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Sample records for medium frequency repeats

  1. (Efficient identification and analysis of low and medium frequency repeats)

    SciTech Connect

    Jurka, J.

    1991-08-28

    The effective starting date of this grant was May 15. In the first three months of this project we focused primarily on organizational and technical aspects of our research which included: organization of the database of repeats in primates; preparation of software for rapid and sensitive search of novel repetitive elements in GenBank; purchase and installation of the Sun workstation; and research on the mammal-specific MAR1 family of repetitive elements (to be communicated in October).

  2. [Efficient identification and analysis of low and medium frequency repeats]. Progress report

    SciTech Connect

    Jurka, J.

    1991-08-28

    The effective starting date of this grant was May 15. In the first three months of this project we focused primarily on organizational and technical aspects of our research which included: organization of the database of repeats in primates; preparation of software for rapid and sensitive search of novel repetitive elements in GenBank; purchase and installation of the Sun workstation; and research on the mammal-specific MAR1 family of repetitive elements (to be communicated in October).

  3. Medium-Frequency Pseudonoise Georadar

    NASA Technical Reports Server (NTRS)

    Arendt, G. Dickey; Carl, J. R.; Byerly, Kent A.; Amini, B. Jon

    2005-01-01

    Ground-probing radar systems featuring medium-frequency carrier signals phase-modulated by binary pseudonoise codes have been proposed. These systems would be used to locate and detect movements of subterranean surfaces; the primary intended application is in warning of the movement of underground water toward oil-well intake ports in time to shut down those ports to avoid pumping of water. Other potential applications include oil-well logging and monitoring of underground reservoirs. A typical prior georadar system operates at a carrier frequency of at least 50 MHz in order to provide useable range resolution. This frequency is too high for adequate penetration of many underground layers of interest. On the other hand, if the carrier frequency were to be reduced greatly to increase penetration, then bandwidth and thus range resolution would also have to be reduced, thereby rendering the system less useful. The proposed medium-frequency pseudonoise georadar systems would offer the advantage of greater penetration at lower carrier frequencies, but without the loss of resolution that would be incurred by operating typical prior georadar systems at lower frequencies.

  4. Modal sensitivity for structural systems with repeated frequencies

    NASA Technical Reports Server (NTRS)

    Ojalvo, I. U.

    1987-01-01

    Repeated or closely packed modal frequencies are common physical occurrences for vibrating structures which are complex or possess multi-planes of symmetry. The computation of the sensitivity to structural modifications for these frequencies and mode shapes is made difficult by the fact that the mode shapes are not unique, since any linear combination of eigenvectors corresponding to a repeated eigenvalue is also an eigenvector. The work of Chen and Pan is extended, who used modal expansion techniques for accommodating the sensitivity analysis of structures with repeated eigenvalues. Starting with a discussion of the physical significance of sensitivity analysis for repeated frequency modes, a derivation is presented of the governing equations for the derivatives of a repeated eigenvalue. This is followed with a small example to illustrate the results. An efficient computation procedure, based upon an expansion of Nelson's ideas for large banded systems, is then proposed for systems with repeated or closely spaced eigenvalues.

  5. Adaptive Same Frequency Repeater (SFR) Study

    DTIC Science & Technology

    1976-03-01

    network is unique. This general structure has been used for wireline echo cancellers C2,3»^»5] where the frequency shaping networks were ones whose...differential area ÄA« SO ufla-L’ X’ 31 ■+ ( LOG SCALE) FIGURE 9 TRANSMIT-TO-RECEIVE ISOLATION WITH A SINGLE DOMINANT SPECULAR REFLECTOR VS ROUND-TRIP...Two different methods were used to isolate the third-order intermodulation product generated in the circuit to permit measurement of its level

  6. Using repeated sources to quantitatively determine temporal change of medium properties: Theory and an example

    NASA Astrophysics Data System (ADS)

    Long, Hui; Wen, Lianxing

    2012-09-01

    We develop a theory of using difference wavefields of repeated sources to locate and quantify temporal medium change and apply the theory to locate temporal change of seismic properties beneath the Japan subduction zone using repeated earthquakes. Our theory states the difference wavefields of two repeated sources in a temporally changed medium can be equivalently treated as wavefields propagating from conceptual sources, with their location at the place of temporal change and their strengths equal to the product of magnitude of medium property change and magnitude of the initial wavefields from the repeated sources. When the medium change extends to a finite region, the conceptual sources become volumetric sources distributed over the region of the medium change and propagating in the direction of the initial wave. The conceptualization establishes a theoretical framework for possible applications of using difference wavefields to locate and quantify temporal medium changes in geological sciences, ultrasonic experiments, civil engineering and medical imaging. We search repeating earthquakes occurring in the Japan subduction zone, formulate an empirical procedure to extract the difference wavefields between repeating earthquakes and determine temporal change of seismic properties using a back-projection method. We locate the temporal change of seismic properties beneath the Japan subduction zone to be at (37.2°N, 142°E), and estimate the magnitude of the conceptual body force associated with the temporal change to be 1.15 × 1010N, or as a reference, a 0.87% density change for an assumed volume of temporal change of 103 km3.

  7. Inverse medium scattering for the Helmholtz equation at fixed frequency

    NASA Astrophysics Data System (ADS)

    Bao, Gang; Li, Peijun

    2005-10-01

    Consider a time-harmonic electromagnetic plane wave incident on a medium enclosed by a bounded domain in \\bb{R}^2 . In this paper, existence and uniqueness of the variational problem for the direct scattering are established. An energy estimate for the scattered field is obtained on which the Born approximation is based. The Fréchet differentiability of the scattering map is examined. A new continuation method for the inverse medium scattering, which reconstructs the scatterer of an inhomogeneous medium from the boundary measurements of the scattered waves, is developed. The algorithm requires only single-frequency scattering data. Using an initial guess from the Born approximation, each update is obtained via recursive linearization on the spatial frequency of a one-parameter family of plane waves by solving one forward and one adjoint problem of the Helmholtz equation.

  8. In situ observations of medium frequency auroral radio emissions

    NASA Astrophysics Data System (ADS)

    Broughton, M.; Labelle, J. W.; Pfaff, R. F.; Parrot, M.; Yan, X.; Burchill, J. K.

    2013-12-01

    The auroral ionosphere is a region rich with plasma waves that can be studied both in space and on the ground. These waves may mediate energy exchange between particle populations and provide information about the local plasma properties and boundaries. Auroral medium frequency (MF) burst is an impulsive radio emission observed at ground-level from 1.3-4.5 MHz that is associated with local substorm onset. There have been two recent reports of impulsive, broadband, MF waves at high latitudes. Burchill and Pfaff [2005] reported observations from the FAST satellite of impulsive, broadband, MF and low frequency (LF) radio waves. Using data from the DEMETER satellite, Parrot et al. [2009] surveyed MF waves caused by lightning. This study did show a high-latitude population of MF waves. We investigate whether the waves observed by these two satellites are related to auroral MF burst. Using FAST satellite burst mode electric field data from high-latitude (> 60 degrees magnetic), low-altitude (< 1000 km) intervals of moderate to large geomagnetic activity (Kp > 3) from 1996-2002, we have found forty-four examples of impulsive MF waves, all of which are associated with impulsive LF waves. Although MF burst and the waves observed by FAST have similar spectral signatures, they have different magnetic local time dependencies, which suggests that they may be unrelated. A study of MF waves observed at high latitude by DEMETER is ongoing. In situ observations of MF burst could provide crucial information about this heretofore unexplained natural radio emission.

  9. Ground and space observations of medium frequency auroral radio emissions

    NASA Astrophysics Data System (ADS)

    Broughton, Matthew C.

    The auroral zone is a rich source of natural radio emissions that can be observed in space and at ground-level. By studying these waves, scientists can gain insight into the plasma processes that generate them and use the near-Earth space environment as a large-scale plasma physics laboratory. This thesis uses both ground-level and in situ observations to study two kinds of natural radio emissions. First, we report observations of a new kind of auroral radio emission. The waves have frequencies ranging from 1.3-2.2 MHz, bandwidths ranging from 90-272 kHz, and durations ranging from 16-355 s. Spectral analysis of the waveform data has revealed that the emission has a complex combination of at least three kinds of fine structures. For model auroral electron distributions, calculations indicate that Langmuir waves could be excited at frequencies consistent with observations. The remainder of the thesis discusses auroral medium frequency (MF) burst, an impulsive, broadband natural radio emission observed at ground-level within a few minutes of local substorm onset. LaBelle [2011] proposed that MF burst originates as Langmuir/Z-mode waves on the topside of the ionosphere that subsequently mode convert to L-mode waves and propagate to ground-level. Using continuous waveform measurements and combined observations with the Sondrestrom Incoherent Scatter Radar, we have performed two tests of this mechanism. The results of these tests are consistent with the mechanism described in LaBelle [2011]. A survey of 8,624 half-orbits of the DEMETER spacecraft has revealed 68 observations of bursty MF waves. We have compared the wave properties of these waves to those of MF burst and have found that although it is uncertain, the balance of the evidence suggests that the bursty MF waves observed with DEMETER are the same phenomenon as the ground-level MF burst. Finally, we have used numerical simulations to model both the fine structure of MF burst and to estimate the attenuation the

  10. Extended gene expression by medium exchange and repeated transient transfection for recombinant protein production enhancement.

    PubMed

    Cervera, Laura; Gutiérrez-Granados, Sonia; Berrow, Nicholas Simon; Segura, Maria Mercedes; Gòdia, Francesc

    2015-05-01

    Production of recombinant products in mammalian cell cultures can be achieved by stable gene expression (SGE) or transient gene expression (TGE). The former is based on the integration of a plasmid DNA into the host cell genome allowing continuous gene expression. The latter is based on episomal plasmid DNA expression. Conventional TGE is limited to a short production period of usually about 96 h, therefore limiting productivity. A novel gene expression approach termed extended gene expression (EGE) is explored in this study. The aim of EGE is to prolong the production period by the combination of medium exchange and repeated transfection of cell cultures with plasmid DNA to improve overall protein production. The benefit of this methodology was evaluated for the production of three model recombinant products: intracellular GFP, secreted GFP, and a Gag-GFP virus-like particles (VLPs). Productions were carried out in HEK 293 cell suspension cultures grown in animal-derived component free media using polyethylenimine (PEI) as transfection reagent. Transfections were repeated throughout the production process using different plasmid DNA concentrations, intervals of time, and culture feeding conditions in order to identify the best approach to achieve sustained high-level gene expression. Using this novel EGE strategy, the production period was prolonged between 192 and 240 h with a 4-12-fold increase in production levels, depending on the product type considered. © 2014 Wiley Periodicals, Inc.

  11. Physiological responses and bowling performance during repeated spells of medium-fast bowling.

    PubMed

    Duffield, Rob; Carney, Mitchell; Karppinen, Stuart

    2009-01-01

    The aim of the present study was to investigate the relationship between physiological and performance responses during repeated 6-over fast-bowling spells. Six, first-class, medium-fast bowlers performed 2x6-over spells separated by 45 min of light activity. The 6-over spells were based on the Cricket Australia fast bowling skills test that is a set order of deliveries at a grid-based target. Ball speed, accuracy and full and final 5-m run-up speed were measured on each ball. Nude mass, heart rate, core temperature, capillary blood lactate, pH and glucose, perceptual measures of RPE and muscle soreness (MS) and repeated vertical jump efforts were measured prior to, during and following each spell. Results indicated no decrement (P=0.41) and small effect sizes (d<0.2) in bowling speed (125.7+/-5.1 and 125.4+/-4.5 km.h(-1)) or accuracy (40.4+/-16.1 and 41.6+/-18.0 AU) between spells 1 and 2. No differences (P=0.6-0.8) were present between spells for heart rate, core temperature, lactate, pH, glucose, RPE, MS or vertical jump. Only final 5-m run-up speed showed a large correlation with ball speed (r=0.70), while accuracy and speed were not correlated (r=0.05). In conclusion, repeated 6-over spells in well-trained bowlers results in minimal performance decrement in mild conditions (22 degrees C). As faster bowlers had faster final 5-m run-up speeds, the maintenance of high final 5-m run-up speeds might be important to maintaining bowling speed. Future research should also include a third bowling spell and warmer environmental conditions.

  12. Recombination frequency in plasmid DNA containing direct repeats--predictive correlation with repeat and intervening sequence length.

    PubMed

    Oliveira, Pedro H; Lemos, Francisco; Monteiro, Gabriel A; Prazeres, Duarte M F

    2008-09-01

    In this study, a simple non-linear mathematical function is proposed to accurately predict recombination frequencies in bacterial plasmid DNA harbouring directly repeated sequences. The mathematical function, which was developed on the basis of published data on deletion-formation in multicopy plasmids containing direct-repeats (14-856 bp) and intervening sequences (0-3872 bp), also accounts for the strain genotype in terms of its recA function. A bootstrap resampling technique was used to estimate confidence intervals for the correlation parameters. More than 92% of the predicted values were found to be within a pre-established +/-5-fold interval of deviation from experimental data. The correlation does not only provide a way to predict, with good accuracy, the recombination frequency, but also opens the way to improve insight into these processes.

  13. Frequency of Repeated Courses Its Relation to Persistence and Performance in Lebanon's Higher Education

    ERIC Educational Resources Information Center

    Nasser, Ramzi; Nauffal, Diane

    2012-01-01

    This study assesses the relationship between the frequency of repeating courses and students' performance in college. The study uses cohort data from academic years 2000/2001, 2001/2002, 2002/2003 and 2003/2004. We compared those who had repeated one, two and three courses on GPA and whether a relation exists of those who graduated/did not…

  14. Direct mapping of symbolic DNA sequence into frequency domain in global repeat map algorithm

    PubMed Central

    Glunčić, Matko; Paar, Vladimir

    2013-01-01

    The main feature of global repeat map (GRM) algorithm (www.hazu.hr/grm/software/win/grm2012.exe) is its ability to identify a broad variety of repeats of unbounded length that can be arbitrarily distant in sequences as large as human chromosomes. The efficacy is due to the use of complete set of a K-string ensemble which enables a new method of direct mapping of symbolic DNA sequence into frequency domain, with straightforward identification of repeats as peaks in GRM diagram. In this way, we obtain very fast, efficient and highly automatized repeat finding tool. The method is robust to substitutions and insertions/deletions, as well as to various complexities of the sequence pattern. We present several case studies of GRM use, in order to illustrate its capabilities: identification of α-satellite tandem repeats and higher order repeats (HORs), identification of Alu dispersed repeats and of Alu tandems, identification of Period 3 pattern in exons, implementation of ‘magnifying glass’ effect, identification of complex HOR pattern, identification of inter-tandem transitional dispersed repeat sequences and identification of long segmental duplications. GRM algorithm is convenient for use, in particular, in cases of large repeat units, of highly mutated and/or complex repeats, and of global repeat maps for large genomic sequences (chromosomes and genomes). PMID:22977183

  15. Repeatability and heritability of divergent recombination frequencies in the Iowa Stiff Stalk Synthetic (Zea mays L.).

    PubMed

    Hadad, R G; Pfeiffer, T W; Poneleit, C G

    1996-10-01

    Variability in recombination frequency was reported in the Iowa Stiff Stalk Synthetic. The objectives of the present research were to verify the differences in recombination frequency among individuals in the Iowa Stiff Stalk Synthetic maize population and to determine if the recombination frequency differences persisted among the S1 progeny. Testcrosses to measure male recombination frequency on three chromosomes (4, su1-c2; 5, a2-bt1-pr1; 9, sh1-bz1-wx1) were repeated for eight S0 individuals. Recombination frequencies were repeatably divergent among those individuals which were selected based on high or low recombination frequencies on specific chromosomes. Individuals which had been selected for long and short total map distances across the three chromosome regions produced repeatably divergent recombination frequencies only at the su1-c2 region. The recombination frequencies of the S1 lines, derived from the S0 individuals which had the most divergent recombination frequencies on a single chromosome, were significantly different. The broadsense heritability estimates derived from the regression of six S1 lines on six S0 individuals ranged from 0.69 to 0.20 for the five chromosome regions. We conclude that genetic differences for recombination frequency exist in this population and that modification by selection should be possible.

  16. Simulation of polarizer based on chiral medium for terahertz frequency range

    NASA Astrophysics Data System (ADS)

    Korolenko, S. Yu; Grebenchukov, A. N.; Masyukov, M. S.; Vozianova, A. V.; Khodzitsky, M. K.

    2016-08-01

    The work is devoted to development of the polarizer for terahertz frequency range. Chiral medium was simulated using the software package CST Microwave Studio by the method of Finite-Differences in Frequency Domain. The influence of geometry of chiral unit cell on the polarization of incident plane wave was investigated.

  17. Effects of Coaching and Repeated Trials on Maximum Phonational Frequency Range in Children.

    PubMed

    Ma, Estella P-M; Li, Trista K-Y

    2017-03-01

    Maximum phonational frequency range (MPFR) is the frequency range from the lowest to the highest pitch that an individual can produce. This study investigated the effects of coaching and repeated trials on MPFR in a group of school-age children. Thirty girls aged 6-11 years were randomly assigned into two groups: coaching and non-coaching. All of the participants produced the lowest and the highest phonational frequency for 10 times each. The participants in the coaching group were prompted by the clinician with verbal encouragement and a visual cue (hand-sweeping) to produce their maximum performance. The participants in the non-coaching group were simply asked to repeat the task 10 times. The clinician's coaching helped the participants in the coaching group reach their MPFR in fewer trials. The MPFRs elicited in 10 trials were significantly greater than those elicited in fewer trials. These findings suggested that coaching and repeated trials could facilitate the elicitation of MPFR more efficiently. Copyright © 2017. Published by Elsevier Inc.

  18. Populations of striatal medium spiny neurons encode vibrotactile frequency in rats: modulation by slow wave oscillations.

    PubMed

    Hawking, Thomas G; Gerdjikov, Todor V

    2013-01-01

    Dorsolateral striatum (DLS) is implicated in tactile perception and receives strong projections from somatosensory cortex. However, the sensory representations encoded by striatal projection neurons are not well understood. Here we characterized the contribution of DLS to the encoding of vibrotactile information in rats by assessing striatal responses to precise frequency stimuli delivered to a single vibrissa. We applied stimuli in a frequency range (45-90 Hz) that evokes discriminable percepts and carries most of the power of vibrissa vibration elicited by a range of complex fine textures. Both medium spiny neurons and evoked potentials showed tactile responses that were modulated by slow wave oscillations. Furthermore, medium spiny neuron population responses represented stimulus frequency on par with previously reported behavioral benchmarks. Our results suggest that striatum encodes frequency information of vibrotactile stimuli which is dynamically modulated by ongoing brain state.

  19. FIRST VERY LOW FREQUENCY DETECTION OF SHORT REPEATED BURSTS FROM MAGNETAR SGR J1550-5418

    SciTech Connect

    Tanaka, Y. T.; Takahashi, T.; Raulin, Jean-Pierre; Bertoni, Fernando C. P.; Fagundes, P. R.; Chau, J.; Schuch, N. J.; Hayakawa, M.; Hobara, Y.; Terasawa, T.

    2010-09-20

    We report on the first detection of ionospheric disturbances caused by short repeated gamma-ray bursts from the magnetar SGR J1550-5418. Very low frequency (VLF) radio wave data obtained in South America clearly show sudden amplitude and phase changes at the corresponding times of eight soft gamma-ray repeater bursts. Maximum amplitude and phase changes of the VLF signals appear to be correlated with the gamma-ray fluence. On the other hand, VLF recovery timescales do not show any significant correlation with the fluence, possibly suggesting that the bursts' spectra are not similar to each other. In summary, Earth's ionosphere can be used as a very large gamma-ray detector and the VLF observations provide us with a new method to monitor high-energy astrophysical phenomena without interruption such as Earth occultation.

  20. Numerical solution of an inverse medium scattering problem for Maxwell’s Equations at fixed frequency

    NASA Astrophysics Data System (ADS)

    Bao, Gang; Li, Peijun

    2009-07-01

    Consider a time-harmonic electromagnetic plane wave incident on a medium enclosed by a bounded domain in R3. In this paper, well-posedness of the variational problem for the direct scattering is examined. An energy estimate for the scattered field is obtained on which the Born approximation is based. A regularized recursive linearization method for the inverse medium scattering, which reconstructs the scatterer of an inhomogeneous medium from the boundary measurements of the scattered field, is developed. The algorithm requires only single-frequency data. Using an initial guess from the Born approximation, each update is obtained via continuation on the spatial frequency of a two-parameter family of plane waves by solving one direct problem and one adjoint problem of the Maxwell equation.

  1. High-frequency and hot-platen curing of medium-density fiberboards

    Treesearch

    R.R. Stevens; G.E. Woodson

    1977-01-01

    The effects of two curing methods- high-frequency heating and hot-platen heating- on the properties of a ure-formaldehyd-bonded medium-density fiberboard prepared with a southern-hardwoods furnish (50% southern red oak, 25% mockernut hickory, and 25% sweetgum) were studied. Boards of three densities- 38, 44, and 50 lb./ft.3- were cured by the two...

  2. Repeatability and relative validity of a quantitative food-frequency questionnaire among French adults.

    PubMed

    Barrat, Emmanuel; Aubineau, Nicolas; Maillot, Matthieu; Derbord, Elodie; Barthes, Pauline; Lescuyer, Jean-François; Boisseau, Nathalie; Peltier, Sébastien L

    2012-01-01

    A 50-item self-administered food frequency questionnaire (FFQ) was developed for French adults, to assess the intake of energy, 10 macronutrients, 11 vitamins, and 11 minerals, and to be used in the context of a medical consultation. To assess the repeatability and relative validity of this FFQ compared to a 7-day diet record (7-DR). A total of 54 and 100 French adults were included in the repeatability and validation studies, respectively. Repeatability was assessed using two FFQs, the second carried out 3 weeks after the first. In the validation study, subjects first completed the FFQ, then the 7-DR the following week. Energy and nutrient intakes were compared using Pearson correlation. The degree of misclassification by the FFQ, compared to the 7-DR, was calculated by a contingency table of quintiles. Bland-Altman plots assessed the correlation between FFQ and 7-DR across the intake range. Repeatability for intake, explored by Pearson correlation, was 0.62-0.90 (median: 0.81). Relative validity, as determined by Pearson correlation for the nutrient intake derived from the FFQ and 7-DR, was 0.36-0.80 (0.64). The FFQ tended to report higher fiber and micronutrient intake than 7-DR. Misclassification into opposite quintiles ranged 0-6% (1%), whereas classification into same or adjacent quintiles ranged 59-83% (74%). Bland-Altman plots showed good agreement for most nutrients across the range of intake. This new FFQ showed a high repeatability and good relative validity, and thanks to its short length, should be a useful tool for rapidly evaluating the nutrient intake of French adults.

  3. Repeatability and relative validity of a quantitative food-frequency questionnaire among French adults

    PubMed Central

    Barrat, Emmanuel; Aubineau, Nicolas; Maillot, Matthieu; Derbord, Élodie; Barthes, Pauline; Lescuyer, Jean-François; Boisseau, Nathalie; Peltier, Sébastien L.

    2012-01-01

    Background A 50-item self-administered food frequency questionnaire (FFQ) was developed for French adults, to assess the intake of energy, 10 macronutrients, 11 vitamins, and 11 minerals, and to be used in the context of a medical consultation. Objective To assess the repeatability and relative validity of this FFQ compared to a 7-day diet record (7-DR). Design A total of 54 and 100 French adults were included in the repeatability and validation studies, respectively. Repeatability was assessed using two FFQs, the second carried out 3 weeks after the first. In the validation study, subjects first completed the FFQ, then the 7-DR the following week. Energy and nutrient intakes were compared using Pearson correlation. The degree of misclassification by the FFQ, compared to the 7-DR, was calculated by a contingency table of quintiles. Bland–Altman plots assessed the correlation between FFQ and 7-DR across the intake range. Results Repeatability for intake, explored by Pearson correlation, was 0.62–0.90 (median: 0.81). Relative validity, as determined by Pearson correlation for the nutrient intake derived from the FFQ and 7-DR, was 0.36–0.80 (0.64). The FFQ tended to report higher fiber and micronutrient intake than 7-DR. Misclassification into opposite quintiles ranged 0–6% (1%), whereas classification into same or adjacent quintiles ranged 59–83% (74%). Bland–Altman plots showed good agreement for most nutrients across the range of intake. Conclusion This new FFQ showed a high repeatability and good relative validity, and thanks to its short length, should be a useful tool for rapidly evaluating the nutrient intake of French adults. PMID:23118710

  4. Alterations in the frequency of trinucleotide repeat dynamic mutations in offspring conceived through assisted reproductive technology.

    PubMed

    Zheng, Ying-Ming; Li, Li; Zhou, Li-Ming; Le, Fang; Cai, Li-Yi; Yu, Ping; Zhu, Yu-Rong; Liu, Xiao-Zhen; Wang, Li-Ya; Li, Le-Jun; Lou, Yi-Yun; Xu, Xiang-Rong; Lou, Hang-Ying; Zhu, Xiao-Ming; Sheng, Jian-Zhong; Huang, He-Feng; Jin, Fan

    2013-09-01

    How does the frequency of trinucleotide repeat dynamic mutations in offspring conceived through assisted reproductive technology (ART) compare with the frequency of these mutations in control offspring conceived from spontaneous pregnancies? There is a slight increase in dynamic mutation instability in offspring conceived through ART compared with the naturally conceived offspring. There is evidence to suggest that ART can increase the risk of birth defects and karyotypic abnormalities. However, the accumulating evidence of an association between ART and de novo genetic aberrations is controversial. A prospective clinical observational study was performed on 246 families recruited from an in vitro fertilisation (IVF) centre at a tertiary-care, university-affiliated teaching hospital from 2008 to 2012. The study included 147 ART families [75 IVF and 72 intracytoplasmic sperm injection (ICSI)] in the study group and 99 natural-conception families in the control group. Parental, umbilical cord and infant peripheral blood samples were collected, and the trinucleotide repeats of the ATN1, AR, ATXN1, ATXN3, Huntington, DMPK and FMR-1 genes were investigated between the generations; these genes were chosen due to their ability to undergo dynamic mutation. The frequencies and sizes of the mutational repeats, as well as the intergenerational instability, were measured. In 2466 transmissions identified in the ART offspring, 2.11% (n = 52/2466) of the alleles were unstable upon transmission, while in the control group offspring, the frequency of dynamic mutation was 0.77% (n = 10/1300); this difference was statistically significant (P < 0.01). The unstable transmission alleles were detected in 32 (2.48%) of the 1288 alleles from the IVF offspring and in 20 (1.70%) of the 1178 alleles from the ICSI offspring; both of these frequencies were significantly different from that of naturally conceived offspring (0.77%) (P < 0.01 and P < 0.05, respectively). However, there were no

  5. Modulation of Cross-Frequency Coupling by Novel and Repeated Stimuli in the Primate Ventrolateral Prefrontal Cortex

    PubMed Central

    Tsunada, Joji; Baker, Allison E.; Christison-Lagay, Kate L.; Davis, Selina J.; Cohen, Yale E.

    2011-01-01

    Adaptive behavior depends on an animal’s ability to ignore uninformative stimuli, such as repeated presentations of the same stimulus, and, instead, detect informative, novel stimuli in its environment. The primate prefrontal cortex (PFC) is known to play a central role in this ability. However, the neural mechanisms underlying the ability to differentiate between repeated and novel stimuli are not clear. We hypothesized that the coupling between different frequency bands of the local field potential (LFP) underlies the PFC’s role in differentiating between repeated and novel stimuli. Specifically, we hypothesized that whereas the presentation of a novel-stimulus induces strong cross-frequency coupling, repeated presentations of the same stimulus attenuates this coupling. To test this hypothesis, we recorded LFPs from the ventrolateral PFC (vPFC) of rhesus monkeys while they listened to a novel vocalization and repeated presentations of the same vocalization. We found that the cross-frequency coupling between the gamma-band amplitude and theta-band phase of the LFP was modulated by repeated presentations of a stimulus. During the first (novel) presentation of a stimulus, gamma-band activity was modulated by the theta-band phase. However, with repeated presentations of the same stimulus, this cross-frequency coupling was attenuated. These results suggest that cross-frequency coupling may play a role in the neural computations that underlie the differentiation between novel and repeated stimuli in the vPFC. PMID:21941517

  6. Envelope, phase, and frequency of ultrabroadband signal in a transparent medium

    SciTech Connect

    Shpolyanskiy, Yu. A.

    2010-10-15

    Analytical signal formalism is used for derivation of expressions for a complex envelope of radiation with ultrabroadband spectrum and an arbitrary waveform, which occur rarely in modern texts on nonlinear optics. It is demonstrated that the envelope, phase, and instantaneous frequency of femtosecond radiation pulses with an ultrabroad spectrum in a transparent medium can exhibit oscillations with a characteristic time scale considerably shorter than one field cycle at the central frequency. The interference of pulses and the generation of multiple frequencies are among phenomena giving rise to such features. It is marked that the violation of conditions imposed by the theory of analytical signal leads to ambiguity of the complex envelope.

  7. Threshold frequency of an electrically induced cramp increases following a repeated, localized fatiguing exercise.

    PubMed

    Stone, Marcus B; Edwards, Jeffrey E; Huxel, Kellie C; Cordova, Mitchell L; Ingersoll, Christopher D; Babington, J Patrick

    2010-02-01

    Though clinical observations and laboratory data provide some support for the neuromuscular imbalance theory of the genesis of exercise-associated muscle cramps, no direct evidence has been published. The purpose of this study was to determine the effect of local muscle fatigue on the threshold frequency of an electrically induced muscle cramp. To determine baseline threshold frequency, a cramp was electrically induced in the flexor hallucis brevis of 16 apparently healthy participants (7 males, 9 females; age 25.1 +/- 4.8 years). The testing order of control and fatigue conditions was counterbalanced. In the control condition, participants rested in a supine position for 30 min followed by another cramp induction to determine post-threshold frequency. In the fatigue condition, participants performed five bouts of great toe curls at 60% one-repetition maximum to failure with 1 min rest between bouts followed immediately by a post-threshold frequency measurement. Repeated-measures analysis of variance and simple main effects testing showed post-fatigue threshold frequency (32.9 +/- 11.7 Hz) was greater (P < 0.001) than pre-fatigue threshold frequency (20.0 +/- 7.7 Hz). An increase in threshold frequency seems to demonstrate a decrease in one's propensity to cramp following the fatigue exercise regimen used. These results contradict the proposed theory that suggests cramp propensity should increase following fatigue. However, differences in laboratory versus clinical fatiguing exercise and contributions from other sources, as well as the notion of a graded response to fatiguing exercise, on exercise-associated muscle cramp and electrically induced muscle cramp should be considered.

  8. Improvement in medium long-term frequency stability of the integrating sphere cold atom clock

    NASA Astrophysics Data System (ADS)

    Liu, Peng; Cheng, Huadong; Meng, Yanling; Wan, Jinyin; Xiao, Ling; Wang, Xiumei; Wang, Yaning; Liu, Liang

    2016-07-01

    The medium-long term frequency stability of the integrating sphere cold atom clock was improved.During the clock operation, Rb atoms were cooled and manipulated using cooling light diffusely reflected by the inner surface of a microwave cavity in the clock. This light heated the cavity and caused a frequency drift from the resonant frequency of the cavity. Power fluctuations of the cooling light led to atomic density variations in the cavity's central area, which increased the clock frequency instability through a cavity pulling effect. We overcame these limitations with appropriate solutions. A frequency stability of 3.5E-15 was achieved when the integrating time ? increased to 2E4 s.

  9. Time-domain electromagnetic energy in a frequency-dispersive left-handed medium

    NASA Astrophysics Data System (ADS)

    Cui, Tie Jun; Kong, Jin Au

    2004-11-01

    From Maxwell’s equations and the Poynting theorem, the time-domain electric and magnetic energy densities are generally defined in the frequency-dispersive media based on the conservation of energy. As a consequence, a general definition of electric and magnetic energy is proposed. Comparing with existing formulations of electric and magnetic energy in frequency-dispersive media, the new definition is more reasonable and is valid in any case. Using the new definition and staring from the equation of motion, we have shown rigorously that the total energy density and the individual electric and magnetic energy densities are always positive in a realistic artificial left-handed medium (LHM) [

    R. A. Shelby, D. R. Smith, and S. Schultz, Science 292, 77 (2001)
    ], which obeys actually the Lorentz medium model, although such a LHM has negative permittivity and negative permeability simultaneously in a certain frequency range. We have also shown that the conservation of energy is not violated in LHM. The earlier conclusions can be easily extended to the Drude medium model and the cold plasma medium model. Through an exact analysis of a one-dimensional transient current source radiating in LHM, numerical results are given to demonstrate that the work done by source, the power flowing outwards a surface, and the electric and magnetic energy stored in a volume are all positive in the time domain.

  10. Unraveling the Intricacies of Cascadia Slow-Slip Rupture Using Repeating Low-Frequency Earthquakes

    NASA Astrophysics Data System (ADS)

    Creager, K. C.; Sweet, J. R.; Chestler, S.; Houston, H.; Vidale, J. E.

    2013-12-01

    Using data from the 2-year Array of Arrays and the 6-year CAFE seismic experiments on the Olympic Peninsula, Washington, we have identified and located nine groups (families) of repeating Low-Frequency Earthquakes (LFEs). Each family locates within a few km of the plate interface as estimated by active-source wide-angle reflections (Preston et al., Science, 2003) and repeats 100s to 10,000 times in intriguing temporal patterns. At the down-dip end they light up every 1-2 weeks, each with 10s to 100s of LFE repeats, during typical time scales of about one hour. Double-difference locations indicate the LFEs are constrained to a linear patch 2 km long, on the plate interface elongated in the direction of relative plate motion. In contrast, the up-dip-most LFE family lights up primarily during the big 14-month Episodic Tremor and Slip (ETS) events. It repeatedly exhibits a pattern of being quiet for 14 months, then lighting up with hundreds of repeats during a few hour period, which we interpret as the main ETS rupture front passing the location of the LFE family. This is followed by a five-day period of quiescence punctuated by about a dozen short-duration episodes of frenzied LFE activity. Monitoring LFE families within 20 km of each other, we find their bursts of activity correlate roughly with each other, but with time lags of 10s of minutes to hours. We interpret this activity as the passage of streaks and Rapid Tremor Reversals that occur during the 5 days after the main rupture front passes. After this time, either the stress is relieved, or the fault has healed and the LFE family is quiet for another 14 months. The magnitudes of the down-dip LFEs, based on S-wave amplitudes, range from -1 to 1. In the limited magnitude range over which our LFE catalog is complete (0.6 magnitude units) they appear to follow a Gutenberg-Richter distribution with a very large b-value of 4. There is a systematic pattern of short-duration LFE activity happening often (every 1

  11. Low-frequency asymptotic analysis of seismic reflection from afluid-saturated medium

    SciTech Connect

    Silin, D.B.; Korneev, V.A.; Goloshubin, G.M.; Patzek, T.W.

    2004-04-14

    Reflection of a seismic wave from a plane interface betweentwo elastic media does not depend on the frequency. If one of the mediais poroelastic and fluid-saturated, then the reflection becomesfrequency-dependent. This paper presents a low-frequency asymptoticformula for the reflection of seismic plane p-wave from a fluid-saturatedporous medium. The obtained asymptotic scaling of the frequency-dependentcomponent of the reflection coefficient shows that it is asymptoticallyproportional to the square root of the product of the reservoir fluidmobility and the frequency of the signal. The dependence of this scalingon the dynamic Darcy's law relaxation time is investigated as well.Derivation of the main equations of the theory of poroelasticity from thedynamic filtration theory reveals that this relaxation time isproportional to Biot's tortuosity parameter.

  12. Low-frequency Carbon Radio Recombination Lines. II. The Diffuse Interstellar Medium

    NASA Astrophysics Data System (ADS)

    Salgado, F.; Morabito, L. K.; Oonk, J. B. R.; Salas, P.; Toribio, M. C.; Röttgering, H. J. A.; Tielens, A. G. G. M.

    2017-03-01

    In the second paper of the series, we have modeled low-frequency carbon radio recombination lines (CRRLs) from the interstellar medium. Anticipating the Low Frequency Array survey of Galactic CRRLs, we focus our study on the physical conditions of the diffuse, cold neutral medium. We have used the improved departure coefficients computed in the first paper of the series to calculate line-to-continuum ratios. The results show that the line width and integrated optical depths of CRRLs are sensitive probes of the electron density, gas temperature, and emission measure of the cloud. Furthermore, the ratio of CRRL to the [C ii] at the 158 μm line is a strong function of the temperature and density of diffuse clouds. Guided by our calculations, we analyze CRRL observations and illustrate their use with data from the literature.

  13. Mesospheric wind measurements using a medium-frequency imaging Doppler interferometer

    NASA Technical Reports Server (NTRS)

    Adams, G. W.; scatterers.

    1986-01-01

    Wind results from a medium-frequency radar operated as an imaging Doppler interferometer are presented. Ten independent antennas, together with mesospheric wind motions, were used to Doppler-sort and then echo-locate individual scattering points. The three-dimensional location and radial velocity of each discrete scattering point was determined. Mean winds were then determined by a least squares fit to the radial velocities of the ensemble of scatterers.

  14. Improving Ambiguity Resolution for Medium Baselines Using Combined GPS and BDS Dual/Triple-Frequency Observations.

    PubMed

    Gao, Wang; Gao, Chengfa; Pan, Shuguo; Wang, Denghui; Deng, Jiadong

    2015-10-30

    The regional constellation of the BeiDou navigation satellite system (BDS) has been providing continuous positioning, navigation and timing services since 27 December 2012, covering China and the surrounding area. Real-time kinematic (RTK) positioning with combined BDS and GPS observations is feasible. Besides, all satellites of BDS can transmit triple-frequency signals. Using the advantages of multi-pseudorange and carrier observations from multi-systems and multi-frequencies is expected to be of much benefit for ambiguity resolution (AR). We propose an integrated AR strategy for medium baselines by using the combined GPS and BDS dual/triple-frequency observations. In the method, firstly the extra-wide-lane (EWL) ambiguities of triple-frequency system, i.e., BDS, are determined first. Then the dual-frequency WL ambiguities of BDS and GPS were resolved with the geometry-based model by using the BDS ambiguity-fixed EWL observations. After that, basic (i.e., L1/L2 or B1/B2) ambiguities of BDS and GPS are estimated together with the so-called ionosphere-constrained model, where the ambiguity-fixed WL observations are added to enhance the model strength. During both of the WL and basic AR, a partial ambiguity fixing (PAF) strategy is adopted to weaken the negative influence of new-rising or low-elevation satellites. Experiments were conducted and presented, in which the GPS/BDS dual/triple-frequency data were collected in Nanjing and Zhengzhou of China, with the baseline distance varying from about 28.6 to 51.9 km. The results indicate that, compared to the single triple-frequency BDS system, the combined system can significantly enhance the AR model strength, and thus improve AR performance for medium baselines with a 75.7% reduction of initialization time on average. Besides, more accurate and stable positioning results can also be derived by using the combined GPS/BDS system.

  15. Allele Frequencies for 15 Short Tandem Repeat Loci in Representative Sample of Croatian Population

    PubMed Central

    Projić, Petar; Škaro, Vedrana; Šamija, Ivana; Pojskić, Naris; Durmić-Pašić, Adaleta; Kovačević, Lejla; Bakal, Narcisa; Primorac, Dragan; Marjanović, Damir

    2007-01-01

    Aim To study the distribution of allele frequencies of 15 short tandem repeat (STR) loci in a representative sample of the Croatian population. Methods A total of 195 unrelated Caucasian individuals born in Croatia, from 14 counties and the City of Zagreb, were sampled for the analysis. All the tested individuals were voluntary donors. Buccal swab was used as the DNA source. AmpFlSTR® Identifiler® was applied to simultaneously amplify 15 STR loci. Total reaction volume was 12.5 μL. The polymerase chain reaction (PCR) amplification was carried out in PE Gene Amp PCR System Thermal Cycler. Electrophoresis of the amplification products was preformed on an ABI PRISM 3130 Genetic Analyzer. After PCR amplification and separation by electrophoresis, raw data were compiled, analyzed, and numerical allele designations of the profiles were obtained. Deviation from Hardy-Weinberg equilibrium, observed and expected heterozygosity, power of discrimination, and power of exclusion were calculated. Bonferroni’s correction was used before each comparative analysis. Results We compared Croatian data with those obtained from geographically neighboring European populations. The significant difference (at P<0.01) in allele frequencies was recorded only between the Croatian and Slovenian populations for vWA locus. There was no significant deviation from Hardy-Weinberg equilibrium for all the observed loci. Conclusion Obtained population data concurred with the expected “STR data frame” for this part of Europe. PMID:17696301

  16. Projection system design of medium-frequency wave dynamic infrared scene projector based on digital micromirror device

    NASA Astrophysics Data System (ADS)

    Li, Yandong; Fu, Yuegang; Liu, Zhiying; Zhang, Xueli; Lu, Jing

    2014-11-01

    Infrared target simulator can simulate the real target and background infrared imaging in the laboratory, offer the exactly controlled and repeated condition for the testing and evaluation to the performance of the infrared detection equipment, testing each performance index during the development phase. The characteristics of the infrared optical systems were analyzed. The system parameters which worked at long wave with 1024 ×768 DMD were given. An optical system of medium-frequency wave dynamic infrared scene projector based on the digital micromirror device (DMD) was given by using secondary imaging. The optical system was designed with a long distance of exit pupil, large working distance and short focal length .The exit pupil distance of the system could reach 740 mm, the entrance pupil aperture is 26.5 mm, and the field angle is 12°x9°. In order to get better resolution and image quality, an optimization result and the system aberration were obtained by the ZEMAX software. The whole optical system using the materials of Ge and Si consisted of 6 elements. It was designed with a refractive hybrid system to reduce color aberration and thermal aberration in the temperature range of 10-40¬°. The projector optical system takes advantage of high quality image with MTF better than 0.6 at a spatial frequency of 16 lp/mm in the full field of view, and the distortion is better than 0.5% which is operational within the working temperature.

  17. Variation in high-frequency wave radiation from small repeating earthquakes as revealed by cross-spectral analysis

    NASA Astrophysics Data System (ADS)

    Hatakeyama, Norishige; Uchida, Naoki; Matsuzawa, Toru; Okada, Tomomi; Nakajima, Junichi; Matsushima, Takeshi; Kono, Toshio; Hirahara, Satoshi; Nakayama, Takashi

    2016-11-01

    We examined the variation in the high-frequency wave radiation for three repeating earthquake sequences (M = 3.1-4.1) in the northeastern Japan subduction zone by waveform analyses. Earthquakes in each repeating sequence are located at almost the same place and show low-angle thrust type focal mechanisms, indicating that they represent repeated ruptures of a seismic patch on the plate boundary. We calculated cross-spectra of the waveforms and obtained the phases and coherences for pairs of events in the respective repeating sequences in order to investigate the waveform differences. We used waveform data sampled at 1 kHz that were obtained from temporary seismic observations we conducted immediately after the 2011 Tohoku earthquake near the source area. For two repeating sequences, we found that the interevent delay times for the two waveforms in a frequency band higher than the corner frequencies are different from those in a lower frequency band for particular event pairs. The phases and coherences show that there are coherent high-frequency waves for almost all the repeaters regardless of the high-frequency delays. These results indicate that high-frequency waves are always radiated from the same vicinity (subpatch) for these events but the time intervals between the ruptures of the subpatch and the centroid times can vary. We classified events in the sequence into two subgroups according to the high-frequency band interevent delays relative to the low-frequency band. For one sequence, we found that all the events that occurred just after (within 11 days) larger nearby earthquakes belong to one subgroup while other events belong to the other subgroup. This suggests that the high-frequency wave differences were caused by stress perturbations due to the nearby earthquakes. In summary, our observations suggest that high-frequency waves from the repeating sequence are radiated not from everywhere but from a long-duration subpatch within the seismic slip area. The

  18. Emergency and operational low and medium frequency band radio communications system for underground mines

    SciTech Connect

    Stolarczyk, L.G. )

    1991-07-01

    This paper reports on a minewide low- and medium-frequency radio system has been developed and installed in coal and metalliferous mines. The radio system established reliable emergency communications between mine personnel on the surface, in working areas, or traveling in designated escapeway. The system also provides operational communications to improve coordination among working groups in the underground mining complex. The radio system utilizes two robust radio signal transmission modes to establish underground radio coverage areas. The seam transmission mode occurs when layers of coal, trona, potash, quartzite, or gilsonite are surrounded by more electrically conductive sediment layers. The layering forms a natural waveguide for transmission of medium-frequency (MF) band (300 to 23 000 kHz) radio signals. The conductor transmission line mode waveguide occurs when electrical conductors, such as ac power distribution cable, conveyor belt structures, steel pipe, and rail are in place in mine passageways. The conductor transmission waveguide attenuation rate is lowest in the low-frequency and (30 to 300 kHz). Safety is inherent in the system design since robust radio signal transmission modes are likely to survive events such as rock falls, fire, or explosion. Since the conductor utilities are necessary parts of the underground mine infrastructure, transmission line installation and maintenance cost can be avoided in the radio system.

  19. Low frequency sound scattering from spherical assemblages of bubbles using effective medium theory.

    PubMed

    Hahn, Thomas R

    2007-12-01

    The determination of the acoustic field scattered by an underwater assembly of gas bubbles or similar resonant monopole scatterers is of considerable theoretical and practical interest. This problem is addressed from a theoretical point of view within the framework of the effective medium theory for the case of spherically shaped assemblages. Although being valid more generally, the effective medium theory is an ideal instrument to study multiple scattering effects such as low frequency collective resonances, acoustically coupled breathing modes of the entire assembly. Explicit expressions for the scattering amplitude and cross sections are derived, as well as closed form expressions for the resonance frequency and spectral shape of the fundamental collective mode utilizing analytical S-matrix methods. This approach allows, in principle, a simultaneous inversion for the assembly radius and void fraction directly from the scattering cross sections. To demonstrate the validity of the approach, the theory is applied to the example of idealized, spherically shaped schools of swim bladder bearing fish. The analytic results of the theory are compared to numerical first-principle benchmark computations and excellent agreement is found, even for densely packed schools and frequencies across the bladder resonance.

  20. Poly(3-Hydroxybutyrate) Production in Repeated fed-Batch with Cell Recycle Using a Medium with low Carbon Source Concentration.

    PubMed

    Ienczak, Jaciane Lutz; Schmidt, Mélodi; Quines, Luci Kelin; Zanfonato, Kellen; da Cruz Pradella, José Geraldo; Schmidell, Willibaldo; de Aragao, Glaucia Maria Falcao

    2016-01-01

    Among approaches applied to obtain high productivity and low production costs in bioprocesses are high cell density and the use of low cost substrates. Usually low cost substrates, as waste/agroindustrial residues, have low carbon concentration, which leads to a difficulty in operating bioprocesses. Real time control of process for intracellular products is also difficult. The present study proposes a strategy of repeated fed-batch with cell recycle to attain high cell density of Cupriavidus necator and high poly(3-hydroxybutyrate) (P(3HB)) productivity, using a substrate with low carbon source concentration (90 g l(-1)). Also, the use of the oxygen uptake rate data was pointed out as an on line solution for process control, once P(3HB) is an intracellular product. The results showed that total biomass (X), residual biomass (Xr) and P(3HB) values at the end of the culture were 61.6 g l(-1), 19.3 g l(-1) and 42.4 g l(-1) respectively, equivalent to 68.8 % of P(3HB) in the cells, and P(3HB) productivity of 1.0 g l(-1) h(-1). Therefore, the strategy proposed was efficient to achieve high productivity and high polymer content from a medium with low carbon source concentration.

  1. Determination of medium electrical properties through full-wave modelling of frequency domain reflectrometry data

    NASA Astrophysics Data System (ADS)

    André, Frédéric; Lambot, Sébastien

    2015-04-01

    Accurate knowledge of the shallow soil properties is of prime importance in agricultural, hydrological and environmental engineering. During the last decade, numerous geophysical techniques, either invasive or resorting to proximal or remote sensing, have been developed and applied for quantitative characterization of soil properties. Amongst them, time domain reflectrometry (TDR) and frequency domain reflectometry (FDR) are recognized as standard techniques for the determination of soil dielectric permittivity and electrical conductivity, based on the reflected electromagnetic waves from a probe inserted into the soil. TDR data were first commonly analyzed in the time domain using methods considering only a part of the waveform information. Later, advancements have led to the possibility of analyzing the TDR signal through full-wave inverse modeling either in the time or the frequency domains. A major advantage of FDR compared to TDR is the possibility to increase the bandwidth, thereby increasing the information content of the data and providing more detailed characterization of the medium. Amongst the recent works in this field, Minet et al. (2010) developed a modeling procedure for processing FDR data based on an exact solution of Maxwell's equations for wave propagation in one-dimensional multilayered media. In this approach, the probe head is decoupled from the medium and is fully described by characteristic transfer functions. The authors successfully validated the method for homogeneous sand subject to a range of water contents. In the present study, we further validated the modelling approach using reference liquids with well-characterized frequency-dependent electrical properties. In addition, the FDR model was coupled with a dielectric mixing model to investigate the ability of retrieving water content, pore water electrical conductivity and sand porosity from inversion of FDR data acquired in sand subject to different water content levels. Finally, the

  2. Short tandem repeat profiling: part of an overall strategy for reducing the frequency of cell misidentification

    PubMed Central

    Nims, Raymond W.; Sykes, Greg; Cottrill, Karin; Ikonomi, Pranvera

    2010-01-01

    The role of cell authentication in biomedical science has received considerable attention, especially within the past decade. This quality control attribute is now beginning to be given the emphasis it deserves by granting agencies and by scientific journals. Short tandem repeat (STR) profiling, one of a few DNA profiling technologies now available, is being proposed for routine identification (authentication) of human cell lines, stem cells, and tissues. The advantage of this technique over methods such as isoenzyme analysis, karyotyping, human leukocyte antigen typing, etc., is that STR profiling can establish identity to the individual level, provided that the appropriate number and types of loci are evaluated. To best employ this technology, a standardized protocol and a data-driven, quality-controlled, and publically searchable database will be necessary. This public STR database (currently under development) will enable investigators to rapidly authenticate human-based cultures to the individual from whom the cells were sourced. Use of similar approaches for non-human animal cells will require developing other suitable loci sets. While implementing STR analysis on a more routine basis should significantly reduce the frequency of cell misidentification, additional technologies may be needed as part of an overall authentication paradigm. For instance, isoenzyme analysis, PCR-based DNA amplification, and sequence-based barcoding methods enable rapid confirmation of a cell line’s species of origin while screening against cross-contaminations, especially when the cells present are not recognized by the species-specific STR method. Karyotyping may also be needed as a supporting tool during establishment of an STR database. Finally, good cell culture practices must always remain a major component of any effort to reduce the frequency of cell misidentification. PMID:20927602

  3. Improving Ambiguity Resolution for Medium Baselines Using Combined GPS and BDS Dual/Triple-Frequency Observations

    PubMed Central

    Gao, Wang; Gao, Chengfa; Pan, Shuguo; Wang, Denghui; Deng, Jiadong

    2015-01-01

    The regional constellation of the BeiDou navigation satellite system (BDS) has been providing continuous positioning, navigation and timing services since 27 December 2012, covering China and the surrounding area. Real-time kinematic (RTK) positioning with combined BDS and GPS observations is feasible. Besides, all satellites of BDS can transmit triple-frequency signals. Using the advantages of multi-pseudorange and carrier observations from multi-systems and multi-frequencies is expected to be of much benefit for ambiguity resolution (AR). We propose an integrated AR strategy for medium baselines by using the combined GPS and BDS dual/triple-frequency observations. In the method, firstly the extra-wide-lane (EWL) ambiguities of triple-frequency system, i.e., BDS, are determined first. Then the dual-frequency WL ambiguities of BDS and GPS were resolved with the geometry-based model by using the BDS ambiguity-fixed EWL observations. After that, basic (i.e., L1/L2 or B1/B2) ambiguities of BDS and GPS are estimated together with the so-called ionosphere-constrained model, where the ambiguity-fixed WL observations are added to enhance the model strength. During both of the WL and basic AR, a partial ambiguity fixing (PAF) strategy is adopted to weaken the negative influence of new-rising or low-elevation satellites. Experiments were conducted and presented, in which the GPS/BDS dual/triple-frequency data were collected in Nanjing and Zhengzhou of China, with the baseline distance varying from about 28.6 to 51.9 km. The results indicate that, compared to the single triple-frequency BDS system, the combined system can significantly enhance the AR model strength, and thus improve AR performance for medium baselines with a 75.7% reduction of initialization time on average. Besides, more accurate and stable positioning results can also be derived by using the combined GPS/BDS system. PMID:26528977

  4. Development of a practical and cost-effective medium for bioethanol production from the seaweed hydrolysate in surface-aerated fermentor by repeated-batch operation.

    PubMed

    Lee, Sang-Eun; Lee, Ji-Eun; Shin, Ga-Young; Choi, Woon Yong; Kang, Do Hyung; Lee, Hyeon-Yong; Jung, Kyung-Hwan

    2012-01-01

    To develop a practical and cost-effective medium for bioethanol production from the hydrolysate of seaweed Sargassum sagamianum, we investigated the feasibility and performance of bioethanol production in CSL (cornsteep liquor)-containing medium, where yeast Pichia stipitis was used and the repeated batch was carried out in a surface-aerated fermentor. The optimal medium replacement time during the repeated operation was determined to be 36 h, and the surface aeration rates were 30 and 100 ml/min. Under these conditions, the repeatedbatch operation was successfully carried out for 6 runs (216 h), in which the maximum bioethanol concentrations reached about 11-12 g/l at each batch operation. These results demonstrated that bioethanol production could be carried out repeatedly and steadily for 216 h. In these experiments, the total cumulative bioethanol production was 57.9 g and 58.0 g when the surface aeration rates were 30 ml/min and 100 ml/min, respectively. In addition, the bioethanol yields were 0.43 (about 84% of theoretical value) and 0.44 (about 86% of theoretical value) when the surface aeration rates were 30 ml/min and 100 ml/min, respectively. CSL was successfully used as a medium ingredient for the bioethanol production from the hydrolysate of seaweed Sargassum sagamianum, indicating that this medium may be practical and cost-effective for bioethanol production.

  5. Trinucleotide repeats at the FRAXF locus: Frequency and distribution in the general population

    SciTech Connect

    Holden, J.J.A.; Walker, M.

    1996-08-09

    FRAXF the third X-chromosomal fragile site to be cloned, has been shown to harbor a polymorphic compound triplet array: (GC-CGTC){sub n} (GCC){sub n}. Expansion and methylation of the GCC-repeat and the neighboring CpG-rich region result in chromosomal fragility. DNAs from 500 anonymous consecutive newborn males were examined to determine the incidence of various repeat numbers. The range of repeats was from 10-38, with the most common alleles having 14 (52.7%), 12 (16.6%), 21 (9.0%), and 22 (5.2%) triplets. Based on the distribution of repeat numbers, we suggest that the 21-repeat allele resulted from hairpin formation involving 7 GCC-repeats in a 14-repeat allele, accompanied by polymerase slippage. Examination of dinucleotide repeats near the FRAXF repeat will be important in testing this hypothesis. Since the clinical phenotype, if any, of FRAXF is unknown, this database will also be valuable for comparisons with repeat numbers in individuals from special populations. 20 refs., 1 fig., 1 tab.

  6. A family of repeating low-frequency earthquakes at the downdip edge of tremor and slip

    NASA Astrophysics Data System (ADS)

    Sweet, Justin R.; Creager, Kenneth C.; Houston, Heidi

    2014-09-01

    analyze an isolated low-frequency earthquake (LFE) family located at the downdip edge of the main episodic tremor and slip (ETS) zone beneath western Washington State. The 9000 individual LFEs from this repeating family cluster into 198 swarms that recur roughly every week. Cumulative LFE seismic moment for each swarm correlates strongly with the time until the next swarm, suggesting that these LFE swarms are time predictable. Precise double-difference relative locations for 700 individual LFEs within this family show a distribution that is approximately 2 km long and 500 m wide, elongated parallel to the relative plate convergence direction. The distribution of locations (<300 m vertical spread) lies within a few hundred meters of two different plate interface models and has a similar dip. Peak-to-peak LFE S wave amplitudes range from 0.2 to 18 nm. Individual LFEs exhibit a trend of increasing magnitude during swarms, with smaller events at the beginning and the largest events toward the end. The largest LFEs cluster in a small area (300 m radius) coincident with maximum LFE density. We propose that the less-concentrated smaller LFEs act to unlock this patch core, allowing it to fully rupture in the largest LFEs, usually toward the end of a swarm. We interpret the patch responsible for producing these LFEs as a subducted seamount on the downgoing Juan de Fuca (JdF) plate. LFE locking efficiency (slip estimated during 5 years from summing LFE seismic moment divided by plate-rate-determined slip) is at most 20% and is highly concentrated in two ˜50 m radius locations in the larger patch core. Estimated individual LFE stress drops range from 1 to 20 kPa, but could also be significantly larger.

  7. Theoretical study of the infrared frequencies of crystalline methyl acetate under interstellar medium conditions.

    PubMed

    Narayanan, Radhika; Inomata, Kensuke; Gopakumar, Geetha; Sivaraman, Bhalamurugan; Zempo, Yasunari; Hada, Masahiko

    2016-01-15

    Identification of methyl acetate in the interstellar medium (ISM) and its spectroscopic studies have prompted us to investigate the structure of crystalline methyl acetate using numerical calculations. Here, we present a theoretical study of the structure of crystalline methyl acetate and its isotopologues and compare the calculated infrared (IR) spectra with the available experimental data. The optimized structure and vibrational properties were calculated using SIESTA software at 0 K. In the optimization process, the Perdew-Burke-Ernzerhof functional and conjugate gradient methods were used with double zeta polarization basis functions. After optimization of the periodic structure, the vibrational frequencies and normal modes were calculated within the harmonic approximation. Using the calculated results, we refine the mode assignments of experimental work on crystalline methyl acetate and determine the low frequency modes (below 650 cm(-1)). To investigate the accuracy of the pseudopotential and confirm the IR frequencies, we performed molecular calculations using a periodic model of methyl acetate and its isotopologues using SIESTA and compared them with results obtained from Gaussian 09 (all electron method) calculations. Finally, we assigned the vibrational modes of crystalline CD3-COO-CH3 and CH3-COO-CD3, for which experimental data are not available in the crystalline phase under ISM conditions. For all of the calculation methods, the IR vibrational modes of molecular and crystalline methyl acetate and its isotopologues were in good agreement with the available experimental data and predict the unavailable values. Copyright © 2015 Elsevier B.V. All rights reserved.

  8. Theoretical study of the infrared frequencies of crystalline methyl acetate under interstellar medium conditions

    NASA Astrophysics Data System (ADS)

    Narayanan, Radhika; Inomata, Kensuke; Gopakumar, Geetha; Sivaraman, Bhalamurugan; Zempo, Yasunari; Hada, Masahiko

    2016-01-01

    Identification of methyl acetate in the interstellar medium (ISM) and its spectroscopic studies have prompted us to investigate the structure of crystalline methyl acetate using numerical calculations. Here, we present a theoretical study of the structure of crystalline methyl acetate and its isotopologues and compare the calculated infrared (IR) spectra with the available experimental data. The optimized structure and vibrational properties were calculated using SIESTA software at 0 K. In the optimization process, the Perdew-Burke-Ernzerhof functional and conjugate gradient methods were used with double zeta polarization basis functions. After optimization of the periodic structure, the vibrational frequencies and normal modes were calculated within the harmonic approximation. Using the calculated results, we refine the mode assignments of experimental work on crystalline methyl acetate and determine the low frequency modes (below 650 cm- 1). To investigate the accuracy of the pseudopotential and confirm the IR frequencies, we performed molecular calculations using a periodic model of methyl acetate and its isotopologues using SIESTA and compared them with results obtained from Gaussian 09 (all electron method) calculations. Finally, we assigned the vibrational modes of crystalline CD3-COO-CH3 and CH3-COO-CD3, for which experimental data are not available in the crystalline phase under ISM conditions. For all of the calculation methods, the IR vibrational modes of molecular and crystalline methyl acetate and its isotopologues were in good agreement with the available experimental data and predict the unavailable values.

  9. A Hybrid Approach for Efficient Modeling of Medium-Frequency Propagation in Coal Mines

    PubMed Central

    Brocker, Donovan E.; Sieber, Peter E.; Waynert, Joseph A.; Li, Jingcheng; Werner, Pingjuan L.; Werner, Douglas H.

    2015-01-01

    An efficient procedure for modeling medium frequency (MF) communications in coal mines is introduced. In particular, a hybrid approach is formulated and demonstrated utilizing ideal transmission line equations to model MF propagation in combination with full-wave sections used for accurate simulation of local antenna-line coupling and other near-field effects. This work confirms that the hybrid method accurately models signal propagation from a source to a load for various system geometries and material compositions, while significantly reducing computation time. With such dramatic improvement to solution times, it becomes feasible to perform large-scale optimizations with the primary motivation of improving communications in coal mines both for daily operations and emergency response. Furthermore, it is demonstrated that the hybrid approach is suitable for modeling and optimizing large communication networks in coal mines that may otherwise be intractable to simulate using traditional full-wave techniques such as moment methods or finite-element analysis. PMID:26478686

  10. Medium frequency propagation characteristics of different transmission lines in an underground coal mine

    PubMed Central

    Li, Jingcheng; Waynert, Joseph A.; Whisner, Bruce G.

