properties. Thus, the present invention provides methods for the parallel synthesis and analysis of novel materials having useful properties.

Preparation and screening of crystalline zeolite and hydrothermally-synthesized materials

DOEpatents

Schultz, Peter G.; Xiang, Xiaodong; Goldwasser, Isy; Briceno, Gabriel; Sun, Xiao-Dong; Wang, Kai-An

2005-03-08

Methods and apparatus for the preparation and use of a substrate having an array of diverse materials in predefined regions thereon. A substrate having an array of diverse materials thereon is generally prepared by delivering components of materials to predefined regions on a substrate, and simultaneously reacting the components to form at least two materials. Materials which can be prepared using the methods and apparatus of the present invention include, for example, covalent network solids, ionic solids and molecular solids. More particularly, materials which can be prepared using the methods and apparatus of the present invention include, for example, inorganic materials, intermetallic materials, metal alloys, ceramic materials, organic materials, organometallic materials, non-biological organic polymers, composite materials (e.g., inorganic composites, organic composites, or combinations thereof), etc. Once prepared, these materials can be screened for useful properties including, for example, electrical, thermal, mechanical, morphological, optical, magnetic, chemical, or other properties. Thus, the present invention provides methods for the parallel synthesis and analysis of novel materials having useful properties.

Combinatorial synthesis of inorganic or composite materials

DOEpatents

Goldwasser, Isy; Ross, Debra A.; Schultz, Peter G.; Xiang, Xiao-Dong; Briceno, Gabriel; Sun, Xian-Dong; Wang, Kai-An

2010-08-03

Methods and apparatus for the preparation and use of a substrate having an array of diverse materials in predefined regions thereon. A substrate having an array of diverse materials thereon is generally prepared by delivering components of materials to predefined regions on a substrate, and simultaneously reacting the components to form at least two materials or, alternatively, allowing the components to interact to form at least two different materials. Materials which can be prepared using the methods and apparatus of the present invention include, for example, covalent network solids, ionic solids and molecular solids. More particularly, materials which can be prepared using the methods and apparatus of the present invention include, for example, inorganic materials, intermetallic materials, metal alloys, ceramic materials, organic materials, organometallic materials, nonbiological organic polymers, composite materials (e.g., inorganic composites, organic composites, or combinations thereof), etc. Once prepared, these materials can be screened for useful properties including, for example, electrical, thermal, mechanical, morphological, optical, magnetic, chemical, or other properties. Thus, the present invention provides methods for the parallel synthesis and analysis of novel materials having useful properties.

Ceramic/metal and A15/metal superconducting composite materials exploiting the superconducting proximity effect and method of making the same

DOEpatents

Holcomb, Matthew J.

1999-01-01

A composite superconducting material made of coated particles of ceramic superconducting material and a metal matrix material. The metal matrix material fills the regions between the coated particles. The coating material is a material that is chemically nonreactive with the ceramic. Preferably, it is silver. The coating serves to chemically insulate the ceramic from the metal matrix material. The metal matrix material is a metal that is susceptible to the superconducting proximity effect. Preferably, it is a NbTi alloy. The metal matrix material is induced to become superconducting by the superconducting proximity effect when the temperature of the material goes below the critical temperature of the ceramic. The material has the improved mechanical properties of the metal matrix material. Preferably, the material consists of approximately 10% NbTi, 90% coated ceramic particles (by volume). Certain aspects of the material and method will depend upon the particular ceramic superconductor employed. An alternative embodiment of the invention utilizes A15 compound superconducting particles in a metal matrix material which is preferably a NbTi alloy.

Flexible neural interfaces with integrated stiffening shank

DOEpatents

Tooker, Angela C.; Felix, Sarah H.; Pannu, Satinderpall S.; Shah, Kedar G.; Sheth, Heeral; Tolosa, Vanessa

2016-07-26

A neural interface includes a first dielectric material having at least one first opening for a first electrical conducting material, a first electrical conducting material in the first opening, and at least one first interconnection trace electrical conducting material connected to the first electrical conducting material. A stiffening shank material is located adjacent the first dielectric material, the first electrical conducting material, and the first interconnection trace electrical conducting material.

Phase-change materials handbook

NASA Technical Reports Server (NTRS)

Hale, D. V.; Hoover, M. J.; Oneill, M. J.

1972-01-01

Handbook describes relationship between phase-change materials and more conventional thermal control techniques and discusses materials' space and terrestrial applications. Material properties of most promising phase-change materials and purposes and uses of metallic filler materials in phase-change material composites are provided.

49 CFR 173.459 - Mixing of fissile material packages with non-fissile or fissile-excepted material packages.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 49 Transportation 2 2012-10-01 2012-10-01 false Mixing of fissile material packages with non... (Radioactive) Materials § 173.459 Mixing of fissile material packages with non-fissile or fissile-excepted material packages. Mixing of fissile material packages with other types of Class 7 (radioactive) materials...

49 CFR 173.459 - Mixing of fissile material packages with non-fissile or fissile-excepted material packages.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 49 Transportation 2 2013-10-01 2013-10-01 false Mixing of fissile material packages with non... (Radioactive) Materials § 173.459 Mixing of fissile material packages with non-fissile or fissile-excepted material packages. Mixing of fissile material packages with other types of Class 7 (radioactive) materials...

49 CFR 173.459 - Mixing of fissile material packages with non-fissile or fissile-excepted material packages.

Code of Federal Regulations, 2011 CFR

2011-10-01

... 49 Transportation 2 2011-10-01 2011-10-01 false Mixing of fissile material packages with non... (Radioactive) Materials § 173.459 Mixing of fissile material packages with non-fissile or fissile-excepted material packages. Mixing of fissile material packages with other types of Class 7 (radioactive) materials...

49 CFR 173.459 - Mixing of fissile material packages with non-fissile or fissile-excepted material packages.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 49 Transportation 2 2010-10-01 2010-10-01 false Mixing of fissile material packages with non... (Radioactive) Materials § 173.459 Mixing of fissile material packages with non-fissile or fissile-excepted material packages. Mixing of fissile material packages with other types of Class 7 (radioactive) materials...

49 CFR 173.459 - Mixing of fissile material packages with non-fissile or fissile-excepted material packages.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 49 Transportation 2 2014-10-01 2014-10-01 false Mixing of fissile material packages with non... (Radioactive) Materials § 173.459 Mixing of fissile material packages with non-fissile or fissile-excepted material packages. Mixing of fissile material packages with other types of Class 7 (radioactive) materials...

10 CFR 35.1000 - Other medical uses of byproduct material or radiation from byproduct material.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 10 Energy 1 2014-01-01 2014-01-01 false Other medical uses of byproduct material or radiation from... MATERIAL Other Medical Uses of Byproduct Material or Radiation From Byproduct Material § 35.1000 Other medical uses of byproduct material or radiation from byproduct material. A licensee may use byproduct...

10 CFR 35.1000 - Other medical uses of byproduct material or radiation from byproduct material.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 10 Energy 1 2010-01-01 2010-01-01 false Other medical uses of byproduct material or radiation from... MATERIAL Other Medical Uses of Byproduct Material or Radiation From Byproduct Material § 35.1000 Other medical uses of byproduct material or radiation from byproduct material. A licensee may use byproduct...

10 CFR 35.1000 - Other medical uses of byproduct material or radiation from byproduct material.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 10 Energy 1 2013-01-01 2013-01-01 false Other medical uses of byproduct material or radiation from... MATERIAL Other Medical Uses of Byproduct Material or Radiation From Byproduct Material § 35.1000 Other medical uses of byproduct material or radiation from byproduct material. A licensee may use byproduct...

10 CFR 35.1000 - Other medical uses of byproduct material or radiation from byproduct material.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 10 Energy 1 2012-01-01 2012-01-01 false Other medical uses of byproduct material or radiation from... MATERIAL Other Medical Uses of Byproduct Material or Radiation From Byproduct Material § 35.1000 Other medical uses of byproduct material or radiation from byproduct material. A licensee may use byproduct...

10 CFR 35.1000 - Other medical uses of byproduct material or radiation from byproduct material.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 10 Energy 1 2011-01-01 2011-01-01 false Other medical uses of byproduct material or radiation from... MATERIAL Other Medical Uses of Byproduct Material or Radiation From Byproduct Material § 35.1000 Other medical uses of byproduct material or radiation from byproduct material. A licensee may use byproduct...

Commentary: The Materials Project: A materials genome approach to accelerating materials innovation

NASA Astrophysics Data System (ADS)

Jain, Anubhav; Ong, Shyue Ping; Hautier, Geoffroy; Chen, Wei; Richards, William Davidson; Dacek, Stephen; Cholia, Shreyas; Gunter, Dan; Skinner, David; Ceder, Gerbrand; Persson, Kristin A.

2013-07-01

Accelerating the discovery of advanced materials is essential for human welfare and sustainable, clean energy. In this paper, we introduce the Materials Project (www.materialsproject.org), a core program of the Materials Genome Initiative that uses high-throughput computing to uncover the properties of all known inorganic materials. This open dataset can be accessed through multiple channels for both interactive exploration and data mining. The Materials Project also seeks to create open-source platforms for developing robust, sophisticated materials analyses. Future efforts will enable users to perform ``rapid-prototyping'' of new materials in silico, and provide researchers with new avenues for cost-effective, data-driven materials design.

Materials @ LANL: Solutions for National Security Challenges

NASA Astrophysics Data System (ADS)

Teter, David

2012-10-01

Materials science activities impact many programmatic missions at LANL including nuclear weapons, nuclear energy, renewable energy, global security and nonproliferation. An overview of the LANL materials science strategy and examples of materials science programs will be presented. Major materials leadership areas are in materials dynamics, actinides and correlated electron materials, materials in radiation extremes, energetic materials, integrated nanomaterials and complex functional materials. Los Alamos is also planning a large-scale, signature science facility called MaRIE (Matter Radiation Interactions in Extremes) to address in-situ characterization of materials in dynamic and radiation environments using multiple high energy probes. An overview of this facility will also be presented.

Advanced Materials for Exploration Task Research Results

NASA Technical Reports Server (NTRS)

Cook, M. B. (Compiler); Murphy, K. L.; Schneider, T.

2008-01-01

The Advanced Materials for Exploration (AME) Activity in Marshall Space Flight Center s (MSFC s) Exploration Science and Technology Directorate coordinated activities from 2001 to 2006 to support in-space propulsion technologies for future missions. Working together, materials scientists and mission planners identified materials shortfalls that are limiting the performance of long-term missions. The goal of the AME project was to deliver improved materials in targeted areas to meet technology development milestones of NASA s exploration-dedicated activities. Materials research tasks were targeted in five areas: (1) Thermal management materials, (2) propulsion materials, (3) materials characterization, (4) vehicle health monitoring materials, and (5) structural materials. Selected tasks were scheduled for completion such that these new materials could be incorporated into customer development plans.

Armor systems including coated core materials

DOEpatents

Chu, Henry S [Idaho Falls, ID; Lillo, Thomas M [Idaho Falls, ID; McHugh, Kevin M [Idaho Falls, ID

2012-07-31

An armor system and method involves providing a core material and a stream of atomized coating material that comprises a liquid fraction and a solid fraction. An initial layer is deposited on the core material by positioning the core material in the stream of atomized coating material wherein the solid fraction of the stream of atomized coating material is less than the liquid fraction of the stream of atomized coating material on a weight basis. An outer layer is then deposited on the initial layer by positioning the core material in the stream of atomized coating material wherein the solid fraction of the stream of atomized coating material is greater than the liquid fraction of the stream of atomized coating material on a weight basis.

Armor systems including coated core materials

DOEpatents

Chu, Henry S; Lillo, Thomas M; McHugh, Kevin M

2013-10-08

An armor system and method involves providing a core material and a stream of atomized coating material that comprises a liquid fraction and a solid fraction. An initial layer is deposited on the core material by positioning the core material in the stream of atomized coating material wherein the solid fraction of the stream of atomized coating material is less than the liquid fraction of the stream of atomized coating material on a weight basis. An outer layer is then deposited on the initial layer by positioning the core material in the stream of atomized coating material wherein the solid fraction of the stream of atomized coating material is greater than the liquid fraction of the stream of atomized coating material on a weight basis.

Catalyst material and method of making

DOEpatents

Matson, Dean W.; Fulton, John L.; Linehan, John C.; Bean, Roger M.; Brewer, Thomas D.; Werpy, Todd A.; Darab, John G.

1997-01-01

The material of the present invention is a mixture of catalytically active material and carrier materials, which may be catalytically active themselves. Hence, the material of the present invention provides a catalyst particle that has catalytically active material throughout its bulk volume as well as on its surface. The presence of the catalytically active material throughout the bulk volume is achieved by chemical combination of catalytically active materials with carrier materials prior to or simultaneously with crystallite formation.

Catalyst material and method of making

DOEpatents

Matson, D.W.; Fulton, J.L.; Linehan, J.C.; Bean, R.M.; Brewer, T.D.; Werpy, T.A.; Darab, J.G.

1997-07-29

The material of the present invention is a mixture of catalytically active material and carrier materials, which may be catalytically active themselves. Hence, the material of the present invention provides a catalyst particle that has catalytically active material throughout its bulk volume as well as on its surface. The presence of the catalytically active material throughout the bulk volume is achieved by chemical combination of catalytically active materials with carrier materials prior to or simultaneously with crystallite formation. 7 figs.

Material efficiency in a multi-material world.

PubMed

Lifset, Reid; Eckelman, Matthew

2013-03-13

Material efficiency--using less of a material to make a product or supply a service--is gaining attention as a means for accomplishing important environmental goals. The ultimate goal of material efficiency is not to use less physical material but to reduce the impacts associated with its use. This article examines the concept and definition of material efficiency and argues that for it to be an effective strategy it must confront the challenges of operating in a multi-material world, providing guidance when materials are used together and when they compete. A series of conceptions of material efficiency are described, starting with mass-based formulations and expanding to consider multiple resources in the supply chain of a single material, and then to multiple resources in the supply chains of multiple materials used together, and further to multiple environmental impacts. The conception of material efficiency is further broadened by considering material choice, exploring the technical and economic effects both of using less material and of materials competition. Finally, this entire materials-based techno-economic system is considered with respect to the impact of complex policies and political forces. The overall goal here is to show how the concept of material efficiency when faced with more expansive--and yet directly relevant--definitional boundaries is forced to confront analytical challenges that are both familiar and difficult in life cycle assessment and product-based approaches.

Diagnostic system for profiling micro-beams

DOEpatents

Elmer, John W.; Palmer, Todd A.; Teruya, Alan T.; Walton, Chris C.

2007-10-30

An apparatus for characterization of a micro beam comprising a micro modified Faraday cup assembly including a first layer of material, a second layer of material operatively connected to the first layer of material, a third layer of material operatively connected to the second layer of material, and a fourth layer of material operatively connected to the third layer of material. The first layer of material comprises an electrical conducting material and has at least one first layer radial slit extending through the first layer. An electrical ground is connected to the first layer. The second layer of material comprises an insulating material and has at least one second layer radial slit corresponding to the first layer radial slit in the first layer of material. The second layer radial slit extends through the second layer. The third layer of material comprises a conducting material and has at least one third layer radial slit corresponding to the second layer radial slit in the second layer of material. The third layer radial slit extends through the third layer. The fourth layer of material comprises an electrical conducting material but does not have slits. An electrical measuring device is connected to the fourth layer. The micro modified Faraday cup assembly is positioned to be swept by the micro beam.

Lightweight Combat Vehicle S and T Campaign

DTIC Science & Technology

2014-10-06

research in nano-materials, self - healing /diagnosing materials, multi-functional materials, and environmentally acceptable materials. The application...research includes nano-materials, self - healing /diagnosing materials, multi-functional materials, and environmentally acceptable materials.5 The 2003...hubs must be led by a not-for-profit organization, provide 50% cost share match, and are expected to become self -sufficient in 5 years. So far, all

NASA LaRC Hazardous Material Pharmacy

NASA Technical Reports Server (NTRS)

Esquenet, Remy

1995-01-01

In 1993-1994 the Office of Environmental Engineering contracted SAIC to develop NASA Langley's Pollution Prevention (P2) Program. One of the priority projects identified in this contract was the development of a hazardous waste minimization (HAZMIN)/hazardous materials reutilization (HAZMART) program in the form of a Hazardous Materials Pharmacy. A hazardous materials pharmacy is designed to reduce hazardous material procurement costs and hazardous waste disposal costs. This is accomplished through the collection and reissue of excess hazardous material. Currently, a rarely used hazardous material may be stored in a shop area, unused, until it passes its expiration date. The material is then usually disposed of as a hazardous waste, often at a greater expense than the original cost of the material. While this material was on the shelf expiring, other shop areas may have ordered new supplies of the same material. The hazardous material pharmacy would act as a clearinghouse for such materials. Material that is not going to be used would be turned in to the pharmacy. Other users could then be issued this material free of charge, thereby reducing procurement costs. The use of this material by another shop prevents it from expiring, thereby reducing hazardous waste disposal costs.

49 CFR 178.345-2 - Material and material thickness.

Code of Federal Regulations, 2011 CFR

2011-10-01

... 49 Transportation 3 2011-10-01 2011-10-01 false Material and material thickness. 178.345-2 Section... HAZARDOUS MATERIALS SAFETY ADMINISTRATION, DEPARTMENT OF TRANSPORTATION (CONTINUED) SPECIFICATIONS FOR PACKAGINGS Specifications for Containers for Motor Vehicle Transportation § 178.345-2 Material and material...

48 CFR 52.211-5 - Material Requirements.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 48 Federal Acquisition Regulations System 2 2012-10-01 2012-10-01 false Material Requirements. 52....211-5 Material Requirements. As prescribed in 11.304, insert the following clause: Material... components, whether manufactured from virgin material, recovered material in the form of raw material, or...

48 CFR 52.211-5 - Material Requirements.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 48 Federal Acquisition Regulations System 2 2014-10-01 2014-10-01 false Material Requirements. 52....211-5 Material Requirements. As prescribed in 11.304, insert the following clause: Material... components, whether manufactured from virgin material, recovered material in the form of raw material, or...

49 CFR 178.345-2 - Material and material thickness.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 49 Transportation 3 2014-10-01 2014-10-01 false Material and material thickness. 178.345-2 Section... HAZARDOUS MATERIALS SAFETY ADMINISTRATION, DEPARTMENT OF TRANSPORTATION (CONTINUED) SPECIFICATIONS FOR PACKAGINGS Specifications for Containers for Motor Vehicle Transportation § 178.345-2 Material and material...

49 CFR 178.345-2 - Material and material thickness.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 49 Transportation 3 2012-10-01 2012-10-01 false Material and material thickness. 178.345-2 Section... HAZARDOUS MATERIALS SAFETY ADMINISTRATION, DEPARTMENT OF TRANSPORTATION (CONTINUED) SPECIFICATIONS FOR PACKAGINGS Specifications for Containers for Motor Vehicle Transportation § 178.345-2 Material and material...

49 CFR 178.345-2 - Material and material thickness.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 49 Transportation 3 2013-10-01 2013-10-01 false Material and material thickness. 178.345-2 Section... HAZARDOUS MATERIALS SAFETY ADMINISTRATION, DEPARTMENT OF TRANSPORTATION (CONTINUED) SPECIFICATIONS FOR PACKAGINGS Specifications for Containers for Motor Vehicle Transportation § 178.345-2 Material and material...

Combinatorial synthesis and screening of non-biological polymers

DOEpatents

Schultz, Peter G.; Xiang, Xiao-Dong; Goldwasser, Isy; Briceno, Gabriel; Sun, Xiao-Dong; Wang, Kai-An

2006-04-25

Methods and apparatus for the preparation and use of a substrate having an array of diverse materials in predefined regions thereon. A substrate having an array of diverse materials thereon is generally prepared by delivering components of materials to predefined regions on a substrate, and simultaneously reacting the components to form at least two materials. Materials which can be prepared using the methods and apparatus of the present invention include, for example, covalent network solids, ionic solids and molecular solids. More particularly, materials which can be prepared using the methods and apparatus of the present invention include, for example, inorganic materials, intermetallic materials, metal alloys, ceramic materials, organic materials, organometallic materials, non-biological organic polymers, composite materials (e.g., inorganic composites, organic composites, or combinations thereof), etc. Once prepared, these materials can be screened for useful properties including, for example, electrical, thermal, mechanical, morphological, optical, magnetic, chemical, or other properties. Thus, the present invention provides methods for the parallel synthesis and analysis of novel materials having useful properties.

Giant magnetoresistive cobalt oxide compounds

DOEpatents

Schultz, Peter G.; Xiang, Xiaodong; Goldwasser, Isy

1998-01-01

Methods and apparatus for the preparation and use of a substrate having an array of diverse materials in predefined regions thereon. A substrate having an array of diverse materials thereon is generally prepared by delivering components of materials to predefined regions on a substrate, and simultaneously reacting the components to form at least two materials. Materials which can be prepared using the methods and apparatus of the present invention include, for example, covalent network solids, ionic solids and molecular solids. More particularly, materials which can be prepared using the methods and apparatus of the present invention include, for example, inorganic materials, intermetallic materials, metal alloys, ceramic materials, organic materials, organometallic materials, non-biological organic polymers, composite materials (e.g., inorganic composites, organic composites, or combinations thereof), etc. Once prepared, these materials can be screened for useful properties including, for example, electrical, thermal, mechanical, morphological, optical, magnetic, chemical, or other properties. Thus, the present invention provides methods for the parallel synthesis and analysis of novel materials having useful properties.

Giant magnetoresistive cobalt oxide compounds

DOEpatents

Schultz, P.G.; Xiang, X.; Goldwasser, I.

1998-07-07

Methods and apparatus are disclosed for the preparation and use of a substrate having an array of diverse materials in predefined regions thereon. A substrate having an array of diverse materials thereon is generally prepared by delivering components of materials to predefined regions on a substrate, and simultaneously reacting the components to form at least two materials. Materials which can be prepared using the methods and apparatus of the present invention include, for example, covalent network solids, ionic solids and molecular solids. More particularly, materials which can be prepared using the methods and apparatus of the present invention include, for example, inorganic materials, intermetallic materials, metal alloys, ceramic materials, organic materials, organometallic materials, non-biological organic polymers, composite materials (e.g., inorganic composites, organic composites, or combinations thereof), etc. Once prepared, these materials can be screened for useful properties including, for example, electrical, thermal, mechanical, morphological, optical, magnetic, chemical, or other properties. Thus, the present invention provides methods for the parallel synthesis and analysis of novel materials having useful properties. 58 figs.

Synthesis and screening combinatorial arrays of zeolites

DOEpatents

Schultz, Peter G.; Xiang, Xiaodong; Goldwasser, Isy

2003-11-18

Methods and apparatus for the preparation and use of a substrate having an array of diverse materials in predefined regions thereon. A substrate having an array of diverse materials thereon is generally prepared by delivering components of materials to predefined regions on a substrate, and simultaneously reacting the components to form at least two materials. Materials which can be prepared using the methods and apparatus of the present invention include, for example, covalent network solids, ionic solids and molecular solids. More particularly, materials which can be prepared using the methods and apparatus of the present invention include, for example, inorganic materials, intermetallic materials, metal alloys, ceramic materials, organic materials, organometallic materials, non-biological organic polymers, composite materials (e.g., inorganic composites, organic composites, or combinations thereof), etc. Once prepared, these materials can be screened for useful properties including, for example, electrical, thermal, mechanical, morphological, optical, magnetic, chemical, or other properties. Thus, the present invention provides methods for the parallel synthesis and analysis of novel materials having useful properties.

Combinatorial and high-throughput screening of materials libraries: review of state of the art.

PubMed

Potyrailo, Radislav; Rajan, Krishna; Stoewe, Klaus; Takeuchi, Ichiro; Chisholm, Bret; Lam, Hubert

2011-11-14

Rational materials design based on prior knowledge is attractive because it promises to avoid time-consuming synthesis and testing of numerous materials candidates. However with the increase of complexity of materials, the scientific ability for the rational materials design becomes progressively limited. As a result of this complexity, combinatorial and high-throughput (CHT) experimentation in materials science has been recognized as a new scientific approach to generate new knowledge. This review demonstrates the broad applicability of CHT experimentation technologies in discovery and optimization of new materials. We discuss general principles of CHT materials screening, followed by the detailed discussion of high-throughput materials characterization approaches, advances in data analysis/mining, and new materials developments facilitated by CHT experimentation. We critically analyze results of materials development in the areas most impacted by the CHT approaches, such as catalysis, electronic and functional materials, polymer-based industrial coatings, sensing materials, and biomaterials.