    2015-01-01

    A medium frequency (MF) communication system operating in an underground coal mine couples its signals to a long conductor, which acts as an MF transmission line (TL) in a tunnel to permit communications among transceivers along the line. The TL is generally the longest signal path for the system, and its propagation characteristics will have a major impact on the performance of the MF communication system. In this study, the propagation characteristics of three types of MF TLs in two layouts—on the roof and on the floor of a coal mine tunnel—were obtained in an effort to understand the propagation characteristics of different TLs in different locations. The study confirmed a low MF signal loss on all of these TLs. The study also found that the TLs in different layouts had substantially different propagation characteristics. The propagation characteristics of these different TLs in different layouts are presented in the paper. PMID:26203349

  11. Evaluation of frequency-dependent ultrasound attenuation in transparent medium using focused shadowgraph technique

    NASA Astrophysics Data System (ADS)

    Iijima, Yukina; Kudo, Nobuki

    2017-07-01

    Acoustic fields of a short-pulsed ultrasound propagating through a transparent medium with ultrasound attenuation were visualized by the focused shadowgraph technique. A brightness waveform and its spatial integrations were derived from a visualized field image and compared with a pressure waveform measured by a membrane hydrophone. The experimental results showed that first-order integration of the brightness wave has good agreement with the pressure waveforms. Frequency-dependent attenuation of the pulse propagating through castor oil was derived from brightness and pressure waveforms, and attenuation coefficients determined from focused shadowgraphy and hydrophone techniques showed good agreement. The results suggest the usefulness of the shadowgraph technique not only for the visualization of ultrasound fields but also for noncontact estimation of rough pressure waveforms and correct ultrasound attenuation.

  12. Formation of a high-frequency discharge in the active metal vapor laser medium

    NASA Astrophysics Data System (ADS)

    Yudin, N. A.; Kostyrya, I. D.; Polunin, Yu. P.; Yudin, N. N.

    2013-07-01

    The evolution of an electric discharge in the active self-terminating metal atom laser medium is examined. Electrodes in the gas discharge tube are placed in cold buffer zones at a distance of several centimeters from the thermally insulated gas discharge channel. It is shown that an abnormal glow discharge is initiated in the cold buffer zones, as capacitive components of the discharge circuit charge from a storage capacitor. In this case, the current-voltage characteristic of the abnormal glow discharge in the cold buffer zones exhibiting a steep current growth and sharp voltage drop is illustrated in the right-hand branch of the Pashcen curve. These processes cause the discharge to pinch. As the capacitive components charge from the storage capacitor for the electrodes in the gas discharge tube placed in the cold buffer zones at a distance of ≤1-3 mm from the thermally insulated gas discharge channel, an obstructed discharge is formed in the cold zones. On ignition of the discharge shown in the right-hand branch of the Pashcen curve the current accompanied by gas heating eliminates the contraction of the discharge in the cold buffer zones and initiates a high-frequency discharge in the active medium since the instant the breakdown (pinch) occurs. In this case, the current-voltage characteristic is demonstrated in the left-hand branch of the Pashcen curve.

  13. Superconducting radio-frequency cavities made from medium and low-purity niobium ingots

    NASA Astrophysics Data System (ADS)

    Ciovati, Gianluigi; Dhakal, Pashupati; Myneni, Ganapati R.

    2016-06-01

    Superconducting radio-frequency cavities made of ingot niobium with residual resistivity ratio (RRR) greater than 250 have proven to have similar or better performance than fine-grain Nb cavities of the same purity, after standard processing. The high purity requirement contributes to the high cost of the material. As superconducting accelerators operating in continuous-wave typically require cavities to operate at moderate accelerating gradients, using lower purity material could be advantageous not only to reduce cost but also to achieve higher Q 0-values. In this contribution we present the results from cryogenic RF tests of 1.3-1.5 GHz single-cell cavities made of ingot Nb of medium (RRR = 100-150) and low (RRR = 60) purity from different suppliers. Cavities made of medium-purity ingots routinely achieved peak surface magnetic field values greater than 70 mT with an average Q 0-value of 2 × 1010 at 2 K after standard processing treatments. The performances of cavities made of low-purity ingots were affected by significant pitting of the surface after chemical etching.

  14. Superconducting radio-frequency cavities made from medium and low-purity niobium ingots

    SciTech Connect

    Ciovati, Gianluigi; Dhakal, Pashupati; Myneni, Ganapati R.

    2016-04-07

    Superconducting radio-frequency cavities made of ingot niobium with residual resistivity ratio (RRR) greater than 250 have proven to have similar or better performance than fine-grain Nb cavities of the same purity, after standard processing. The high purity requirement contributes to the high cost of the material. As superconducting accelerators operating in continuous-wave typically require cavities to operate at moderate accelerating gradients, using lower purity material could be advantageous not only to reduce cost but also to achieve higher Q0-values. In this contribution we present the results from cryogenic RF tests of 1.3–1.5 GHz single-cell cavities made of ingot Nb of medium (RRR = 100–150) and low (RRR = 60) purity from different suppliers. Cavities made of medium-purity ingots routinely achieved peak surface magnetic field values greater than 70 mT with an average Q0-value of 2 × 1010 at 2 K after standard processing treatments. As a result, the performances of cavities made of low-purity ingots were affected by significant pitting of the surface after chemical etching.

  15. Superconducting radio-frequency cavities made from medium and low-purity niobium ingots

    DOE PAGES

    Ciovati, Gianluigi; Dhakal, Pashupati; Myneni, Ganapati R.

    2016-04-07

    Superconducting radio-frequency cavities made of ingot niobium with residual resistivity ratio (RRR) greater than 250 have proven to have similar or better performance than fine-grain Nb cavities of the same purity, after standard processing. The high purity requirement contributes to the high cost of the material. As superconducting accelerators operating in continuous-wave typically require cavities to operate at moderate accelerating gradients, using lower purity material could be advantageous not only to reduce cost but also to achieve higher Q0-values. In this contribution we present the results from cryogenic RF tests of 1.3–1.5 GHz single-cell cavities made of ingot Nb ofmore » medium (RRR = 100–150) and low (RRR = 60) purity from different suppliers. Cavities made of medium-purity ingots routinely achieved peak surface magnetic field values greater than 70 mT with an average Q0-value of 2 × 1010 at 2 K after standard processing treatments. As a result, the performances of cavities made of low-purity ingots were affected by significant pitting of the surface after chemical etching.« less

  16. On the propagation and mode conversion of auroral medium frequency bursts

    NASA Astrophysics Data System (ADS)

    Broughton, M. C.; LaBelle, J.; Kim, E.-H.; Yoon, P. H.; Johnson, J. R.; Cairns, I. H.

    2016-02-01

    Auroral medium frequency (MF) bursts are broadband, impulsive radio emissions associated with local substorm onsets. MF bursts consist of a characteristic fine structure whereby the higher frequencies arrive 10-100 ms before the lower frequencies. LaBelle (2011a) proposed that MF bursts originate as Langmuir/Z mode waves on the topside of the ionosphere that mode-convert to LO mode waves and propagate to ground level, with the fine structure resulting by propagation delays due to the topside ionospheric density profile. We investigate three aspects of this mechanism. First, full-wave calculations are used to simulate the MF burst fine structure using a realistic ionospheric density profile. The delay between the highest and lowest frequencies is 21 ms. This value is smaller than the experimentally determined delays of ˜100 ms presented in Bunch and LaBelle (2009), but differences between the topside electron number density profile used in the simulations and the number density profile during disturbed conditions make comparisons only approximate. Second, the Landau damping of Langmuir/Z mode waves on the topside ionosphere is calculated, assuming the electron distribution function consists of a cold background population (ne0) and a warm secondary population (nse). The Landau damping is small when nse/ne0 = 0.04% (consistent with Maggs and Lotko (1981)) but is significant when nse/ne0 > 0.4%. Finally, full-wave calculations are used to determine the mode conversion efficiency from Langmuir/Z mode waves to LO mode waves. These imply that waves would suffer an attenuation of wave energy density of approximately 5-10% if they are generated with their wave vectors in a narrow cone centered around the local magnetic field. Taken together, these calculations suggest that for small values of nse/ne0 <0.4%, the mechanism proposed by LaBelle (2011a) is a plausible explanation for the origin of MF bursts.

  17. Socioeconomic factors are associated with frequency of repeat emergency department visits for closed pediatric fractures

    PubMed Central

    Dy, Christopher J.; Lyman, Stephen; Do, Huong T.; Fabricant, Peter D.; Marx, Robert G.; Green, Daniel W.

    2014-01-01

    Background Previous research has demonstrated both greater difficulty in obtaining follow-up appointments and increased likelihood of return visits to the emergency department (ED) for patients with government-funded insurance plans. The purpose of the current study is to determine whether socioeconomic factors, such as race and insurance type, are associated with the frequency of repeat ED visits in pediatric patients with closed fractures. Methods A review of ED visit data over a 2-year period from a statewide hospital discharge database in New York was conducted. Discharges for patients with a unique person identifier in the database age 17 and younger were examined for an ICD-9 diagnosis of closed upper or lower extremity fracture. Age, sex, race, and insurance type for patients with a return ED visit within 8 weeks for the same fracture diagnosis were compared to those without a return visit using standard univariate statistical tests and logistic regression analyses. Results Of the 68,236 visits reviewed, the revisit rate was 0.85%. Patients of non-white or unidentified race were significantly more likely to have a revisit than white patients (OR 1.27; p=0.006). Patients with government-funded insurance were significantly more likely to have a revisit than those without government-funded insurance (OR 1.55; p<0.001). Patients with private insurance were significantly less likely to have a revisit than those without private insurance (OR 0.72; p=0.001). Conclusions Our analysis revealed that non-white patients are more likely to return to the ED within 8 weeks for the same fracture diagnosis. Patients with government insurance are 55% more likely to have a revisit, while patients with private insurance are 28% less likely to have a revisit. Our results suggest that socioeconomic disparities exist in access to orthopaedic care for closed fractures in a pediatric population. Physicians and policy makers should be mindful of these health care disparities when

  18. Repeatability of frequency of corrective foot pressure during balance control in children aged between 2 and 7.

    PubMed

    Sobera, Małgorzata; Siedlecka, Bożena

    2010-01-01

    The frequency of corrective signal (the centre of corrective (COC) signal), which is the decomposition of COP (centre of pressure) and estimated COM (centre of mass) time series, is one of the indicators reflecting the quality of postural control during stance. Young children, in the period of intensive development, gradually improve the quality of postural control in a daily life. The purpose of this paper was to describe the time series of corrective centre of foot pressure repeatability in young children aged between 2 and 7 during body stability in natural stance position. 272 healthy children aged between 2 and 7 were divided into 6 age groups. Two AccuSway force platforms were used (one foot of the subject was on one platform, the second foot, on the other). The COP trajectories were the basis for the calculation of the frequency stability indices in frontal and sagittal planes for the left leg and right leg separately. The COC signals were collected by the method based on the Kuczyński viscoelastic model. In order to assess the repeatability, the concordance correlation coefficient (CCC) was used between the 1st and the 2nd trials, the 2nd and the 3rd trials, and the 1st and the 3rd trials. The maturation of postural control system goes rather slowly in two youngest groups which showed the poor repeatability in COC frequency between the 2nd and the 3rd years of life. From the 4th to the 7th year of life the inter-session repeatability rapidly increases in three consecutive trials. Poor difference of frequency concordance was found between the left and right lower limbs. It is concluded that the frequency of corrective foot pressure is the reliable indicator of postural control for children aged between 4 and 7, but not for younger ones.

  19. Simulation and Measurement of Medium-Frequency Signals Coupling From a Line to a Loop Antenna

    PubMed Central

    Damiano, Nicholas W.; Li, Jingcheng; Zhou, Chenming; Brocker, Donovan E.; Qin, Yifeng; Werner, Douglas H.; Werner, Pingjuan L.

    2016-01-01

    The underground-mining environment can affect radio-signal propagation in various ways. Understanding these effects is especially critical in evaluating communications systems used during normal mining operations and during mine emergencies. One of these types of communications systems relies on medium-frequency (MF) radio frequencies. This paper presents the simulation and measurement results of recent National Institute for Occupational Safety and Health (NIOSH) research aimed at investigating MF coupling between a transmission line (TL) and a loop antenna in an underground coal mine. Two different types of measurements were completed: 1) line-current distribution and 2) line-to-antenna coupling. Measurements were taken underground in an experimental coal mine and on a specially designed surface test area. The results of these tests are characterized by current along a TL and voltage induced in the loop from a line. This paper concludes with a discussion of issues for MF TLs. These include electromagnetic fields at the ends of the TL, connection of the ends of the TL, the effect of other conductors underground, and the proximity of coal or earth. These results could help operators by providing examples of these challenges that may be experienced underground and a method by which to measure voltage induced by a line. PMID:27784954

  20. Medium-high frequency ultrasound and ozone based advanced oxidation for amoxicillin removal in water.

    PubMed

    Kıdak, Rana; Doğan, Şifa

    2017-01-28

    In this study, treatment of an antibiotic compound amoxicillin by medium-high frequency ultrasonic irradiation and/or ozonation has been studied. Ultrasonic irradiation process was carried out in a batch reactor for aqueous amoxicillin solutions at three different frequencies (575, 861 and 1141kHz). The applied ultrasonic power was 75W and the diffused power was calculated as 14.6W/L. The highest removal was achieved at 575kHz ultrasonic frequency (>99%) with the highest pseudo first order reaction rate constant 0.04min(-1) at pH 10 but the mineralization achieved was around 10%. Presence of alkalinity and humic acid species had negative effect on the removal efficiency (50% decrease). To improve the poor outcomes, ozonation had been applied with or without ultrasound. Ozone removed the amoxicillin at a rate 50 times faster than ultrasound. Moreover, due to the synergistic effect, coupling of ozone and ultrasound gave rise to rate constant of 2.5min(-1) (625 times higher than ultrasound). In the processes where ozone was used, humic acid did not show any significant effect because the rate constant was so high that ozone has easily overcome the scavenging effects of natural water constituents. Furthermore, the intermediate compounds, after the incomplete oxidation mechanisms, has been analyzed to reveal the possible degradation pathways of amoxicillin through ultrasonic irradiation and ozonation applications. The outcomes of the intermediate compounds experiments and the toxicity was investigated to give a clear explanation about the safety of the resulting solution. The relevance of all the results concluded that hybrid advanced oxidation system was the best option for amoxicillin removal.

  1. Repeatability of Layered Corneal Pachymetry With the Artemis Very High-frequency Digital Ultrasound Arc-Scanner

    PubMed Central

    Reinstein, Dan Z.; Archer, Timothy J.; Gobbe, Marine; Silverman, Ronald H.; Coleman, D. Jackson

    2015-01-01

    Purpose To assess the three-dimensional repeatability of thickness measurements for epithelium, stroma, cornea, flap, and residual stromal bed using the Artemis very high-frequency (VHF) digital ultrasound arc-scanner (ArcScan Inc). Methods Five consecutive measurements were obtained for 10 eyes of 10 patients 1 year after LASIK using the Artemis VHF digital ultrasound arc-scanner across the central 10-mm diameter of the cornea. Repeatability analysis was performed for thickness measurements for each corneal layer—epithelium, stroma, cornea, flap, and residual stromal bed. The standard deviation of repeated measurements (point-repeatability) was calculated for each measurement location in 0.1-mm steps for the 10 × 10-mm matrix. The pooled standard deviation of the point-repeatability for each measurement location within the central 1-, 2-, and 3-mm radius was calculated (region-repeatability). The corneal thickness of the baseline scan set was compared to that of subsequent scan sets within the same session and plotted over time to assess any possible hydration effects of the immersion technique. Results The repeatability at the corneal vertex was 0.58 μm for epithelium, 1.78 μm for stroma, 1.68 μm for cornea, 1.68 μm for flap, and 2.27 μm for residual stromal bed. The region-repeatability within the central 1-mm radius was 1.01 μm for epithelium, 3.44 μm for stroma, 3.35 μm for cornea, 2.81 μm for flap, and 3.97 μm for residual stromal bed. The mean difference in corneal thickness from the baseline value was within 1.25 μm for each of the subsequent four scan sets over a 5-minute immersion period. Conclusions Layered pachymetry of the epithelium, stroma, cornea, flap, and residual stromal bed showed high repeatability with the Artemis VHF digital ultrasound arc-scanner. The high repeatability validates the use of the Artemis for in vivo layered pachymetry. PMID:19928698

  2. Repeatability of layered corneal pachymetry with the artemis very high-frequency digital ultrasound arc-scanner.

    PubMed

    Reinstein, Dan Z; Archer, Timothy J; Gobbe, Marine; Silverman, Ronald H; Coleman, D Jackson

    2010-09-01

    To assess the three-dimensional repeatability of thickness measurements for epithelium, stroma, cornea, flap, and residual stromal bed using the Artemis very high-frequency (VHF) digital ultrasound arc-scanner (ArcScan Inc). Five consecutive measurements were obtained for 10 eyes of 10 patients 1 year after LASIK using the Artemis VHF digital ultrasound arc-scanner across the central 10-mm diameter of the cornea. Repeatability analysis was performed for thickness measurements for each corneal layer-epithelium, stroma, cornea, flap, and residual stromal bed. The standard deviation of repeated measurements (point-repeatability) was calculated for each measurement location in 0.1-mm steps for the 10×10-mm matrix. The pooled standard deviation of the point-repeatability for each measurement location within the central 1-, 2-, and 3-mm radius was calculated (region-repeatability). The corneal thickness of the baseline scan set was compared to that of subsequent scan sets within the same session and plotted over time to assess any possible hydration effects of the immersion technique. The repeatability at the corneal vertex was 0.58 μm for epithelium, 1.78 μm for stroma, 1.68 μm for cornea, 1.68 μm for flap, and 2.27 μm for residual stromal bed. The region-repeatability within the central 1-mm radius was 1.01 μm for epithelium, 3.44 μm for stroma, 3.35 μm for cornea, 2.81 μm for flap, and 3.97 μm for residual stromal bed. The mean difference in corneal thickness from the baseline value was within 1.25 μm for each of the subsequent four scan sets over a 5-minute immersion period. Layered pachymetry of the epithelium, stroma, cornea, flap, and residual stromal bed showed high repeatability with the Artemis VHF digital ultrasound arc-scanner. The high repeatability validates the use of the Artemis for in vivo layered pachymetry. Copyright 2010, SLACK Incorporated.

  3. Auroral medium frequency burst radio emission associated with the 23 March 2007 THEMIS study substorm

    NASA Astrophysics Data System (ADS)

    Bunch, N. L.; Labelle, J.; Weatherwax, A. T.; Hughes, J. M.

    2008-01-01

    Auroral medium frequency (MF) burst is an impulsive auroral radio emission associated with substorm onset detected by ground-based instruments between 1.3 and 4.5 MHz. On 23 March 2007 an MF burst emission was detected by the Dartmouth radio interferometer located near Toolik Lake, Alaska. This emission temporally coincides with the onset of the 23 March 2007 Time History of Events and Macroscale Interactions during Substorms (THEMIS) study substorm. Directions of arrival computed using the Dartmouth radio interferometer for this event also coincide spatially with the location of the expanding auroral arcs to the south observed by the all-sky imager at Fort Yukon, Alaska. This observation represents the first example of a direction of arrival measurement for MF burst. It strongly supports the association of MF burst with intense auroral arcs accompanying substorm onset. The direction of arrival of the MF burst is consistent with the direction to the eastern edge of the substorm onset location determined by multiple data sets during this substorm and suggests that location of MF burst radio emissions may be an effective method of locating substorm onsets, much as radio atmospherics are used to locate lightning.

  4. Forest canopy height estimation using double-frequency repeat pass interferometry

    NASA Astrophysics Data System (ADS)

    Karamvasis, Kleanthis; Karathanassi, Vassilia

    2015-06-01

    In recent years, many efforts have been made in order to assess forest stand parameters from remote sensing data, as a mean to estimate the above-ground carbon stock of forests in the context of the Kyoto protocol. Synthetic aperture radar interferometry (InSAR) techniques have gained traction in last decade as a viable technology for vegetation parameter estimation. Many works have shown that forest canopy height, which is a critical parameter for quantifying the terrestrial carbon cycle, can be estimated with InSAR. However, research is still needed to understand further the interaction of SAR signals with forest canopy and to develop an operational method for forestry applications. This work discusses the use of repeat pass interferometry with ALOS PALSAR (L band) HH polarized and COSMO Skymed (X band) HH polarized acquisitions over the Taxiarchis forest (Chalkidiki, Greece), in order to produce accurate digital elevation models (DEMs) and estimate canopy height with interferometric processing. The effect of wavelength-dependent penetration depth into the canopy is known to be strong, and could potentially lead to forest canopy height mapping using dual-wavelength SAR interferometry at X- and L-band. The method is based on scattering phase center separation at different wavelengths. It involves the generation of a terrain elevation model underneath the forest canopy from repeat-pass L-band InSAR data as well as the generation of a canopy surface elevation model from repeat pass X-band InSAR data. The terrain model is then used to remove the terrain component from the repeat pass interferometric X-band elevation model, so as to enable the forest canopy height estimation. The canopy height results were compared to a field survey with 6.9 m root mean square error (RMSE). The effects of vegetation characteristics, SAR incidence angle and view geometry, and terrain slope on the accuracy of the results have also been studied in this work.

  5. Consistency of fundamental frequency and perturbation in repeated phonations of sustained vowels, reading, and connected speech.

    PubMed

    Fitch, J L

    1990-05-01

    The purpose of this study was to determine consistency of the acoustic measurement of fundamental frequency (f0) and f0 perturbation using the Visi-Pitch. Samples of speech including a reading passage, vowels, and spontaneous speech were recorded for 12 normal young adults (6 men and 6 women). The results indicated that test-retest reliability was highest for the reading passage. The measurements of fundamental frequency for reading and spontaneous speech were very similar, but vowel production was, on average, higher in frequency than the other contexts. Test-retest measures of perturbation using the Visi-Pitch did not have a high correlation coefficient. Perturbation measures must be interpreted cautiously because of the influence of frequency.

  6. Impact of batch, repeated-batch (with cell recycle and medium replacement) and continuous processes on the course and efficiency of aerobic thermophilic biodegradation of potato processing wastewater.

    PubMed

    Lasik, Małgorzata; Nowak, Jacek; Krzywonos, Małgorzata; Cibis, Edmund

    2010-05-01

    The aim of the study was to assess the course and efficiency of aerobic thermophilic treatment of a high-strength (COD=35gO(2)/l) effluent from potato processing. A comparative analysis was conducted of the treatment effects achieved using batch, repeated-batch (with cell recycle and medium replacement) and continuous treatment operations. The analysis consisted in (1) examining the extent of removal for the major parameters of the wastewater: COD, TOC, TN and TP (chemical oxygen demand, total organic carbon, total nitrogen and total phosphorus), and (2) determining the impact of oxygen deficit on the formation and assimilation of organic acids in the course of the three treatment operations. When use was made of the repeated-batch operation, the values of the COD and TOC removal rates were more than twice as high as those obtained with the continuous process, and more than five times as high as those obtained with the batch process.

  7. Using An Extensive Catalogue of Repeatable Strombolian Eruptions to Monitor Small Medium Changes at Mount Erebus Volcano, Antarctica

    NASA Astrophysics Data System (ADS)

    Henderson, B.; Aster, R. C.; Kyle, P.

    2005-12-01

    A recent study by Gret et al. (2005) reconfirmed earlier work demonstrating remarkable, though variable, repeatability of short-period seismic signals produced by characteristic Strombolian eruptions of Mount Erebus. The eruptions originate as impulsive explosions of large simple gas bubbles from the surface of a long-lived, actively convecting phonolitic lava lake that rapidly refills afterwards. This self-reconstructing eruptive system lends itself to highly repeatable seismic sources. Gret et al. further noted that these repeatable seismograms (extending many 10s of seconds into the coda) and associated seismic energy scattered within the low-velocity waveguide of the volcano conduit might facilitate the novel tracking of small temporal changes in seismic velocity and/or impedance contrast within the near summit magma body and more general conduit system. We expand on this suggestive work using comprehensive correlation-based similar seismogram analysis of an extensive database of over 3000 candidate Strombolian eruptions occurring between Jan 1992 and July 2005, and recorded at up to 9 different seismic stations situated around the volcano. To obviate potential complications caused by nonlinear response (e.g., clipping) at short-period instruments, we incorporate data from broadband, high-dynamic range sensors and digital telemetry installed since 2001, and take advantage of a new period of prolific eruptions, especially since early 2005, Gret, A., Snieder, R., Aster, R., Kyle, P., Monitoring rapid temporal change in a volcano with coda wave interferometry, Geop. Res. Lett., 32, L06304, doi:10.1029/2004GL021143, 2005.

  8. Frequency-dependent entrainment of neocortical slow oscillation to repeated optogenetic stimulation in the anesthetized rat.

    PubMed

    Kuki, Toshinobu; Ohshiro, Tomokazu; Ito, Shin; Ji, Zhi-Gang; Fukazawa, Yugo; Matsuzaka, Yoshiya; Yawo, Hiromu; Mushiake, Hajime

    2013-01-01

    Local field potential (LFP) slow oscillation (<1Hz) is typically observed in the cortex during sleep or while under anesthesia and reflects synchronous activation/inactivation of the cortical neuron population. The oscillation can be entrained to repeated external sensory stimuli. To better understand the neural mechanism underlying slow-oscillation generation and its entrainment to external stimuli, we delivered optical stimulation to the cortex of anesthetized rats that exogenously expressed the light-sensitive cation channel channelrhodopsin-2 (ChR2) and simultaneously monitored LFPs across cortical layers. We found that the LFPs could be effectively entrained to repeated optical stimulation at 1Hz in deep layers. A stimulus-triggered current-source density (CSD) analysis showed that the evoked oscillation had the same depth and temporal profile as the slow oscillations, indicating that both oscillations have the same neural mechanism. Optical stimulation primarily induced the transition from the cortical up to down state. These results suggest that the anesthetized rat cortex has an intrinsic mechanism that leads to oscillation near 1Hz; effective entrainment to the 1Hz stimulation reflects the resonated state of the cortex to that stimulus. Our study is the first to demonstrate optogenetic manipulation of cortical slow oscillation and provides a mechanistic explanation for slow-oscillation entrainment.

  9. Full frequency-range transient solution for compressional waves in a fluid-saturated viscoacoustic porous medium

    SciTech Connect

    Carcione, J.M.; Quiroga-Goode, G.

    1996-01-01

    An analytical transient solution is obtained for propagation of compressional waves in a homogeneous porous dissipative medium. The solution, based on a generalization of Biot`s poroelastic equations, holds for the low- and high-frequency ranges, and includes viscoelastic phenomena of a very general nature, besides the Biot relaxation mechanism. The viscodynamic operator is used to model the dynamic behavior associated with the relative motion of the fluid in the pores at all frequency ranges. Viscoelasticity is introduced through the standard linear solid which allows the modeling of a general relaxation spectrum. The solution is used to study the influence of the material properties, such as bulk moduli, porosity, viscosity, permeability and intrinsic attenuation, on the kinematic and dynamic characteristics of the two compressional waves supported by the medium. The authors also obtain snapshots of the static mode arising from the diffusive behavior of the slow wave at low frequencies.

  10. Medium- and long-term effects of repeated bicuculline-induced seizures in developing rats on local cerebral energy metabolism.

    PubMed

    Doriat, J F; Koziel, V; Humbert, A C; Daval, J L

    1998-07-27

    To assess long-term metabolic consequences of recurrent ictal events arising during development, seizures were repeatedly generated in rats at different stages of cerebral maturation. Seizures were induced by i.p. injections of bicuculline for three consecutive days, starting from postnatal day 5 (P5), when the brain is very immature, or from P15, a period at which the brain is more structurally organized. Local cerebral metabolic rates for glucose were measured in 74 structures at P15, P25 and in adults (P60), by the autoradiographic method using 2-D-[14C]deoxyglucose. Repeated seizures in P5 to P7 pups led to a reduction (16-34%) of glucose consumption at P15, mainly significant in sensory, motor and functionally non-specific areas as well as in cerebellar nuclei. Selective decreases in metabolic activity were still recorded in adults, mostly in auditory system (20%) and cerebellar nuclei (27%). Seizures generated from P15 to P17 led to an overall mortality rate of 62% (versus 22% at P5 to P7). Surviving animals exhibited reduced metabolic rates for glucose (by 7-27%) at P25, significant in 23 structures, and depicting pronounced changes in limbic, hypothalamic, sensory and white matter areas, whereas brain functional activity finally returned to basal values at P60. Therefore, while younger rats seemed to better tolerate repeated bicuculline-induced seizures than older animals, the reverse was true for long-term metabolic effects, and the more immature the brain when seizures arise, the more persistent the functional consequences.

  11. Isomaltulose production using free cells: optimisation of a culture medium containing agricultural wastes and conversion in repeated-batch processes.

    PubMed

    Kawaguti, Haroldo Y; Buzzato, Michele F; Sato, Hélia H

    2007-04-01

    The enzyme glucosyltransferase is an industrially important enzyme since it produces non-cariogenic isomaltulose (6-O-alpha-D-glucopyronosyl-1-6-D-fructofuranose) from sucrose by intramolecular transglucosylation. The experimental designs and response surface methodology (RSM) were applied for the optimisation of the nutrient concentrations in the culture medium for the production of glucosyltransferase by Erwinia sp. D12 in shaken flasks at 200 rpm and 30 degrees C. A statistical analysis of the results showed that, in the range studied, the factors had a significant effect (P < 0.05) on glucosyltransferase production and the highest enzyme activity (10.84 U/ml) was observed in culture medium containing sugar cane molasses (150 g l(-1)), corn steep liquor (20 g l(-1)), yeast extract Prodex Lac SD (15 g l(-1)) and K2HPO4 (0.5 g l(-1)) after 8 h at 30 degrees C. The production of cell biomass by the strain of Erwinia sp. D12 was carried out in a 6.6-l fermenter with a mixing rate of 200 rpm and an aeration rate of 1 vvm. Fermentation time, cellular growth, medium pH and glucosyltransferase production were observed. The greatest glucosyltransferase activity was 22.49 U/ml, obtained after 8 h of fermentation. The isomaltulose production from sucrose was performed using free Erwinia sp. D12 cells in a batch process using an orbital shaker. The influence of the parameters sucrose concentration, temperature, pH, and cell concentration on the conversion of sucrose into isomaltulose was studied. The free cells showed a high conversion rate of sucrose into isomaltulose using batch fermentation, obtaining an isomaltulose yield of 72.11% from sucrose solution 35% at 35 degrees C.

  12. [The effects of electromagnetic radiation of extremely high frequency and low intensity on the growth rate of bacteria Escherichia coli and the role of medium pH].

    PubMed

    Tadevosian, A; Kalantarian, V; Trchunian, A

    2007-01-01

    It has been shown that coherent electromagnetic irradiation (EMI) of extremely high frequency (45-53 GHz) or millimeter waves (wavelength 5.6-6.7 mm) of low intensity (flux capacity 0.06 mW/cm2) of Escherichia coli K12, grown under anaerobic conditions during the fermentation of sugar (glucose) for 30 min or 1 h, caused a decrease in their growth rate, the maximum inhibitory effect being achieved at a frequency of 51.8 or 53 GHz. This effect depended on medium pH when the maximal action was determined at pH 7.5. In addition, separate 30-min of 1-h irradiation (frequency 51.8 or 53 GHz) of doubly distilled water or some inorganic ions contained in Tris-phosphate buffer where the cells were transferred induced oppositely directed changes in further growth of these bacteria under anaerobic conditions; irradiation of water caused a decrease in the growth rate of bacteria. A significant change in pH of water (0.5-1.5 unit) was induced by a 30-irradiation at a frequency of 49, 50.3, 51.8, or 53 GHz, when the initial pH value was 6.0 or 8.0, but not 7.5. These results indicate the changes in the properties of water and its role in the effects of EMI of extremely high frequency. The marked effect of EMI on bacteria disappeared upon repeated irradiation for 1 h at a frequency of 51.8 or 53 GHz with an interval of 2 hours. This result indicates some compensatory mechanisms in bacteria.

  13. Algebraic processing technique for extracting frequency-dependent shear-wave splitting parameters in an anisotropic medium

    NASA Astrophysics Data System (ADS)

    Han, Kai-Feng; Zeng, Xin-Wu

    2011-06-01

    Based on the dual source cumulative rotation technique in the time-domain proposed by Zeng and MacBeth (1993), a new algebraic processing technique for extracting shear-wave splitting parameters from multi-component VSP data in frequency-dependent medium has been developed. By using this dual source cumulative rotation technique in the frequency-domain (DCTF), anisotropic parameters, including polarization direction of the shear-waves and timedelay between the fast and slow shear-waves, can be estimated for each frequency component in the frequency domain. It avoids the possible error which comes from using a narrow-band filter in the current commonly used method. By using synthetic seismograms, the feasibility and validity of the technique was tested and a comparison with the currently used method was also given. The results demonstrate that the shear-wave splitting parameters frequency dependence can be extracted directly from four-component seismic data using the DCTF. In the presence of larger scale fractures, substantial frequency dependence would be found in the seismic frequency range, which implies that dispersion would occur at seismic frequencies. Our study shows that shear-wave anisotropy decreases as frequency increases.

  14. Repeated measures of vocal fundamental frequency perturbation obtained using the Visi-Pitch.

    PubMed

    Dwire, A; McCauley, R

    1995-06-01

    This article reports on a study of intrasubject variability for a measure of vocal fundamental frequency perturbation in a group of young, normal speakers. Measurements of relative average perturbation (RAP) obtained using a Visi-Pitch were examined for the vowels /a/, /i/, and /u/ produced by 25 women and 24 men on two occasions, approximately 1 week apart. Important findings consisted of higher levels of RAP for women than men and greater variability of RAP over the time period studied for women than men. Conclusions include the need for additional normative data regarding the use of the Visi-Pitch for the purpose of examining jitter.

  15. Numerical Analysis of Stochastic Dynamical Systems in the Medium-Frequency Range

    DTIC Science & Technology

    2003-02-01

    frequency vibration analysis such as the statistical energy analysis (SEA), the traditional modal analysis (well-suited for high and low: frequency...that the first few structural normal modes primarily constitute the total response. In the higher frequency range, the statistical energy analysis (SEA

  16. Learning to recognize letters in the periphery: Effects of repeated exposure, letter frequency, and letter complexity

    PubMed Central

    Husk, Jesse S.; Yu, Deyue

    2017-01-01

    Patients with central vision loss must rely on their peripheral vision for reading. Unfortunately, limitations of peripheral vision, such as crowding, pose significant challenges to letter recognition. As a result, there is a need for developing effective training methods for improving crowded letter recognition in the periphery. Several studies have shown that extensive practice with letter stimuli is beneficial to peripheral letter recognition. Here, we explore stimulus-related factors that might influence the effectiveness of peripheral letter recognition training. Specifically, we examined letter exposure (number of letter occurrences), frequency of letter use in English print, and letter complexity and evaluated their contributions to the amount of improvement observed in crowded letter recognition following training. We analyzed data collected across a range of training protocols. Using linear regression, we identified the best-fitting model and observed that all three stimulus-related factors contributed to improvement in peripheral letter recognition with letter exposure being the most important factor. As an important explanatory variable, pretest accuracy was included in the model as well to avoid estimate biases and was shown to have influence on the relationship between training improvement and letter exposure. When developing training protocols for peripheral letter recognition, it may be beneficial to not only consider the overall length of training, but also to tailor the number of stimulus occurrences for each letter according to its initial performance level, frequency, and complexity. PMID:28265651

  17. Gene conversion and deletion frequencies during double-strand break repair in human cells are controlled by the distance between direct repeats.

    PubMed

    Schildkraut, Ezra; Miller, Cheryl A; Nickoloff, Jac A

    2005-01-01

    Homologous recombination (HR) repairs DNA double-strand breaks and maintains genome stability. HR between linked, direct repeats can occur by gene conversion without an associated crossover that maintains the gross repeat structure. Alternatively, direct repeat HR can occur by gene conversion with a crossover, or by single-strand annealing (SSA), both of which delete one repeat and the sequences between the repeats. Prior studies of different repeat structures in yeast and mammalian cells revealed disparate conversion:deletion ratios. Here, we show that a key factor controlling this ratio is the distance between the repeats, with conversion frequency increasing linearly with the distances from 850 to 3800 bp. Deletions are thought to arise primarily by SSA, which involves extensive end-processing to reveal complementary single-strands in each repeat. The results can be explained by a model in which strand-invasion leading to gene conversion competes more effectively with SSA as more extensive end-processing is required for SSA. We hypothesized that a transcription unit between repeats would inhibit end-processing and SSA, thereby increasing the fraction of conversions. However, conversion frequencies were identical for direct repeats separated by 3800 bp of transcriptionally silent or active DNA, indicating that end-processing and SSA are not affected by transcription.

  18. Terahertz frequency upconversion via relativistic Doppler reflection from a photoinduced plasma front in a solid-state medium

    NASA Astrophysics Data System (ADS)

    Thomson, Mark D.; Tzanova, Slava M.; Roskos, Hartmut G.

    2013-02-01

    We propose and simulate the relativistic Doppler reflection of terahertz (THz) radiation normally incident on a plasma front in a semiconductor medium, resulting in a significant frequency upshift for the reflected radiation. The plasma front is generated by linear interband excitation of the semiconductor by a counterpropagating femtosecond optical pulse. High-resistivity silicon is identified as an ideal medium for experiments, as it possesses a desirable optical penetration depth, upshift factor, and low THz absorption and dispersion. The depletion of the optical pump pulse results in a spatiotemporal plasma profile, which leads to results that go beyond the existing analytic theory. We employ one-dimensional finite-difference time-domain simulations to predict the reflected THz pulses vs a range of realistic experimental parameters. The results indicate that a significant frequency upshift can be expected for both conventional and ultrabroadband THz pulses, and that this technique may be suitable to provide higher-bandwidth THz radiation extending into the midinfrared.

  19. Magnification of subwavelength field distributions at microwave frequencies using a wire medium slab operating in the canalization regime

    NASA Astrophysics Data System (ADS)

    Ikonen, Pekka; Simovski, Constantin; Tretyakov, Sergei; Belov, Pavel; Hao, Yang

    2007-09-01

    Authors demonstrate numerically the magnification of subwavelength field pattern using a wire medium slab operating in the canalization regime. The magnifying slab is implemented by radially enlarging the distance between adjacent wires, and the operational frequency is tuned to coincide with the Fabry-Pérot resonance condition. The near-field pattern of a complex-shaped source is canalized over an electrical distance corresponding roughly to three wavelengths (3λ), and the pattern details are magnified by a factor of 3. The performance is also studied at several frequencies deviating from the one of the Fabry-Pérot resonance.

  20. Instantaneous Real-Time Kinematic Decimeter-Level Positioning with BeiDou Triple-Frequency Signals over Medium Baselines

    PubMed Central

    He, Xiyang; Zhang, Xiaohong; Tang, Long; Liu, Wanke

    2015-01-01

    Many applications, such as marine navigation, land vehicles location, etc., require real time precise positioning under medium or long baseline conditions. In this contribution, we develop a model of real-time kinematic decimeter-level positioning with BeiDou Navigation Satellite System (BDS) triple-frequency signals over medium distances. The ambiguities of two extra-wide-lane (EWL) combinations are fixed first, and then a wide lane (WL) combination is reformed based on the two EWL combinations for positioning. Theoretical analysis and empirical analysis is given of the ambiguity fixing rate and the positioning accuracy of the presented method. The results indicate that the ambiguity fixing rate can be up to more than 98% when using BDS medium baseline observations, which is much higher than that of dual-frequency Hatch-Melbourne-Wübbena (HMW) method. As for positioning accuracy, decimeter level accuracy can be achieved with this method, which is comparable to that of carrier-smoothed code differential positioning method. Signal interruption simulation experiment indicates that the proposed method can realize fast high-precision positioning whereas the carrier-smoothed code differential positioning method needs several hundreds of seconds for obtaining high precision results. We can conclude that a relatively high accuracy and high fixing rate can be achieved for triple-frequency WL method with single-epoch observations, displaying significant advantage comparing to traditional carrier-smoothed code differential positioning method. PMID:26703614

  1. Repeated exposure to high-frequency spanking and child externalizing behavior across the first decade: A moderating role for cumulative risk

    PubMed Central

    MacKenzie, Michael J.; Nicklas, Eric; Brooks-Gunn, Jeanne; Waldfogel, Jane

    2016-01-01

    This study used the Fragile Families and Child Well-being study to examine the effects of repeated exposure to harsh parenting on child externalizing behavior across the first decade of life, and a moderating role for cumulative ecological risk. Maternal report of harsh parenting, defined as high frequency spanking, was assessed at age 1, 3, 5, and 9, along with child externalizing at age 9 (N=2768). Controlling for gender, race, maternal nativity, and city of residence, we found a cumulative risk index to significantly moderate the effects of repeated harsh parenting on child behavior, with the effects of repeated high-frequency spanking being amplified for those experiencing greater levels of cumulative risk. Harsh parenting, in the form of high frequency spanking, remains a too common experience for children, and results demonstrate that the effects of repeated exposure to harsh parenting across the first decade are amplified for those children already facing the most burden. PMID:25465318

  2. Repeated exposure to high-frequency spanking and child externalizing behavior across the first decade: a moderating role for cumulative risk.

    PubMed

    MacKenzie, Michael J; Nicklas, Eric; Brooks-Gunn, Jeanne; Waldfogel, Jane

    2014-12-01

    This study used the Fragile Families and Child Well-Being Study to examine the effects of repeated exposure to harsh parenting on child externalizing behavior across the first decade of life, and a moderating role for cumulative ecological risk. Maternal report of harsh parenting, defined as high frequency spanking, was assessed at age 1, 3, 5, and 9, along with child externalizing at age 9 (N=2,768). Controlling for gender, race, maternal nativity, and city of residence, we found a cumulative risk index to significantly moderate the effects of repeated harsh parenting on child behavior, with the effects of repeated high-frequency spanking being amplified for those experiencing greater levels of cumulative risk. Harsh parenting, in the form of high frequency spanking, remains a too common experience for children, and results demonstrate that the effects of repeated exposure to harsh parenting across the first decade are amplified for those children already facing the most burden.

  3. High-frequency and hot-platen curing of medium-density fiberboards

    Treesearch

    Robert R. Stevens; George E. Woodson

    1977-01-01

    The effects of two curing methods-high-frequencey heating and hot-platen heating-on the properties of a ureaformaldehyde-bonded medium-density fiberboard prepared with a southern-hardwoods furnish (50% southern read oak, 25% mockernut hickory, and 25% sweetgum) were studied. Boards of three densities-38, 44, and 50 lb./ft3-were cured by the two...

  4. Reported frequency of physical activity in a large epidemiological study: relationship to specific activities and repeatability over time

    PubMed Central

    2011-01-01

    Background How overall physical activity relates to specific activities and how reported activity changes over time may influence interpretation of observed associations between physical activity and health. We examine the relationships between various physical activities self-reported at different times in a large cohort study of middle-aged UK women. Methods At recruitment, Million Women Study participants completed a baseline questionnaire including questions on frequency of strenuous and of any physical activity. About 3 years later 589,896 women also completed a follow-up questionnaire reporting the hours they spent on a range of specific activities. Time spent on each activity was used to estimate the associated excess metabolic equivalent hours (MET-hours) and this value was compared across categories of physical activity reported at recruitment. Additionally, 18,655 women completed the baseline questionnaire twice, at intervals of up to 4 years; repeatability over time was assessed using the weighted kappa coefficient (κweighted) and absolute percentage agreement. Results The average number of hours per week women reported doing specific activities was 14.0 for housework, 4.5 for walking, 3.0 for gardening, 0.2 for cycling, and 1.4 for all strenuous activity. Time spent and the estimated excess MET-hours associated with each activity increased with increasing frequency of any or strenuous physical activity reported at baseline (tests for trend, P < 0.003), although the associations for housework were by far the weakest (Spearman correlations, 0.01 and -0.03 respectively for housework, and 0.11-0.37 for all other activities). Repeatability of responses to physical activity questions on the baseline questionnaire declined significantly over time. For strenuous activity, absolute agreement was 64% (κweighted = 0.71) for questionnaires administered less than 6 months apart, and 52% (κweighted = 0.51) for questionnaires more than 2 years apart. Corresponding

  5. Rogue wave triggered at a critical frequency of a nonlinear resonant medium

    NASA Astrophysics Data System (ADS)

    He, Jingsong; Xu, Shuwei; Porsezian, K.; Cheng, Yi; Dinda, P. Tchofo

    2016-06-01

    We consider a two-level atomic system interacting with an electromagnetic field controlled in amplitude and frequency by a high intensity laser. We show that the amplitude of the induced electric field admits an envelope profile corresponding to a breather soliton. We demonstrate that this soliton can propagate with any frequency shift with respect to that of the control laser, except a critical frequency, at which the system undergoes a structural discontinuity that transforms the breather in a rogue wave. A mechanism of generation of rogue waves by means of an intense laser field is thus revealed.

  6. Rogue wave triggered at a critical frequency of a nonlinear resonant medium.

    PubMed

    He, Jingsong; Xu, Shuwei; Porsezian, K; Cheng, Yi; Dinda, P Tchofo

    2016-06-01

    We consider a two-level atomic system interacting with an electromagnetic field controlled in amplitude and frequency by a high intensity laser. We show that the amplitude of the induced electric field admits an envelope profile corresponding to a breather soliton. We demonstrate that this soliton can propagate with any frequency shift with respect to that of the control laser, except a critical frequency, at which the system undergoes a structural discontinuity that transforms the breather in a rogue wave. A mechanism of generation of rogue waves by means of an intense laser field is thus revealed.

  7. Medium-frequency impulsive-thrust-activated liquid hydrogen reorientation with Geyser

    NASA Technical Reports Server (NTRS)

    Hung, R. J.; Shyu, K. L.

    1992-01-01

    Efficient technique are studied for accomplishing propellant resettling through the minimization of propellant usage through impulsive thrust. A comparison between the use of constant-thrust and impulsive-thrust accelerations for the activation of propellant resettlement shows that impulsive thrust is superior to constant thrust for liquid reorientation in a reduced-gravity environment. This study shows that when impulsive thrust with 0.1-1.0-, and 10-Hz frequencies for liquid-fill levels in the range between 30-80 percent is considered, the selection of 1.0-Hz-frequency impulsive thrust over the other frequency ranges of impulsive thrust is the optimum. Characteristics of the slosh waves excited during the course of 1.0-Hz-frequency impulsive-thrust liquid reorientation were also analyzed.

  8. The Cathode Oscillograph for the Study of Low, Medium, and High Frequencies

    NASA Technical Reports Server (NTRS)

    Dufour, A

    1924-01-01

    The object of this work has been to construct an apparatus for obtaining oscillogram of voltages and currents which are variable with respect to time and of the frequency which is constantly met in radio.

  9. Cardiac baroreflex gain is frequency dependent: insights from repeated sit-to-stand maneuvers and the modified Oxford method.

    PubMed

    Horsman, Helen M; Peebles, Karen C; Galletly, Duncan C; Tzeng, Yu-Chieh

    2013-07-01

    Cardiac baroreflex gain is usually quantified as the reflex alteration in heart rate during changes in blood pressure without considering the effect of the rate of change in blood pressure on the estimated gain. This study sought to (i) characterize baroreflex gain as a function of blood pressure oscillation frequencies using a repeat sit-to-stand method and (ii) compare baroreflex gain values obtained using the sit-to-stand method against the modified Oxford method. Fifteen healthy individuals underwent the repeated sit-to-stand method in which blood pressure oscillations were driven at 0.03, 0.05, 0.07, and 0.1 Hz. Sixteen healthy participants underwent the sit-to-stand and modified Oxford methods to examine their agreement. Sit-to-stand baroreflex gain was highest at 0.05 Hz (8.8 ± 3.2 ms·mm Hg(-1)) and lowest at 0.1 Hz (5.8 ± 3.0 ms·mm Hg(-1)). Baroreflex gains at 0.03 Hz (7.7 ± 3.0 ms·mm Hg(-1)) and 0.07 Hz (7.5 ± 3.3 ms·mm Hg(-1)) were not different from the baroreflex gain at 0.05 Hz. There was moderate correlation between phenylephrine gain and sit-to-stand gain (r values ranged from 0.52 to 0.75; all frequencies, p < 0.05), but no correlation between sodium nitroprusside gain and sit-to-stand gain (r values ranged from -0.07 to 0.22; all p < 0.05). Bland-Altman analysis of phenylephrine gain and sit-to-stand gain showed poor agreement and a positive proportional bias. These results show that baroreflex gains derived from these 2 methods cannot be used interchangeably. Furthermore, cardiac baroreflex gain is frequency dependent between 0.03 Hz and 0.1 Hz, which challenges the conventional practice of summarizing baroreflex gain as a single number.

  10. Near-field effects in radio-frequency emission from particle showers in a dense medium

    NASA Astrophysics Data System (ADS)

    Hyneman, Rachel; Wissel, Stephanie; Belov, Konstantin; Vahle, Patricia; Salzberg, David; Romero-Wolf, Andres; SLAC T-510 Collaboration

    2015-04-01

    Two mechanisms are expected to produce radio-frequency emission in ultra-high energy cosmic ray air showers. Askaryan emission, generated by an overall charge excess, has been studied in beam experiments previously. The emission due to Earth's magnetic field has been inferred from observations by cosmic-ray observatories, but not yet studied in a controlled laboratory environment. The SLAC T-510 experiment recently studied the effects of a magnetic field upon the radio-frequency emission from particle showers in high-density polyethylene as a way to model cosmic ray air showers. Ultra-High Frequency (UHF) and Very High Frequency (VHF) antennas were used to measure the signal from particle showers in the target at different positions. For an overview, see the talk by K. Mulrey in this conference. Several near-field runs were performed with the UHF antenna array closer to the target than in the majority of the data taking. Signal from the two mechanisms, Askaryan and Magnetic, were separated into orthogonal polarizations by the geometry of the system. We report on studies of the electric field for several positions in the near field. Initial results indicate that the electric field as a function of angle behaves consistently as the antennas are moved further from the target.

  11. CT screening for lung cancer: Frequency of enlarged adrenal glands identified in baseline and annual repeat rounds.

    PubMed

    Hu, Minxia; Yip, Rowena; Yankelevitz, David Y; Henschke, Claudia I

    2016-12-01

    To determine the frequency of adrenal enlargement of participants in a CT-screening program for lung cancer and demonstrate the progression during follow-up, separately for baseline and annual repeat rounds. HIPAA-compliant informed consent was obtained in 4,776 participants. The adrenal gland was defined as enlarged if it measured ≥6 mm at its largest diameter. Logistic regression analyses were performed. At baseline, 202 (4 %) of 4,776 participants had adrenal enlargement. Significant factors were age (OR = 1.4, 95 % CI: 1.2-1.7) and current smoker (OR = 1.8, 95 % CI: 1.3-2.4). Follow-up 7-18 months after baseline for 133 cases with adrenal enlargement <40 mm showed it decreased or was stable in 85 (64 %), and increased by <10 mm in 48 (36 %). Five (0.04 %) cases of adrenal enlargement were newly identified, none increased beyond 40 mm on follow-up. Adrenal enlargement was a significant predictor of a subsequent diagnosis of lung cancer (OR = 2.0, 95 % CI: 1.2-3.4). Participants with adrenal enlargement <40 mm identified at baseline and on repeat screening could be reasonably assessed on subsequent annual screening. Adrenal enlargement increased with increasing pack-years of smoking. Adrenal enlargement was an independent predictor of a subsequent diagnosis of lung cancer. • Adrenal enlargement was seen in 4 % of participants at baseline screening. • Age and currently smoking were significantly associated with adrenal enlargement. • 0.04 % of participants were newly identified with adrenal enlargement. • Annual follow-up for adrenal enlargement <40 mm was appropriate. • Adrenal enlargement was an independent predictor of a diagnosis of lung cancer.

  12. Direction of Arrival Studies of Medium Frequency Burst Radio Emissions at Toolik Lake, AK

    NASA Astrophysics Data System (ADS)

    Bunch, N.; Labelle, J.; Weatherwax, A.; Lummerzheim, D.; Stenbaek-Nielsen, H.

    2008-05-01

    MF burst is an impulsive radio emission of auroral origin, which can be detected by ground-based instruments at frequencies between 1,300 and 4,500kHz. MF burst has been shown to be associated with substorm onset, but its exact generation mechanism remains unknown, although it is thought to arise from mode conversion radiation [see review by LaBelle and Treumann, 2002] . In search of the generation mechanism of this emission, Dartmouth College has deployed radio interferometers in Alaska, Northern Canada, Greenland, and Antarctica, including a three-element interferometer deployed to Toolik Field Station in Alaska during the summer of 2006. This instrument measured spectra, amplitudes and directions of arrival (DOA's) of over 47 MF burst events between November 30, 2006 and May 26, 2007. These data represent the first DOA measurements of impulsive MF burst, of which selected case studies were presented at the Fall 2007 AGU conference. Here we present a statistical survey of all 47 events as well as detailed analysis of three events occurring on: Mar 5, Mar 23, and Nov 20, 2007. For the statistical survey, we present distributions of DOA as a function of local time and frequency. In each case study we analyze the direction of arrival of the emissions as a function of both time and frequency within each event. The time variations will be compared with the time variations of optical auroral forms simultaneously measured with all-sky cameras. The dependence of the arrival direction on frequency enables a significant test of the generation mechanism whereby the waves are emitted at the local plasma or upper hybrid frequency in the topside ionosphere, predicting that higher frequencies should originate at lower altitudes. These three events have been selected because All-Sky camera data are available at these times from Toolik Lake and Fort Yukon, Alaska. These are critical both for identifying which optical features are associated with the radio emissions as well as for

  13. Nonlinear Stress/Strain Behavior of a Synthetic Porous Medium at Seismic Frequencies

    NASA Astrophysics Data System (ADS)

    Roberts, P. M.; Ibrahim, R. H.

    2008-12-01

    Laboratory experiments on porous core samples have shown that seismic-band (100 Hz or less) mechanical, axial stress/strain cycling of the porous matrix can influence the transport behavior of fluids and suspended particles during steady-state fluid flow through the cores. In conjunction with these stimulated transport experiments, measurements of the applied dynamic axial stress/strain were made to investigate the nonlinear mechanical response of porous media for a poorly explored range of frequencies from 1 to 40 Hz. A unique core-holder apparatus that applies low-frequency mechanical stress/strain to 2.54-cm-diameter porous samples during constant-rate fluid flow was used for these experiments. Applied stress was measured with a load cell in series with the source and porous sample, and the resulting strain was measured with an LVDT attached to the core face. A synthetic porous system consisting of packed 1-mm-diameter glass beads was used to investigate both stress/strain and stimulated mass-transport behavior under idealized conditions. The bead pack was placed in a rubber sleeve and static confining stresses of 2.4 MPa radial and 1.7 MPa axial were applied to the sample. Sinusoidal stress oscillations were applied to the sample at 1 to 40 Hz over a range of RMS stress amplitude from 37 to 275 kPa. Dynamic stress/strain was measured before and after the core was saturated with deionized water. The slope of the linear portion of each stress/strain hysteresis loop was used to estimate Young's modulus as a function of frequency and amplitude for both the dry and wet sample. The modulus was observed to increase after the dry sample was saturated. For both dry and wet cases, the modulus decreased with increasing dynamic RMS stress amplitude at a constant frequency of 23 Hz. At constant RMS stress amplitude, the modulus increased with increasing frequency for the wet sample but remained constant for the dry sample. The observed nonlinear behavior of Young's modulus

  14. NONLINEAR-OPTICS PHENOMENA: Formation of optical pulses by modulating the resonant quantum transition frequency in a spectrally inhomogeneous medium

    NASA Astrophysics Data System (ADS)

    Polovinkin, V. A.; Radionychev, E. V.

    2010-02-01

    We consider the conversion of monochromatic radiation in the case of resonant interaction with a quantum system under the condition of harmonic modulation of the quantum transition frequency by the action of additional nonresonant radiation due to the Stark or Zeeman effect, taking into account the inhomogeneous broadening of the quantum transition line. It is shown analytically and numerically that resonant radiation can be converted in a train of ultrashort pulses with a peak intensity exceeding manifold the incident wave intensity. The possibility of the additional compression of the produced pulses is studied by compensating the inherent frequency modulation in a medium with a quadratic or programmable dispersion. The optimal values of the radiation — matter interaction parameters are found numerically. It is shown that generation of femtosecond optical pulses of radiation quasi-resonant to the δ transition of the atomic hydrogen Balmer series is possible.

  15. Comparison of medium frequency pulsed radar interferometer and correlation analysis winds, part 1

    NASA Technical Reports Server (NTRS)

    Meek, C. E.; Reid, I. M.; Manson, A. H.

    1986-01-01

    In principle, the interferometer analysis determines the radial velocity and direction of single scatterers provided that each has a sufficiently different Doppler frequency to permit separation by spectral analysis. In fact, scatterers will not have constant radial velocity, and their Doppler frequencies as well as their directions will be modulated by their horizontal motion. Thus, there is a tradeoff between the poorer resolution but less smeared scatterers on shorter records and the higher resolution (longer) records. Three or more non-collinear scatterers are sufficient to determine the wind. It appears that the velocity found from the combined interferometer peaks agrees well with the apparent velocity from correlation methods, but the true velocity is a factor of 2 smaller. This difference might be resolved by searching for scatters showing regular movement between adjacent records.

  16. Relative Slowness Estimates for Locations of Repeating Low-Frequency Earthquakes and Narrow-Band Tremor at Fuego Volcano, Guatemala

    NASA Astrophysics Data System (ADS)

    Waite, G. P.; Lyons, J. J.

    2009-12-01

    Fuego volcano, Guatemala, is an open-vent basaltic stratovolcano characterized by nearly constant, but low-level eruptive activity since 1999. In January 2008, we deployed small antennas of six broadband seismic and five acoustic sensors 0.9 km north of the active vent to investigate the source of explosions and low-frequency seismicity. The seismic array had stations spaced 30 m apart and a total aperture of ~140 m. The infrasound sensors were deployed in a similar array, but with average station spacing of 50 m. There was no lava effusion during the deployment, but explosions were recorded approximately once per hour, with varied amounts of ash, and with durations from 20-150 s. In addition to the explosions, our seismic array recorded narrow band tremor with dominant frequencies of 1.6 and 1.9 Hz and discrete events that were not generally detected by the acoustic array. The dominant class of these events, which repeated approximately 10-15 times per hour, had an impulsive onset with first motion toward the vent, a short duration of <5 s, and dominant frequencies from 1-3 Hz. Their similarity suggests a nondestructive source process. While waveforms are similar from event to event when viewed on the same channel, the large variation in waveforms across the array yields a large uncertainty in slowness parameter estimates. We take advantage of the high degree of similarity between events to determine relative slowness estimates. After determining the best-fit slowness parameters for a master event, we measured the relative slowness parameters for 203 similar events. The results indicate a stationary source, although subtle variations in waveforms suggest that the source mechanism or source location varied slightly with time. The low-frequency events were located by computing slowness parameters from synthetic waveforms for a volume of sources beneath the summit region. The source is ~150 m directly beneath the active vent, but not associated with explosions. Full

  17. Ultra-thin Low-Frequency Broadband Microwave Absorber Based on Magnetic Medium and Metamaterial

    NASA Astrophysics Data System (ADS)

    Cheng, Yongzhi; He, Bo; Zhao, Jingcheng; Gong, Rongzhou

    2017-02-01

    An ultra-thin low-frequency broadband microwave absorber (MWA) based on a magnetic rubber plate (MRP) and cross-shaped structure (CSS) metamaterial (MM) was presented numerically and experimentally. The designed composite MWA is consisted of the MRP, CSS resonator, dielectric substrate and metallic background plane. The low-frequency absorption can be easily adjusted by tuning the geometric parameter of the CSS MM and the thickness of MPR. A bandwidth (i.e. the reflectance is below -10 dB) from 2.5 GHz to 5 GHz can be achieved with the total thickness of about 2 mm in experiments. The broadband absorption is attributed to the overlap of two resonant absorption peaks originated from MRP and CSS MM, respectively. More importantly, the thickness of the composite WMA is much thinner ( λ/40; λ is the operation center frequency), which could operate well at wide incidence angles for both transverse electric and transverse magnetic waves. Thus, it can be expected that our design will be applicable in the area of eliminating microwave energy and electromagnetic stealth.

  18. Antioxidant responses in estuarine invertebrates exposed to repeated oil spills: Effects of frequency and dosage in a field manipulative experiment.