Systems and methods for treating material

DOE Office of Scientific and Technical Information (OSTI.GOV)

Scheele, Randall D; McNamara, Bruce K

Systems for treating material are provided that can include a vessel defining a volume, at least one conduit coupled to the vessel and in fluid communication with the vessel, material within the vessel, and NF.sub.3 material within the conduit. Methods for fluorinating material are provided that can include exposing the material to NF.sub.3 to fluorinate at least a portion of the material. Methods for separating components of material are also provided that can include exposing the material to NF.sub.3 to at least partially fluorinate a portion of the material, and separating at least one fluorinated component of the fluorinated portionmore » from the material. The materials exposed to the NF.sub.3 material can include but are not limited to one or more of U, Ru, Rh, Mo, Tc, Np, Pu, Sb, Ag, Am, Sn, Zr, Cs, Th, and/or Rb.« less

Methods of using structures including catalytic materials disposed within porous zeolite materials to synthesize hydrocarbons

DOEpatents

Rollins, Harry W [Idaho Falls, ID; Petkovic, Lucia M [Idaho Falls, ID; Ginosar, Daniel M [Idaho Falls, ID

2011-02-01

Catalytic structures include a catalytic material disposed within a zeolite material. The catalytic material may be capable of catalyzing a formation of methanol from carbon monoxide and/or carbon dioxide, and the zeolite material may be capable of catalyzing a formation of hydrocarbon molecules from methanol. The catalytic material may include copper and zinc oxide. The zeolite material may include a first plurality of pores substantially defined by a crystal structure of the zeolite material and a second plurality of pores dispersed throughout the zeolite material. Systems for synthesizing hydrocarbon molecules also include catalytic structures. Methods for synthesizing hydrocarbon molecules include contacting hydrogen and at least one of carbon monoxide and carbon dioxide with such catalytic structures. Catalytic structures are fabricated by forming a zeolite material at least partially around a template structure, removing the template structure, and introducing a catalytic material into the zeolite material.

Stratigraphy of the Perrine and Nun Sulci quadrangles (Jg-2 and Jg-5), Ganymede

NASA Technical Reports Server (NTRS)

Mcgill, George E.; Squyres, Steven W.

1991-01-01

Dark and light terrain materials in the Perrine and Nun Sulci quadrangles are divided into nine map units, four dark, and five light. These are placed in time-stratigraphic sequence primarily by means of embayment and cross-cutting relationships. Dark terrain is generally more heavily cratered and thus older that light terrain but, at least in these quadrangles, crater densities are not reliable indicators of relative ages among the four dark material units. The four mapped material units within dark terrain are: cratered dark materials (dc), grooved dark materials (dg), transitional dark materials (di), and dark materials, undivided (d). The five mapped units within light terrain are: intermediate light materials (li), grooved light materials (lg), irregularly grooved light materials (lgl), smooth light materials (ls), and light materials, undivided.

Polymeric membrane materials for artificial organs.

PubMed

Kawakami, Hiroyoshi

2008-01-01

Many polymeric materials have already been used in the field of artificial organs. However, the materials used in artificial organs are not necessarily created with the best material selectivity and materials design; therefore, the development of synthesized polymeric membrane materials for artificial organs based on well-defined designs is required. The approaches to the development of biocompatible polymeric materials fall into three categories: (1) control of physicochemical characteristics on material surfaces, (2) modification of material surfaces using biomolecules, and (3) construction of biomimetic membrane surfaces. This review will describe current issues regarding polymeric membrane materials for use in artificial organs.

Approximate static condensation algorithm for solving multi-material diffusion problems on meshes non-aligned with material interfaces

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kikinzon, Evgeny; Kuznetsov, Yuri; Lipnikov, Konstatin

In this study, we describe a new algorithm for solving multi-material diffusion problem when material interfaces are not aligned with the mesh. In this case interface reconstruction methods are used to construct approximate representation of interfaces between materials. They produce so-called multi-material cells, in which materials are represented by material polygons that contain only one material. The reconstructed interface is not continuous between cells. Finally, we suggest the new method for solving multi-material diffusion problems on such meshes and compare its performance with known homogenization methods.

Approximate static condensation algorithm for solving multi-material diffusion problems on meshes non-aligned with material interfaces

DOE PAGES

Kikinzon, Evgeny; Kuznetsov, Yuri; Lipnikov, Konstatin; ...

2017-07-08

In this study, we describe a new algorithm for solving multi-material diffusion problem when material interfaces are not aligned with the mesh. In this case interface reconstruction methods are used to construct approximate representation of interfaces between materials. They produce so-called multi-material cells, in which materials are represented by material polygons that contain only one material. The reconstructed interface is not continuous between cells. Finally, we suggest the new method for solving multi-material diffusion problems on such meshes and compare its performance with known homogenization methods.

Space Exploration: Oh, the Materials You'll Need!

NASA Technical Reports Server (NTRS)

Johnson, Sylvia M.

2016-01-01

Space exploration has many challenges and materials are critical for many of the systems required to enable robotic or human space exploration. This talk will highlight challenges for materials with an emphasis on thermal protection materials and systems. Solving the materials issues will require thinking about materials in the systems and environments where are they to be used. In many cases the materials must be designed for the application, and the system needs to be designed with the materials in mind. The talk will conclude with some thoughts on the skills needed for materials scientists and engineers working on materials for space.

Opening Comments: SciDAC 2008

NASA Astrophysics Data System (ADS)

Strayer, Michael

2008-07-01

Welcome to Seattle and the 2008 SciDAC Conference. This conference, the fourth in the series, is a continuation of the PI meetings we first began under SciDAC-1. I would like to start by thanking the organizing committee, and Rick Stevens in particular, for organizing this year's meeting. This morning I would like to look briefly at SciDAC, to give you a brief history of SciDAC and also look ahead to see where we plan to go over the next few years. I think the best description of SciDAC, at least the simulation part, comes from a quote from Dr Ray Orbach, DOE's Under Secretary for Science and Director of the Office of Science. In an interview that appeared in the SciDAC Review magazine, Dr Orbach said, `SciDAC is unique in the world. There isn't any other program like it anywhere else, and it has the remarkable ability to do science by bringing together physical scientists, mathematicians, applied mathematicians, and computer scientists who recognize that computation is not something you do at the end, but rather it needs to be built into the solution of the very problem that one is addressing'. Of course, that is extended not just to physical scientists, but also to biological scientists. This is a theme of computational science, this partnership among disciplines, which goes all the way back to the early 1980s and Ken Wilson. It's a unique thread within the Department of Energy. SciDAC-1, launched around the turn of the millennium, created a new generation of scientific simulation codes. It advocated building out mathematical and computing system software in support of science and a new collaboratory software environment for data. The original concept for SciDAC-1 had topical centers for the execution of the various science codes, but several corrections and adjustments were needed. The ASCR scientific computing infrastructure was also upgraded, providing the hardware facilities for the program. The computing facility that we had at that time was the big 3 teraflop/s center at NERSC and that had to be shared with the programmatic side supporting research across DOE. At the time, ESnet was just slightly over half a gig per sec of bandwidth; and the science being addressed was accelerator science, climate, chemistry, fusion, astrophysics, materials science, and QCD. We built out the national collaboratories from the ASCR office, and in addition we built Integrated Software Infrastructure Centers (ISICs). Of these, three were in applied mathematics, four in computer science (including a performance evaluation research center), and four were collaboratories or Grid projects having to do with data management. For science, there were remarkable breakthroughs in simulation, such as full 3D laboratory scale flame simulation. There were also significant improvements in application codes - from factors of almost 3 to more than 100 - and code improvement as people began to realize they had to integrate mathematics tools and computer science tools into their codes to take advantage of the parallelism of the day. The SciDAC data-mining tool, Sapphire, received a 2006 R&D 100 award. And the community as a whole worked well together and began building a publication record that was substantial. In 2006, we recompeted the program with similar goals - SciDAC-1 was very successful, and we wanted to continue that success and extend what was happening under SciDAC to the broader science community. We opened up the partnership to all of the Offices of Science and the NSF and the NNSA. The goal was to create comprehensive scientific computing software and the infrastructure for the software to enable scientific discovery in the physical, biological, and environmental sciences and take the simulations to an extreme scale, in this case petascale. We would also build out a new generation of data management tools. What we observed during SciDAC-1 was that the data and the data communities - both experimental data from large experimental facilities and observational data, along with simulation data - were expanding at a rate significantly faster than Moore's law. In the past few weeks, the FastBit indexing technology software tool for data analyses and data mining developed under SciDAC's Scientific Data Management project was recognized with an R&D 100 Award, selected by an independent judging panel and editors of R&D Magazine as one of the 100 most technologically significant products introduced into the marketplace over the past year. For SciDAC-2 we had nearly 250 proposals requesting a total of slightly over 1 billion in funding. Of course, we had nowhere near 1 billion. The facilities and the science we ended up with were not significantly different from what we had in SciDAC-1. But we had put in place substantially increased facilities for science. When SciDAC-1 was originally executed with the facilities at NERSC, there was significant impact on the resources at NERSC, because not only did we have an expanding portfolio of programmatic science, but we had the SciDAC projects that also needed to run at NERSC. Suddenly, NERSC was incredibly oversubscribed. With SciDAC-2, we had in place leadership-class computing facilities at Argonne with slightly more than half a petaflop and at Oak Ridge with slightly more than a quarter petaflop with an upgrade planned at the end of this year for a petaflop. And we increased the production computing capacity at NERSC to 104 teraflop/s just so that we would not impact the programmatic research and so that we would have a startup facility for SciDAC. At the end of the summer, NERSC will be at 360 teraflop/s. Both the Oak Ridge system and the principal resource at NERSC are Cray systems; Argonne has a different architecture, an IBM Blue Gene/P. At the same time, ESnet has been built out, and we are on a path where we will have dual rings around the country, from 10 to 40 gigabits per second - a factor of 20 to 80 over what was available during SciDAC-1. The science areas include accelerator science and simulation, astrophysics, climate modeling and simulation, computational biology, fusion science, high-energy physics, petabyte high-energy/ nuclear physics, materials science and chemistry, nuclear physics, QCD, radiation transport, turbulence, and groundwater reactive transport modeling and simulation. They were supported by new enabling technology centers and university-based institutes to develop an educational thread for the SciDAC program. There were four mathematics projects and four computer science projects; and under data management, we see a significant difference in that we are bringing up new visualization projects to support and sustain data-intensive science. When we look at the budgets, we see growth in the budget from just under 60 million for SciDAC-1 to just over 80 for SciDAC-2. Part of the growth is due to bringing in NSF and NNSA as new partners, and some of the growth is due to some program offices increasing their investment in SciDAC, while other program offices are constant or have decreased their investment. This is not a reflection of their priorities per se but, rather, a reflection of the budget process and the difficult times in Washington during the past two years. New activities are under way in SciDAC - the annual PI meeting has turned into what I would describe as the premier interdisciplinary computational science meeting, one of the best in the world. Doing interdisciplinary meetings is difficult because people tend to develop a focus for their particular subject area. But this is the fourth in the series; and since the first meeting in San Francisco, these conferences have been remarkably successful. For SciDAC-2 we also created an outreach magazine, SciDAC Review, which highlights scientific discovery as well as high-performance computing. It's been very successful in telling the non-practitioners what SciDAC and computational science are all about. The other new instrument in SciDAC-2 is an outreach center. As we go from computing at the terascale to computing at the petascale, we face the problem of narrowing our research community. The number of people who are `literate' enough to compute at the terascale is more than the number of those who can compute at the petascale. To address this problem, we established the SciDAC Outreach Center to bring people into the fold and educate them as to how we do SciDAC, how the teams are composed, and what it really means to compute at scale. The resources I have mentioned don't come for free. As part of the HECRTF law of 2005, Congress mandated that the Secretary would ensure that leadership-class facilities would be open to everyone across all agencies. So we took Congress at its word, and INCITE is our instrument for making allocations at the leadership-class facilities at Argonne and Oak Ridge, as well as smaller allocations at NERSC. Therefore, the selected proposals are very large projects that are computationally intensive, that compute at scale, and that have a high science impact. An important feature is that INCITE is completely open to anyone - there is no requirement of DOE Office of Science funding, and proposals are rigorously reviewed for both the science and the computational readiness. In 2008, more than 100 proposals were received, requesting about 600 million processor-hours. We allocated just over a quarter of a billion processor-hours. Astrophysics, materials science, lattice gauge theory, and high energy and nuclear physics were the major areas. These were the teams that were computationally ready for the big machines and that had significant science they could identify. In 2009, there will be a significant increase amount of time to be allocated, over half a billion processor-hours. The deadline is August 11 for new proposals and September 12 for renewals. We anticipate a significant increase in the number of requests this year. We expect you - as successful SciDAC centers, institutes, or partnerships - to compete for and win INCITE program allocation awards. If you have a successful SciDAC proposal, we believe it will make you successful in the INCITE review. We have the expectation that you will among those most prepared and most ready to use the machines and to compute at scale. Over the past 18 months, we have assembled a team to look across our computational science portfolio and to judge what are the 10 most significant science accomplishments. The ASCR office, as it goes forward with OMB, the new administration, and Congress, will be judged by the science we have accomplished. All of our proposals - such as for increasing SciDAC, increasing applied mathematics, and so on - are tied to what have we accomplished in science. And so these 10 big accomplishments are key to establishing credibility for new budget requests. Tony Mezzacappa, who chaired the committee, will also give a presentation on the ranking of these top 10, how they got there, and what the science is all about. Here is the list - numbers 2, 5, 6, 7, 9, and 10 are all SciDAC projects. RankTitle 1Modeling the Molecular Basis of Parkinson's Disease (Tsigelny) 2Discovery of the Standing Accretion Shock Instability and Pulsar Birth Mechanism in a Core-Collapse Supernova Evolution and Explosion (Blondin) 3Prediction and Design of Macromolecular Structures and Functions (Baker) 4Understanding How Lifted Flame Stabilized in a Hot Coflow (Yoo) 5New Insights from LCF-enabled Advanced Kinetic Simulations of Global Turbulence in Fusion Systems (Tang) 6High Transition Temperature Superconductivity: A High-Temperature Superconductive State and a Pairing Mechanism in 2-D Hubbard Model (Scalapino) 7 PETsc: Providing the Solvers for DOE High-Performance Simulations (Smith) 8 Via Lactea II, A Billion Particle Simulation of the Dark Matter Halo of the Milky Way (Madau) 9Probing the Properties of Water through Advanced Computing (Galli) 10First Provably Scalable Maxwell Solver Enables Scalable Electromagnetic Simulations (Kovel) So, what's the future going to look like for us? The office is putting together an initiative with the community, which we call the E3 Initiative. We're looking for a 10-year horizon for what's going to happen. Through the series of town hall meetings, which many of you participated in, we have produced a document on `Transforming Energy, the Environment and Science through simulations at the eXtreme Scale'; it can be found at http://www.science.doe.gov/ascr/ProgramDocuments/TownHall.pdf . We sometimes call it the Exascale initiative. Exascale computing is the gold-ring level of computing that seems just out of reach; but if we work hard and stretch, we just might be able to reach it. We envision that there will be a SciDAC-X, working at the extreme scale, with SciDAC teams that will perform and carry out science in the areas that will have a great societal impact, such as alternative fuels and transportation, combustion, climate, fusion science, high-energy physics, advanced fuel cycles, carbon management, and groundwater. We envision institutes for applied mathematics and computer science that probably will segue into algorithms because, at the extreme scale, we see the distinction between the applied math and the algorithm per se and its implementation in computer science as being inseparable. We envision an INCITE-X with multi-petaflop platforms, perhaps even exaflop computing resources. ESnet will be best in class - our 10-year plan calls for having 400 terabits per second capacity available in dual rings around the country, an enormously fast data communications network for moving large amounts of data. In looking at where we've been and where we are going, we can see that the gigaflops and teraflops era was a regime where we were following Moore's law through advances in clock speed. In the current regime, we're introducing massive parallelism, which I think is exemplified by Intel's announcement of their teraflop chip, where they envision more than a thousand cores on a chip. But in order to reach exascale, extrapolations talk about machines that require 100 megawatts of power in terms of current architectures. It's clearly going to require novel architectures, things we have perhaps not yet envisioned. It is of course an era of challenge. There will be an unpredictable evolution of hardware if we are to reach the exascale; and there will clearly be multilevel heterogeneous parallelism, including multilevel memory hierarchies. We have no idea right now as to the programming models needed to execute at such an extreme scale. We have been incredibly successful at the petascale - we know that already. Managing data and just getting communications to scale is an enormous challenge. And it's not just the extreme scaling. It's the rapid increase in complexity that represents the challenge. Let me end with a metaphor. In previous meetings we have talked about the road to petascale. Indeed, we have seen in hindsight that it was a road well traveled. But perhaps the road to exascale is not a road at all. Perhaps the metaphor will be akin to scaling the south face of K2. That's clearly not something all of us will be able to do, and probably computing at the exascale is not something all of us will do. But if we achieve that goal, perhaps the words of Emily Dickinson will best summarize where we will be. Perhaps in her words, looking backward and down, you will say: I climb the `Hill of Science' I view the landscape o'er; Such transcendental prospect I ne'er beheld before!

10 CFR 962.3 - Byproduct material.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 10 Energy 4 2010-01-01 2010-01-01 false Byproduct material. 962.3 Section 962.3 Energy DEPARTMENT OF ENERGY BYPRODUCT MATERIAL § 962.3 Byproduct material. (a) For purposes of this part, the term byproduct material means any radioactive material (except special nuclear material) yielded in or made...

10 CFR 962.3 - Byproduct material.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 10 Energy 4 2011-01-01 2011-01-01 false Byproduct material. 962.3 Section 962.3 Energy DEPARTMENT OF ENERGY BYPRODUCT MATERIAL § 962.3 Byproduct material. (a) For purposes of this part, the term byproduct material means any radioactive material (except special nuclear material) yielded in or made...

Method of making nanostructured glass-ceramic waste forms

DOEpatents

Gao, Huizhen; Wang, Yifeng; Rodriguez, Mark A.; Bencoe, Denise N.

2012-12-18

A method of rendering hazardous materials less dangerous comprising trapping the hazardous material in nanopores of a nanoporous composite material, reacting the trapped hazardous material to render it less volatile/soluble, sealing the trapped hazardous material, and vitrifying the nanoporous material containing the less volatile/soluble hazardous material.

10 CFR 962.3 - Byproduct material.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 10 Energy 4 2013-01-01 2013-01-01 false Byproduct material. 962.3 Section 962.3 Energy DEPARTMENT OF ENERGY BYPRODUCT MATERIAL § 962.3 Byproduct material. (a) For purposes of this part, the term byproduct material means any radioactive material (except special nuclear material) yielded in or made...

10 CFR 962.3 - Byproduct material.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 10 Energy 4 2012-01-01 2012-01-01 false Byproduct material. 962.3 Section 962.3 Energy DEPARTMENT OF ENERGY BYPRODUCT MATERIAL § 962.3 Byproduct material. (a) For purposes of this part, the term byproduct material means any radioactive material (except special nuclear material) yielded in or made...

29 CFR 1910.1096 - Ionizing radiation.

Code of Federal Regulations, 2012 CFR

2012-07-01

... material, as defined in the Atomic Energy Act of 1954, as amended, under a license issued by the Nuclear... material, byproduct material, or special nuclear material, as defined in the Atomic Energy Act of 1954, as... source material, byproduct material, or special nuclear material, as defined in the Atomic Energy Act of...

29 CFR 1910.1096 - Ionizing radiation.

Code of Federal Regulations, 2011 CFR

2011-07-01

... material, as defined in the Atomic Energy Act of 1954, as amended, under a license issued by the Nuclear... material, byproduct material, or special nuclear material, as defined in the Atomic Energy Act of 1954, as... source material, byproduct material, or special nuclear material, as defined in the Atomic Energy Act of...

29 CFR 1910.1096 - Ionizing radiation.

Code of Federal Regulations, 2014 CFR

2014-07-01

... material, as defined in the Atomic Energy Act of 1954, as amended, under a license issued by the Nuclear... material, byproduct material, or special nuclear material, as defined in the Atomic Energy Act of 1954, as... source material, byproduct material, or special nuclear material, as defined in the Atomic Energy Act of...

The Physics and Chemistry of Materials

NASA Astrophysics Data System (ADS)

Gersten, Joel I.; Smith, Frederick W.

2001-06-01

A comprehensive introduction to the structure, properties, and applications of materials This title provides the first unified treatment for the broad subject of materials. Authors Gersten and Smith use a fundamental approach to define the structure and properties of a wide range of solids on the basis of the local chemical bonding and atomic order present in the material. Emphasizing the physical and chemical origins of material properties, the book focuses on the most technologically important materials being utilized and developed by scientists and engineers. Appropriate for use in advanced materials courses, The Physics and Chemistry of Materials provides the background information necessary to assimilate the current academic and patent literature on materials and their applications. Problem sets, illustrations, and helpful tables complete this well-rounded new treatment. Five sections cover these important topics: * Structure of materials, including crystal structure, bonding in solids, diffraction and the reciprocal lattice, and order and disorder in solids * Physical properties of materials, including electrical, thermal, optical, magnetic, and mechanical properties * Classes of materials, including semiconductors, superconductors, magnetic materials, and optical materials in addition to metals, ceramics, polymers, dielectrics, and ferroelectrics * A section on surfaces, thin films, interfaces, and multilayers discusses the effects of spatial discontinuities in the physical and chemical structure of materials * A section on synthesis and processing examines the effects of synthesis on the structure and properties of various materials This book is enhanced by a Web-based supplement that offers advanced material together with an entire electronic chapter on the characterization of materials. The Physics and Chemistry of Materials is a complete introduction to the structure and properties of materials for students and an excellent reference for scientists and engineers.

Developing Novel Protein-based Materials using Ultrabithorax: Production, Characterization, and Functionalization

NASA Astrophysics Data System (ADS)

Huang, Zhao

2011-12-01

Compared to 'conventional' materials made from metal, glass, or ceramics, protein-based materials have unique mechanical properties. Furthermore, the morphology, mechanical properties, and functionality of protein-based materials may be optimized via sequence engineering for use in a variety of applications, including textile materials, biosensors, and tissue engineering scaffolds. The development of recombinant DNA technology has enabled the production and engineering of protein-based materials ex vivo. However, harsh production conditions can compromise the mechanical properties of protein-based materials and diminish their ability to incorporate functional proteins. Developing a new generation of protein-based materials is crucial to (i) improve materials assembly conditions, (ii) create novel mechanical properties, and (iii) expand the capacity to carry functional protein/peptide sequences. This thesis describes development of novel protein-based materials using Ultrabithorax, a member of the Hox family of proteins that regulate developmental pathways in Drosophila melanogaster. The experiments presented (i) establish the conditions required for the assembly of Ubx-based materials, (ii) generate a wide range of Ubx morphologies, (iii) examine the mechanical properties of Ubx fibers, (iv) incorporate protein functions to Ubx-based materials via gene fusion, (v) pattern protein functions within the Ubx materials, and (vi) examine the biocompatibility of Ubx materials in vitro. Ubx-based materials assemble at mild conditions compatible with protein folding and activity, which enables Ubx chimeric materials to retain the function of appended proteins in spatial patterns determined by materials assembly. Ubx-based materials also display mechanical properties comparable to existing protein-based materials and demonstrate good biocompatibility with living cells in vitro. Taken together, this research demonstrates the unique features and future potential of novel Ubx-based materials.

Non-thermal plasma conversion of hydrocarbons

DOE Office of Scientific and Technical Information (OSTI.GOV)

Strohm, James J.; Skoptsov, George L.; Musselman, Evan T.

A non-thermal plasma is generated to selectively convert a precursor to a product. More specifically, plasma forming material and a precursor material are provided to a reaction zone of a vessel. The reaction zone is exposed to microwave radiation, including exposing the plasma forming material and the precursor material to the microwave radiation. The exposure of the plasma forming material to the microwave radiation selectively converts the plasma forming material to a non-thermal plasma including formation of one or more streamers. The precursor material is mixed with the plasma forming material and the precursor material is exposed to the non-thermalmore » plasma including exposing the precursor material to the one or more streamers. The exposure of the precursor material to the streamers and the microwave radiation selectively converts the precursor material to a product.« less

Hydrogen gettering packing material, and process for making same

DOEpatents

LeMay, James D.; Thompson, Lisa M.; Smith, Henry Michael; Schicker, James R.

2001-01-01

A hydrogen gettering system for a sealed container is disclosed comprising packing material for use within the sealed container, and a coating film containing hydrogen gettering material on at least a portion of the surface of such packing material. The coating film containing the hydrogen gettering material comprises a mixture of one or more organic materials capable of reacting with hydrogen and one or more catalysts capable of catalyzing the reaction of hydrogen with such one or more organic materials. The mixture of one or more organic materials capable of reacting with hydrogen and the one or more catalysts is dispersed in a suitable carrier which preferably is a curable film-forming material. In a preferred embodiment, the packing material comprises a foam material which is compatible with the coating film containing hydrogen gettering material thereon.

Buffer layers for coated conductors

DOEpatents

Stan, Liliana [Los Alamos, NM; Jia, Quanxi [Los Alamos, NM; Foltyn, Stephen R [Los Alamos, NM

2011-08-23

A composite structure is provided including a base substrate, an IBAD oriented material upon the base substrate, and a cubic metal oxide material selected from the group consisting of rare earth zirconates and rare earth hafnates upon the IBAD oriented material. Additionally, an article is provided including a base substrate, an IBAD oriented material upon the base substrate, a cubic metal oxide material selected from the group consisting of rare earth zirconates and rare earth hafnates upon the IBAD oriented material, and a thick film upon the cubic metal oxide material. Finally, a superconducting article is provided including a base substrate, an IBAD oriented material upon the base substrate, a cubic metal oxide material selected from the group consisting of rare earth zirconates and rare earth hafnates upon the IBAD oriented material, and an yttrium barium copper oxide material upon the cubic metal oxide material.

Composite materials formed with anchored nanostructures

DOEpatents

Seals, Roland D; Menchhofer, Paul A; Howe, Jane Y; Wang, Wei

2015-03-10

A method of forming nano-structure composite materials that have a binder material and a nanostructure fiber material is described. A precursor material may be formed using a mixture of at least one metal powder and anchored nanostructure materials. The metal powder mixture may be (a) Ni powder and (b) NiAl powder. The anchored nanostructure materials may comprise (i) NiAl powder as a support material and (ii) carbon nanotubes attached to nanoparticles adjacent to a surface of the support material. The process of forming nano-structure composite materials typically involves sintering the mixture under vacuum in a die. When Ni and NiAl are used in the metal powder mixture Ni.sub.3Al may form as the binder material after sintering. The mixture is sintered until it consolidates to form the nano-structure composite material.

Green materials for sustainable development

NASA Astrophysics Data System (ADS)

Purwasasmita, B. S.

2017-03-01

Sustainable development is an integrity of multidiscipline concept combining ecological, social and economic aspects to construct a liveable human living system. The sustainable development can be support through the development of green materials. Green materials offers a unique characteristic and properties including abundant in nature, less toxic, economically affordable and versatility in term of physical and chemical properties. Green materials can be applied for a numerous field in science and technology applications including for energy, building, construction and infrastructures, materials science and engineering applications and pollution management and technology. For instance, green materials can be developed as a source for energy production. Green materials including biomass-based source can be developed as a source for biodiesel and bioethanol production. Biomass-based materials also can be transformed into advanced functionalized materials for advanced bio-applications such as the transformation of chitin into chitosan which further used for biomedicine, biomaterials and tissue engineering applications. Recently, cellulose-based material and lignocellulose-based materials as a source for the developing functional materials attracted the potential prospect for biomaterials, reinforcing materials and nanotechnology. Furthermore, the development of pigment materials has gaining interest by using the green materials as a source due to their unique properties. Eventually, Indonesia as a large country with a large biodiversity can enhance the development of green material to strengthen our nation competitiveness and develop the materials technology for the future.

Coated armor system and process for making the same

DOEpatents

Chu, Henry S.; Lillo, Thomas M.; McHugh, Kevin M.

2010-11-23

An armor system and method involves providing a core material and a stream of atomized coating material that comprises a liquid fraction and a solid fraction. An initial layer is deposited on the core material by positioning the core material in the stream of atomized coating material wherein the solid fraction of the stream of atomized coating material is less than the liquid fraction of the stream of atomized coating material on a weight basis. An outer layer is then deposited on the initial layer by positioning the core material in the stream of atomized coating material wherein the solid fraction of the stream of atomized coating material is greater than the liquid fraction of the stream of atomized coating material on a weight basis.

Systems and methods for forming defects on graphitic materials and curing radiation-damaged graphitic materials

DOEpatents

Ryu, Sunmin; Brus, Louis E.; Steigerwald, Michael L.; Liu, Haitao

2012-09-25

Systems and methods are disclosed herein for forming defects on graphitic materials. The methods for forming defects include applying a radiation reactive material on a graphitic material, irradiating the applied radiation reactive material to produce a reactive species, and permitting the reactive species to react with the graphitic material to form defects. Additionally, disclosed are methods for removing defects on graphitic materials.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mccall, Scott K.; Kuntz, Joshua D.

A method of making a bulk exchange spring magnet by providing a magnetically soft material, providing a hard magnetic material, and producing a composite of said magnetically soft material and said hard magnetic material to make the bulk exchange spring magnet. The step of producing a composite of magnetically soft material and hard magnetic material is accomplished by electrophoretic deposition of the magnetically soft material and the hard magnetic material to make the bulk exchange spring magnet.

Municipal waste processing apparatus

DOEpatents

Mayberry, John L.

1988-01-01

Municipal waste materials are processed by crushing the materials so that pieces of noncombustible material are smaller than a selected size and pieces of combustible material are larger than the selected size. The crushed materials are placed on a vibrating mesh screen conveyor belt having openings which pass the smaller, noncombustible pieces of material, but do not pass the larger, combustible pieces of material. Pieces of material which become lodged in the openings of the conveyor belt may be removed by cylindrical deraggers or pressurized air. The crushed materials may be fed onto the conveyor belt by a vibrating feed plate which shakes the materials so that they tend to lie flat.

Dopant type and/or concentration selective dry photochemical etching of semiconductor materials

DOEpatents

Ashby, Carol I. H.; Dishman, James L.

1987-01-01

A method of selectively photochemically dry etching a first semiconductor material of a given composition in the presence of a second semiconductor material which is of a composition different from said first material, said second material substantially not being etched during said method, comprises subjecting both materials to the same photon flux of an energy greater than their respective direct bandgaps and to the same gaseous chemical etchant under conditions where said etchant would be ineffective for chemical etching of either material were the photons not present, said conditions also being such that the resultant electronic structure of the first semiconductor material under said photon flux is sufficient for the first material to undergo substantial photochemical etching under said conditions and being such that the resultant electronic structure of the second semiconductor material under said photon flux is not sufficient for the second material to undergo substantial photochemical etching under said conditions. In a preferred mode, the materials are subjected to a bias voltage which suppresses etching in n- or p- type material but not in p- or n-type material, respectively; or suppresses etching in the more heavily doped of two n-type or two p-type materials.

Dopant type and/or concentration selective dry photochemical etching of semiconductor materials

DOEpatents

Ashby, C.R.H.; Dishman, J.L.

1985-10-11

Disclosed is a method of selectively photochemically dry etching a first semiconductor material of a given composition in the presence of a second semiconductor material which is of a composition different from said first material, said second material substantially not being etched during said method. The method comprises subjecting both materials to the same photon flux of an energy greater than their respective direct bandgaps and to the same gaseous chemical etchant under conditions where said etchant would be ineffective for chemical etching of either material were the photons not present, said conditions also being such that the resultant electronic structure of the first semiconductor material under said photon flux is sufficient for the first material to undergo substantial photochemical etching under said conditions and being such that the resultant electronic structure of the second semiconductor material under said photon flux is not sufficient for the second material to undergo substantial photochemical etching under said conditions. In a preferred mode, the materials are subjected to a bias voltage which suppresses etching in n- or p-type material but not in p- or n-type material, respectively; or suppresses etching in the more heavily doped of two n-type or two p-type materials.

Critical Materials Institute

DOE Office of Scientific and Technical Information (OSTI.GOV)

King, Alex

2013-01-09

Ames Laboratory Director Alex King talks about the goals of the Critical Materials Institute in diversifying the supply of critical materials, developing substitute materials, developing tools and techniques for recycling critical materials, and forecasting materials needs to avoid future shortages.

Critical Materials Institute

ScienceCinema

King, Alex

2017-12-22

Ames Laboratory Director Alex King talks about the goals of the Critical Materials Institute in diversifying the supply of critical materials, developing substitute materials, developing tools and techniques for recycling critical materials, and forecasting materials needs to avoid future shortages.

Composite material dosimeters

DOEpatents

Miller, Steven D.

1996-01-01

The present invention is a composite material containing a mix of dosimeter material powder and a polymer powder wherein the polymer is transparent to the photon emission of the dosimeter material powder. By mixing dosimeter material powder with polymer powder, less dosimeter material is needed compared to a monolithic dosimeter material chip. Interrogation is done with excitation by visible light.

Computational Text Analysis: A More Comprehensive Approach to Determine Readability of Reading Materials

ERIC Educational Resources Information Center

Aziz, Anealka; Fook, Chan Yuen; Alsree, Zubaida

2010-01-01

Reading materials are considered having high readability if readers are interested to read the materials, understand the content of the materials and able to read the materials fluently. In contrast, reading materials with low readability discourage readers from reading the materials, create difficulties for readers to understand the content of…

10 CFR 74.41 - Nuclear material control and accounting for special nuclear material of moderate strategic...

Code of Federal Regulations, 2011 CFR

2011-01-01

... 10 Energy 2 2011-01-01 2011-01-01 false Nuclear material control and accounting for special nuclear material of moderate strategic significance. 74.41 Section 74.41 Energy NUCLEAR REGULATORY COMMISSION (CONTINUED) MATERIAL CONTROL AND ACCOUNTING OF SPECIAL NUCLEAR MATERIAL Special Nuclear Material...

10 CFR 74.31 - Nuclear material control and accounting for special nuclear material of low strategic significance.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 10 Energy 2 2014-01-01 2014-01-01 false Nuclear material control and accounting for special nuclear material of low strategic significance. 74.31 Section 74.31 Energy NUCLEAR REGULATORY COMMISSION (CONTINUED) MATERIAL CONTROL AND ACCOUNTING OF SPECIAL NUCLEAR MATERIAL Special Nuclear Material of Low...

10 CFR 74.41 - Nuclear material control and accounting for special nuclear material of moderate strategic...

Code of Federal Regulations, 2013 CFR

2013-01-01

... 10 Energy 2 2013-01-01 2013-01-01 false Nuclear material control and accounting for special nuclear material of moderate strategic significance. 74.41 Section 74.41 Energy NUCLEAR REGULATORY COMMISSION (CONTINUED) MATERIAL CONTROL AND ACCOUNTING OF SPECIAL NUCLEAR MATERIAL Special Nuclear Material...

10 CFR 74.41 - Nuclear material control and accounting for special nuclear material of moderate strategic...

Code of Federal Regulations, 2014 CFR

2014-01-01

... 10 Energy 2 2014-01-01 2014-01-01 false Nuclear material control and accounting for special nuclear material of moderate strategic significance. 74.41 Section 74.41 Energy NUCLEAR REGULATORY COMMISSION (CONTINUED) MATERIAL CONTROL AND ACCOUNTING OF SPECIAL NUCLEAR MATERIAL Special Nuclear Material...

10 CFR 74.41 - Nuclear material control and accounting for special nuclear material of moderate strategic...

Code of Federal Regulations, 2012 CFR

2012-01-01

... 10 Energy 2 2012-01-01 2012-01-01 false Nuclear material control and accounting for special nuclear material of moderate strategic significance. 74.41 Section 74.41 Energy NUCLEAR REGULATORY COMMISSION (CONTINUED) MATERIAL CONTROL AND ACCOUNTING OF SPECIAL NUCLEAR MATERIAL Special Nuclear Material...

10 CFR 74.31 - Nuclear material control and accounting for special nuclear material of low strategic significance.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 10 Energy 2 2012-01-01 2012-01-01 false Nuclear material control and accounting for special nuclear material of low strategic significance. 74.31 Section 74.31 Energy NUCLEAR REGULATORY COMMISSION (CONTINUED) MATERIAL CONTROL AND ACCOUNTING OF SPECIAL NUCLEAR MATERIAL Special Nuclear Material of Low...

10 CFR 74.41 - Nuclear material control and accounting for special nuclear material of moderate strategic...

Code of Federal Regulations, 2010 CFR

2010-01-01

... 10 Energy 2 2010-01-01 2010-01-01 false Nuclear material control and accounting for special nuclear material of moderate strategic significance. 74.41 Section 74.41 Energy NUCLEAR REGULATORY COMMISSION (CONTINUED) MATERIAL CONTROL AND ACCOUNTING OF SPECIAL NUCLEAR MATERIAL Special Nuclear Material...

10 CFR 74.31 - Nuclear material control and accounting for special nuclear material of low strategic significance.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 10 Energy 2 2011-01-01 2011-01-01 false Nuclear material control and accounting for special nuclear material of low strategic significance. 74.31 Section 74.31 Energy NUCLEAR REGULATORY COMMISSION (CONTINUED) MATERIAL CONTROL AND ACCOUNTING OF SPECIAL NUCLEAR MATERIAL Special Nuclear Material of Low...

10 CFR 74.31 - Nuclear material control and accounting for special nuclear material of low strategic significance.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 10 Energy 2 2013-01-01 2013-01-01 false Nuclear material control and accounting for special nuclear material of low strategic significance. 74.31 Section 74.31 Energy NUCLEAR REGULATORY COMMISSION (CONTINUED) MATERIAL CONTROL AND ACCOUNTING OF SPECIAL NUCLEAR MATERIAL Special Nuclear Material of Low...

Theoretical backgrounds of non-tempered materials production based on new raw materials

NASA Astrophysics Data System (ADS)

Lesovik, V. S.; Volodchenko, A. A.; Glagolev, E. S.; Chernysheva, N. V.; Lashina, I. V.; Feduk, R. S.

2018-03-01

One of the trends in construction material science is development and implementation of highly effective finish materials which improve architectural exterior of cities. Silicate materials widely-used in the construction today have rather low decorative properties. Different coloring agents are used in order to produce competitive materials, but due to the peculiarities of the production, process very strict specifications are applied to them. The use of industrial wastes or variety of rock materials as coloring agents is of great interest nowadays. The article shows that clay rock can be used as raw material in production of finish materials of non-autoclaved solidification. This raw material due to its material composition actively interacts with cementing component in steam treatment at 90–95 °C with formation of cementing joints that form a firm coagulative-cristalized and crystallization structure of material providing high physic-mechanical properties of silicate goods. It is determined that energy-saving, colored finish materials with compression strength up to 16 MPa can be produced from clay rocks.

Materials science and architecture

NASA Astrophysics Data System (ADS)

Bechthold, Martin; Weaver, James C.

2017-12-01

Materiality — the use of various materials in architecture — has been fundamental to the design and construction of buildings, and materials science has traditionally responded to needs formulated by design, engineering and construction professionals. Material properties and processes are shaping buildings and influencing how they perform. The advent of technologies such as digital fabrication, robotics and 3D printing have not only accelerated the development of new construction solutions, but have also led to a renewed interest in materials as a catalyst for novel architectural design. In parallel, materials science has transformed from a field that explains materials to one that designs materials from the bottom up. The conflation of these two trends is giving rise to materials-based design research in which architects, engineers and materials scientists work as partners in the conception of new materials systems and their applications. This Review surveys this development for different material classes (wood, ceramics, metals, concrete, glass, synthetic composites and polymers), with an emphasis on recent trends and innovations.

Organic hybrid planar-nanocrystalline bulk heterojunctions

DOEpatents

Forrest, Stephen R [Ann Arbor, MI; Yang, Fan [Piscataway, NJ

2011-03-01

A photosensitive optoelectronic device having an improved hybrid planar bulk heterojunction includes a plurality of photoconductive materials disposed between the anode and the cathode. The photoconductive materials include a first continuous layer of donor material and a second continuous layer of acceptor material. A first network of donor material or materials extends from the first continuous layer toward the second continuous layer, providing continuous pathways for conduction of holes to the first continuous layer. A second network of acceptor material or materials extends from the second continuous layer toward the first continuous layer, providing continuous pathways for conduction of electrons to the second continuous layer. The first network and the second network are interlaced with each other. At least one other photoconductive material is interspersed between the interlaced networks. This other photoconductive material or materials has an absorption spectra different from the donor and acceptor materials.

Organic hybrid planar-nanocrystalline bulk heterojunctions

DOEpatents

Forrest, Stephen R.; Yang, Fan

2013-04-09

A photosensitive optoelectronic device having an improved hybrid planar bulk heterojunction includes a plurality of photoconductive materials disposed between the anode and the cathode. The photoconductive materials include a first continuous layer of donor material and a second continuous layer of acceptor material. A first network of donor material or materials extends from the first continuous layer toward the second continuous layer, providing continuous pathways for conduction of holes to the first continuous layer. A second network of acceptor material or materials extends from the second continuous layer toward the first continuous layer, providing continuous pathways for conduction of electrons to the second continuous layer. The first network and the second network are interlaced with each other. At least one other photoconductive material is interspersed between the interlaced networks. This other photoconductive material or materials has an absorption spectra different from the donor and acceptor materials.

Process for producing dispersed particulate composite materials

DOEpatents

Henager, Jr., Charles H.; Hirth, John P.

1995-01-01

This invention is directed to a process for forming noninterwoven dispersed particulate composite products. In one case a composite multi-layer film product comprises a substantially noninterwoven multi-layer film having a plurality of discrete layers. This noninterwoven film comprises at least one discrete layer of a first material and at least one discrete layer of a second material. In another case the first and second materials are blended together with each other. In either case, the first material comprises a metalloid and the second material a metal compound. At least one component of a first material in one discrete layer undergoes a solid state displacement reaction with at least one component of a second material thereby producing the requisite noninterwoven composite film product. Preferably, the first material comprises silicon, the second material comprises Mo.sub.2 C, the third material comprises SiC and the fourth material comprises MoSi.sub.2.

Systems including catalysts in porous zeolite materials within a reactor for use in synthesizing hydrocarbons

DOEpatents

Rolllins, Harry W [Idaho Falls, ID; Petkovic, Lucia M [Idaho Falls, ID; Ginosar, Daniel M [Idaho Falls, ID

2012-07-24

Catalytic structures include a catalytic material disposed within a zeolite material. The catalytic material may be capable of catalyzing a formation of methanol from carbon monoxide and/or carbon dioxide, and the zeolite material may be capable of catalyzing a formation of hydrocarbon molecules from methanol. The catalytic material may include copper and zinc oxide. The zeolite material may include a first plurality of pores substantially defined by a crystal structure of the zeolite material and a second plurality of pores dispersed throughout the zeolite material. Systems for synthesizing hydrocarbon molecules also include catalytic structures. Methods for synthesizing hydrocarbon molecules include contacting hydrogen and at least one of carbon monoxide and carbon dioxide with such catalytic structures. Catalytic structures are fabricated by forming a zeolite material at least partially around a template structure, removing the template structure, and introducing a catalytic material into the zeolite material.

All 2D, high mobility, flexible, transparent thin film transistor

DOEpatents

Das, Saptarshi; Sumant, Anirudha V.; Roelofs, Andreas

2017-01-17

A two-dimensional thin film transistor and a method for manufacturing a two-dimensional thin film transistor includes layering a semiconducting channel material on a substrate, providing a first electrode material on top of the semiconducting channel material, patterning a source metal electrode and a drain metal electrode at opposite ends of the semiconducting channel material from the first electrode material, opening a window between the source metal electrode and the drain metal electrode, removing the first electrode material from the window located above the semiconducting channel material providing a gate dielectric above the semiconducting channel material, and providing a top gate above the gate dielectric, the top gate formed from a second electrode material. The semiconducting channel material is made of tungsten diselenide, the first electrode material and the second electrode material are made of graphene, and the gate dielectric is made of hexagonal boron nitride.

Development of aircraft brake materials. [evaluation of metal and ceramic materials in sliding tests simulation of aircraft braking

NASA Technical Reports Server (NTRS)

Ho, T. L.; Peterson, M. B.

1974-01-01

The requirements of brake materials were outlined and a survey made to select materials to meet the needs of high temperature brakes. A number of metals and ceramic materials were selected and evaluated in sliding tests which simulated aircraft braking. Nickel, molybdenum tungsten, Zr02, high temperature cements and carbons were tested. Additives were then incorporated into these materials to optimize their wear or strength behavior with particular emphasis on nickel and molybdenum base materials and a high temperature potassium silicate cement. Optimum materials were developed which improved wear behavior over conventional brake materials in the simulated test. The best materials are a nickel, aluminum oxide, lead tungstate composition containing graphite or molybdenum disulphite; a molybdenum base material containing LPA100 (an intermetallic compound of cobalt, molybdenum, and silicon); and a carbon material (P5).

Thermoelectric skutterudite compositions and methods for producing the same

DOEpatents

Ren, Zhifeng; Yang, Jian; Yan, Xiao; He, Qinyu; Chen, Gang; Hao, Qing

2014-11-11

Compositions related to skutterudite-based thermoelectric materials are disclosed. Such compositions can result in materials that have enhanced ZT values relative to one or more bulk materials from which the compositions are derived. Thermoelectric materials such as n-type and p-type skutterudites with high thermoelectric figures-of-merit can include materials with filler atoms and/or materials formed by compacting particles (e.g., nanoparticles) into a material with a plurality of grains each having a portion having a skutterudite-based structure. Methods of forming thermoelectric skutterudites, which can include the use of hot press processes to consolidate particles, are also disclosed. The particles to be consolidated can be derived from (e.g., grinded from), skutterudite-based bulk materials, elemental materials, other non-Skutterudite-based materials, or combinations of such materials.

Visible scintillation photodetector device incorporating chalcopyrite semiconductor crystals

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stowe, Ashley C.; Burger, Arnold

2017-04-04

A photodetector device, including: a scintillator material operable for receiving incident radiation and emitting photons in response; a photodetector material coupled to the scintillator material operable for receiving the photons emitted by the scintillator material and generating a current in response, wherein the photodetector material includes a chalcopyrite semiconductor crystal; and a circuit coupled to the photodetector material operable for characterizing the incident radiation based on the current generated by the photodetector material. Optionally, the scintillator material includes a gamma scintillator material and the incident radiation received includes gamma rays. Optionally, the photodetector material is further operable for receiving thermalmore » neutrons and generating a current in response. The circuit is further operable for characterizing the thermal neutrons based on the current generated by the photodetector material.« less

Methods of producing armor systems, and armor systems produced using such methods

DOEpatents

Chu, Henry S; Lillo, Thomas M; McHugh, Kevin M

2013-02-19

An armor system and method involves providing a core material and a stream of atomized coating material that comprises a liquid fraction and a solid fraction. An initial layer is deposited on the core material by positioning the core material in the stream of atomized coating material wherein the solid fraction of the stream of atomized coating material is less than the liquid fraction of the stream of atomized coating material on a weight basis. An outer layer is then deposited on the initial layer by positioning the core material in the stream of atomized coating material wherein the solid fraction of the stream of atomized coating material is greater than the liquid fraction of the stream of atomized coating material on a weight basis.

Thermoelectric Skutterudite Compositions and Methods for Producing the Same

NASA Technical Reports Server (NTRS)

Yang, Jian (Inventor); Yan, Xiao (Inventor); Ren, Zhifeng (Inventor); Hao, Qing (Inventor); He, Qinyu (Inventor); Chen, Gang (Inventor)

2014-01-01

Compositions related to skutterudite-based thermoelectric materials are disclosed. Such compositions can result in materials that have enhanced ZT values relative to one or more bulk materials from which the compositions are derived. Thermoelectric materials such as n-type and p-type skutterudites with high thermoelectric figures-of-merit can include materials with filler atoms and/or materials formed by compacting particles (e.g., nanoparticles) into a material with a plurality of grains each having a portion having a skutterudite-based structure. Methods of forming thermoelectric skutterudites, which can include the use of hot press processes to consolidate particles, are also disclosed. The particles to be consolidated can be derived from (e.g., grinded from), skutterudite-based bulk materials, elemental materials, other non-Skutterudite-based materials, or combinations of such materials.

Encapsulation of thermal energy storage media

DOEpatents

Dhau, Jaspreet; Goswami, Dharendra; Jotshi, Chand K.; Stefanakos, Elias K.

2017-09-19

In one embodiment, a phase change material is encapsulated by forming a phase change material pellet, coating the pellet with flexible material, heating the coated pellet to melt the phase change material, wherein the phase change materials expands and air within the pellet diffuses out through the flexible material, and cooling the coated pellet to solidify the phase change material.

75 FR 30863 - Nixon Presidential Historical Materials: Opening of Materials

Federal Register 2010, 2011, 2012, 2013, 2014

2010-06-02

... NATIONAL ARCHIVES AND RECORDS ADMINISTRATION Nixon Presidential Historical Materials: Opening of Materials AGENCY: National Archives and Records Administration. ACTION: Notice of opening of additional materials. SUMMARY: This notice announces the opening of additional Nixon Presidential Historical Materials...

Inert electrode connection

DOEpatents

Weyand, J.D.; Woods, R.W.; DeYoung, D.H.; Ray, S.P.

1985-02-19

An inert electrode connection is disclosed wherein a layer of inert electrode material is bonded to a layer of conductive material by providing at least one intermediate layer of material therebetween comprising a predetermined ratio of inert material to conductive material. In a preferred embodiment, the connection is formed by placing in a die a layer of powdered inert material, at least one layer of a mixture of powdered inert material and conductive material, and a layer of powdered conductive material. The connection is then formed by pressing the material at 15,000--20,000 psi to form a powder compact and then densifying the powder compact in an inert or reducing atmosphere at a temperature of 1,200--1,500 C. 5 figs.

Martian surface materials

NASA Technical Reports Server (NTRS)

Moore, H. J.