    PubMed

    Sandrini-Neto, Leonardo; Pereira, Letícia; Martins, César C; Silva de Assis, Helena C; Camus, Lionel; Lana, Paulo C

    2016-08-01

    We have experimentally investigated the effects of repeated diesel spills on the bivalve Anomalocardia brasiliana, the gastropod Neritina virginea and the polychaete Laeonereis culveri, by monitoring the responses of oxidative stress biomarkers in a subtropical estuary. Three frequencies of exposure events were compared against two dosages of oil in a factorial experiment with asymmetrical controls. Hypotheses were tested to distinguish between (i) the overall effect of oil spills, (ii) the effect of diesel dosage via different exposure regimes, and (iii) the effect of time since last spill. Antioxidant defense responses and oxidative damage in the bivalve A. brasiliana and the polychaete L. culveri were overall significantly affected by frequent oil spills compared to undisturbed controls. The main effects of diesel spills on both species were the induction of SOD and GST activities, a significant increase in LPO levels and a decrease in GSH concentration. N. virginea was particularly tolerant to oil exposure, with the exception of a significant GSH depletion. Overall, enzymatic activities and oxidative damage in A. brasiliana and L. culveri were induced by frequent low-dosage spills compared to infrequent high-dosage spills, although the opposite pattern was observed for N. virginea antioxidant responses. Antioxidant responses in A. brasiliana and L. culveri were not affected by timing of exposure events. However, our results revealed that N. virginea might have a delayed response to acute high-dosage exposure. Experimental in situ simulations of oil exposure events with varying frequencies and intensities provide a useful tool for detecting and quantifying environmental impacts. In general, antioxidant biomarkers were induced by frequent low-dosage exposures compared to infrequent high-dosage ones. The bivalve A. brasiliana and the polychaete L. culveri are more suitable sentinels due to their greater responsiveness to oil and also to their wider geographical

  19. Non-repeatable science: assessing the frequency of voucher specimen deposition reveals that most arthropod research cannot be verified

    PubMed Central

    2015-01-01

    Scientific findings need to be verifiable and grounded in repeatability. With specimen-level research this is in part achieved with the deposition of voucher specimens. These are labeled, curated, data-based specimens that have been deposited in a collection or museum, available for verification of the work and to ensure researchers are calling the same taxa by the same names. Voucher specimens themselves are the subject of research, from the discovery of new species by taxonomists to ecologists documenting historical records of invasive species. Our objective was to quantify the frequency of voucher specimen deposition in biodiversity and community ecology research through a survey of the peer-reviewed literature about arthropods, from 1989 until 2014. Overall rates of voucher deposition were alarmingly low, at under 25%. This rate increased significantly over time, with 35% of papers reporting on vouchers in 2014. Relative to the global mean, entomological research had a significantly higher rate of voucher deposition (46%), whereas researchers studying crustaceans deposited vouchers less than 6% of the time, significantly less than the mean. Researchers working in museums had a significantly higher frequency of voucher deposition. Our results suggest a significant culture shift about the process of vouchering specimens is required. There must be more education and mentoring about voucher specimens within laboratories and across different fields of study. Principal investigators and granting agencies need a proactive approach to ensuring specimen-level data are properly, long-term curated. Editorial boards and journals can also adopt policies to ensure papers are published only if explicit statements about the deposition of voucher specimens is provided. Although the gap is significant, achieving a higher rate of voucher specimen deposition is a worthy goal to ensure all research efforts are preserved for future generations. PMID:26339546

  20. [Research on Time-frequency Characteristics of Magneto-acoustic Signal of Different Thickness Medium Based on Wave Summing Method].

    PubMed

    Zhang, Shunqi; Yin, Tao; Ma, Ren; Liu, Zhipeng

    2015-08-01

    Functional imaging method of biological electrical characteristics based on magneto-acoustic effect gives valuable information of tissue in early tumor diagnosis, therein time and frequency characteristics analysis of magneto-acoustic signal is important in image reconstruction. This paper proposes wave summing method based on Green function solution for acoustic source of magneto-acoustic effect. Simulations and analysis under quasi 1D transmission condition are carried out to time and frequency characteristics of magneto-acoustic signal of models with different thickness. Simulation results of magneto-acoustic signal were verified through experiments. Results of the simulation with different thickness showed that time-frequency characteristics of magneto-acoustic signal reflected thickness of sample. Thin sample, which is less than one wavelength of pulse, and thick sample, which is larger than one wavelength, showed different summed waveform and frequency characteristics, due to difference of summing thickness. Experimental results verified theoretical analysis and simulation results. This research has laid a foundation for acoustic source and conductivity reconstruction to the medium with different thickness in magneto-acoustic imaging.

  1. Repeatability and interobserver reproducibility of Artemis-2 high-frequency ultrasound in determination of human corneal thickness.

    PubMed

    Ogbuehi, Kelechi C; Osuagwu, Uchechukwu L

    2012-01-01

    The purpose of this study was to assess the repeatability and limits of agreement of corneal thickness values measured by a high-frequency ultrasound (Artemis-2), hand-held ultrasound pachymeter (DGH-500) and a specular microscope (SP-3000P). Central corneal thickness (CCT) was analyzed in this prospective randomized study that included 32 patients (18 men and 14 women) aged 21-24 years. Measurements were obtained in two sessions, one week apart, by two examiners with three devices in a randomized order. Nine measurements were taken (three with each device) on one randomly selected eye of each patient in each measurement session. The coefficient of repeatability and interobserver reproducibility for the values of each method were calculated. The limits of agreement between techniques were also evaluated. There were no significant differences in CCT values between sessions for each of the three devices (P > 0.05). The repeatability coefficients for the Artemis-2 (±8 μm/±9 μm) were superior to those of the SP-3000P (±9 μm/±11 μm) and DGH 500 (±12 μm/±12 μm) in session 1/session 2 respectively, while the interobserver reproducibility index (differences between session 1 and session 2) was superior for the SP-3000P (±17 μm) with respect to DHG-500 (±29 μm) and the Artemis-2 (±31 μm). In session 1 and session 2, the limits of agreement between the techniques were 35 μm to -31 μm and 34 to -20 μm, respectively, for DGH-500 versus Artemis-2, 73 μm to 3 μm and 60 μm to 9 μm for Artemis-2 versus SP-3000P, and 58 μm to 22 μm and 72 μm to 10 μm for DGH-500 versus SP-3000P comparisons. The DGH-500 and Artemis-2 gave similar values (P > 0.05) in both sessions, but both (Artemis-2 and DGH-500) values were significantly greater than that of the SP-3000P (P < 0.05) in both sessions. Repeatability was comparably good for the three techniques. However, interobserver reproducibility was approximately twice as good with the SP-3000P compared with the other

  2. Repeatability and interobserver reproducibility of Artemis-2 high-frequency ultrasound in determination of human corneal thickness

    PubMed Central

    Ogbuehi, Kelechi C; Osuagwu, Uchechukwu L

    2012-01-01

    Background The purpose of this study was to assess the repeatability and limits of agreement of corneal thickness values measured by a high-frequency ultrasound (Artemis-2), hand-held ultrasound pachymeter (DGH-500) and a specular microscope (SP-3000P). Methods Central corneal thickness (CCT) was analyzed in this prospective randomized study that included 32 patients (18 men and 14 women) aged 21–24 years. Measurements were obtained in two sessions, one week apart, by two examiners with three devices in a randomized order. Nine measurements were taken (three with each device) on one randomly selected eye of each patient in each measurement session. The coefficient of repeatability and interobserver reproducibility for the values of each method were calculated. The limits of agreement between techniques were also evaluated. Results There were no significant differences in CCT values between sessions for each of the three devices (P > 0.05). The repeatability coefficients for the Artemis-2 (±8 μm/±9 μm) were superior to those of the SP-3000P (±9 μm/±11 μm) and DGH 500 (±12 μm/±12 μm) in session 1/session 2 respectively, while the interobserver reproducibility index (differences between session 1 and session 2) was superior for the SP-3000P (±17 μm) with respect to DHG-500 (±29 μm) and the Artemis-2 (±31 μm). In session 1 and session 2, the limits of agreement between the techniques were 35 μm to −31 μm and 34 to −20 μm, respectively, for DGH-500 versus Artemis-2, 73 μm to 3 μm and 60 μm to 9 μm for Artemis-2 versus SP-3000P, and 58 μm to 22 μm and 72 μm to 10 μm for DGH-500 versus SP-3000P comparisons. The DGH-500 and Artemis-2 gave similar values (P > 0.05) in both sessions, but both (Artemis-2 and DGH-500) values were significantly greater than that of the SP-3000P (P < 0.05) in both sessions. Conclusion Repeatability was comparably good for the three techniques. However, interobserver reproducibility was approximately twice as

  3. Medium-frequency impulsive-thrust-excited slosh waves during propellant reorientation with a geyser

    NASA Technical Reports Server (NTRS)

    Hung, R. J.; Shyu, K. L.; Lee, C. C.

    1992-01-01

    Slosh wave excitation induced by a resettling flowfield activated by 1.0-Hz impulsive thrust during the course of liquid reorientation with the initiation of geyser for liquid-fill levels of 30, 50, 65, 70, and 80 percent has been studied. Characteristics of slosh waves of various frequencies excited by the resettling flowfield are discussed. Slosh wave excitations shift the fluid mass distribution in the container which imposes time-dependent variations in spacecraft moment of inertia. This information is important for spacecraft control during the course of liquid reorientation.

  4. Detection of Traveling Ionospheric Disturbances by Medium Frequency Doppler Sounding Using AM Radio Transmissions

    NASA Astrophysics Data System (ADS)

    Chilcote, M. A.; Labelle, J. W.; Lind, F. D.; Coster, A. J.; Galkin, I. A.; Miller, E.; Weatherwax, A. T.

    2013-12-01

    Nighttime traveling ionosphere disturbances (TIDs) propagating in the lower F region of the ionosphere were detected from time variations in the Doppler shifts of commercial AM radio broadcast stations. Three separately deployed receivers, components of the Intercepted Signals for Ionospheric Science (ISIS) Array software radio instrumentation network, recorded signals from two radio stations during eleven nights in March-April, 2012. Combining these measurements established that variations in the frequencies of the received signals, with amplitudes up to a few tenths of a Hertz, resulted from Doppler shifts produced by the ionosphere. At times, TIDs were detected as large amplitude variations in the Doppler shift with approximately 40-minute period correlated across the array. For one study interval, 0000-0400 UT on April 13, 2012, simultaneous GPS-TEC, digisonde, and superDARN coherent backscatter radar measurements confirmed the detection of TIDs with the same period. Detection of the AM signals at widely spaced receivers allowed the phase velocity and wavelength of the TIDs to be inferred, with some limitations due to differing reflection heights for the different frequencies. These measurements will be compared to phase velocities and wavelengths determined from combining an array of GPS receivers; discrepancies due to the altitude sensitivity of the techniques or other effects will be discussed. These results demonstrate that AM radio signals can be used for detection of nighttime TIDs.

  5. Study on an effective algorithm of acquiring and tracking BD2 medium-frequency signals

    NASA Astrophysics Data System (ADS)

    Liu, Yanfei; Yang, Yu; Jiang, Shiqiang; Jiang, Ke; Wang, Jieling

    2017-08-01

    According to the modulation characteristics of NH code in MEO/IGSO satellites, a simple and effective serial-parallel combined method of capturing the BD2 satellite signals was presented and a complete software receiver of the B1 frequency point was realized. Based on Kalman filter, a new kind of vector tracking loop structure of pseudo code and carrier wave to adapt to the high dynamic situation was put forward, and the half-vector deeply-coupled structure based on CKF pre-filter was further studied. Simulation and practical test results showed that the new acquisition algorithm had high sensitivity, stronger adaptability for weak signal, and less computation, and that nonlinear filtering methods could not only be applied to KFPLL, but also track high dynamic signal of 100g.

  6. Digital audio broadcasting: Measuring techniques and coverage performance for a medium power VHF single frequency network

    NASA Astrophysics Data System (ADS)

    Maddocks, M. C. D.; Eng, C.; Pullen, I. R.; Green, J. A.

    1995-02-01

    The advent of digital formats such as CD has created demand for uniformly high audio quality from radio. In order to provide such high-quality stereo reception, a Digital Audio Broadcasting (DAB) system capable of reliable reception in vehicles and on portables has been developed by the European EUREKA 147 Project. As a VHF frequency allocation would appear most suitable for the introduction of terrestrial broadcasting of DAB in the United Kingdom, the BBC is undertaking a major experiment to test the EUREKA DAB system and to generate data to allow efficient planning of its transmitter network. A network of four, 1 kW e.r.p., VHF transmitters has been installed to cover the London area in England. This Report describes the experimental program and the rationale and measurement techniques behind it. The results show a wide-area coverage from the transmitter network which is in reasonable agreement with computer predictions. This indicates that the current transmitting and receiving equipment (built to the EUREKA specification) is operating in the way that would be expected from theoretical studies and simulation. The results also provide quantitative values which can be used for coverage prediction and for international co-ordination of services. Finally, the performance of the system demonstrates a number of the benefits of the EUREKA DAB system for mobile and portable reception.

  7. Low-frequency wiggler modes in the free-electron laser with a dusty magnetoplasma medium

    NASA Astrophysics Data System (ADS)

    Jafari, S.

    2015-07-01

    An advanced incremental scheme for generating tunable coherent radiation in a free-electron laser has been presented: the basic concept is the use of a relativistic electron beam propagating through a magnetized dusty plasma channel where dust helicon, dust Alfven and coupled dust cyclotron-Alfven waves can play a role as a low-frequency wiggler, triggering coherent emissions. The wiggler wavelength at the sub-mm level allows one to reach the wavelength range from a few nm down to a few Å with moderately relativistic electrons of kinetic energies of a few tens/hundreds of MeV. The laser gain and the effects of beam self-electric and self-magnetic fields on the gain have been estimated and compared with findings of the helical magnetic and electromagnetic wigglers in vacuum. To study the chaotic regions of the electron motion in the dusty plasma wave wiggler, a time independent Hamiltonian has been obtained. The Poincare surface of a section map has been used numerically to analyze the nonintegrable system where chaotic regions in phase-space emerge. This concept opens a path toward a new generation of synchrotron sources based on compact plasma structures.

  8. Detection of traveling ionospheric disturbances by medium-frequency Doppler sounding using AM radio transmissions

    NASA Astrophysics Data System (ADS)

    Chilcote, M.; LaBelle, J.; Lind, F. D.; Coster, A. J.; Miller, E. S.; Galkin, I. A.; Weatherwax, A. T.

    2015-03-01

    Nighttime traveling ionosphere disturbances (TIDs) propagating in the lower F region of the ionosphere have been detected by measuring time variations in the Doppler shifts of commercial AM radio broadcast signals. Three receivers, components of the Intercepted Signals for Ionospheric Science (ISIS) Array software radio instrumentation network in the northeastern United States, recorded signals from two radio stations during 11 nights in March-April, 2012. By combining these measurements, TIDs were detected as approximately 40min periodic variations in the frequencies of the received signals resulting from Doppler shifts produced by the ionosphere. The variations had amplitudes of up to a few tenths of a hertz and were correlated across the array. For one study interval, 0000-0400 UT on 13 April 2012, simultaneous GPS total electron content, Digisonde®, and Super Dual-Auroral Radar Network coherent backscatter radar measurements confirmed the detection of TIDs with the same characteristics. Besides TIDs, the receiver network often detected large (nearly 1 Hz) upward (downward) Doppler shifts of the AM broadcast signals at the dawn (dusk) terminator. These results demonstrate that AM radio signals can be used for detection and monitoring of nighttime TIDs and related effects.

  9. Effects of Three Different Resistance Training Frequencies on Jump, Sprint, and Repeated Sprint Ability Performance in Professional Futsal Players.

    PubMed

    Paz-Franco, Adrián; Rey, Ezequiel; Barcala-Furelos, Roberto

    2017-02-21

    The aim of this study was to examine the effect of 3 different resistance training frequencies (one strength training session per week (1W), two strength training sessions per week (2W) or one strength training session every second week (0.5W)) on jump, sprint and repeated sprint performance (RSA) in professional futsal players. Thirty-five futsal players were randomized into 1 of 3 groups, the 1W group (n= 12), 2W group (n= 12), or the 0.5W group (n= 11). The players performed the same resistance training during 6 weeks and only training frequency differed between the groups. Within-group analysis showed significant improvements in jump (p≤0.001, Effect Size (ES)= 0.13-0.35), sprint (p≤0.001, ES= 0.48-0.71), and RSA (p≤0.01, ES= 0.22-0.63) from pretest to posttest in 1W and 2W. However, no significant (p>0.05) pre-post changes were observed for the 0.5W in any variable. In the between-groups analysis, significant better results were found in jump (p≤0.01), sprint (p≤0.01), and RSA performance (p≤0.01) in the 1W group and 2W group in comparison with 0.5W group. Also, jump (p≤0.05) and 5 m sprint (p≤0.05) performances was significantly better in the 2W group in comparison with 1W group. In conclusion, the current study showed that 6 weeks of RT one or two times per week in addition to typical futsal training, produced significant improvements in jump, sprint and RSA performance. Additionally, RT one every second week may be sufficient to maintain physical fitness in professional futsal players. This information may be useful for coaches when planning training contents during congested fixture schedules or in periods where the emphasis need to be put on other qualities and spend as little time as possible on maintaining or increasing physical performance.

  10. Development of a new medium frequency EM device: Mapping soil water content variations using electrical conductivity and dielectric permittivity

    NASA Astrophysics Data System (ADS)

    Kessouri, P.; Buvat, S.; Tabbagh, A.

    2012-12-01

    Both electrical conductivity and dielectric permittivity of soil are influenced by its water content. Dielectric permittivity is usually measured in the high frequency range, using GPR or TDR, where the sensitivity to water content is high. However, its evaluation is limited by a low investigation depth, especially for clay rich soils. Electrical conductivity is closely related not only to soil water content, but also to clay content and soil structure. A simultaneous estimation of these electrical parameters can allow the mapping of soil water content variations for an investigation depth close to 1m. In order to estimate simultaneously both soil electrical conductivity and dielectric permittivity, an electromagnetic device working in the medium frequency range (between 100 kHz and 10 MHz) has been designed. We adopted Slingram geometry for the EM prototype: its PERP configuration (vertical transmission loop Tx and horizontal measuring loop Rx) was defined using 1D ground models. As the required investigation depth is around 1m, the coil spacing was fixed to 1.2m. This prototype works in a frequency range between 1 and 5 MHz. After calibration, we tested the response of prototype to objects with known properties. The first in situ measurements were led on experimental sites with different types of soils and different water content variations (artificially created or natural): sandy alluvium on a plot of INRA (French National Institute for Agricultural Research) in Orléans (Centre, France), a clay-loam soil on an experimental site in Estrée-Mons (Picardie, France) and fractured limestone at the vicinity of Grand (Vosges, France). In the case of the sandy alluvium, the values of dielectric permittivity measured are close to those of HF permittivity and allow the use of existing theoretical models to determine the soil water content. For soils containing higher amount of clay, the coupled information brought by the electrical conductivity and the dielectric

  11. Multi-frequency based location search algorithm of small electromagnetic inhomogeneities embedded in two-layered medium

    NASA Astrophysics Data System (ADS)

    Park, Won-Kwang; Park, Taehoon

    2013-07-01

    In this paper, we consider a problem for finding the locations of electromagnetic inhomogeneities completely embedded in homogeneous two layered medium. For this purpose, we present a filter function operated at several frequencies and design an algorithm for finding the locations of such inhomogeneities. It is based on the fact that, the collected Multi-Static Response (MSR) matrix can be modeled via a rigorous asymptotic expansion formula of the scattering amplitude due to the presence of such inhomogeneities. In order to show the effectiveness, we compare the proposed algorithm with traditional MUltiple SIgnal Classification (MUSIC) algorithm and Kirchhoff migration. Various numerical results demonstrate that the proposed algorithm is robust with respect to random noise and yields more accurate location than the MUSIC algorithm and Kirchhoff migration.

  12. Generation of radio frequency induced metastable xenon as a gain medium for diode pumped rare gas laser systems

    NASA Astrophysics Data System (ADS)

    Andreozzi, Jacqueline Marie

    The pursuit of novel, hybrid methods of achieving lasing from the rare gases has recently been a topic of interest in the field of high energy laser systems. This investigation presents the construction and execution of an experimental setup designed to generate metastable xenon (Xe*) to determine its potential to perform as a high power laser gain medium in a similar capacity as the alkali metals in Diode Pumped Alkali Lasers. A capacitively coupled radio frequency discharge was used to light plasma from naturally abundant xenon, thus exciting the 6s[3/2]2 metastable state. The metastable xenon was probed with a tunable diode laser at 882.2 and 904.8 nanometers, and absorption was detected to verify the presence of Xe* atoms. The absorption profiles are reported with in-depth calculations of the isotope shift and hyperfine structure of each absorption line. Preliminary calculations for the properties of the proposed laser system are also presented.

  13. Influence of nutrient loads, feeding frequency and inoculum source on growth of Chlorella vulgaris in digested piggery effluent culture medium.

    PubMed

    Kumar, Martin S; Miao, Zhihong H; Wyatt, Sandy K

    2010-08-01

    Large amount of waste produced in the livestock industry could be reused to produce valuable products such as microalgae, which are used predominantly in the primary treatment of wastewater for bioremediation. In this study digested piggery effluent was used as nutrient source to substitute mineral nutrients for culturing feed grade Chlorella vulgaris. Two experiments were conducted to investigate the effect of total ammonia nitrogen (TAN) levels, inoculum mediums and the feeding frequencies on the performance of C. vulgaris. The first experimental results showed that 20mg TAN/l in the culture media resulted in better algal SGR (0.345/day; P>0.05). The adding 200 ml effluent into 10 l culture medium at the start (20.6 mg TAN/l) in the second experiment resulted in a large increase of algal population from day 1 to 6 and reached 11.9 million algae/ml at day 6. This study indicated that high production of C. vulgaris could be achieved at short time by feeding digested effluent once. (c) 2010. Published by Elsevier Ltd. All rights reserved.

  14. Accurate reconstruction of the optical parameter distribution in participating medium based on the frequency-domain radiative transfer equation

    NASA Astrophysics Data System (ADS)

    Qiao, Yao-Bin; Qi, Hong; Zhao, Fang-Zhou; Ruan, Li-Ming

    2016-12-01

    Reconstructing the distribution of optical parameters in the participating medium based on the frequency-domain radiative transfer equation (FD-RTE) to probe the internal structure of the medium is investigated in the present work. The forward model of FD-RTE is solved via the finite volume method (FVM). The regularization term formatted by the generalized Gaussian Markov random field model is used in the objective function to overcome the ill-posed nature of the inverse problem. The multi-start conjugate gradient (MCG) method is employed to search the minimum of the objective function and increase the efficiency of convergence. A modified adjoint differentiation technique using the collimated radiative intensity is developed to calculate the gradient of the objective function with respect to the optical parameters. All simulation results show that the proposed reconstruction algorithm based on FD-RTE can obtain the accurate distributions of absorption and scattering coefficients. The reconstructed images of the scattering coefficient have less errors than those of the absorption coefficient, which indicates the former are more suitable to probing the inner structure. Project supported by the National Natural Science Foundation of China (Grant No. 51476043), the Major National Scientific Instruments and Equipment Development Special Foundation of China (Grant No. 51327803), and the Foundation for Innovative Research Groups of the National Natural Science Foundation of China (Grant No. 51121004).

  15. The frequency of different CGG-repeat alleles in the FMR-1 gene in the general population and special populations

    SciTech Connect

    Holden, J.J.A. |; Chalifoux, M.; Wing, M.

    1994-09-01

    The fragile X (FRAXA) syndrome is the most common inherited form of developmental disability and was the first genetic disorder in which the mechanism of mutation is triplet repeat expansion. The normal fragile X mental retardation-1 gene has 6-52 copies of the CGG-repeat; affected males have extensive amplification, coupled with methylation and gene inactivation; and carriers have between about 55 and 200 copies. There is some overlap in the 45-55 repeat range, with some alleles showing stable and othres unstable transmission. There have been several estimates of the incidence of the FRAXA syndrome, based on testing of special populations using chromosome analysis and the range is 1/750-1/2000. Because of the high burden associated with this syndrome, and in the face of discussions about population screening, it is important to know the actual incidence of mutations in this gene, as well as the distribution of unstable repeats above 45 copes. We have initiated a general population screening to examine 50,000 newborn samples using PCR, and have developed a rapid, inexpensive and reliable method for amplifying the CGG-repeat from Guthrie spots. In the first 1600 samples examined, we found 15 alleles with greater than 45 CGG-repeats, with the highest being 61 repeats.

  16. Case-control study of allele frequencies of 15 short tandem repeat loci in males with impulsive violent behavior.

    PubMed

    Yang, Chun; Ba, Huajie; Gao, Zhiqin; Zhao, Hanqing; Yu, Haiying; Guo, Wei

    2013-12-01

    Analysis of genetic polymorphisms in short tandem repeats (STRs) is an accepted method for detecting associations between genotype and phenotype but it has not previously been used in the study of the genetics of impulsive violent behavior. Compare the prevalence of different polymorphisms in 15 STR loci (D8S1179, D21S11, D7S820, CSF1PO, D3S1358, TH01, D13S317, D16S539, D2S1338, D19S433, vWA, TPOX, D18S51, D5S818 and FGA) between men with a history of impulsive violence and male control subjects without a history of impulsive violence. The distributions of the alleles of the 15 STR loci were compared between 407 cases with impulsive violent behavior and 415 controls using AmpFlSTR(®) Identifiler™ kits. COMPARED TO CONTROLS, THE AVERAGE FREQUENCIES OF THE FOLLOWING ALLELES WERE SIGNIFICANTLY LOWER IN INDIVIDUALS WITH A HISTORY OF VIOLENT BEHAVIOR: allele 10 of TH01 (OR=0.29, 95%CI=0.16-0.52, p<0.0001,), allele 8 of TPOX (OR=0.71, 95%CI=0.58-0.86, p=0.0005), allele 9 of TPOX (OR=0.65, 95%CI=0.47-0.89, p=0.0072) and allele 14 of CSF1PO (OR=0.27, 95%CI=0.11-0.68, p=0.0035). One allele was significantly higher in cases than controls: allele 11 of TPOX (OR=1.79, 95%CI=1.45-2.22, p<0.0001). To the best of our knowledge, this is the first behavioral genetic study that clearly demonstrates a close relationship between specific genetic markers and impulsive aggression in non-psychiatric offenders. Further prospective work will be needed to determine whether or not the alleles identified can be considered risk factors for impulsive aggression and, if so, the underlying mechanisms that result in this relationship.

  17. The effects of sampling frequency on the climate statistics of the European Centre for Medium-Range Weather Forecasts

    SciTech Connect

    Phillips, T.J.; Gates, W.L. ); Arpe, K. )

    1992-12-20

    The effects of sampling frequency on the first- and second-moment statistics of selected European Centre for Medium-Range Weather Forecasts (ECMWF) model variables are investigated in a simulation of perpetual July' with a diurnal cycle included and with surface and atmospheric fields saved at hourly intervals. The shortest characteristic time scales are those of ground heat fluxes and temperatures, precipitation and runoff, convective processes, cloud properties, and atmospheric vertical motion, while the longest time scales are exhibited by soil temperature and moisture, surface pressure, and atmospheric specific humidity, temperature, and wind. The time scales of surface heat and momentum fluxes and of convective processes are substantially shorter over land than over oceans. An appropriate sampling frequency for each model variable is obtained by comparing the estimates of first- and second-moment statistics determined at intervals ranging from 2 to 24 hours with the best' estimates obtained from hourly sampling. Relatively accurate estimation of first- and second-moment climate statistics can be achieved by sampling a model variable at intervals that usually are longer than the bandwidth of its time series but that often are shorter than its characteristic time scale. The superior estimates of first-moment statistics are accompanied by inferior estimates of the variance of the daily means due to the presence of systematic biases, but these probably can be avoided by defining a different measure of low-frequency variability. Estimates of the intradiurnal variance of accumulated precipitation and surface runoff also are strongly impacted by the length of the storage interval. In light of these results, several alternative strategies for storage of the EMWF model variables are recommended. 20 refs., 9 figs., 1 tab.

  18. Wave number refraction and frequency modulation of medium scale gravity waves in 3-dimensional time-dependent background flows

    NASA Astrophysics Data System (ADS)

    Senf, Fabian; Achatz, Ulrich

    2010-05-01

    Going beyond the frame of classical vertical column thinking the inclusion of horizontal gradients of a background flow in the description of gravity waves (GWs) can have important impacts on GW propagation and its action back on that type of flows. The horizontal wave number and the wave-related horizontal pseudo-momentum can be refracted to different scales and azimuth directions which may lead to substantial changes in regions of dissipative pseudo-momentum deposition and therefore mean flow forcing. In this sense wave number refraction can have a remote effect in a distant dissipation region. Additionally, the time dependence of a background flow may lead to changes in the absolute, or sometimes called ground-based, frequency of the GWs moving through it. For periodic background flows a periodic frequency modulation is excited. Beside the conservative transient forcing the periodicity of frequency also changes the background flow forcing in dissipation regions. This effect does not appear in the commonly used approximation of an instantaneously adjusting GW train. In our contribution we use a sophisticated ray tracing method to infer the effects of the time dependence and horizontal gradients of diurnal solar-thermal tides plus a realistic 3-dimensional steady mean flow on the propagation of medium scale gravity waves in the middle atmosphere. Strongest wave number refraction and frequency modulation effects occur for slowly propagating GWs. Due to large tidal wind variations in the upper mesosphere most parts of the assumed GW spectrum are slowed down in critical layer type regions. Then, the combined action of horizontal wave number refraction and frequency modulation induce changes in the horizontal phase speed which may exceed orders of magnitude compared to the initial phase speed. The phase speed variations have the tendency to follow the shape of the tidal background wind. This effect leads to less critical layer filtering of GWs and therefore decreased

  19. Rich Medium Composition Affects Escherichia coli Survival, Glycation, and Mutation Frequency during Long-Term Batch Culture.

    PubMed

    Kram, Karin E; Finkel, Steven E

    2015-07-01

    Bacteria such as Escherichia coli are frequently grown to high density to produce biomolecules for study in the laboratory. To achieve this, cells can be incubated in extremely rich media that increase overall cell yield. In these various media, bacteria may have different metabolic profiles, leading to changes in the amounts of toxic metabolites produced. We have previously shown that stresses experienced during short-term growth can affect the survival of cells during the long-term stationary phase (LTSP). Here, we incubated cells in LB, 2× yeast extract-tryptone (YT), Terrific Broth, or Super Broth medium and monitored survival during the LTSP, as well as other reporters of genetic and physiological change. We observe differential cell yield and survival in all media studied. We propose that differences in long-term survival are the result of changes in the metabolism of components of the media that may lead to increased levels of protein and/or DNA damage. We also show that culture pH and levels of protein glycation, a covalent modification that causes protein damage, affect long-term survival. Further, we measured mutation frequency after overnight incubation and observed a correlation between high mutation frequencies at the end of the log phase and loss of viability after 4 days of LTSP incubation, indicating that mutation frequency is potentially predictive of long-term survival. Since glycation and mutation can be caused by oxidative stress, we measured expression of the oxyR oxidative stress regulator during log-phase growth and found that higher levels of oxyR expression during the log phase are consistent with high mutation frequency and lower cell density during the LTSP. Since these complex rich media are often used when producing large quantities of biomolecules in the laboratory, the observed increase in damage resulting in glycation or mutation may lead to production of a heterogeneous population of plasmids or proteins, which could affect the

  20. Rich Medium Composition Affects Escherichia coli Survival, Glycation, and Mutation Frequency during Long-Term Batch Culture

    PubMed Central

    Kram, Karin E.

    2015-01-01

    Bacteria such as Escherichia coli are frequently grown to high density to produce biomolecules for study in the laboratory. To achieve this, cells can be incubated in extremely rich media that increase overall cell yield. In these various media, bacteria may have different metabolic profiles, leading to changes in the amounts of toxic metabolites produced. We have previously shown that stresses experienced during short-term growth can affect the survival of cells during the long-term stationary phase (LTSP). Here, we incubated cells in LB, 2× yeast extract-tryptone (YT), Terrific Broth, or Super Broth medium and monitored survival during the LTSP, as well as other reporters of genetic and physiological change. We observe differential cell yield and survival in all media studied. We propose that differences in long-term survival are the result of changes in the metabolism of components of the media that may lead to increased levels of protein and/or DNA damage. We also show that culture pH and levels of protein glycation, a covalent modification that causes protein damage, affect long-term survival. Further, we measured mutation frequency after overnight incubation and observed a correlation between high mutation frequencies at the end of the log phase and loss of viability after 4 days of LTSP incubation, indicating that mutation frequency is potentially predictive of long-term survival. Since glycation and mutation can be caused by oxidative stress, we measured expression of the oxyR oxidative stress regulator during log-phase growth and found that higher levels of oxyR expression during the log phase are consistent with high mutation frequency and lower cell density during the LTSP. Since these complex rich media are often used when producing large quantities of biomolecules in the laboratory, the observed increase in damage resulting in glycation or mutation may lead to production of a heterogeneous population of plasmids or proteins, which could affect the

  1. The effects of sampling frequency on the climate statistics of the European Centre for Medium-Range Weather Forecasts

    NASA Astrophysics Data System (ADS)

    Phillips, Thomas J.; Gates, W. Lawrence; Arpe, Klaus

    1992-12-01

    The effects of sampling frequency on the first- and second-moment statistics of selected European Centre for Medium-Range Weather Forecasts (ECMWF) model variables are investigated in a simulation of "perpetual July" with a diurnal cycle included and with surface and atmospheric fields saved at hourly intervals. The shortest characteristic time scales (as determined by the e-folding time of lagged autocorrelation functions) are those of ground heat fluxes and temperatures, precipitation and runoff, convective processes, cloud properties, and atmospheric vertical motion, while the longest time scales are exhibited by soil temperature and moisture, surface pressure, and atmospheric specific humidity, temperature, and wind. The time scales of surface heat and momentum fluxes and of convective processes are substantially shorter over land than over oceans. An appropriate sampling frequency for each model variable is obtained by comparing the estimates of first- and second-moment statistics determined at intervals ranging from 2 to 24 hours with the "best" estimates obtained from hourly sampling. Relatively accurate estimation of first- and second-moment climate statistics (10% errors in means, 20% errors in variances) can be achieved by sampling a model variable at intervals that usually are longer than the bandwidth of its time series but that often are shorter than its characteristic time scale. For the surface variables, sampling at intervals that are nonintegral divisors of a 24-hour day yields relatively more accurate time-mean statistics because of a reduction in errors associated with aliasing of the diurnal cycle and higher-frequency harmonics. The superior estimates of first-moment statistics are accompanied by inferior estimates of the variance of the daily means due to the presence of systematic biases, but these probably can be avoided by defining a different measure of low-frequency variability. Estimates of the intradiurnal variance of accumulated

  2. A Randomized Clinical Trial Comparing the Effectiveness of Electroacupuncture versus Medium-Frequency Electrotherapy for Discogenic Sciatica

    PubMed Central

    Wang, Yang; Wang, Zhao; Wang, Chao; Ding, Wentao

    2017-01-01

    Objective. To investigate the short- and long-term effects of electroacupuncture (EA) compared with medium-frequency electrotherapy (MFE) on chronic discogenic sciatica. Methods. One hundred participants were randomized into two groups to receive EA (n = 50) or MFE (n = 50) for 4 weeks. A 28-week follow-up of the two groups was performed. The primary outcome measure was the average leg pain intensity. The secondary outcome measures were the low back pain intensity, Oswestry Disability Index (ODI), patient global impression (PGI), drug use frequency, and EA acceptance. Results. The mean changes in the average leg pain numerical rating scale (NRS) scores were 2.30 (1.86–2.57) and 1.06 (0.62–1.51) in the EA and MFE groups at week 4, respectively. The difference was significant (P < 0.001). The long-term follow-up resulted in significant differences. The average leg pain NRS scores decreased by 2.12 (1.70–2.53) and 0.36 (−0.05–0.78) from baseline in the EA and MFE groups, respectively, at week 28. However, low back pain intensity and PGI did not differ significantly at week 4. No serious adverse events occurred. Conclusions. EA showed greater short-term and long-term benefits for chronic discogenic sciatica than MFE, and the effect of EA was superior to that of MFE. The study findings warrant verification. This trial was registered under identifier ChiCTR-IPR-15006370. PMID:28491116

  3. Rapid ambiguity resolution over medium-to-long baselines based on GPS/BDS multi-frequency observables

    NASA Astrophysics Data System (ADS)

    Gong, Xiaopeng; Lou, Yidong; Liu, Wanke; Zheng, Fu; Gu, Shengfeng; Wang, Hua

    2017-02-01

    Medium-long baseline RTK positioning generally needs a long initial time to find an accurate position due to non-negligible atmospheric delay residual. In order to shorten the initial or re-convergence time, a rapid phase ambiguity resolution method is employed based on GPS/BDS multi-frequency observables in this paper. This method is realized by two steps. First, double-differenced un-combined observables (i.e., L1/L2 and B1/B2/B3 observables) are used to obtain a float solution with atmospheric delay estimated as random walk parameter by using Kalman filter. This model enables an easy and consistent implementation for different systems and different frequency observables and can readily be extended to use more satellite navigation systems (e.g., Galileo, QZSS). Additional prior constraints for atmospheric information can be quickly added as well, because atmospheric delay is parameterized. Second, in order to fix ambiguity rapidly and reliably, ambiguities are divided into three types (extra-wide-lane (EWL), wide-lane (WL) and narrow-lane (NL)) according to their wavelengths and are to be fixed sequentially by using the LAMBDA method. Several baselines ranging from 61 km to 232 km collected by Trimble and Panda receivers are used to validate the method. The results illustrate that it only takes approximately 1, 2 and 6 epochs (30 s intervals) to fix EWL, WL and NL ambiguities, respectively. More epochs' observables are needed to fix WL and NL ambiguity around local time 14:00 than other time mainly due to more active ionosphere activity. As for the re-convergence time, the simulated results show that 90% of epochs can be fixed within 2 epochs by using prior atmospheric delay information obtained from previously 5 min. Finally, as for positioning accuracy, meter, decimeter and centimeter level positioning results are obtained according to different ambiguity resolution performances, i.e., EWL, WL and NL fixed solutions.

  4. High-order boundary integral equation solution of high frequency wave scattering from obstacles in an unbounded linearly stratified medium

    NASA Astrophysics Data System (ADS)

    Barnett, Alex H.; Nelson, Bradley J.; Mahoney, J. Matthew

    2015-09-01

    We apply boundary integral equations for the first time to the two-dimensional scattering of time-harmonic waves from a smooth obstacle embedded in a continuously-graded unbounded medium. In the case we solve, the square of the wavenumber (refractive index) varies linearly in one coordinate, i.e. (Δ + E +x2) u (x1 ,x2) = 0 where E is a constant; this models quantum particles of fixed energy in a uniform gravitational field, and has broader applications to stratified media in acoustics, optics and seismology. We evaluate the fundamental solution efficiently with exponential accuracy via numerical saddle-point integration, using the truncated trapezoid rule with typically 102 nodes, with an effort that is independent of the frequency parameter E. By combining with a high-order Nyström quadrature, we are able to solve the scattering from obstacles 50 wavelengths across to 11 digits of accuracy in under a minute on a desktop or laptop.

  5. High frequencies of short frameshifts in poly-CA/TG tandem repeats borne by bacteriophage M13 in Escherichia coli K-12.

    PubMed Central

    Levinson, G; Gutman, G A

    1987-01-01

    Slipped-strand mispairing (SSM) may play an major role in repetitive DNA sequence evolution by generating large numbers of short frameshift mutations within simple tandem repeats. Here we examine the frequency and size spectrum of frameshifts generated within poly-CA/TG sequences inserted into bacteriophage M13 in Escherichia coli hosts. The frequency of detectable frameshifts within a 40 bp tract of poly-CA/TG is greater than one percent and increases more than linearly with length, being lower by a factor of four in a 22 bp target sequence. The frequency increases more than 13-fold in mutL and mutS host cells, suggesting that a high proportion of frameshift events are normally repaired by methyl-directed mismatch repair. Of the 87 sequenced frameshifts in this study, 96% result from deletion or insertion of only or two 2 bp repeat units. The most frequent events are 2 bp deletions, 2 bp insertions, and 4 bp deletions, the relative frequencies of these events being about 18:6:1. PMID:3299269

  6. Mitochondrial D-loop (CA)n repeat length heteroplasmy: frequency in a German population sample and inheritance studies in two pedigrees.

    PubMed

    Szibor, Reinhard; Plate, Ines; Heinrich, Marielle; Michael, Mathias; Schöning, Rüdiger; Wittig, Holger; Lutz-Bonengel, Sabine

    2007-05-01

    Sequence analysis of the human mitochondrial genome (mtDNA) has proven to be a valuable tool in forensic identity testing and the analysis of crime scene stains. In contrast to the very expensive sequencing technique, typing of different length variants can greatly facilitate screening of a large number of traces for their relevance during casework. Within the mitochondrial control region, a dinucleotide (CA)( n ) repeat locus is present. To assess the discrimination power of this marker, we have determined (CA)( n ) allele distribution and the frequency of heteroplasmy in a population sample of 2,458 Germans. The inclination to develop heteroplasmic mixtures (CA)( n )/(CA)( n-1) was positively correlated with the number of CA repeats in the mtDNA. In addition, we have studied the inheritance patterns of (CA)( n ) repeat sequence heteroplasmy in two pedigrees. In one pedigree, we also found a length heteroplasmy in the homopolymeric C-tract (nt 303-309). Our data show stable inheritance of heteroplasmy within the homopolymeric C-stretch, but rather unstable inheritance regarding the (CA)( n ) repeat locus.

  7. Sources and Characteristics of Medium Scale Traveling Ionospheric Disturbances Observed by High Frequency Radars in the North American Sector

    NASA Astrophysics Data System (ADS)

    Frissell, N. A.; Baker, J. B.; Ruohoniemi, J. M.; Greenwald, R. A.; Gerrard, A. J.; Miller, E. S.; West, M. L.

    2016-12-01

    Medium-scale traveling ionospheric disturbances (MSTIDs) are wave-like ionospheric perturbations routinely observed by high-frequency radars. We focus on a class of MSTIDs observed during the winter daytime at high latitudes and midlatitudes. The source of these MSTIDs remains uncertain, with the two primary candidates being space weather and lower atmospheric processes. We surveyed observations from four high-latitude and six midlatitude Super Dual Auroral Radar Network radars in the North American sector from November to May 2012 to 2015. The MSTIDs observed have horizontal wavelengths between 150 and 650 km and horizontal velocities between 75 and 325 m/s. In local fall and winter seasons the majority of MSTIDs propagated equatorward, with bearings ranging from 125° to 225° geographic azimuth. No clear correlation with space weather activity as parameterized by AE and SYM-H could be identified. Rather, MSTID observations were found to have a strong correlation with polar vortex dynamics on two timescales. First, a seasonal timescale follows the annual development and decay of the polar vortex. Second, a shorter 2-4 week timescale again corresponds to synoptic polar vortex variability, including stratospheric warmings. Additionally, statistical analysis shows that MSTIDs are more likely during periods of strong polar vortex. Direct comparison of the MSTID observations with stratospheric zonal winds suggests that a wind filtering mechanism may be responsible for the strong correlation. Collectively, these observations suggest that polar atmospheric processes, rather than space weather activity, are primarily responsible for controlling the occurrence of high-latitude and midlatitude winter daytime MSTIDs.

  8. Model-data comparison of high frequency compressional wave attenuation in water-saturated granular medium with bimodal grain size distribution.

    PubMed

    Yang, Haesang; Seong, Woojae; Lee, Keunhwa

    2017-08-19

    Several acoustic models, such as the poro-elastic model, visco-elastic model, and multiple scattering model, have been used for describing the dispersion relation in a porous granular medium. However, these models are based on continuum or scattering theory, and therefore cannot explain the broadband measurements in cases where scattering and non-scattering losses co-exist. Additionally, since the models assume that the porous granular medium consists of grains of identical size (unimodal size distribution), the models does not account for the behavior of wave dispersion in a medium that has a distribution of differing grain sizes. As an alternative approach, this study proposes a new broadband attenuation model that describes the high frequency dispersion relation for the p-wave in the case of elastic grain scatterers existing in the background fluid medium. The broadband model combines the Biot-Stoll plus grain contact squirt and shear flow (BICSQS) model and the quasicrystalline approximation (QCA) multiple scattering model. Additionally, distribution of grain size effect is examined rudimentarily through consideration of bimodal grain size distribution. Through the quantitative analysis of the broadband model and measured data, it is shown that the model can explain the attenuation dependencies of frequency and grain size distribution for a water-saturated granular medium in the frequency range from 350kHz to 1.1MHz. This study can be applied to the high frequency acoustic SONAR modeling and design in the water-saturated environment. Copyright © 2017 Elsevier B.V. All rights reserved.

  9. Complete sequencing and comparative analyses of the pepper (Capsicum annuum L.) plastome revealed high frequency of tandem repeats and large insertion/deletions on pepper plastome.

    PubMed

    Jo, Yeong Deuk; Park, Jongsun; Kim, Jungeun; Song, Wonho; Hur, Cheol-Goo; Lee, Yong-Hwan; Kang, Byoung-Cheorl

    2011-02-01

    Plants in the family Solanaceae are used as model systems in comparative and evolutionary genomics. The complete chloroplast genomes of seven solanaceous species have been sequenced, including tobacco, potato and tomato, but not peppers. We analyzed the complete chloroplast genome sequence of the hot pepper, Capsicum annuum. The pepper chloroplast genome was 156,781 bp in length, including a pair of inverted repeats (IR) of 25,783 bp. The content and the order of 133 genes in the pepper chloroplast genome were identical to those of other solanaceous plastomes. To characterize pepper plastome sequence, we performed comparative analysis using complete plastome sequences of pepper and seven solanaceous plastomes. Frequency and contents of large indels and tandem repeat sequences and distribution pattern of genome-wide sequence variations were investigated. In addition, a phylogenetic analysis using concatenated alignments of coding sequences was performed to determine evolutionary position of pepper in Solanaceae. Our results revealed two distinct features of pepper plastome compared to other solanaceous plastomes. Firstly, large indels, including insertions on accD and rpl20 gene sequences, were predominantly detected in the pepper plastome compared to other solanaceous plastomes. Secondly, tandem repeat sequences were particularly frequent in the pepper plastome. Taken together, our study represents unique features of evolution of pepper plastome among solanaceous plastomes.

  10. Signature of 3-4 day planetary waves in the equatorial ionospheric F layer height and medium frequency radar winds over Tirunelveli (8.7oN)

    NASA Astrophysics Data System (ADS)

    Sundararaman, Sathishkumar

    Signature of 3-4 day planetary waves in the equatorial ionospheric F layer height and medium frequency radar winds over Tirunelveli (8.7oN) S. Sathishkumar1, R. Dhanya1, K. Emperumal1, D. Tiwari2, S. Gurubaran1 and A. Bhattacharyya2 1. Equatorial Geophysical Research Laboratory, Indian Institute of Geomagnetism, Tirunelveli, India 2. Indian Institute of Geomagnetism, Navi Mumbai, India Email: sathishmaths@gmail.com Abstract The equatorial atmosphere-ionosphere system has been studied theoretically and observationally in the past. In the equatorial atmosphere, oscillations with periods of 3-4 days are often observed in the medium frequency (MF) radar over Tirunelveli (8.7oN, 77.8oE, 1.34oN geomag. lat.). Earlier observations show the clear evidence that these waves can propagate from the stratosphere to ionosphere. A digital ionosonde has been providing useful information on several ionospheric parameters from the same site. Simultaneous observations of mesospheric winds using medium frequency radar and F-layer height (h'F) from ionosonde reveal that the 3-4 day wave was evident in both the component during the 01 June 2007 and 31 July 2007. The 3-4 day wave could have an important role in the day to day variability of the equatorial ionosphere evening uplift. Results from an extensive analysis that is being carried out in the direction of 3-4 day wave present in the ionosphere will be presented.

  11. Measuring postural-related changes of spontaneous baroreflex sensitivity after repeated long-duration diving: frequency domain approaches.

    PubMed

    Faes, Luca; Masè, Michela; Nollo, Giandomenico; Chon, Ki H; Florian, John P

    2013-11-01

    Sustained water immersion is thought to modulate orthostatic tolerance to an extent dependent on the duration and repetition over consecutive days of the diving sessions. We tested this hypothesis investigating in ten healthy subjects the potential changes in the cardiovascular response to head-up tilt induced by single and multiple resting air dives. Parametric cross-spectral analysis of spontaneous RR interval and systolic arterial pressure variability was performed in three experimental sessions: before diving (BD), after single 6-hour dive (ASD), and after multiple 6-hour dives (AMD, 5 consecutive days with 18-hour surface interval). From this analysis, baroreflex sensitivity (BRS) was computed as spectral power ratio (αBRS), non-causal transfer function gain (tfBRS) and causal transfer function gain (γBRS) evaluated at low frequency (0.04-0.14Hz) in the supine position (su) as well as in the standing upright position in the early tilt (et) and late tilt (lt) epochs. We found that, while αBRS decreased significantly in et and lt compared to su during all sessions, tfBRS and γBRS decreased during ASD and AMD but not during BD; moreover γBRS evidenced a progressive decrease from BD to ASD and to AMD in both et and lt epochs. These results indicate the necessity of following a causal approach for the estimation of BRS in the frequency domain, and suggest a progressive impairment of the baroreflex response to postural stress after single and multiple dives, which may reflect symptoms of increasing orthostatic intolerance.

  12. Variable Frequency of Plastid RNA Editing among Ferns and Repeated Loss of Uridine-to-Cytidine Editing from Vascular Plants

    PubMed Central

    Guo, Wenhu; Grewe, Felix; Mower, Jeffrey P.

    2015-01-01

    The distinct distribution and abundance of C-to-U and U-to-C RNA editing among land plants suggest that these two processes originated and evolve independently, but the paucity of information from several key lineages limits our understanding of their evolution. To examine the evolutionary diversity of RNA editing among ferns, we sequenced the plastid transcriptomes from two early diverging species, Ophioglossum californicum and Psilotum nudum. Using a relaxed automated approach to minimize false negatives combined with manual inspection to eliminate false positives, we identified 297 C-to-U and three U-to-C edit sites in the O. californicum plastid transcriptome but only 27 C-to-U and no U-to-C edit sites in the P. nudum plastid transcriptome. A broader comparison of editing content with the leptosporangiate fern Adiantum capillus-veneris and the hornwort Anthoceros formosae uncovered large variance in the abundance of plastid editing, indicating that the frequency and type of RNA editing is highly labile in ferns. Edit sites that increase protein conservation among species are more abundant and more efficiently edited than silent and non-conservative sites, suggesting that selection maintains functionally important editing. The absence of U-to-C editing from P. nudum plastid transcripts and other vascular plants demonstrates that U-to-C editing loss is a recurrent phenomenon in vascular plant evolution. PMID:25568947

  13. Variable frequency of plastid RNA editing among ferns and repeated loss of uridine-to-cytidine editing from vascular plants.

    PubMed

    Guo, Wenhu; Grewe, Felix; Mower, Jeffrey P

    2015-01-01

    The distinct distribution and abundance of C-to-U and U-to-C RNA editing among land plants suggest that these two processes originated and evolve independently, but the paucity of information from several key lineages limits our understanding of their evolution. To examine the evolutionary diversity of RNA editing among ferns, we sequenced the plastid transcriptomes from two early diverging species, Ophioglossum californicum and Psilotum nudum. Using a relaxed automated approach to minimize false negatives combined with manual inspection to eliminate false positives, we identified 297 C-to-U and three U-to-C edit sites in the O. californicum plastid transcriptome but only 27 C-to-U and no U-to-C edit sites in the P. nudum plastid transcriptome. A broader comparison of editing content with the leptosporangiate fern Adiantum capillus-veneris and the hornwort Anthoceros formosae uncovered large variance in the abundance of plastid editing, indicating that the frequency and type of RNA editing is highly labile in ferns. Edit sites that increase protein conservation among species are more abundant and more efficiently edited than silent and non-conservative sites, suggesting that selection maintains functionally important editing. The absence of U-to-C editing from P. nudum plastid transcripts and other vascular plants demonstrates that U-to-C editing loss is a recurrent phenomenon in vascular plant evolution.

  14. Recommendations of the DNA Commission of the International Society for Forensic Genetics (ISFG) on quality control of autosomal Short Tandem Repeat allele frequency databasing (STRidER).

    PubMed

    Bodner, Martin; Bastisch, Ingo; Butler, John M; Fimmers, Rolf; Gill, Peter; Gusmão, Leonor; Morling, Niels; Phillips, Christopher; Prinz, Mechthild; Schneider, Peter M; Parson, Walther

    2016-09-01

    The statistical evaluation of autosomal Short Tandem Repeat (STR) genotypes is based on allele frequencies. These are empirically determined from sets of randomly selected human samples, compiled into STR databases that have been established in the course of population genetic studies. There is currently no agreed procedure of performing quality control of STR allele frequency databases, and the reliability and accuracy of the data are largely based on the responsibility of the individual contributing research groups. It has been demonstrated with databases of haploid markers (EMPOP for mitochondrial mtDNA, and YHRD for Y-chromosomal loci) that centralized quality control and data curation is essential to minimize error. The concepts employed for quality control involve software-aided likelihood-of-genotype, phylogenetic, and population genetic checks that allow the researchers to compare novel data to established datasets and, thus, maintain the high quality required in forensic genetics. Here, we present STRidER (http://strider.online), a publicly available, centrally curated online allele frequency database and quality control platform for autosomal STRs. STRidER expands on the previously established ENFSI DNA WG STRbASE and applies standard concepts established for haploid and autosomal markers as well as novel tools to reduce error and increase the quality of autosomal STR data. The platform constitutes a significant improvement and innovation for the scientific community, offering autosomal STR data quality control and reliable STR genotype estimates.

  15. Comparison of the Frequency of Y-short Tandem Repeats Markers between Sadat and Non-Sadat Populations in Isfahan Province of Iran

    PubMed Central

    Seyedebrahimi, Reihaneh; Esfandiari, Ebrahim; Rashidi, Bahman; Salehi, Rasoul; Dahghi, Ali Gholami; Dabiri, Shahriar; Kheirollahi, Majid

    2017-01-01

    Background: Y chromosome is one of the two sex chromosomes and is male specific. Due to limited genetic exchange, the main part of that is passed virtually unchanged from one generation to next generation. The short tandem repeats (STRs) are almost constant on chromosomes that make them as an appropriate factor for use in population genetic studies. In this study, we used the STRs of Y chromosome markers in Sadat families and comparison with other families was investigated. Materials and Methods: In this study, sampling was done from fifty unrelated males of Sadat families and fifty unrelated males of non-Sadat families. After the extraction of DNA from blood samples and primer design, polymerase chain reaction (PCR) was performed for each primer pairs separately. The PCR products were run on agarose gel that followed by running on polyacrylamide gel for better resolution. In addition, some sequenced samples were used as identified markers to determine the length of other alleles in polyacrylamide gel. Results: The survey of six STR in two case and control groups was carried out, and analysis revealed that the frequency of some alleles is different in case group compared to control group. Allele frequency of the markers DYS392, DYS393, DYS19, DYS390, DYS388, and DYS437 on the Y chromosome in Sadat families was quite different in comparison with other families. Conclusions: The reason for these differences in allele frequencies of the Sadat family in comparison with other families is having a common ancestor.

  16. Generation of optical frequency combs via four-wave mixing processes for low- and medium-resolution astronomy

    NASA Astrophysics Data System (ADS)

    Zajnulina, M.; Boggio, J. M. Chavez; Böhm, M.; Rieznik, A. A.; Fremberg, T.; Haynes, R.; Roth, M. M.

    2015-07-01

    We investigate the generation of optical frequency combs through a cascade of four-wave mixing processes in nonlinear fibres with optimised parameters. The initial optical field consists of two continuous-wave lasers with frequency separation larger than 40 GHz (312.7 pm at 1531 nm). It propagates through three nonlinear fibres. The first fibre serves to pulse shape the initial sinusoidal-square pulse, while a strong pulse compression down to sub-100 fs takes place in the second fibre which is an amplifying erbium-doped fibre. The last stage is a low-dispersion highly nonlinear fibre where the frequency comb bandwidth is increased and the line intensity is equalised. We model this system using the generalised nonlinear Schrödinger equation and investigate it in terms of fibre lengths, fibre dispersion, laser frequency separation and input powers with the aim to minimise the frequency comb noise. With the support of the numerical results, a frequency comb is experimentally generated, first in the near infra-red and then it is frequency-doubled into the visible spectral range. Using a MUSE-type spectrograph, we evaluate the comb performance for astronomical wavelength calibration in terms of equidistancy of the comb lines and their stability.

  17. Frequency of the C9orf72 hexanucleotide repeat expansion in patients with amyotrophic lateral sclerosis and frontotemporal dementia: a cross-sectional study

    PubMed Central

    Majounie, Elisa; Renton, Alan E; Mok, Kin; Dopper, Elise GP; Waite, Adrian; Rollinson, Sara; Chiò, Adriano; Restagno, Gabriella; Nicolaou, Nayia; Simon-Sanchez, Javier; van Swieten, John C; Abramzon, Yevgeniya; Johnson, Janel O; Sendtner, Michael; Pamphlett, Roger; Orrell, Richard W; Mead, Simon; Sidle, Katie C; Houlden, Henry; Rohrer, Jonathan D; Morrison, Karen E; Pall, Hardev; Talbot, Kevin; Ansorge, Olaf; Hernandez, Dena G; Arepalli, Sampath; Sabatelli, Mario; Mora, Gabriele; Corbo, Massimo; Giannini, Fabio; Calvo, Andrea; Englund, Elisabet; Borghero, Giuseppe; Floris, Gian Luca; Remes, Anne M; Laaksovirta, Hannu; McCluskey, Leo; Trojanowski, John Q; Van Deerlin, Vivianna M; Schellenberg, Gerard D; Nalls, Michael A; Drory, Vivian E; Lu, Chin-Song; Yeh, Tu-Hsueh; Ishiura, Hiroyuki; Takahashi, Yuji; Tsuji, Shoji; Le Ber, Isabelle; Brice, Alexis; Drepper, Carsten; Williams, Nigel; Kirby, Janine; Shaw, Pamela; Hardy, John; Tienari, Pentti J; Heutink, Peter; Morris, Huw R; Pickering-Brown, Stuart; Traynor, Bryan J

    2012-01-01

    Summary Background We aimed to accurately estimate the frequency of a hexanucleotide repeat expansion in C9orf72 that has been associated with a large proportion of cases of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). Methods We screened 4448 patients diagnosed with ALS (El Escorial criteria) and 1425 patients with FTD (Lund-Manchester criteria) from 17 regions worldwide for the GGGGCC hexanucleotide expansion using a repeat-primed PCR assay. We assessed familial disease status on the basis of self-reported family history of similar neurodegenerative diseases at the time of sample collection. We compared haplotype data for 262 patients carrying the expansion with the known Finnish founder risk haplotype across the chromosomal locus. We calculated age-related penetrance using the Kaplan-Meier method with data for 603 individuals with the expansion. Findings In patients with sporadic ALS, we identified the repeat expansion in 236 (7·0%) of 3377 white individuals from the USA, Europe, and Australia, two (4·1%) of 49 black individuals from the USA, and six (8·3%) of 72 Hispanic individuals from the USA. The mutation was present in 217 (39·3%) of 552 white individuals with familial ALS from Europe and the USA. 59 (6·0%) of 981 white Europeans with sporadic FTD had the mutation, as did 99 (24·8%) of 400 white Europeans with familial FTD. Data for other ethnic groups were sparse, but we identified one Asian patient with familial ALS (from 20 assessed) and two with familial FTD (from three assessed) who carried the mutation. The mutation was not carried by the three Native Americans or 360 patients from Asia or the Pacific Islands with sporadic ALS who were tested, or by 41 Asian patients with sporadic FTD. All patients with the repeat expansion had (partly or fully) the founder haplotype, suggesting a one-off expansion occurring about 1500 years ago. The pathogenic expansion was non-penetrant in individuals younger than 35 years, 50

  18. Numerical solution of Maxwell equations by a finite-difference time-domain method in a medium with frequency and spatial dispersion.

    PubMed

    Potravkin, N N; Perezhogin, I A; Makarov, V A

    2012-11-01

    We propose an alternative method of integration of Maxwell equations. This method is the generalization of a finite-difference time-domain method with an auxiliary differential equation for the case of a linear optical medium with a frequency dispersion and an arbitrary source of spatial dispersion. We apply this method to the problem of the propagation of short plane-wave linearly polarized light pulses in such a medium. It is shown that some features of their propagation are completely different from those that are generally recognized for the linear optical activity phenomenon. For example, in some cases an initially linearly polarized light pulse becomes elliptically polarized during the propagation. This effect is more prominent in the front part of the pulse.

  19. Plasma channel produced by femtosecond laser pulses as a medium for amplifying electromagnetic radiation of the subterahertz frequency range

    SciTech Connect

    Bogatskaya, A V; Volkova, E A; Popov, A M

    2013-12-31

    The electron energy distribution function in the plasma channel produced by a femtosecond laser pulse with a wavelength of 248 nm in atmospheric-pressure gases was considered. Conditions were determined whereby this channel may be employed for amplifying electromagnetic waves up to the terahertz frequency range over the energy spectrum relaxation time ∼10{sup -7} s. Gains were calculated as functions of time and radiation frequency. The effect of electron – electron collisions on the rate of relaxation processes in the plasma and on its ability to amplify the electromagnetic radiation was investigated. (interaction of laser radiation with matter)

  20. Spectral Features of the Interaction of Femtosecond Light Pulses of Different Frequencies near the Boundary of a Kerr Medium

    SciTech Connect

    Krylov, V.N.; Bespalov, V.G.; Stasel'ko, D.I.; Lobanov, S.A.; Miloglyadov, E.V.; Seyfang, G.

    2005-11-15

    The interaction of probe ultraviolet (UV) and intense infrared (IR) pump pulses with a duration of 150 fs in a thin 2-mm-long sample of fused silica has been studied theoretically and experimentally. The spectra of UV radiation at the output of the sample have been measured depending on the time delay between the pulses at the sample input. The maximum shifts of the spectrum, attaining up to 0.22 nm for an IR power density of 3 x 10{sup 11} W/cm{sup 2}, have been observed under conditions of coincidence of the pulses at the sample input and output, which corresponds to a predominant interaction of the probe radiation with the leading and trailing edges of the pump pulse near the boundary of the medium. The observed dependences are interpreted as a manifestation of the cross-phase modulation due to the Kerr nonlinearity of the medium and the dispersion of the group velocities of the UV and IR pulses. The numerical simulations performed taking into account these effects agree well with the experimental data.

  1. 78 FR 65594 - Vehicular Repeaters

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-11-01

    ... changes, and on whether current mobile repeater filter technologies can support reduced frequency... feasibility of adapting SAW filters, or other filter technology, for mobile repeater use. We particularly... mobile repeaters by public safety licensees on certain frequencies in the VHF band. DATES:...