1991-01-01

A semiquantitative appreciation for the physical properties of the Mars surface materials and their global variations can be gained from the Viking Lander and remote sensing observations. Analyses of Lander data yields estimates of the mechanical properties of the soil-like surface materials and best guess estimates can be made for the remote sensing signatures of the soil-like materials at the landing sites. Results show that significant thickness of powderlike surface materials with physical properties similar to drift material are present on Mars and probably pervasive in the Tharsis region. It also appears likely that soil-like materials similar to crusty to cloddy material are typical for Mars, and that soil-like material similar to blocky material are common on Mars.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Seo, Dong-Kyun; Medpelli, Dinesh; Ladd, Danielle

A product formed from a first material including a geopolymer resin material, a geopolymer material, or a combination thereof by contacting the first material with a fluid and removing at least some of the fluid to yield a product. The first material may be formed by heating and/or aging an initial geopolymer resin material to yield the first material before contacting the first material with the fluid. In some cases, contacting the first material with the fluid breaks up or disintegrates the first material (e.g., in response to contact with the fluid and in the absence of external mechanical stress),more » thereby forming particles having an external dimension in a range between 1 nm and 2 cm.« less

Orbital foamed material extruder

NASA Technical Reports Server (NTRS)

Tucker, Dennis S. (Inventor)

2009-01-01

This invention is a process for producing foamed material in space comprising the steps of: rotating the material to simulate the force of gravity; heating the rotating material until it is molten; extruding the rotating, molten material; injecting gas into the extruded, rotating, molten material to produce molten foamed material; allowing the molten foamed material to cool to below melting temperature to produce the foamed material. The surface of the extruded foam may be heated to above melting temperature and allowed to cool to below melting temperature. The extruded foam may also be cut to predetermined length. The starting material may be metal or glass. Heating may be accomplished by electrical heating elements or by solar heating.

Municipal waste processing apparatus

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mayberry, J L

1987-01-15

Municipal waste materials are processed by crushing the materials so that pieces of noncombustible material are smaller than a selected size and pieces of combustible material are larger than the selected size. The crushed materials are placed on a vibrating mesh screen conveyor belt having openings which pass the smaller, noncombustible pieces of material, but do not pass the larger, combustible pieces of material. Pieces of material which become lodged in the openings of the conveyor belt may be removed by cylindrical deraggers or pressurized air. The crushed materials may be fed onto the conveyor belt by a vibrating feedmore » plate which shakes the materials so that they tend to lie flat.« less

Method for manufacturing lightning strike mitigation composites

NASA Technical Reports Server (NTRS)

Vaidyanathan, K. Ranji (Inventor); Campbell, Jeffrey (Inventor)

2012-01-01

A method for manufacturing a composite material utilizes a tooling material having a desired shape. The surface of the tooling material is coated with a composite film that includes a conductive filler material. A composite composition is introduced into contact with the surface of the tooling material to form a desired shape. The composite composition is processed to produce the composite material, and the composite material has a conductive composite surface layer that includes the conductive filler material.

Developing Maritime Thematic Expressions on English Reading Materials Used In Indonesia: Junior High School Context

NASA Astrophysics Data System (ADS)

Syahdan; Lusandi, Budi

2018-05-01

Indonesia is a maritime country with the largest islands in the world covering more than seventeen thousands islands. This wealth should be wisely explored for all their advantages. Also, all parties should take responsibility to inherit values embedded in the wealth. This study is a Research and Development focusing at developing English worksheet materials in the theme of Maritime Thematic Expressions. Specifically, it aimed at identifying initial contents of the English worksheet, describing the development of worksheet materials and justifying contents of worksheet materials in facilitating the students’ needs in reading English materials. The flow of this R&D refers to Sugiono’s model that includes analyzing data, collecting data, designing materials, validating material, revising the material, piloting products, revising the material, piloting materials, revising the material and material development. The development of this material adjusted to the needs of syllabus and national strategic issues in maritime that were coined with students of Junior High School Terbuka Pekanbaru. The worsksheet development has been revised and validated by some experts of curriculum and linguistics. This material has also been piloted by the English teacher to determine of the students’ ability in comprehending the materials. Based on the results of this development, it can be concluded that the materials development were relevant with the standard competence and basic competence in syllabus of the students’ reading skill in Junior High School Terbuka Pekanbaru.

Toughened and corrosion- and wear-resistant composite structures and fabrication methods thereof

DOEpatents

Seals, Roland D; Ripley, Edward B; Hallman, Russell L

2014-04-08

Composite structures having a reinforced material interjoined with a substrate and methods of creating a composite material interjoined with a substrate. In some embodiments the composite structure may be a line or a spot or formed by reinforced material interjoined with the substrate. The methods typically include disposing a precursor material comprising titanium diboride and/or titanium monoboride on at least a portion of the substrate and heating the precursor material and the at least a portion of the substrate in the presence of an oxidation preventative until at least a portion of the precursor material forms reinforced material interjoined with the substrate. The precursor material may be disposed on the substrate as a sheet or a tape or a slurry or a paste. Localized surface heating may be used to heat the precursor material. The reinforced material typically comprises a titanium boron compound, such as titanium monoboride, and preferably comprises .beta.-titanium. The substrate is typically titanium-bearing, iron-bearing, or aluminum-bearing. A welding rod is provided as an embodiment. The welding rod includes a metal electrode and a precursor material is disposed adjacent at least a portion of the metal electrode. A material for use in forming a composite structure is provided. The material typically includes a precursor material that includes one or more materials selected from the following group: titanium diboride and titanium monoboride. The material also typically includes a flux.

Materials with structural hierarchy

NASA Technical Reports Server (NTRS)

Lakes, Roderic

1993-01-01

The role of structural hierarchy in determining bulk material properties is examined. Dense hierarchical materials are discussed, including composites and polycrystals, polymers, and biological materials. Hierarchical cellular materials are considered, including cellular solids and the prediction of strength and stiffness in hierarchical cellular materials.

42 CFR 423.2260 - Definitions concerning marketing materials.

Code of Federal Regulations, 2011 CFR

2011-10-01

... 42 Public Health 3 2011-10-01 2011-10-01 false Definitions concerning marketing materials. 423... Marketing Requirements § 423.2260 Definitions concerning marketing materials. As used in this subpart— Marketing materials. Marketing Materials include any informational materials targeted to Medicare...

42 CFR 422.2260 - Definitions concerning marketing materials.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 42 Public Health 3 2012-10-01 2012-10-01 false Definitions concerning marketing materials. 422... Marketing Requirements § 422.2260 Definitions concerning marketing materials. As used in this subpart— Marketing materials. Marketing materials include any informational materials targeted to Medicare...

42 CFR 422.2260 - Definitions concerning marketing materials.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 42 Public Health 3 2014-10-01 2014-10-01 false Definitions concerning marketing materials. 422... Marketing Requirements § 422.2260 Definitions concerning marketing materials. As used in this subpart— Marketing materials. Marketing materials include any informational materials targeted to Medicare...

42 CFR 422.2260 - Definitions concerning marketing materials.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 42 Public Health 3 2013-10-01 2013-10-01 false Definitions concerning marketing materials. 422... Marketing Requirements § 422.2260 Definitions concerning marketing materials. As used in this subpart— Marketing materials. Marketing materials include any informational materials targeted to Medicare...

Multifunctional materials and composites

DOEpatents

Seo, Dong-Kyun; Jeon, Ki-Wan

2017-08-22

Forming multifunctional materials and composites thereof includes contacting a first material having a plurality of oxygen-containing functional groups with a chalcogenide compound, and initiating a chemical reaction between the first material and the chalcogenide compound, thereby replacing oxygen in some of the oxygen-containing functional groups with chalcogen from the chalcogen-containing compound to yield a second material having chalcogen-containing functional groups and oxygen-containing functional groups. The first material is a carbonaceous material or a macromolecular material. A product including the second material is collected and may be processed further to yield a modified product or a composite.

Substrate Structures For Growth Of Highly Oriented And/Or Epitaxial Layers Thereon

DOEpatents

Arendt, Paul N.; Foltyn, Stephen R.; Groves, James R.; Jia, Quanxi

2005-07-26

A composite substrate structure including a substrate, a layer of a crystalline metal oxide or crystalline metal oxynitride material upon the substrate, a layer of an oriented cubic oxide material having a rock-salt-like structure upon the crystalline metal oxide or crystalline metal oxynitride material layer is provided together with additional layers such as one or more layers of a buffer material upon the oriented cubic oxide material layer. Jc's of 2.3×106 A/cm2 have been demonstrated with projected Ic's of 320 Amperes across a sample 1 cm wide for a superconducting article including a flexible polycrystalline metallic substrate, an inert oxide material layer upon the surface of the flexible polycrystalline metallic substrate, a layer of a crystalline metal oxide or crystalline metal oxynitride material upon the layer of the inert oxide material, a layer of an oriented cubic oxide material having a rock-salt-like structure upon the crystalline metal oxide or crystalline metal oxynitride material layer, a layer of a buffer material upon the oriented cubic oxide material layer, and, a top-layer of a high temperature superconducting material upon the layer of a buffer material.

Comparative study on stiffness properties of WOODCAST and conventional casting materials.

PubMed

Pirhonen, Eija; Pärssinen, Antti; Pelto, Mika

2013-08-01

Plaster-of-Paris and synthetic materials (e.g. fibreglass) have been in clinical use as casting materials for decades. An innovative casting material, WOODCAST, brings interesting alternatives to the traditional materials. The aim of this study was to compare the stiffness properties of the WOODCAST material to traditional casting materials. In immobilization by casting, materials with variable stiffness properties are required. Ring stiffness of cylindrical samples correlates well with cast rigidity. For load-bearing structures, the use of the WOODCAST Splint is recommended as equally high stiffness was obtained with the WOODCAST Splint as was with fibreglass. The WOODCAST 2 mm product is optimal for structures where some elasticity is required, and WOODCAST Ribbon can be used in any WOODCAST structure where further reinforcement is needed. The results show that WOODCAST material can be used in replacing traditional casting materials used in extremity immobilization. The mechanical properties of casting material play an important role in safe and effective fracture immobilization. Stiffness properties of the WOODCAST casting material and conventional materials - fibreglass and plaster-of-Paris - were analysed in this study. The WOODCAST Splint appears to compare favorably with traditional materials such as Scotchcast.

Materiomics: biological protein materials, from nano to macro.

PubMed

Cranford, Steven; Buehler, Markus J

2010-11-12

Materiomics is an emerging field of science that provides a basis for multiscale material system characterization, inspired in part by natural, for example, protein-based materials. Here we outline the scope and explain the motivation of the field of materiomics, as well as demonstrate the benefits of a materiomic approach in the understanding of biological and natural materials as well as in the design of de novo materials. We discuss recent studies that exemplify the impact of materiomics - discovering Nature's complexity through a materials science approach that merges concepts of material and structure throughout all scales and incorporates feedback loops that facilitate sensing and resulting structural changes at multiple scales. The development and application of materiomics is illustrated for the specific case of protein-based materials, which constitute the building blocks of a variety of biological systems such as tendon, bone, skin, spider silk, cells, and tissue, as well as natural composite material systems (a combination of protein-based and inorganic constituents) such as nacre and mollusk shells, and other natural multiscale systems such as cellulose-based plant and wood materials. An important trait of these materials is that they display distinctive hierarchical structures across multiple scales, where molecular details are exhibited in macroscale mechanical responses. Protein materials are intriguing examples of materials that balance multiple tasks, representing some of the most sustainable material solutions that integrate structure and function despite severe limitations in the quality and quantity of material building blocks. However, up until now, our attempts to analyze and replicate Nature's materials have been hindered by our lack of fundamental understanding of these materials' intricate hierarchical structures, scale-bridging mechanisms, and complex material components that bestow protein-based materials their unique properties. Recent advances in analytical tools and experimental methods allow a holistic view of such a hierarchical biological material system. The integration of these approaches and amalgamation of material properties at all scale levels to develop a complete description of a material system falls within the emerging field of materiomics. Materiomics is the result of the convergence of engineering and materials science with experimental and computational biology in the context of natural and synthetic materials. Through materiomics, fundamental advances in our understanding of structure-property-process relations of biological systems contribute to the mechanistic understanding of certain diseases and facilitate the development of novel biological, biologically inspired, and completely synthetic materials for applications in medicine (biomaterials), nanotechnology, and engineering.

Biological materials by design.

PubMed

Qin, Zhao; Dimas, Leon; Adler, David; Bratzel, Graham; Buehler, Markus J

2014-02-19

In this topical review we discuss recent advances in the use of physical insight into the way biological materials function, to design novel engineered materials 'from scratch', or from the level of fundamental building blocks upwards and by using computational multiscale methods that link chemistry to material function. We present studies that connect advances in multiscale hierarchical material structuring with material synthesis and testing, review case studies of wood and other biological materials, and illustrate how engineered fiber composites and bulk materials are designed, modeled, and then synthesized and tested experimentally. The integration of experiment and simulation in multiscale design opens new avenues to explore the physics of materials from a fundamental perspective, and using complementary strengths from models and empirical techniques. Recent developments in this field illustrate a new paradigm by which complex material functionality is achieved through hierarchical structuring in spite of simple material constituents.

Doped Chiral Polymer Metamaterials

NASA Technical Reports Server (NTRS)

Kang, Jin Ho (Inventor); Gordon, Keith L. (Inventor); Sauti, Godfrey (Inventor); Bryant, Robert G. (Inventor); Park, Cheol (Inventor); Lowther, Sharon E. (Inventor)

2017-01-01

Some implementations provide a composite material that includes a first material and a second material. In some implementations, the composite material is a metamaterial. The first material includes a chiral polymer (e.g., crystalline chiral helical polymer, poly-.gamma.-benzyl-L-glutamate (PBLG), poly-L-lactic acid (PLA), polypeptide, and/or polyacetylene). The second material is within the chiral polymer. The first material and the second material are configured to provide an effective index of refraction value for the composite material of 1 or less. In some implementations, the effective index of refraction value for the composite material is negative. In some implementations, the effective index of refraction value for the composite material of 1 or less is at least in a wavelength of one of at least a visible spectrum, an infrared spectrum, a microwave spectrum, and/or an ultraviolet spectrum.

System and method for producing metallic iron

DOEpatents

Englund, David J.; Schlichting, Mark; Meehan, John; Crouch, Jeremiah; Wilson, Logan

2014-07-29

A method of production of metallic iron nodules comprises assembling a hearth furnace having a moveable hearth comprising refractory material and having a conversion zone and a fusion zone, providing a hearth material layer comprising carbonaceous material on the refractory material, providing a layer of reducible material comprising and iron bearing material arranged in discrete portions over at least a portion of the hearth material layer, delivering oxygen gas into the hearth furnace to a ratio of at least 0.8:1 ponds of oxygen to pounds of iron in the reducible material to heat the conversion zone to a temperature sufficient to at least partially reduce the reducible material and to heat the fusion zone to a temperature sufficient to at least partially reduce the reducible material, and heating the reducible material to form one or more metallic iron nodules and slag.

77 FR 60935 - Hazardous Materials: Minor Editorial Corrections and Clarifications (RRR)

Federal Register 2010, 2011, 2012, 2013, 2014

2012-10-05

... DEPARTMENT OF TRANSPORTATION Pipeline and Hazardous Materials Safety Administration 49 CFR Parts... Materials: Minor Editorial Corrections and Clarifications (RRR) AGENCY: Pipeline and Hazardous Materials... material. (a) * * * (3) * * * Source and name of material 49 CFR reference * * * * * * * ISO 9809-1: Gas...

42 CFR 423.2260 - Definitions concerning marketing materials.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 42 Public Health 3 2012-10-01 2012-10-01 false Definitions concerning marketing materials. 423... Part D Marketing Requirements § 423.2260 Definitions concerning marketing materials. As used in this subpart— Marketing materials. Marketing Materials include any informational materials targeted to Medicare...

42 CFR 423.2260 - Definitions concerning marketing materials.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 42 Public Health 3 2013-10-01 2013-10-01 false Definitions concerning marketing materials. 423... Part D Marketing Requirements § 423.2260 Definitions concerning marketing materials. As used in this subpart— Marketing materials. Marketing Materials include any informational materials targeted to Medicare...

42 CFR 423.2260 - Definitions concerning marketing materials.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 42 Public Health 3 2014-10-01 2014-10-01 false Definitions concerning marketing materials. 423... Part D Marketing Requirements § 423.2260 Definitions concerning marketing materials. As used in this subpart— Marketing materials. Marketing Materials include any informational materials targeted to Medicare...

Municipal waste processing apparatus

DOEpatents

Mayberry, John L.

1989-01-01

Municipal waste materials are processed by crushing the materials so that pieces of noncombustible material are smaller than a selected size and pieces of combustible material are larger than the selected size. The crushed materials are placed on a vibrating mesh screen conveyor belt having openings which pass the smaller, noncombustible pieces of material, but do not pass the larger, combustible pieces of material. Consecutive conveyors may be connected by an intermediate vibratory plate. An air knife can be used to further separate materials based on weight.

Damascene fabrication of nonplanar microcoils

DOEpatents

Adams, David P.; Vasile, Michael J.

2003-06-17

A process for fabricating coils using a Damascene process uses a curved substrate having a surface extending along and about an axis made of a first material. A groove is formed in the curved surface along and around said axis, and the groove is filled with a second material that is different from the first material to form a coil of second material in said first material. Excess second material is then removed from the surface of the first material, leaving the coil of second material in the groove.

Gas storage materials, including hydrogen storage materials

DOEpatents

Mohtadi, Rana F; Wicks, George G; Heung, Leung K; Nakamura, Kenji

2013-02-19

A material for the storage and release of gases comprises a plurality of hollow elements, each hollow element comprising a porous wall enclosing an interior cavity, the interior cavity including structures of a solid-state storage material. In particular examples, the storage material is a hydrogen storage material such as a solid state hydride. An improved method for forming such materials includes the solution diffusion of a storage material solution through a porous wall of a hollow element into an interior cavity.

Gas storage materials, including hydrogen storage materials

DOEpatents

Mohtadi, Rana F; Wicks, George G; Heung, Leung K; Nakamura, Kenji

2014-11-25

A material for the storage and release of gases comprises a plurality of hollow elements, each hollow element comprising a porous wall enclosing an interior cavity, the interior cavity including structures of a solid-state storage material. In particular examples, the storage material is a hydrogen storage material, such as a solid state hydride. An improved method for forming such materials includes the solution diffusion of a storage material solution through a porous wall of a hollow element into an interior cavity.

Article and process for producing an article

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lacy, Benjamin Paul; Jacala, Ariel Caesar Prepena; Kottilingam, Srikanth Chandrudu

An article and a process of producing an article are provided. The article includes a base material, a cooling feature arrangement positioned on the base material, the cooling feature arrangement including an additive-structured material, and a cover material. The cooling feature arrangement is between the base material and the cover material. The process of producing the article includes manufacturing a cooling feature arrangement by an additive manufacturing technique, and then positioning the cooling feature arrangement between a base material and a cover material.

Materials Requirements for Advanced Propulsion Systems

NASA Technical Reports Server (NTRS)

Whitaker, Ann F.; Cook, Mary Beth; Clinton, R. G., Jr.

2005-01-01

NASA's mission to "reach the Moon and Mars" will be obtained only if research begins now to develop materials with expanded capabilities to reduce mass, cost and risk to the program. Current materials cannot function satisfactorily in the deep space environments and do not meet the requirements of long term space propulsion concepts for manned missions. Directed research is needed to better understand materials behavior for optimizing their processing. This research, generating a deeper understanding of material behavior, can lead to enhanced implementation of materials for future exploration vehicles. materials providing new approaches for manufacture and new options for In response to this need for more robust materials, NASA's Exploration Systems Mission Directorate (ESMD) has established a strategic research initiative dedicated to materials development supporting NASA's space propulsion needs. The Advanced Materials for Exploration (AME) element directs basic and applied research to understand material behavior and develop improved materials allowing propulsion systems to operate beyond their current limitations. This paper will discuss the approach used to direct the path of strategic research for advanced materials to ensure that the research is indeed supportive of NASA's future missions to the moon, Mars, and beyond.

Materials Informatics: Statistical Modeling in Material Science.

PubMed

Yosipof, Abraham; Shimanovich, Klimentiy; Senderowitz, Hanoch

2016-12-01

Material informatics is engaged with the application of informatic principles to materials science in order to assist in the discovery and development of new materials. Central to the field is the application of data mining techniques and in particular machine learning approaches, often referred to as Quantitative Structure Activity Relationship (QSAR) modeling, to derive predictive models for a variety of materials-related "activities". Such models can accelerate the development of new materials with favorable properties and provide insight into the factors governing these properties. Here we provide a comparison between medicinal chemistry/drug design and materials-related QSAR modeling and highlight the importance of developing new, materials-specific descriptors. We survey some of the most recent QSAR models developed in materials science with focus on energetic materials and on solar cells. Finally we present new examples of material-informatic analyses of solar cells libraries produced from metal oxides using combinatorial material synthesis. Different analyses lead to interesting physical insights as well as to the design of new cells with potentially improved photovoltaic parameters. © 2016 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Magnetorheological materials, method for making, and applications thereof

DOEpatents

Shen, Rui; Yang, Hong; Shafrir, Shai N.; Miao, Chunlin; Wang, Mimi; Mici, Joni; Lambropoulos, John C.; Jacobs, Stephen D.

2014-08-19

A magnetorheological material comprises a magnetic particle and a ceramic material, wherein the magnetorheological material is in a dried form and further wherein a portion of the ceramic material is in the form of a nanocrystalline coating over the entire exterior surface of the magnetic particle and another portion of the ceramic material is in the form of a free nanocrystal. A magnetorheological material comprises a magnetic particle having a ceramic material coating over an external surface thereof as a result of a coating process, and a free nanocrystal of the ceramic material in the form of a residual by-product of the coating process. A sol-gel process for making a magnetorheological product comprises providing a sol of a desired ceramic coating material; combining a desired quantity of carbonyl iron (CI) particles with the sol to coat the CI particles with the ceramic coating material; creating a resulting quantity of nanocrystalline ceramic material-coated CI particles and a quantity of free nanocrystals of the ceramic material; and, drying the resulting quantity of coated CI particles and free nanocrystals to a moisture content equal to or less than 2 wt %.

Hazardous Material Packaging and Transportation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hypes, Philip A.

2016-02-04

This is a student training course. Some course objectives are to: recognize and use standard international and US customary units to describe activities and exposure rates associated with radioactive material; determine whether a quantity of a single radionuclide meets the definition of a class 7 (radioactive) material; determine, for a given single radionuclide, the shipping quantity activity limits per 49 Code of Federal Regulations (CFR) 173.435; determine the appropriate radioactive material hazard class proper shipping name for a given material; determine when a single radionuclide meets the DOT definition of a hazardous substance; determine the appropriate packaging required for amore » given radioactive material; identify the markings to be placed on a package of radioactive material; determine the label(s) to apply to a given radioactive material package; identify the entry requirements for radioactive material labels; determine the proper placement for radioactive material label(s); identify the shipping paper entry requirements for radioactive material; select the appropriate placards for a given radioactive material shipment or vehicle load; and identify allowable transport limits and unacceptable transport conditions for radioactive material.« less

Molecular level studies on interfacial hydration of zwitterionic and other antifouling polymers in situ.

PubMed

Leng, Chuan; Sun, Shuwen; Zhang, Kexin; Jiang, Shaoyi; Chen, Zhan

2016-08-01

Antifouling polymers have wide applications in biomedical engineering and marine industry. Recently, zwitterionic materials have been reported as promising candidates for antifouling applications, while strong hydration is believed to be the key antifouling mechanism. Zwitterionic materials can be designed with various molecular structures, which affect their hydration and antifouling performance. Although strong hydration has been proposed to occur at the material surfaces, probing the solid material/water interfaces is challenging with traditional analytical techniques. Here in this review, we will review our studies on surface hydration of zwitterionic materials and other antifouling materials by using sum frequency generation (SFG) vibrational spectroscopy, which provides molecular understanding of the water structures at various material surfaces. The materials studied include zwitterionic polymer brushes with different molecular structures, amphiphilic polymers with zwitterionic groups, uncharged hydrophilic polymer brushes, amphiphilic polypeptoids, and widely used antifouling material poly(ethylene glycol). We will compare the differences among zwitterionic materials with various molecular structures as well as the differences between antifouling materials and fouling surfaces of control samples. We will also discuss the effects of pH and biological molecules like proteins on the surface hydration of the zwitterionic materials. Using SFG spectroscopy, we have measured the hydration layers of antifouling materials and found that strong hydrogen bonds are key to the formation of strong hydration layers preventing protein fouling at the polymer interfaces. Antifouling polymers have wide applications in biomedical engineering and marine industry. Recently, zwitterionic materials have been reported as promising candidates for antifouling applications, while strong hydration is believed to be the key antifouling mechanism. However, zwitterionic materials can be designed with various molecular structures, which affect their hydration and antifouling performance. Moreover, although strong hydration has been proposed to occur at the material surfaces, probing the solid material/water interfaces is challenging with traditional analytical techniques. Here in this manuscript, we will review our studies on surface hydration of zwitterionic materials and other antifouling materials by using sum frequency generation (SFG) vibrational spectroscopy, which provides molecular understanding of the water structures at various material surfaces. The materials studied include zwitterionic polymer brushes with different molecular structures, amphiphilic polymers with zwitterionic groups, uncharged hydrophilic polymer brushes, amphiphilic polypeptoids, and widely used antifouling material poly(ethylene glycol). We will compare the differences among zwitterionic materials with various molecular structures as well as the differences between antifouling materials and fouling surfaces of control samples. We will also discuss the effects of pH and biological molecules like proteins on the surface hydration of the zwitterionic materials. All the SFG results indicate that strongly hydrogen-bonded water at the materials' surfaces (strong surface hydration) is closely correlated to the good antifouling properties of the materials. This review will be widely interested by readers of Acta Biomaterialia and will impact many different research fields in chemistry, materials, engineering, and beyond. Copyright © 2016 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.