  2. Polarisation singularities in the electric field at a sum-frequency generated by two collinear elliptically polarised Gaussian beams in the bulk of a nonlinear gyrotropic medium

    SciTech Connect

    Makarov, Vladimir A; Perezhogin, I A; Potravkin, N N

    2011-02-28

    Polarisation singularities in the electric field at a sum-frequency generated in the bulk of an isotropic gyrotropic medium with a quadratic nonlinearity are predicted to appear in the case of the collinear interaction of two uniformly elliptically polarised Gaussian beams. The parameters of the fundamental waves are found, corresponding to the formation of lines with circular and linear polarisations (C- and L-lines) in the cross section of the beam at the sum-frequency as well as to the appearance of the regions in the signal beam where the polarisation state varies smoothly from the left-hand circularly polarised state to the right-hand circularly polarised. In this case, the ellipticity degree of the polarisation ellipse takes all possible values, while its orientation remains unchanged. (nonlinear optical phenomena)

  3. Monte carlo diffusion hybrid model for photon migration in a two-layer turbid medium in the frequency domain.

    PubMed

    Alexandrakis, G; Farrell, T J; Patterson, M S

    2000-05-01

    We propose a hybrid Monte Carlo (MC) diffusion model for calculating the spatially resolved reflectance amplitude and phase delay resulting from an intensity-modulated pencil beam vertically incident on a two-layer turbid medium. The model combines the accuracy of MC at radial distances near the incident beam with the computational efficiency afforded by a diffusion calculation at further distances. This results in a single forward calculation several hundred times faster than pure MC, depending primarily on model parameters. Model predictions are compared with MC data for two cases that span the extremes of physiologically relevant optical properties: skin overlying fat and skin overlying muscle, both in the presence of an exogenous absorber. It is shown that good agreement can be achieved for radial distances from 0.5 to 20 mm in both cases. However, in the skin-on-muscle case the choice of model parameters and the definition of the diffusion coefficient can lead to some interesting discrepancies.

  4. Time reversal method for damage detection of cracked plates in the medium frequency range: the case of wavelength-size cracks

    NASA Astrophysics Data System (ADS)

    Pasco, Yann; Pinsonnault, Jérôme; Berry, Alain; Masson, Patrice; Micheau, Philippe

    2006-03-01

    The use of time reversal methods for localization and characterization of damages in plates is usually combined with high frequency guided waves in a local elastic wave propagation formulation. In such a situation, pulses and echos may be clearly separated in time. As a consequence, the diffracted field on a damage with large geometrical dimensions compared to the wavelength used for wave propagation allows to consider the structure itself as "near infinite" because the modal behavior is not apparent. However, those high requencies may not be required and in the presented approach, medium frequencies are used and boundary conditions need to be considered. The interest of this frequency range is in using lightweight signal processing devices limited to low data transfer rates as expected for in flight fuselage skin inspections. It also allows to filter artifacts like very small damages in the structure. This study focuses on the case of wavelengths which are in the order of the largest geometrical dimension of the cracks. In the paper, a modelling tool is first extended to describe the vibration behavior of pristine and damaged finite thin plates in the low and medium frequency range below 50 kHz. The proposed analytical model employs a Hierarchical Trigonometric Functions Set (HTFS) to characterize homogeneous plates with through cracks. To approximate the effect of a small crack in a plate for all combinations of classical boundary conditions, high order approximation functions are required. The proposed approach takes the advantage of the stability of the HTFS for these high orders. A notable advantage of this model is that it does not require a dense uniform meshing of the plate, with a minimum of 10 nodes per wavelength, as most finite element models require. The time reversal concept introduced before is thus validated with this model for a finite plate with known boundary conditions. Experimental validation of the model is conducted in the time domain for

  5. High-frequency and time resolution rocket observations of structured low- and medium-frequency whistler mode emissions in the auroral ionosphere

    NASA Astrophysics Data System (ADS)

    LaBelle, J.; McAdams, K. L.; Trimpi, M. L.

    High bandwidth electric field waveform measurements on a recent auroral sounding rocket reveal structured whistler mode signals at 400-800 kHz. These are observed intermittently between 300 and 500 km with spectral densities 0-10 dB above the detection threshold of 1.5×10-11V2/m2Hz. The lack of correlation with local particle measurements suggests a remote source. The signals are composed of discrete structures, in one case having bandwidths of about 10 kHz and exhibiting rapid frequency variations of the order of 200 kHz per 100 ms. In one case, emissions near the harmonic of the whistler mode signals are detected simultaneously. Current theories of auroral zone whistler mode emissions have not been applied to explain quantitatively the fine structure of these signals, which resemble auroral kilometric radiation (AKR) rather than auroral hiss.

  6. MiniJFil®: A New Safe and Effective Stent for Well-Tolerated Repeated Extracorporeal Shockwave Lithotripsy or Ureteroscopy for Medium-to-Large Kidney Stones?

    PubMed Central

    Vogt, Benoit; Desfemmes, Francois-Noel; Desgrippes, Arnaud; Ponsot, Yves

    2016-01-01

    Background Percutaneous nephrolithotomy (PCNL) is recommended for treating staghorn stones or stones measuring > 20 mm. Extracorporeal shockwave lithotripsy (ESWL) or flexible ureteroscopy (URS) may be used as a complement. However, PCNL can cause trauma to the kidney parenchyma, and patients may find a noninvasive procedure, such as ESWL, to be more attractive. Objectives The aim of this study was to evaluate the clinical efficiency of MiniJFil® stenting associated with ESWL or second-line URS for the treatment of medium-to-large kidney stones. The MiniJFil® is a stent reduced to a suture of 0.3F attached to a renal pigtail. The entire ureter is occupied only by the suture of the stent. Methods We retrospectively analyzed the data of 28 patients. Twenty-four patients had kidney stones measuring > 15 mm (group 1) and four patients had staghorn stones (group 2). All of the patients were fitted with MiniJFil® 2 - 3 weeks before any treatment. ESWL was always our first-line therapy. Stone-free (SF) status was defined as no evidence of stones. Results In group 1, the mean largest and cumulative stone diameters, respectively, were 18.7 ± 5.7 mm and 45.0 ± 12.0 mm. In group 2, the mean volume was 6,288.4 ± 2,733.0 mm3. The overall SF was 96.4% (100% for group 1 and 75% for group 2). The mean number of sessions of ESWL and URS, respectively, was 1.4 ± 0.7 and 0.8 ± 0.9 in group 1 and 4.0 ± 2.0 and 1.5 ± 1.3 in group 2. The mean times to achieve these rates were 3.2 ± 1.7 months and 5.6 ± 2.3 months for groups 1 and 2, respectively. One patient in group 2 was treated with only three sessions of ESWL. Renal colic was observed in only five patients (17.9%). Conclusions MiniJFil® stenting is safe and may be an alternative for the treatment of kidney stones during minimally invasive procedures. PMID:27878116

  7. LASER BEAMS AND RESONATORS: Formation of an inhomogeneously polarised light beam at the sum frequency by two collinear elliptically polarised Gaussian beams focused into a chiral medium

    NASA Astrophysics Data System (ADS)

    Volkov, S. N.; Makarov, Vladimir A.; Perezhogin, I. A.

    2006-09-01

    The distribution of polarisation of a light field in the cross section of a beam at the sum frequency is investigated upon the collinear interaction of two elliptically polarised Gaussian beams in a nonlinear isotropic gyrotropic medium. It is shown that the ellipticity, the angle of rotation of the principal axis of the polarisation ellipse, and the rotation direction of the electric field vector of radiation at the sum frequency in the beam cross section strongly depend on the angle in the polar coordinate system. The ranges of parameters of elliptically polarised fundamental Gaussian beams are found where the cross section of the sum-frequency beam is divided into sectors with different rotation directions of the electric field vector. The equations of the straight lines determining the boundaries of these sectors contain parameters specifying the shape and orientation of polarisation ellipses of the fundamental waves and the ratio of their wave vectors. In the case of opposite circular polarisations of these waves, the ellipticity of the sum-frequency beam does not change in the beam cross section and the principal axes of polarisation ellipses of the light field are oriented perpendicular to the radius in polar coordinates.

  8. Very low frequency earthquakes (VLFEs) detected during episodic tremor and slip (ETS) events in Cascadia using a match filter method indicate repeating events

    NASA Astrophysics Data System (ADS)

    Hutchison, A. A.; Ghosh, A.

    2016-12-01

    Very low frequency earthquakes (VLFEs) occur in transitional zones of faults, releasing seismic energy in the 0.02-0.05 Hz frequency band over a 90 s duration and typically have magntitudes within the range of Mw 3.0-4.0. VLFEs can occur down-dip of the seismogenic zone, where they can transfer stress up-dip potentially bringing the locked zone closer to a critical failure stress. VLFEs also occur up-dip of the seismogenic zone in a region along the plate interface that can rupture coseismically during large megathrust events, such as the 2011 Tohoku-Oki earthquake [Ide et al., 2011]. VLFEs were first detected in Cascadia during the 2011 episodic tremor and slip (ETS) event, occurring coincidentally with tremor [Ghosh et al., 2015]. However, during the 2014 ETS event, VLFEs were spatially and temporally asynchronous with tremor activity [Hutchison and Ghosh, 2016]. Such contrasting behaviors remind us that the mechanics behind such events remain elusive, yet they are responsible for the largest portion of the moment release during an ETS event. Here, we apply a match filter method using known VLFEs as template events to detect additional VLFEs. Using a grid-search centroid moment tensor inversion method, we invert stacks of the resulting match filter detections to ensure moment tensor solutions are similar to that of the respective template events. Our ability to successfully employ a match filter method to VLFE detection in Cascadia intrinsically indicates that these events can be repeating, implying that the same asperities are likely responsible for generating multiple VLFEs.

  9. Intravesical TRPV4 blockade reduces repeated variate stress-induced bladder dysfunction by increasing bladder capacity and decreasing voiding frequency in male rats.

    PubMed

    Merrill, Liana; Vizzard, Margaret A

    2014-08-15

    Individuals with functional lower urinary tract disorders including interstitial cystitis (IC)/bladder pain syndrome (BPS) and overactive bladder (OAB) often report symptom (e.g., urinary frequency) worsening due to stress. One member of the transient receptor potential ion channel vanilloid family, TRPV4, has recently been implicated in urinary bladder dysfunction disorders including OAB and IC/BPS. These studies address the role of TRPV4 in stress-induced bladder dysfunction using an animal model of stress in male rats. To induce stress, rats were exposed to 7 days of repeated variate stress (RVS). Quantitative PCR data demonstrated significant (P ≤ 0.01) increases in TRPV4 transcript levels in urothelium but not detrusor smooth muscle. Western blot analyses of split urinary bladders (i.e., urothelium and detrusor) showed significant (P ≤ 0.01) increases in TRPV4 protein expression levels in urothelial tissues but not detrusor smooth muscle. We previously showed that RVS produces bladder dysfunction characterized by decreased bladder capacity and increased voiding frequency. The functional role of TRPV4 in RVS-induced bladder dysfunction was evaluated using continuous, open outlet intravesical infusion of saline in conjunction with administration of a TRPV4 agonist, GSK1016790A (3 μM), a TRPV4 antagonist, HC067047 (1 μM), or vehicle (0.1% DMSO in saline) in control and RVS-treated rats. Bladder capacity, void volume, and intercontraction interval significantly decreased following intravesical instillation of GSK1016790A in control rats and significantly (P ≤ 0.01) increased following administration of HC067047 in RVS-treated rats. These results demonstrate increased TRPV4 expression in the urothelium following RVS and that TRPV4 blockade ameliorates RVS-induced bladder dysfunction consistent with the role of TRPV4 as a promising target for bladder function disorders. Copyright © 2014 the American Physiological Society.

  10. Unusually high frequency of reconstitution of long terminal repeats in U3-minus retrovirus vectors by DNA recombination or gene conversion.

    PubMed Central

    Olson, P; Temin, H M; Dornburg, R

    1992-01-01

    Recently, we described a retrovirus vector system with which to study formation of cDNA genes (R. Dornburg and H. M. Temin, Mol. Cell. Biol. 6:2328-2334, 1988; Mol. Cell. Biol. 8:64-72, 1990; J. Virol. 64:886-889, 1990). For these studies, retrovirus vectors were constructed in which the U3 region of the 3' long terminal repeat (LTR) was deleted. After one round of retrovirus replication, such vectors formed a provirus with two U3-minus LTRs. However, the insertion of some additional sequences into such vectors promoted vector rearrangements with an efficiency greater than 95%. Such rearranged vectors behaved like vectors with two wild-type LTRs. Proviruses derived from such vectors were investigated by Southern blot analysis, polymerase chain reaction, and DNA sequencing. We found that the U3 region was reconstituted, resulting in vectors with LTRs like wild-type virus. The sequences that reconstituted the U3 region of the vector LTR were derived from LTR sequences present in the helper cell. Since no retroviral protein coding sequences were detected in infected target cells, recombination of vector sequences with coencapsidated helper cell sequences during reverse transcription seems very unlikely. Thus, it appears that the recombination (or gene conversion) events leading to a vector with reconstituted LTRs occurred at the DNA level. The high frequency of this recombination (or gene conversion) was dependent on internal vector sequences. Images PMID:1310753

  11. Stiffness of sphere–plate contacts at MHz frequencies: dependence on normal load, oscillation amplitude, and ambient medium

    PubMed Central

    Vlachová, Jana; König, Rebekka

    2015-01-01

    Summary The stiffness of micron-sized sphere–plate contacts was studied by employing high frequency, tangential excitation of variable amplitude (0–20 nm). The contacts were established between glass spheres and the surface of a quartz crystal microbalance (QCM), where the resonator surface had been coated with either sputtered SiO2 or a spin-cast layer of poly(methyl methacrylate) (PMMA). The results from experiments undertaken in the dry state and in water are compared. Building on the shifts in the resonance frequency and resonance bandwidth, the instrument determines the real and the imaginary part of the contact stiffness, where the imaginary part quantifies dissipative processes. The method is closely analogous to related procedures in AFM-based metrology. The real part of the contact stiffness as a function of normal load can be fitted with the Johnson–Kendall–Roberts (JKR) model. The contact stiffness was found to increase in the presence of liquid water. This finding is tentatively explained by the rocking motion of the spheres, which couples to a squeeze flow of the water close to the contact. The loss tangent of the contact stiffness is on the order of 0.1, where the energy losses are associated with interfacial processes. At high amplitudes partial slip was found to occur. The apparent contact stiffness at large amplitude depends linearly on the amplitude, as predicted by the Cattaneo–Mindlin model. This finding is remarkable insofar, as the Cattaneo–Mindlin model assumes Coulomb friction inside the sliding region. Coulomb friction is typically viewed as a macroscopic concept, related to surface roughness. An alternative model (formulated by Savkoor), which assumes a constant frictional stress in the sliding zone independent of the normal pressure, is inconsistent with the experimental data. The apparent friction coefficients slightly increase with normal force, which can be explained by nanoroughness. In other words, contact splitting (i

  12. Stiffness of sphere-plate contacts at MHz frequencies: dependence on normal load, oscillation amplitude, and ambient medium.

    PubMed

    Vlachová, Jana; König, Rebekka; Johannsmann, Diethelm

    2015-01-01

    The stiffness of micron-sized sphere-plate contacts was studied by employing high frequency, tangential excitation of variable amplitude (0-20 nm). The contacts were established between glass spheres and the surface of a quartz crystal microbalance (QCM), where the resonator surface had been coated with either sputtered SiO2 or a spin-cast layer of poly(methyl methacrylate) (PMMA). The results from experiments undertaken in the dry state and in water are compared. Building on the shifts in the resonance frequency and resonance bandwidth, the instrument determines the real and the imaginary part of the contact stiffness, where the imaginary part quantifies dissipative processes. The method is closely analogous to related procedures in AFM-based metrology. The real part of the contact stiffness as a function of normal load can be fitted with the Johnson-Kendall-Roberts (JKR) model. The contact stiffness was found to increase in the presence of liquid water. This finding is tentatively explained by the rocking motion of the spheres, which couples to a squeeze flow of the water close to the contact. The loss tangent of the contact stiffness is on the order of 0.1, where the energy losses are associated with interfacial processes. At high amplitudes partial slip was found to occur. The apparent contact stiffness at large amplitude depends linearly on the amplitude, as predicted by the Cattaneo-Mindlin model. This finding is remarkable insofar, as the Cattaneo-Mindlin model assumes Coulomb friction inside the sliding region. Coulomb friction is typically viewed as a macroscopic concept, related to surface roughness. An alternative model (formulated by Savkoor), which assumes a constant frictional stress in the sliding zone independent of the normal pressure, is inconsistent with the experimental data. The apparent friction coefficients slightly increase with normal force, which can be explained by nanoroughness. In other words, contact splitting (i.e., a transport of

  13. Discharge physics and influence of the modulation on helium DBD modes in the medium-frequency range at atmospheric pressure

    NASA Astrophysics Data System (ADS)

    Boisvert, Jean-Sébastien; Margot, Joëlle; Massines, Françoise

    2017-04-01

    In this paper the recently reported hybrid mode (a dielectric barrier discharge (DBD) excited by an electric field oscillating at about 1 MHz) is investigated using space and time-resolved imaging together with electrical measurements. In contrast with the helium low-frequency DBD, at 1.6 MHz the light emission is desynchronized with the discharge current. It rather depends on the enhanced rate of stepwise excitation resulting from the massive secondary emission occurring 0.15Ƭ after the discharge current maximum (Ƭ is the excitation wave period). The consequence of ion impacts on the dielectric surfaces is a higher gas and dielectric temperatures as compared to typical helium DBDs. The electrical behavior and the gas temperature of a pulsed dielectric-barrier discharge operated at 1.6 MHz are also described in this paper as a function of the repetition rate (varying from 1 Hz to 10 kHz). The gas temperature is reduced when repetition rates higher or equal to 10 Hz is used. This is related to the gas renewal rate of 8.3 Hz, i.e., gas residence time of 120 ms in our conditions. In addition, due to the memory effect in the gas, the gas gap voltage decreases as the repetition rate increases. However, beyond 100 Hz, the power decreases and the gas gap voltage increases again. As a consequence, for a given power density, the optimal repetition rate is 100 Hz which minimizes the gas temperature without reducing the power density. Contribution to the topical issue "The 15th International Symposium on High Pressure Low Temperature Plasma Chemistry (HAKONE XV)", edited by Nicolas Gherardi and Tomáš Hoder

  14. Low-frequency Observations of Linearly Polarized Structures in the Interstellar Medium near the South Galactic Pole

    NASA Astrophysics Data System (ADS)

    Lenc, E.; Gaensler, B. M.; Sun, X. H.; Sadler, E. M.; Willis, A. G.; Barry, N.; Beardsley, A. P.; Bell, M. E.; Bernardi, G.; Bowman, J. D.; Briggs, F.; Callingham, J. R.; Cappallo, R. J.; Carroll, P.; Corey, B. E.; de Oliveira-Costa, A.; Deshpande, A. A.; Dillon, J. S.; Dwarkanath, K. S.; Emrich, D.; Ewall-Wice, A.; Feng, L.; For, B.-Q.; Goeke, R.; Greenhill, L. J.; Hancock, P.; Hazelton, B. J.; Hewitt, J. N.; Hindson, L.; Hurley-Walker, N.; Johnston-Hollitt, M.; Jacobs, D. C.; Kapińska, A. D.; Kaplan, D. L.; Kasper, J. C.; Kim, H.-S.; Kratzenberg, E.; Line, J.; Loeb, A.; Lonsdale, C. J.; Lynch, M. J.; McKinley, B.; McWhirter, S. R.; Mitchell, D. A.; Morales, M. F.; Morgan, E.; Morgan, J.; Murphy, T.; Neben, A. R.; Oberoi, D.; Offringa, A. R.; Ord, S. M.; Paul, S.; Pindor, B.; Pober, J. C.; Prabu, T.; Procopio, P.; Riding, J.; Rogers, A. E. E.; Roshi, A.; Udaya Shankar, N.; Sethi, S. K.; Srivani, K. S.; Staveley-Smith, L.; Subrahmanyan, R.; Sullivan, I. S.; Tegmark, M.; Thyagarajan, Nithyanandan; Tingay, S. J.; Trott, C.; Waterson, M.; Wayth, R. B.; Webster, R. L.; Whitney, A. R.; Williams, A.; Williams, C. L.; Wu, C.; Wyithe, J. S. B.; Zheng, Q.

    2016-10-01

    We present deep polarimetric observations at 154 MHz with the Murchison Widefield Array (MWA), covering 625 deg2 centered on α = 0hand δ = -27°. The sensitivity available in our deep observations allows an in-band, frequency-dependent analysis of polarized structure for the first time at long wavelengths. Our analysis suggests that the polarized structures are dominated by intrinsic emission but may also have a foreground Faraday screen component. At these wavelengths, the compactness of the MWA baseline distribution provides excellent snapshot sensitivity to large-scale structure. The observations are sensitive to diffuse polarized emission at ˜54‧ resolution with a sensitivity of 5.9 mJy beam-1 and compact polarized sources at ˜2.‧4 resolution with a sensitivity of 2.3 mJy beam-1 for a subset (400 deg2) of this field. The sensitivity allows the effect of ionospheric Faraday rotation to be spatially and temporally measured directly from the diffuse polarized background. Our observations reveal large-scale structures (˜1°-8° in extent) in linear polarization clearly detectable in ˜2 minute snapshots, which would remain undetectable by interferometers with minimum baseline lengths of >110 m at 154 MHz. The brightness temperature of these structures is on average 4 K in polarized intensity, peaking at 11 K. Rotation measure synthesis reveals that the structures have Faraday depths ranging from -2 to 10 rad m-2 with a large fraction peaking at approximately +1 rad m-2. We estimate a distance of 51 ± 20 pc to the polarized emission based on measurements of the in-field pulsar J2330-2005. We detect four extragalactic linearly polarized point sources within the field in our compact source survey. Based on the known polarized source population at 1.4 GHz and non-detections at 154 MHz, we estimate an upper limit on the depolarization ratio of 0.08 from 1.4 GHz to 154 MHz.

  15. The effects of exchange-correlation on high-frequency electrostatic surface wave in magnetized quantum plasma through a porous medium

    NASA Astrophysics Data System (ADS)

    Abdikian, Alireza

    2017-09-01

    In this paper the propagation of an electrostatic surface wave at the interface between a vacuum and quantum plasma through a Brinkman porous medium is studied by considering exchange-correlation effects. A general analytical expression for dispersion relation is derived using the linearized quantum hydrodynamic model in conjunction with Poisson's equation in the presence of a static and constant magnetic field. The growth and instability rates of electrostatic surface waves are obtained and separated. Numerical values are used to summarize and analyze the normalized dispersion relations for overcritical dense plasma condition in different cases. The results show that the behavior of surface plasmon waves can be significantly modified by the exchange-correlation effects which have different influences on the system stability. It is shown that the exchange-correlation effects caused the frequency of such waves to down-shift. It is found that the down-shift of the real part of frequency Re(Ω) by the exchange-correlation effect may increase by either increasing the plasmonic coupling H or increasing the porosity effects. In addition, it is shown that by increasing the magnetic field strength the group velocity is increased. Although the instability of the surface wave is decreased by increasing the plasmonic coupling H, it is increased by increasing the porosity effects ( ν). The obtained results can help us in the physical understanding of the surface magnetized quantum wave on a semi-bounded quantum plasma through a porous media.

  16. Exploration of multi-fold symmetry element-loaded superconducting radio frequency structure for reliable acceleration of low- & medium-beta ion species

    SciTech Connect

    Huang, Shichun; Geng, Rongli

    2015-09-01

    Reliable acceleration of low- to medium-beta proton or heavy ion species is needed for future high-current superconducting radio frequency (SRF) accelerators. Due to the high-Q nature of an SRF resonator, it is sensitive to many factors such as electron loading (from either the accelerated beam or from parasitic field emitted electrons), mechanical vibration, and liquid helium bath pressure fluctuation etc. To increase the stability against those factors, a mechanically strong and stable RF structure is desirable. Guided by this consideration, multi-fold symmetry element-loaded SRF structures (MFSEL), cylindrical tanks with multiple (n>=3) rod-shaped radial elements, are being explored. The top goal of its optimization is to improve mechanical stability. A natural consequence of this structure is a lowered ratio of the peak surface electromagnetic field to the acceleration gradient as compared to the traditional spoke cavity. A disadvantage of this new structure is an increased size for a fixed resonant frequency and optimal beta. This paper describes the optimization of the electro-magnetic (EM) design and preliminary mechanical analysis for such structures.

  17. Repeated nightmares

    MedlinePlus

    ... different from night terrors . Alternative Names Nightmares - repeated; Dream anxiety disorder References American Academy of Family Physicians. Information from your family doctor. Nightmares and night terrors in children. ...

  18. Biomarkers of Dietary Intake Are Correlated with Corresponding Measures from Repeated Dietary Recalls and Food-Frequency Questionnaires in the Adventist Health Study-2123

    PubMed Central

    Fan, Jing; Knutsen, Synnove F; Sabaté, Joan; Bennett, Hannelore

    2016-01-01

    Background: Accurate assessment of diet in study populations is still a challenge. Some statistical strategies that use biomarkers of dietary intake attempt to compensate for the biasing effects of reporting errors. Objective: The objective was to correlate biomarkers of dietary intake with 2 direct measures of dietary intake. Methods: Subjects provided repeated 24-h dietary recalls and 2 food-frequency questionnaires (FFQs) separated by ∼3 y. Correlations between biomarkers and reported dietary intakes as measured by the recalls and FFQs were de-attenuated for within-person variability. The Adventist Health Study-2 (AHS-2) has a large database of biomarkers of dietary intake (blood, urine, adipose tissue) from a calibration study (909 analytic subjects) representing the cohort. Participants were black and non-black Adventists in the United States and Canada. Results: Dietary items with higher-valued de-attenuated correlations (≥0.50) between biomarkers and recalls included some fatty acids (FAs), the non-fish meats, fruit (non-black subjects), some carotenoids, vitamin B-12 (non-black subjects), and vitamin E. Moderately valued correlations (0.30–0.49) were found for very long chain ω-3 (n–3) FAs, some carotenoids, folate, isoflavones, cruciferous vegetables, fruit (black subjects), and calcium. The highest correlation values in non-black and black subjects were 0.69 (urinary 1-methyl-histidine and meat consumption) and 0.72 (adipose and dietary 18:2 ω-6), respectively. Correlations comparing biomarkers with recalls were generally similar for black and non-black subjects, but correlations between biomarkers and the FFQ were slightly lower than corresponding recall correlations. Correlations between biomarkers and a single FFQ estimate (the usual cohort situation) were generally much lower. Conclusions: Many biomarkers that have relatively high-valued correlations with dietary intake were identified and were usually of similar value in black and non

  19. Optimization of short tandem repeats (STR) typing method and allele frequency of 8 STR markers in referring to forensic medicine of Semnan Province.

    PubMed

    Eskandarion, M; Najafi, M; Akbari Eidgahi, M; Alipour Tabrizi, A; Golmohamadi, T

    2015-01-01

    Background and Objective: Short Tandem Repeats (STR) show considerable differences among individuals in the population from which they used for identification. There are various methods for analysis of these STR loci, and capillary electrophoresis method already used as an international standard. Due to the high costs of this process, this study aimed to set up a Multiplex PCR method in some standard STR loci so that we can use its PCR product in STR analysis with different methods of HPLC, GC-Mass, and Capillary Electrophoresis. Materials and Methods: 8 typical STR loci in the identification selected according to their size in the two groups of four (CSF1PO, VWA, D18S51, PentaD and TPOX, Amelogenin, FGA, SE33) from NIST (National Institute of Standards and Technology). The above SSR primers prepared from Genbank and Monoplex PCR was designed based on their size. Then, with the changes in temperature conditions, magnesium ion, primers concentration, and setting-up, Hot Start Multiplex PCR of four markers was carried out. PCR product investigated on the agarose gel electrophoresis (3%) and the results of genotyping analyzed by Genetic Analyzer. Results: The Results showed that all STR loci under study are detectable as Monoplex PCR at a temperature of 62°-66° and 1.5 mM magnesium ion. Moreover, Multiplex PCR results showed that when the concentration of primer and temperature measured by the fixed concentration of magnesium, CSF1PO, and D18S51 loci bands are weaker than desired. Using a standard buffer and set Magnesium conditions against changes in the primer concentration and temperature, when Taq polymerase enzyme is added to test tubes at a temperature of 94°, Multiplex PCR bands are visible desirably. Capillary electrophoresis genotyping results obtained in all eight loci and the Locus FGA had the most allelic diversity and the loci TPOX and CSF1PO had the lowest allelic diversity. TPOX and CSF1PO loci had the lowest allelic frequencies, and FGA locus had

  20. Optimization of short tandem repeats (STR) typing method and allele frequency of 8 STR markers in referring to forensic medicine of Semnan Province

    PubMed Central

    Eskandarion, M; Najafi, M; Akbari Eidgahi, M; Alipour Tabrizi, A; Golmohamadi, T

    2015-01-01

    Background and Objective: Short Tandem Repeats (STR) show considerable differences among individuals in the population from which they used for identification. There are various methods for analysis of these STR loci, and capillary electrophoresis method already used as an international standard. Due to the high costs of this process, this study aimed to set up a Multiplex PCR method in some standard STR loci so that we can use its PCR product in STR analysis with different methods of HPLC, GC-Mass, and Capillary Electrophoresis. Materials and Methods: 8 typical STR loci in the identification selected according to their size in the two groups of four (CSF1PO, VWA, D18S51, PentaD and TPOX, Amelogenin, FGA, SE33) from NIST (National Institute of Standards and Technology). The above SSR primers prepared from Genbank and Monoplex PCR was designed based on their size. Then, with the changes in temperature conditions, magnesium ion, primers concentration, and setting-up, Hot Start Multiplex PCR of four markers was carried out. PCR product investigated on the agarose gel electrophoresis (3%) and the results of genotyping analyzed by Genetic Analyzer. Results: The Results showed that all STR loci under study are detectable as Monoplex PCR at a temperature of 62°-66° and 1.5 mM magnesium ion. Moreover, Multiplex PCR results showed that when the concentration of primer and temperature measured by the fixed concentration of magnesium, CSF1PO, and D18S51 loci bands are weaker than desired. Using a standard buffer and set Magnesium conditions against changes in the primer concentration and temperature, when Taq polymerase enzyme is added to test tubes at a temperature of 94°, Multiplex PCR bands are visible desirably. Capillary electrophoresis genotyping results obtained in all eight loci and the Locus FGA had the most allelic diversity and the loci TPOX and CSF1PO had the lowest allelic diversity. TPOX and CSF1PO loci had the lowest allelic frequencies, and FGA locus had

  1. Wave activity (planetary, tidal) throughout the middle atmosphere (20-100km) over the CUJO network: Satellite (TOMS) and Medium Frequency (MF) radar observations

    NASA Astrophysics Data System (ADS)

    Manson, A. H.; Meek, C. E.; Chshyolkova, T.; Avery, S. K.; Thorsen, D.; MacDougall, J. W.; Hocking, W.; Murayama, Y.; Igarashi, K.

    2005-02-01

    Planetary and tidal wave activity in the tropopause-lower stratosphere and mesosphere-lower thermosphere (MLT) is studied using combinations of ground-based (GB) and satellite instruments (2000-2002). The relatively new MFR (medium frequency radar) at Platteville (40° N, 105° W) has provided the opportunity to create an operational network of middle-latitude MFRs, stretching from 81° W-142° E, which provides winds and tides 70-100km. CUJO (Canada U.S. Japan Opportunity) comprises systems at London (43° N, 81° W), Platteville (40° N, 105° W), Saskatoon (52° N, 107° W), Wakkanai (45° N, 142° E) and Yamagawa (31° N, 131° E). It offers a significant 7000-km longitudinal sector in the North American-Pacific region, and a useful range of latitudes (12-14°) at two longitudes. Satellite data mainly involve the daily values of the total ozone column measured by the Earth Probe (EP) TOMS (Total Ozone Mapping Spectrometer) and provide a measure of tropopause-lower stratospheric planetary wave activity, as well as ozone variability. Climatologies of ozone and winds/tides involving frequency versus time (wavelet) contour plots for periods from 2-d to 30-d and the interval from mid 2000 to 2002, show that the changes with altitude, longitude and latitude are very significant and distinctive. Geometric-mean wavelets for the region of the 40° N MFRs demonstrate occasions during the autumn, winter and spring months when there are similarities in the spectral features of the lower atmosphere and at mesopause (85km) heights. Both direct planetary wave (PW) propagation into the MLT, nonlinear PW-tide interactions, and disturbances in MLT tides associated with fluctuations in the ozone forcing are considered to be possible coupling processes. The complex horizontal wave numbers of the longer period oscillations are provided in frequency contour plots for the TOMS satellite data to demonstrate the differences between lower atmospheric and MLT wave motions and their

  2. Sources and characteristics of medium-scale traveling ionospheric disturbances observed by high-frequency radars in the North American sector

    NASA Astrophysics Data System (ADS)

    Frissell, N. A.; Baker, J. B. H.; Ruohoniemi, J. M.; Greenwald, R. A.; Gerrard, A. J.; Miller, E. S.; West, M. L.

    2016-04-01

    Medium-scale traveling ionospheric disturbances (MSTIDs) are wave-like ionospheric perturbations routinely observed by high-frequency radars. We focus on a class of MSTIDs observed during the winter daytime at high latitudes and midlatitudes. The source of these MSTIDs remains uncertain, with the two primary candidates being space weather and lower atmospheric processes. We surveyed observations from four high-latitude and six midlatitude Super Dual Auroral Radar Network radars in the North American sector from November to May 2012 to 2015. The MSTIDs observed have horizontal wavelengths between ˜150 and 650 km and horizontal velocities between ˜75 and 325 m s-1. In local fall and winter seasons the majority of MSTIDs propagated equatorward, with bearings ranging from ˜125° to 225° geographic azimuth. No clear correlation with space weather activity as parameterized by AE and SYM-H could be identified. Rather, MSTID observations were found to have a strong correlation with polar vortex dynamics on two timescales. First, a seasonal timescale follows the annual development and decay of the polar vortex. Second, a shorter 2-4 week timescale again corresponds to synoptic polar vortex variability, including stratospheric warmings. Additionally, statistical analysis shows that MSTIDs are more likely during periods of strong polar vortex. Direct comparison of the MSTID observations with stratospheric zonal winds suggests that a wind filtering mechanism may be responsible for the strong correlation. Collectively, these observations suggest that polar atmospheric processes, rather than space weather activity, are primarily responsible for controlling the occurrence of high-latitude and midlatitude winter daytime MSTIDs.

  3. Medium-Sized Mammals around a Radioactive Liquid Waste Lagoon at Los Alamos National Laboratory: Uptake of Contaminants and Evaluation of Radio-Frequency Identification Technology

    SciTech Connect

    Leslie A. Hansen; Phil R. Fresquez; Rhonda J. Robinson; John D. Huchton; Teralene S. Foxx

    1999-11-01

    Use of a radioactive liquid waste lagoon by medium-sized mammals and levels of tritium, other selected radionuclides, and metals in biological tissues of the animals were documented at Technical Area 53 (TA-53) of Los Alamos National Laboratory during 1997 and 1998. Rock squirrel (Spermophilus variegates), raccoon (Procyon lotor), striped skunk (Mephitis mephitis), and bobcat (Lynx rufus) were captured at TA-53 and at a control site on the Santa Fe National Forest. Captured animals were anesthetized and marked with radio-frequency identification (RFD) tags and/or ear tags. We collected urine and hair samples for tritium and metals (aluminum, antimony, arsenic, barium, beryllium, cadmium, chromium, copper, lead, mercury, nickel, selenium, silver, and thallium) analyses, respectively. In addition, muscle and bone samples from two rock squirrels collected from each of TA-53, perimeter, and regional background sites were tested for tritium, {sup 137}Cs, {sup 90}Sr, {sup 238}Pu, {sup 239,240}Pu, {sup 241}Am, and total uranium. Animals at TA-53 were monitored entering and leaving the lagoon area using a RFID monitor to read identification numbers from the RFID tags of marked animals and a separate camera system to photograph all animals passing through the monitor. Cottontail rabbit (Sylvilagus spp.), rock squirrel, and raccoon were the species most frequently photographed going through the RFID monitor. Less than half of all marked animals in the lagoon area were detected using the lagoon. Male and female rock squirrels from the lagoon area had significantly higher tritium concentrations compared to rock squirrels from the control area. Metals tested were not significantly higher in rock squirrels from TA-53, although there was a trend toward increased levels of lead in some individuals at TA-53. Muscle and bone samples from squirrels in the lagoon area appeared to have higher levels of tritium, total uranium, and {sup 137}Cs than samples collected from perimeter and

  4. Statistical characterization of high-to-medium frequency mesoscale gravity waves by lidar-measured vertical winds and temperatures in the MLT

    NASA Astrophysics Data System (ADS)

    Lu, Xian; Chu, Xinzhao; Li, Haoyu; Chen, Cao; Smith, John A.; Vadas, Sharon L.

    2017-09-01

    We present the first statistical study of gravity waves with periods of 0.3-2.5 h that are persistent and dominant in the vertical winds measured with the University of Colorado STAR Na Doppler lidar in Boulder, CO (40.1°N, 105.2°W). The probability density functions of the wave amplitudes in temperature and vertical wind, ratios of these two amplitudes, phase differences between them, and vertical wavelengths are derived directly from the observations. The intrinsic period and horizontal wavelength of each wave are inferred from its vertical wavelength, amplitude ratio, and a designated eddy viscosity by applying the gravity wave polarization and dispersion relations. The amplitude ratios are positively correlated with the ground-based periods with a coefficient of 0.76. The phase differences between the vertical winds and temperatures (φW -φT) follow a Gaussian distribution with 84.2±26.7°, which has a much larger standard deviation than that predicted for non-dissipative waves ( 3.3°). The deviations of the observed phase differences from their predicted values for non-dissipative waves may indicate wave dissipation. The shorter-vertical-wavelength waves tend to have larger phase difference deviations, implying that the dissipative effects are more significant for shorter waves. The majority of these waves have the vertical wavelengths ranging from 5 to 40 km with a mean and standard deviation of 18.6 and 7.2 km, respectively. For waves with similar periods, multiple peaks in the vertical wavelengths are identified frequently and the ones peaking in the vertical wind are statistically longer than those peaking in the temperature. The horizontal wavelengths range mostly from 50 to 500 km with a mean and median of 180 and 125 km, respectively. Therefore, these waves are mesoscale waves with high-to-medium frequencies. Since they have recently become resolvable in high-resolution general circulation models (GCMs), this statistical study provides an important

  5. All-photonic quantum repeaters

    NASA Astrophysics Data System (ADS)

    Azuma, Koji; Tamaki, Kiyoshi; Lo, Hoi-Kwong

    2015-04-01

    Quantum communication holds promise for unconditionally secure transmission of secret messages and faithful transfer of unknown quantum states. Photons appear to be the medium of choice for quantum communication. Owing to photon losses, robust quantum communication over long lossy channels requires quantum repeaters. It is widely believed that a necessary and highly demanding requirement for quantum repeaters is the existence of matter quantum memories. Here we show that such a requirement is, in fact, unnecessary by introducing the concept of all-photonic quantum repeaters based on flying qubits. In particular, we present a protocol based on photonic cluster-state machine guns and a loss-tolerant measurement equipped with local high-speed active feedforwards. We show that, with such all-photonic quantum repeaters, the communication efficiency scales polynomially with the channel distance. Our result paves a new route towards quantum repeaters with efficient single-photon sources rather than matter quantum memories.

  6. All-photonic quantum repeaters

    PubMed Central

    Azuma, Koji; Tamaki, Kiyoshi; Lo, Hoi-Kwong

    2015-01-01

    Quantum communication holds promise for unconditionally secure transmission of secret messages and faithful transfer of unknown quantum states. Photons appear to be the medium of choice for quantum communication. Owing to photon losses, robust quantum communication over long lossy channels requires quantum repeaters. It is widely believed that a necessary and highly demanding requirement for quantum repeaters is the existence of matter quantum memories. Here we show that such a requirement is, in fact, unnecessary by introducing the concept of all-photonic quantum repeaters based on flying qubits. In particular, we present a protocol based on photonic cluster-state machine guns and a loss-tolerant measurement equipped with local high-speed active feedforwards. We show that, with such all-photonic quantum repeaters, the communication efficiency scales polynomially with the channel distance. Our result paves a new route towards quantum repeaters with efficient single-photon sources rather than matter quantum memories. PMID:25873153

  7. All-photonic quantum repeaters.

    PubMed

    Azuma, Koji; Tamaki, Kiyoshi; Lo, Hoi-Kwong

    2015-04-15

    Quantum communication holds promise for unconditionally secure transmission of secret messages and faithful transfer of unknown quantum states. Photons appear to be the medium of choice for quantum communication. Owing to photon losses, robust quantum communication over long lossy channels requires quantum repeaters. It is widely believed that a necessary and highly demanding requirement for quantum repeaters is the existence of matter quantum memories. Here we show that such a requirement is, in fact, unnecessary by introducing the concept of all-photonic quantum repeaters based on flying qubits. In particular, we present a protocol based on photonic cluster-state machine guns and a loss-tolerant measurement equipped with local high-speed active feedforwards. We show that, with such all-photonic quantum repeaters, the communication efficiency scales polynomially with the channel distance. Our result paves a new route towards quantum repeaters with efficient single-photon sources rather than matter quantum memories.

  8. Allele frequencies of combined DNA index system (CODIS) and non-CODIS short tandem repeat loci in Goiás, Central Brazil.

    PubMed

    Rodovalho, R G; Santos, G S; Cavalcanti, L M; Moura, B F S M; Rodrigues, E L; Lima, P R; Gigonzac, M A D; Vieira, T C

    2015-07-03

    In studies of human identification, obtaining a high standard of outcomes and satisfactory conclusions are directly related to the use of highly polymorphic molecular markers. In addition to the combined DNA index system (CODIS) group, it is also important to implement non-CODIS markers into the analysis, as they increase the power of discrimination. During the identification process, it is essential to consider the genetic variation among distinct groups of populations, as the allele frequencies are directly associated with the power of discrimination. However, the population of Goiás, a State located in Central Brazil, is characterized by a highly mixed population due to its diverse ethnic origins. In this study, a survey of the allelic frequencies in the Goiás population was carried out using a molecular assembly composed of 21 autosomal loci both from and external to the CODIS group. The new data, for some of the markers used, were statistically similar to those from previous studies. This consistency means that the use of these markers might serve as a parameter for future population comparisons. The results from these analyses further our knowledge of the study of human identification.

  9. Repeating LP events and increases in high-frequency seismic energy preceding the December 1999 eruption of the quiescently active Telica Volcano, Nicaragua

    NASA Astrophysics Data System (ADS)

    Rodgers, M.; Roman, D. C.; Geirsson, H.; Lafemina, P.; Muñoz, A.; Guzman, C.; Tenorio, V.

    2010-12-01

    Telica volcano, Nicaragua, is a ‘quiescently active’ basaltic andesite stratovolcano located in the Central American volcanic front. A high rate of long-period (LP) seismicity has been recorded at Telica since the installation of a single vertical-component 1 Hz seismic sensor (TELN) near its summit in 1993 by the Instituto Nicaragüense de Estudios Territoriales (INETER). Due to the continuously high rate of LPs at Telica, traditional methods of forecasting volcanic activity may not be applicable; therefore an understanding of the nature of precursory changes in Telica’s seismicity is necessary to accurately forecast future volcanic activity. A VEI 2 eruption of Telica occurred on the 29th December 1999, preceded by a series of small explosions between the 3rd-15th October 1999. Here we analyse an eight-month period of seismicity bracketing this activity, in an attempt to identify precursory changes with respect to background seismicity. Between August 1999 and March 2000 over 18,000 seismic events were recorded on TELN. We first calculated the dominant frequencies (i.e. frequency with dominant spectral energy) for all events recorded during this period. A time series of the dominant event frequencies between August 1999 and March 2000 shows a significant increase in the number of high frequency (> 5 Hz) events and, in LP events, a shift in the two dominant spectral energy peaks from 2 Hz and 4 Hz to 2 Hz and 3 Hz in the month before the October 1999 explosions. Next, we selected six representative eight-day periods, three from before the explosions and three from after, for multiplet analysis using waveform cross-correlation. Multiplet analysis of the six selected time periods reveal significant changes in behaviour. In period 1 (more than one month before the explosions) events are poorly correlated. In periods 2 and 3 (less than one month before the explosions) we identified several unique families of LP events, each having high cross-correlation values

  10. Plasma chemistry of the sealed-off slab CO laser active medium pumped by radio-frequency discharge with liquid-nitrogen-cooled electrodes

    NASA Astrophysics Data System (ADS)

    Ionin, A. A.; Kozlov, A. Yu.; Seleznev, L. V.; Sinitsyn, D. V.

    2017-09-01

    The long-term time behavior of the output power of a sealed-off cryogenic slab CO laser pumped by a repetitively pulsed RF discharge and operating on the overtone (λ = 2.6-3.5 μm) vibrational-rotational transitions of the CO molecule was studied experimentally. It is shown that adding of an anomalously large amount of oxygen (up to 50% with respect to the CO concentration) to the initial gas mixture CO : He = 1 : 10 leads to a manyfold (by several tens of times) increase in the duration of the laser operating cycle (until lasing failure due to the degradation of the active medium). In this case, the laser life-time without replacement of the active medium reaches 105-106 pulses. Using various diagnostics (including luminescence spectroscopy and IR and UV absorption spectroscopy), regularities in the time-behavior of the concentrations of the main component of the active medium (CO molecules) and the products of plasmachemical reactions (O3, CO2) generated in the discharge gap during the laser operating cycle are revealed. Time correlation between the characteristics of the active medium and the laser output power are analyzed. A phenomenological approach to describing the entirety of plasmachemical, purely chemical, gas-dynamic, and diffusion processes determining the behavior of the laser output characteristics throughout the laser operating cycle is offered.

  11. Low-Frequency Observations of Galactic Supernova Remnants and the Distribution of Low-Density Ionized Gas in the Interstellar Medium

    DTIC Science & Technology

    1989-12-15

    New long-wavelength observations of Galactic supernova remnants ( SNRs ) at 30.9 and 57.5 MHz are used to derive detailed low-frequency radio spectra...for 32 SNRs . Of these, approximately two-thirds show turnovers at low frequencies, implying the presence of a widespread, but inhomogeneous, ionized... SNRs and to constrain the physical properties of the ionized gas responsible for the absorption. Three generally accepted ionized components of the

  12. Imaging the hydrothermal system beneath the Jigokudani valley, Tateyama volcano, Japan: implications for structures controlling repeated phreatic eruptions from an audio-frequency magnetotelluric survey

    NASA Astrophysics Data System (ADS)

    Seki, Kaori; Kanda, Wataru; Ogawa, Yasuo; Tanbo, Toshiya; Kobayashi, Tomokazu; Hino, Yuta; Hase, Hideaki

    2015-01-01

    This study focuses on the results of an audio-frequency magnetotelluric (AMT) survey across the Jigokudani valley, Tateyama volcano, Japan, to investigate the spatial relationship between the distribution of electrical resistivity and geothermal activity and to elucidate the geologic controls on both its phreatic eruption history and recent increase in phreatic activity. The AMT data were collected at eight locations across the Jigokudani valley in September 2013, with high quality data obtained from most sites, enabling the identification of an underground 2D resistivity structure from the transverse magnetic (TM) mode data. The data obtained during this study provided evidence of a large conductive region beneath the surface of the Jigokudani valley that is underlain by a resistive layer at depths below 500 m. The resistive layer is cut by a relatively conductive region that extends subvertically toward the shallow conductor. The shallow conductive region is divided into an uppermost slightly conductive section that is thought to be a lacustrine sediment layer of an extinct crater lake containing hydrothermal fluids and a lower section containing a mix of volcanic gases and hydrothermal fluids. The low permeability of the clay zone means that the uppermost clayey sediments allow the accumulation of gases in the lower section of the conductive region, suggesting the existence of a cap structure. The deep resistive layer likely consists of units similar to the granitic rocks that are widely exposed throughout the Jigokudani valley. We suggest that the relatively conductive zone that separates these granitic rocks represents a high-temperature volcanic gas conduit, given that the most active fumarole in the Jigokudani valley lies directly along the trajectory of this path.

  13. Effectiveness of myofascial trigger point therapy in chronic back pain patients is considerably increased when combined with a new, integrated, low-frequency shock wave vibrotherapy (Cellconnect Impulse): A two-armed, measurement repeated, randomized, controlled pragmatic trial.

    PubMed

    Schneider, Rainer

    2017-08-04

    The prevalence of chronic back pain poses major challenges for all health care systems and patients worldwide. Myofascial trigger therapy (MT), although a very popular standard non-pharmaceutical form of treatment, only shows small to medium effectiveness. To test a new vibrotreatment (Cellconnect Impulse transmitting low-frequency, vertical shock waves in a routine clinical practice. Eligible patients were adults seeking physiotherapeutic treatment. They were randomly allocated to either six treatments of MT or to six treatments of combined MT and vibrotreatment. Outcome parameters were pain intensity, pain days, pain duration, and quality of life. The pain relieving effects of the combined treatment were very large (d= 1.6). It clearly outperformed MT and considerably improved patients' health related quality of life. Combining MT with Cellconnect Impulse enhances the physiotherapeutic effectiveness of treating chronic back pain.

  14. Review of rigorous coupled-wave analysis and of homogeneous effective medium approximations for high spatial-frequency surface-relief gratings

    NASA Technical Reports Server (NTRS)

    Glytsis, Elias N.; Brundrett, David L.; Gaylord, Thomas K.

    1993-01-01

    A review of the rigorous coupled-wave analysis as applied to the diffraction of electro-magnetic waves by gratings is presented. The analysis is valid for any polarization, angle of incidence, and conical diffraction. Cascaded and/or multiplexed gratings as well as material anisotropy can be incorporated under the same formalism. Small period rectangular groove gratings can also be modeled using approximately equivalent uniaxial homogeneous layers (effective media). The ordinary and extraordinary refractive indices of these layers depend on the gratings filling factor, the refractive indices of the substrate and superstrate, and the ratio of the freespace wavelength to grating period. Comparisons of the homogeneous effective medium approximations with the rigorous coupled-wave analysis are presented. Antireflection designs (single-layer or multilayer) using the effective medium models are presented and compared. These ultra-short period antireflection gratings can also be used to produce soft x-rays. Comparisons of the rigorous coupled-wave analysis with experimental results on soft x-ray generation by gratings are also included.

  15. Low and then high frequency oscillations of distinct right cortical networks are progressively enhanced by medium and long term Satyananda Yoga meditation practice

    PubMed Central

    Thomas, John; Jamieson, Graham; Cohen, Marc

    2014-01-01

    Meditation proficiency is related to trait-like (learned) effects on brain function, developed over time. Previous studies show increases in EEG power in lower frequency bands (theta, alpha) in experienced meditators in both meditation states and baseline conditions. Higher gamma band power has been found in advanced Buddhist meditators, yet it is not known if this occurs in Yoga meditation practices. This study used eLORETA to compare differences in cortical source activity underlying scalp EEG from intermediate (mean experience 4 years) and advanced (mean experience 30 years) Australian meditators from the Satyananda Yoga tradition during a body-steadiness meditation, mantra meditation, and non-meditation mental calculation condition. Intermediate Yoga meditators showed greater source activity in low frequencies (particularly theta and alpha1) during mental calculation, body-steadiness and mantra meditation. A similar spatial pattern of significant differences was found in all conditions but the number of significant voxels was double during body-steadiness and mantra meditation than in the non-meditation (calculation) condition. These differences were greatest in right (R) superior frontal and R precentral gyri and extended back to include the R parietal and occipital lobes. Advanced Yoga meditators showed greater activity in high frequencies (beta and especially gamma) in all conditions but greatly expanded during meditation practice. Across all conditions (meditation and non-meditation) differences were greatest in the same regions: R insula, R inferior frontal gyrus and R anterior temporal lobe. Distinct R core networks were identified in alpha1 (8–10 Hz) and gamma (25–42 Hz) bands, respectively. The voxels recruited to these networks greatly expanded during meditation practice to include homologous regions of the left hemisphere. Functional interpretation parallels traditionally described stages of development in Yoga proficiency. PMID:24959124

  16. Reduced supplementation frequency increased insulin-like growth factor 1 in beef steers fed medium quality hay and supplemented with a soybean hull and corn gluten feed blend.

    PubMed

    Drewnoski, M E; Huntington, G B; Poore, M H

    2014-06-01

    Reducing supplementation frequency in calf growing programs can reduce labor and equipment operation costs. However, little is understood about the metabolic response of ruminants to large fluctuations in nutrient intake. Eighteen Angus or Angus × Simmental cross steers (287 ± 20 kg and 310 ± 3.6 d of age) were individually fed 1 of 3 dietary treatments using Calan gates. Dietary treatments consisted of ad libitum hay and no supplement (NS), ad libitum hay and 1% BW (as-fed basis) of supplement daily (DS), or ad libitum hay and 2% BW (as-fed basis) of supplement every other day (SA). The supplement was 90% DM and contained (as-fed basis) 47% corn gluten feed, 47% soybean hulls, 2% feed grade limestone, and 4% molasses. Hay intake and ADG was measured over a 52-d period. Steers were then moved to individual tie stalls. Steers were fed at 0800 h and blood samples were collected every hour from 0600 to 1400 h and at 1800, 2200, and 0200 h over a 2-d period. Gains were increased (P < 0.01) by supplementation but did not differ (P = 0.68) due to supplementation frequency. Average daily gain was 0.45, 0.90, and 0.87 kg ·hd(-1)·d(-1) (SEM ± 0.05) for steers NS, DS, and SA, respectively. Across the 2-d supplementation cycle area under the concentration time curve (AUC) for plasma glucose was increased (P < 0.01) by supplementation but did not differ (P = 0.41) due to supplementation frequency. The AUC for plasma insulin was increased by supplementation (P < 0.01) but did not differ (P = 0.67) due to supplementation frequency. Plasma IGF-1 was increased (P = 0.01) by supplementation and was greater (P = 0.04) for steers supplemented SA than DS. Gains of steers supplemented with a soybean hull and corn gluten feed blend on alternate days did not differ from those supplemented daily suggesting the steers were able to efficiently utilize large boluses of nutrients fed every other day. The effect of less frequent supplementation on IGF-1 deserves further examination as

  17. Wave Activity (Planetary, Tidal) throughout the Middle Atmoshere (25-100 km) over the CUJO Network: Satellite and Medium Frequency (MF) Radar Observations

    NASA Astrophysics Data System (ADS)

    Manson, A.; Meek, C.; Chshyolkova, T.; Avery, S.; Thorsen, D.; MacDougall, J.; Hocking, W.; Murayama, Y.; Igarashi, K.

    Planetary and tidal wave activity in the mesosphere-lower thermosphere (MLT), and assessment of wave activity sources in the lower atmosphere, are studied using combinations of ground based (GB) and satellite instruments (2000-2002). CUJO (Canada U.S. Japan Opportunity) comprises MF radar (MFR) systems at London (43°N, 81°W), Platteville (40°N, 105°W), Saskatoon (52°N, 107°W), Wakkanai (45°N, 142°E) and Yamagawa (31°N, 131°E). It offers a significant mid-latitude 7,000 km longitudinal sector in the North American-Pacific region, and a useful range of latitudes (12-14°) at two longitudes. CUJO provides winds and tides 70-100km. Satellite data include the daily values of the total ozone column measured by the Earth Probe (EP) TOMS (Total Ozone Mapping Spectrometer) and provides a measure of tropopause-lower stratospheric planetary wave activity as well as ozone variability. The so-called UKMO data (an assimilation system) are used for correlative purposes with the TOMS data. Climatologies of ozone and winds/tides involving frequency versus time (wavelet) contour plots for periods from 2-d to 30-d and the interval from mid 2000 to 2002, show that the changes with altitude, longitude and latitude are very significant and distinctive. Geometric-mean wavelets for the region of the 40°N MFRs demonstrate occasions during the autumn, winter and spring months when there are similarities in the spectral features of the lower atmosphere and at mesopause (85km) heights. Both direct planetary wave (PW) propagation into the MLT, non-linear PW-tide interactions, and disturbances in MLT tides associated with fluctuations in the ozone forcing are considered to be possible coupling processes. The complex horizontal wave numbers of the longer period oscillations are provided in frequency contour plots for the TOMS and UKMO data to demonstrate the differences between lower atmospheric and MLT wave motions and their directions of propagation.

  18. An eigenfunction expansion for low-frequency acoustic propagation in a downward-refracting stratified medium over a complex impedance plane

    NASA Astrophysics Data System (ADS)

    Waxler, Roger

    2002-05-01

    The well-known eigenfunction expansions associated with self-adjoint operators cannot be used to describe sound propagation over a complex impedance plane since, if the impedance has a real part, the resulting impedance boundary condition is not self-adjoint. Instead, a less widely known eigenfunction expansion associated with non-self-adjoint operators can be used. This eigenfunction expansion is applied to a vertically stratified model for downward refraction in the nighttime boundary layer. As in the self-adjoint case the propagation separates into a ducted part, expressed as a sum of modes which decay exponentially with height, and an upwardly propagating part, expressed as an integral over modes which are asymptotically (with height) plane waves. The eigenvalues associated with the ducted modes are complex, the imaginary parts being related to the acoustic attenuation. An efficient method for finding the complex eigenvalues is introduced from which a physically intuitive form of the attenuation coefficients is obtained. For low-frequency propagation (100 Hz or less) the number of modes is small, making this a simple way to model the ducted part of the propagation.

  19. POLARIZED LINE TRANSFER WITH F-STATE INTERFERENCE IN A NON-MAGNETIC MEDIUM: PARTIAL FREQUENCY REDISTRIBUTION EFFECTS IN THE COLLISIONLESS REGIME

    SciTech Connect

    Smitha, H. N.; Sowmya, K.; Nagendra, K. N.; Sampoorna, M.; Stenflo, J. O. E-mail: ksowmya@iiap.res.in E-mail: sampoorna@iiap.res.in

    2012-10-20

    Quantum interference phenomena manifest themselves in several ways in the polarized solar spectrum formed due to coherent scattering processes. One such effect arises due to interference between the fine structure (J) states giving rise to multiplets. Another effect is that which arises due to interference between the hyperfine structure (F) states. We extend the redistribution matrix derived for the J-state interference to the case of F-state interference. We then incorporate it into the polarized radiative transfer equation and solve it for isothermal constant property slab atmospheres. The relevant transfer equation is solved using a polarized approximate lambda iteration (PALI) technique based on operator perturbation. An alternative method derived from the Neumann series expansion is also proposed and is found to be relatively more efficient than the PALI method. The effects of partial frequency redistribution and the F-state interference on the shapes of the linearly polarized Stokes profiles are discussed. The emergent Stokes profiles are computed for hypothetical line transitions arising due to hyperfine structure splitting of the upper J = 3/2 and lower J = 1/2 levels of a two-level atom model with nuclear spin I{sub s} = 3/2. We confine our attention to the non-magnetic scattering in the collisionless regime.

  20. SNS Medium Beta Cryomodule Performance

    SciTech Connect

    Isidoro Campisi; Edward Daly; G. Davis; Jean Delayen; Christiana Grenoble; John Hogan; Lawrence King; Thomas Powers; Joseph Preble; Mircea Stirbet; Haipeng Wang; Mark Wiseman

    2003-09-01

    Thomas Jefferson National Accelerating Facility (Jefferson Lab) is producing 24 Superconducting Radio Frequency (SRF) cryomodules for the Spallation Neutron Source (SNS) cold linac. This includes one medium-beta (0.61) prototype, 11 medium-beta production, and 12 high-beta (0.81) production cryomodules. Each of the medium-beta cryomodules is scheduled to undergo complete operational performance testing at Jefferson Laboratory before shipment to ORNL. To date, the prototype and three production models of the medium beta cryomodule have been tested. The performance results of the tested cryomodules will be discussed.

  1. A Repeat Look at Repeating Patterns

    ERIC Educational Resources Information Center

    Markworth, Kimberly A.

    2016-01-01

    A "repeating pattern" is a cyclical repetition of an identifiable core. Children in the primary grades usually begin pattern work with fairly simple patterns, such as AB, ABC, or ABB patterns. The unique letters represent unique elements, whereas the sequence of letters represents the core that is repeated. Based on color, shape,…

  2. The new Adelaide medium frequency Doppler radar

    NASA Astrophysics Data System (ADS)

    Reid, I. M.; Vandepeer, B. G. W.; Dillon, S.; Fuller, B.

    1993-08-01

    The Buckland Park Aerial Array (35 deg S, 138 deg E) is situated about 40 km north of Adelaide on a flat coastal plain. It was designed by Basil Briggs and Graham Elford, and constructed between 1965 and 1968. The first results were published in the late 1960's. Some aspects of the history of the array are described in Briggs (1993). A new MF Doppler Radar utilizing the array has been developed. This paper describes some of the technical details of this new facility.

  3. Lambda Exonuclease Digestion of CGG Trinucleotide Repeats

    PubMed Central

    Conroy, R.S.; Koretsky, A.P.; Moreland, J.

    2011-01-01

    Fragile X syndrome and other triplet repeat diseases are characterized by an elongation of a repeating DNA triplet. The ensemble-averaged lambda exonuclease digestion rate of different substrates, including one with an elongated FMR1 gene containing 120 CGG repeats, was measured using absorption and fluorescence spectroscopy. Using magnetic tweezers sequence-dependent digestion rates and pausing was measured for individual lambda exonucleases. Within the triplet repeats a lower average and narrower distribution of rates and a higher frequency of pausing was observed. PMID:19562332

  4. Unfolding a linker between helical repeats.

    PubMed

    Ortiz, Vanessa; Nielsen, Steven O; Klein, Michael L; Discher, Dennis E

    2005-06-10

    In many multi-repeat proteins, linkers between repeats have little secondary structure and place few constraints on folding or unfolding. However, the large family of spectrin-like proteins, including alpha-actinin, spectrin, and dystrophin, share three-helix bundle, spectrin repeats that appear in crystal structures to be linked by long helices. All of these proteins are regularly subjected to mechanical stress. Recent single molecule atomic force microscopy (AFM) experiments demonstrate not only forced unfolding but also simultaneous unfolding of tandem repeats at finite frequency, which suggests that the contiguous helix between spectrin repeats can propagate a cooperative helix-to-coil transition. Here, we address what happens atomistically to the linker under stress by steered molecular dynamics simulations of tandem spectrin repeats in explicit water. The results for alpha-actinin repeats reveal rate-dependent pathways, with one pathway showing that the linker between repeats unfolds, which may explain the single-repeat unfolding pathway observed in AFM experiments. A second pathway preserves the structural integrity of the linker, which explains the tandem-repeat unfolding event. Unfolding of the linker begins with a splay distortion of proximal loops away from hydrophobic contacts with the linker. This is followed by linker destabilization and unwinding with increased hydration of the backbone. The end result is an unfolded helix that mechanically decouples tandem repeats. Molecularly detailed insights obtained here aid in understanding the mechanical coupling of domain stability in spectrin family proteins.

  5. Validation of soy protein estimates from a food-frequency questionnaire with repeated 24-h recalls and isoflavonoid excretion in overnight urine in a Western population with a wide range of soy intakes2

    PubMed Central

    Jaceldo-Siegl, Karen; Fraser, Gary E; Chan, Jacqueline; Franke, Adrian; Sabaté, Joan

    2013-01-01

    Background Evidence of the benefits of soy on cancer risk in Western populations is inconsistent, in part because of the low intake of soy in these groups. Objective We assessed the validity of soy protein estimates from food-frequency questionnaires (FFQs) in a sample of Adventist Health Study-2 participants with a wide range of soy intakes. Design We obtained dietary intake data from 100 men and women (43 blacks and 57 nonblacks). Soy protein estimates from FFQs were compared against repeated 24-h recalls and urinary excretion of daidzein, genistein, total isoflavonoids (TIFLs), and equol (measured by HPLC/photodiode array/mass spectrometry) as reference criteria. We calculated Pearson and Spearman correlation coefficients (with 95% CIs) for FFQ–24-h recall, 24 h-recall–urinary excretion, and FFQ–urinary excretion pairs. Results Among soy users, mean (± SD) soy protein values were 12.12 ± 10.80 g/d from 24-h recalls and 9.43 ± 7.83 g/d from FFQs. The unattenuated correlation (95% CI) between soy protein estimates from 24-h recalls and FFQs was 0.57 (0.32, 0.75). Correlation coefficients between soy protein intake from 24-h recalls and urinary isoflavonoids were 0.72 (0.43, 0.96) for daidzein, 0.67 (0.43, 0.91) for genistein, and 0.72 (0.47, 0.98) for TIFLs. Between FFQs and urinary excretion, these were 0.50 (0.32, 0.65), 0.48 (0.29, 0.61), and 0.50 (0.32, 0.64) for daidzein, genistein, and TIFLs, respectively. Conclusions Soy protein estimates from questionnaire were significantly correlated with soy protein from 24-h recalls and urinary excretion of daidzein, genistein, and TIFLs. The Adventist Health Study-2 FFQ is a valid instrument for assessing soy protein in a population with a wide range of soy intakes. PMID:18469267

  6. Generation of Coherent Light by a Moving Medium

    NASA Astrophysics Data System (ADS)

    Svidzinsky, Anatoly A.; Li, Fu; Zhang, Xiwen

    2017-03-01

    We show that steady nonuniform motion of a medium through an optical resonator can yield light amplification at the resonator frequency. High gain can be achieved if at the generated frequency the medium refractive index is close to zero or the medium has a very strong frequency dispersion. We also discuss an analogy between light amplification by a moving medium and the generation of sound waves when gas flows along a tube with acoustically closed-open boundaries.

  7. Towards Quantum Repeaters

    NASA Astrophysics Data System (ADS)

    Gisin, Nicolas

    2009-05-01

    The ultimate limit of direct point to point quantum key distribution is around 300-500 km. Longer distances fiber-based quantum communication will require both high-fidelity entanglement swapping and multi-mode quantum memories. A new protocol for an efficient multimode quantum memory based on atomic ensembles has been developed and demonstrated. The rare-earth ions ensemble is ``frozen'' in a crystal inside a cryostat. The protocol, named AFC (Atomic Frequency Comb) is inspired from photon echoes, but avoids any control light pulse after the single-photon(s) is (are) stored in the medium, thus avoiding any noise due to fluorescence. First results on the new protocol for quantum memories in Nd:YVO4 doped crystals demonstrate a quantum light-matter interface at the single-photon level. The coherence of the re-emitted photons is investigated in an interference experiment showing net visibilities above 95%. Further results in Nd:YSO (Geneva), Tm:YAG (Paris) and Pr:YSO (Lund) shall also be presented. Many hundreds of km long quantum communication is a long term objective. Many of the necessary building blocks have been demonstrated, but usually in independent experiments and with insufficient fidelities and specifications to meet the goal. Still, today's the roadmap is relatively clear and a lot of interesting physics shall be found along the journey.

  8. Impedance bacteriometry: medium and interface contributions during bacterial growth.

    PubMed

    Felice, C J; Valentinuzzi, M E; Vercellone, M I; Madrid, R E

    1992-12-01

    We measured impedance in a cell containing culture broth inoculated with E. coli, before and during bacterial growth. The electrode interface impedance components (Ri, Xi) and the culture medium component Rm were separated by making use of the Warburg's model frequency dependent properties. Measurements were carried out at different frequencies (from 18 Hz to 18 kHz) with a constant current impedance bridge as growth proceeded. It was found that: Growth curves for Ri and Xi showed a similar temporal pattern within the frequency range of 18-100 Hz. Dispersion was not observed in Rm, meaning that the same growth response was obtained within the 18-18,000 Hz range. At low frequency, the resistive and capacitive reactive components, or Rb and Xb, respectively, were directly measured, where Rb = (2.Ri + Rm) and Xb = 2.Xi and, at high frequency (above 5 kHz), Rm was obtained (for Zi is negligible). Thus, Ri was easily discriminated from Rm by simple arithmetic: Ri = [Rb (low f) - Rb (high f)]/2. In four experiments, the maximum spread of Xi, Ri, and Rm was smaller than 5%, indicating good repeatability. There is potential new information in dissecting out the growth curve in three separate component curves.

  9. Repeat Concussions in the National Football League

    PubMed Central

    Casson, Ira R.; Viano, David C.; Powell, John W.; Pellman, Elliot J.

    2011-01-01

    Background: Repeat concussion is an important issue in the National Football League (NFL). An initial description of repeat injuries was published for 6 years (1996-2001). Hypothesis: The characteristics and frequency of repeat concussion in the NFL have not changed in the subsequent 6 years (2002-2007). Study Design: Case control. Methods: From 1996 to 2007, concussions were reported using a standardized form documenting signs and symptoms, loss of consciousness and medical action taken. Data on repeat concussions were analyzed for the 12 years and compared between the 2 periods. Results: In 2002-2007, 152 players had repeat concussions (vs 160 in 1996-2001); 44 had 3+ head injuries (vs 52). The positions most often associated with repeat concussion in 2002-2007 were the defensive secondary, kick unit, running back, and linebacker. The odds for repeat concussion were elevated for wide receivers, tight ends, and linebackers but lower than in the earlier period. During 2002-2007, over half of players with repeat concussion were removed from play, and fewer immediately returned (vs 1996-2001). The average duration between concussions was 1.25 years for 2002-2007 and 1.65 years for the 12-year period. Over 12 years, 7.6% of all repeat concussions occurred within 2 weeks of the prior concussion. Conclusions: The defensive secondary, kick unit, running back, and linebacker have the highest incidence of repeat concussion. During 2002-2007, more than half of players with repeat concussion were removed from play, and only a fraction immediately returned. Although concussion was managed more conservatively by team physicians in the recent 6 years, repeat concussions occurred at similar rates during both periods. PMID:23015986

  10. Repeat concussions in the national football league.

    PubMed

    Casson, Ira R; Viano, David C; Powell, John W; Pellman, Elliot J

    2011-01-01

    Repeat concussion is an important issue in the National Football League (NFL). An initial description of repeat injuries was published for 6 years (1996-2001). The characteristics and frequency of repeat concussion in the NFL have not changed in the subsequent 6 years (2002-2007). Case control. From 1996 to 2007, concussions were reported using a standardized form documenting signs and symptoms, loss of consciousness and medical action taken. Data on repeat concussions were analyzed for the 12 years and compared between the 2 periods. In 2002-2007, 152 players had repeat concussions (vs 160 in 1996-2001); 44 had 3+ head injuries (vs 52). The positions most often associated with repeat concussion in 2002-2007 were the defensive secondary, kick unit, running back, and linebacker. The odds for repeat concussion were elevated for wide receivers, tight ends, and linebackers but lower than in the earlier period. During 2002-2007, over half of players with repeat concussion were removed from play, and fewer immediately returned (vs 1996-2001). The average duration between concussions was 1.25 years for 2002-2007 and 1.65 years for the 12-year period. Over 12 years, 7.6% of all repeat concussions occurred within 2 weeks of the prior concussion. The defensive secondary, kick unit, running back, and linebacker have the highest incidence of repeat concussion. During 2002-2007, more than half of players with repeat concussion were removed from play, and only a fraction immediately returned. Although concussion was managed more conservatively by team physicians in the recent 6 years, repeat concussions occurred at similar rates during both periods.

  11. Identifying tandem Ankyrin repeats in protein structures.

    PubMed

    Chakrabarty, Broto; Parekh, Nita

    2014-12-30

    Tandem repetition of structural motifs in proteins is frequently observed across all forms of life. Topology of repeating unit and its frequency of occurrence are associated to a wide range of structural and functional roles in diverse proteins, and defects in repeat proteins have been associated with a number of diseases. It is thus desirable to accurately identify specific repeat type and its copy number. Weak evolutionary constraints on repeat units and insertions/deletions between them make their identification difficult at the sequence level and structure based approaches are desired. The proposed graph spectral approach is based on protein structure represented as a graph for detecting one of the most frequently observed structural repeats, Ankyrin repeat. It has been shown in a large number of studies that 3-dimensional topology of a protein structure is well captured by a graph, making it possible to analyze a complex protein structure as a mathematical entity. In this study we show that eigen spectra profile of a protein structure graph exhibits a unique repetitive profile for contiguous repeating units enabling the detection of the repeat region and the repeat type. The proposed approach uses a non-redundant set of 58 Ankyrin proteins to define rules for the detection of Ankyrin repeat motifs. It is evaluated on a set of 370 proteins comprising 125 known Ankyrin proteins and remaining non-solenoid proteins and the prediction compared with UniProt annotation, sequence-based approach, RADAR, and structure-based approach, ConSole. To show the efficacy of the approach, we analyzed the complete PDB structural database and identified 641 previously unrecognized Ankyrin repeat proteins. We observe a unique eigen spectra profile for different repeat types and show that the method can be easily extended to detect other repeat types. It is implemented as a web server, AnkPred. It is freely available at 'bioinf.iiit.ac.in/AnkPred'. AnkPred provides an elegant and

  12. [Workplace Health Promotion in Small, Medium-Sized and Large Enterprises of the Health-Care Sector - Frequency, Reasons for the Company Management to Take Action and Barriers to Implementation].

    PubMed

    Schaefer, E; Drexler, H; Kiesel, J

    2016-03-01

    The aim of this study was to gain insight into worksite health promotion in small and medium-sized companies compared to large concerns in Middle Franconia. Action in worksite health promotion, obstacles and demand for networks for workplace health promotion were determined. A standardised telephone interview served for collecting data for this cross-sectional study. The interviewee was always the manager or their proxy. 106 companies were contacted. The results of this study were analysed via qualitative and quantitative methods in SPSS(®) 20. It was possible to reach and interview 80 companies, a return rate of 75.5%. More than half the companies (68.8%) implemented at least one activity for worksite health promotion, especially ergonomic measures and measures to promote physical activity. Taking the size of the company into consideration when analysing the results, previous study results are confirmed. With an increasing size of the company, the relative frequency of measures for workplace health promotion rises. The motivation for worksite health promotion ranges from keeping the employees healthy (38.2%) to worksite health promotion as part of the business culture (9.1%). 81.1% of the companies consider their activity in worksite health promotion to be successful. Furthermore, 80.0% of the firms that implemented worksite health promotion were supported by a partner like a health insurance (43.2%). Those companies that did not implement any activities for worksite health promotion, state as a prime reason that they did not think about it as yet (44.0%). Besides, 44.0% of the companies without any worksite health promotion would like to implement measures. 65.5% of the companies that already took action in worksite health promotion and 56.0% of the companies that did not would like to cooperate with other firms in a network for workplace health promotion. Mutual exchange is the most important factor for them. The results of this study show that almost half of

  13. Frequency Tunable Wire Lasers

    NASA Technical Reports Server (NTRS)

    Hu, Qing (Inventor)

    2013-01-01

    The present invention provides frequency tunable solid-state radiation-generating devices, such as lasers and amplifiers, whose active medium has a size in at least one transverse dimension (e.g., its width) that is much smaller than the wavelength of radiation generated and/or amplified within the active medium. In such devices, a fraction of radiation travels as an evanescent propagating mode outside the active medium. It has been discovered that in such devices the radiation frequency can be tuned by the interaction of a tuning mechanism with the propagating evanescent mode.

  14. The frequency of clinical pregnancy and implantation rate after cultivation of embryos in a medium with granulocyte macrophage colony-stimulating factor (GM-CSF) in patients with preceding failed attempts of ART.

    PubMed

    Tevkin, S; Lokshin, V; Shishimorova, M; Polumiskov, V

    2014-10-01

    The application in IVF practice of modern techniques can improve positive outcome of each cycle in the assisted reproductive technology (ART) programs and the effectiveness of treatment as a whole. There are embryos in the female reproductive tract in physiological medium which contain various cytokines and growth factors. It plays an important role in the regulation of normal embryonic development, improve implantation and subsequently optimizing the development of the fetus and the placenta. Granulocyte macrophage colony-stimulating factor (GM-CSF is one of the cytokines playing an important role in reproductive function. Addition of recombinant GM-CSF to the culture medium can makes closer human embryos culture to in vivo conditions and improve the efficacy ART cycles. The analysis of culture embryos in EmbryoGen medium has shown that fertilization rate embryo culture and transfer to patients with previous unsuccessful attempts increases clinical pregnancy rate compared to the control group 39.1 versus 27.8%, respectively. It is noted that the implantation rate (on 7 weeks' gestation) and progressive clinical pregnancy rate (on 12 weeks' gestation) were significantly higher in group embryos culture in EmbryoGen medium compared to standard combination of medium (ISM1+VA), and were 20.4 and 17.4% versus 11.6 and 9.1%, respectively.

  15. Repeating the Past

    NASA Astrophysics Data System (ADS)

    Moore, John W.

    1998-05-01

    As part of the celebration of the Journal 's 75th year, we are scanning each Journal issue from 25, 50, and 74 years ago. Many of the ideas and practices described are so similar to present-day "innovations" that George Santayana's adage (1) "Those who cannot remember the past are condemned to repeat it" comes to mind. But perhaps "condemned" is too strong - sometimes it may be valuable to repeat something that was done long ago. One example comes from the earliest days of the Division of Chemical Education and of the Journal.

  16. Effects of repeated 9 and 30-day exposure to extremely low-frequency electromagnetic fields on social recognition behavior and estrogen receptors expression in olfactory bulb of Wistar female rats.

    PubMed

    Bernal-Mondragón, C; Arriaga-Avila, V; Martínez-Abundis, E; Barrera-Mera, B; Mercado-Gómez, O; Guevara-Guzmán, R

    2017-02-01

    We investigated the short- and long-term effects of extremely low-frequency electromagnetic fields (EMF) on social recognition behavior and expression of α- and β-estrogen receptors (ER). Rats were exposed to 60-Hz electromagnetic fields for 9 or 30 days and tested for social recognition behavior. Immunohistochemistry and western blot assays were performed to evaluate α- and β-ER expression in the olfactory bulb of intact, ovariectomized (OVX), and ovariectomized+estradiol (E2) replacement (OVX+E2). Ovariectomization showed impairment of social recognition after 9 days of EMF exposure and a complete recovery after E2 replacement and so did those after 30 days. Short EMF exposure increased expression of β-ER in intact, but not in the others. Longer exposure produced a decrease in intact but an increase in OVX and OVX+E2. Our findings suggest a significant role for β-estrogen receptors and a lack of effect for α-estrogen receptors on a social recognition task. EMF: extremely low frequency electromagnetic fields; ERs: estrogen receptors; OB: olfactory bulb; OVX: ovariectomized; OVX + E2: ovariectomized + estradiol replacement; IEI: interexposure interval; β-ER: beta estrogen receptor; E2: replacement of estradiol; GAPDH: glyceraldehyde-3-phosphate dehydrogenase; WB: Western blot; PBS: phosphate-buffer saline; PB: phosphate-buffer.

  17. Slit Wheel Repeatability

    NASA Astrophysics Data System (ADS)

    DiFelice, Audrey

    2013-10-01

    Test the repeatibility of the slit wheel by taking a sequence of comparison lamp spectra with grating G230MB {2697} and the three smallest long slits {52X0.2, 52X0.1, and 52X0.05}. This is a clone of Cycle 20 Program 13140.

  18. Slit Wheel Repeatability

    NASA Astrophysics Data System (ADS)

    Long, Chris

    2011-10-01

    Test the repeatibility of the slit wheel by taking a sequence of comparison lamp spectra with grating G230MB {2697} and the three smallest long slits {52X0.2, 52X0.1, and 52X0.05}. This is a clone of Cycle 18 Program 12410.

  19. Slit Wheel Repeatability

    NASA Astrophysics Data System (ADS)

    DiFelice, Audrey

    2012-10-01

    Test the repeatibility of the slit wheel by taking a sequence of comparison lamp spectra with grating G230MB {2697} and the three smallest long slits {52X0.2, 52X0.1, and 52X0.05}. This is a clone of Cycle 19 Program 12771.

  20. Repeated Causal Decision Making

    ERIC Educational Resources Information Center

    Hagmayer, York; Meder, Bjorn

    2013-01-01

    Many of our decisions refer to actions that have a causal impact on the external environment. Such actions may not only allow for the mere learning of expected values or utilities but also for acquiring knowledge about the causal structure of our world. We used a repeated decision-making paradigm to examine what kind of knowledge people acquire in…

  1. Acoustic resonance frequency locked photoacoustic spectrometer

    DOEpatents

    Pilgrim, Jeffrey S.; Bomse, David S.; Silver, Joel A.

    2003-09-09

    A photoacoustic spectroscopy method and apparatus for maintaining an acoustic source frequency on a sample cell resonance frequency comprising: providing an acoustic source to the sample cell, the acoustic source having a source frequency; repeatedly and continuously sweeping the source frequency across the resonance frequency at a sweep rate; and employing an odd-harmonic of the source frequency sweep rate to maintain the source frequency sweep centered on the resonance frequency.

  2. Duct Leakage Repeatability Testing

    SciTech Connect

    Walker, Iain; Sherman, Max

    2014-01-01

    Duct leakage often needs to be measured to demonstrate compliance with requirements or to determine energy or Indoor Air Quality (IAQ) impacts. Testing is often done using standards such as ASTM E1554 (ASTM 2013) or California Title 24 (California Energy Commission 2013 & 2013b), but there are several choices of methods available within the accepted standards. Determining which method to use or not use requires an evaluation of those methods in the context of the particular needs. Three factors that are important considerations are the cost of the measurement, the accuracy of the measurement and the repeatability of the measurement. The purpose of this report is to evaluate the repeatability of the three most significant measurement techniques using data from the literature and recently obtained field data. We will also briefly discuss the first two factors. The main question to be answered by this study is to determine if differences in the repeatability of these tests methods is sufficient to indicate that any of these methods is so poor that it should be excluded from consideration as an allowed procedure in codes and standards.

  3. Accumulate repeat accumulate codes

    NASA Technical Reports Server (NTRS)

    Abbasfar, Aliazam; Divsalar, Dariush; Yao, Kung

    2004-01-01

    In this paper we propose an innovative channel coding scheme called 'Accumulate Repeat Accumulate codes' (ARA). This class of codes can be viewed as serial turbo-like codes, or as a subclass of Low Density Parity Check (LDPC) codes, thus belief propagation can be used for iterative decoding of ARA codes on a graph. The structure of encoder for this class can be viewed as precoded Repeat Accumulate (RA) code or as precoded Irregular Repeat Accumulate (IRA) code, where simply an accumulator is chosen as a precoder. Thus ARA codes have simple, and very fast encoder structure when they representing LDPC codes. Based on density evolution for LDPC codes through some examples for ARA codes, we show that for maximum variable node degree 5 a minimum bit SNR as low as 0.08 dB from channel capacity for rate 1/2 can be achieved as the block size goes to infinity. Thus based on fixed low maximum variable node degree, its threshold outperforms not only the RA and IRA codes but also the best known LDPC codes with the dame maximum node degree. Furthermore by puncturing the accumulators any desired high rate codes close to code rate 1 can be obtained with thresholds that stay close to the channel capacity thresholds uniformly. Iterative decoding simulation results are provided. The ARA codes also have projected graph or protograph representation that allows for high speed decoder implementation.

  4. Some characteristics of repeated sickness absence

    PubMed Central

    Ferguson, David

    1972-01-01

    Ferguson, D. (1972).Brit. J. industr. Med.,29, 420-431. Some characteristics of repeated sickness absence. Several studies have shown that frequency of absence attributed to sickness is not distributed randomly but tends to follow the negative binomial distribution, and this has been taken to support the concept of `proneness' to such absence. Thus, the distribution of sickness absence resembles that of minor injury at work demonstrated over 50 years ago. Because the investigation of proneness to absence does not appear to have been reported by others in Australia, the opportunity was taken, during a wider study of health among telegraphists in a large communications undertaking, to analyse some characteristics of repeated sickness absence. The records of medically certified and uncertified sickness absence of all 769 telegraphists continuously employed in all State capitals over a two-and-a-half-year period were compared with those of 411 clerks and 415 mechanics and, in Sydney, 380 mail sorters and 80 of their supervisors. All telegraphists in Sydney, Melbourne, and Brisbane, and all mail sorters in Sydney, who were available and willing were later medically examined. From their absence pattern repeaters (employees who had had eight or more certified absences in two and a half years) were separated into three types based on a presumptive origin in chance, recurrent disease and symptomatic non-specific disorder. The observed distribution of individual frequency of certified absence over the full two-and-a-half-year period of study followed that expected from the univariate negative binomial, using maximum likelihood estimators, rather than the poisson distribution, in three of the four occupational groups in Sydney. Limited correlational and bivariate analysis supported the interpretation of proneness ascribed to the univariate fit. In the two groups studied, frequency of uncertified absence could not be fitted by the negative binomial, although the numbers of

  5. Repeated administration of imipramine modifies GABAergic transmission in rat frontal cortex.

    PubMed

    Wabno, Joanna; Hess, Grzegorz

    2013-05-01

    Alterations in the functions of brain gamma-aminobutyric acid (GABA) inhibitory system and a distortion in the balance between excitatory and inhibitory synaptic transmission have been hypothesized to be possible causes of mood disorders. Experimental evidence points to modifications of GABAergic transmission as a result of prolonged treatment with antidepressant drugs, however, the influence of the tricyclic antidepressant imipramine on inhibitory synaptic transmission in the rat cerebral cortex has not yet been investigated. Therefore, in the present study the effects of single and repeated administration of imipramine were evaluated ex vivo in slices of the rat frontal cortex using electrophysiological approach. In slices prepared 2 days after the last drug administration from animals receiving imipramine for 14 days (dose 10 mg/kg p.o., twice daily) the mean frequency of spontaneous inhibitory postsynaptic currents (sIPSCs) recorded from layer II/III pyramidal neurons was decreased, while the mean amplitude of sIPSCs was increased. These effects were absent in slices obtained from rats which received imipramine once. Application of N,N'-dibenzhydrylethane-1,2-diamine dihydrochloride (AMN 082), a selective mGluR7 allosteric agonist, to the slice incubation medium resulted in a decrease in the mean frequency of sIPSCs in preparations obtained from repeated imipramine-treated animals, in contrast to slices originating from control rats where no AMN 082-induced effects were observed. Repeated imipramine treatment reduced protein density levels of the three tested GABAA receptor subunits: α 1, β 2 and γ 2. These data indicate that repeated treatment of normal rats with imipramine results in a modification of the release mechanism of GABA from presynaptic terminals and its modulation by mGluR7 receptors as well as in an alteration in GABAA receptor subunit protein levels in the rat cerebral cortex.

  6. Repeatability of Cryogenic Multilayer Insulation

    NASA Technical Reports Server (NTRS)

    Johnson, W. L.; Vanderlaan, M.; Wood, J. J.; Rhys, N. O.; Guo, W.; Van Sciver, S.; Chato, D. J.

    2017-01-01

    Due to the variety of requirements across aerospace platforms, and one off projects, the repeatability of cryogenic multilayer insulation has never been fully established. The objective of this test program is to provide a more basic understanding of the thermal performance repeatability of MLI systems that are applicable to large scale tanks. There are several different types of repeatability that can be accounted for: these include repeatability between multiple identical blankets, repeatability of installation of the same blanket, and repeatability of a test apparatus. The focus of the work in this report is on the first two types of repeatability. Statistically, repeatability can mean many different things. In simplest form, it refers to the range of performance that a population exhibits and the average of the population. However, as more and more identical components are made (i.e. the population of concern grows), the simple range morphs into a standard deviation from an average performance. Initial repeatability testing on MLI blankets has been completed at Florida State University. Repeatability of five GRC provided coupons with 25 layers was shown to be +/- 8.4 whereas repeatability of repeatedly installing a single coupon was shown to be +/- 8.0. A second group of 10 coupons have been fabricated by Yetispace and tested by Florida State University, through the first 4 tests, the repeatability has been shown to be +/- 16. Based on detailed statistical analysis, the data has been shown to be statistically significant.

  7. Coexistence of 3G repeaters with LTE base stations.

    PubMed

    Yeo, Woon-Young; Lee, Sang-Min; Hwang, Gyung-Ho; Kim, Jae-Hoon

    2013-01-01

    Repeaters have been an attractive solution for mobile operators to upgrade their wireless networks at low cost and to extend network coverage effectively. Since the first LTE commercial deployment in 2009, many mobile operators have launched LTE networks by upgrading their 3G and legacy networks. Because all 3G frequency bands are shared with the frequency bands for LTE deployment and 3G mobile operators have an enormous number of repeaters, reusing 3G repeaters in LTE networks is definitely a practical and cost-efficient solution. However, 3G repeaters usually do not support spatial multiplexing with multiple antennas, and thus it is difficult to reuse them directly in LTE networks. In order to support spatial multiplexing of LTE, the role of 3G repeaters should be replaced with small LTE base stations or MIMO-capable repeaters. In this paper, a repeater network is proposed to reuse 3G repeaters in LTE deployment while still supporting multilayer transmission of LTE. Interestingly, the proposed network has a higher cluster throughput than an LTE network with MIMO-capable repeaters.

  8. Coexistence of 3G Repeaters with LTE Base Stations

    PubMed Central

    Yeo, Woon-Young

    2013-01-01

    Repeaters have been an attractive solution for mobile operators to upgrade their wireless networks at low cost and to extend network coverage effectively. Since the first LTE commercial deployment in 2009, many mobile operators have launched LTE networks by upgrading their 3G and legacy networks. Because all 3G frequency bands are shared with the frequency bands for LTE deployment and 3G mobile operators have an enormous number of repeaters, reusing 3G repeaters in LTE networks is definitely a practical and cost-efficient solution. However, 3G repeaters usually do not support spatial multiplexing with multiple antennas, and thus it is difficult to reuse them directly in LTE networks. In order to support spatial multiplexing of LTE, the role of 3G repeaters should be replaced with small LTE base stations or MIMO-capable repeaters. In this paper, a repeater network is proposed to reuse 3G repeaters in LTE deployment while still supporting multilayer transmission of LTE. Interestingly, the proposed network has a higher cluster throughput than an LTE network with MIMO-capable repeaters. PMID:24459420

  9. Duct Leakage Repeatability Testing

    SciTech Connect

    Walker, Iain; Sherman, Max

    2014-08-01

    The purpose of this report is to evaluate the repeatability of the three most significant measurement techniques for duct leakage using data from the literature and recently obtained field data. We will also briefly discuss the first two factors. The main question to be answered by this study is to determine if differences in the repeatability of these tests methods is sufficient to indicate that any of these methods is so poor that it should be excluded from consideration as an allowed procedure in codes and standards. The three duct leak measurement methods assessed in this report are the two duct pressurization methods that are commonly used by many practitioners and the DeltaQ technique. These are methods B, C and A, respectively of the ASTM E1554 standard. Although it would be useful to evaluate other duct leak test methods, this study focused on those test methods that are commonly used and are required in various test standards, such as BPI (2010), RESNET (2014), ASHRAE 62.2 (2013), California Title 24 (CEC 2012), DOE Weatherization and many other energy efficiency programs.

  10. Survey of simple sequence repeats in woodland strawberry (Fragaria vesca).

    PubMed

    Guan, L; Huang, J F; Feng, G Q; Wang, X W; Wang, Y; Chen, B Y; Qiao, Y S

    2013-07-30

    The use of simple sequence repeats (SSRs), or microsatellites, as genetic markers has become popular due to their abundance and variation in length among individuals. In this study, we investigated linkage groups (LGs) in the woodland strawberry (Fragaria vesca) and demonstrated variation in the abundances, densities, and relative densities of mononucleotide, dinucleotide, and trinucleotide repeats. Mononucleotide, dinucleotide, and trinucleotide repeats were more common than longer repeats in all LGs examined. Perfect SSRs were the predominant SSR type found and their abundance was extremely stable among LGs and chloroplasts. Abundances of mononucleotide, dinucleotide, and trinucleotide repeats were positively correlated with LG size, whereas those of tetranucleotide and hexanucleotide SSRs were not. Generally, in each LG, the abundance, relative abundance, relative density, and the proportion of each unique SSR all declined rapidly as the repeated unit increased. Furthermore, the lengths and frequencies of SSRs varied among different LGs.

  11. CBI: Systems or Medium?

    ERIC Educational Resources Information Center

    Higginbotham-Wheat, Nancy L.

    This paper addresses one area of conflict in decisionmaking in computer-based instruction (CBI) research: the relationship between the researcher's definition of CBI either as a medium or as an integrated system and the design of meaningful research questions. (A medium is defined here as a device for the delivery of instruction, while an…

  12. Repeat Customer Success in Extension

    ERIC Educational Resources Information Center

    Bess, Melissa M.; Traub, Sarah M.

    2013-01-01

    Four multi-session research-based programs were offered by two Extension specialist in one rural Missouri county. Eleven participants who came to multiple Extension programs could be called "repeat customers." Based on the total number of participants for all four programs, 25% could be deemed as repeat customers. Repeat customers had…

  13. Repeat Customer Success in Extension

    ERIC Educational Resources Information Center

    Bess, Melissa M.; Traub, Sarah M.

    2013-01-01

    Four multi-session research-based programs were offered by two Extension specialist in one rural Missouri county. Eleven participants who came to multiple Extension programs could be called "repeat customers." Based on the total number of participants for all four programs, 25% could be deemed as repeat customers. Repeat customers had…

  14. Synthetic laser medium

    DOEpatents

    Stokowski, S.E.

    1987-10-20

    A laser medium is particularly useful in high average power solid state lasers. The laser medium includes a chromium dopant and preferably neodymium ions as codopant, and is primarily a gadolinium scandium gallium garnet, or an analog thereof. Divalent cations inhibit spiral morphology as large boules from which the laser medium is derived are grown, and a source of ions convertible between a trivalent state and a tetravalent state at a low ionization energy are in the laser medium to reduce an absorption coefficient at about one micron wavelength otherwise caused by the divalent cations. These divalent cations and convertible ions are dispersed in the laser medium. Preferred convertible ions are provided from titanium or cerium sources.

  15. Synthetic laser medium

    DOEpatents

    Stokowski, Stanley E.

    1989-01-01

    A laser medium is particularly useful in high average power solid state lasers. The laser medium includes a chormium dopant and preferably neodymium ions as codopant, and is primarily a gadolinium scandium gallium garnet, or an analog thereof. Divalent cations inhibit spiral morphology as large boules from which the laser medium is derived are grown, and a source of ions convertible between a trivalent state and a tetravalent state at a low ionization energy are in the laser medium to reduce an absorption coefficient at about one micron wavelength otherwise caused by the divalent cations. These divalent cations and convertible ions are dispersed in the laser medium. Preferred convertible ions are provided from titanium or cerium sources.

  16. Dual frequency optical cavity

    DOEpatents

    George, E.V.; Schipper, J.F.

    Method and apparatus for generating two distinct laser frequencies in an optical cavity, using a T configuration laser cavity and means for intermittently increasing or decreasing the index of refraction n of an associated transmission medium in one arm of the optical cavity to enhance laser action in one arm or the second arm of the cavity.

  17. Dual frequency optical cavity

    DOEpatents

    George, E. Victor; Schipper, John F.

    1985-01-01

    Method and apparatus for generating two distinct laser frequencies in an optical cavity, using a "T" configuration laser cavity and means for intermittently increasing or decreasing the index of refraction n of an associated transmission medium in one arm of the optical cavity to enhance laser action in one arm or the second arm of the cavity.

  18. Effect of off-frequency sampling in magnetic resonance elastography.

    PubMed

    Johnson, Curtis L; Chen, Danchin D; Olivero, William C; Sutton, Bradley P; Georgiadis, John G

    2012-02-01

    In magnetic resonance elastography (MRE), shear waves at a certain frequency are encoded through bipolar gradients that switch polarity at a controlled encoding frequency and are offset in time to capture wave propagation using a controlled sampling frequency. In brain MRE, there is a possibility that the mechanical actuation frequency is different from the vibration frequency, leading to a mismatch with encoding and sampling frequencies. This mismatch can occur in brain MRE from causes both extrinsic and intrinsic to the brain, such as scanner bed vibrations or active damping in the head. The purpose of this work was to investigate how frequency mismatch can affect MRE shear stiffness measurements. Experiments were performed on a dual-medium agarose gel phantom, and the results were compared with numerical simulations to quantify these effects. It is known that off-frequency encoding alone results in a scaling of wave amplitude, and it is shown here that off-frequency sampling can result in two main effects: (1) errors in the overall shear stiffness estimate of the material on the global scale and (2) local variations appearing as stiffer and softer structures in the material. For small differences in frequency, it was found that measured global stiffness of the brain could theoretically vary by up to 12.5% relative to actual stiffness with local variations of up to 3.7% of the mean stiffness. It was demonstrated that performing MRE experiments at a frequency other than that of tissue vibration can lead to artifacts in the MRE stiffness images, and this mismatch could explain some of the large-scale scatter of stiffness data or lack of repeatability reported in the brain MRE literature. Copyright © 2012 Elsevier Inc. All rights reserved.

  19. Sequences flanking the repeat arrays of human minisatellites: association with tandem and dispersed repeat elements.

    PubMed Central

    Armour, J A; Wong, Z; Wilson, V; Royle, N J; Jeffreys, A J

    1989-01-01

    We present DNA sequences flanking cloned hypervariable human minisatellites. In addition to providing confirmatory evidence that minisatellites cluster with other tandem repeats, these flanking sequences contain a high frequency of interspersed repetitive elements. These elements include a retroviral LTR-like sequence, from which one of the minisatellites appears to have expanded, and a recently described short interspersed repeat. We present our own findings concerning this element, in particular that those examples studied do not show significant evolutionary conservation, despite suggestions that the element may have a cis-acting function. Images PMID:2762114

  20. RepeatsDB: a database of tandem repeat protein structures

    PubMed Central

    Di Domenico, Tomás; Potenza, Emilio; Walsh, Ian; Gonzalo Parra, R.; Giollo, Manuel; Minervini, Giovanni; Piovesan, Damiano; Ihsan, Awais; Ferrari, Carlo; Kajava, Andrey V.; Tosatto, Silvio C.E.

    2014-01-01

    RepeatsDB (http://repeatsdb.bio.unipd.it/) is a database of annotated tandem repeat protein structures. Tandem repeats pose a difficult problem for the analysis of protein structures, as the underlying sequence can be highly degenerate. Several repeat types haven been studied over the years, but their annotation was done in a case-by-case basis, thus making large-scale analysis difficult. We developed RepeatsDB to fill this gap. Using state-of-the-art repeat detection methods and manual curation, we systematically annotated the Protein Data Bank, predicting 10 745 repeat structures. In all, 2797 structures were classified according to a recently proposed classification schema, which was expanded to accommodate new findings. In addition, detailed annotations were performed in a subset of 321 proteins. These annotations feature information on start and end positions for the repeat regions and units. RepeatsDB is an ongoing effort to systematically classify and annotate structural protein repeats in a consistent way. It provides users with the possibility to access and download high-quality datasets either interactively or programmatically through web services. PMID:24311564

  1. Frequency width of open channels in multiple scattering media.

    PubMed

    Bosch, Jeroen; Goorden, Sebastianus A; Mosk, Allard P

    2016-11-14

    We report optical measurements of the spectral width of open transmission channels in a three-dimensional diffusive medium. The light transmission through a sample is enhanced by efficiently coupling to open transmission channels using repeated digital optical phase conjugation. The spectral properties are investigated by enhancing the transmission, fixing the incident wavefront and scanning the wavelength of the laser. We measure the transmitted field to extract the field correlation function and the enhancement of the total transmission. We find that optimizing the total transmission leads to a significant increase in the frequency width of the field correlation function. Additionally we find that the enhanced transmission persists over an even larger frequency bandwidth. This result shows open channels in the diffusive regime are spectrally much wider than previous measurements in the localized regime suggest.

  2. Generation of Repeater F Waves in Healthy Subjects.

    PubMed

    Chroni, Elisabeth; Veltsista, Dimitra; Papapaulou, Chris; Trachani, Eftychia

    2017-05-01

    F waves identical in latency, size, and shape, known as repeater F waves, have been observed occasionally in normal motor conduction recordings. The purpose of this study was to examine the occurrence and characteristics of repeater F waves in healthy subjects under different testing conditions, aiming to selectively excite lower and higher threshold motor fibers. Sessions of 40 traces were recorded from the ulnar nerve in 12 volunteers, applying/using supramaximal, submaximal stimuli (intensity able to elicit 30% and 60% of the maximum compound muscle action potential amplitude), and a collision technique. Repeater F waves were identified and their numbers and relative frequency were estimated. For this purpose, a custom-designed software program was developed, to avoid misjudgments of simple visual inspection. Repeater occurrence was significantly higher using 30% submaximal intensity compared with the standard supramaximal stimulation. There was an inverse significant association between repeater index and overall F wave quantity. Repeaters' latency, amplitude, and duration measurements were within the ranges of the nonrepeaters. We herein showed that in healthy subjects the presence of repeater F waves might increase, when stimulation conditions other than standard single, supramaximal impulses were used. The frequency of repeaters was dependent on the overall F wave persistence, but there was no evidence to support a relationship with the type of motoneurons that was preferentially stimulated.

  3. ACOUSTIC WAVES GENERATED BY IMPULSIVE DISTURBANCES IN A GRAVITATIONALLY STRATIFIED MEDIUM

    SciTech Connect

    Chae, Jongchul; Goode, Philip R.

    2015-08-01

    Even though it is well-known from observations of the Sun that three-minute period chromospheric oscillations persist in the internetwork quiet regions and sunspot umbrae, until now their origin and persistence has defied clear explanation. Here we provide a clear and simple explanation for it with a demonstration of how such oscillations at the chromosphere's cutoff frequency naturally arise in a gravitationally stratified medium when it is disturbed. The largest-wavenumber vertical components of a chromospheric disturbance produce the highest-frequency wave packets, which propagate out of the disturbed region at group speeds that are close to the sound speed. Meanwhile, the smallest-wavenumber components develop into wave packets of frequencies close to the acoustic cutoff frequency that propagate at group speeds that are much lower than the sound speed. Because of their low propagation speed, these low-frequency wave packets linger in the disturbed region and nearby, and thus, are the ones that an observer would identify as the persistent, chromospheric three-minute oscillations. We emphasize that we can account for the power of the persistent chromospheric oscillations as coming from the repeated occurrence of disturbances with length scales greater than twice the pressure scale height in the upper photosphere.

  4. Learning with repeated-game strategies.

    PubMed

    Ioannou, Christos A; Romero, Julian

    2014-01-01

    We use the self-tuning Experience Weighted Attraction model with repeated-game strategies as a computer testbed to examine the relative frequency, speed of convergence and progression of a set of repeated-game strategies in four symmetric 2 × 2 games: Prisoner's Dilemma, Battle of the Sexes, Stag-Hunt, and Chicken. In the Prisoner's Dilemma game, we find that the strategy with the most occurrences is the "Grim-Trigger." In the Battle of the Sexes game, a cooperative pair that alternates between the two pure-strategy Nash equilibria emerges as the one with the most occurrences. In the Stag-Hunt and Chicken games, the "Win-Stay, Lose-Shift" and "Grim-Trigger" strategies are the ones with the most occurrences. Overall, the pairs that converged quickly ended up at the cooperative outcomes, whereas the ones that were extremely slow to reach convergence ended up at non-cooperative outcomes.

  5. Mutagenic inverted repeat assisted genome engineering (MIRAGE).

    PubMed

    Nair, Nikhil U; Zhao, Huimin

    2009-01-01

    Here we describe a one-step method to create precise modifications in the genome of Saccharomyces cerevisiae as a tool for synthetic biology, metabolic engineering, systems biology and genetic studies. Through homologous recombination, a mutagenesis cassette containing an inverted repeat of selection marker(s) is integrated into the genome. Due to its inherent instability in genomic DNA, the inverted repeat catalyzes spontaneous self-excision, resulting in precise genome modification. Since this excision occurs at very high frequencies, selection for the integration event can be followed immediately by counterselection, without the need for growth in permissive conditions. This is the first time a truly one-step method has been described for genome modification in any organism.

  6. Mutagenic inverted repeat assisted genome engineering (MIRAGE)

    PubMed Central

    Nair, Nikhil U.; Zhao, Huimin

    2009-01-01

    Here we describe a one-step method to create precise modifications in the genome of Saccharomyces cerevisiae as a tool for synthetic biology, metabolic engineering, systems biology and genetic studies. Through homologous recombination, a mutagenesis cassette containing an inverted repeat of selection marker(s) is integrated into the genome. Due to its inherent instability in genomic DNA, the inverted repeat catalyzes spontaneous self-excision, resulting in precise genome modification. Since this excision occurs at very high frequencies, selection for the integration event can be followed immediately by counterselection, without the need for growth in permissive conditions. This is the first time a truly one-step method has been described for genome modification in any organism. PMID:19050015

  7. Redshift and Blueshift are due to the Medium Composition

    NASA Astrophysics Data System (ADS)

    Smarandache, Florentin

    2017-01-01

    The redshift is the shift from shorter wavelengths towards longer wavelengths [or from higher wave frequency to lower wave frequency]. And, reciprocally, the blueshift is the shift from longer wavelengths towards shorter wavelengths [or from lower wave frequency towards higher wave frequency]. The General Theory of Relativity asserts that the redshift and blueshift are entirely due to the Doppler's Effect, which is caused by the motion of light source: if the source is moving away from the observer the frequency received is lower [redshift], but if the source is moving towards the observer the frequency received is higher [blueshift]. But Doppler's Effect itself is actually an appearance to a Subjective Observer, because the frequency is the same all over (if one considers the Absolute Observer). We believe that the redshift and blueshift are not entirely due to the Doppler's Effect, but also due (as in the light bending) to the medium composition (medium that could be formed by waves, particles, plasma, dust, gaseous, fluids, solids, etc.), to the medium density, to the medium heterogeneity, to the medium structure, and to the electromagnetic and gravitational fields contained in that medium that may interfere with the light that passes through.

  8. To Repeat or Not to Repeat a Course

    ERIC Educational Resources Information Center

    Armstrong, Michael J.; Biktimirov, Ernest N.

    2013-01-01

    The difficult transition from high school to university means that many students need to repeat (retake) 1 or more of their university courses. The authors examine the performance of students repeating first-year core courses in an undergraduate business program. They used data from university records for 116 students who took a total of 232…

  9. To Repeat or Not to Repeat a Course

    ERIC Educational Resources Information Center

    Armstrong, Michael J.; Biktimirov, Ernest N.

    2013-01-01

    The difficult transition from high school to university means that many students need to repeat (retake) 1 or more of their university courses. The authors examine the performance of students repeating first-year core courses in an undergraduate business program. They used data from university records for 116 students who took a total of 232…

  10. Study of repeater technology for advanced multifunctional communications satellites

    NASA Technical Reports Server (NTRS)

    1972-01-01

    Investigations are presented concerning design concepts and implementation approaches for the satellite communication repeater subsystems of advanced multifunctional satellites. In such systems the important concepts are the use of multiple antenna beams, repeater switching (routing), and efficient spectrum utilization through frequency reuse. An information base on these techniques was developed and tradeoff analyses were made of repeater design concepts, with the work design taken in a broad sense to include modulation beam coverage patterns. There were five major areas of study: requirements analysis and processing; study of interbeam interference in multibeam systems; characterization of multiple-beam switching repeaters; estimation of repeater weight and power for a number of alternatives; and tradeoff analyses based on these weight and power data.

  11. Composite acoustic medium with simultaneously negative density and modulus.

    PubMed

    Lee, Sam Hyeon; Park, Choon Mahn; Seo, Yong Mun; Wang, Zhi Guo; Kim, Chul Koo

    2010-02-05

    We fabricated an acoustic composite structure consisting of a periodic array of interspaced membranes and side holes. Experimental data on the transmission, effective density, and phase velocity are presented. The system exhibits two critical frequencies, omega{SH} and omega{c}. Our metamaterial is double negative and transparent for frequencies lower than omega{SH}. For the frequencies omega{SH}medium is opaque and only the density is negative. For the frequencies above omega{c}, the system is double positive and transparent. The present medium exhibits a very wide double negative spectral range that opens the possibility of the application of metamaterials for "white lights."

  12. Nifty Nines and Repeating Decimals

    ERIC Educational Resources Information Center

    Brown, Scott A.

    2016-01-01

    The traditional technique for converting repeating decimals to common fractions can be found in nearly every algebra textbook that has been published, as well as in many precalculus texts. However, students generally encounter repeating decimal numerals earlier than high school when they study rational numbers in prealgebra classes. Therefore, how…

  13. Nifty Nines and Repeating Decimals

    ERIC Educational Resources Information Center

    Brown, Scott A.

    2016-01-01

    The traditional technique for converting repeating decimals to common fractions can be found in nearly every algebra textbook that has been published, as well as in many precalculus texts. However, students generally encounter repeating decimal numerals earlier than high school when they study rational numbers in prealgebra classes. Therefore, how…

  14. Repeated Prescribed Burning in Aspen

    Treesearch

    Donald A. Perala

    1974-01-01

    Infrequent burning weather, low flammability of the aspen-hardwood association, and prolific sprouting and seeding of shrubs and hardwoods made repeated dormant season burning a poor tool to convert good site aspen to conifers. Repeat fall burns for wildlife habitat maintenance is workable if species composition changes are not important.

  15. Gravitational lensing in plasmic medium

    SciTech Connect

    Bisnovatyi-Kogan, G. S. Tsupko, O. Yu.

    2015-07-15

    The influence of plasma on different effects of gravitational lensing is reviewed. Using the Hamiltonian approach for geometrical optics in a medium in the presence of gravity, an exact formula for the photon deflection angle by a black hole (or another body with a Schwarzschild metric) embedded in plasma with a spherically symmetric density distribution is derived. The deflection angle in this case is determined by the mutual combination of different factors: gravity, dispersion, and refraction. While the effects of deflection by the gravity in vacuum and the refractive deflection in a nonhomogeneous medium are well known, the new effect is that, in the case of a homogeneous plasma, in the absence of refractive deflection, the gravitational deflection differs from the vacuum deflection and depends on the photon frequency. In the presence of a plasma nonhomogeneity, the chromatic refractive deflection also occurs, so the presence of plasma always makes gravitational lensing chromatic. In particular, the presence of plasma leads to different angular positions of the same image if it is observed at different wavelengths. It is discussed in detail how to apply the presented formulas for the calculation of the deflection angle in different situations. Gravitational lensing in plasma beyond the weak deflection approximation is also considered.

  16. Gravitational lensing in plasmic medium

    NASA Astrophysics Data System (ADS)

    Bisnovatyi-Kogan, G. S.; Tsupko, O. Yu.

    2015-07-01

    The influence of plasma on different effects of gravitational lensing is reviewed. Using the Hamiltonian approach for geometrical optics in a medium in the presence of gravity, an exact formula for the photon deflection angle by a black hole (or another body with a Schwarzschild metric) embedded in plasma with a spherically symmetric density distribution is derived. The deflection angle in this case is determined by the mutual combination of different factors: gravity, dispersion, and refraction. While the effects of deflection by the gravity in vacuum and the refractive deflection in a nonhomogeneous medium are well known, the new effect is that, in the case of a homogeneous plasma, in the absence of refractive deflection, the gravitational deflection differs from the vacuum deflection and depends on the photon frequency. In the presence of a plasma nonhomogeneity, the chromatic refractive deflection also occurs, so the presence of plasma always makes gravitational lensing chromatic. In particular, the presence of plasma leads to different angular positions of the same image if it is observed at different wavelengths. It is discussed in detail how to apply the presented formulas for the calculation of the deflection angle in different situations. Gravitational lensing in plasma beyond the weak deflection approximation is also considered.

  17. Hypermedia as medium

    NASA Technical Reports Server (NTRS)

    Dede, Christopher J.

    1990-01-01

    Claims and rebuttals that hypermedia (the associative, nonlinear interconnection of multimedia materials) is a fundamentally innovative means of thinking and communicating are described. This representational architecture has many advantages that make it a major advance over other media; however, it also has several intrinsic problems that severly limits its effectiveness as a medium. These advantages and limits in applications are discussed.

  18. Holographic recording medium

    NASA Technical Reports Server (NTRS)

    Gange, Robert Allen (Inventor)

    1977-01-01

    A holographic recording medium comprising a conductive substrate, a photoconductive layer and an electrically alterable layer of a linear, low molecular weight hydrocarbon polymer has improved fatigue resistance. An acrylic barrier layer can be interposed between the photoconductive and electrically alterable layers.

  19. Quantum repeaters: fundamental and future

    NASA Astrophysics Data System (ADS)

    Li, Yue; Hua, Sha; Liu, Yu; Ye, Jun; Zhou, Quan

    2007-04-01

    An overview of the Quantum Repeater techniques based on Entanglement Distillation and Swapping is provided. Beginning with a brief history and the basic concepts of the quantum repeaters, the article primarily focuses on the communication model based on the quantum repeater techniques, which mainly consists of two fundamental modules --- the Entanglement Distillation module and the Swapping module. The realizations of Entanglement Distillation are discussed, including the Bernstein's Procrustean method, the Entanglement Concentration and the CNOT-purification method, etc. The schemes of implementing Swapping, which include the Swapping based on Bell-state measurement and the Swapping in Cavity QED, are also introduced. Then a comparison between these realizations and evaluations on them are presented. At last, the article discusses the experimental schemes of quantum repeaters at present, documents some remaining problems and emerging trends in this field.

  20. Repeatability in redundant manipulator systems

    NASA Astrophysics Data System (ADS)

    Mukherjee, Ranjan

    1994-02-01

    Terrestrial manipulators with more DOF than the dimension of the workspace and space manipulators with as many manipulator DOF as the dimension of the workspace are both redundant systems. An interesting problem of such redundant systems has been the repeatability problem due to the presence of nonholonomic constraints. We show, contrary to the existing belief, that integrability of the nonholonomic constraints is not a necessary condition for the repeatability of the configuration variables. There exist certain trajectories in the independent configuration variable space that are like 'holonomic loops' along which the redundant manipulators exhibit repeatable motion. We present a simple method based on optimization techniques for designing repeatable trajectories for free-flying space manipulators and terrestrial manipulators under pseudoinverse control.

  1. Protein Repeats from First Principles.

    PubMed

    Turjanski, Pablo; Parra, R Gonzalo; Espada, Rocío; Becher, Verónica; Ferreiro, Diego U

    2016-04-05

    Some natural proteins display recurrent structural patterns. Despite being highly similar at the tertiary structure level, repeating patterns within a single repeat protein can be extremely variable at the sequence level. We use a mathematical definition of a repetition and investigate the occurrences of these in sequences of different protein families. We found that long stretches of perfect repetitions are infrequent in individual natural proteins, even for those which are known to fold into structures of recurrent structural motifs. We found that natural repeat proteins are indeed repetitive in their families, exhibiting abundant stretches of 6 amino acids or longer that are perfect repetitions in the reference family. We provide a systematic quantification for this repetitiveness. We show that this form of repetitiveness is not exclusive of repeat proteins, but also occurs in globular domains. A by-product of this work is a fast quantification of the likelihood of a protein to belong to a family.

  2. Protein Repeats from First Principles

    PubMed Central

    Turjanski, Pablo; Parra, R. Gonzalo; Espada, Rocío; Becher, Verónica; Ferreiro, Diego U.

    2016-01-01

    Some natural proteins display recurrent structural patterns. Despite being highly similar at the tertiary structure level, repeating patterns within a single repeat protein can be extremely variable at the sequence level. We use a mathematical definition of a repetition and investigate the occurrences of these in sequences of different protein families. We found that long stretches of perfect repetitions are infrequent in individual natural proteins, even for those which are known to fold into structures of recurrent structural motifs. We found that natural repeat proteins are indeed repetitive in their families, exhibiting abundant stretches of 6 amino acids or longer that are perfect repetitions in the reference family. We provide a systematic quantification for this repetitiveness. We show that this form of repetitiveness is not exclusive of repeat proteins, but also occurs in globular domains. A by-product of this work is a fast quantification of the likelihood of a protein to belong to a family. PMID:27044676

  3. Electromyographic analysis of repeated bouts of eccentric exercise.

    PubMed

    McHugh, M P; Connolly, D A; Eston, R G; Gartman, E J; Gleim, G W

    2001-03-01

    The repeated bout effect refers to the protective effect provided by a single bout of eccentric exercise against muscle damage from a similar subsequent bout. The aim of this study was to determine if the repeated bout was associated with an increase in motor unit activation relative to force production, an increased recruitment of slow-twitch motor units or increased motor unit synchronization. Surface electromyographic (EMG) signals were recorded from the hamstring muscles during two bouts of submaximal isokinetic (2.6 rad x s(-1)) eccentric (11 men, 9 women) or concentric (6 men, 4 women) contractions separated by 2 weeks. The EMG per unit torque and median frequency were analysed. The initial bout of eccentric exercise resulted in strength loss, pain and muscle tenderness, while the repeated eccentric bout resulted in a slight increase in strength, no pain and no muscle tenderness (bout x time effects, P < 0.05). Strength, pain and tenderness were unaffected by either bout of concentric exercise. The EMG per unit torque and median frequency were not different between the initial and repeated bouts of eccentric exercise. The EMG per unit torque and median frequency increased during both bouts of eccentric exercise (P < 0.01) but did not change during either concentric bout. In conclusion, there was no evidence that the repeated bout effect was due to a neural adaptation.

  4. Wave modulation in a nonlinear dispersive medium

    SciTech Connect

    Kim, Y.C.; Khadra, L.; Powers, E.J.

    1980-11-01

    A model describing the simultaneous amplitude and phase modulation of a carrier wave propagating in a nonlinear dispersive medium is developed in terms of nonlinear wave-wave interactions between the sidebands and a low frequency wave. It is also shown that the asymmetric distribution of sidebands is determined by the wavenumber dependence of the coupling coefficient. Digital complex demodulation techniques are used to study modulated waves in a weakly ionized plasma and the experimental results support the analytical model.

  5. Liquid chromatographic extraction medium

    DOEpatents

    Horwitz, E. Philip; Dietz, Mark L.

    1994-01-01

    A method and apparatus for extracting strontium and technetium values from biological, industrial and environmental sample solutions using a chromatographic column is described. An extractant medium for the column is prepared by generating a solution of a diluent containing a Crown ether and dispersing the solution on a resin substrate material. The sample solution is highly acidic and is introduced directed to the chromatographic column and strontium or technetium is eluted using deionized water.

  6. Liquid chromatographic extraction medium

    DOEpatents

    Horwitz, E.P.; Dietz, M.L.

    1994-09-13

    A method and apparatus are disclosed for extracting strontium and technetium values from biological, industrial and environmental sample solutions using a chromatographic column. An extractant medium for the column is prepared by generating a solution of a diluent containing a Crown ether and dispersing the solution on a resin substrate material. The sample solution is highly acidic and is introduced directed to the chromatographic column and strontium or technetium is eluted using deionized water. 1 fig.

  7. Nanospring behaviour of ankyrin repeats.

    PubMed

    Lee, Gwangrog; Abdi, Khadar; Jiang, Yong; Michaely, Peter; Bennett, Vann; Marszalek, Piotr E

    2006-03-09

    Ankyrin repeats are an amino-acid motif believed to function in protein recognition; they are present in tandem copies in diverse proteins in nearly all phyla. Ankyrin repeats contain antiparallel alpha-helices that can stack to form a superhelical spiral. Visual inspection of the extrapolated structure of 24 ankyrin-R repeats indicates the possibility of spring-like behaviour of the putative superhelix. Moreover, stacks of 17-29 ankyrin repeats in the cytoplasmic domains of transient receptor potential (TRP) channels have been identified as candidates for a spring that gates mechanoreceptors in hair cells as well as in Drosophila bristles. Here we report that tandem ankyrin repeats exhibit tertiary-structure-based elasticity and behave as a linear and fully reversible spring in single-molecule measurements by atomic force microscopy. We also observe an unexpected ability of unfolded repeats to generate force during refolding, and report the first direct measurement of the refolding force of a protein domain. Thus, we show that one of the most common amino-acid motifs has spring properties that could be important in mechanotransduction and in the design of nanodevices.

  8. Culture Medium for Enterobacteria

    PubMed Central

    Neidhardt, Frederick C.; Bloch, Philip L.; Smith, David F.

    1974-01-01

    A new minimal medium for enterobacteria has been developed. It supports growth of Escherichia coli and Salmonella typhimurium at rates comparable to those of any of the traditional media that have high phosphate concentrations, but each of the macronutrients (phosphate, sulfate, and nitrogen) is present at a sufficiently low level to permit isotopic labeling. Buffering capacity is provided by an organic dipolar ion, morpholinopropane sulfonate, which has a desirable pK (7.2) and no apparent inhibitory effect on growth. The medium has been developed with the objectives of (i) providing reproducibility of chemical composition, (ii) meeting the experimentally determined nutritional needs of the cell, (iii) avoiding an unnecessary excess of the major ionic species, (iv) facilitating the adjustment of the levels of individual ionic species, both for isotopic labeling and for nutritional studies, (v) supplying a complete array of micronutrients, (vi) setting a particular ion as the crop-limiting factor when the carbon and energy source is in excess, and (vii) providing maximal convenience in the manufacture and storage of the medium. PMID:4604283

  9. 47 CFR 90.247 - Mobile repeater stations.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... repeater to extend the communications range of hand-carried units subject to the following: (a) Mobile... same frequency is also used by the same station for direct communication with vehicular mobile units or... of the mobile unit and an automatic time-delay device that de-activates the transmitter after...

  10. 47 CFR 90.247 - Mobile repeater stations.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... repeaters and/or associated hand-carried transmitters may be assigned separate base/mobile frequencies for... with one or more base stations. (f) When automatically retransmitting messages originated by or... access signal can be achieved by use of digital or analog methods....

  11. 47 CFR 90.247 - Mobile repeater stations.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... repeaters and/or associated hand-carried transmitters may be assigned separate base/mobile frequencies for... with one or more base stations. (f) When automatically retransmitting messages originated by or... access signal can be achieved by use of digital or analog methods....

  12. Signal Hill solar-powered repeater report and recommendations

    NASA Astrophysics Data System (ADS)

    Smith, G. R.

    1984-08-01

    The parially active repeater (PAR) discussed is the GTE Lenkurt 700C1 repeater. The 700C1 repeater is the first radio of its kind to operate in the 7/8 GHz frequency band. The 700C1's low power consumption makes it ideal to be powered by solar voltaic cells. A new PAR site costs substantially less to develop than a fully active repeater since less support equipment is needed, no a-c power has to be brought to the site, and the building can be as small as 6' x 6'. A prototype 700C1 solar powered repeater was installed to eventually replace the existing poor microwave path between Big Eddy Substation and Wasco Radio Station. The repeater's RF performance is better than BPA's original specifications. The solar panels did not generate power during the winter months, so additional solar panels were added in May 1982. The new microwave path between Wasco and Big Eddy, via Signal Hill, is a large improvement over the previous path, which was via a double passive repeater; noise levels were reduced and signal strength improved.