Cybermaterials: materials by design and accelerated insertion of materials

NASA Astrophysics Data System (ADS)

Xiong, Wei; Olson, Gregory B.

2016-02-01

Cybermaterials innovation entails an integration of Materials by Design and accelerated insertion of materials (AIM), which transfers studio ideation into industrial manufacturing. By assembling a hierarchical architecture of integrated computational materials design (ICMD) based on materials genomic fundamental databases, the ICMD mechanistic design models accelerate innovation. We here review progress in the development of linkage models of the process-structure-property-performance paradigm, as well as related design accelerating tools. Extending the materials development capability based on phase-level structural control requires more fundamental investment at the level of the Materials Genome, with focus on improving applicable parametric design models and constructing high-quality databases. Future opportunities in materials genomic research serving both Materials by Design and AIM are addressed.

2004 research briefs :Materials and Process Sciences Center.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cieslak, Michael J.

2004-01-01

This report is the latest in a continuing series that highlights the recent technical accomplishments associated with the work being performed within the Materials and Process Sciences Center. Our research and development activities primarily address the materials-engineering needs of Sandia's Nuclear-Weapons (NW) program. In addition, we have significant efforts that support programs managed by the other laboratory business units. Our wide range of activities occurs within six thematic areas: Materials Aging and Reliability, Scientifically Engineered Materials, Materials Processing, Materials Characterization, Materials for Microsystems, and Materials Modeling and Simulation. We believe these highlights collectively demonstrate the importance that a strong materials-sciencemore » base has on the ultimate success of the NW program and the overall DOE technology portfolio.« less

Pressure induced swelling in microporous materials

DOEpatents

Vogt, Thomas; Hriljac, Joseph A.; Lee, Yongjae

2006-07-11

A method for capturing specified materials which includes contacting a microporous material with a hydrostatic fluid having at least one specified material carried therein, under pressure which structurally distorts the lattice sufficiently to permit entry of the at least one specified material. The microporous material is capable of undergoing a temporary structural distortion which alters resting lattice dimensions under increased ambient pressure and at least partially returning to rest lattice dimensions when returned to ambient pressure. The pressure of the fluid is then reduced to permit return to at least partial resting lattice dimension while the at least one specified material is therein. By this method, at least one specified material is captured in the microporous material to form a modified microporous material.

Electrode materials

DOEpatents

Amine, Khalil; Abouimrane, Ali; Belharouak, Ilias

2017-01-31

A process for forming a surface-treatment layer on an electroactive material includes heating the electroactive material and exposing the electroactive material to a reducing gas to form a surface-treatment layer on the electroactive material, where the surface-treatment layer is a layer of partial reduction of the electroactive material.

14 CFR 25.856 - Thermal/Acoustic insulation materials.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 14 Aeronautics and Space 1 2010-01-01 2010-01-01 false Thermal/Acoustic insulation materials. 25....856 Thermal/Acoustic insulation materials. (a) Thermal/acoustic insulation material installed in the.../acoustic insulation materials (including the means of fastening the materials to the fuselage) installed in...

THE EFFECT OF VENTILATION ON EMISSION RATES OF WOOD FINISHING MATERIALS

EPA Science Inventory

The rate of emission of organic compounds from building materials varies according to: type of material, material loading (area of material/volume of room), compound emitted, temperature, humidity, and ventilation rate. For some compounds and materials (e.g., formaldehyde from pa...

48 CFR 52.211-5 - Material Requirements.

Code of Federal Regulations, 2010 CFR

2010-10-01

... materials and by-products generated from, and reused within, an original manufacturing process; provided... readjustments and material replacement. Recovered material means waste materials and by-products recovered or diverted from solid waste, but the term does not include those materials and by-products generated from...

Composite solid-state scintillators for neutron detection

DOEpatents

Dai, Sheng; Im, Hee-Jung; Pawel, Michelle D.

2006-09-12

Applicant's present invention is a composite scintillator for neutron detection comprising a matrix material fabricated from an inorganic sol-gel precursor solution homogeneously doped with a liquid scintillating material and a neutron absorbing material. The neutron absorbing material yields at least one of an electron, a proton, a triton, an alpha particle or a fission fragment when the neutron absorbing material absorbs a neutron. The composite scintillator further comprises a liquid scintillating material in a self-assembled micelle formation homogeneously doped in the matrix material through the formation of surfactant-silica composites. The scintillating material is provided to scintillate when traversed by at least one of an electron, a proton, a triton, an alpha particle or a fission fragment. The scintillating material is configured such that the matrix material surrounds the micelle formation of the scintillating material. The composite scintillator is fabricated and applied as a thin film on substrate surfaces, a coating on optical fibers or as a glass material.

Antithrombotic Protein Filter Composed of Hybrid Tissue-Fabric Material has a Long Lifetime.

PubMed

Inoue, Yusuke; Yokota, Tomoyuki; Sekitani, Tsuyoshi; Kaneko, Akiko; Woo, Taeseong; Kobayashi, Shingo; Shibuya, Tomokazu; Tanaka, Masaru; Kosukegawa, Hiroyuki; Saito, Itsuro; Isoyama, Takashi; Abe, Yusuke; Yambe, Tomoyuki; Someya, Takao; Sekino, Masaki

2017-05-01

There are recent reports of hybrid tissue-fabric materials with good performance-high biocompatibility and high mechanical strength. In this study, we demonstrate the capability of a hybrid material as a long-term filter for blood proteins. Polyester fabrics were implanted into rats to fabricate hybrid tissue-fabric material sheets. The hybrid materials comprised biological tissue grown on the fabric. The materials were extracted from the rat's body, approximately 100 days post-implantation. The tissues were decellularized to prevent immunological rejection. An antithrombogenicity test was performed by dropping blood onto the hybrid material surface. The hybrid material showed lesser blood coagulation than polysulfone and cellulose. Blood plasma was filtered using the hybrid material to evaluate the protein removal percentage and the lifetime of the hybrid material in vitro. The hybrid material showed a comparable performance to conventional filters for protein removal. Moreover, the hybrid material could work as a protein filter for 1 month, which is six times the lifetime of polysulfone.

Combinatorial materials approach to accelerate materials discovery for transportation (Conference Presentation)

NASA Astrophysics Data System (ADS)

Tong, Wei

2017-04-01

Combinatorial material research offers fast and efficient solutions to identify promising and advanced materials. It has revolutionized the pharmaceutical industry and now is being applied to accelerate the discovery of other new compounds, e.g. superconductors, luminescent materials, catalysts etc. Differing from the traditional trial-and-error process, this approach allows for the synthesis of a large number of compositionally diverse compounds by varying the combinations of the components and adjusting the ratios. It largely reduces the cost of single-sample synthesis/characterization, along with the turnaround time in the material discovery process, therefore, could dramatically change the existing paradigm for discovering and commercializing new materials. This talk outlines the use of combinatorial materials approach in the material discovery in transportation sector. It covers the general introduction to the combinatorial material concept, state of art for its application in energy-related research. At the end, LBNL capabilities in combinatorial materials synthesis and high throughput characterization that are applicable for material discovery research will be highlighted.

Technology assessment of solar-energy systems. Materials resource and hazardous materials impacts of solar deployment

NASA Astrophysics Data System (ADS)

Schiffman, Y. M.; Tahami, J. E.

1982-04-01

The materials-resource and hazardous-materials impacts were determined by examining the type and quantity of materials used in the manufacture, construction, installation, operation and maintenance of solar systems. The materials requirements were compared with US materials supply and demand data to determine if potential problems exist in terms of future availability of domestic supply and increased dependence on foreign sources of supply. Hazardous materials were evaluated in terms of public and occupational health hazards and explosive and fire hazards. It is concluded that: although large amounts of materials would be required, the US had sufficient industrial capacity to produce those materials; (2) postulated growth in solar technology deployment during the period 1995-2000 could cause some production shortfalls in the steel and copper industry; the U.S. could increase its import reliance for certain materials such as silver, iron ore, and copper; however, shifts to other materials such as aluminum and polyvinylchloride could alleviate some of these problems.

Low resistance thin film organic solar cell electrodes

DOEpatents

Forrest, Stephen [Princeton, NJ; Xue, Jiangeng [Piscataway, NJ

2008-01-01

A method which lower the series resistance of photosensitive devices includes providing a transparent film of a first electrically conductive material arranged on a transparent substrate; depositing and patterning a mask over the first electrically conductive material, such that openings in the mask have sloping sides which narrow approaching the substrate; depositing a second electrically conductive material directly onto the first electrically conductive material exposed in the openings of the mask, at least partially filling the openings; stripping the mask, leaving behind reentrant structures of the second electrically conductive material which were formed by the deposits in the openings of the mask; after stripping the mask, depositing a first organic material onto the first electrically conductive material in between the reentrant structures; and directionally depositing a third electrically conductive material over the first organic material deposited in between the reentrant structures, edges of the reentrant structures aligning deposition so that the third electrically conductive material does not directly contact the first electrically conductive material, and does not directly contact the second electrically conductive material.

Purification of metal-organic framework materials

DOEpatents

Farha, Omar K.; Hupp, Joseph T.

2012-12-04

A method of purification of a solid mixture of a metal-organic framework (MOF) material and an unwanted second material by disposing the solid mixture in a liquid separation medium having a density that lies between those of the wanted MOF material and the unwanted material, whereby the solid mixture separates by density differences into a fraction of wanted MOF material and another fraction of unwanted material.

Magnetic Field-Induced Phase Transformation in Magnetic Shape Memory Alloys with High Actuation Stress and Work Output

DTIC Science & Technology

2010-05-03

Mechanisms for Advanced Properties in Phase Transforming Materials , Materials Science & Technology 2009 Conference, October 25-29, 2009, Pittsburgh, PA...Advanced Properties in Phase Transforming Materials , Materials Science & Technology 2009 Conference, October 25-29, 2009, Pittsburgh, PA, 2009. 11...observed materials behavior. Indeed, measured materials properties were found not to be the exact indication of the materials real response

Purification of metal-organic framework materials

DOEpatents

Farha, Omar K.; Hupp, Joseph T.

2015-06-30

A method of purification of a solid mixture of a metal-organic framework (MOF) material and an unwanted second material by disposing the solid mixture in a liquid separation medium having a density that lies between those of the wanted MOF material and the unwanted material, whereby the solid mixture separates by density differences into a fraction of wanted MOF material and another fraction of unwanted material.

Types of architectural structures and the use of smart materials

NASA Astrophysics Data System (ADS)

Tavşan, Cengiz; Sipahi, Serkan

2017-07-01

The developments in technology following the industrial revolution had their share of impact on both construction techniques, and material technologies. The change in the materials used by the construction industry brought along numerous innovations, which, in turn, took on an autonomous trend of development given the rise of nano-tech materials. Today, nano-tech materials are used extensively in numerous construction categories. Nano-tech materials, in general, are characterized by their reactionary nature, with the intent of repeating the reactions again and again under certain conditions. That is why nano-tech materials are often called smart materials. In construction industry, smart materials are categorized under 4 major perspectives: Shape-shifting smart materials, power generating smart materials, self-maintenance smart materials, and smart materials providing a high level of insulation. In architecture, various categories of construction often tend to exhibit their own approaches to design, materials, and construction techniques. This is a direct consequence of the need for different solutions for different functions. In this context, the use of technological materials should lead to the use of a set of smart materials for a given category of structures, while another category utilizes yet another set. In the present study, the smart materials used in specific categories of structures were reviewed with reference to nano-tech practices implemented in Europe, with a view to try and reveal the changes in the use of smart materials with reference to categories of structures. The study entails a discussion to test the hypothesis that nano-tech materials vary with reference to structure categories, on the basis of 18 examples from various structure categories, built by the construction firms with the highest level of potential in terms of doing business in Europe. The study comprises 3 major sections: The first section reiterates what the literature has to say about smart materials; the second discusses the types and characteristics of smart materials over the tables detailing their utilization and functions in the structures included in the set of examples. The final section of the study, on the other hand, elaborates on the findings, discussing them with reference to the types of structures.

Sorting it out: bedding particle size and nesting material processing method affect nest complexity.

PubMed

Robinson-Junker, Amy; Morin, Amelia; Pritchett-Corning, Kathleen; Gaskill, Brianna N

2017-04-01

As part of routine husbandry, an increasing number of laboratory mice receive nesting material in addition to standard bedding material in their cages. Nesting material improves health outcomes and physiological performance in mice that receive it. Providing usable nesting material uniformly and efficiently to various strains of mice remains a challenge. The aim of this study was to determine how bedding particle size, method of nesting material delivery, and processing of the nesting material before delivery affected nest building in mice of strong (BALB/cAnNCrl) and weak (C3H/HeNCrl) gathering abilities. Our data suggest that processing nesting material through a grinder in conjunction with bedding material, although convenient for provision of bedding with nesting material 'built-in', negatively affects the integrity of the nesting material and subsequent nest-building outcomes. We also found that C3H mice, previously thought to be poor nest builders, built similarly scored nests to those of BALB/c mice when provided with unprocessed nesting material. This was true even when nesting material was mixed into the bedding substrate. We also observed that when nesting material was mixed into the bedding substrate, mice of both strains would sort their bedding by particle size more often than if it were not mixed in. Our findings support the utility of the practice of distributing nesting material mixed in with bedding substrate, but not that of processing the nesting material with the bedding in order to mix them.

Method of making AlInSb by metal-organic chemical vapor deposition

DOEpatents

Biefeld, Robert M.; Allerman, Andrew A.; Baucom, Kevin C.

2000-01-01

A method for producing aluminum-indium-antimony materials by metal-organic chemical vapor deposition (MOCVD). This invention provides a method of producing Al.sub.X In.sub.1-x Sb crystalline materials by MOCVD wherein an Al source material, an In source material and an Sb source material are supplied as a gas to a heated substrate in a chamber, said Al source material, In source material, and Sb source material decomposing at least partially below 525.degree. C. to produce Al.sub.x In.sub.1-x Sb crystalline materials wherein x is greater than 0.002 and less than one.

Low-mass materials and vertex detector systems

DOE PAGES

Cooper, William E.

2014-01-01

Physics requirements set the material budget and the precision and stability necessary in low-mass vertex detector systems. Operational considerations, along with physics requirements, set the operating environment to be provided and determine the heat to be removed. Representative materials for fulfilling those requirements are described and properties of the materials are tabulated. A figure of merit is proposed to aid in material selection. Multi-layer structures are examined as a method to allow material to be used effectively, thereby reducing material contributions. Lastly, comments are made on future directions to be considered in using present materials effectively and in developing newmore » materials.« less

Augmented shock wave fracture/severance of materials

NASA Technical Reports Server (NTRS)

Schimmel, Morry L. (Inventor); Bement, Laurence J. (Inventor)

1995-01-01

The present invention related generally to severing materials, and more particularly to severing or weakening materials through explosively induced, augmented shock waves. Explosive cords are placed in grooves on the upper surface of the material to be severed or weakened. The explosive cords are initiated simultaneously to introduce explosive shock waves into the material. These shock waves progress toward the centerline between the explosive cords and the lower surface of the material. Intersecting and reflected waves produce a rarefaction zone on the centerline to fail the material in tension. A groove may also be cut in the lower surface of the material to aid in severing or weakening the material.

Rheology of Coating Materials and Their Coating Characteristics

NASA Astrophysics Data System (ADS)

Grabsch, C.; Grüner, S.; Otto, F.; Sommer, K.

2008-07-01

Lots of particles used in the pharmaceutical and the food industry are coated to protect the core material. But almost no investigations about the coating material behavior do exist. In this study the focus was on the rheological material properties of fat based coating materials. Rotational shear experiments to determine the viscosity of a material were compared to oscillatory shear tests to get information about the vicoelastic behavior of the coating materials. At the liquid state the viscosity and the viscoelastic properties showed a good analogy. The viscoelastic properties of the solid coating materials yielded differences between materials that have the same properties at the liquid state.

Embedded arrays of vertically aligned carbon nanotube carpets and methods for making them

DOEpatents

Kim, Myung Jong; Nicholas, Nolan Walker; Kittrell, W. Carter; Schmidt, Howard K.

2015-06-30

According to some embodiments, the present invention provides a system and method for supporting a carbon nanotube array that involve an entangled carbon nanotube mat integral with the array, where the mat is embedded in an embedding material. The embedding material may be depositable on a carbon nanotube. A depositable material may be metallic or nonmetallic. The embedding material may be an adhesive material. The adhesive material may optionally be mixed with a metal powder. The embedding material may be supported by a substrate or self-supportive. The embedding material may be conductive or nonconductive. The system and method provide superior mechanical and, when applicable, electrical, contact between the carbon nanotubes in the array and the embedding material. The optional use of a conductive material for the embedding material provides a mechanism useful for integration of carbon nanotube arrays into electronic devices.

Coincident site lattice-matched growth of semiconductors on substrates using compliant buffer layers

DOEpatents

Norman, Andrew

2016-08-23

A method of producing semiconductor materials and devices that incorporate the semiconductor materials are provided. In particular, a method is provided of producing a semiconductor material, such as a III-V semiconductor, on a silicon substrate using a compliant buffer layer, and devices such as photovoltaic cells that incorporate the semiconductor materials. The compliant buffer material and semiconductor materials may be deposited using coincident site lattice-matching epitaxy, resulting in a close degree of lattice matching between the substrate material and deposited material for a wide variety of material compositions. The coincident site lattice matching epitaxial process, as well as the use of a ductile buffer material, reduce the internal stresses and associated crystal defects within the deposited semiconductor materials fabricated using the disclosed method. As a result, the semiconductor devices provided herein possess enhanced performance characteristics due to a relatively low density of crystal defects.

The Materials Commons: A Collaboration Platform and Information Repository for the Global Materials Community

NASA Astrophysics Data System (ADS)

Puchala, Brian; Tarcea, Glenn; Marquis, Emmanuelle. A.; Hedstrom, Margaret; Jagadish, H. V.; Allison, John E.

2016-08-01

Accelerating the pace of materials discovery and development requires new approaches and means of collaborating and sharing information. To address this need, we are developing the Materials Commons, a collaboration platform and information repository for use by the structural materials community. The Materials Commons has been designed to be a continuous, seamless part of the scientific workflow process. Researchers upload the results of experiments and computations as they are performed, automatically where possible, along with the provenance information describing the experimental and computational processes. The Materials Commons website provides an easy-to-use interface for uploading and downloading data and data provenance, as well as for searching and sharing data. This paper provides an overview of the Materials Commons. Concepts are also outlined for integrating the Materials Commons with the broader Materials Information Infrastructure that is evolving to support the Materials Genome Initiative.

Strain-Detecting Composite Materials

NASA Technical Reports Server (NTRS)

Wallace, Terryl A. (Inventor); Smith, Stephen W. (Inventor); Piascik, Robert S. (Inventor); Horne, Michael R. (Inventor); Messick, Peter L. (Inventor); Alexa, Joel A. (Inventor); Glaessgen, Edward H. (Inventor); Hailer, Benjamin T. (Inventor)

2016-01-01

A composite material includes a structural material and a shape-memory alloy embedded in the structural material. The shape-memory alloy changes crystallographic phase from austenite to martensite in response to a predefined critical macroscopic average strain of the composite material. In a second embodiment, the composite material includes a plurality of particles of a ferromagnetic shape-memory alloy embedded in the structural material. The ferromagnetic shape-memory alloy changes crystallographic phase from austenite to martensite and changes magnetic phase in response to the predefined critical macroscopic average strain of the composite material. A method of forming a composite material for sensing the predefined critical macroscopic average strain includes providing the shape-memory alloy having an austenite crystallographic phase, changing a size and shape of the shape-memory alloy to thereby form a plurality of particles, and combining the structural material and the particles at a temperature of from about 100-700.degree. C. to form the composite material.

Preparation and characterization of phase transition/graphite foam composite materials.

PubMed

Yu, Jia; Tang, ChenLong; Yu, ZhiChao

2016-07-04

Phase transition/graphite foam (PCM/GF) composite materials are a kind of composite materials that fill graphite foam with phase change materials. In this paper, graphite foam was prepared firstly by the soft template method, the heat conductivity of which at room temperature is 5.44 W/(m∙K). Then, four phase change materials including eicosane, acetamide, xylitol, and erythritol were chosen for filling into the prepared graphite foam to obtain PCM/GF composite materials. Among the four kinds of materials, erythritol composite material has the highest melting point (118.5°C) and the highest enthalpy of fusion (266.3J/g), weight loss ratios of xylitol composite material after ten cycles is the lowest (2.1%), the compressive strength of xylitol composite material is the highest (9.08 MPa) and that of eicosane composite material is the lowest (3.32 MPa).

Local doping of two-dimensional materials

DOEpatents

Wong, Dillon; Velasco, Jr, Jairo; Ju, Long; Kahn, Salman; Lee, Juwon; Germany, Chad E.; Zettl, Alexander K.; Wang, Feng; Crommie, Michael F.

2016-09-20

This disclosure provides systems, methods, and apparatus related to locally doping two-dimensional (2D) materials. In one aspect, an assembly including a substrate, a first insulator disposed on the substrate, a second insulator disposed on the first insulator, and a 2D material disposed on the second insulator is formed. A first voltage is applied between the 2D material and the substrate. With the first voltage applied between the 2D material and the substrate, a second voltage is applied between the 2D material and a probe positioned proximate the 2D material. The second voltage between the 2D material and the probe is removed. The first voltage between the 2D material and the substrate is removed. A portion of the 2D material proximate the probe when the second voltage was applied has a different electron density compared to a remainder of the 2D material.

Passive absolute age and temperature history sensor

DOEpatents

Robinson, Alex; Vianco, Paul T.

2015-11-10

A passive sensor for historic age and temperature sensing, including a first member formed of a first material, the first material being either a metal or a semiconductor material and a second member formed of a second material, the second material being either a metal or a semiconductor material. A surface of the second member is in contact with a surface of the first member such that, over time, the second material of the second member diffuses into the first material of the first member. The rate of diffusion for the second material to diffuse into the first material depends on a temperature of the passive sensor. One of the electrical conductance, the electrical capacitance, the electrical inductance, the optical transmission, the optical reflectance, or the crystalline structure of the passive sensor depends on the amount of the second material that has diffused into the first member.

Electrochromic projection and writing device

DOEpatents

Branz, Howard M.; Benson, David K.

2002-01-01

A display and projection apparatus includes an electrochromic material and a photoconductive material deposited in tandem used in conjunction with a light filtering means for filtering light transmitted through the electrochromic material. When an electric field is applied across the electrochromic material and the photoconductive material, light that is incident onto the photoconductive material through the surface of the projection apparatus causes the photoconductive material to conduct current locally in proportion to the amount of light incident on the photoconductive material. The flow of current causes the underlying portions of the electrochromic material to switch from an opaque state to a clear or transmissive state, thereby allowing back-light to propagate through the electrochromic material to create a visible image on the surface of the projection apparatus. Reversal of the electric field causes the electrochromic material to revert back to its opaque state, thereby blocking the transmission of back-light and effectively erasing the image from the surface of the projection apparatus.

Hybrid vapor phase-solution phase growth techniques for improved CZT(S,Se) photovoltaic device performance

DOEpatents

Chang, Liang-Yi; Gershon, Talia S.; Haight, Richard A.; Lee, Yun Seog

2016-12-27

A hybrid vapor phase-solution phase CZT(S,Se) growth technique is provided. In one aspect, a method of forming a kesterite absorber material on a substrate includes the steps of: depositing a layer of a first kesterite material on the substrate using a vapor phase deposition process, wherein the first kesterite material includes Cu, Zn, Sn, and at least one of S and Se; annealing the first kesterite material to crystallize the first kesterite material; and depositing a layer of a second kesterite material on a side of the first kesterite material opposite the substrate using a solution phase deposition process, wherein the second kesterite material includes Cu, Zn, Sn, and at least one of S and Se, wherein the first kesterite material and the second kesterite material form a multi-layer stack of the absorber material on the substrate. A photovoltaic device and method of formation thereof are also provided.