  13. The Local Interstellar Medium

    NASA Astrophysics Data System (ADS)

    Ferlet, Roger

    Substantial progress in the field of the Local Interstellar Medium has been largely due to recent launches of space missions, mostly in the UV and X-ray domains, but also to ground-based observations, mainly in high resolution spectroscopy. However, a clear gap seems to remain between the wealth of new data and the theoretical understanding. This paper gives an overview of some observational aspects, with no attempt of completeness or doing justice to all the people involved in the field. As progress rarely evolves in straight paths, we can expect that our present picture of the solar system surroundings is not definitive.

  14. Frequency Combs

    NASA Astrophysics Data System (ADS)

    Hänsch, Theodor W.; Picqué, Nathalie

    Much of modern research in the field of atomic, molecular, and optical science relies on lasers, which were invented some 50 years ago and perfected in five decades of intense research and development. Today, lasers and photonic technologies impact most fields of science and they have become indispensible in our daily lives. Laser frequency combs were conceived a decade ago as tools for the precision spectroscopy of atomic hydrogen. Through the development of optical frequency comb techniques, technique a setup of the size 1 ×1 m2, good for precision measurements of any frequency, and even commercially available, has replaced the elaborate previous frequency-chain schemes for optical frequency measurements, which only worked for selected frequencies. A true revolution in optical frequency measurements has occurred, paving the way for the creation of all-optical clocks clock with a precision that might approach 10-18. A decade later, frequency combs are now common equipment in all frequency metrology-oriented laboratories. They are also becoming enabling tools for an increasing number of applications, from the calibration of astronomical spectrographs to molecular spectroscopy. This chapter first describes the principle of an optical frequency comb synthesizer. Some of the key technologies to generate such a frequency comb are then presented. Finally, a non-exhaustive overview of the growing applications is given.

  15. [Prolonging the vase life of carnation "Mabel" through integrating repeated ACC oxidase genes into its genome].

    PubMed

    Yu, Yi-Xun; Bao, Man-Zhu

    2004-10-01

    Carnation (Dianthus caryophyllus L.) is one of the most important cut flowers. The cultivar "Mabel" of carnation was transformed with direct repeat gene of ACC oxidase, the key enzyme in ethylene synthesis, driven by the CaMV35S promoter mediated by Agrobacterium tumefacien. Hygromycin phosphotransferase (HPT) gene was used as selection marker. Leaf explants were pre-cultured on shoot-inducing medium for 2 d, then immersed in Agrobacterium suspension for 8-12 min. Co-cultivation was carried out on the medium (MS+BA 1.0 mg/L+NAA 0.3 mg/L +Acetosyringone 100 micromol/L, pH 5.8-6.0) for 3 d. After that transformants were obtained by transferring explants to selection medium supplemented with 5 mg/L hygromycin (Hyg) and 400 mg/L cefotaxime (Cef). Southern blotting detection showed that a foreign gene was integrated into the carnation genome and 3 transgenic lines (T257, T299 and T273 line) obtained. Addition of acetosyringone and the time of co-culture were the main factors that influenced transformation frequency. After being transplanted to soil, transgenic plants were grew normally in greenhouse. Ethylene production of cut flower of transgenic T257 line was 95% lower than that of the control, and that of T299 line was reduced by 90% than that of the control, while that of transgenic T273 line has no of significantly different from control. Vase life of transgenic T257 line was 5 d longer than that of the control line at 25 degrees C.

  16. High-Speed Digital Signal Processing Method for Detection of Repeating Earthquakes Using GPGPU-Acceleration

    NASA Astrophysics Data System (ADS)

    Kawakami, Taiki; Okubo, Kan; Uchida, Naoki; Takeuchi, Nobunao; Matsuzawa, Toru

    2013-04-01

    Repeating earthquakes are occurring on the similar asperity at the plate boundary. These earthquakes have an important property; the seismic waveforms observed at the identical observation site are very similar regardless of their occurrence time. The slip histories of repeating earthquakes could reveal the existence of asperities: The Analysis of repeating earthquakes can detect the characteristics of the asperities and realize the temporal and spatial monitoring of the slip in the plate boundary. Moreover, we are expecting the medium-term predictions of earthquake at the plate boundary by means of analysis of repeating earthquakes. Although the previous works mostly clarified the existence of asperity and repeating earthquake, and relationship between asperity and quasi-static slip area, the stable and robust method for automatic detection of repeating earthquakes has not been established yet. Furthermore, in order to process the enormous data (so-called big data) the speedup of the signal processing is an important issue. Recently, GPU (Graphic Processing Unit) is used as an acceleration tool for the signal processing in various study fields. This movement is called GPGPU (General Purpose computing on GPUs). In the last few years the performance of GPU keeps on improving rapidly. That is, a PC (personal computer) with GPUs might be a personal supercomputer. GPU computing gives us the high-performance computing environment at a lower cost than before. Therefore, the use of GPUs contributes to a significant reduction of the execution time in signal processing of the huge seismic data. In this study, first, we applied the band-limited Fourier phase correlation as a fast method of detecting repeating earthquake. This method utilizes only band-limited phase information and yields the correlation values between two seismic signals. Secondly, we employ coherence function using three orthogonal components (East-West, North-South, and Up-Down) of seismic data as a

  17. Limitations on quantum key repeaters

    NASA Astrophysics Data System (ADS)

    Bäuml, Stefan; Christandl, Matthias; Horodecki, Karol; Winter, Andreas

    2015-04-01

    A major application of quantum communication is the distribution of entangled particles for use in quantum key distribution. Owing to noise in the communication line, quantum key distribution is, in practice, limited to a distance of a few hundred kilometres, and can only be extended to longer distances by use of a quantum repeater, a device that performs entanglement distillation and quantum teleportation. The existence of noisy entangled states that are undistillable but nevertheless useful for quantum key distribution raises the question of the feasibility of a quantum key repeater, which would work beyond the limits of entanglement distillation, hence possibly tolerating higher noise levels than existing protocols. Here we exhibit fundamental limits on such a device in the form of bounds on the rate at which it may extract secure key. As a consequence, we give examples of states suitable for quantum key distribution but unsuitable for the most general quantum key repeater protocol.

  18. Limitations on quantum key repeaters.

    PubMed

    Bäuml, Stefan; Christandl, Matthias; Horodecki, Karol; Winter, Andreas

    2015-04-23

    A major application of quantum communication is the distribution of entangled particles for use in quantum key distribution. Owing to noise in the communication line, quantum key distribution is, in practice, limited to a distance of a few hundred kilometres, and can only be extended to longer distances by use of a quantum repeater, a device that performs entanglement distillation and quantum teleportation. The existence of noisy entangled states that are undistillable but nevertheless useful for quantum key distribution raises the question of the feasibility of a quantum key repeater, which would work beyond the limits of entanglement distillation, hence possibly tolerating higher noise levels than existing protocols. Here we exhibit fundamental limits on such a device in the form of bounds on the rate at which it may extract secure key. As a consequence, we give examples of states suitable for quantum key distribution but unsuitable for the most general quantum key repeater protocol.

  19. Repeated DNA in Pneumocystis carinii.

    PubMed Central

    Stringer, S L; Hong, S T; Giuntoli, D; Stringer, J R

    1991-01-01

    A 16-kb DNA fragment designated Rp3-1 and cloned from the genome of rat-derived Pneumocystis carinii was found to contain sequences that were repeated approximately 70 times per genome. The repeated sequences in Rp3-1 spanned at least 10.4 kb. Sequences in Rp3-1 were present on each of the 16 P. carinii chromosomes resolved by field inversion gel electrophoresis. Most of the P. carinii genomic sequences homologous to those in the Rp3-1 clone appeared to be as long as those in the Rp3-1 clone but were highly polymorphic with respect to restriction enzyme cleavage sites. The Rp3-1 DNA fragment appears to be a member of a family of large, degenerate, dispersed repeats. Images PMID:1677941

  20. Magnetars as soft gamma repeaters

    NASA Astrophysics Data System (ADS)

    O'Meara, Karen

    1999-05-01

    The source of non-periodic, repeating, gamma-ray bursts located within our galaxy and near supernova remnants has been a mystery. A new theory by Christopher Thompson and Robert Duncan, postulating the existence of young neutron stars with intense magnetic fields (1E14 Gauss or more) offers an explanation. The intense magnetic fields of these "magnetars" suffice to create the phenomena detected from soft gamma-ray repeaters. The poles of a magnetar are hot enough to emit steady, low level x-ray emissions. Stresses on the star's crust due to the drifting of the magnetic field through the superfluid core create seismic activity and "starquakes," which release enormous bursts of energy. Data collected from recent soft gamma-ray repeater bursts appear to be strong evidence in support of this exciting new theory.

  1. Repeated observation of an uncertain signal. [sensory adaptation

    NASA Technical Reports Server (NTRS)

    Swets, J. A.; Birdsall, T. G.

    1978-01-01

    The focus here is on sensory adaptation, or progressively more appropriate attention, as repeated observations yield more information about a signal with an uncertain parameter. The signal was a brief sinusoid; its uncertain parameter was frequency. Detection performance is predicted from data on a signal of known and constant frequency, as a function of the number of frequencies the uncertain signal could assume. A comparison condition presented a signal that varied in a manner not permitting adaptation. Models derived from signal detection theory describe the ideal observation processes for the three signal conditions, and supply quantitative predictions of relative performances. The models are generally supported by the data.

  2. [An improved differential medium, CA medium, for differentiating Shigella].

    PubMed

    Tokoro, M; Nagano, I; Goto, K; Nakamura, A

    1990-07-01

    We devised a Citrate-Acetate (CA) medium for rapidly differentiating Shigella. The medium consisted of 3.0 g of sodium citrate, 2.0 g of sodium acetate, 0.2 g of glucose, 1.0 g of dipotassium phosphate, 1.0 g of mono ammonium phosphate, 0.2 g of magnesium sulfate, 5.0 g of sodium chloride, 0.08 g of brom thymol blue, 15.0 g of agar, and 1000 ml of distilled water. An evaluation was made of the CA medium, for the rapid differentiation of 23 Shigella strains, 129 Escherichia coli strains and 130 isolates, that formed colourless colonies suspected to be Shigella on SS agar plate, from feces of healthy people. The results obtained were as follows 1) On the CA medium, all Shigella strains did not grow and there was no change in colour. 2) Positive growth rates of E. coli strains after incubation for 24 hr at 37 degrees C on CA medium, sodium acetate medium (Acet) and Christensen citrate medium (C-Cit) were 96.0%, 95.2% and 28.0%, respectively. Therefore, the positive growth rate of E. coli strains after incubation for 24 hr on CA medium was significantly higher (p less than 0.01) than that on C-Cit medium. 3) Positive growth rates of isolates after incubation for 24 hr at 37 degrees C on CA medium, Acet medium and C-Cit medium were 95.4%, 83.1% and 71.5%, respectively. Therefore, the positive growth rates of isolates after incubation for 24 hr on CA medium was significantly higher (p less than 0.01) than that on Acet medium and C-Cit medium.(ABSTRACT TRUNCATED AT 250 WORDS)

  3. Hysteresis of magnetostructural transitions: Repeatable and non-repeatable processes

    NASA Astrophysics Data System (ADS)

    Provenzano, Virgil; Della Torre, Edward; Bennett, Lawrence H.; ElBidweihy, Hatem

    2014-02-01

    The Gd5Ge2Si2 alloy and the off-stoichiometric Ni50Mn35In15 Heusler alloy belong to a special class of metallic materials that exhibit first-order magnetostructural transitions near room temperature. The magnetic properties of this class of materials have been extensively studied due to their interesting magnetic behavior and their potential for a number of technological applications such as refrigerants for near-room-temperature magnetic refrigeration. The thermally driven first-order transitions in these materials can be field-induced in the reverse order by applying a strong enough field. The field-induced transitions are typically accompanied by the presence of large magnetic hysteresis, the characteristics of which are a complicated function of temperature, field, and magneto-thermal history. In this study we show that the virgin curve, the major loop, and sequentially measured MH loops are the results of both repeatable and non-repeatable processes, in which the starting magnetostructural state, prior to the cycling of field, plays a major role. Using the Gd5Ge2Si2 and Ni50Mn35In15 alloys, as model materials, we show that a starting single phase state results in fully repeatable processes and large magnetic hysteresis, whereas a mixed phase starting state results in non-repeatable processes and smaller hysteresis.

  4. DENSE MEDIUM CYCLONE OPTIMIZATON

    SciTech Connect

    Gerald H. Luttrell; Chris J. Barbee; Peter J. Bethell; Chris J. Wood

    2005-06-30

    Dense medium cyclones (DMCs) are known to be efficient, high-tonnage devices suitable for upgrading particles in the 50 to 0.5 mm size range. This versatile separator, which uses centrifugal forces to enhance the separation of fine particles that cannot be upgraded in static dense medium separators, can be found in most modern coal plants and in a variety of mineral plants treating iron ore, dolomite, diamonds, potash and lead-zinc ores. Due to the high tonnage, a small increase in DMC efficiency can have a large impact on plant profitability. Unfortunately, the knowledge base required to properly design and operate DMCs has been seriously eroded during the past several decades. In an attempt to correct this problem, a set of engineering tools have been developed to allow producers to improve the efficiency of their DMC circuits. These tools include (1) low-cost density tracers that can be used by plant operators to rapidly assess DMC performance, (2) mathematical process models that can be used to predict the influence of changes in operating and design variables on DMC performance, and (3) an expert advisor system that provides plant operators with a user-friendly interface for evaluating, optimizing and trouble-shooting DMC circuits. The field data required to develop these tools was collected by conducting detailed sampling and evaluation programs at several industrial plant sites. These data were used to demonstrate the technical, economic and environmental benefits that can be realized through the application of these engineering tools.

  5. The Interstellar Medium

    NASA Technical Reports Server (NTRS)

    Tielens, Alexander G. G. M.

    1995-01-01

    The Interstellar Medium (ISM) forms an integral part of the lifecycle of stars and the galaxy. Stars are formed by gravitational contraction of interstellar clouds. Over their life, stars return much of their mass to the ISM through winds and supernova explosions, resulting in a slow enrichment in heavy elements. Understanding the origin and evolution of the ISM is a key problem within astrophysics. The KAO has made many important contributions to studies of the interstellar medium both on the macro and on the micro scale. In this overview, I will concentrate on two breakthroughs in the last decade in which KAO observations have played a major role: (1) the importance of large Polycyclic Aromatic Hydrocarbon (PAH) molecules for the ISM (section 3) and (2) the study of Photodissociation Regions (PDRs) as an analog for the diffuse ISM at large (section 4). Appropriately, the micro and macro problem are intricately interwoven in these problems. Finally, section 5 reviews the origin of the (CII) emission observed by COBE.

  6. Medium wave exposure characterisation using exposure quotients.

    PubMed

    Paniagua, Jesús M; Rufo, Montaña; Jiménez, Antonio; Antolín, Alicia; Pinar, Iván

    2010-06-01

    One of the aspects considered in the International Commission on Non-Ionizing Radiation Protection guidelines is that, in situations of simultaneous exposure to fields of different frequencies, exposure quotients for thermal and electrical stimulation effects should be examined. The aim of the present work was to analyse the electromagnetic radiation levels and exposure quotients for exposure to multiple-frequency sources in the vicinity of medium wave radio broadcasting antennas. The measurements were made with a spectrum analyser and a monopole antenna. Kriging interpolation was used to prepare contour maps and to estimate the levels in the towns and villages of the zone. The results showed that the exposure quotient criterion based on electrical stimulation effects to be more stringent than those based on thermal effects or power density levels. Improvement of dosimetry evaluations requires the spectral components of the radiation to be quantified, followed by application of the criteria for exposure to multiple-frequency sources.

  7. Light beam frequency comb generator

    DOEpatents

    Priatko, G.J.; Kaskey, J.A.

    1992-11-24

    A light beam frequency comb generator uses an acousto-optic modulator to generate a plurality of light beams with frequencies which are uniformly separated and possess common noise and drift characteristics. A well collimated monochromatic input light beam is passed through this modulator to produce a set of both frequency shifted and unshifted optical beams. An optical system directs one or more frequency shifted beams along a path which is parallel to the path of the input light beam such that the frequency shifted beams are made incident on the modulator proximate to but separated from the point of incidence of the input light beam. After the beam is thus returned to and passed through the modulator repeatedly, a plurality of mutually parallel beams are generated which are frequency-shifted different numbers of times and possess common noise and drift characteristics. 2 figs.

  8. Light beam frequency comb generator

    DOEpatents

    Priatko, Gordon J.; Kaskey, Jeffrey A.

    1992-01-01

    A light beam frequency comb generator uses an acousto-optic modulator to generate a plurality of light beams with frequencies which are uniformly separated and possess common noise and drift characteristics. A well collimated monochromatic input light beam is passed through this modulator to produce a set of both frequency shifted and unshifted optical beams. An optical system directs one or more frequency shifted beams along a path which is parallel to the path of the input light beam such that the frequency shifted beams are made incident on the modulator proximate to but separated from the point of incidence of the input light beam. After the beam is thus returned to and passed through the modulator repeatedly, a plurality of mutually parallel beams are generated which are frequency-shifted different numbers of times and possess common noise and drift characteristics.

  9. Systematic exchanges between nucleotides: Genomic swinger repeats and swinger transcription in human mitochondria.

    PubMed

    Seligmann, Hervé

    2015-11-07

    Chargaff׳s second parity rule, quasi-equal single strand frequencies for complementary nucleotides, presumably results from insertion of repeats and inverted repeats during sequence genesis. Vertebrate mitogenomes escape this rule because repeats are counterselected: their hybridization produces loop bulges whose deletion is deleterious. Some DNA/RNA sequences match mitogenomes only after assuming one among 23 systematic nucleotide exchanges (swinger DNA/RNA: nine symmetric, e.g. A ↔ C; and 14 asymmetric, e.g. A → C → G → A). Swinger-transformed repeats do not hybridize, escaping selection against deletions due to bulge formation. Blast analyses of the human mitogenome detect swinger repeats for all 23 swinger types, more than in randomized sequences with identical length and nucleotide contents. Mean genomic swinger repeat lengths increase with observed human swinger RNA frequencies: swinger repeat and swinger RNA productions appear linked, perhaps by swinger RNA retrotranscription. Mean swinger repeat lengths are proportional to reading frame retrievability, post-swinger transformation, by the natural circular code. Genomic swinger repeats confirm at genomic level, independently of swinger RNA detection, occurrence of swinger polymerizations. They suggest that repeats, and swinger repeats in particular, contribute to genome genesis.

  10. Analysing two dinucleotide repeats of FVIII gene in Iranian population.

    PubMed

    Rabbani, B; Rezaeian, A; Khanahmad, H; Bagheri, R; Kamali, E; Zeinali, S

    2007-11-01

    Using dinucleotide repeats for carrier detection and prenatal diagnosis of haemophilia A patients, led us to find different alleles and their frequencies in Iranian population. Polymerase chain reaction (PCR) amplification of two short tandem repeat (STR) loci of factor VIII (FVIII) gene was performed, and the PCR products were resolved on 10% native polyacrylamide gel, and samples were analysed with sequenced DNA markers made of PCR cloning of the dinucleotide FVIII gene fragments. Seven different alleles were observed for intron 13 STR, having 18-24 (CA) repeating units and five alleles for intron 22 STR having 24-28 repeating units of (CACT). Bands produced during dinucleotide study were defined in detail so this could improve the genotyping of heterozygotes and homozygotes. Conformational band produced were characterized to specify the dinucleotide pattern. Our results confirm the Hardy-Weinberg proportions of the heterozygosity rate of the 85 analysed individuals. The observed heterozygosity rate for intron 13 and 22 was 52% and 59% respectively. Our data also indicate that our population is closer to caucasians than to any other populations. Finding different dinucleotide repeat alleles and their frequencies has made it possible to identify carriers and provide prenatal diagnosis with more confidence. This allows antenatal diagnosis to be performed in the vast majority of carriers.

  11. Learning with repeated-game strategies

    PubMed Central

    Ioannou, Christos A.; Romero, Julian

    2014-01-01

    We use the self-tuning Experience Weighted Attraction model with repeated-game strategies as a computer testbed to examine the relative frequency, speed of convergence and progression of a set of repeated-game strategies in four symmetric 2 × 2 games: Prisoner's Dilemma, Battle of the Sexes, Stag-Hunt, and Chicken. In the Prisoner's Dilemma game, we find that the strategy with the most occurrences is the “Grim-Trigger.” In the Battle of the Sexes game, a cooperative pair that alternates between the two pure-strategy Nash equilibria emerges as the one with the most occurrences. In the Stag-Hunt and Chicken games, the “Win-Stay, Lose-Shift” and “Grim-Trigger” strategies are the ones with the most occurrences. Overall, the pairs that converged quickly ended up at the cooperative outcomes, whereas the ones that were extremely slow to reach convergence ended up at non-cooperative outcomes. PMID:25126053

  12. Do Twelfths Terminate or Repeat?

    ERIC Educational Resources Information Center

    Ambrose, Rebecca; Burnison, Erica

    2015-01-01

    When finding the decimal equivalent of a fraction with 12 in the denominator, will it terminate or repeat? This question came from a seventh grader in author Erica Burnison's class as the student was pondering a poster generated by one of her classmates. Not only was the question intriguing, but it also affirmed the belief in the power of…

  13. Mechanical Anisotropy of Ankyrin Repeats

    PubMed Central

    Lee, Whasil; Zeng, Xiancheng; Rotolo, Kristina; Yang, Ming; Schofield, Christopher J.; Bennett, Vann; Yang, Weitao; Marszalek, Piotr E.

    2012-01-01

    Red blood cells are frequently deformed and their cytoskeletal proteins such as spectrin and ankyrin-R are repeatedly subjected to mechanical forces. While the mechanics of spectrin was thoroughly investigated in vitro and in vivo, little is known about the mechanical behavior of ankyrin-R. In this study, we combine coarse-grained steered molecular dynamics simulations and atomic force spectroscopy to examine the mechanical response of ankyrin repeats (ARs) in a model synthetic AR protein NI6C, and in the D34 fragment of native ankyrin-R when these proteins are subjected to various stretching geometry conditions. Our steered molecular dynamics results, supported by AFM measurements, reveal an unusual mechanical anisotropy of ARs: their mechanical stability is greater when their unfolding is forced to propagate from the N-terminus toward the C-terminus (repeats unfold at ∼60 pN), as compared to the unfolding in the opposite direction (unfolding force ∼ 30 pN). This anisotropy is also reflected in the complex refolding behavior of ARs. The origin of this unfolding and refolding anisotropy is in the various numbers of native contacts that are broken and formed at the interfaces between neighboring repeats depending on the unfolding/refolding propagation directions. Finally, we discuss how these complex mechanical properties of ARs in D34 may affect its behavior in vivo. PMID:22404934

  14. Do Twelfths Terminate or Repeat?

    ERIC Educational Resources Information Center

    Ambrose, Rebecca; Burnison, Erica

    2015-01-01

    When finding the decimal equivalent of a fraction with 12 in the denominator, will it terminate or repeat? This question came from a seventh grader in author Erica Burnison's class as the student was pondering a poster generated by one of her classmates. Not only was the question intriguing, but it also affirmed the belief in the power of…

  15. Pentapeptide Repeat Proteins and Cyanobacteria

    SciTech Connect

    Buchko, Garry W.

    2009-10-16

    Cyanobacteria are unique in many ways and one unusual feature is the presence of a suite of proteins that contain at least one domain with a minimum of eight tandem repeated five-residues (Rfr) of the general consensus sequence A[N/D]LXX. The function of such pentapeptide repeat proteins (PRPs) are still unknown, however, their prevalence in cyanobacteria suggests that they may play some role in the unique biological activities of cyanobacteria. As part of an inter-disciplinary Membrane Biology Grand Challenge at the Environmental Molecular Sciences Laboratory (Pacific Northwest National Laboratory) and Washington University in St. Louis, the genome of Cyanothece 51142 was sequenced and its molecular biology studied with relation to circadian rhythms. The genome of Cyanothece encodes for 35 proteins that contain at least one PRP domain. These proteins range in size from 105 (Cce_3102) to 930 (Cce_2929) kDa with the PRP domains ranging in predicted size from 12 (Cce_1545) to 62 (cce_3979) tandem pentapeptide repeats. Transcriptomic studies with 29 out of the 35 genes showed that at least three of the PRPs in Cyanothece 51142 (cce_0029, cce_3083, and cce_3272) oscillated with repeated periods of light and dark, further supporting a biological function for PRPs. Using X-ray diffraction crystallography, the structure for two pentapeptide repeat proteins from Cyanothece 51142 were determined, cce_1272 (aka Rfr32) and cce_4529 (aka Rfr23). Analysis of their molecular structures suggests that all PRP may share the same structural motif, a novel type of right-handed quadrilateral β-helix, or Rfr-fold, reminiscent of a square tower with four distinct faces. Each pentapeptide repeat occupies one face of the Rfr-fold with four consecutive pentapeptide repeats completing a coil that, in turn, stack upon each other to form “protein skyscrapers”. Details of the structural features of the Rfr-fold are reviewed here together with a discussion for the possible role of end

  16. Repeat Gamma Knife surgery for vestibular schwannomas

    PubMed Central

    Lonneville, Sarah; Delbrouck, Carine; Renier, Cécile; Devriendt, Daniel; Massager, Nicolas

    2015-01-01

    Background: Gamma Knife (GK) surgery is a recognized treatment option for the management of small to medium-sized vestibular schwannoma (VS) associated with high-tumor control and low morbidity. When a radiosurgical treatment fails to stop tumor growth, repeat GK surgery can be proposed in selected cases. Methods: A series of 27 GK retreatments was performed in 25 patients with VS; 2 patients underwent three procedures. The median time interval between GK treatments was 45 months. The median margin dose used for the first, second, and third GK treatments was 12 Gy, 12 Gy, and 14 Gy, respectively. Six patients (4 patients for the second irradiation and 2 patients for the third irradiation) with partial tumor regrowth were treated only on the growing part of the tumor using a median margin dose of 13 Gy. The median tumor volume was 0.9, 2.3, and 0.7 cc for the first, second, and third treatments, respectively. Stereotactic positron emission tomography (PET) guidance was used for dose planning in 6 cases. Results: Mean follow-up duration was 46 months (range 24–110). At the last follow-up, 85% of schwannomas were controlled. The tumor volume decreased, remained unchanged, or increased after retreatment in 15, 8, and 4 cases, respectively. Four patients had PET during follow-up, and all showed a significant metabolic decrease of the tumor. Hearing was not preserved after retreatment in any patients. New facial or trigeminal palsy did not occur after retreatment. Conclusions: Our results support the long-term efficacy and low morbidity of repeat GK treatment for selected patients with tumor growth after initial treatment. PMID:26500799

  17. Repeated measurement sampling in genetic association analysis with genotyping errors.

    PubMed

    Lai, Renzhen; Zhang, Hong; Yang, Yaning

    2007-02-01

    Genotype misclassification occurs frequently in human genetic association studies. When cases and controls are subject to the same misclassification model, Pearson's chi-square test has the correct type I error but may lose power. Most current methods adjusting for genotyping errors assume that the misclassification model is known a priori or can be assessed by a gold standard instrument. But in practical applications, the misclassification probabilities may not be completely known or the gold standard method can be too costly to be available. The repeated measurement design provides an alternative approach for identifying misclassification probabilities. With this design, a proportion of the subjects are measured repeatedly (five or more repeats) for the genotypes when the error model is completely unknown. We investigate the applications of the repeated measurement method in genetic association analysis. Cost-effectiveness study shows that if the phenotyping-to-genotyping cost ratio or the misclassification rates are relatively large, the repeat sampling can gain power over the regular case-control design. We also show that the power gain is not sensitive to the genetic model, genetic relative risk and the population high-risk allele frequency, all of which are typically important ingredients in association studies. An important implication of this result is that whatever the genetic factors are, the repeated measurement method can be applied if the genotyping errors must be accounted for or the phenotyping cost is high.

  18. Remote measurements of electro-physical parameters of layer mediums

    NASA Astrophysics Data System (ADS)

    Lobach, Vladimir T.; Dmitriev, Vladimir A.; Lobatch, Yaroslav V.

    1999-07-01

    The paper deals with the problem of measuring electrical and geometrical parameters of the layer medium. The measurements are based on the control of radio wave reflection coefficient as a function of frequency. Based on solution of the system of transcendental equations for reflection coefficient such parameters of the homogeneous layer medium as complex dielectric permeability, depth of the layer and complex dielectric permeability of the lower homogeneous hemispace.

  19. Modeling Excitable Systems Coupled Through External Medium

    NASA Astrophysics Data System (ADS)

    Noorbakhsh, Javad; Mehta, Pankaj

    2013-03-01

    Excitable systems are stable dynamical systems in which any input beyond a threshold results in a significant output. This behavior is ubiquitous in nature and is seen in biological systems such as Dictyostelium discoideum amoeba and neurons to oscillatory chemical reactions. In this work we will focus on transition to oscillation in populations of excitable systems coupled through an external medium and will study their synchronization. We will describe a mechanism to tune the frequency of oscillations using an external input and will study the effects of stochasticity and inhomogeneity on the collective behavior of the system. Furthermore we will include diffusion into the dynamics of the external medium and will study formation of spatial patterns, their characteristics and their robustness to different factors.

  20. White dwarfs and the interstellar medium

    NASA Technical Reports Server (NTRS)

    Dupree, A. K.; Raymond, J. C.

    1983-01-01

    Radiation emanating from hot (T greater than 40,000 K) white dwarfs can create large volumes of ionized material containing substantial column densities of highly ionized species, in particular Si IV and C IV. The ions N V and O VI can also be produced by hot, hydrogen-rich white dwarfs. These ionization spheres may be detectable around the nearby dwarfs. The relatively high space motions of these stars coupled with long recombination times in the interstellar medium suggest that a white dwarf leaves a region of ionized material - a fossil Stroemgren trail - that marks its progress through the galaxy. White dwarfs create a patchy substrate of ionized gas in the galactic plane and lead to extended ionized regions out of the plane. The spatial frequency of hot white dwarfs indicates that they contribute a radiative energy comparable to that provided by nondegenerate stars and by supernovae and capable of affecting the ionization balance of the interstellar medium.

  1. Optoelectronic Instrument Monitors pH in a Culture Medium

    NASA Technical Reports Server (NTRS)

    Anderson, Melody M.; Pellis, Neal; Jeevarajan, Anthony S.; Taylor, Thomas D.

    2004-01-01

    An optoelectronic instrument monitors the pH of an aqueous cell-culture medium in a perfused rotating-wall-vessel bioreactor. The instrument is designed to satisfy the following requirements: It should be able to measure the pH of the medium continuously with an accuracy of 0.1 in the range from 6.5 to 7.5. It should be noninvasive. Any material in contact with the culture medium should be sterilizable as well as nontoxic to the cells to be grown in the medium. The biofilm that inevitably grows on any surface in contact with the medium should not affect the accuracy of the pH measurement. It should be possible to obtain accurate measurements after only one calibration performed prior to a bioreactor cell run. The instrument should be small and lightweight. The instrument includes a quartz cuvette through which the culture medium flows as it is circulated through the bioreactor. The cuvette is sandwiched between light source on one side and a photodetector on the other side. The light source comprises a red and a green light-emitting diode (LED) that are repeatedly flashed in alternation with a cycle time of 5 s. The responses of the photodiode to the green and red LEDs are processed electronically to obtain a quantity proportional to the ratio between the amounts of green and red light transmitted through the medium.

  2. Low intensity electromagnetic irradiation with 70.6 and 73 GHz frequencies affects Escherichia coli growth and changes water properties.

    PubMed

    Torgomyan, Heghine; Kalantaryan, Vitaly; Trchounian, Armen

    2011-07-01

    The low intensity electromagnetic irradiation (EMI) of the 70.6 and 73 GHz frequency is resonant for Escherichia coli but not for water. In this study, E. coli irradiation with this EMI during 1 h directly and in bi-distilled water or in the assay buffer with those frequencies resulted with noticeable changes in bacterial growth parameters. Furthermore, after EMI, 2 h rest of bacteria renewed their growth in 1.2-fold, but repeated EMI--had no significant action. Moreover, water absorbance, pH, and electric conductance were changed markedly after such irradiation. The results point out that EMI of the 70.6 and 73 GHz frequency can interact with bacteria affecting growth and in the same time with the surrounding medium (water) as well.

  3. Dominant short repeated sequences in bacterial genomes.

    PubMed

    Avershina, Ekaterina; Rudi, Knut

    2015-03-01

    We use a novel multidimensional searching approach to present the first exhaustive search for all possible repeated sequences in 166 genomes selected to cover the bacterial domain. We found an overrepresentation of repeated sequences in all but one of the genomes. The most prevalent repeats by far were related to interspaced short palindromic repeats (CRISPRs)—conferring bacterial adaptive immunity. We identified a deep branching clade of thermophilic Firmicutes containing the highest number of CRISPR repeats. We also identified a high prevalence of tandem repeated heptamers. In addition, we identified GC-rich repeats that could potentially be involved in recombination events. Finally, we identified repeats in a 16322 amino acid mega protein (involved in biofilm formation) and inverted repeats flanking miniature transposable elements (MITEs). In conclusion, the exhaustive search for repeated sequences identified new elements and distribution of these, which has implications for understanding both the ecology and evolution of bacteria.

  4. Observations of Soft Gamma Repeaters

    NASA Technical Reports Server (NTRS)

    Kouveliotou, Chryssa

    2004-01-01

    Magnetars (Soft Gamma Repeaters and Anomalous X-ray Pulsars) are a subclass of neutron stars characterized by their recurrent X-ray bursts. While in an active (bursting) state (lasting anywhere between days and years), they are emit&ng hundreds of predominantly soft (kT=30 kev), short (0.1-100 ms long) events. Their quiescent source x-ray light ewes exhibit puhlions rotational period rate changes (spin-down) indicate that their magnetic fields are extremely high, of the order of 10^14- 10^l5 G. Such high B-field objects, dubbed "magnetars", had been predicted to exist in 1992, but the first concrete observational evidence were obtained in 1998 for two of these sources. I will discuss here the history of Soft Gamma Repeaters, and their spectral, timing and flux characteristics both in the persistent and their burst emission.

  5. Ring laser having an output at a single frequency

    DOEpatents

    Hackell, Lloyd A.

    1991-01-01

    A ring laser is disclosed that produces a single frequency of laser radiation in either the pulsed mode of operation or the continuous waveform (cw) mode of operation. The laser comprises a ring laser in a bowtie configuration, a birefringent gain material such as Nd:YLF, an improved optical diode that supports laser oscillation having a desired direction of travel and linear polarization, and a Q-switch. An output coupler (mirror) having a high reflectivity, such as 94%, is disclosed. Also disclosed is a self-seeded method of operation in which the laser can provide a pulse or a series of pulses of high power laser radiation at a consistent single frequency with a high degree of amplitude stability and temporal stability. In operation, the laser is operated in continuous waveform (cw) at a low power output with the Q-switch introducing a loss into the resonating cavity. Pumping is continued at a high level, causing the gain material to store energy. When a pulse is desired, the Q-switch is actuated to substantially reduce the losses so that a pulse can build up based on the low level cw oscillation. The pulse quickly builds, using the stored energy in the gain medium to provide a high power output pulse. The process may be repeated to provide a series of high power pulses of a consistent single frequency.

  6. Analytic descriptions of cylindrical electromagnetic waves in a nonlinear medium

    PubMed Central

    Xiong, Hao; Si, Liu-Gang; Yang, Xiaoxue; Wu, Ying

    2015-01-01

    A simple but highly efficient approach for dealing with the problem of cylindrical electromagnetic waves propagation in a nonlinear medium is proposed based on an exact solution proposed recently. We derive an analytical explicit formula, which exhibiting rich interesting nonlinear effects, to describe the propagation of any amount of cylindrical electromagnetic waves in a nonlinear medium. The results obtained by using the present method are accurately concordant with the results of using traditional coupled-wave equations. As an example of application, we discuss how a third wave affects the sum- and difference-frequency generation of two waves propagation in the nonlinear medium. PMID:26073066

  7. Birefringence in a chiral medium, via temporal cloaking

    NASA Astrophysics Data System (ADS)

    Khan, Humayun; Haneef, Muhammad

    2017-05-01

    This paper reports theoretical investigation of birefringence in a chiral medium for the creation of temporal cloaking. The chiral medium splits the input probe beam into left/right circular polarized beams. These left/right circular polarized beams are then controlled and modified within the chiral medium. The left circular polarized beam delays by 24 ns whereas the right circular polarized beam advances by  -23 ns at a control field of rabbi frequency 6γ . This opens a 47 ns time gap for temporal cloaking to hide information without noise corruption and energy loss. The results have potential applications in communication devices for secure propagation of light pulse.

  8. Analytic descriptions of cylindrical electromagnetic waves in a nonlinear medium.

    PubMed

    Xiong, Hao; Si, Liu-Gang; Yang, Xiaoxue; Wu, Ying

    2015-06-15

    A simple but highly efficient approach for dealing with the problem of cylindrical electromagnetic waves propagation in a nonlinear medium is proposed based on an exact solution proposed recently. We derive an analytical explicit formula, which exhibiting rich interesting nonlinear effects, to describe the propagation of any amount of cylindrical electromagnetic waves in a nonlinear medium. The results obtained by using the present method are accurately concordant with the results of using traditional coupled-wave equations. As an example of application, we discuss how a third wave affects the sum- and difference-frequency generation of two waves propagation in the nonlinear medium.

  9. Seafloor geodesy from repeated sidescan sonar surveys

    NASA Astrophysics Data System (ADS)

    DeSanto, John B.; Sandwell, David T.; Chadwell, C. David

    2016-07-01

    Accurate seafloor geodetic methods are critical to the study of marine natural hazards such as megathrust earthquakes, landslides, and volcanoes. We propose digital image correlation of repeated shipboard sidescan sonar surveys as a measurement of seafloor deformation. We test this method using multibeam surveys collected in two locales: 2500 m deep lightly sedimented seafloor on the flank of a spreading ridge and 4300 m deep heavily sedimented seafloor far from any plate boundary. Correlation of these surveys are able to recover synthetic displacements in the across-track (range) direction accurate to within 1 m and in the along-track (azimuth) direction accurate to within 1-10 m. We attribute these accuracies to the inherent resolution of sidescan data being better in the range dimension than the azimuth dimension. These measurements are primarily limited by the accuracy of the ship navigation. Dual-frequency GPS units are accurate to ˜10 cm, but single-frequency GPS units drift on the order of 1 m/h and are insufficient for geodetic application.

  10. A repeating fast radio burst.

    PubMed

    Spitler, L G; Scholz, P; Hessels, J W T; Bogdanov, S; Brazier, A; Camilo, F; Chatterjee, S; Cordes, J M; Crawford, F; Deneva, J; Ferdman, R D; Freire, P C C; Kaspi, V M; Lazarus, P; Lynch, R; Madsen, E C; McLaughlin, M A; Patel, C; Ransom, S M; Seymour, A; Stairs, I H; Stappers, B W; van Leeuwen, J; Zhu, W W

    2016-03-10

    Fast radio bursts are millisecond-duration astronomical radio pulses of unknown physical origin that appear to come from extragalactic distances. Previous follow-up observations have failed to find additional bursts at the same dispersion measure (that is, the integrated column density of free electrons between source and telescope) and sky position as the original detections. The apparent non-repeating nature of these bursts has led to the suggestion that they originate in cataclysmic events. Here we report observations of ten additional bursts from the direction of the fast radio burst FRB 121102. These bursts have dispersion measures and sky positions consistent with the original burst. This unambiguously identifies FRB 121102 as repeating and demonstrates that its source survives the energetic events that cause the bursts. Additionally, the bursts from FRB 121102 show a wide range of spectral shapes that appear to be predominantly intrinsic to the source and which vary on timescales of minutes or less. Although there may be multiple physical origins for the population of fast radio bursts, these repeat bursts with high dispersion measure and variable spectra specifically seen from the direction of FRB 121102 support an origin in a young, highly magnetized, extragalactic neutron star.

  11. A repeating fast radio burst

    NASA Astrophysics Data System (ADS)

    Spitler, L. G.; Scholz, P.; Hessels, J. W. T.; Bogdanov, S.; Brazier, A.; Camilo, F.; Chatterjee, S.; Cordes, J. M.; Crawford, F.; Deneva, J.; Ferdman, R. D.; Freire, P. C. C.; Kaspi, V. M.; Lazarus, P.; Lynch, R.; Madsen, E. C.; McLaughlin, M. A.; Patel, C.; Ransom, S. M.; Seymour, A.; Stairs, I. H.; Stappers, B. W.; van Leeuwen, J.; Zhu, W. W.

    2016-03-01

    Fast radio bursts are millisecond-duration astronomical radio pulses of unknown physical origin that appear to come from extragalactic distances. Previous follow-up observations have failed to find additional bursts at the same dispersion measure (that is, the integrated column density of free electrons between source and telescope) and sky position as the original detections. The apparent non-repeating nature of these bursts has led to the suggestion that they originate in cataclysmic events. Here we report observations of ten additional bursts from the direction of the fast radio burst FRB 121102. These bursts have dispersion measures and sky positions consistent with the original burst. This unambiguously identifies FRB 121102 as repeating and demonstrates that its source survives the energetic events that cause the bursts. Additionally, the bursts from FRB 121102 show a wide range of spectral shapes that appear to be predominantly intrinsic to the source and which vary on timescales of minutes or less. Although there may be multiple physical origins for the population of fast radio bursts, these repeat bursts with high dispersion measure and variable spectra specifically seen from the direction of FRB 121102 support an origin in a young, highly magnetized, extragalactic neutron star.

  12. A PLL Synthesizer with Learning Repeatable Fluctuation of Input Signal

    NASA Astrophysics Data System (ADS)

    Ono, Hiroyuki

    This paper describes a high frequency PLL (Phase Locked Loop) synthesizer with a function of learning then eliminating repeatable fluctuation of timing intervals on series input pulses. Typical spindle encoder generates digital pulses according to the revolution speed. The intervals of each pulse have repeatable fluctuation every revolution by eccentricity or warpage of the encoder scale disk. This method provides a programmable counter for the loop counter of PLL circuit and an interval counter with memory in order to learn the repeatable fluctuation. After the learning process, the PLL generates very pure tone clock signal based on the real flutter components of the spindle revolution speed without influenced by encoder errors. This method has been applied to a hard disk test system in order to generate 3GHz read/write clock.

  13. DNA Inversions between Short Inverted Repeats in Escherichia Coli

    PubMed Central

    Schofield, M. A.; Agbunag, R.; Miller, J. H.

    1992-01-01

    Using site-specific mutagenesis in vitro, we have constructed Escherichia coli strains that allow the detection of the inversion of an 800-bp segment in the lac region. The invertible segment is bounded by inverted repeats of either 12 or 23 bp. Inversions occurring at these inverted repeats will restore the Lac(+) phenotype. Inversions can be detected at both short homologies at frequencies ranging from 0.5 X 10(-8) to 1 X 10(-7). These events, which have been verified by DNA sequence analysis, are reduced up to 1000-fold in strains deficient for either RecA, RecB or RecC. They are not reduced in strains deficient in the RecF,J pathway. These results show that the RecB,C,D system can mediate rearrangements at short sequence repeats, and probably plays a major role in cellular rearrangements. PMID:1427029

  14. Radiation of a relativistic electron in a periodically inhomogeneous medium

    NASA Astrophysics Data System (ADS)

    Gevorgian, Lekdar A.

    2005-08-01

    The problem of hard transition radiation (HTR) produced by relativistic charged particle passing through periodically inhomogeneous medium with uniform velocity has been solved. Due to the medium inhomogeneities the phase of radiation vector potential varies periodically with amplitude growing. The application of approximation methods for solving the given problem shows that this amplitude is constant; the existing resonance condition between the radiation frequency and angle undergoes essential changes. This, in turn, changes the spectral distribution characteristics. The principle of harmonics equivalence in HTR is revealed. This principle says that the frequency distribution of radiation intensity is the same for different harnionics. For strongly inhomogenous medium frequency intervals of harmonics are overlapped. Consequently the HTR total intensity does not depend upon frequency up to the critical frequency. It is several orders higher as it was assume in former conceptions. The frequency distribution varies inversely with particle energy squared. On the other side the energy of photons at the critical frequency grows quadratically with the particle energy. Therefore, the energy losses do not depend on the particle energy, but under certain conditions can be of the same order as its energy.

  15. Experimentally Induced Repeated Anhydrobiosis in the Eutardigrade Richtersius coronifer

    PubMed Central

    2016-01-01

    Tardigrades represent one of the main animal groups with anhydrobiotic capacity at any stage of their life cycle. The ability of tardigrades to survive repeated cycles of anhydrobiosis has rarely been studied but is of interest to understand the factors constraining anhydrobiotic survival. The main objective of this study was to investigate the patterns of survival of the eutardigrade Richtersius coronifer under repeated cycles of desiccation, and the potential effect of repeated desiccation on size, shape and number of storage cells. We also analyzed potential change in body size, gut content and frequency of mitotic storage cells. Specimens were kept under non-cultured conditions and desiccated under controlled relative humidity. After each desiccation cycle 10 specimens were selected for analysis of morphometric characteristics and mitosis. The study demonstrates that tardigrades may survive up to 6 repeated desiccations, with declining survival rates with increased number of desiccations. We found a significantly higher proportion of animals that were unable to contract properly into a tun stage during the desiccation process at the 5th and 6th desiccations. Also total number of storage cells declined at the 5th and 6th desiccations, while no effect on storage cell size was observed. The frequency of mitotic storage cells tended to decline with higher number of desiccation cycles. Our study shows that the number of consecutive cycles of anhydrobiosis that R. coronifer may undergo is limited, with increased inability for tun formation and energetic constraints as possible causal factors. PMID:27828978

  16. Experimentally Induced Repeated Anhydrobiosis in the Eutardigrade Richtersius coronifer.

    PubMed

    Czernekova, Michaela; Jönsson, K Ingemar

    2016-01-01

    Tardigrades represent one of the main animal groups with anhydrobiotic capacity at any stage of their life cycle. The ability of tardigrades to survive repeated cycles of anhydrobiosis has rarely been studied but is of interest to understand the factors constraining anhydrobiotic survival. The main objective of this study was to investigate the patterns of survival of the eutardigrade Richtersius coronifer under repeated cycles of desiccation, and the potential effect of repeated desiccation on size, shape and number of storage cells. We also analyzed potential change in body size, gut content and frequency of mitotic storage cells. Specimens were kept under non-cultured conditions and desiccated under controlled relative humidity. After each desiccation cycle 10 specimens were selected for analysis of morphometric characteristics and mitosis. The study demonstrates that tardigrades may survive up to 6 repeated desiccations, with declining survival rates with increased number of desiccations. We found a significantly higher proportion of animals that were unable to contract properly into a tun stage during the desiccation process at the 5th and 6th desiccations. Also total number of storage cells declined at the 5th and 6th desiccations, while no effect on storage cell size was observed. The frequency of mitotic storage cells tended to decline with higher number of desiccation cycles. Our study shows that the number of consecutive cycles of anhydrobiosis that R. coronifer may undergo is limited, with increased inability for tun formation and energetic constraints as possible causal factors.

  17. Wave propagation in a random medium

    NASA Technical Reports Server (NTRS)

    Lee, R. W.; Harp, J. C.

    1969-01-01

    A simple technique is used to derive statistical characterizations of the perturbations imposed upon a wave (plane, spherical or beamed) propagating through a random medium. The method is essentially physical rather than mathematical, and is probably equivalent to the Rytov method. The limitations of the method are discussed in some detail; in general they are restrictive only for optical paths longer than a few hundred meters, and for paths at the lower microwave frequencies. Situations treated include arbitrary path geometries, finite transmitting and receiving apertures, and anisotropic media. Results include, in addition to the usual statistical quantities, time-lagged functions, mixed functions involving amplitude and phase fluctuations, angle-of-arrival covariances, frequency covariances, and other higher-order quantities.

  18. Frequency modulation drive for a piezoelectric motor

    DOEpatents

    Mittas, Anthony

    2001-01-01

    A piezoelectric motor has peak performance at a specific frequency f.sub.1 that may vary over a range of frequencies. A drive system is disclosed for operating such a motor at peak performance without feedback. The drive system consists of the motor and an ac source connected to power the motor, the ac source repeatedly generating a frequency over a range from f.sub.1 -.DELTA.x to f.sub.1 +.DELTA.y.

  19. Polymorphism of CAG repeats in androgen receptor of carnivores.

    PubMed

    Wang, Qin; Zhang, Xiuyue; Wang, Xiaofang; Zeng, Bo; Jia, Xiaodong; Hou, Rong; Yue, Bisong

    2012-03-01

    Androgen effect is mediated by the androgen receptor (AR). The polymorphism of CAG triplet repeat (polyCAG), in the N-terminal transactivation domain of the AR protein, has been involved either in endocrine or neurological disorders in human. We obtained partial sequence of AR exon 1 in 10 carnivore species. In most carnivore species, polyglutamine length polymorphism presented in all three CAG repeat regions of AR, in contrast, only CAG-I site polymorphism presented in primate species, and CAG-I and CAG-III sites polymorphism presented in Canidae. Therefore, studies focusing on disease-associated polymorphism of poly(CAG) in carnivore species AR should investigate all three CAG repeats sites, and should not only consider CAG-I sites as the human disease studies. The trinucleotide repeat length in carnivore AR exon 1 had undergone from expansions to contractions during carnivores evolution, unlike a linear increase in primate species. Furthermore, the polymorphisms of the triplet-repeats in the same tissue (somatic mosaicism) were demonstrated in Moutain weasel, Eurasian lynx, Clouded leopard, Chinese tiger, Black leopard and Leopard AR. And, the abnormal stop codon was found in the exon 1 of three carnivore species AR (Moutain weasel, Eurasian lynx and Black leopard). It seemed to have a high frequency presence of tissue-specific somatic in carnivores AR genes. Thus the in vivo mechanism leading to such highly variable phenotypes of the described mutations, and their impact on these animals, are worthwhile to be further elucidated.

  20. Frequency spirals

    SciTech Connect

    Ottino-Löffler, Bertrand; Strogatz, Steven H.

    2016-09-15

    We study the dynamics of coupled phase oscillators on a two-dimensional Kuramoto lattice with periodic boundary conditions. For coupling strengths just below the transition to global phase-locking, we find localized spatiotemporal patterns that we call “frequency spirals.” These patterns cannot be seen under time averaging; they become visible only when we examine the spatial variation of the oscillators' instantaneous frequencies, where they manifest themselves as two-armed rotating spirals. In the more familiar phase representation, they appear as wobbly periodic patterns surrounding a phase vortex. Unlike the stationary phase vortices seen in magnetic spin systems, or the rotating spiral waves seen in reaction-diffusion systems, frequency spirals librate: the phases of the oscillators surrounding the central vortex move forward and then backward, executing a periodic motion with zero winding number. We construct the simplest frequency spiral and characterize its properties using analytical and numerical methods. Simulations show that frequency spirals in large lattices behave much like this simple prototype.

  1. Accumulate Repeat Accumulate Coded Modulation

    NASA Technical Reports Server (NTRS)

    Abbasfar, Aliazam; Divsalar, Dariush; Yao, Kung

    2004-01-01

    In this paper we propose an innovative coded modulation scheme called 'Accumulate Repeat Accumulate Coded Modulation' (ARA coded modulation). This class of codes can be viewed as serial turbo-like codes, or as a subclass of Low Density Parity Check (LDPC) codes that are combined with high level modulation. Thus at the decoder belief propagation can be used for iterative decoding of ARA coded modulation on a graph, provided a demapper transforms the received in-phase and quadrature samples to reliability of the bits.

  2. Repeated high-intensity exercise in professional rugby union.

    PubMed

    Austin, Damien; Gabbett, Tim; Jenkins, David

    2011-07-01

    The aim of the present study was to describe the frequency, duration, and nature of repeated high-intensity exercise in Super 14 rugby union. Time-motion analysis was used during seven competition matches over the 2008 and 2009 Super 14 seasons; five players from each of four positional groups (front row forwards, back row forwards, inside backs, and outside backs) were assessed (20 players in total). A repeated high-intensity exercise bout was considered to involve three or more sprints, and/or tackles and/or scrum/ruck/maul activities within 21 s during the same passage of play. The range of repeated high-intensity exercise bouts for each group in a match was as follows: 11-18 for front row forwards, 11-21 for back row forwards, 13-18 for inside backs, and 2-11 for outside backs. The durations of the most intense repeated high-intensity exercise bouts for each position ranged from 53 s to 165 s and the minimum recovery periods between repeated high-intensity exercise bouts ranged from 25 s for the back row forwards to 64 s for the front row forwards. The present results show that repeated high-intensity exercise bouts vary in duration and activities relative to position but all players in a game will average at least 10 changes in activity in the most demanding bouts and complete at least one tackle and two sprints. The most intense periods of activity are likely to last as long as 120 s and as little as 25 s recovery may separate consecutive repeated high-intensity exercise bouts. The present findings can be used by coaches to prepare their players for the most demanding passages of play likely to be experienced in elite rugby union.

  3. New medium licensed for campylobacter

    USDA-ARS?s Scientific Manuscript database

    A medium, “Campy-Cefex”, has been licensed by the ARS Office of Technology Transfer with Becton Dickinson (No. 1412-002) and Neogen (No. 1412-001) based on patent No. 5,891,709, “Campy-Cefex Selective and Differential Medium for Campylobacter” by Dr. Norman Stern of the Poultry Microbiological Safet...

  4. Effect of trinucleotide repeat length and parental sex on phenotypic variation in spinocerebellar ataxia I

    SciTech Connect

    Jodice, C.; Malaspina, P.; Persichetti, F.; Novelletto, A.; Terrenato, L. ); Spadaro, M.; Morocutti, C. ); Giunti, P. Institute of Neurology, London ); Harding, A.E. ); Frontali, M. )

    1994-06-01

    Trinucleotide repeat expansion has been found in 64 subjects from 19 families: 57 patients with SCA1 and 7 subjects predicted, by haplotype analysis, to carry the mutation. Comparison with a large set of normal chromosomes shows two distinct distributions, with a much wider variation among expanded chromosomes. The sex of transmitting parent plays a major role in the size distribution of expanded alleles, those with >54 repeats being transmitted by affected fathers exclusively. The data suggest that alleles with >54 repeats have a reduced chance of survival; these appear to be replaced in each generation by further expansion of alleles in the low- to medium-expanded repeat range, preferentially in male transmission. Detailed clinical follow-up of a subset of patients demonstrates significant relationships between increasing repeat number on expanded chromosomes and earlier age at onset, faster progression of the disease, and earlier age at death.

  5. Crowding by a repeating pattern

    PubMed Central

    Rosen, Sarah; Pelli, Denis G.

    2015-01-01

    Theinability to recognize a peripheral target among flankers is called crowding. For a foveal target, crowding can be distinguished from overlap masking by its sparing of detection, linear scaling with eccentricity, and invariance with target size.Crowding depends on the proximity and similarity of the flankers to the target. Flankers that are far from or dissimilar to the target do not crowd it. On a gray page, text whose neighboring letters have different colors, alternately black and white, has enough dissimilarity that it might escape crowding. Since reading speed is normally limited by crowding, escape from crowding should allow faster reading. Yet reading speed is unchanged (Chung & Mansfield, 2009). Why? A recent vernier study found that using alternating-color flankers produces strong crowding (Manassi, Sayim, & Herzog, 2012). Might that effect occur with letters and reading? Critical spacing is the minimum center-to-center target–flanker spacing needed to correctly identify the target. We measure it for a target letter surrounded by several equidistant flanker letters of the same polarity, opposite polarity, or mixed polarity: alternately white and black. We find strong crowding in the alternating condition, even though each flanker letter is beyond its own critical spacing (as measured in a separate condition). Thus a periodic repeating pattern can produce crowding even when the individual elements do not. Further, in all conditions we find that, once a periodic pattern repeats (two cycles), further repetition does not affect critical spacing of the innermost flanker. PMID:26024457

  6. Crowding by a repeating pattern.

    PubMed

    Rosen, Sarah; Pelli, Denis G

    2015-01-01

    Theinability to recognize a peripheral target among flankers is called crowding. For a foveal target, crowding can be distinguished from overlap masking by its sparing of detection, linear scaling with eccentricity, and invariance with target size.Crowding depends on the proximity and similarity of the flankers to the target. Flankers that are far from or dissimilar to the target do not crowd it. On a gray page, text whose neighboring letters have different colors, alternately black and white, has enough dissimilarity that it might escape crowding. Since reading speed is normally limited by crowding, escape from crowding should allow faster reading. Yet reading speed is unchanged (Chung & Mansfield, 2009). Why? A recent vernier study found that using alternating-color flankers produces strong crowding (Manassi, Sayim, & Herzog, 2012). Might that effect occur with letters and reading? Critical spacing is the minimum center-to-center target-flanker spacing needed to correctly identify the target. We measure it for a target letter surrounded by several equidistant flanker letters of the same polarity, opposite polarity, or mixed polarity: alternately white and black. We find strong crowding in the alternating condition, even though each flanker letter is beyond its own critical spacing (as measured in a separate condition). Thus a periodic repeating pattern can produce crowding even when the individual elements do not. Further, in all conditions we find that, once a periodic pattern repeats (two cycles), further repetition does not affect critical spacing of the innermost flanker.

  7. CDC Vital Signs: Preventing Repeat Teen Births

    MedlinePlus

    ... file Error processing SSI file Preventing Repeat Teen Births Recommend on Facebook Tweet Share Compartir On this ... Too many teens, ages 15–19, have repeat births. Nearly 1 in 5 births to teens, ages ...

  8. Repeated binge-like ethanol drinking alters ethanol drinking patterns and depresses striatal GABAergic transmission.

    PubMed

    Wilcox, Mark V; Cuzon Carlson, Verginia C; Sherazee, Nyssa; Sprow, Gretchen M; Bock, Roland; Thiele, Todd E; Lovinger, David M; Alvarez, Veronica A

    2014-02-01

    Repeated cycles of binge alcohol drinking and abstinence are key components in the development of dependence. However, the precise behavioral mechanisms underlying binge-like drinking and its consequences on striatal synaptic physiology remain unclear. In the present study, ethanol and water drinking patterns were recorded with high temporal resolution over 6 weeks of binge-like ethanol drinking using the 'drinking in the dark' (DID) protocol. The bottle exchange occurring at the beginning of each session prompted a transient increase in the drinking rate that might facilitate the acquisition of ethanol binge-like drinking. Ethanol drinking mice also displayed a 'front-loading' behavior, in which the highest rate of drinking was recorded during the first 15 min. This rate increased over weeks and paralleled the mild escalation of blood ethanol concentrations. GABAergic and glutamatergic transmission in the dorsal striatum were examined following DID. Spontaneous glutamatergic transmission and the density of dendritic spines were unchanged after ethanol drinking. However, the frequency of GABAA receptor-mediated inhibitory postsynaptic currents was depressed in medium spiny neurons of ethanol drinking mice. A history of ethanol drinking also increased ethanol preference and altered the acute ethanol effects on GABAergic transmission differentially in dorsolateral and dorsomedial striatum. Together, the study shows that the bottle exchange during DID promotes fast, voluntary ethanol drinking and that this intermittent pattern of ethanol drinking causes a depression of GABAergic transmission in the dorsal striatum.