Materials discovery through crystal growth

NASA Astrophysics Data System (ADS)

zur Loye, Hans-Conrad

2016-04-01

The discovery of new materials and associated desirable properties has been a driving force behind chemical innovation for centuries. When we look at some of the many recent technological advances, and how widespread and significant their impact has been, we appreciate how much they have relied on new materials. The increase in hard drive storage capacity due to new giant magneto-resistive materials, the ever-shrinking cell phone due to improved microwave dielectric materials, the enhancement in lithium battery storage capacity due to new intercalation materials, or the improved capacitor due to new ferroelectric materials are all excellent examples. How were these materials discovered? While there is no single answer, in all cases there was a First-Material, the archetype in which the phenomenon was first observed, the one that led to further investigations and the subsequent preparation of improved 2nd or 3rd generation materials. It is this First-Material, the archetype, that was discovered - often via crystal growth.

Electrochemical catalyst recovery method

DOEpatents

Silva, L.J.; Bray, L.A.

1995-05-30

A method of recovering catalyst material from latent catalyst material solids includes: (a) combining latent catalyst material solids with a liquid acid anolyte solution and a redox material which is soluble in the acid anolyte solution to form a mixture; (b) electrochemically oxidizing the redox material within the mixture into a dissolved oxidant, the oxidant having a potential for oxidation which is effectively higher than that of the latent catalyst material; (c) reacting the oxidant with the latent catalyst material to oxidize the latent catalyst material into at least one oxidized catalyst species which is soluble within the mixture and to reduce the oxidant back into dissolved redox material; and (d) recovering catalyst material from the oxidized catalyst species of the mixture. The invention is expected to be particularly useful in recovering spent catalyst material from petroleum hydroprocessing reaction waste products having adhered sulfides, carbon, hydrocarbons, and undesired metals, and as well as in other industrial applications. 3 figs.

Electrochemical catalyst recovery method

DOEpatents

Silva, Laura J.; Bray, Lane A.

1995-01-01

A method of recovering catalyst material from latent catalyst material solids includes: a) combining latent catalyst material solids with a liquid acid anolyte solution and a redox material which is soluble in the acid anolyte solution to form a mixture; b) electrochemically oxidizing the redox material within the mixture into a dissolved oxidant, the oxidant having a potential for oxidation which is effectively higher than that of the latent catalyst material; c) reacting the oxidant with the latent catalyst material to oxidize the latent catalyst material into at least one oxidized catalyst species which is soluble within the mixture and to reduce the oxidant back into dissolved redox material; and d) recovering catalyst material from the oxidized catalyst species of the mixture. The invention is expected to be particularly useful in recovering spent catalyst material from petroleum hydroprocessing reaction waste products having adhered sulfides, carbon, hydrocarbons, and undesired metals, and as well as in other industrial applications.

46 CFR 148.300 - Radioactive materials.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 46 Shipping 5 2013-10-01 2013-10-01 false Radioactive materials. 148.300 Section 148.300 Shipping... MATERIALS THAT REQUIRE SPECIAL HANDLING Special Requirements for Certain Materials § 148.300 Radioactive materials. (a) Radioactive materials that may be stowed or transported in bulk are limited to those...

48 CFR 31.205-26 - Material costs.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 48 Federal Acquisition Regulations System 1 2014-10-01 2014-10-01 false Material costs. 31.205-26....205-26 Material costs. (a) Material costs include the costs of such items as raw materials, parts... material costs, the contractor shall consider reasonable overruns, spoilage, or defective work (unless...

48 CFR 31.205-26 - Material costs.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 48 Federal Acquisition Regulations System 1 2013-10-01 2013-10-01 false Material costs. 31.205-26....205-26 Material costs. (a) Material costs include the costs of such items as raw materials, parts... material costs, the contractor shall consider reasonable overruns, spoilage, or defective work (unless...

48 CFR 52.211-5 - Material Requirements.

Code of Federal Regulations, 2011 CFR

2011-10-01

... readjustments and material replacement. Recovered material means waste materials and by-products recovered or diverted from solid waste, but the term does not include those materials and by-products generated from... is, or with new technology will become, a source of raw materials. (b) Unless this contract otherwise...

48 CFR 252.223-7001 - Hazard warning labels.

Code of Federal Regulations, 2010 CFR

2010-10-01

... Hazardous Material Identification and Material Safety Data clause of this contract. (b) The Contractor shall label the item package (unit container) of any hazardous material to be delivered under this contract in... which hazardous material listed in the Hazardous Material Identification and Material Safety Data clause...

48 CFR 252.223-7001 - Hazard warning labels.

Code of Federal Regulations, 2013 CFR

2013-10-01

... Hazardous Material Identification and Material Safety Data clause of this contract. (b) The Contractor shall label the item package (unit container) of any hazardous material to be delivered under this contract in... which hazardous material listed in the Hazardous Material Identification and Material Safety Data clause...

48 CFR 252.223-7001 - Hazard warning labels.

Code of Federal Regulations, 2011 CFR

2011-10-01

... Hazardous Material Identification and Material Safety Data clause of this contract. (b) The Contractor shall label the item package (unit container) of any hazardous material to be delivered under this contract in... which hazardous material listed in the Hazardous Material Identification and Material Safety Data clause...

48 CFR 252.223-7001 - Hazard warning labels.

Code of Federal Regulations, 2012 CFR

2012-10-01

... Hazardous Material Identification and Material Safety Data clause of this contract. (b) The Contractor shall label the item package (unit container) of any hazardous material to be delivered under this contract in... which hazardous material listed in the Hazardous Material Identification and Material Safety Data clause...

48 CFR 252.223-7001 - Hazard warning labels.

Code of Federal Regulations, 2014 CFR

2014-10-01

... Hazardous Material Identification and Material Safety Data clause of this contract. (b) The Contractor shall label the item package (unit container) of any hazardous material to be delivered under this contract in... which hazardous material listed in the Hazardous Material Identification and Material Safety Data clause...

Materiomics: biological protein materials, from nano to macro

PubMed Central

Cranford, Steven; Buehler, Markus J

2010-01-01

Materiomics is an emerging field of science that provides a basis for multiscale material system characterization, inspired in part by natural, for example, protein-based materials. Here we outline the scope and explain the motivation of the field of materiomics, as well as demonstrate the benefits of a materiomic approach in the understanding of biological and natural materials as well as in the design of de novo materials. We discuss recent studies that exemplify the impact of materiomics – discovering Nature’s complexity through a materials science approach that merges concepts of material and structure throughout all scales and incorporates feedback loops that facilitate sensing and resulting structural changes at multiple scales. The development and application of materiomics is illustrated for the specific case of protein-based materials, which constitute the building blocks of a variety of biological systems such as tendon, bone, skin, spider silk, cells, and tissue, as well as natural composite material systems (a combination of protein-based and inorganic constituents) such as nacre and mollusk shells, and other natural multiscale systems such as cellulose-based plant and wood materials. An important trait of these materials is that they display distinctive hierarchical structures across multiple scales, where molecular details are exhibited in macroscale mechanical responses. Protein materials are intriguing examples of materials that balance multiple tasks, representing some of the most sustainable material solutions that integrate structure and function despite severe limitations in the quality and quantity of material building blocks. However, up until now, our attempts to analyze and replicate Nature’s materials have been hindered by our lack of fundamental understanding of these materials’ intricate hierarchical structures, scale-bridging mechanisms, and complex material components that bestow protein-based materials their unique properties. Recent advances in analytical tools and experimental methods allow a holistic view of such a hierarchical biological material system. The integration of these approaches and amalgamation of material properties at all scale levels to develop a complete description of a material system falls within the emerging field of materiomics. Materiomics is the result of the convergence of engineering and materials science with experimental and computational biology in the context of natural and synthetic materials. Through materiomics, fundamental advances in our understanding of structure–property–process relations of biological systems contribute to the mechanistic understanding of certain diseases and facilitate the development of novel biological, biologically inspired, and completely synthetic materials for applications in medicine (biomaterials), nanotechnology, and engineering. PMID:24198478

Phase change based cooling for high burst mode heat loads with temperature regulation above the phase change temperature

DOEpatents

The United States of America as represented by the United States Department of Energy

2009-12-15

An apparatus and method for transferring thermal energy from a heat load is disclosed. In particular, use of a phase change material and specific flow designs enables cooling with temperature regulation well above the fusion temperature of the phase change material for medium and high heat loads from devices operated intermittently (in burst mode). Exemplary heat loads include burst mode lasers and laser diodes, flight avionics, and high power space instruments. Thermal energy is transferred from the heat load to liquid phase change material from a phase change material reservoir. The liquid phase change material is split into two flows. Thermal energy is transferred from the first flow via a phase change material heat sink. The second flow bypasses the phase change material heat sink and joins with liquid phase change material exiting from the phase change material heat sink. The combined liquid phase change material is returned to the liquid phase change material reservoir. The ratio of bypass flow to flow into the phase change material heat sink can be varied to adjust the temperature of the liquid phase change material returned to the liquid phase change material reservoir. Varying the flowrate and temperature of the liquid phase change material presented to the heat load determines the magnitude of thermal energy transferred from the heat load.

Development of advanced high heat flux and plasma-facing materials

NASA Astrophysics Data System (ADS)

Linsmeier, Ch.; Rieth, M.; Aktaa, J.; Chikada, T.; Hoffmann, A.; Hoffmann, J.; Houben, A.; Kurishita, H.; Jin, X.; Li, M.; Litnovsky, A.; Matsuo, S.; von Müller, A.; Nikolic, V.; Palacios, T.; Pippan, R.; Qu, D.; Reiser, J.; Riesch, J.; Shikama, T.; Stieglitz, R.; Weber, T.; Wurster, S.; You, J.-H.; Zhou, Z.

2017-09-01

Plasma-facing materials and components in a fusion reactor are the interface between the plasma and the material part. The operational conditions in this environment are probably the most challenging parameters for any material: high power loads and large particle and neutron fluxes are simultaneously impinging at their surfaces. To realize fusion in a tokamak or stellarator reactor, given the proven geometries and technological solutions, requires an improvement of the thermo-mechanical capabilities of currently available materials. In its first part this article describes the requirements and needs for new, advanced materials for the plasma-facing components. Starting points are capabilities and limitations of tungsten-based alloys and structurally stabilized materials. Furthermore, material requirements from the fusion-specific loading scenarios of a divertor in a water-cooled configuration are described, defining directions for the material development. Finally, safety requirements for a fusion reactor with its specific accident scenarios and their potential environmental impact lead to the definition of inherently passive materials, avoiding release of radioactive material through intrinsic material properties. The second part of this article demonstrates current material development lines answering the fusion-specific requirements for high heat flux materials. New composite materials, in particular fiber-reinforced and laminated structures, as well as mechanically alloyed tungsten materials, allow the extension of the thermo-mechanical operation space towards regions of extreme steady-state and transient loads. Self-passivating tungsten alloys, demonstrating favorable tungsten-like plasma-wall interaction behavior under normal operation conditions, are an intrinsic solution to otherwise catastrophic consequences of loss-of-coolant and air ingress events in a fusion reactor. Permeation barrier layers avoid the escape of tritium into structural and cooling materials, thereby minimizing the release of tritium under normal operation conditions. Finally, solutions for the unique bonding requirements of dissimilar material used in a fusion reactor are demonstrated by describing the current status and prospects of functionally graded materials.

PREFACE 2nd International Conference on Materials Physics and Applications (JIPMA 2009/MATERIAUX 2009)

NASA Astrophysics Data System (ADS)

Cheikhrouhou, Abdelwaheb

2010-11-01

The 'Tunisian Materials Research Society: Tu-MRS' organized the International Days on Materials Physics and Applications 'JIPMA 2009' and the National Conference on Materials 'MATERIAUX 2009' in Gafsa (Tunisia) During the period 20-24 December 2009. The first International Days on Materials Physics and Applications 'JIPMA 2007' were organized in Annaba (Algeria) in November 2007 while the first National Conference on Materials 'MATERIAUX 2006' was organized in Douz (Tunisia) in December 2006. The 'JIPMA' conference series together with the 'MATERIAUX' intend to provide an excellent opportunity for international, Maghreb and Tunisian researchers to make their own works on materials known to a wider audience and to have discussions with other participants. This conference will also be an opportunity to exchange experiences, create and consolidate cooperation between different research structures in the Maghreb countries. This conference will equally promote research development, contribute to collaboration between universities and the socio-economical milieu. More than 300 senior researchers, Professors, PhD and Master students attended this conference from Tunisia, Algeria, Morocco, France, and Spain. Several researchers, engineers and managers from industrial firms also attended this scientific meeting. The conference consists of plenary and semi-plenary talks, oral contributions and poster presentations. The topics of the conference are: Nano-materials, nano-systems, thin films, surfaces and interfaces Multifonctional Materials, Magnetic Materials, Dielectric Materials, Superconducting Materials, Applications, ... Materials for Electronics, Informatics and Communications (Semi-conducting Materials, Electronic devices, Spintronic, ... Optoelectronic Materials, Sensors Ceramics, Glasses, Polymers, ... Natural Materials: Phosphates, Clay, ... Metallic Materials, alloys, ... Materials and Environment Materials and Energy Biomaterials Elaborating Methods and Characterization Techniques I want to thank the organizing committee and everyone else who participated in the organization of this meeting for their invaluable efforts to guarantee the full success of this conference. I want also to thank very warmly all the Scientific committee and all other reviewers for their hard work reviewing the submitted papers. Professor Abdelwaheb CHEIKHROUHOU Chairman of the Conference

76 FR 4276 - Hazardous Materials: Improving the Safety of Railroad Transportation of Hazardous Materials

Federal Register 2010, 2011, 2012, 2013, 2014

2011-01-25

...-0004] Hazardous Materials: Improving the Safety of Railroad Transportation of Hazardous Materials... hazardous materials program. DATES: The public meeting will be held on Tuesday, February 22, 2011, starting...--Hazardous Materials, FRA Office of Safety Assurance and Compliance, at least 4 business days before the date...

49 CFR 172.101 - Purpose and use of hazardous materials table.

Code of Federal Regulations, 2010 CFR

2010-10-01

... paragraph (c)(11): For the transportation of samples of self-reactive materials, organic peroxides... hazard class, the material is not a hazardous material. (13) Self-reactive materials and organic peroxides. A generic proper shipping name for a self-reactive material or an organic peroxide, as listed in...

Composites comprising biologically-synthesized nanomaterials

DOEpatents

Curran, Seamus; Dias, Sampath; Blau, Werner; Wang, Jun; Oremland, Ronald S; Baesman, Shaun

2013-04-30

The present disclosure describes composite materials containing a polymer material and a nanoscale material dispersed in the polymer material. The nanoscale materials may be biologically synthesized, such as tellurium nanorods synthesized by Bacillus selenitireducens. Composite materials of the present disclosure may have optical limiting properties and find use in optical limiting devices.

A Guide to Selecting Learning Resource Materials and Equipment.

ERIC Educational Resources Information Center

Dequin, Henry C.

The process is discussed and helpful publications are reviewed for the selection of materials in three areas--learning resource materials for library media programs, materials for special education, and equipment. In the first section, such factors as the need for suitable materials, the abundance of materials available, and financial limitations…

46 CFR 151.56-1 - Prohibited materials.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 46 Shipping 5 2010-10-01 2010-10-01 false Prohibited materials. 151.56-1 Section 151.56-1 Shipping... BULK LIQUID HAZARDOUS MATERIAL CARGOES Prohibited Materials of Construction § 151.56-1 Prohibited materials. When one of the following paragraphs of this section is referenced in table 151.05, the materials...

46 CFR 151.03-30 - Hazardous material.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 46 Shipping 5 2010-10-01 2010-10-01 false Hazardous material. 151.03-30 Section 151.03-30 Shipping... BULK LIQUID HAZARDOUS MATERIAL CARGOES Definitions § 151.03-30 Hazardous material. In this part hazardous material means a liquid material or substance that is— (a) Flammable or combustible; (b...

28 CFR 55.19 - Written materials.

Code of Federal Regulations, 2013 CFR

2013-07-01

... 28 Judicial Administration 2 2013-07-01 2013-07-01 false Written materials. 55.19 Section 55.19... RIGHTS ACT REGARDING LANGUAGE MINORITY GROUPS Minority Language Materials and Assistance § 55.19 Written materials. (a) Types of materials. It is the obligation of the jurisdiction to decide what materials must be...

46 CFR 151.56-1 - Prohibited materials.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 46 Shipping 5 2013-10-01 2013-10-01 false Prohibited materials. 151.56-1 Section 151.56-1 Shipping... BULK LIQUID HAZARDOUS MATERIAL CARGOES Prohibited Materials of Construction § 151.56-1 Prohibited materials. When one of the following paragraphs of this section is referenced in table 151.05, the materials...

28 CFR 55.19 - Written materials.

Code of Federal Regulations, 2014 CFR

2014-07-01

... 28 Judicial Administration 2 2014-07-01 2014-07-01 false Written materials. 55.19 Section 55.19... RIGHTS ACT REGARDING LANGUAGE MINORITY GROUPS Minority Language Materials and Assistance § 55.19 Written materials. (a) Types of materials. It is the obligation of the jurisdiction to decide what materials must be...

46 CFR 151.03-30 - Hazardous material.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 46 Shipping 5 2012-10-01 2012-10-01 false Hazardous material. 151.03-30 Section 151.03-30 Shipping... BULK LIQUID HAZARDOUS MATERIAL CARGOES Definitions § 151.03-30 Hazardous material. In this part hazardous material means a liquid material or substance that is— (a) Flammable or combustible; (b...

46 CFR 151.56-1 - Prohibited materials.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 46 Shipping 5 2012-10-01 2012-10-01 false Prohibited materials. 151.56-1 Section 151.56-1 Shipping... BULK LIQUID HAZARDOUS MATERIAL CARGOES Prohibited Materials of Construction § 151.56-1 Prohibited materials. When one of the following paragraphs of this section is referenced in table 151.05, the materials...

46 CFR 151.03-30 - Hazardous material.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 46 Shipping 5 2013-10-01 2013-10-01 false Hazardous material. 151.03-30 Section 151.03-30 Shipping... BULK LIQUID HAZARDOUS MATERIAL CARGOES Definitions § 151.03-30 Hazardous material. In this part hazardous material means a liquid material or substance that is— (a) Flammable or combustible; (b...

Aerogel/polymer composite materials

NASA Technical Reports Server (NTRS)

Williams, Martha K. (Inventor); Smith, Trent M. (Inventor); Fesmire, James E. (Inventor); Roberson, Luke B. (Inventor); Clayton, LaNetra M. (Inventor)

2010-01-01

The invention provides new composite materials containing aerogels blended with thermoplastic polymer materials at a weight ratio of aerogel to thermoplastic polymer of less than 20:100. The composite materials have improved thermal insulation ability. The composite materials also have better flexibility and less brittleness at low temperatures than the parent thermoplastic polymer materials.

Aerogel / Polymer Composite Materials

NASA Technical Reports Server (NTRS)

Smith, Trent M. (Inventor); Clayton, LaNetra M. (Inventor); Fesmire, James E. (Inventor); Williams, Martha K. (Inventor); Roberson, Luke B. (Inventor)

2017-01-01

The invention provides new composite materials containing aerogels blended with thermoplastic polymer materials at a weight ratio of aerogel to thermoplastic polymer of less than 20:100. The composite materials have improved thermal insulation ability. The composite materials also have better flexibility and less brittleness at low temperatures than the parent thermoplastic polymer materials.

10 CFR 74.51 - Nuclear material control and accounting for strategic special nuclear material.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 10 Energy 2 2012-01-01 2012-01-01 false Nuclear material control and accounting for strategic special nuclear material. 74.51 Section 74.51 Energy NUCLEAR REGULATORY COMMISSION (CONTINUED) MATERIAL CONTROL AND ACCOUNTING OF SPECIAL NUCLEAR MATERIAL Formula Quantities of Strategic Special Nuclear...

10 CFR 74.51 - Nuclear material control and accounting for strategic special nuclear material.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 10 Energy 2 2010-01-01 2010-01-01 false Nuclear material control and accounting for strategic special nuclear material. 74.51 Section 74.51 Energy NUCLEAR REGULATORY COMMISSION (CONTINUED) MATERIAL CONTROL AND ACCOUNTING OF SPECIAL NUCLEAR MATERIAL Formula Quantities of Strategic Special Nuclear...

10 CFR 74.51 - Nuclear material control and accounting for strategic special nuclear material.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 10 Energy 2 2013-01-01 2013-01-01 false Nuclear material control and accounting for strategic special nuclear material. 74.51 Section 74.51 Energy NUCLEAR REGULATORY COMMISSION (CONTINUED) MATERIAL CONTROL AND ACCOUNTING OF SPECIAL NUCLEAR MATERIAL Formula Quantities of Strategic Special Nuclear...

10 CFR 74.51 - Nuclear material control and accounting for strategic special nuclear material.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 10 Energy 2 2011-01-01 2011-01-01 false Nuclear material control and accounting for strategic special nuclear material. 74.51 Section 74.51 Energy NUCLEAR REGULATORY COMMISSION (CONTINUED) MATERIAL CONTROL AND ACCOUNTING OF SPECIAL NUCLEAR MATERIAL Formula Quantities of Strategic Special Nuclear...

10 CFR 74.51 - Nuclear material control and accounting for strategic special nuclear material.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 10 Energy 2 2014-01-01 2014-01-01 false Nuclear material control and accounting for strategic special nuclear material. 74.51 Section 74.51 Energy NUCLEAR REGULATORY COMMISSION (CONTINUED) MATERIAL CONTROL AND ACCOUNTING OF SPECIAL NUCLEAR MATERIAL Formula Quantities of Strategic Special Nuclear...

Method of making nanostructured glass-ceramic waste forms

DOEpatents

Gao, Huizhen; Wang, Yifeng; Rodriguez, Mark A.; Bencoe, Denise N.

2014-07-08

A waste form for and a method of rendering hazardous materials less dangerous is disclosed that includes fixing the hazardous material in nanopores of a nanoporous material, reacting the trapped hazardous material to render it less volatile/soluble, and vitrifying the nanoporous material containing the less volatile/soluble hazardous material.

High Performance High Temperature Thermoelectric Composites with Metallic Inclusions

NASA Technical Reports Server (NTRS)

Firdosy, Samad A. (Inventor); Kaner, Richard B. (Inventor); Ma, James M. (Inventor); Fleurial, Jean-Pierre (Inventor); Star, Kurt (Inventor); Bux, Sabah K. (Inventor); Ravi, Vilupanur A. (Inventor)

2017-01-01

The present invention provides a composite thermoelectric material. The composite thermoelectric material can include a semiconductor material comprising a rare earth metal. The atomic percent of the rare earth metal in the semiconductor material can be at least about 20%. The composite thermoelectric material can further include a metal forming metallic inclusions distributed throughout the semiconductor material. The present invention also provides a method of forming this composite thermoelectric material.

Plastic Recycling Experiments in Materials Education

NASA Technical Reports Server (NTRS)

Liu, Ping; Waskom, Tommy L.

1996-01-01

The objective of this project was to introduce a series of plastic recycling experiments to students in materials-related courses such as materials science, material technology and materials testing. With the plastic recycling experiments, students not only can learn the fundamentals of plastic processing and properties as in conventional materials courses, but also can be exposed to the issue of materials life cycle and the impact on society and environment.

Material Demand Studies: Materials Sorption of Vaporized Hydrogen Peroxide

DTIC Science & Technology

2010-06-01

SORPTION OF VAPORIZED HYDROGEN PEROXIDE Lawrence R. Procell Zoe A. Hess David G. Gehring Joseph T. Lynn Philip W. Bartram Teri Lalain RESEARCH AND...2010 2. REPORT TYPE Final 3. DATES COVERED (From - To) Nov 2003 - Jul 2005 4. TITLE AND SUBTITLE Material Demand Studies: Materials Sorption of...of office surfaces 33 \\i MATERIAL DEMAND STUDIES: MATERIALS SORPTION OF VAPORIZED HYDROGEN PEROXIDE 1. BACKGROUND The Material Demand effort was

Atomic Oxygen Exposure of Power System and other Spacecraft Materials: Results of the EOIM-3 Experiment

NASA Technical Reports Server (NTRS)

Morton, Thomas L.; Ferguson, Dale C.

1997-01-01

In order to test their reactivity with Atomic Oxygen, twenty five materials were flown on the EOIM-3 (Evaluation of Oxygen Interactions with Materials) portion of the STS-46 Mission. These materials include refractory metals, candidate insulation materials, candidate radiator coatings, and a selection of miscellaneous materials. This report documents the results of the pre- and post-flight analysis of these materials.

Chemical reactor and method for chemically converting a first material into a second material

DOEpatents

Kong, Peter C.

2008-04-08

A chemical reactor and method for converting a first material into a second material is disclosed and wherein the chemical reactor is provided with a feed stream of a first material which is to be converted into a second material; and wherein the first material is combusted in the chemical reactor to produce a combustion flame, and a resulting gas; and an electrical arc is provided which is passed through or superimposed upon the combustion flame and the resulting gas to facilitate the production of the second material.

Reclaiming metallic material from an article comprising a non-metallic friable substrate

DOEpatents

Bohland, John Raphael; Anisimov, Igor Ivanovich; Dapkus, Todd James; Sasala, Richard Anthony; Smigielski, Ken Alan; Kamm, Kristin Danielle

2000-01-01

A method for reclaiming a metallic material from a article including a non-metallic friable substrate. The method comprising crushing the article into a plurality of pieces. An acidic solution capable of dissolving the metallic material is provided dissolving the metallic material in the acidic material to form an etchant effluent. The etchant effluent is separated from the friable substrate. A precipitation agent, capable of precipitating the metallic material, is added to the etchant effluent to precipitate out the metallic material from the etchant effluent. The metallic material is then recovered.