  9. Repeated Binge-Like Ethanol Drinking Alters Ethanol Drinking Patterns and Depresses Striatal GABAergic Transmission

    PubMed Central

    Wilcox, Mark V; Carlson, Verginia C Cuzon; Sherazee, Nyssa; Sprow, Gretchen M; Bock, Roland; Thiele, Todd E; Lovinger, David M; Alvarez, Veronica A

    2014-01-01

    Repeated cycles of binge alcohol drinking and abstinence are key components in the development of dependence. However, the precise behavioral mechanisms underlying binge-like drinking and its consequences on striatal synaptic physiology remain unclear. In the present study, ethanol and water drinking patterns were recorded with high temporal resolution over 6 weeks of binge-like ethanol drinking using the ‘drinking in the dark' (DID) protocol. The bottle exchange occurring at the beginning of each session prompted a transient increase in the drinking rate that might facilitate the acquisition of ethanol binge-like drinking. Ethanol drinking mice also displayed a ‘front-loading' behavior, in which the highest rate of drinking was recorded during the first 15 min. This rate increased over weeks and paralleled the mild escalation of blood ethanol concentrations. GABAergic and glutamatergic transmission in the dorsal striatum were examined following DID. Spontaneous glutamatergic transmission and the density of dendritic spines were unchanged after ethanol drinking. However, the frequency of GABAA receptor-mediated inhibitory postsynaptic currents was depressed in medium spiny neurons of ethanol drinking mice. A history of ethanol drinking also increased ethanol preference and altered the acute ethanol effects on GABAergic transmission differentially in dorsolateral and dorsomedial striatum. Together, the study shows that the bottle exchange during DID promotes fast, voluntary ethanol drinking and that this intermittent pattern of ethanol drinking causes a depression of GABAergic transmission in the dorsal striatum. PMID:23995582

  10. The Bangla clubfoot tool: a repeatability study.

    PubMed

    Evans, Angela Margaret; Perveen, Roksana; Ford-Powell, Vikki A; Barker, Simon

    2014-01-01

    'Walk for Life' (WFL) is the sustainable clubfoot program in Bangladesh, where there are many challenges in implementing the Ponseti technique in a poor and highly populated country. The relapsing tendency of congenital clubfoot deformity means that initial results may well differ from those of the medium and longer term. Over 10000 children with16668 clubfeet have been treated by WFL since its inception in 2009. Such a large project provides both the need to evaluate each individual child's case, and also the opportunity to evaluate the wider WFL program results. Such systematic review requires a measure that is sufficiently robust, yet contextually practical, hence the aim of this work was to develop a tool for this purpose, and to report the examiner reliability. The Bangla clubfoot tool was largely developed from components of existing validated clubfoot assessment measures, and adapted for local use. Three areas of examination are included: parent satisfaction, gait, clinical examination of the clubfoot. A same-subject repeated measures study design was used to assess the intra-rater reliability of a local WFL physiotherapist, and a visiting WFL volunteer. The inter-rater reliability was also assessed, which is relevant for other examiners and other clubfoot projects undertaking evaluation of medium and longer term results. The reliability study was conducted in 37 children who had commenced treatment for congenital clubfoot deformity using Ponseti method within the previous two years. The mean age of the children was 2.6 years, with gender 28 male: 9 female. The intra-rater reliability results [ICCs (95% CI)] were: 0.87 (0.76 - 0.93) for the local WFL examiner, and 0.82 (0.64 - 0.91) for the visiting examiner. Inter-rater reliability results [ICCs (95% CI)] were: 0.92 (0.88 - 0.96). Hence the tool showed very good intra-rater and inter-rater reliability, rendering it suitable for use. The Bangla clubfoot tool has been developed to suit the context of the

  11. The Bangla clubfoot tool: a repeatability study

    PubMed Central

    2014-01-01

    Background ‘Walk for Life’ (WFL) is the sustainable clubfoot program in Bangladesh, where there are many challenges in implementing the Ponseti technique in a poor and highly populated country. The relapsing tendency of congenital clubfoot deformity means that initial results may well differ from those of the medium and longer term. Over 10000 children with16668 clubfeet have been treated by WFL since its inception in 2009. Such a large project provides both the need to evaluate each individual child’s case, and also the opportunity to evaluate the wider WFL program results. Such systematic review requires a measure that is sufficiently robust, yet contextually practical, hence the aim of this work was to develop a tool for this purpose, and to report the examiner reliability. Methods The Bangla clubfoot tool was largely developed from components of existing validated clubfoot assessment measures, and adapted for local use. Three areas of examination are included: parent satisfaction, gait, clinical examination of the clubfoot. A same-subject repeated measures study design was used to assess the intra-rater reliability of a local WFL physiotherapist, and a visiting WFL volunteer. The inter-rater reliability was also assessed, which is relevant for other examiners and other clubfoot projects undertaking evaluation of medium and longer term results. Results The reliability study was conducted in 37 children who had commenced treatment for congenital clubfoot deformity using Ponseti method within the previous two years. The mean age of the children was 2.6 years, with gender 28 male: 9 female. The intra-rater reliability results [ICCs (95% CI)] were: 0.87 (0.76 – 0.93) for the local WFL examiner, and 0.82 (0.64 – 0.91) for the visiting examiner. Inter-rater reliability results [ICCs (95% CI)] were: 0.92 (0.88 – 0.96). Hence the tool showed very good intra-rater and inter-rater reliability, rendering it suitable for use. Conclusions The Bangla clubfoot tool

  12. Repeated Reading. What Works Clearinghouse Intervention Report

    ERIC Educational Resources Information Center

    What Works Clearinghouse, 2014

    2014-01-01

    "Repeated reading" is an academic practice that aims to increase oral reading fluency. "Repeated reading" can be used with students who have developed initial word reading skills but demonstrate inadequate reading fluency for their grade level. During "repeated reading," a student sits in a quiet location with a…

  13. Evolution of Protein Domain Repeats in Metazoa

    PubMed Central

    Schüler, Andreas; Bornberg-Bauer, Erich

    2016-01-01

    Repeats are ubiquitous elements of proteins and they play important roles for cellular function and during evolution. Repeats are, however, also notoriously difficult to capture computationally and large scale studies so far had difficulties in linking genetic causes, structural properties and evolutionary trajectories of protein repeats. Here we apply recently developed methods for repeat detection and analysis to a large dataset comprising over hundred metazoan genomes. We find that repeats in larger protein families experience generally very few insertions or deletions (indels) of repeat units but there is also a significant fraction of noteworthy volatile outliers with very high indel rates. Analysis of structural data indicates that repeats with an open structure and independently folding units are more volatile and more likely to be intrinsically disordered. Such disordered repeats are also significantly enriched in sites with a high functional potential such as linear motifs. Furthermore, the most volatile repeats have a high sequence similarity between their units. Since many volatile repeats also show signs of recombination, we conclude they are often shaped by concerted evolution. Intriguingly, many of these conserved yet volatile repeats are involved in host-pathogen interactions where they might foster fast but subtle adaptation in biological arms races. Key Words: protein evolution, domain rearrangements, protein repeats, concerted evolution. PMID:27671125

  14. Does Repeating a Year Improve Performance? The Case of Teaching English

    ERIC Educational Resources Information Center

    Morrison, Keith; No, Anna Ieong On

    2007-01-01

    This paper examines whether having school students repeat a year improves their performance, focusing on learning English as a foreign language. It takes students' English examination results from five years from a Chinese-medium school, together with data on their learning styles and learning strategies. Drawing on local cultural and pedagogic…

  15. Source Parameters for Repeating Earthquakes along the Middle America Trench

    NASA Astrophysics Data System (ADS)

    Bilek, S. L.; Phillips, W. S.; Walter, J. I.; Peng, Z.; Schwartz, S. Y.; Brudzinski, M. R.; Yao, D.

    2015-12-01

    Repeating earthquakes, with their similar locations and similar waveforms, are often thought to represent slip along the same patch of fault. Analysis of these earthquake clusters can provide useful information about the nature of the fault and earthquake interaction. Here we focus on sequences of repeating earthquakes along both the Nicoya Peninsula, Costa Rica and along the Oaxaca segment of Mexico, as both megathrust faults have been well instrumented in recent years with local seismic networks able to record the small magnitude earthquakes. These regions have also experienced large megathrust earthquakes as well as non-volcanic tremor and slow slip, suggesting a complex fault system that allows a wide spectrum of slip. We can use source characteristics of the repeating earthquakes to probe this fault complexity. Along the Nicoya Peninsula, there are over 370 repeating earthquakes (M 0.5-3.3) in the 3 months following the 2012 Mw 7.6 megathrust earthquake grouped into 55 distinct clusters. Along Oaxaca, the earthquake clusters or swarms (M 1.5-5.5) span a wider spatial and temporal range. For our source parameter calculations, we form narrow-frequency band envelopes for pairs of earthquakes within the earthquake clusters to compute spectral ratios for each pair. We determine seismic moment, corner frequency, and earthquake stress drop for each earthquake from these spectral ratios. We compare the source parameters for events within the clusters to examine temporal variations and compare between clusters to explore spatial variations that could be linked to other slip heterogeneity. Preliminary results for the Nicoya region suggest nearly identical stress drop for repeating events within clusters located near the 2012 mainshock, and more variability in stress drops for earthquakes in clusters located updip and to the northwest of the mainshock.

  16. Two-dimensional quantum repeaters

    NASA Astrophysics Data System (ADS)

    Wallnöfer, J.; Zwerger, M.; Muschik, C.; Sangouard, N.; Dür, W.

    2016-11-01

    The endeavor to develop quantum networks gave rise to a rapidly developing field with far-reaching applications such as secure communication and the realization of distributed computing tasks. This ultimately calls for the creation of flexible multiuser structures that allow for quantum communication between arbitrary pairs of parties in the network and facilitate also multiuser applications. To address this challenge, we propose a two-dimensional quantum repeater architecture to establish long-distance entanglement shared between multiple communication partners in the presence of channel noise and imperfect local control operations. The scheme is based on the creation of self-similar multiqubit entanglement structures at growing scale, where variants of entanglement swapping and multiparty entanglement purification are combined to create high-fidelity entangled states. We show how such networks can be implemented using trapped ions in cavities.

  17. Linear Synchronous Motor Repeatability Tests

    SciTech Connect

    Ward, C.R.

    2002-10-18

    A cart system using linear synchronous motors was being considered for the Plutonium Immobilization Plant (PIP). One of the applications in the PIP was the movement of a stack of furnace trays, filled with the waste form (pucks) from a stacking/unstacking station to several bottom loaded furnaces. A system was ordered to perform this function in the PIP Ceramic Prototype Test Facility (CPTF). This system was installed and started up in SRTC prior to being installed in the CPTF. The PIP was suspended and then canceled after the linear synchronous motor system was started up. This system was used to determine repeatability of a linear synchronous motor cart system for the Modern Pit Facility.

  18. Repeated episodes of endosulfan poisoning.

    PubMed

    Dewan, Aruna; Bhatnagar, Vijay K; Mathur, Murli L; Chakma, Tapas; Kashyap, Rekha; Sadhu, Harsiddha G; Sinha, Sukesh N; Saiyed, Habibullah N

    2004-01-01

    A number of families in a rural area of Jabalpur District (Madhya Pradesh), India, were affected by repeated episodes of convulsive illness over a period of three weeks. The aim of this investigation was to determine the cause of the illness. The investigation included a house-to-house survey, interviews of affected families, discussions with treating physicians, and examination of hospital records. Endosulfan poisoning was suspected as many villagers were using empty pesticide containers for food storage. To confirm this, our team collected blood and food samples, which were transported to the laboratory and analyzed with GC-ECD. Thirty-six persons of all age groups had illness of varying severity over a period of three weeks. In the first week, due to superstitions and lack of treatment, three children died. In the second week, symptomatic treatment of affected persons in a district hospital led to recovery but recurrence of convulsive episodes occurred after the return home. In the third week, 10 people were again hospitalized in a teaching hospital. Investigations carried out in this hospital ruled out infective etiology but no facilities were available for chemical analysis. All persons responded to symptomatic treatment. The blood and food samples analyzed by our team showed presence of endosulfan, which was confirmed by GCMS. One of the food items (Laddu) prepared from wheat flour was found to contain 676 ppm of alpha-endosulfan. Contamination of wheat grains or flour with endosulfan and its consumption over a period of time was the most likely cause of repeated episodes of convulsions, but the exact reason for this contamination could not be determined. This report highlights the unsafe disposal of pesticide containers by illiterate farm workers, superstitions leading to delay in treatment, and susceptibility of children to endosulfan.

  19. Learning in repeated visual search

    PubMed Central

    Hout, Michael C.; Goldinger, Stephen D.

    2014-01-01

    Visual search (e.g., finding a specific object in an array of other objects) is performed most effectively when people are able to ignore distracting nontargets. In repeated search, however, incidental learning of object identities may facilitate performance. In three experiments, with over 1,100 participants, we examined the extent to which search could be facilitated by object memory and by memory for spatial layouts. Participants searched for new targets (real-world, nameable objects) embedded among repeated distractors. To make the task more challenging, some participants performed search for multiple targets, increasing demands on visual working memory (WM). Following search, memory for search distractors was assessed using a surprise two-alternative forced choice recognition memory test with semantically matched foils. Search performance was facilitated by distractor object learning and by spatial memory; it was most robust when object identity was consistently tied to spatial locations and weakest (or absent) when object identities were inconsistent across trials. Incidental memory for distractors was better among participants who searched under high WM load, relative to low WM load. These results were observed when visual search included exhaustive-search trials (Experiment 1) or when all trials were self-terminating (Experiment 2). In Experiment 3, stimulus exposure was equated across WM load groups by presenting objects in a single-object stream; recognition accuracy was similar to that in Experiments 1 and 2. Together, the results suggest that people incidentally generate memory for nontarget objects encountered during search and that such memory can facilitate search performance. PMID:20601709

  20. Triplet repeat RNA structure and its role as pathogenic agent and therapeutic target

    PubMed Central

    Krzyzosiak, Wlodzimierz J.; Sobczak, Krzysztof; Wojciechowska, Marzena; Fiszer, Agnieszka; Mykowska, Agnieszka; Kozlowski, Piotr

    2012-01-01

    This review presents detailed information about the structure of triplet repeat RNA and addresses the simple sequence repeats of normal and expanded lengths in the context of the physiological and pathogenic roles played in human cells. First, we discuss the occurrence and frequency of various trinucleotide repeats in transcripts and classify them according to the propensity to form RNA structures of different architectures and stabilities. We show that repeats capable of forming hairpin structures are overrepresented in exons, which implies that they may have important functions. We further describe long triplet repeat RNA as a pathogenic agent by presenting human neurological diseases caused by triplet repeat expansions in which mutant RNA gains a toxic function. Prominent examples of these diseases include myotonic dystrophy type 1 and fragile X-associated tremor ataxia syndrome, which are triggered by mutant CUG and CGG repeats, respectively. In addition, we discuss RNA-mediated pathogenesis in polyglutamine disorders such as Huntington's disease and spinocerebellar ataxia type 3, in which expanded CAG repeats may act as an auxiliary toxic agent. Finally, triplet repeat RNA is presented as a therapeutic target. We describe various concepts and approaches aimed at the selective inhibition of mutant transcript activity in experimental therapies developed for repeat-associated diseases. PMID:21908410

  1. Repeat instability: mechanisms of dynamic mutations.

    PubMed

    Pearson, Christopher E; Nichol Edamura, Kerrie; Cleary, John D

    2005-10-01

    Disease-causing repeat instability is an important and unique form of mutation that is linked to more than 40 neurological, neurodegenerative and neuromuscular disorders. DNA repeat expansion mutations are dynamic and ongoing within tissues and across generations. The patterns of inherited and tissue-specific instability are determined by both gene-specific cis-elements and trans-acting DNA metabolic proteins. Repeat instability probably involves the formation of unusual DNA structures during DNA replication, repair and recombination. Experimental advances towards explaining the mechanisms of repeat instability have broadened our understanding of this mutational process. They have revealed surprising ways in which metabolic pathways can drive or protect from repeat instability.

  2. Large Torque Variations in Two Soft Gamma Repeaters

    NASA Technical Reports Server (NTRS)

    Woods, Peter M.; Kouveliotou, Chryssa; Gogus, Ersin; Finger, Mark H.; Swank, Jean; Markwardt, Craig B.; Hurley, Kevin; vanderKlis, Michiel

    2002-01-01

    We have monitored the pulse frequencies of the two soft gamma repeaters SGR 1806-20 and SGR 1900+14 through the beginning of year 2001 using primarily Rossi X-Ray Timing Explorer Proportional Counter Array observations. In both sources, we observe large changes in the spin-down torque up to a factor of approximately 4, which persist for several months. Using long-baseline phase-connected timing solutions as well as the overall frequency histories, we construct torque noise power spectra for each SGR (Soft Gamma Repeater). The power spectrum of each source is very red (power-law slope is approximately -3.5). The torque noise power levels are consistent with some accreting systems on timescales of approximately 1 yr, yet the full power spectrum is much steeper in frequency than any known accreting source. To the best of our knowledge, torque noise power spectra with a comparably steep frequency dependence have been seen only in young, glitching radio pulsars (e.g., Vela). The observed changes in spin-down rate do not correlate with burst activity; therefore, the physical mechanisms behind each phenomenon are also likely unrelated. Within the context of the magnetar model, seismic activity can not account for both the bursts and the long-term torque changes unless the seismically active regions are decoupled from one another.

  3. Large Torque Variations in Two Soft Gamma Repeaters

    NASA Technical Reports Server (NTRS)

    Woods, Peter M.; Kouveliotou, Chryssa; Gogus, Ersin; Finger, Mark H.; Swank, Jean; Markwardt, Craig B.; Hurley, Kevin; vanderKlis, Michiel

    2002-01-01

    We have monitored the pulse frequencies of the two soft gamma repeaters SGR 1806-20 and SGR 1900+14 through the beginning of year 2001 using primarily Rossi X-Ray Timing Explorer Proportional Counter Array observations. In both sources, we observe large changes in the spin-down torque up to a factor of approximately 4, which persist for several months. Using long-baseline phase-connected timing solutions as well as the overall frequency histories, we construct torque noise power spectra for each SGR (Soft Gamma Repeater). The power spectrum of each source is very red (power-law slope is approximately -3.5). The torque noise power levels are consistent with some accreting systems on timescales of approximately 1 yr, yet the full power spectrum is much steeper in frequency than any known accreting source. To the best of our knowledge, torque noise power spectra with a comparably steep frequency dependence have been seen only in young, glitching radio pulsars (e.g., Vela). The observed changes in spin-down rate do not correlate with burst activity; therefore, the physical mechanisms behind each phenomenon are also likely unrelated. Within the context of the magnetar model, seismic activity can not account for both the bursts and the long-term torque changes unless the seismically active regions are decoupled from one another.

  4. A Semiparametric Bayesian Model for Repeatedly Repeated Binary Outcomes

    PubMed Central

    Quintana, Fernando A.; Müller, Peter; Rosner, Gary L.; Relling, Mary V.

    2009-01-01

    Summary We discuss the analysis of data from single nucleotide polymorphism (SNP) arrays comparing tumor and normal tissues. The data consist of sequences of indicators for loss of heterozygosity (LOH) and involve three nested levels of repetition: chromosomes for a given patient, regions within chromosomes, and SNPs nested within regions. We propose to analyze these data using a semiparametric model for multi-level repeated binary data. At the top level of the hierarchy we assume a sampling model for the observed binary LOH sequences that arises from a partial exchangeability argument. This implies a mixture of Markov chains model. The mixture is defined with respect to the Markov transition probabilities. We assume a nonparametric prior for the random mixing measure. The resulting model takes the form of a semiparametric random effects model with the matrix of transition probabilities being the random effects. The model includes appropriate dependence assumptions for the two remaining levels of the hierarchy, i.e., for regions within chromosomes and for chromosomes within patient. We use the model to identify regions of increased LOH in a dataset coming from a study of treatment-related leukemia in children with an initial cancer diagnostic. The model successfully identifies the desired regions and performs well compared to other available alternatives. PMID:19746193

  5. Repeatability of Electromyographic Waveforms During the Naeryo Chagi in Taekwondo

    PubMed Central

    Aggeloussis, Nickos; Gourgoulis, Vassilis; Sertsou, Maria; Giannakou, Erasmia; Mavromatis, George

    2007-01-01

    The purpose of the research was to study the repeatability of electromyographic (EMG) waveforms of major lower limb muscles during the naeryo chagi (axe kick) in taekwondo. Six male and female athletes, aged between 20 and 24 years served as volunteers. All participants were black belt holders and performed the naeryo chagi with their right leg. The electromyographic activity of rectus femoris, biceps femoris, gastrocnemius lateralis and tibialis anterior was recorded during the kick through four preamplified surface electrodes. The participants preformed 10 successive kicks to a fixed target with 1 min inter-trial interval. The electromyograms were recorded during each kick at a sampling frequency of 1000Hz. After the processing of the raw EMG data, myoelectrical activity was normalized on the time and amplitude domain. The coefficient of variation (CV), intra-class correlation coefficient (ICC) and coefficient of multiple correlation (CMC) were computed to test the repeatability of the electromyographic waveforms in each participant. The electromyographic activity during the naeryo chagi demonstrated poor repeatability. More specifically, all CVs were greater than 80%, all CMCs were lower than 0.75 and the majority of the average measure ICCs as well as all single measure ICCs were lower than 0.55. It seemed that only ensemble averages of EMG waveforms obtained from more than ten kicks may be considered as representatives of the muscle function in naeryo chagi and conclusions that have been drawn from a single trial should be reconsidered. Key points The paper is the only known paper focused on the EMG repeatability of a taekwondo kick (naeryo chagi). The paper is among the few papers of repeatability dealing with the whole EMG waveforms and not with discrete EMG parameters. Repeatability was tested using all the available statistical indices. The results suggested that conclusions drawn from a single trial in EMG studies of taekwondo kicks and probably in other

  6. Fluctuation-dissipation relation in a resonantly driven quantum medium.

    PubMed

    Erukhimova, Maria; Tokman, Mikhail

    2015-06-15

    Noise associated with the spontaneous emission in a coherently driven medium is calculated. The significant field-induced modification of relation between the noise power and damping constant in a thermal reservoir is obtained. The nonlinear noise exchange between different atomic frequencies leads to violation of standard relations dictated by the fluctuation-dissipation theorem. The developed general method is applied to the EIT system, attractive for realization of different quantum-information processing devices. It is shown that there is a significant factor defining the thermal noise at operating frequency in the EIT system. It is the averaged number of thermal photons at low frequency of ground state splitting.

  7. Power enhanced frequency conversion system

    NASA Technical Reports Server (NTRS)

    Sanders, Steven (Inventor); Lang, Robert J. (Inventor); Waarts, Robert G. (Inventor)

    2001-01-01

    A frequency conversion system includes at least one source providing a first near-IR wavelength output including a gain medium for providing high power amplification, such as double clad fiber amplifier, a double clad fiber laser or a semiconductor tapered amplifier to enhance the power output level of the near-IR wavelength output. The NFM device may be a difference frequency mixing (DFM) device or an optical parametric oscillation (OPO) device. Pump powers are gain enhanced by the addition of a rare earth amplifier or oscillator, or a Ra-man/Brillouin amplifier or oscillator between the high power source and the NFM device.

  8. Genetic Contributors to Intergenerational CAG Repeat Instability in Huntington’s Disease Knock-In Mice

    PubMed Central

    Neto, João Luís; Lee, Jong-Min; Afridi, Ali; Gillis, Tammy; Guide, Jolene R.; Dempsey, Stephani; Lager, Brenda; Alonso, Isabel; Wheeler, Vanessa C.; Pinto, Ricardo Mouro

    2017-01-01

    Huntington’s disease (HD) is a neurodegenerative disorder caused by the expansion of a CAG trinucleotide repeat in exon 1 of the HTT gene. Longer repeat sizes are associated with increased disease penetrance and earlier ages of onset. Intergenerationally unstable transmissions are common in HD families, partly underlying the genetic anticipation seen in this disorder. HD CAG knock-in mouse models also exhibit a propensity for intergenerational repeat size changes. In this work, we examine intergenerational instability of the CAG repeat in over 20,000 transmissions in the largest HD knock-in mouse model breeding datasets reported to date. We confirmed previous observations that parental sex drives the relative ratio of expansions and contractions. The large datasets further allowed us to distinguish effects of paternal CAG repeat length on the magnitude and frequency of expansions and contractions, as well as the identification of large repeat size jumps in the knock-in models. Distinct degrees of intergenerational instability were observed between knock-in mice of six background strains, indicating the occurrence of trans-acting genetic modifiers. We also found that lines harboring a neomycin resistance cassette upstream of Htt showed reduced expansion frequency, indicative of a contributing role for sequences in cis, with the expanded repeat as modifiers of intergenerational instability. These results provide a basis for further understanding of the mechanisms underlying intergenerational repeat instability. PMID:27913616

  9. Genetic Contributors to Intergenerational CAG Repeat Instability in Huntington's Disease Knock-In Mice.

    PubMed

    Neto, João Luís; Lee, Jong-Min; Afridi, Ali; Gillis, Tammy; Guide, Jolene R; Dempsey, Stephani; Lager, Brenda; Alonso, Isabel; Wheeler, Vanessa C; Pinto, Ricardo Mouro

    2017-02-01

    Huntington's disease (HD) is a neurodegenerative disorder caused by the expansion of a CAG trinucleotide repeat in exon 1 of the HTT gene. Longer repeat sizes are associated with increased disease penetrance and earlier ages of onset. Intergenerationally unstable transmissions are common in HD families, partly underlying the genetic anticipation seen in this disorder. HD CAG knock-in mouse models also exhibit a propensity for intergenerational repeat size changes. In this work, we examine intergenerational instability of the CAG repeat in over 20,000 transmissions in the largest HD knock-in mouse model breeding datasets reported to date. We confirmed previous observations that parental sex drives the relative ratio of expansions and contractions. The large datasets further allowed us to distinguish effects of paternal CAG repeat length on the magnitude and frequency of expansions and contractions, as well as the identification of large repeat size jumps in the knock-in models. Distinct degrees of intergenerational instability were observed between knock-in mice of six background strains, indicating the occurrence of trans-acting genetic modifiers. We also found that lines harboring a neomycin resistance cassette upstream of Htt showed reduced expansion frequency, indicative of a contributing role for sequences in cis, with the expanded repeat as modifiers of intergenerational instability. These results provide a basis for further understanding of the mechanisms underlying intergenerational repeat instability.

  10. Medium for presumptive identification of Yersinia enterocolitica.

    PubMed

    Weagant, S D

    1983-02-01

    A medium, lysine-arginine-iron agar, was developed for the presumptive identification of Yersinia enterocolitica isolates. This medium was a modification of lysine-iron agar and allowed for the testing of five biochemical characteristics in a single tube medium. The reactions of Y. enterocolitica on this medium were reliable and distinctive. The medium significantly simplified the identification of Y. enterocolitica isolates.

  11. Biokinetics in repeated-dosing in vitro drug toxicity studies.

    PubMed

    Kramer, Nynke I; Di Consiglio, Emma; Blaauboer, Bas J; Testai, Emanuela

    2015-12-25

    The aim of the EU FP7 Predict-IV project was to improve the predictivity of in vitro assays for unwanted effects of drugs after repeated dosing. The project assessed the added benefit of integrating long-lived in vitro organotypic cell systems with 'omics' technologies and in silico modelling, including systems biology and pharmacokinetic assessments. RPTEC/TERT1 kidney cells, primary rat and human hepatocytes, HepaRG liver cells and 2D and 3D primary brain cultures were dosed daily or every other day for 14 days to a selection of drugs varying in their mechanism of pharmacological action. Since concentration-effect relationships not only depend on the activity of the drug or the sensitivity of the target, but also on the distribution of compounds in the in vitro system, the concentration of a selection of drugs in cells, microtitre plate plastic and medium was measured over time. Results, reviewed in this paper, indicate that lipophilic drugs bind significantly to plastic labware. A few drugs, including less lipophilic drugs, bind to cell-attachment matrices. Chemicals that reach high concentrations in cells, including cyclosporin A and amiodarone, significantly accumulate over time after repeated dosing, partly explaining their increased toxicity after repeated dosing, compared to a single dose. Copyright © 2015 Elsevier B.V. All rights reserved.

  12. Trinucleotide repeat expansion in the FRAXE locus is not common among institutionalized individuals with non-specific developmental disabilities

    SciTech Connect

    Holden, J.J.A.; Julien-Inalsingh, C.; Fidler, K.

    1996-08-09

    Expansion of a polymorphic GCC-repeat at the FRAXE locus has been associated with expression of chromosome fragility at this site and cognitive impairment in some individuals previously testing negative for CGG-repeat expansion in the fragile X mental retardation-1 (FMR1) gene. To determine the frequency of FRAXE triplet repeat expansion among persons with developmental disability, 396 individuals from two institutions were studied, all of whom were negative for FMR1 repeat expansion. Clinically, there was a wide range of mental impairment, with the majority (61.1%) being severely to profoundly affected. The distribution of FRAXE GCC-repeat numbers in the study population was 5-38:28 (5.6%) with 10-14 repeats; 366 (73.8%) with 15-19 repeats; 74 (14.9%) with 20-24 repeats; 20 (4.0%) with 25-29 repeats; and 5 (1.0%) with 30-38 repeats, with no individuals demonstrating repeat expansion. One profoundly retarded male was found to have a deletion of about 40 bp. Southern blots of HindIII-digested DNAs from individuals with {ge}26 repeats all showed normal patterns. These results suggest that FRAXE GCC-repeat expansion is not a common cause of developmental disability in institutionalized persons with mild to profound mental retardation. 15 refs., 1 fig., 2 tabs.

  13. Modeling Repeatedly Flaring δ Sunspots.

    PubMed

    Chatterjee, Piyali; Hansteen, Viggo; Carlsson, Mats

    2016-03-11

    Active regions (ARs) appearing on the surface of the Sun are classified into α, β, γ, and δ by the rules of the Mount Wilson Observatory, California on the basis of their topological complexity. Amongst these, the δ sunspots are known to be superactive and produce the most x-ray flares. Here, we present results from a simulation of the Sun by mimicking the upper layers and the corona, but starting at a more primitive stage than any earlier treatment. We find that this initial state consisting of only a thin subphotospheric magnetic sheet breaks into multiple flux tubes which evolve into a colliding-merging system of spots of opposite polarity upon surface emergence, similar to those often seen on the Sun. The simulation goes on to produce many exotic δ sunspot associated phenomena: repeated flaring in the range of typical solar flare energy release and ejective helical flux ropes with embedded cool-dense plasma filaments resembling solar coronal mass ejections.

  14. Modeling Repeatedly Flaring δ Sunspots

    NASA Astrophysics Data System (ADS)

    Chatterjee, Piyali; Hansteen, Viggo; Carlsson, Mats

    2016-03-01

    Active regions (ARs) appearing on the surface of the Sun are classified into α , β , γ , and δ by the rules of the Mount Wilson Observatory, California on the basis of their topological complexity. Amongst these, the δ sunspots are known to be superactive and produce the most x-ray flares. Here, we present results from a simulation of the Sun by mimicking the upper layers and the corona, but starting at a more primitive stage than any earlier treatment. We find that this initial state consisting of only a thin subphotospheric magnetic sheet breaks into multiple flux tubes which evolve into a colliding-merging system of spots of opposite polarity upon surface emergence, similar to those often seen on the Sun. The simulation goes on to produce many exotic δ sunspot associated phenomena: repeated flaring in the range of typical solar flare energy release and ejective helical flux ropes with embedded cool-dense plasma filaments resembling solar coronal mass ejections.

  15. Trinucleotide Repeats: A Structural Perspective

    PubMed Central

    Almeida, Bruno; Fernandes, Sara; Abreu, Isabel A.; Macedo-Ribeiro, Sandra

    2013-01-01

    Trinucleotide repeat (TNR) expansions are present in a wide range of genes involved in several neurological disorders, being directly involved in the molecular mechanisms underlying pathogenesis through modulation of gene expression and/or the function of the RNA or protein it encodes. Structural and functional information on the role of TNR sequences in RNA and protein is crucial to understand the effect of TNR expansions in neurodegeneration. Therefore, this review intends to provide to the reader a structural and functional view of TNR and encoded homopeptide expansions, with a particular emphasis on polyQ expansions and its role at inducing the self-assembly, aggregation and functional alterations of the carrier protein, which culminates in neuronal toxicity and cell death. Detail will be given to the Machado-Joseph Disease-causative and polyQ-containing protein, ataxin-3, providing clues for the impact of polyQ expansion and its flanking regions in the modulation of ataxin-3 molecular interactions, function, and aggregation. PMID:23801983

  16. Medium-Assisted Vacuum Force

    NASA Astrophysics Data System (ADS)

    Tomaš, M. S.

    We discuss some implications of a very recently obtained result for the force on a slab in a planar cavity based on the calculation of the vacuum Lorentz force [C.Raabe and D.-G. Welsch, Phys. Rev. A 71 (2005) 013814]. We demonstrate that, according to this formula, the total force on the slab consists of a medium-screened Casimir force and, in addition to it, a medium-assisted force. The sign of of the medium-assisted force is determined solely by the properties of the cavity mirrors. In the Lifshitz configuration, this force is proportional to 1/d at small distances and is very small compared with the corresponding van der Waals force. At large distances, however, it is proportional to 1/d4 and comparable with the Casimir force, especially for denser media. The exponents in these power laws decrease by 1 in the case of a thin slab. The formula for the medium-assisted force also describes the force on a layer of the cavity medium, which has similar properties. For dilute media, it implies an atom-mirror interaction of the Coulomb type at small and of the Casimir-Polder type at large atom-mirror distances. For a perfectly reflecting mirror, the latter force is effectively only three-times smaller than the Casimir-Polder force.

  17. TRDB—The Tandem Repeats Database

    PubMed Central

    Gelfand, Yevgeniy; Rodriguez, Alfredo; Benson, Gary

    2007-01-01

    Tandem repeats in DNA have been under intensive study for many years, first, as a consequence of their usefulness as genomic markers and DNA fingerprints and more recently as their role in human disease and regulatory processes has become apparent. The Tandem Repeats Database (TRDB) is a public repository of information on tandem repeats in genomic DNA. It contains a variety of tools for repeat analysis, including the Tandem Repeats Finder program, query and filtering capabilities, repeat clustering, polymorphism prediction, PCR primer selection, data visualization and data download in a variety of formats. In addition, TRDB serves as a centralized research workbench. It provides user storage space and permits collaborators to privately share their data and analysis. TRDB is available at . PMID:17175540

  18. Transformation-associated recombination between diverged and homologous DNA repeats is induced by strand breaks

    SciTech Connect

    Larionov, V.; Kouprina, N. |; Edlarov, M. |; Perkins, E.; Porter, G.; Resnick, M.A.

    1993-12-31

    Rearrangement and deletion within plasmid DNA is commonly observed during transformation. We have examined the mechanisms of transformation-associated recombination in the yeast Saccharomyces cerevisiae using a plasmid system which allowed the effects of physical state and/or extent of homology on recombination to be studied. The plasmid contains homologous or diverged (19%) DNA repeats separated by a genetically detectable color marker. Recombination during transformation for covalently closed circular plasmids was over 100-fold more frequent than during mitotic growth. The frequency of recombination is partly dependent on the method of transformation in that procedures involving lithium acetate or spheroplasting yield higher frequencies than electroporation. When present in the repeats, unique single-strand breaks that are ligatable, as well as double-strand breaks, lead to high levels of recombination between diverged and identical repeats. The transformation-associated recombination between repeat DNA`s is under the influence of the RADS2, RADI and the RNCI genes,

  19. SGR-like behaviour of the repeating FRB 121102

    NASA Astrophysics Data System (ADS)

    Wang, F. Y.; Yu, H.

    2017-03-01

    Fast radio bursts (FRBs) are millisecond-duration radio signals occurring at cosmological distances. However the physical model of FRBs is mystery, many models have been proposed. Here we study the frequency distributions of peak flux, fluence, duration and waiting time for the repeating FRB 121102. The cumulative distributions of peak flux, fluence and duration show power-law forms. The waiting time distribution also shows power-law distribution, and is consistent with a non-stationary Poisson process. These distributions are similar as those of soft gamma repeaters (SGRs). We also use the statistical results to test the proposed models for FRBs. These distributions are consistent with the predictions from avalanche models of slowly driven nonlinear dissipative systems.

  20. Repeated Witnessing of Conspecifics in Pain: Effects on Emotional Contagion

    PubMed Central

    Bruls, Rune; Han, Yingying; Heinemans, Mirjam; Pruis, Ilanah; Gazzola, Valeria; Keysers, Christian

    2015-01-01

    Witnessing of conspecifics in pain has been shown to elicit socially triggered freezing in rodents. It is unknown how robust this response is to repeated exposure to a cage-mate experiencing painful stimulation. To address this question, shock-experienced Observer rats repeatedly witnessed familiar Demonstrators receive painful footshocks (six sessions). Results confirm that Observers freeze during the first testing session. The occurrence of this behaviour however gradually diminished as the experimental sessions progressed, reaching minimal freezing levels by the end of the experiments. In contrast, the appearance and continuous increase in the frequency of yawning, a behavior that was inhibited by metyrapone (i.e,. a glucocorticoid synthesis blocker), might represent an alternative coping strategy, suggesting that the observer’s reduced freezing does not necessarily indicate a disappearance in the affective response to the Demonstrator’s distress. PMID:26356506

  1. Short Tandem Repeat DNA Internet Database

    National Institute of Standards and Technology Data Gateway

    SRD 130 Short Tandem Repeat DNA Internet Database (Web, free access)   Short Tandem Repeat DNA Internet Database is intended to benefit research and application of short tandem repeat DNA markers for human identity testing. Facts and sequence information on each STR system, population data, commonly used multiplex STR systems, PCR primers and conditions, and a review of various technologies for analysis of STR alleles have been included.

  2. Understanding and identifying amino acid repeats

    PubMed Central

    Nijveen, Harm

    2014-01-01

    Amino acid repeats (AARs) are abundant in protein sequences. They have particular roles in protein function and evolution. Simple repeat patterns generated by DNA slippage tend to introduce length variations and point mutations in repeat regions. Loss of normal and gain of abnormal function owing to their variable length are potential risks leading to diseases. Repeats with complex patterns mostly refer to the functional domain repeats, such as the well-known leucine-rich repeat and WD repeat, which are frequently involved in protein–protein interaction. They are mainly derived from internal gene duplication events and stabilized by ‘gate-keeper’ residues, which play crucial roles in preventing inter-domain aggregation. AARs are widely distributed in different proteomes across a variety of taxonomic ranges, and especially abundant in eukaryotic proteins. However, their specific evolutionary and functional scenarios are still poorly understood. Identifying AARs in protein sequences is the first step for the further investigation of their biological function and evolutionary mechanism. In principle, this is an NP-hard problem, as most of the repeat fragments are shaped by a series of sophisticated evolutionary events and become latent periodical patterns. It is not possible to define a uniform criterion for detecting and verifying various repeat patterns. Instead, different algorithms based on different strategies have been developed to cope with different repeat patterns. In this review, we attempt to describe the amino acid repeat-detection algorithms currently available and compare their strategies based on an in-depth analysis of the biological significance of protein repeats. PMID:23418055

  3. Visual Scan Adaptation During Repeated Visual Search

    DTIC Science & Technology

    2010-01-01

    repeated distractor –target configurations both require environmental stability. For stable distractor – target configurations, Chun and Jiang (1998) have...demon- strated search time savings from repeating distractor –target configurations, and Song and Jiang (2005) demonstrated that as little as 25% of the...search environment (i.e., two distractor locations and the target location out of 12 total locations per trial) repeated from trial to trial resulted

  4. Experimental measurements of the coherent field resulting from the interaction of an ultrasonic shock wave with a multiple scattering medium

    NASA Astrophysics Data System (ADS)

    Viard, Nicolas; Gianmarinaro, Bruno; Derode, Arnaud; Barrière, Christophe

    2014-04-01

    Whereas multiple scattering and shock wave formation are known to be antagonistic phenomena, this work concentrates on the interaction of an ultrasonic shock wave with a random multiple scattering medium. The shock wave is generated by long distance propagation of a short pulse (4 periods at a 3.5 MHz central frequency) in water before it encounters the scattering medium (a slab-shaped random set of parallel metallic rods). Transmitted waves are recorded over hundreds of positions along the lateral dimension of the slab to estimate the ensemble-averaged transmitted field langlephi(t)rangle, also known as the coherent wave. Experiments are repeated for different thicknesses L of the slab and different emission amplitudes. The elastic mean free path le (i.e the typical distance for the decreasing of the coherent intensity |langlephi(t)rangle|2 due to scattering) is determined as well as the harmonic rate of the averaged transmitted wave. Experimental results are discussed and compared to the linear case.

  5. Filamentation and fragmentation of radiation in a medium with saturable amplification and absorption

    SciTech Connect

    Rozanov, N.N.

    1994-10-01

    Analysis of stability of a plane monochromatic wave propagation in a medium with saturable amplification and absorption and frequency dispersion with respect to small spatial and temporal disturbances is performed. General expressions are obtained for the disturbance increments, and the estimates are presented for parameters of spatial and spatial-temporal solitons formed in the considered medium. 9 refs.

  6. An improved selective-repeat ARQ strategy

    NASA Astrophysics Data System (ADS)

    Weldon, E. J., Jr.

    1982-03-01

    ARQ is the term used for an automatic system which provides error correction by utilizing a constant ratio code and a closed loop to request retransmission of mutilated characters. A selective repeat strategy was described by Stuart (1963). In a selective-repeat ARQ system, blocks are numbered and ACKed (acknowledged) or NACKed by number. Practical selective-repeat ARQ procedures fall far short of channel capacity when the error probability is high. The present investigation is concerned with a new selective-repeat ARQ strategy, which is shown to be superior, with respect to its throughput, to earlier techniques.

  7. Short-Sequence DNA Repeats in Prokaryotic Genomes

    PubMed Central

    van Belkum, Alex; Scherer, Stewart; van Alphen, Loek; Verbrugh, Henri

    1998-01-01

    Short-sequence DNA repeat (SSR) loci can be identified in all eukaryotic and many prokaryotic genomes. These loci harbor short or long stretches of repeated nucleotide sequence motifs. DNA sequence motifs in a single locus can be identical and/or heterogeneous. SSRs are encountered in many different branches of the prokaryote kingdom. They are found in genes encoding products as diverse as microbial surface components recognizing adhesive matrix molecules and specific bacterial virulence factors such as lipopolysaccharide-modifying enzymes or adhesins. SSRs enable genetic and consequently phenotypic flexibility. SSRs function at various levels of gene expression regulation. Variations in the number of repeat units per locus or changes in the nature of the individual repeat sequences may result from recombination processes or polymerase inadequacy such as slipped-strand mispairing (SSM), either alone or in combination with DNA repair deficiencies. These rather complex phenomena can occur with relative ease, with SSM approaching a frequency of 10−4 per bacterial cell division and allowing high-frequency genetic switching. Bacteria use this random strategy to adapt their genetic repertoire in response to selective environmental pressure. SSR-mediated variation has important implications for bacterial pathogenesis and evolutionary fitness. Molecular analysis of changes in SSRs allows epidemiological studies on the spread of pathogenic bacteria. The occurrence, evolution and function of SSRs, and the molecular methods used to analyze them are discussed in the context of responsiveness to environmental factors, bacterial pathogenicity, epidemiology, and the availability of full-genome sequences for increasing numbers of microorganisms, especially those that are medically relevant. PMID:9618442

  8. Slow convergence to effective medium in finite discrete metamaterials

    NASA Astrophysics Data System (ADS)

    Lapine, M.; McPhedran, R. C.; Poulton, C. G.

    2016-06-01

    It is known that metamaterial properties may differ significantly from the predictions of effective-medium theory. In many cases this is due to the finite size and discrete structure, which cannot be neglected in practical samples with a relatively small amount of elements. We analyze the response of finite discrete metamaterial objects of a spherical shape and demonstrate the role of boundary effects in these structures, pointing out an interplay between the size of the structure and the dissipation. We conclude that the discrepancy between the actual resonance frequency of a sphere and the effective-medium prediction is inversely proportional to the size of the sphere.

  9. Properties of the nuclear medium.

    PubMed

    Baldo, M; Burgio, G F

    2012-02-01

    We review our knowledge on the properties of the nuclear medium that have been studied, over many years, on the basis of many-body theory, laboratory experiments and astrophysical observations. Throughout the presentation particular emphasis is placed on the possible relationship and links between the nuclear medium and the structure of nuclei, including the limitations of such an approach. First we consider the realm of phenomenological laboratory data and astrophysical observations and the hints they can give on the characteristics that the nuclear medium should possess. The analysis is based on phenomenological models, that however have a strong basis on physical intuition and an impressive success. More microscopic models are also considered, and it is shown that they are able to give invaluable information on the nuclear medium, in particular on its equation of state. The interplay between laboratory experiments and astrophysical observations is particularly stressed, and it is shown how their complementarity enormously enriches our insights into the structure of the nuclear medium. We then introduce the nucleon-nucleon interaction and the microscopic many-body theory of nuclear matter, with a critical discussion about the different approaches and their results. The Landau-Fermi liquid theory is introduced and briefly discussed, and it is shown how fruitful it can be in discussing the macroscopic and low-energy properties of the nuclear medium. As an illustrative example, we discuss neutron matter at very low density, and it is shown how it can be treated within the many-body theory. The general bulk properties of the nuclear medium are reviewed to indicate at which stage of our knowledge we stand, taking into account the most recent developments both in theory and experiments. A section is dedicated to the pairing problem. The connection with nuclear structure is then discussed, on the basis of the energy density functional method. The possibility of linking

  10. The Influence of Primary and Secondary DNA Structure in Deletion and Duplication between Direct Repeats in Escherichia Coli

    PubMed Central

    Trinh, T. Q.; Sinden, R. R.

    1993-01-01

    We describe a system to measure the frequency of both deletions and duplications between direct repeats. Short 17- and 18-bp palindromic and nonpalindromic DNA sequences were cloned into the EcoRI site within the chloramphenicol acetyltransferase gene of plasmids pBR325 and pJT7. This creates an insert between direct repeated EcoRI sites and results in a chloramphenicol-sensitive phenotype. Selection for chloramphenicol resistance was utilized to select chloramphenicol resistant revertants that included those with precise deletion of the insert from plasmid pBR325 and duplication of the insert in plasmid pJT7. The frequency of deletion or duplication varied more than 500-fold depending on the sequence of the short sequence inserted into the EcoRI site. For the nonpalindromic inserts, multiple internal direct repeats and the length of the direct repeats appear to influence the frequency of deletion. Certain palindromic DNA sequences with the potential to form DNA hairpin structures that might stabilize the misalignment of direct repeats had a high frequency of deletion. Other DNA sequences with the potential to form structures that might destabilize misalignment of direct repeats had a very low frequency of deletion. Duplication mutations occurred at the highest frequency when the DNA between the direct repeats contained no direct or inverted repeats. The presence of inverted repeats dramatically reduced the frequency of duplications. The results support the slippage-misalignment model, suggesting that misalignment occurring during DNA replication leads to deletion and duplication mutations. The results also support the idea that the formation of DNA secondary structures during DNA replication can facilitate and direct specific mutagenic events. PMID:8325478

  11. Modeling flow in a pressure-sensitive, heterogeneous medium

    SciTech Connect

    Vasco, Donald W.; Minkoff, Susan E.

    2009-06-01

    Using an asymptotic methodology, including an expansion in inverse powers of {radical}{omega}, where {omega} is the frequency, we derive a solution for flow in a medium with pressure dependent properties. The solution is valid for a heterogeneous medium with smoothly varying properties. That is, the scale length of the heterogeneity must be significantly larger then the scale length over which the pressure increases from it initial value to its peak value. The resulting asymptotic expression is similar in form to the solution for pressure in a medium in which the flow properties are not functions of pressure. Both the expression for pseudo-phase, which is related to the 'travel time' of the transient pressure disturbance, and the expression for pressure amplitude contain modifications due to the pressure dependence of the medium. We apply the method to synthetic and observed pressure variations in a deforming medium. In the synthetic test we model one-dimensional propagation in a pressure-dependent medium. Comparisons with both an analytic self-similar solution and the results of a numerical simulation indicate general agreement. Furthermore, we are able to match pressure variations observed during a pulse test at the Coaraze Laboratory site in France.

  12. Effect of repeated burning on plant and soil carbon and nitrogen in cheatgrass (Bromus tectorum) dominated ecosystems

    Treesearch

    Rachel Jones; Jeanne C. Chambers; Dale W. Johnson; Robert R. Blank; David I. Board

    2015-01-01

    Fire has profound effects on ecosystem properties, but few studies have addressed the effect of repeated burns on soil nutrients, and none have been conducted in cold desert ecosystems where invasion by exotic annual grasses is resulting in greater fire frequency. In a 5 year study, we examined effects of repeated burning, litter removal, and post-fire seeding on...

  13. The effect of an official match on repeated sprint ability in junior basketball players.

    PubMed

    Caprino, Davide; Clarke, Neil David; Delextrat, Anne

    2012-01-01

    The aim of this study was to investigate the effect of an official basketball match on repeated sprint ability indices in male junior players. Ten (16 ± 1 years old; 183.6 ± 7.0 cm; 76.6 ± 8.0 kg) starting players for their teams performed three repeated sprint ability tests, before, at half-time and immediately after an official match. Each repeated sprint ability test consisted of 10 shuttle-run sprints of 30 m (15 + 15 m) separated by 30 seconds of passive recovery. The matches were video-taped to determine the frequency of eight types of movement patterns, and blood lactate concentration was measured before and immediately after each repeated sprint ability test. Differences in total time, ideal time and percentage decrement between tests was assessed by a one-way analysis of variance (ANOVA) with repeated measures, while a two-way ANOVA with repeated measures was used to identify differences in blood lactate concentration. The main results indicated a significant decrease in total movement frequency (-9.9%), high-intensity activity frequency (-13.3%), run frequency (-13.0%) and sprint frequency (-23.3%) in the second compared to the first half, and significantly worse total time and ideal time at the end of the match, compared to the start and half-time (differences ranging from -2.1% to -2.9%, P < 0.05). The practical implications of these findings suggest that regional basketball players should participate in conditioning sessions that focus on the improvement of repeated sprint ability.

  14. Sterile Culture of Rotylenchulus reniformis on Tomato Root with Gellan Gum as a Supporting Medium

    PubMed Central

    Eyre, Melissa J.; Caswell, Edward P.

    1991-01-01

    Rotylenchulus reniformis was repeatedly propagated in sterile excised tomato roots growing on modified White's medium with gellan gum as the support. Gellan gum provided an optically clear support medium that could be liquified by adding 5 mM disodium ethylenediaminetetraacetate (EDTA) to facilitate nematode extraction. Liquefaction of the gellan-gum medium by EDTA allowed efficient recovery of eggs and vermiform stages of R. reniformis. Extraction efficiency was quantified with Radopholus similis as a test organism. The efficiency of extracting R. similis from the gellan gum did not vary with the concentrations of EDTA tested. PMID:19283117

  15. Sterile Culture of Rotylenchulus reniformis on Tomato Root with Gellan Gum as a Supporting Medium.

    PubMed

    Eyre, M J; Caswell, E P

    1991-04-01

    Rotylenchulus reniformis was repeatedly propagated in sterile excised tomato roots growing on modified White's medium with gellan gum as the support. Gellan gum provided an optically clear support medium that could be liquified by adding 5 mM disodium ethylenediaminetetraacetate (EDTA) to facilitate nematode extraction. Liquefaction of the gellan-gum medium by EDTA allowed efficient recovery of eggs and vermiform stages of R. reniformis. Extraction efficiency was quantified with Radopholus similis as a test organism. The efficiency of extracting R. similis from the gellan gum did not vary with the concentrations of EDTA tested.

  16. Meiotic stability and polymorphism of CAG repeat in normal chromosome at SCA1 locus

    SciTech Connect

    Limprasert, P.; Nouri, N.; Keats, B.J.B.

    1994-09-01

    Spinocerebellar ataxia type 1 (SCA1) is an autosomal dominant neurodegenerative disorder associated with an unstable and expanded CAG repeat. We analyzed the CAG repeat in normal chromosomes from various sources including SCA1 and nonSCA1 families, and Caucasian, African American, Eskimo, South American Indian and Acadian populations. The range of CAG repeats is 10-37 in normal alleles while the disease allele contains 45-65 repeats in our studies. To determine unbiased normal allelic frequencies, we analyzed data from unrelated individuals in each group. The significance of differences in allelic frequencies among the groups was determined by a chi-square test. Caucasian and Acadian frequencies were similar (p = 0.23), but highly significant differences were found among the Caucasians, African Americans, Eskimos, and South American Indians (p < 0.0005), and the range of allele sizes was much narrower in Eskimos and South American Indians. To determine if the normal chromosome is susceptible to meiotic instability, we examined members of 19 Caucasian and 24 Acadian families. Normal sized CAG repeats were faithfully transmitted from parents to offspring without any alteration in CAG number in 236 meioses. Transmission of CAG repeats in normal alleles were also stable in our SCA1 family. However, the disease allele was associated with a significant degree of instability. Some patients showed 2 expanded bands in DNA prepared from untransformed blood cells. This finding suggest mitotic instability of the disease allele.

  17. About wave field modeling in hierarchic medium with fractal inclusions

    NASA Astrophysics Data System (ADS)

    Hachay, Olga; Khachay, Andrey

    2014-05-01

    The processes of oil gaseous deposits outworking are linked with moving of polyphase multicomponent media, which are characterized by no equilibrium and nonlinear rheological features. The real behavior of layered systems is defined as complicated rheology moving liquids and structural morphology of porous media. It is eargently needed to account those factors for substantial description of the filtration processes. Additionally we must account also the synergetic effects. That allows suggesting new methods of control and managing of complicated natural systems, which can research these effects. Thus our research is directed to the layered system, from which we have to outwork oil and which is a complicated hierarchic dynamical system with fractal inclusions. In that paper we suggest the algorithm of modeling of 2-d seismic field distribution in the heterogeneous medium with hierarchic inclusions. Also we can compare the integral 2-D for seismic field in a frame of local hierarchic heterogeneity with a porous inclusion and pure elastic inclusion for the case when the parameter Lame is equal to zero for the inclusions and the layered structure. For that case we can regard the problem for the latitude and longitudinal waves independently. Here we shall analyze the first case. The received results can be used for choosing criterions of joined seismic methods for high complicated media research.If the boundaries of the inclusion of the k rank are fractals, the surface and contour integrals in the integral equations must be changed to repeated fractional integrals of Riman-Liuvill type .Using the developed earlier 3-d method of induction electromagnetic frequency geometric monitoring we showed the opportunity of defining of physical and structural features of hierarchic oil layer structure and estimating of water saturating by crack inclusions. For visualization we had elaborated some algorithms and programs for constructing cross sections for two hierarchic structural

  18. All repeats are not equal: a module-based approach to guide repeat protein design.

    PubMed

    Sawyer, Nicholas; Chen, Jieming; Regan, Lynne

    2013-05-27

    Repeat proteins composed of tandem arrays of a short structural motif often mediate protein-protein interactions. Past efforts to design repeat protein-based molecular recognition tools have focused on the creation of templates from the consensus of individual repeats, regardless of their natural context. Such an approach assumes that all repeats are essentially equivalent. In this study, we present the results of a "module-based" approach in which modules composed of tandem repeats are aligned to identify repeat-specific features. Using this approach to analyze tetratricopeptide repeat modules that contain three tandem repeats (3TPRs), we identify two classes of 3TPR modules with distinct structural signatures that are correlated with different sets of functional residues. Our analyses also reveal a high degree of correlation between positions across the entire ligand-binding surface, indicative of a coordinated, coevolving binding surface. Extension of our analyses to different repeat protein modules reveals more examples of repeat-specific features, especially in armadillo repeat modules. In summary, the module-based analyses that we present effectively capture key repeat-specific features that will be important to include in future repeat protein design templates.

  19. Review of hadrons in medium

    SciTech Connect

    Krein, Gastão

    2016-01-22

    I review the present status in the theoretical and phenomenological understanding of hadron properties in strongly interacting matter. The topics covered are the EMC effect, nucleon structure functions in cold nuclear matter, spectral properties of light vector mesons in hot and cold nuclear matter, and in-medium properties of heavy flavored hadrons.

  20. Energy loss by resonance line photons in an absorbing medium

    NASA Technical Reports Server (NTRS)

    Hummer, D. G.; Kunasz, P. B.

    1980-01-01

    The mean path length of photons undergoing repeated scatterings in media of large optical thickness is calculated from accurate numerical solutions of the transfer equation including the effect of frequency redistribution characteristic of combined Doppler and natural broadening. Energy loss by continuous absorption processes, such as ionization or dust absorption, is discussed, and asymptotic scaling laws for the energy loss, the mean path length, and the mean number of scatterings are inferred from the numerical data.

  1. Trinucleotide repeats associated with human disease.

    PubMed Central

    Mitas, M

    1997-01-01

    Triplet repeat expansion diseases (TREDs) are characterized by the coincidence of disease manifestation with amplification of d(CAG. CTG), d(CGG.CCG) or d(GAA.TTC) repeats contained within specific genes. Amplification of triplet repeats continues in offspring of affected individuals, which generally results in progressive severity of the disease and/or an earlier age of onset, phenomena clinically referred to as 'anticipation'. Recent biophysical and biochemical studies reveal that five of the six [d(CGG)n, d(CCG)n, (CAG)n, d(CTG)n and d(GAA)n] complementary sequences that are associated with human disease form stable hairpin structures. Although the triplet repeat sequences d(GAC)n and d(GTC)n also form hairpins, repeats of the double-stranded forms of these sequences are conspicuously absent from DNA sequence databases and are not anticipated to be associated with human disease. With the exception of d(GAG)n and d(GTG)n, the remaining triplet repeat sequences are unlikely to form hairpin structures at physiological salt and temperature. The details of hairpin structures containing trinucleotide repeats are summarized and discussed with respect to potential mechanisms of triplet repeat expansion and d(CGG.CCG) n methylation/demethylation. PMID:9171073

  2. Repeated Impact Method and Devices to Simulate the Impact Fatigue Property of Drillstring

    NASA Astrophysics Data System (ADS)

    Lin, Y. H.; Li, B.; Pan, J.; Li, Q.; Liu, W. Y.; Pan, Y.

    2017-05-01

    It is well known that drillstring failures are a pendent problem in drilling engineering, because of the fatigue accumulation caused by the low amplitude-repeated impact. In order to reveal the effect of low amplitude-repeated impact on the failure mechanism of the drillstring, a repeated impact method and instrument have been developed based on the Charpy impact method, by which a series of tests have been performed in the condition of non-corrosive medium and with H2S environment respective. Test results of non-corrosive medium environment indicates that, with the increase of single impact energy, the low amplitude-repeated impact resistance of drillstring decreases significantly; For H2S corrosion environment, the low amplitude-repeated impact resistances with H2S is much lower than that without H2S corrosion, and high strength material such as V-150 drillstring is more sensitive to H2S corrosion media. Furthermore, based on the experiment data, the accumulation fatigue model to predict the service life of the drillstring is developed, which could be used to predict the fatigue life. Research fruits are very vital to select a suitable rotational speed for drilling job and drillstring design.

  3. Reward modulation of contextual cueing: Repeated context overshadows repeated target location.

    PubMed

    Sharifian, Fariba; Contier, Oliver; Preuschhof, Claudia; Pollmann, Stefan

    2017-08-07

    Contextual cueing can be enhanced by reward. However, there is a debate if reward is associated with the repeated target-distractor configurations or with the repeated target locations that occur in both repeated and new displays. Based on neuroimaging evidence, we hypothesized that reward becomes associated with the target location only in new displays, but not in repeated displays, where the repeated target location is overshadowed by the more salient repeated target-distractor configuration. To test this hypothesis, we varied the reward value associated with the same target location in repeated and new displays. The results confirmed the overshadowing hypothesis in that search facilitation in repeated target-distractor configurations was modulated by the variable value associated with the target location. This effect was observed mainly in early learning.

  4. Frequency doubled, cavity dumped feedback laser

    NASA Technical Reports Server (NTRS)

    Sipes, Jr., Donald L. (Inventor); Robinson, Deborah L. (Inventor)

    1989-01-01

    Higher efficiency in cavity dumping and frequency doubling in a laser used to produce modulated output beam pulses is achieved by deflecting light out of the resonant cavity to a third mirror through a frequency doubler using an electro-optic modulator and a polarizing beamsplitter in the resonant cavity, or using just an acousto-optic modulator to deflect light out of the laser cavity in response to a control signal (electric or acoustic). The frequency doubler in front of the third mirror rotates the frequency doubled light so that it will pass out of the laser cavity through the polarizing beamsplitter, while undoubled frequency light is reflected by the polarizing beamsplitter back into the gain medium of the laser. In the case of using a type-II frequency doubler, a dichroic beamsplitter deflects out the frequency doubled light and passes the undoubled frequency light to the polarizing beamsplitter for return to the laser gain medium. If an acousto-optic modulator is used, it deflects light out of the primary laser cavity, so a polarizing beamsplitter is not needed, and only a dichroic beamsplitter is needed to separate frequency doubled light out of the path from the third mirror.

  5. Flow-induced compaction of a deformable porous medium

    NASA Astrophysics Data System (ADS)

    Hewitt, Duncan R.; Nijjer, Japinder S.; Worster, M. Grae; Neufeld, Jerome A.

    2016-02-01

    Fluid flowing through a deformable porous medium imparts viscous drag on the solid matrix, causing it to deform. This effect is investigated theoretically and experimentally in a one-dimensional configuration. The experiments consist of the downwards flow of water through a saturated pack of small, soft, hydrogel spheres, driven by a pressure head that can be increased or decreased. As the pressure head is increased, the effective permeability of the medium decreases and, in contrast to flow through a rigid medium, the flux of water is found to increase towards a finite upper bound such that it becomes insensitive to changes in the pressure head. Measurements of the internal deformation, extracted by particle tracking, show that the medium compacts differentially, with the porosity being lower at the base than at the upper free surface. A general theoretical model is derived, and the predictions of the model give good agreement with experimental measurements from a series of experiments in which the applied pressure head is sequentially increased. However, contrary to theory, all the experimental results display a distinct and repeatable hysteresis: the flux through the material for a particular applied pressure drop is appreciably lower when the pressure has been decreased to that value compared to when it has been increased to the same value.

  6. Flow-induced compaction of a deformable porous medium.

    PubMed

    Hewitt, Duncan R; Nijjer, Japinder S; Worster, M Grae; Neufeld, Jerome A

    2016-02-01

    Fluid flowing through a deformable porous medium imparts viscous drag on the solid matrix, causing it to deform. This effect is investigated theoretically and experimentally in a one-dimensional configuration. The experiments consist of the downwards flow of water through a saturated pack of small, soft, hydrogel spheres, driven by a pressure head that can be increased or decreased. As the pressure head is increased, the effective permeability of the medium decreases and, in contrast to flow through a rigid medium, the flux of water is found to increase towards a finite upper bound such that it becomes insensitive to changes in the pressure head. Measurements of the internal deformation, extracted by particle tracking, show that the medium compacts differentially, with the porosity being lower at the base than at the upper free surface. A general theoretical model is derived, and the predictions of the model give good agreement with experimental measurements from a series of experiments in which the applied pressure head is sequentially increased. However, contrary to theory, all the experimental results display a distinct and repeatable hysteresis: the flux through the material for a particular applied pressure drop is appreciably lower when the pressure has been decreased to that value compared to when it has been increased to the same value.

  7. An alternative bacteriological medium for the isolation of Aeromonas spp.

    USGS Publications Warehouse

    Jenkins, J.A.; Taylor, P.W.

    1995-01-01

    Two solid bacteriologic media were compared for cultivating Aeromonas spp. from piscine sources: the Rimler-Shotts (RS) medium and a starch-glutamate-ampicillin-penicillin-based medium (SGAP-10C) used for the recovery of Aeromonas spp. from water samples. The selective and differential capacities of the media were assessed March through October 1992 by recovery rate and phenotype of 99 isolates representing 15 genera of bacteria. Recovery frequency of Aeromonas spp. (n = 62) was similar at 97% on RS and 95% on SGAP-10C. The SGAP-10C medium proved to be more specific than RS toward Aeromonas species (P ≤ 0.005). Use of SGAP-10C at 24 C for 48 hr offers a better choice for the laboratory recovery of Aeromonas spp. from clinical fish specimens.