Free-standing oxide superconducting articles

DOEpatents

Wu, X.D.; Muenchausen, R.E.

1993-12-14

A substrate-free, free-standing epitaxially oriented superconductive film including a layer of a template material and a layer of a ceramic superconducting material is provided together with a method of making such a substrate-free ceramic superconductive film by coating an etchable material with a template layer, coating the template layer with a layer of a ceramic superconductive material, coating the layer of ceramic superconductive material with a protective material, removing the etchable material by an appropriate means so that the etchable material is separated from a composite structure including the template layer.

Electroless atomic layer deposition

DOEpatents

Robinson, David Bruce; Cappillino, Patrick J.; Sheridan, Leah B.; Stickney, John L.; Benson, David M.

2017-10-31

A method of electroless atomic layer deposition is described. The method electrolessly generates a layer of sacrificial material on a surface of a first material. The method adds doses of a solution of a second material to the substrate. The method performs a galvanic exchange reaction to oxidize away the layer of the sacrificial material and deposit a layer of the second material on the surface of the first material. The method can be repeated for a plurality of iterations in order to deposit a desired thickness of the second material on the surface of the first material.

Chemical reactor for converting a first material into a second material

DOEpatents

Kong, Peter C

2012-10-16

A chemical reactor and method for converting a first material into a second material is disclosed and wherein the chemical reactor is provided with a feed stream of a first material which is to be converted into a second material; and wherein the first material is combusted in the chemical reactor to produce a combustion flame, and a resulting gas; and an electrical arc is provided which is passed through or superimposed upon the combustion flame and the resulting gas to facilitate the production of the second material.

Materials, critical materials and clean-energy technologies

NASA Astrophysics Data System (ADS)

Eggert, R.

2017-07-01

Modern engineered materials, components and systems depend on raw materials whose properties provide essential functionality to these technologies. Some of these raw materials are subject to supply-chain risks, and such materials are known as critical materials. This paper reviews corporate, national and world perspectives on material criticality. It then narrows its focus to studies that assess "what is critical" to clean-energy technologies. The focus on supply-chain risks is not meant to be alarmist but rather to encourage attention to monitoring these risks and pursuing technological innovation to mitigate the risks.

Nuclear reactor for breeding U.sup.233

DOEpatents

Bohanan, Charles S.; Jones, David H.; Raab, Jr., Harry F.; Radkowsky, Alvin

1976-01-01

A light-water-cooled nuclear reactor capable of breeding U.sup.233 for use in a light-water breeder reactor includes physically separated regions containing U.sup.235 fissile material and U.sup.238 fertile material and Th.sup.232 fertile material and Pu.sup.239 fissile material, if available. Preferably the U.sup.235 fissile material and U.sup.238 fertile material are contained in longitudinally movable seed regions and the Pu.sup.239 fissile material and Th.sup.232 fertile material are contained in blanket regions surrounding the seed regions.

Materials technology assessment for a 1050 K Stirling space engine design

NASA Technical Reports Server (NTRS)

Scheuermann, Coulson M.; Dreshfield, Robert L.; Gaydosh, Darrell J.; Kiser, James D.; Mackay, Rebecca A.; Mcdaniels, David L.; Petrasek, Donald W.; Vannucci, Raymond D.; Bowles, Kenneth J.; Watson, Gordon K.

1988-01-01

An assessment of materials technology and proposed materials selection was made for the 1050 K (superalloy) Stirling Space Engine design. The objectives of this assessment were to evaluate previously proposed materials selections, evaluate the current state-of-the-art materials, propose potential alternate materials selections and identify research and development efforts needed to provide materials that can meet the stringent system requirements. This assessment generally reaffirmed the choices made by the contractor. However, in many cases alternative choices were described and suggestions for needed materials and fabrication research and development were made.

Method for distributing chemicals through a fibrous material using low-headspace dielectric heating

DOEpatents

Banerjee, Sujit; Malcolm, Earl

2002-01-01

System and method for diffusing chemicals rapidly and evenly into and through fibrous material, such as wood. Chemicals are introduced into the fibrous material by applying the chemicals to the fibrous material. After treating the fibrous material with the chemicals, the fibrous material is maintained under low-headspace conditions. Thermal energy or dielectric heating, such as microwave or radio frequency energy, is applied to the fibrous material. As a result, the chemicals are able to distribute evenly and quickly throughout the fibrous material.

Fracture/Severance of Materials

NASA Technical Reports Server (NTRS)

Schimmel, Morry L. (Inventor); Bement, Laurence J. (Inventor); DuBrucq, Glenn F., Jr. (Inventor); Klein, Edward A. (Inventor)

1998-01-01

A method for severing or weakening materials is discussed. Explosive cords are placed in grooves on the upper surface of the material to be severed or weakened. The explosive cords are initiated simultaneously to introduce explosive shock waves into the material. These shock waves progress toward the centerline between the explosive cords and the lower surface of the material. Intersecting and reflected waves produce a rarefaction zone on the centerline to fail the material in tension. A groove may also be cut in the lower surface of the material to aid in severing or weakening the material.

Biological issues in materials science and engineering: Interdisciplinarity and the bio-materials paradigm

NASA Astrophysics Data System (ADS)

Murr, L. E.

2006-07-01

Biological systems and processes have had, and continue to have, important implications and applications in materials extraction, processing, and performance. This paper illustrates some interdisciplinary, biological issues in materials science and engineering. These include metal extraction involving bacterial catalysis, galvanic couples, bacterial-assisted corrosion and degradation of materials, biosorption and bioremediation of toxic and other heavy metals, metal and material implants and prostheses and related dental and medical biomaterials developments and applications, nanomaterials health benefits and toxicity issue, and biomimetics and biologically inspired materials developments. These and other examples provide compelling evidence and arguments for emphasizing biological sicences in materials science and engineering curricula and the implementation of a bio-materials paradigm to facilitate the emergence of innovative interdisciplinarity involving the biological sciences and materials sciences and engineering.

Application of materials database (MAT.DB.) to materials education

NASA Technical Reports Server (NTRS)

Liu, Ping; Waskom, Tommy L.

1994-01-01

Finding the right material for the job is an important aspect of engineering. Sometimes the choice is as fundamental as selecting between steel and aluminum. Other times, the choice may be between different compositions in an alloy. Discovering and compiling materials data is a demanding task, but it leads to accurate models for analysis and successful materials application. Mat. DB. is a database management system designed for maintaining information on the properties and processing of engineered materials, including metals, plastics, composites, and ceramics. It was developed by the Center for Materials Data of American Society for Metals (ASM) International. The ASM Center for Materials Data collects and reviews material property data for publication in books, reports, and electronic database. Mat. DB was developed to aid the data management and material applications.

Materials Frontiers to Empower Quantum Computing

DOE Office of Scientific and Technical Information (OSTI.GOV)

Taylor, Antoinette Jane; Sarrao, John Louis; Richardson, Christopher

This is an exciting time at the nexus of quantum computing and materials research. The materials frontiers described in this report represent a significant advance in electronic materials and our understanding of the interactions between the local material and a manufactured quantum state. Simultaneously, directed efforts to solve materials issues related to quantum computing provide an opportunity to control and probe the fundamental arrangement of matter that will impact all electronic materials. An opportunity exists to extend our understanding of materials functionality from electronic-grade to quantum-grade by achieving a predictive understanding of noise and decoherence in qubits and their originsmore » in materials defects and environmental coupling. Realizing this vision systematically and predictively will be transformative for quantum computing and will represent a qualitative step forward in materials prediction and control.« less

Advanced numerical models and material characterisation techniques for composite materials subject to impact and shock wave loading

NASA Astrophysics Data System (ADS)

Clegg, R. A.; White, D. M.; Hayhurst, C.; Ridel, W.; Harwick, W.; Hiermaier, S.

2003-09-01

The development and validation of an advanced material model for orthotropic materials, such as fibre reinforced composites, is described. The model is specifically designed to facilitate the numerical simulation of impact and shock wave propagation through orthotropic materials and the prediction of subsequent material damage. Initial development of the model concentrated on correctly representing shock wave propagation in composite materials under high and hypervelocity impact conditions [1]. This work has now been extended to further concentrate on the development of improved numerical models and material characterisation techniques for the prediction of damage, including residual strength, in fibre reinforced composite materials. The work is focussed on Kevlar-epoxy however materials such as CFRP are also being considered. The paper describes our most recent activities in relation to the implementation of advanced material modelling options in this area. These enable refined non-liner directional characteristics of composite materials to be modelled, in addition to the correct thermodynamic response under shock wave loading. The numerical work is backed by an extensive experimental programme covering a wide range of static and dynamic tests to facilitate derivation of model input data and to validate the predicted material response. Finally, the capability of the developing composite material model is discussed in relation to a hypervelocity impact problem.

Near single-crystalline, high-carrier-mobility silicon thin film on a polycrystalline/amorphous substrate

DOEpatents

Findikoglu, Alp T [Los Alamos, NM; Jia, Quanxi [Los Alamos, NM; Arendt, Paul N [Los Alamos, NM; Matias, Vladimir [Santa Fe, NM; Choi, Woong [Los Alamos, NM

2009-10-27

A template article including a base substrate including: (i) a base material selected from the group consisting of polycrystalline substrates and amorphous substrates, and (ii) at least one layer of a differing material upon the surface of the base material; and, a buffer material layer upon the base substrate, the buffer material layer characterized by: (a) low chemical reactivity with the base substrate, (b) stability at temperatures up to at least about 800.degree. C. under low vacuum conditions, and (c) a lattice crystal structure adapted for subsequent deposition of a semiconductor material; is provided, together with a semiconductor article including a base substrate including: (i) a base material selected from the group consisting of polycrystalline substrates and amorphous substrates, and (ii) at least one layer of a differing material upon the surface of the base material; and, a buffer material layer upon the base substrate, the buffer material layer characterized by: (a) low chemical reactivity with the base substrate, (b) stability at temperatures up to at least about 800.degree. C. under low vacuum conditions, and (c) a lattice crystal structure adapted for subsequent deposition of a semiconductor material, and, a top-layer of semiconductor material upon the buffer material layer.

3D Viscoelastic Traction Force Microscopy

PubMed Central

Toyjanova, Jennet; Hannen, Erin; Bar-Kochba, Eyal; Darling, Eric M.; Henann, David L.; Franck, Christian

2014-01-01

Native cell-material interactions occur on materials differing in their structural composition, chemistry, and physical compliance. While the last two decades have shown the importance of traction forces during cell-material interactions, they have been almost exclusively presented on purely elastic in-vitro materials. Yet, most bodily tissue materials exhibit some level of viscoelasticity, which could play an important role in how cells sense and transduce tractions. To expand the realm of cell traction measurements and to encompass all materials from elastic to viscoelastic, this paper presents a general, and comprehensive approach for quantifying 3D cell tractions in viscoelastic materials. This methodology includes the experimental characterization of the time-dependent material properties for any viscoelastic material with the subsequent mathematical implementation of the determined material model into a 3D traction force microscopy (3D TFM) framework. Utilizing this new 3D viscoelastic TFM (3D VTFM) approach, we quantify the influence of viscosity on the overall material traction calculations and quantify the error associated with omitting time-dependent material effects, as is the case for all other TFM formulations. We anticipate that the 3D VTFM technique will open up new avenues of cell-material investigations on even more physiologically relevant time-dependent materials including collagen and fibrin gels. PMID:25170569

Preparation of calibration materials for microanalysis of Ti minerals by direct fusion of synthetic and natural materials: experience with LA-ICP-MS analysis of some important minor and trace elements in ilmenite and rutile.

PubMed

Odegård, M; Mansfeld, J; Dundas, S H

2001-08-01

Calibration materials for microanalysis of Ti minerals have been prepared by direct fusion of synthetic and natural materials by resistance heating in high-purity graphite electrodes. Synthetic materials were FeTiO3 and TiO2 reagents doped with minor and trace elements; CRMs for ilmenite, rutile, and a Ti-rich magnetite were used as natural materials. Problems occurred during fusion of Fe2O3-rich materials, because at atmospheric pressure Fe2O3 decomposes into Fe3O4 and O2 at 1462 degrees C. An alternative fusion technique under pressure was tested, but the resulting materials were characterized by extensive segregation and development of separate phases. Fe2O3-rich materials were therefore fused below this temperature, resulting in a form of sintering, without conversion of the materials into amorphous glasses. The fused materials were studied by optical microscopy and EPMA, and tested as calibration materials by inductively coupled plasma mass spectrometry, equipped with laser ablation for sample introduction (LA-ICP-MS). It was demonstrated that calibration curves based on materials of rutile composition, within normal analytical uncertainty, generally coincide with calibration curves based on materials of ilmenite composition. It is, therefore, concluded that LA-ICP-MS analysis of Ti minerals can with advantage be based exclusively on calibration materials prepared for rutile, thereby avoiding the special fusion problems related to oxide mixtures of ilmenite composition. It is documented that sintered materials were in good overall agreement with homogeneous glass materials, an observation that indicates that in other situations also sintered mineral concentrates might be a useful alternative for instrument calibration, e.g. as alternative to pressed powders.

Compaction of Confining Materials in Pillar Blast Tests

NASA Astrophysics Data System (ADS)

Petropoulos, N.; Wimmer, M.; Johansson, D.; Nordlund, E.

2018-06-01

Two confined pillar tests were conducted at the Kiirunavaara mine to investigate the degree of compaction of three materials, i.e., 0-32-mm backfilled material, a blend of ore and waste material and caved material. Two blastholes were drilled parallel to each pillar wall, and several measurement holes were drilled in between the blastholes through each pillar. Both the measurement holes and backfilled materials, except the caved material, were instrumented. Two types of measurements were taken: dynamic measurements with accelerometers, and static measurements which considered the location of the instrumentation pre- and post-blast. Dynamic measurements involved the burden movement and the confining material behavior, and static measurements contained the final location of sensors inside and the angle of repose of the confining material. The results showed that the size distribution of the confining material affects its behavior under dynamic loading. The backfilled materials showed an apparent cohesion forming an agglomeration on the surface of the blasted burden. The burden moved as one slab due to simultaneous detonation. A gap was formed between the blasted burden and the new face. This gap was partially filled with burden erosion material which was finer fragmented than the blasted burden material.

Permeability analysis of Asbuton material used as core layers of water resistance in the body of dam

NASA Astrophysics Data System (ADS)

Rahim, H.; Tjaronge, M. W.; Thaha, A.; Djamaluddin, R.

2017-11-01

In order to increase consumption of the local materials and national products, large reserves of Asbuton material about 662.960 million tons in the Buton Islands became an alternative as a waterproof core layer in the body of dam. The Asbuton material was used in this research is Lawele Granular Asphalt (LGA). This study was an experimental study conducted in the laboratory by conducting density testing (content weight) and permeability on Asbuton material. Testing of the Asbuton material used Falling Head method to find out the permeability value of Asbuton material. The data of test result to be analyzed are the relation between compaction energy and density value also relation between density value and permeability value of Asbuton material. The result shows that increases the number of blow apply to the Asbuton material at each layer will increase the density of the Asbuton material. The density value of Asbuton material that satisfies the requirements for use as an impermeable core layer in the dam body is 1.53 grams/cm3. The increase the density value (the weight of the contents) of the Asbuton material will reduce its permeability value of the Asbuton material.

Apparatus and Method for Increasing the Diameter of Metal Alloy Wires Within a Molten Metal Pool

DOEpatents

Hartman, Alan D.; Argetsinger, Edward R.; Hansen, Jeffrey S.; Paige, Jack I.; King, Paul E.; Turner, Paul C.

2002-01-29

In a dip forming process the core material to be coated is introduced directly into a source block of coating material eliminating the need for a bushing entrance component. The process containment vessel or crucible is heated so that only a portion of the coating material becomes molten, leaving a solid portion of material as the entrance port of, and seal around, the core material. The crucible can contain molten and solid metals and is especially useful when coating core material with reactive metals. The source block of coating material has been machined to include a close tolerance hole of a size and shape to closely fit the core material. The core material moves first through the solid portion of the source block of coating material where the close tolerance hole has been machined, then through a solid/molten interface, and finally through the molten phase where the diameter of the core material is increased. The crucible may or may not require water-cooling depending upon the type of material used in crucible construction. The system may operate under vacuum, partial vacuum, atmospheric pressure, or positive pressure depending upon the type of source material being used.

Metal-organic frameworks and their derived materials for electrochemical energy storage and conversion: Promises and challenges.

PubMed

Wu, Hao Bin; Lou, Xiong Wen David

2017-12-01

In addition to their conventional uses, metal-organic frameworks (MOFs) have recently emerged as an interesting class of functional materials and precursors of inorganic materials for electrochemical energy storage and conversion technologies. This class of MOF-related materials can be broadly categorized into two groups: pristine MOF-based materials and MOF-derived functional materials. Although the diversity in composition and structure leads to diverse and tunable functionalities of MOF-based materials, it appears that much more effort in this emerging field is devoted to synthesizing MOF-derived materials for electrochemical applications. This is in view of two main drawbacks of MOF-based materials: the low conductivity nature and the stability issue. On the contrary, MOF-derived synthesis strategies have substantial advantages in controlling the composition and structure of MOF-derived materials. From this perspective, we review some emerging applications of both groups of MOF-related materials as electrode materials for rechargeable batteries and electrochemical capacitors, efficient electrocatalysts, and even electrolytes for electrochemical devices. By highlighting the advantages and challenges of each class of materials for different applications, we hope to shed some light on the future development of this highly exciting area.

A new classification system for all-ceramic and ceramic-like restorative materials.

PubMed

Gracis, Stefano; Thompson, Van P; Ferencz, Jonathan L; Silva, Nelson R F A; Bonfante, Estevam A

2015-01-01

Classification systems for all-ceramic materials are useful for communication and educational purposes and warrant continuous revisions and updates to incorporate new materials. This article proposes a classification system for ceramic and ceramic-like restorative materials in an attempt to systematize and include a new class of materials. This new classification system categorizes ceramic restorative materials into three families: (1) glass-matrix ceramics, (2) polycrystalline ceramics, and (3) resin-matrix ceramics. Subfamilies are described in each group along with their composition, allowing for newly developed materials to be placed into the already existing main families. The criteria used to differentiate ceramic materials are based on the phase or phases present in their chemical composition. Thus, an all-ceramic material is classified according to whether a glass-matrix phase is present (glass-matrix ceramics) or absent (polycrystalline ceramics) or whether the material contains an organic matrix highly filled with ceramic particles (resin-matrix ceramics). Also presented are the manufacturers' clinical indications for the different materials and an overview of the different fabrication methods and whether they are used as framework materials or monolithic solutions. Current developments in ceramic materials not yet available to the dental market are discussed.

Metal-organic frameworks and their derived materials for electrochemical energy storage and conversion: Promises and challenges

PubMed Central

Wu, Hao Bin; Lou, Xiong Wen (David)

2017-01-01

In addition to their conventional uses, metal-organic frameworks (MOFs) have recently emerged as an interesting class of functional materials and precursors of inorganic materials for electrochemical energy storage and conversion technologies. This class of MOF-related materials can be broadly categorized into two groups: pristine MOF-based materials and MOF-derived functional materials. Although the diversity in composition and structure leads to diverse and tunable functionalities of MOF-based materials, it appears that much more effort in this emerging field is devoted to synthesizing MOF-derived materials for electrochemical applications. This is in view of two main drawbacks of MOF-based materials: the low conductivity nature and the stability issue. On the contrary, MOF-derived synthesis strategies have substantial advantages in controlling the composition and structure of MOF-derived materials. From this perspective, we review some emerging applications of both groups of MOF-related materials as electrode materials for rechargeable batteries and electrochemical capacitors, efficient electrocatalysts, and even electrolytes for electrochemical devices. By highlighting the advantages and challenges of each class of materials for different applications, we hope to shed some light on the future development of this highly exciting area. PMID:29214220

Apparatus and method for increasing the diameter of metal alloy wires within a molten metal pool

DOEpatents

Hartman, Alan D.; Argetsinger, Edward R.; Hansen, Jeffrey S.; Paige, Jack I.; King, Paul E.; Turner, Paul C.

2002-01-29

In a dip forming process the core material to be coated is introduced directly into a source block of coating material eliminating the need for a bushing entrance component. The process containment vessel or crucible is heated so that only a portion of the coating material becomes molten, leaving a solid portion of material as the entrance port of, and seal around, the core material. The crucible can contain molten and solid metals and is especially useful when coating core material with reactive metals. The source block of coating material has been machined to include a close tolerance hole of a size and shape to closely fit the core material. The core material moves first through the solid portion of the source block of coating material where the close tolerance hole has been machined, then through a solid/molten interface, and finally through the molten phase where the diameter of the core material is increased. The crucible may or may not require water-cooling depending upon the type of material used in crucible construction. The system may operate under vacuum, partial vacuum, atmospheric pressure, or positive pressure depending upon the type of source material being used.

Behavioural response of Phytoseiulus persimilisin inert materials for technical application.

PubMed

Wendorf, Dennis; Sermann, Helga; Katz, Peter; Lerche, Sandra; Büttner, Carmen

2009-01-01

A large scale application of the predatory mite Phytoseiulus persimilis Athias-Henriot for use in the biological control of spider mites in the field requires testing the behaviour of Phytoseiulus persimilis in inert materials, like millet pelts and Vermiculite (1-3 mm). In laboratory studies, the distribution of the individuals in such materials, the time of remaining in the material were proved. To examine the abiotic influences on the time of remaining in the material, the dampness of the materials was varied (0%, 5% and 10%). Moreover, the influence of attitude of materials was tested. The time of emigration from the material was noted for each individual. Emigration from all dry materials was completed 15 minutes at the latest after set up of the mites. The increase of dampness had an obvious effect on the time of remaining in the material. In this respect the material millet pelts showed the most favourable effect with 10% dampness. Increasing attitude of material the mobility of predatory mites will be influenced negatively above 75 cm. Up to 50 cm, mites have not a problem to move in the material and the time of remaining can be prolonged considerably.

Computational prediction of new auxetic materials.

PubMed

Dagdelen, John; Montoya, Joseph; de Jong, Maarten; Persson, Kristin

2017-08-22

Auxetics comprise a rare family of materials that manifest negative Poisson's ratio, which causes an expansion instead of contraction under tension. Most known homogeneously auxetic materials are porous foams or artificial macrostructures and there are few examples of inorganic materials that exhibit this behavior as polycrystalline solids. It is now possible to accelerate the discovery of materials with target properties, such as auxetics, using high-throughput computations, open databases, and efficient search algorithms. Candidates exhibiting features correlating with auxetic behavior were chosen from the set of more than 67 000 materials in the Materials Project database. Poisson's ratios were derived from the calculated elastic tensor of each material in this reduced set of compounds. We report that this strategy results in the prediction of three previously unidentified homogeneously auxetic materials as well as a number of compounds with a near-zero homogeneous Poisson's ratio, which are here denoted "anepirretic materials".There are very few inorganic materials with auxetic homogenous Poisson's ratio in polycrystalline form. Here authors develop an approach to screening materials databases for target properties such as negative Poisson's ratio by using stability and structural motifs to predict new instances of homogenous auxetic behavior as well as a number of materials with near-zero Poisson's ratio.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Seo, Dong-Kyun; Medpelli, Dinesh; Ladd, Danielle

A product formed from a first material including a geopolymer resin material, a geopolymer resin, or a combination thereof by contacting the first material with a fluid and removing at least some of the fluid to yield a product. The first material may be formed by heating and/or aging an initial geopolymer resin material to yield the first material before contacting the first material with the fluid. In some cases, contacting the first material with the fluid breaks up or disintegrates the first material (e.g., in response to contact with the fluid and in the absence of external mechanical stress),more » thereby forming particles having an external dimension in a range between 1 nm and 2 cm.« less

Renewable smart materials

NASA Astrophysics Data System (ADS)

Kim, Hyun Chan; Mun, Seongcheol; Ko, Hyun-U.; Zhai, Lindong; Kafy, Abdullahil; Kim, Jaehwan

2016-07-01

The use of renewable materials is essential in future technologies to harmonize with our living environment. Renewable materials can maintain our resources from the environment so as to overcome degradation of natural environmental services and diminished productivity. This paper reviews recent advancement of renewable materials for smart material applications, including wood, cellulose, chitin, lignin, and their sensors, actuators and energy storage applications. To further improve functionality of renewable materials, hybrid composites of inorganic functional materials are introduced by incorporating carbon nanotubes, titanium dioxide and tin oxide conducting polymers and ionic liquids. Since renewable materials have many advantages of biocompatible, sustainable, biodegradable, high mechanical strength and versatile modification behaviors, more research efforts need to be focused on the development of renewable smart materials.

Microfabrication of hierarchical structures for engineered mechanical materials

NASA Astrophysics Data System (ADS)

Vera Canudas, Marc

Materials found in nature present, in some cases, unique properties from their constituents that are of great interest in engineered materials for applications ranging from structural materials for the construction of bridges, canals and buildings to the fabrication of new lightweight composites for airplane and automotive bodies, to protective thin film coatings, amongst other fields. Research in the growing field of biomimetic materials indicates that the micro-architectures present in natural materials are critical to their macroscopic mechanical properties. A better understanding of the effect that structure and hierarchy across scales have on the material properties will enable engineered materials with enhanced properties. At the moment, very few theoretical models predict mechanical properties of simple materials based on their microstructures. Moreover these models are based on observations from complex biological systems. One way to overcome this challenge is through the use of microfabrication techniques to design and fabricate simple materials, more appropriate for the study of hierarchical organizations and microstructured materials. Arrays of structures with controlled geometry and dimension can be designed and fabricated at different length scales, ranging from a few hundred nanometers to centimeters, in order to mimic similar systems found in nature. In this thesis, materials have been fabricated in order to gain fundamental insight into the complex hierarchical materials found in nature and to engineer novel materials with enhanced mechanical properties. The materials fabricated here were mechanically characterized and compared to simple mechanics models to describe their behavior with the goal of applying the knowledge acquired to the design and synthesis of future engineered materials with novel properties.

Comparison of wear between occlusal splint materials and resin composite materials.

PubMed

Reyes-Sevilla, M; Kuijs, R H; Werner, A; Kleverlaan, C J; Lobbezoo, F

2018-07-01

Tooth wear in bruxing patients often results in a need for treatment with composite restorations. In some cases, bruxing patients receive an occlusal splint as a protective means as well. However, the wear between these opposing materials has not been investigated yet. The aim of this in vitro study was to assess the wear of different splint materials against resin composite materials. A two-body wear test was conducted using the ACTA wear machine. The materials selected for this study were three composites used for direct restorations (Filtek Z250, CLEARFIL AP-X, and Filtek Supreme XT) and four occlusal splints materials, viz. a polyamide resin (ThermoSens) an conventional (hand-processed), milled and printed polymethylmethacrylate (PMMA). As antagonistic materials, stainless steel, Filtek Supreme XT and CLEARFIL AP-X were used. The wear rate of the seven materials was determined after 200 000 cycles, using a profilometry. The rates were analysed using two-way ANOVA and post hoc Tukey's tests. The wear rates were significantly higher for the conventional and milled PMMA materials than for all other materials (P < .001). The wear rates of printed PMMA and the polyamide resin were comparable to composite wear rates. The antagonist materials have minor or no influence on the amount of wear of the various splint materials (P < .001). In conclusion, different splint materials yielded different wear rates for all antagonist materials tested. Keeping in mind that this study is an experimental in vitro study, this finding enables practitioners to choose the splint material necessary according to their patients' needs. © 2018 John Wiley & Sons Ltd.

Materials in the economy; material flows, scarcity, and the environment

USGS Publications Warehouse

Wagner, Lorie A.

2002-01-01

The importance of materials to the economy of the United States is described, including the levels of consumption and uses of materials. The paths (or flows) that materials take from extraction, through processing, to consumer products, and then final disposition are illustrated. Scarcity and environmental issues as they relate to the flow of materials are discussed. Examples for the three main themes of the report (material flows, scarcity, and the environment) are presented.

Low transient thermal stress turbine engine components

DOEpatents

Shi, Jun [Glastonbury, CT; Schmidt, Wayde R [Pomfret Center, CT

2011-06-28

A turbine vane includes a platform; and at least one airfoil mounted to the platform and having a trailing edge and a leading edge, wherein the vane is composed of a functionally graded material having a first material and a second material, wherein the trailing edge includes a greater amount of the first material than the second material, and the leading edge includes a greater amount of the second material than the first material.

Coaxial test fixture

DOEpatents

Praeg, W.F.

1984-03-30

This invention pertains to arrangements for performing electrical tests on contact material samples, and in particular for testing contact material test samples in an evacuated environment under high current loads. Frequently, it is desirable in developing high-current separable contact material, to have at least a preliminary analysis of selected candidate conductor materials. Testing of material samples will hopefully identify materials unsuitable for high current electrical contact without requiring incorporation of the materials into a completed and oftentimes complex structure.

Thermoelectric materials and methods for synthesis thereof

DOEpatents

Ren, Zhifeng; Zhang, Qinyong; Zhang, Qian; Chen, Gang

2015-08-04

Materials having improved thermoelectric properties are disclosed. In some embodiments, lead telluride/selenide based materials with improved figure of merit and mechanical properties are disclosed. In some embodiments, the lead telluride/selenide based materials of the present disclosure are p-type thermoelectric materials formed by adding sodium (Na), silicon (Si) or both to thallium doped lead telluride materials. In some embodiments, the lead telluride/selenide based materials are formed by doping lead telluride/selenides with potassium.

Nanocrystalline ceramic materials

DOEpatents

Siegel, Richard W.; Nieman, G. William; Weertman, Julia R.

1994-01-01

A method for preparing a treated nanocrystalline metallic material. The method of preparation includes providing a starting nanocrystalline metallic material with a grain size less than about 35 nm, compacting the starting nanocrystalline metallic material in an inert atmosphere and annealing the compacted metallic material at a temperature less than about one-half the melting point of the metallic material.

46 CFR 151.58-1 - Required materials.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 46 Shipping 5 2010-10-01 2010-10-01 false Required materials. 151.58-1 Section 151.58-1 Shipping... BULK LIQUID HAZARDOUS MATERIAL CARGOES Required Materials of Construction § 151.58-1 Required materials... materials listed in that paragraph may be used in components that contact the cargo or its vapor: (a...

46 CFR 151.58-1 - Required materials.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 46 Shipping 5 2013-10-01 2013-10-01 false Required materials. 151.58-1 Section 151.58-1 Shipping... BULK LIQUID HAZARDOUS MATERIAL CARGOES Required Materials of Construction § 151.58-1 Required materials... materials listed in that paragraph may be used in components that contact the cargo or its vapor: (a...

46 CFR 151.58-1 - Required materials.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 46 Shipping 5 2012-10-01 2012-10-01 false Required materials. 151.58-1 Section 151.58-1 Shipping... BULK LIQUID HAZARDOUS MATERIAL CARGOES Required Materials of Construction § 151.58-1 Required materials... materials listed in that paragraph may be used in components that contact the cargo or its vapor: (a...

Obtaining NASA Approval for use of Non-Metallic Materials in Manned Space Flight

NASA Technical Reports Server (NTRS)

Davis, Samuel E.; Wise, Harry L.

2003-01-01

Material manufacturers and suppliers are often surprised when a material commonly provided to industry is not approved for use on manned spacecraft. Often the reason is a lack of test data in environments that simulate those encountered in space applications, especially oxygen-enriched conditions, which significantly increase both the likelihood of material combustion and the propagation of a fire. This paper introduces the requirements for flight approval of non-metallic materials, focusing on material testing for human-rated space flight programs; it reviews the history of flight materials requirements and provides the rationale for such and introduces specific requirements related to testing and to good material engineering and design practices. After describing the procedure for submitting materials to be tested, the paper outlines options available if a material fails testing. In addition, this treatise introduces the National Aeronautics and Space Administration's (NASA's) Materials and Processes Technical Information System (MAPTIS), a database housing all test data produced in accordance with NASA-STD-6001, Flammability, Odor, Offgassing, and Compatibility Requirements and Test Procedures for Materials in Environments that Support Combustion.

Energy Conversion Alternatives Study (ECAS), Westinghouse phase 1. Volume 2: Materials considerations. [materials used in boilers and heat exchangers of energy conversion systems for electric power plants using coal

NASA Technical Reports Server (NTRS)

Thomas, D. E.

1976-01-01

Extensive studies are presented which were carried out on materials behavior in nine advanced energy conversion systems employing coal and coal-derived fuels. The areas of materials behavior receiving particular attention in this regard are: (1) fireside corrosion and erosion in boiler and heat exchanger materials, (2) oxidation and hot corrosion of gas turbine materials, (3) liquid metal corrosion and mass transport, (4) high temperature steam corrosion, (5) compatability of materials with coal slag and MHD seed, (6) reaction of materials with impure helium, (7) allowable stresses for boiler and heat exchanger materials, (8) environmental effects on mechanical properties, and (9) liquid metal purity control and instrumentation. Such information was then utilized in recommending materials for use in the critical components of the power systems, and at the same time to identify materials problem areas and to evaluate qualitatively the difficulty of solving those problems. Specific materials recommendations for critical components of the nine advanced systems under study are contained in summary tables.

Method of Fabricating Protective Coating for a Crucible with the Coating Having Channels Formed Therein

NASA Technical Reports Server (NTRS)

Grugel, Richard N. (Inventor)

2004-01-01

A method is provided for the fabrication of a protective coating for a crucible with channels being formed in the coating. A material is adhered to the outer wall of the crucible to form a pattern thereon. The outer wall of the crucible along with the pattern of material adhered thereto is next coated with another material. The material used to form the pattern should extend through the outer material coating to define at least one port therein. Next, the crucible with its pattern of material and outer coating material is heated to a temperature of transformation at which the pattern of material is transformed to a fluidic state while the crucible and outer coating material maintain their solid integrity. Such transformation could also be accomplished by using a solvent that causes the pattern of material to dissolve. Finally, the material in its fluidic state is removed via the at least one port formed in the outer material coating thereby leaving channels defined in the coating adjacent the outer wall of the crucible.

The Next Generation Thermoelectric Materials

NASA Astrophysics Data System (ADS)

Tritt, Terry M.

1999-11-01

Recently there been renewed interest in materials for thermoelectric refrigeration and power generation applications.^1, 2 Many new materials and new classes of materials are being investigated for potential thermoelectric applications. An introduction to thermoelectric refrigeration and power generation, the advantages and disadvantages and potential applications will be discussed. An overview of some of the current thermoelectric materials under investigation and the criteria for selection of new materials will be given. To be promising as a thermoelectric material, a material must have a high Seebeck coefficient, α, high electrical conductivity, σ, and a low thermal conductivity, λ. These parameters go into the material's dimensionless figure of merit ZT = α ^2σT/λ. Our research at Clemson is focused on a number of new materials, quasicrystals and pentatelluride materials, which show promise for thermoelectrics and these systems will be briefly discussed. Demonstrations of thermoelectric devices will be shown and discussed. 1.) Thermoelectric Materials: New Directions and Approaches, MRS Volumes 478 and 545, edited by Terry M. Tritt et. al. 2.) G. Mahan, B. Sales and J. Sharp, Physics Today, March 50, 42, 1997

Thermal effects on transducer material for heat assisted magnetic recording application

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ji, Rong, E-mail: Ji-Rong@dsi.a-star.edu.sg; Xu, Baoxi; Cen, Zhanhong

2015-05-07

Heat Assisted Magnetic Recording (HAMR) is a promising technology for next generation hard disk drives with significantly increased data recording capacities. In HAMR, an optical near-field transducer (NFT) is used to concentrate laser energy on a magnetic recording medium to fulfill the heat assist function. The key components of a NFT are transducer material, cladding material, and adhesion material between the cladding and the transducer materials. Since transducer materials and cladding materials have been widely reported, this paper focuses on the adhesion materials between the Au transducer and the Al{sub 2}O{sub 3} cladding material. A comparative study for two kindsmore » of adhesion material, Ta and Cr, has been conducted. We found that Ta provides better thermal stability to the whole transducer than Cr. This is because after thermal annealing, chromium forms oxide material at interfaces and chromium atoms diffuse remarkably into the Au layer and react with Au to form Au alloy. This study also provides insights on the selection of adhesion material for HAMR transducer.« less

A multifluid model extended for strong temperature nonequilibrium

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chang, Chong

2016-08-08

We present a multifluid model in which the material temperature is strongly affected by the degree of segregation of each material. In order to track temperatures of segregated form and mixed form of the same material, they are defined as different materials with their own energy. This extension makes it necessary to extend multifluid models to the case in which each form is defined as a separate material. Statistical variations associated with the morphology of the mixture have to be simplified. Simplifications introduced include combining all molecularly mixed species into a single composite material, which is treated as another segregatedmore » material. Relative motion within the composite material, diffusion, is represented by material velocity of each component in the composite material. Compression work, momentum and energy exchange, virtual mass forces, and dissipation of the unresolved kinetic energy have been generalized to the heterogeneous mixture in temperature nonequilibrium. The present model can be further simplified by combining all mixed forms of materials into a composite material. Molecular diffusion in this case is modeled by the Stefan-Maxwell equations.« less

Joining of dissimilar materials

DOEpatents

Tucker, Michael C; Lau, Grace Y; Jacobson, Craig P

2012-10-16

A method of joining dissimilar materials having different ductility, involves two principal steps: Decoration of the more ductile material's surface with particles of a less ductile material to produce a composite; and, sinter-bonding the composite produced to a joining member of a less ductile material. The joining method is suitable for joining dissimilar materials that are chemically inert towards each other (e.g., metal and ceramic), while resulting in a strong bond with a sharp interface between the two materials. The joining materials may differ greatly in form or particle size. The method is applicable to various types of materials including ceramic, metal, glass, glass-ceramic, polymer, cermet, semiconductor, etc., and the materials can be in various geometrical forms, such as powders, fibers, or bulk bodies (foil, wire, plate, etc.). Composites and devices with a decorated/sintered interface are also provided.

Insulation Materials Comprising Fibers Having a Partially Cured Polymer Coating Thereon, Articles Including Such Insulation Materials, and Methods of Forming Such Materials and Articles

NASA Technical Reports Server (NTRS)

Morgan, Richard E. (Inventor); Meeks, Craig L. (Inventor)

2017-01-01

Insulation materials have a coating of a partially cured polymer on a plurality of fibers, and the plurality of coated fibers in a cross-linked polymeric matrix. Insulation may be formed by applying a preceramic polymer to a plurality of fibers, heating the preceramic polymer to form a partially cured polymer over at least portions of the plurality of fibers, disposing the plurality of fibers in a polymeric material, and curing the polymeric material. A rocket motor may be formed by disposing a plurality of coated fibers in an insulation precursor, curing the insulation precursor to form an insulation material without sintering the partially cured polymer, and providing an energetic material over the polymeric material. An article includes an insulation material over at least one surface.

Superconducting thermoelectric generator

DOEpatents

Metzger, J.D.; El-Genk, M.S.

1998-05-05

An apparatus and method for producing electricity from heat is disclosed. The present invention is a thermoelectric generator that uses materials with substantially no electrical resistance, often called superconductors, to efficiently convert heat into electrical energy without resistive losses. Preferably, an array of superconducting elements is encased within a second material with a high thermal conductivity. The second material is preferably a semiconductor. Alternatively, the superconducting material can be doped on a base semiconducting material, or the superconducting material and the semiconducting material can exist as alternating, interleaved layers of waferlike materials. A temperature gradient imposed across the boundary of the two materials establishes an electrical potential related to the magnitude of the temperature gradient. The superconducting material carries the resulting electrical current at zero resistivity, thereby eliminating resistive losses. The elimination of resistive losses significantly increases the conversion efficiency of the thermoelectric device. 4 figs.

Superconducting thermoelectric generator

DOEpatents

Metzger, J.D.; El-Genk, M.S.

1996-01-01

An apparatus and method for producing electricity from heat. The present invention is a thermoelectric generator that uses materials with substantially no electrical resistance, often called superconductors, to efficiently convert heat into electrical energy without resistive losses. Preferably, an array of superconducting elements is encased within a second material with a high thermal conductivity. The second material is preferably a semiconductor. Alternatively, the superconducting material can be doped on a base semiconducting material, or the superconducting material and the semiconducting material can exist as alternating, interleaved layers of waferlike materials. A temperature gradient imposed across the boundary of the two materials establishes an electrical potential related to the magnitude of the temperature gradient. The superconducting material carries the resulting electrical current at zero resistivity, thereby eliminating resistive losses. The elimination of resistive losses significantly increases the conversion efficiency of the thermoelectric device.

Superconducting thermoelectric generator

DOEpatents

Metzger, John D.; El-Genk, Mohamed S.

1998-01-01

An apparatus and method for producing electricity from heat. The present invention is a thermoelectric generator that uses materials with substantially no electrical resistance, often called superconductors, to efficiently convert heat into electrical energy without resistive losses. Preferably, an array of superconducting elements is encased within a second material with a high thermal conductivity. The second material is preferably a semiconductor. Alternatively, the superconducting material can be doped on a base semiconducting material, or the superconducting material and the semiconducting material can exist as alternating, interleaved layers of waferlike materials. A temperature gradient imposed across the boundary of the two materials establishes an electrical potential related to the magnitude of the temperature gradient. The superconducting material carries the resulting electrical current at zero resistivity, thereby eliminating resistive losses. The elimination of resistive losses significantly increases the conversion efficiency of the thermoelectric device.

Multi-component assembly casting

DOEpatents

James, Allister W.

2015-10-13

Multi-component vane segment and method for forming the same. Assembly includes: positioning a pre-formed airfoil component (12) and a preformed shroud heat resistant material (18) in a mold, wherein the airfoil component (12) and the shroud heat resistant material (18) each comprises an interlocking feature (24); preheating the mold; introducing molten structural material (46) into the mold; and solidifying the molten structural material such that it interlocks the pre-formed airfoil component (12) with respect to the preformed shroud heat resistant material (18) and is effective to provide structural support for the shroud heat resistant material (18). Surfaces between the airfoil component (12) and the structural material (46), between the airfoil component (12) and the shroud heat resistant material (18), and between the shroud heat resistant material (18) and the structural material (46) are free of metallurgical bonds.

Termination of Safeguards for Accountable Nuclear Materials at the Idaho National Laboratory

DOE Office of Scientific and Technical Information (OSTI.GOV)

Michael Holzemer; Alan Carvo

2012-04-01

Termination of safeguards ends requirements of Nuclear Material Control and Accountability (MC&A) and thereby removes the safeguards basis for applying physical protection requirements for theft and diversion of nuclear material, providing termination requirements are met as described. Department of Energy (DOE) M 470.4 6 (Nuclear Material Control and Accountability [8/26/05]) stipulates: 1. Section A, Chapter I (1)( q) (1): Safeguards can be terminated on nuclear materials provided the following conditions are met: (a) 'If the material is special nuclear material (SNM) or protected as SNM, it must be attractiveness level E and have a measured value.' (b) 'The material hasmore » been determined by DOE line management to be of no programmatic value to DOE.' (c) 'The material is transferred to the control of a waste management organization where the material is accounted for and protected in accordance with waste management regulations. The material must not be collocated with other accountable nuclear materials.' Requirements for safeguards termination depend on the safeguards attractiveness levels of the material. For attractiveness level E, approval has been granted from the DOE Idaho Operations Office (DOE ID) to Battelle Energy Alliance, LLC (BEA) Safeguards and Security (S&S). In some cases, it may be necessary to dispose of nuclear materials of attractiveness level D or higher. Termination of safeguards for such materials must be approved by the Departmental Element (this is the DOE Headquarters Office of Nuclear Energy) after consultation with the Office of Security.« less

High Throughput Assay for Bacterial Adhesion on Acellular Dermal Matrices and Synthetic Surgical Materials

PubMed Central

Nyame, Theodore T.; Lemon, Katherine P.; Kolter, Roberto; Liao, Eric C.

2013-01-01

Background There has been increasing use of various synthetic and biologically derived materials in surgery. Biologic surgical materials are used in many plastic surgery procedures, ranging from breast reconstruction to hernia repairs. In particular, acellular dermal matrix (ADM) material has gained popularity in these applications. There is a paucity of data on how ADM compares to other surgical materials as a substrate for bacterial adhesion, the first step in formation biofilm, which occurs in prosthetic wound infections. We have designed a high throughput assay to evaluate Staphylococcus aureus adherence on various synthetic and biologically derived materials. Methods Clinical isolates of Staphylococcus aureus (strains SC-1 and UAMS-1) were cultured with different materials and bacterial adherence was measured using a resazurin cell vitality reporter microtiter assay. Four materials that are commonly utilized in reconstructive procedures were evaluated: prolene mesh, vicryl mesh, and two different ADM preparations (AlloDerm®, FlexHD®). We were able to develop a high throughput and reliable assay for quantifying bacterial adhesion on synthetic and biologically derived materials. Results The resazurin vitality assay can be reliably used to quantify bacterial adherence to acellular dermal matrix material, as well as synthetic material. S. aureus strains SC-1 and UAMS-1 both adhered better to ADM materials (AlloDerm® vs. FlexHD®) than to the synthetic material prolene. S. aureus also adhered better to vicryl than to prolene. Strain UAMS-1 adhered better to vicryl and ADM materials than did strain SC-1. Conclusion Our results suggest that S. aureus adheres more readily to ADM material than to synthetic material. We have developed an assay to rapidly test bacterial formation on surgical materials, using two S. aureus bacterial strains. This provides a standard method to evaluate existing and new materials with regard to bacterial adherence and potential propensity for infection. This assay is particularly important in the clinical context of the severe sequelae of post-operative infection. PMID:22030489

What LDEF means for development and testing of materials

NASA Technical Reports Server (NTRS)

Whitaker, Ann F.; Stuckey, Wayne K.; Stein, Bland A.

1993-01-01

The Long Duration Exposure Facility (LDEF) served as the ultimate laboratory to provide combined space environmental effects on materials. The LDEF structure and its 57 experiments contained an estimated 12,000 to 14,000 specimens of materials and materials processes. It not only provided information about the resistance of these materials to the space environment but gives us direction into future needs for spacecraft materials development and testing. This paper provides an overview of the materials effects observed on the satellite and suggests recommendations for the future work in space-qualified materials development and space environmental simulation.

Improved method and composition for immobilization of waste in cement-based material

DOEpatents

Tallent, O.K.; Dodson, K.E.; McDaniel, E.W.

1987-10-01

A composition and method for fixation or immobilization of aqueous hazardous waste material in cement-based materials (grout) is disclosed. The amount of drainable water in the cured grout is reduced by the addition of an ionic aluminum compound to either the waste material or the mixture of waste material and dry-solid cement- based material. This reduction in drainable water in the cured grout obviates the need for large, expensive amounts of gelling clays in grout materials and also results in improved consistency and properties of these cement-based waste disposal materials.

Electrochromic device

DOEpatents

Schwendemanm, Irina G [Wexford, PA; Polcyn, Adam D [Pittsburgh, PA; Finley, James J [Pittsburgh, PA; Boykin, Cheri M [Kingsport, TN; Knowles, Julianna M [Apollo, PA

2011-03-15

An electrochromic device includes a first substrate spaced from a second substrate. A first conductive member is formed over at least a portion of the first substrate. A first electrochromic material is formed over at least a portion of the first conductive member. The first electrochromic material includes an organic material. A second conductive member is formed over at least a portion of the second substrate. A second electrochromic material is formed over at least a portion of the second conductive member. The second electrochromic material includes an inorganic material. An ionic liquid is positioned between the first electrochromic material and the second electrochromic material.

Half-heusler alloys with enhanced figure of merit and methods of making

DOEpatents

Ren, Zhifeng; Yan, Xiao; Joshi, Giri; Chen, Shuo; Chen, Gang; Poudel, Bed; Caylor, James Christopher

2015-06-02

Thermoelectric materials and methods of making thermoelectric materials having a nanometer mean grain size less than 1 micron. The method includes combining and arc melting constituent elements of the thermoelectric material to form a liquid alloy of the thermoelectric material and casting the liquid alloy of the thermoelectric material to form a solid casting of the thermoelectric material. The method also includes ball milling the solid casting of the thermoelectric material into nanometer mean size particles and sintering the nanometer size particles to form the thermoelectric material having nanometer scale mean grain size.

Total materials consumption; an estimation methodology and example using lead; a materials flow analysis

USGS Publications Warehouse

Biviano, Marilyn B.; Wagner, Lorie A.; Sullivan, Daniel E.

1999-01-01

Materials consumption estimates, such as apparent consumption of raw materials, can be important indicators of sustainability. Apparent consumption of raw materials does not account for material contained in manufactured products that are imported or exported and may thus under- or over-estimate total consumption of materials in the domestic economy. This report demonstrates a methodology to measure the amount of materials contained in net imports (imports minus exports), using lead as an example. The analysis presents illustrations of differences between apparent and total consumption of lead and distributes these differences into individual lead-consuming sectors.

Nonterrestrial material processing and manufacturing of large space systems

NASA Technical Reports Server (NTRS)

Von Tiesenhausen, G.

1979-01-01

Nonterrestrial processing of materials and manufacturing of large space system components from preprocessed lunar materials at a manufacturing site in space is described. Lunar materials mined and preprocessed at the lunar resource complex will be flown to the space manufacturing facility (SMF), where together with supplementary terrestrial materials, they will be final processed and fabricated into space communication systems, solar cell blankets, radio frequency generators, and electrical equipment. Satellite Power System (SPS) material requirements and lunar material availability and utilization are detailed, and the SMF processing, refining, fabricating facilities, material flow and manpower requirements are described.