  8. On wave propagation in a random micropolar generalized thermoelastic medium

    NASA Astrophysics Data System (ADS)

    Mitra, Manindra; Bhattacharyya, Rabindra Kumar

    2017-06-01

    This paper endeavours to study aspects of wave propagation in a random generalized-thermal micropolar elastic medium. The smooth perturbation technique conformable to stochastic differential equations has been employed. Six different types of waves propagate in the random medium. The dispersion equations have been derived. The effects due to random variations of micropolar elastic and generalized thermal parameters have been computed. Randomness causes change of phase speed and attenuation of waves. Attenuation coefficients for high frequency waves have been computed. Second moment properties have been briefly discussed with application to wave propagation in the random micropolar elastic medium. Integrals involving correlation functions have been transformed to radial forms. A special type of generalized thermo-mechanical auto-correlation functions has been used to approximately compute effects of random variations of parameters. Uncoupled problem has been briefly outlined.

  9. Repeated Testing Produces Superior Transfer of Learning Relative to Repeated Studying

    ERIC Educational Resources Information Center

    Butler, Andrew C.

    2010-01-01

    The present research investigated whether test-enhanced learning can be used to promote transfer. More specifically, 4 experiments examined how repeated testing and repeated studying affected retention and transfer of facts and concepts. Subjects studied prose passages and then either repeatedly restudied or took tests on the material. One week…

  10. A Comparison of DWI Repeaters and Non-repeaters Who Attended a Level I Rehabilitation Program.

    ERIC Educational Resources Information Center

    Landrum, James W.; Windham, Gerald O.

    1981-01-01

    Compares behavioral and demographic characteristics of drunk drivers with repeated arrests and drivers not having repeated arrests, after attending an alcohol education program. Previous public drunkeness and previous drunk driving arrests were strong predictors of repeat arrests and were judged useful in screening offenders for rehabilitation…

  11. A Comparison of DWI Repeaters and Non-repeaters Who Attended a Level I Rehabilitation Program.

    ERIC Educational Resources Information Center

    Landrum, James W.; Windham, Gerald O.

    1981-01-01

    Compares behavioral and demographic characteristics of drunk drivers with repeated arrests and drivers not having repeated arrests, after attending an alcohol education program. Previous public drunkeness and previous drunk driving arrests were strong predictors of repeat arrests and were judged useful in screening offenders for rehabilitation…

  12. Low- to medium-β cavities for heavy ion acceleration

    NASA Astrophysics Data System (ADS)

    Facco, Alberto

    2017-02-01

    Acceleration of low- and medium-β heavy ions by means of superconducting (SC) linear accelerators (linacs) was made possible by the development, during four decades, of a particular class of cavities characterized by low operation frequency, several different shapes and different electromagnetic modes of operation. Their performance, initially rather poor in operating accelerators, have steadily increased along with the technological progress and nowadays the gap with the high-β, elliptical cavities is close to be filled. Initially confined to a very small number of applications, this family of cavities evolved in many directions becoming one of the most widespread in linacs. Nowadays it is present in the majority of superconducting radio-frequency ion linac projects worldwide. An overview of low- and medium-β SC cavities for heavy ions, focused on their recent evolution and achievements, will be given.

  13. Effects of Velocity on Electromyographic, Mechanomyographic, and Torque Responses to Repeated Eccentric Muscle Actions.

    PubMed

    Hill, Ethan C; Housh, Terry J; Camic, Clayton L; Smith, Cory M; Cochrane, Kristen C; Jenkins, Nathaniel D M; Cramer, Joel T; Schmidt, Richard J; Johnson, Glen O

    2016-06-01

    The purposes of this study were to examine the effects of the velocity of repeated eccentric muscle actions on the torque and neuromuscular responses during maximal isometric and eccentric muscle actions. Twelve resistance-trained men performed 30 repeated, maximal, eccentric, isokinetic muscle actions at randomly ordered velocities of 60, 120, or 180°·s on separate days. Maximal voluntary isometric contractions (MVICs) were performed before (pretest) and after (posttest) the repeated eccentric muscle actions on each day. Eccentric isokinetic peak torque (EIPT) values were the averages of the first 3 and last 3 repetitions of the 30 repeated eccentric muscle actions. During the EIPT and MVIC muscle actions, electromyographic (EMG) and mechanomyographic (MMG) amplitude (EMG AMP and MMG AMP) and mean power frequency (EMG MPF and MMG MPF) values were assessed. These results indicated that the repeated eccentric muscle actions had no effects on EIPT, or the EMG AMP, EMG MPF, or MMG MPF values assessed during the EIPT muscle actions, but decreased MMG AMP. The repeated eccentric muscle actions, however, decreased MVIC torque, and also the EMG AMP and MMG MPF values assessed during the MVIC muscle actions, but increased MMG AMP. The results indicated that the velocity of the repeated eccentric muscle actions affected the MVIC torque responses, but not EIPT or any of the neuromuscular parameters. Furthermore, there are differences in the torque and neuromuscular responses for isometric vs. eccentric muscle actions after repeated eccentric muscle actions.

  14. Absence of C9ORF72 expanded or intermediate repeats in autopsy confirmed Parkinson Disease

    PubMed Central

    NUYTEMANS, KAREN; INCHAUSTI, VANESSA; BEECHAM, GARY W.; WANG, LIYONG; DICKSON, DENNIS W.; TROJANOWSKI, JOHN Q.; LEE, VIRGINIA M.-Y.; MASH, DEBORAH C.; FROSCH, MATTHEW P.; FOROUD, TATIANA M.; HONIG, LAWRENCE S.; MONTINE, THOMAS J.; DAWSON, TED M.; MARTIN, EDEN R.; SCOTT, WILLIAM K.; VANCE, JEFFERY M.

    2014-01-01

    Background We have reported that intermediate repeat lengths of the C9ORF72 repeat are a risk factor for Parkinson Disease (PD) in a clinically- diagnosed dataset. As 10-25% of clinically diagnosed PD have different diagnoses upon autopsy, we hypothesized this may reflect phenotypic heterogeneity or concomitant pathology of other neurodegenerative disorders. Methods We screened 488 autopsy-confirmed PD cases for the expansion haplotype tag, rs3849942T. In 196 identified haplotype carriers, the C9ORF72 repeat was genotyped using the repeat-primed PCR assay. Results No larger (intermediate or expanded) repeats were found in these autopsy-confirmed PD samples. This absence of larger repeats is significantly different from the frequency in clinically-diagnosed datasets (p=0.002). Conclusions Our results suggest that expanded or intermediate C9ORF72 repeats in clinically-diagnosed PD or Parkinsonism might be an indication of heterogeneity in clinically-diagnosed PD cases. Further studies are needed to elucidate the potential contribution of the C9ORF72 repeat to autopsy-confirmed PD. PMID:24573903

  15. Absence of C9ORF72 expanded or intermediate repeats in autopsy-confirmed Parkinson's disease.

    PubMed

    Nuytemans, Karen; Inchausti, Vanessa; Beecham, Gary W; Wang, Liyong; Dickson, Dennis W; Trojanowski, John Q; Lee, Virginia M-Y; Mash, Deborah C; Frosch, Matthew P; Foroud, Tatiana M; Honig, Lawrence S; Montine, Thomas J; Dawson, Ted M; Martin, Eden R; Scott, William K; Vance, Jeffery M

    2014-05-01

    We have reported that intermediate repeat lengths of the C9ORF72 repeat are a risk factor for Parkinson's disease (PD) in a clinically diagnosed data set. Because 10% to 25% of clinically diagnosed PD have different diagnoses upon autopsy, we hypothesized that this may reflect phenotypic heterogeneity or concomitant pathology of other neurodegenerative disorders. We screened 488 autopsy-confirmed PD cases for expansion haplotype tag rs3849942T. In 196 identified haplotype carriers, the C9ORF72 repeat was genotyped using the repeat-primed polymerase chain reaction assay. No larger (intermediate or expanded) repeats were found in these autopsy-confirmed PD samples. This absence of larger repeats is significantly different from the frequency in clinically diagnosed datasets (P = 0.002). Our results suggest that expanded or intermediate C9ORF72 repeats in clinically diagnosed PD or parkinsonism might be an indication of heterogeneity in clinically diagnosed PD cases. Further studies are needed to elucidate the potential contribution of the C9ORF72 repeat to autopsy-confirmed PD. © 2014 International Parkinson and Movement Disorder Society.

  16. Medium- to long-term outcomes of botulinum toxin A for idiopathic overactive bladder

    PubMed Central

    Eldred-Evans, David; Sahai, Arun

    2016-01-01

    Botulinum toxin A (BoNT-A) has become an important therapeutic tool in the management of refractory overactive bladder (OAB). Over the last decade, there have been growing numbers of patients receiving repeat injections and these outcomes have begun to be reported in large, high-quality cohorts. This article reviews the current evidence for the medium- to long-term use of BoNT-A in adults with idiopathic detrusor overactivity (IDO) receiving repeat injections. We find that medium-term outcomes are encouraging but long-term outcomes are not as extensively reported. There is high-quality evidence that efficacy following the first injection persists across multiple treatment cycles. There are no additional safety concerns from repeat injections up to six treatment cycles. However, there is a need for further data to confirm the efficacy and safety of BoNT-A beyond the follow-up period in the current literature. PMID:28042308

  17. C9ORF72 hexanucleotide repeat expansions in clinical Alzheimer’s disease

    PubMed Central

    Harms, Matthew; Benitez, Bruno; Cairns, Nigel; Cooper, Breanna; Cooper, Paul; Mayo, Kevin; Carrell, David; Faber, Kelley; Williamson, Jennifer; Bird, Tom; Diaz-Arrastia, Ramon; Foroud, Tatiana M.; Boeve, Bradley F.; Graff-Radford, Neill R.; Mayeux, Richard; Chakraverty, Sumitra; Goate, Alison M.; Cruchaga, Carlos

    2013-01-01

    Objective Hexanucleotide repeat expansions in C9ORF72 underlie a significant fraction of frontotemporal dementia (FTD) and amyotrophic lateral sclerosis (ALS). This study investigates the frequency of C9ORF72 repeat expansions in clinically diagnosed late-onset Alzheimer’s disease (AD). Design, setting and patients This case-control study genotyped the C9ORF72 repeat expansion in 872 unrelated familial AD cases and 888 controls recruited as part of the NIA-LOAD cohort, a multi-site collaboration studying 1000 families with two or more individuals clinically diagnosed with late-onset-AD. Main Outcome Measure We determined the presence or absence of the C9ORF72 repeat expansion by repeat-primed PCR, the length of the longest non-expanded allele, segregation of the genotype with disease, and clinical features of repeat expansion carriers. Results Three families showed large C9ORF72 hexanucleotide repeat expansions. Two additional families carried more than 30 repeats. Segregation with disease could be demonstrated in 3 families. One affected expansion carrier had neuropathology compatible with AD. In the NIA-LOAD series, the C9ORF72 repeat expansions constituted the second most common pathogenic mutation, just behind the PSEN1 A79V mutation, highlighting the heterogeneity of clinical presentations associated with repeat expansions. Interpretation C9ORF72 repeat expansions explain a small proportion of patients with a clinical presentation indistinguishable from AD, and highlight the necessity of screening “FTD genes” in clinical AD cases with strong family history. PMID:23588422

  18. Development of detection medium for hard-to-culture beer-spoilage lactic acid bacteria.

    PubMed

    Suzuki, K; Asano, S; Iijima, K; Kuriyama, H; Kitagawa, Y

    2008-05-01

    To develop a detection medium for hard-to-culture beer-spoilage lactic acid bacteria (LAB). Four hard-to-culture beer-spoilage strains of LAB, belonging to Lactobacillus paracollinoides and Lactobacillus lindneri, have been obtained by repeatedly subculturing the wild-type strains in beer. To develop a countermeasure against these hard-to-culture beer-spoilage LAB, a beer-based medium was modified. As a consequence, the supplementation of a small amount of de Man Rogosa Sharpe medium was found to enhance the growth of hard-to-culture beer-spoilage LAB strains obtained in this study. In addition, sodium acetate was shown to improve the selectivity of this beer-based medium. Further comparative study was performed with five other media widely used for the detection of beer-spoilage LAB in the brewing industry. This study revealed that the newly developed medium, designated advanced beer-spoiler detection (ABD) medium, possessed superior sensitivity for hard-to-culture beer-spoilage LAB and comparable sensitivity with easy-to-culture beer-spoilage LAB. Moreover, ABD medium was found to suppress the growth of nonspoilage micro-organisms, and thereby allow the selective growth of beer-spoilage LAB. Advanced beer-spoiler detection medium is considered as an effective tool for comprehensive detection of beer-spoilage LAB in breweries. The detection by ABD medium can be used as an indicator for differentiating the beer-spoilage ability of LAB without further confirmatory tests in breweries.

  19. Propagation of ultrashort polarized light pulses in a nonlinear medium

    SciTech Connect

    Maimistov, A.I.

    1995-03-01

    Propagation of ultrashort optical pulses in a medium with degenerate resonance levels with respect to the angular momentum projections is considered. Under the assumption that the Rabi frequency is much smaller than the transition frequency and without using the slowly varying envelope approximation, a new nonlinear equation is obtained for describing this pulse dynamics. In the particular case when the pulse polarization is not changed, this is the modified Korteweg-de Vries equation. In the approximation of slowly varying envelopes, the reduced wave equation transforms into the vector nonlinear Schroedinger equation. 13 refs.

  20. Acoustically induced transparency in optically dense resonance medium.

    PubMed

    Radeonychev, Y V; Tokman, M D; Litvak, A G; Kocharovskaya, Olga

    2006-03-10

    It is shown that mechanical vibration (acoustical oscillation) of a solid medium along the propagation of multifrequency laser radiation enables one to control the resonant absorption. There exists an optimal spectral structure of the incident field dependent on vibration amplitude as well as the number and intensity of the frequency components that provides the full resonant transparency. A mechanism of the transparency is discussed. Transparency of this kind is shown to appear also via adiabatic modulation of the atomic transition frequency by an external microwave field.

  1. Metazoan evolution of the armadillo repeat superfamily.

    PubMed

    Gul, Ismail Sahin; Hulpiau, Paco; Saeys, Yvan; van Roy, Frans

    2017-02-01

    The superfamily of armadillo repeat proteins is a fascinating archetype of modular-binding proteins involved in various fundamental cellular processes, including cell-cell adhesion, cytoskeletal organization, nuclear import, and molecular signaling. Despite their diverse functions, they all share tandem armadillo (ARM) repeats, which stack together to form a conserved three-dimensional structure. This superhelical armadillo structure enables them to interact with distinct partners by wrapping around them. Despite the important functional roles of this superfamily, a comprehensive analysis of the composition, classification, and phylogeny of this protein superfamily has not been reported. Furthermore, relatively little is known about a subset of ARM proteins, and some of the current annotations of armadillo repeats are incomplete or incorrect, often due to high similarity with HEAT repeats. We identified the entire armadillo repeat superfamily repertoire in the human genome, annotated each armadillo repeat, and performed an extensive evolutionary analysis of the armadillo repeat proteins in both metazoan and premetazoan species. Phylogenetic analyses of the superfamily classified them into several discrete branches with members showing significant sequence homology, and often also related functions. Interestingly, the phylogenetic structure of the superfamily revealed that about 30 % of the members predate metazoans and represent an ancient subset, which is gradually evolving to acquire complex and highly diverse functions.

  2. Medium Modification of Vector Mesons

    SciTech Connect

    Chaden Djalali, Michael Paolone, Dennis Weygand, Michael H. Wood, Rakhsha Nasseripour

    2011-03-01

    The theory of the strong interaction, Quantum Chromodynamics (QCD), has been remarkably successful in describing high-energy and short-distance-scale experiments involving quarks and gluons. However, applying QCD to low energy and large-distance scale experiments has been a major challenge. Various QCD-inspired models predict a partial restoration of chiral symmetry in nuclear matter with modifications of the properties of hadrons from their free-space values. Measurable changes such as a shift in mass and/or a change of width are predicted at normal nuclear density. Photoproduction of vector mesons off nuclei have been performed at different laboratories. The properties of the ρ, ω and φ mesons are investigated either directly by measuring their mass spectra or indirectly through transparency ratios. The latest results regarding medium modifications of the vector mesons in the nuclear medium will be discussed.

  3. Medium modifications with recoil polarization

    SciTech Connect

    Brand, J.F.J. van den; Ent, R.

    1994-04-01

    The authors show that the virtual Compton scattering process allows for a precise study of the off-shell electron-nucleon vertex. In a separable model, they show the sensitivity to new unconstrained structure functions of the nucleon, beyond the usual Dirac and Pauli form factors. In addition, they show the sensitivity to bound nucleon form factors using the reaction 4He({rvec e},e{prime},{rvec p}){sup 3}H. A nucleon embedded in a nucleus represents a complex system. Firstly, the bound nucleon is necessarily off-shell and in principle a complete understanding of the dynamical structure of the nucleon is required in order to calculate its off-shell electromagnetic interaction. Secondly, one faces the possibility of genuine medium effects, such as for example quark-exchange contributions. Furthermore, the electromagnetic coupling to the bound nucleon is dependent on the nuclear dynamics through the self-energy of the nucleon in the nuclear medium.

  4. Thermal emission from a metamaterial wire medium slab.

    PubMed

    D'Aguanno, G; Mattiucci, N; Alù, A; Argyropoulos, C; Foreman, J V; Bloemer, M J

    2012-04-23

    We investigate thermal emission from a metamaterial wire medium embedded in a dielectric host and highlight two different regimes for efficient emission, respectively characterized by broadband emission near the effective plasma frequency of the metamaterial, and by narrow-band resonant emission at the band-edge in the Bragg scattering regime. We discuss how to control the spectral position and relative strength of these two emission mechanisms by varying the geometrical parameters of the proposed metamaterial and its temperature.

  5. Characteristics of Intergenerational Contractions of the CTG Repeat in Myotonic Dystrophy

    PubMed Central

    Ashizawa, T.; Anvret, M.; Baiget, M.; Barceló, J. M.; Brunner, H.; Cobo, A. M.; Dallapiccola, B.; Fenwick, R. G.; Grandell, U.; Harley, H.; Junien, C.; Koch, M. C.; Korneluk, R. G.; Lavedan, C.; Miki, T.; Mulley, J. C.; de Munain, A. López; Novelli, G.; Roses, A. D.; Seltzer, W. K.; Shaw, D. J.; Smeets, H.; Sutherland, G. R.; Yamagata, H.; Harper, P. S.

    1994-01-01

    In myotonic dystrophy (DM), the size of a CTG repeat in the DM kinase gene generally increases in successive generations with clinical evidence of anticipation. However, there have also been cases with an intergenerational contraction of the repeat. We examined 1,489 DM parent-offspring pairs, of which 95 (6.4%) showed such contractions in peripheral blood leukocytes (PBL). In 56 of the 95 pairs, clinical data allowed an analysis of their anticipation status. It is surprising that anticipation occurred in 27 (48%) of these 56 pairs, while none clearly showed a later onset of DM in the symptomatic offspring. The contraction occurred in 76 (10%) of 753 paternal transmissions and in 19 (3%) of 736 maternal transmissions. Anticipation was observed more frequently in maternal (85%) than in paternal (37%) transmissions (P < .001). The parental repeat size correlated with the size of intergenerational contraction (r2 = .50, P « .001), and the slope of linear regression was steeper in paternal (–.62) than in maternal (–.30) transmissions (P « .001). Sixteen DM parents had multiple DM offspring with the CTG repeat contractions. This frequency was higher than the frequency expected from the probability of the repeat contractions (6.4%) and the size of DM sib population (1.54 DM offspring per DM parent, in 968 DM parents). We conclude that (1) intergenerational contraction of the CTG repeat in leukocyte DNA frequently accompanies apparent anticipation, especially when DM is maternally transmitted, and (2) the paternal origin of the repeat and the presence of the repeat contraction in a sibling increase the probability of the CTG repeat contraction. PMID:8116611

  6. Precise control of repeating unit composition in biodegradable poly(3-hydroxyalkanoate) polymers synthesized by Escherichia coli.

    PubMed

    Tappel, Ryan C; Wang, Qin; Nomura, Christopher T

    2012-04-01

    The composition of medium-chain-length (MCL) poly(3-hydroxyalkanoate) (PHA) biopolymers is normally an uncontrollable random mixture of repeating units with differing side chain lengths. Attempts to generate MCL PHA homopolymers and control repeating unit composition have been published in native PHA-producing organisms but have limited ranges for the different sizes of repeating units that can be synthesized. In this study, a new Escherichia coli-based system that exhibits control over repeating unit composition for both MCL PHAs and short-chain-length (SCL) PHAs has been developed, covering an unprecedented range of repeating units. The fadB and fadJ genes from the β-oxidation pathway were eliminated from the chromosome of E. coli LS5218. The subsequent blockage in β-oxidation caused a buildup of enoyl-CoA intermediates, which were converted to PHAs by an (R)-specific enoyl-CoA hydratase (PhaJ4) and PHA synthase [PhaC1(STQK)] expressed from a plasmid DNA construct. Fatty acid substrates were converted to PHAs with repeating units equal in the number of carbon atoms to the fatty acid substrate. The broad substrate specificities of the PhaJ4 and PhaC1(STQK) enzymes allowed for the production of homopolymers with strict control over the repeating unit composition from substrates of four to twelve carbons in length. Polymers were purified and analyzed by GC, GC-MS, and NMR for structural composition and by DSC, TGA, and GPC for thermal and physical characteristics. This study marks the development of the first single biological system to achieve consistent repeating unit control over such a broad range of repeating units in PHAs. Copyright © 2011 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

  7. Expansion of CAG Repeats in Escherichia coli Is Controlled by Single-Strand DNA Exonucleases of Both Polarities

    PubMed Central

    Jackson, Adam; Okely, Ewa A.

    2014-01-01

    The expansion of CAG·CTG repeat tracts is responsible for several neurodegenerative diseases, including Huntington disease and myotonic dystrophy. Understanding the molecular mechanism of CAG·CTG repeat tract expansion is therefore important if we are to develop medical interventions limiting expansion rates. Escherichia coli provides a simple and tractable model system to understand the fundamental properties of these DNA sequences, with the potential to suggest pathways that might be conserved in humans or to highlight differences in behavior that could signal the existence of human-specific factors affecting repeat array processing. We have addressed the genetics of CAG·CTG repeat expansion in E. coli and shown that these repeat arrays expand via an orientation-independent mechanism that contrasts with the orientation dependence of CAG·CTG repeat tract contraction. The helicase Rep contributes to the orientation dependence of repeat tract contraction and limits repeat tract expansion in both orientations. However, RuvAB-dependent fork reversal, which occurs in a rep mutant, is not responsible for the observed increase in expansions. The frequency of repeat tract expansion is controlled by both the 5′–3′ exonuclease RecJ and the 3′–5′ exonuclease ExoI, observations that suggest the importance of both 3′and 5′ single-strand ends in the pathway of CAG·CTG repeat tract expansion. We discuss the relevance of our results to two competing models of repeat tract expansion. PMID:25081568

  8. Anticipation and Instability of IT-15 (CAG)N Repeats in Parent-Offspring Pairs with Huntington Disease

    PubMed Central

    Ranen, Neal G.; Stine, O. Colin; Abbott, Margaret H.; Sherr, Meeia; Codori, Ann-Marie; Franz, Mary Louise; Chao, Nientzu I.; Chung, Anneke S.; Pleasant, Nicole; Callahan, Colleen; Kasch, Laura M.; Ghaffari, Manely; Chase, Gary A.; Kazazian, Haig H.; Brandt, Jason; Folstein, Susan E.; Ross, Christopher A.

    1995-01-01

    Huntington disease (HD) is an autosomal dominant degenerative disorder caused by an expanded and unstable trinucleotide repeat (CAG)n in a gene (IT-15) on chromosome 4. HD exhibits genetic anticipation—earlier onset in successive generations within a pedigree. From a population-based clinical sample, we ascertained parent-offspring pairs with expanded alleles, to examine the intergenerational behavior of the trinucleotide repeat and its relationship to anticipation. We find that the change in repeat length with paternal transmission is significantly correlated with the change in age at onset between the father and offspring. When expanded triplet repeats of affected parents are separated by median repeat length, we find that the longer paternal and maternal repeats are both more unstable on transmission. However, unlike in paternal transmission, in which longer expanded repeats display greater net expansion than do shorter expanded repeats, in maternal transmission there is no mean change in repeat length for either longer or shorter expanded repeats. We also confirmed the inverse relationship between repeat length and age at onset, the higher frequency of juvenile-onset cases arising from paternal transmission, anticipation as a phenomenon of paternal transmission, and greater expansion of the trinucleotide repeat with paternal transmission. Stepwise multiple regression indicates that, in addition to repeat length of offspring, age at onset of affected parent and sex of affected parent contribute significantly to the variance in age at onset of the offspring. Thus, in addition to triplet repeat length, other factors, which could act as environmental factors, genetic factors, or both, contribute to age at onset. Our data establish that further expansion of paternal repeats within the affected range provides a biological basis of anticipation in HD. PMID:7668287

  9. Explaining the gender difference in nightmare frequency.

    PubMed

    Schredl, Michael

    2014-01-01

    A recent meta-analysis showed a robust gender difference in nightmare frequency of medium effect size in adolescents and young adults: Women tend to report nightmares more frequently than men. The present study, carried out in an unselected student sample, indicates that 2 factors mediate the gender difference in nightmare frequency: neuroticism and overall dream recall frequency. The effect of neuroticism on the gender difference and the finding that the gender difference in nightmare frequency emerges at an age of about 10 years suggest that gender-specific socialization processes may play an important role in explaining the gender differences in nightmare frequency in adolescents and young to middle-aged adults. This idea is supported by the previous finding that nightmare frequency is related to sex role orientation. However, longitudinal studies are necessary to validate these hypotheses.

  10. Effect of repeated US stimulation on adiponectin secretion by adipocytes of obese human subjects

    NASA Astrophysics Data System (ADS)

    Fujii, Yasutomo; Taniguchi, Nobuyuki; Satoh, Masaaki; Irie, Takasuke; Itoh, Kouichi

    2006-05-01

    To clarify the effect of the repeated sonication on the adiponectin secretion by adipocytes obtained from obese subjects. Using 1-MHz continuous-wave ultrasound at an intensity of 0.50 or 2.1 W/cm2, we sonicated culture flasks of subcutaneous adipocytes obtained from obese human subjects, in a series of 3 sessions of US stimulation applied for a daily total of 15 min. For the measurement of adiponectin secretion, 50 μl of the culture medium was collected from each flask every 24 h after the 1st stimulation. Quantification of adiponectin protein levels in cell culture supernatants was performed with a commercially available ELISA kit recommended by the manufacturer. The adiponectin concentrations in the culture medium of the US stimulation groups rose significantly (p<0.05). Repeated US stimulation may accelerate adiponectin secretion in obese human adipocytes.

  11. Petroleum Jelly: A Novel Medium for Ocular Ultrasound.

    PubMed

    Engelbert, Patrick R; Palma, James K

    2015-08-01

    Ocular ultrasound is a useful emergency department imaging modality for evaluation of many conditions, such as retinal detachment, vitreous detachment, vitreous hemorrhage, and elevated intracranial pressure. Obtaining satisfactory ocular ultrasound images requires the use of a medium that eliminates the air interface between the patient's eye and the transducer. Ultrasound gel is most commonly used; however, the use of a transparent dressing applied to the closed eye prior to the application of gel has also been described as a suitable technique. Ocular ultrasound is performed with the high-frequency linear array transducer using a medium to eliminate the air interface between the eye and the transducer. Although ultrasound gel is most frequently used, it can cause minor eye irritation. Placing a transparent dressing over a closed eye prior to application of gel can eliminate the eye irritation. However, our experience in training >500 students in ocular ultrasound has shown that air is frequently introduced underneath the dressing, which leads to poor-quality images. This article introduces petroleum jelly as a medium for ocular ultrasound. By applying a layer of petroleum jelly over the closed eye and allowing it to warm via body heat for 30 to 45 s, this medium can both minimize patient discomfort and provide easily obtainable, high-quality ocular ultrasound images. This article introduces petroleum jelly as a safe, comfortable, and effective medium for ocular ultrasound examination. Published by Elsevier Inc.

  12. A pan-European study of the C9orf72 repeat associated with FTLD: geographic prevalence, genomic instability, and intermediate repeats.

    PubMed

    van der Zee, Julie; Gijselinck, Ilse; Dillen, Lubina; Van Langenhove, Tim; Theuns, Jessie; Engelborghs, Sebastiaan; Philtjens, Stéphanie; Vandenbulcke, Mathieu; Sleegers, Kristel; Sieben, Anne; Bäumer, Veerle; Maes, Githa; Corsmit, Ellen; Borroni, Barbara; Padovani, Alessandro; Archetti, Silvana; Perneczky, Robert; Diehl-Schmid, Janine; de Mendonça, Alexandre; Miltenberger-Miltenyi, Gabriel; Pereira, Sónia; Pimentel, José; Nacmias, Benedetta; Bagnoli, Silvia; Sorbi, Sandro; Graff, Caroline; Chiang, Huei-Hsin; Westerlund, Marie; Sanchez-Valle, Raquel; Llado, Albert; Gelpi, Ellen; Santana, Isabel; Almeida, Maria Rosário; Santiago, Beatriz; Frisoni, Giovanni; Zanetti, Orazio; Bonvicini, Cristian; Synofzik, Matthis; Maetzler, Walter; Vom Hagen, Jennifer Müller; Schöls, Ludger; Heneka, Michael T; Jessen, Frank; Matej, Radoslav; Parobkova, Eva; Kovacs, Gabor G; Ströbel, Thomas; Sarafov, Stayko; Tournev, Ivailo; Jordanova, Albena; Danek, Adrian; Arzberger, Thomas; Fabrizi, Gian Maria; Testi, Silvia; Salmon, Eric; Santens, Patrick; Martin, Jean-Jacques; Cras, Patrick; Vandenberghe, Rik; De Deyn, Peter Paul; Cruts, Marc; Van Broeckhoven, Christine; van der Zee, Julie; Gijselinck, Ilse; Dillen, Lubina; Van Langenhove, Tim; Theuns, Jessie; Philtjens, Stéphanie; Sleegers, Kristel; Bäumer, Veerle; Maes, Githa; Corsmit, Ellen; Cruts, Marc; Van Broeckhoven, Christine; van der Zee, Julie; Gijselinck, Ilse; Dillen, Lubina; Van Langenhove, Tim; Philtjens, Stéphanie; Theuns, Jessie; Sleegers, Kristel; Bäumer, Veerle; Maes, Githa; Cruts, Marc; Van Broeckhoven, Christine; Engelborghs, Sebastiaan; De Deyn, Peter P; Cras, Patrick; Engelborghs, Sebastiaan; De Deyn, Peter P; Vandenbulcke, Mathieu; Vandenbulcke, Mathieu; Borroni, Barbara; Padovani, Alessandro; Archetti, Silvana; Perneczky, Robert; Diehl-Schmid, Janine; Synofzik, Matthis; Maetzler, Walter; Müller Vom Hagen, Jennifer; Schöls, Ludger; Synofzik, Matthis; Maetzler, Walter; Müller Vom Hagen, Jennifer; Schöls, Ludger; Heneka, Michael T; Jessen, Frank; Ramirez, Alfredo; Kurzwelly, Delia; Sachtleben, Carmen; Mairer, Wolfgang; de Mendonça, Alexandre; Miltenberger-Miltenyi, Gabriel; Pereira, Sónia; Firmo, Clara; Pimentel, José; Sanchez-Valle, Raquel; Llado, Albert; Antonell, Anna; Molinuevo, Jose; Gelpi, Ellen; Graff, Caroline; Chiang, Huei-Hsin; Westerlund, Marie; Graff, Caroline; Kinhult Ståhlbom, Anne; Thonberg, Håkan; Nennesmo, Inger; Börjesson-Hanson, Anne; Nacmias, Benedetta; Bagnoli, Silvia; Sorbi, Sandro; Bessi, Valentina; Piaceri, Irene; Santana, Isabel; Santiago, Beatriz; Santana, Isabel; Helena Ribeiro, Maria; Rosário Almeida, Maria; Oliveira, Catarina; Massano, João; Garret, Carolina; Pires, Paula; Frisoni, Giovanni; Zanetti, Orazio; Bonvicini, Cristian; Sarafov, Stayko; Tournev, Ivailo; Jordanova, Albena; Tournev, Ivailo; Kovacs, Gabor G; Ströbel, Thomas; Heneka, Michael T; Jessen, Frank; Ramirez, Alfredo; Kurzwelly, Delia; Sachtleben, Carmen; Mairer, Wolfgang; Jessen, Frank; Matej, Radoslav; Parobkova, Eva; Danel, Adrian; Arzberger, Thomas; Maria Fabrizi, Gian; Testi, Silvia; Ferrari, Sergio; Cavallaro, Tiziana; Salmon, Eric; Santens, Patrick; Cras, Patrick

    2013-02-01

    We assessed the geographical distribution of C9orf72 G(4) C(2) expansions in a pan-European frontotemporal lobar degeneration (FTLD) cohort (n = 1,205), ascertained by the European Early-Onset Dementia (EOD) consortium. Next, we performed a meta-analysis of our data and that of other European studies, together 2,668 patients from 15 Western European countries. The frequency of the C9orf72 expansions in Western Europe was 9.98% in overall FTLD, with 18.52% in familial, and 6.26% in sporadic FTLD patients. Outliers were Finland and Sweden with overall frequencies of respectively 29.33% and 20.73%, but also Spain with 25.49%. In contrast, prevalence in Germany was limited to 4.82%. In addition, we studied the role of intermediate repeats (7-24 repeat units), which are strongly correlated with the risk haplotype, on disease and C9orf72 expression. In vitro reporter gene expression studies demonstrated significantly decreased transcriptional activity of C9orf72 with increasing number of normal repeat units, indicating that intermediate repeats might act as predisposing alleles and in favor of the loss-of-function disease mechanism. Further, we observed a significantly increased frequency of short indels in the GC-rich low complexity sequence adjacent to the G(4) C(2) repeat in C9orf72 expansion carriers (P < 0.001) with the most common indel creating one long contiguous imperfect G(4) C(2) repeat, which is likely more prone to replication slippage and pathological expansion.

  13. Dispersion Measure Variation of Repeating Fast Radio Burst Sources

    NASA Astrophysics Data System (ADS)

    Yang, Yuan-Pei; Zhang, Bing

    2017-09-01

    The repeating fast radio burst (FRB) 121102 was recently localized in a dwarf galaxy at a cosmological distance. The dispersion measure (DM) derived for each burst from FRB 121102 so far has not shown significant evolution, even though an apparent increase was recently seen with newly detected VLA bursts. It is expected that more repeating FRB sources may be detected in the future. In this work, we investigate a list of possible astrophysical processes that might cause DM variation of a particular FRB source. The processes include (1) cosmological scale effects such as Hubble expansion and large-scale structure fluctuations; (2) FRB local effects such as gas density fluctuation, expansion of a supernova remnant (SNR), a pulsar wind nebula, and an H ii region; and (3) the propagation effect due to plasma lensing. We find that the DM variations contributed by the large-scale structure are extremely small, and any observable DM variation is likely caused by the plasma local to the FRB source. In addition to mechanisms that decrease DM over time, we suggest that an FRB source in an expanding SNR around a nearly neutral ambient medium during the deceleration (Sedov–Taylor and snowplow) phases or in a growing H ii region can increase DM. Some effects (e.g., an FRB source moving in an H ii region or plasma lensing) can produce either positive or negative DM variations. Future observations of DM variations of FRB 121102 and other repeating FRB sources can provide important clues regarding the physical origin of these sources.

  14. Hepcidin level predicts hemoglobin concentration in individuals undergoing repeated phlebotomy.

    PubMed

    Mast, Alan E; Schlumpf, Karen S; Wright, David J; Johnson, Bryce; Glynn, Simone A; Busch, Michael P; Olbina, Gordana; Westerman, Mark; Nemeth, Elizabeta; Ganz, Tomas

    2013-08-01

    Dietary iron absorption is regulated by hepcidin, an iron regulatory protein produced by the liver. Hepcidin production is regulated by iron stores, erythropoiesis and inflammation, but its physiology when repeated blood loss occurs has not been characterized. Hepcidin was assayed in plasma samples obtained from 114 first-time/reactivated (no blood donations in preceding 2 years) female donors and 34 frequent (≥3 red blood cell donations in preceding 12 months) male donors as they were phlebotomized ≥4 times over 18-24 months. Hepcidin levels were compared to ferritin and hemoglobin levels using multivariable repeated measures regression models. Hepcidin, ferritin and hemoglobin levels declined with increasing frequency of donation in the first-time/reactivated females. Hepcidin and ferritin levels correlated well with each other (Spearman's correlation of 0.74), but on average hepcidin varied more between donations for a given donor relative to ferritin. In a multivariable repeated measures regression model the predicted inter-donation decline in hemoglobin varied as a function of hepcidin and ferritin; hemoglobin was 0.51 g/dL lower for subjects with low (>45.7 ng/mL) or decreasing hepcidin and low ferritin (>26 ng/mL), and was essentially zero for other subjects including those with high (>45.7 ng/mL) or increasing hepcidin and low ferritin (>26 ng/mL) levels (P<0.001). In conclusion, hepcidin levels change rapidly in response to dietary iron needed for erythropoiesis. The dynamic regulation of hepcidin in the presence of a low levels of ferritin suggests that plasma hepcidin concentration may provide clinically useful information about an individual's iron status (and hence capacity to tolerate repeated blood donations) beyond that of ferritin alone. Clinicaltrials.gov identifier: NCT00097006.

  15. Quantum Cascade Laser Frequency Combs

    NASA Astrophysics Data System (ADS)

    Faist, Jérôme; Villares, Gustavo; Scalari, Giacomo; Rösch, Markus; Bonzon, Christopher; Hugi, Andreas; Beck, Mattias

    2016-06-01

    It was recently demonstrated that broadband quantum cascade lasers can operate as frequency combs. As such, they operate under direct electrical pumping at both mid-infrared and THz frequencies, making them very attractive for dual-comb spectroscopy. Performance levels are continuously improving, with average powers over 100mW and frequency coverage of 100 cm-1 in the mid-infrared region. In the THz range, 10mW of average power and 600 GHz of frequency coverage are reported. As a result of the very short upper state lifetime of the gain medium, the mode proliferation in these sources arises from four-wave mixing rather than saturable absorption. As a result, their optical output is characterized by the tendency of small intensity modulation of the output power, and the relative phases of the modes to be similar to the ones of a frequency modulated laser. Recent results include the proof of comb operation down to a metrological level, the observation of a Schawlow-Townes broadened linewidth, as well as the first dual-comb spectroscopy measurements. The capability of the structure to integrate monothically nonlinear optical elements as well as to operate as a detector shows great promise for future chip integration of dual-comb systems.

  16. Epigenetics and Triplet-Repeat Neurological Diseases.

    PubMed

    Nageshwaran, Sathiji; Festenstein, Richard

    2015-01-01

    The term "junk DNA" has been reconsidered following the delineation of the functional significance of repetitive DNA regions. Typically associated with centromeres and telomeres, DNA repeats are found in nearly all organisms throughout their genomes. Repetitive regions are frequently heterochromatinized resulting in silencing of intrinsic and nearby genes. However, this is not a uniform rule, with several genes known to require such an environment to permit transcription. Repetitive regions frequently exist as dinucleotide, trinucleotide, and tetranucleotide repeats. The association between repetitive regions and disease was emphasized following the discovery of abnormal trinucleotide repeats underlying spinal and bulbar muscular atrophy (Kennedy's disease) and fragile X syndrome of mental retardation (FRAXA) in 1991. In this review, we provide a brief overview of epigenetic mechanisms and then focus on several diseases caused by DNA triplet-repeat expansions, which exhibit diverse epigenetic effects. It is clear that the emerging field of epigenetics is already generating novel potential therapeutic avenues for this group of largely incurable diseases.

  17. The telomere repeat motif of basal Metazoa.

    PubMed

    Traut, Walther; Szczepanowski, Monika; Vítková, Magda; Opitz, Christian; Marec, Frantisek; Zrzavý, Jan

    2007-01-01

    In most eukaryotes the telomeres consist of short DNA tandem repeats and associated proteins. Telomeric repeats are added to the chromosome ends by telomerase, a specialized reverse transcriptase. We examined telomerase activity and telomere repeat sequences in representatives of basal metazoan groups. Our results show that the 'vertebrate' telomere motif (TTAGGG)( n ) is present in all basal metazoan groups, i.e. sponges, Cnidaria, Ctenophora, and Placozoa, and also in the unicellular metazoan sister group, the Choanozoa. Thus it can be considered the ancestral telomere repeat motif of Metazoa. It has been conserved from the metazoan radiation in most animal phylogenetic lineages, and replaced by other motifs-according to our present knowledge-only in two major lineages, Arthropoda and Nematoda.

  18. DNA Triplet Repeat Expansion and Mismatch Repair

    PubMed Central

    Iyer, Ravi R.; Pluciennik, Anna; Napierala, Marek; Wells, Robert D.

    2016-01-01

    DNA mismatch repair is a conserved antimutagenic pathway that maintains genomic stability through rectification of DNA replication errors and attenuation of chromosomal rearrangements. Paradoxically, mutagenic action of mismatch repair has been implicated as a cause of triplet repeat expansions that cause neurological diseases such as Huntington disease and myotonic dystrophy. This mutagenic process requires the mismatch recognition factor MutSβ and the MutLα (and/or possibly MutLγ) endonuclease, and is thought to be triggered by the transient formation of unusual DNA structures within the expanded triplet repeat element. This review summarizes the current knowledge of DNA mismatch repair involvement in triplet repeat expansion, which encompasses in vitro biochemical findings, cellular studies, and various in vivo transgenic animal model experiments. We present current mechanistic hypotheses regarding mismatch repair protein function in mediating triplet repeat expansions and discuss potential therapeutic approaches targeting the mismatch repair pathway. PMID:25580529

  19. Cardiorespiratory Coordination in Repeated Maximal Exercise.

    PubMed

    Garcia-Retortillo, Sergi; Javierre, Casimiro; Hristovski, Robert; Ventura, Josep L; Balagué, Natàlia

    2017-01-01

    Increases in cardiorespiratory coordination (CRC) after training with no differences in performance and physiological variables have recently been reported using a principal component analysis approach. However, no research has yet evaluated the short-term effects of exercise on CRC. The aim of this study was to delineate the behavior of CRC under different physiological initial conditions produced by repeated maximal exercises. Fifteen participants performed 2 consecutive graded and maximal cycling tests. Test 1 was performed without any previous exercise, and Test 2 6 min after Test 1. Both tests started at 0 W and the workload was increased by 25 W/min in males and 20 W/min in females, until they were not able to maintain the prescribed cycling frequency of 70 rpm for more than 5 consecutive seconds. A principal component (PC) analysis of selected cardiovascular and cardiorespiratory variables (expired fraction of O2, expired fraction of CO2, ventilation, systolic blood pressure, diastolic blood pressure, and heart rate) was performed to evaluate the CRC defined by the number of PCs in both tests. In order to quantify the degree of coordination, the information entropy was calculated and the eigenvalues of the first PC (PC1) were compared between tests. Although no significant differences were found between the tests with respect to the performed maximal workload (Wmax), maximal oxygen consumption (VO2 max), or ventilatory threshold (VT), an increase in the number of PCs and/or a decrease of eigenvalues of PC1 (t = 2.95; p = 0.01; d = 1.08) was found in Test 2 compared to Test 1. Moreover, entropy was significantly higher (Z = 2.33; p = 0.02; d = 1.43) in the last test. In conclusion, despite the fact that no significant differences were observed in the conventionally explored maximal performance and physiological variables (Wmax, VO2 max, and VT) between tests, a reduction of CRC was observed in Test 2. These results emphasize the interest of CRC evaluation in

  20. Cardiorespiratory Coordination in Repeated Maximal Exercise

    PubMed Central

    Garcia-Retortillo, Sergi; Javierre, Casimiro; Hristovski, Robert; Ventura, Josep L.; Balagué, Natàlia

    2017-01-01

    Increases in cardiorespiratory coordination (CRC) after training with no differences in performance and physiological variables have recently been reported using a principal component analysis approach. However, no research has yet evaluated the short-term effects of exercise on CRC. The aim of this study was to delineate the behavior of CRC under different physiological initial conditions produced by repeated maximal exercises. Fifteen participants performed 2 consecutive graded and maximal cycling tests. Test 1 was performed without any previous exercise, and Test 2 6 min after Test 1. Both tests started at 0 W and the workload was increased by 25 W/min in males and 20 W/min in females, until they were not able to maintain the prescribed cycling frequency of 70 rpm for more than 5 consecutive seconds. A principal component (PC) analysis of selected cardiovascular and cardiorespiratory variables (expired fraction of O2, expired fraction of CO2, ventilation, systolic blood pressure, diastolic blood pressure, and heart rate) was performed to evaluate the CRC defined by the number of PCs in both tests. In order to quantify the degree of coordination, the information entropy was calculated and the eigenvalues of the first PC (PC1) were compared between tests. Although no significant differences were found between the tests with respect to the performed maximal workload (Wmax), maximal oxygen consumption (VO2 max), or ventilatory threshold (VT), an increase in the number of PCs and/or a decrease of eigenvalues of PC1 (t = 2.95; p = 0.01; d = 1.08) was found in Test 2 compared to Test 1. Moreover, entropy was significantly higher (Z = 2.33; p = 0.02; d = 1.43) in the last test. In conclusion, despite the fact that no significant differences were observed in the conventionally explored maximal performance and physiological variables (Wmax, VO2 max, and VT) between tests, a reduction of CRC was observed in Test 2. These results emphasize the interest of CRC evaluation in

  1. The word frequency effect during sentence reading: A linear or nonlinear effect of log frequency?

    PubMed

    White, Sarah J; Drieghe, Denis; Liversedge, Simon P; Staub, Adrian

    2016-10-20

    The effect of word frequency on eye movement behaviour during reading has been reported in many experimental studies. However, the vast majority of these studies compared only two levels of word frequency (high and low). Here we assess whether the effect of log word frequency on eye movement measures is linear, in an experiment in which a critical target word in each sentence was at one of three approximately equally spaced log frequency levels. Separate analyses treated log frequency as a categorical or a continuous predictor. Both analyses showed only a linear effect of log frequency on the likelihood of skipping a word, and on first fixation duration. Ex-Gaussian analyses of first fixation duration showed similar effects on distributional parameters in comparing high- and medium-frequency words, and medium- and low-frequency words. Analyses of gaze duration and the probability of a refixation suggested a nonlinear pattern, with a larger effect at the lower end of the log frequency scale. However, the nonlinear effects were small, and Bayes Factor analyses favoured the simpler linear models for all measures. The possible roles of lexical and post-lexical factors in producing nonlinear effects of log word frequency during sentence reading are discussed.

  2. Newly arisen DNA repeats in primate phylogeny.

    PubMed

    Ryan, S C; Dugaiczyk, A

    1989-12-01

    We discovered the presence of an Alu and an Xba repetitive DNA element within introns 4 and 7, respectively, of the human alpha-fetoprotein (AFP) gene; these elements are absent from the same gene in the gorilla. The Alu element is flanked by 12-base-pair direct repeats, AGGATGTTGTGG ... (Alu) ... AGGATGTTGTGG, which presumably arose by way of duplication of the intronic target site AGGATGTTGTGG at the time of the Alu insertion. In the gorilla, only a single copy of the unoccupied target site is present, which is identical to the terminal repeat flanking the human Alu element. There are two copies of an Xba repeat in the human AFP gene, apparently the only two in the genome. Xba1 and Xba2, located within introns 8 and 7, respectively, differ from each other at 3 of 303 positions. Xba1 is referred to as the old (ancestral) repeat because it lacks direct repeats. The new (derived) Xba2 is flanked by direct repeats, TTTCTTTTT ... (Xba) ... TTTCTTCTT, and is thought to have arisen as a result of transposition of Xba1. The ancestral Xba1 and a single copy of the Xba2 target site are present at orthologous positions in the gorilla, but the new Xba2 is absent. We conclude that the Alu and Xba DNA repeats emerged in the human genome at a time postdating the human-gorilla divergence and became established as genetic novelties in the human lineage. We submit that the chronology of divergence of primate lines of evolution can be correlated with the timing of insertion of new DNA repeats into the genomes of those primates.

  3. Cumulative Effect of Repeated Brief Cerebral Ischemia

    DTIC Science & Technology

    1993-05-31

    KL, Pohost GM and Conger KA, Correlating EEG and Lactate Kinetics During Repeated Brief Cerebral Ischemia, Proceedings of the American Heart Association 1993...Cornelating EEG and Lactate Kinetics During Repeated Brief Cerebral Ischemia, Proceedings of the American Heart Association 1993. 4) HP Hetherington...thes Bernhard Foundation. ass- 134 󈧑&.1 n5. 9# American Heart Association 026085 66th Scientific Sessions Abstract Form Medical Research Nursing

  4. Repeat radiosurgery for cerebral arteriovenous malformations.

    PubMed

    Awad, Ahmed J; Walcott, Brian P; Stapleton, Christopher J; Ding, Dale; Leed, Cheng-Chia; Loeffler, Jay S

    2015-06-01

    We perform a systematic review of repeat radiosurgery for cerebral arteriovenous malformations (AVM) with an emphasis on lesion obliteration rates and complications. Radiosurgery is an accepted treatment modality for AVM located in eloquent cortex or deep brain structures. For residual or persistent lesions, repeat radiosurgery can be considered if sufficient time has passed to allow for a full appreciation of treatment effects, usually at least 3years. A systematic review was performed in accordance with Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. References for this review were identified by searches of MEDLINE, Web of Science and Google Scholar databases. A total of 14 studies comprising 733 patients met the review criteria and were included. For series that reported target dose at both first and repeat treatments, the weighted means were 19.42Gy and 19.06Gy, respectively. The mean and median obliteration rate for the repeat radiosurgery treatments were 61% (95% confidence interval 51.9-71.7%) and 61.5%, respectively. The median follow up following radiosurgery ranged from 19.5 to 80months. Time to complete obliteration after the repeat treatment ranged from 21 to 40.8months. The most common complications of repeat radiosurgery for AVM included hemorrhage (7.6%) and radiation-induced changes (7.4%). Repeat radiosurgery can be used to treat incompletely obliterated AVM with an obliteration rate of 61%. Complications are related to treatment effect latency (hemorrhage risk) as well as radiation-induced changes. Repeat radiosurgery can be performed at 3 years following the initial treatment, allowing for full realization of effects from the initial treatment prior to commencing therapy. Copyright © 2015 Elsevier Ltd. All rights reserved.

  5. Repeat radiosurgery for cerebral arteriovenous malformations

    PubMed Central

    Stapleton, Christopher J.; Ding, Dale; Leed, Cheng-Chia; Loeffler, Jay S.

    2015-01-01

    We perform a systematic review of repeated radiosurgery for cerebral arteriovenous malformations (AVM) with an emphasis on lesion obliteration rates and complications. Radiosurgery is an accepted treatment modality for AVM located in eloquent cortex or deep brain structures. For residual or persistent lesions, repeated radiosurgery can be considered if sufficient time has passed to allow for a full appreciation of treatment effects, usually at least 3 years. A systematic review was performed in accordance with Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines. References for this review were identified by searches of MEDLINE, Web of Science and Google Scholar databases. A total of 14 studies comprising 733 patients met the review criteria and were included. For series that reported target dose at both first and repeat treatments, the weighted means were 19.42 Gy and 19.06 Gy, respectively. The mean and median obliteration rate for the repeat radiosurgery treatments were 61% (95% confidence interval 51.9–71.7%) and 61.5%, respectively. The median follow up following radiosurgery ranged from 19.5 to 80 months. Time to complete obliteration after the repeat treatment ranged from 21 to 40.8 months. The most common complications of repeated radiosurgery for AVM included hemorrhage (7.6%) and radiation-induced changes (7.4%). Repeat radiosurgery can be used to treat incompletely obliterated AVM with an obliteration rate of 61%. Complications are related to treatment effect latency (hemorrhage risk) as well as radiation-induced changes. Repeat radiosurgery can be performed at three years following the initial treatment, allowing for full realization of effects from the initial treatment prior to commencing therapy. PMID:25913746

  6. Security of Quantum Repeater Network Operation

    DTIC Science & Technology

    2016-10-03

    can disrupt operation of the network. Our work produced a first-of-its-kind taxonomy of potential attacks on quantum repeater network operations...behaving node, or a small number of them, can disrupt operation of the network. Our work produced a first-of-its-kind taxonomy of potential attacks on...created a taxonomy of possible attacks on repeater nodes, published in SENT 2015 (Suzuki & Van Meter, 2015). We modeled our taxonomy after security

  7. Monitoring plant phenology using digital repeat photography.

    PubMed

    Crimmins, Michael A; Crimmins, Theresa M

    2008-06-01

    Repeated observations of plant phenology have been shown to be important indicators of global change. However, capturing the exact date of key events requires daily observations during the growing season, making phenologic observations relatively labor intensive and costly to collect. One alternative to daily observations for capturing the dates of key phenologic events is repeat photography. In this study, we explored the utility of repeat digital photography for monitoring phenologic events in plants. We provide an illustration of this approach and its utility by placing observations made using repeat digital imagery in context with local meteorologic and edaphic variables. We found that repeat photography provides a reliable, consistent measurement of phenophase. In addition, digital photography offers advantages in that it can be mathematically manipulated to detect and enhance patterns; it can classify objects; and digital photographs can be archived for future analysis. In this study, an estimate of greenness and counts of individual flowers were extracted by way of mathematic algorithms from the photo time series. These metrics were interpreted using meteorologic measurements collected at the study site. We conclude that repeat photography, coupled with site-specific meteorologic measurements, could greatly enhance our understanding environmental triggers of phenologic events. In addition, the methods described could easily be adopted by citizen scientists and the general public as well as professionals in the field.

  8. Digital repeat analysis; setup and operation.

    PubMed

    Nol, J; Isouard, G; Mirecki, J

    2006-06-01

    Since the emergence of digital imaging, there have been questions about the necessity of continuing reject analysis programs in imaging departments to evaluate performance and quality. As a marketing strategy, most suppliers of digital technology focus on the supremacy of the technology and its ability to reduce the number of repeats, resulting in less radiation doses given to patients and increased productivity in the department. On the other hand, quality assurance radiographers and radiologists believe that repeats are mainly related to positioning skills, and repeat analysis is the main tool to plan training needs to up-skill radiographers. A comparative study between conventional and digital imaging was undertaken to compare outcomes and evaluate the need for reject analysis. However, digital technology still being at its early development stages, setting a credible reject analysis program became the major task of the study. It took the department, with the help of the suppliers of the computed radiography reader and the picture archiving and communication system, over 2 years of software enhancement to build a reliable digital repeat analysis system. The results were supportive of both philosophies; the number of repeats as a result of exposure factors was reduced dramatically; however, the percentage of repeats as a result of positioning skills was slightly on the increase for the simple reason that some rejects in the conventional system qualifying for both exposure and positioning errors were classified as exposure error. The ability of digitally adjusting dark or light images reclassified some of those images as positioning errors.

  9. Remarkable selective constraints on exonic dinucleotide repeats.

    PubMed

    Haasl, Ryan J; Payseur, Bret A

    2014-09-01

    Long dinucleotide repeats found in exons present a substantial mutational hazard: mutations at these loci occur often and generate frameshifts. Here, we provide clear and compelling evidence that exonic dinucleotides experience strong selective constraint. In humans, only 18 exonic dinucleotides have repeat lengths greater than six, which contrasts sharply with the genome-wide distribution of dinucleotides. We genotyped each of these dinucleotides in 200 humans from eight 1000 Genomes Project populations and found a near-absence of polymorphism. More remarkably, divergence data demonstrate that repeat lengths have been conserved across the primate phylogeny in spite of what is likely considerable mutational pressure. Coalescent simulations show that even a very low mutation rate at these loci fails to explain the anomalous patterns of polymorphism and divergence. Our data support two related selective constraints on the evolution of exonic dinucleotides: a short-term intolerance for any change to repeat length and a long-term prevention of increases to repeat length. In general, our results implicate purifying selection as the force that eliminates new, deleterious mutants at exonic dinucleotides. We briefly discuss the evolution of the longest exonic dinucleotide in the human genome--a 10 x CA repeat in fibroblast growth factor receptor-like 1 (FGFRL1)--that should possess a considerably greater mutation rate than any other exonic dinucleotide and therefore generate a large number of deleterious variants. © 2014 The Author(s). Evolution © 2014 The Society for the Study of Evolution.

  10. Dynamic combinatorial libraries of artificial repeat proteins.

    PubMed

    Eisenberg, Margarita; Shumacher, Inbal; Cohen-Luria, Rivka; Ashkenasy, Gonen

    2013-06-15

    Repeat proteins are found in almost all cellular systems, where they are involved in diverse molecular recognition processes. Recent studies have suggested that de novo designed repeat proteins may serve as universal binders, and might potentially be used as practical alternative to antibodies. We describe here a novel chemical methodology for producing small libraries of repeat proteins, and screening in parallel the ligand binding of library members. The first stage of this research involved the total synthesis of a consensus-based three-repeat tetratricopeptide (TPR) protein (~14 kDa), via sequential attachment of the respective peptides. Despite the effectiveness of the synthesis and ligation steps, this method was found to be too demanding for the production of proteins containing variable number of repeats. Additionally, the analysis of binding of the individual proteins was time consuming. Therefore, we designed and prepared novel dynamic combinatorial libraries (DCLs), and show that their equilibration can facilitate the formation of TPR proteins containing up to eight repeating units. Interestingly, equilibration of the library building blocks in the presence of the biologically relevant ligands, Hsp90 and Hsp70, induced their oligomerization into forming more of the proteins with large recognition surfaces. We suggest that this work presents a novel simple and rapid tool for the simultaneous screening of protein mixtures with variable binding surfaces, and for identifying new binders for ligands of interest.

  11. The maize pentatricopeptide repeat gene empty pericarp4 (emp4) is required for proper cellular development in vegetative tissues.

    PubMed

    Gabotti, Damiano; Caporali, Elisabetta; Manzotti, Priscilla; Persico, Martina; Vigani, Gianpiero; Consonni, Gabriella

    2014-06-01

    The empty pericarp4 (emp4) gene encodes a mitochondrion-targeted pentatricopeptide repeat (ppr) protein that is involved in the regulation of mitochondrial gene expression and is required for seed development. In homozygous mutant emp4-1 kernels the endosperm is drastically reduced and the embryo is retarded in its development and unable to germinate. With the aim of investigating the role of emp4 during post-germinative development, homozygous mutant seedlings were obtained by cultivation of excised immature embryos on a synthetic medium. In the mutants both germination frequency as well as the proportion of seedlings reaching the first and second leaf stages were reduced. The anatomy of the leaf blades and the root cortex was not affected by the mutation, however severe alterations such as the presence of empty cells or cells containing poorly organized organelles, were observed. Moreover both mitochondria and chloroplast functionality was impaired in the mutants. Our hypothesis is that mitochondrial impairment, the primary effect of the mutation, causes secondary effects on the development of other cellular organelles. Ultra-structural features of mutant leaf blade mesophyll cells are reminiscent of cells undergoing senescence. Interestingly, both structural and functional damage was less severe in seedlings grown in total darkness compared with those exposed to light, thus suggesting that the effects of the mutation are enhanced by the presence of light. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

  12. Proliferating cell nuclear antigen prevents trinucleotide repeat expansions by promoting repeat deletion and hairpin removal

    PubMed Central

    Beaver, Jill M.; Lai, Yanhao; Rolle, Shantell J.; Liu, Yuan

    2017-01-01

    DNA base lesions and base excision repair (BER) within trinucleotide repeat (TNR) tracts modulate repeat instability through the coordination among the key BER enzymes DNA polymerase β, flap endonuclease 1 (FEN1) and DNA ligase I (LIG I). However, it remains unknown whether BER cofactors can also alter TNR stability. In this study, we discovered that proliferating cell nuclear antigen (PCNA), a cofactor of BER, promoted CAG repeat deletion and removal of a CAG repeat hairpin during BER in a duplex CAG repeat tract and CAG hairpin loop, respectively. We showed that PCNA stimulated LIG I activity on a nick across a small template loop during BER in a duplex (CAG)20 repeat tract promoting small repeat deletions. Surprisingly, we found that during BER in a hairpin loop, PCNA promoted reannealing of the upstream flap of a double-flap intermediate, thereby facilitating the formation of a downstream flap and stimulating FEN1 cleavage activity and hairpin removal. Our results indicate that PCNA plays a critical role in preventing CAG repeat expansions by modulating the structures of dynamic DNA via cooperation with BER enzymes. We provide the first evidence that PCNA prevents CAG repeat expansions during BER by promoting CAG repeat deletion and removal of a TNR hairpin. PMID:27793507

  13. Relationship of social support and social burden to repeated breast cancer screening in the women's health initiative.

    PubMed

    Messina, Catherine R; Lane, Dorothy S; Glanz, Karen; West, Delia Smith; Taylor, Vicky; Frishman, William; Powell, Lynda

    2004-11-01

    Direct and interactive effects of social support, social burden (caregiving, negative life events, and social strain), education, and income on repeated use of breast cancer screening among a large (N=55,278), national sample of postmenopausal women participating in the Women's Health Initiative observational study were examined. Repeated screening decreased as emotional/informational support and positive social interactions decreased (ps<.01). Repeated mammography decreased with frequent caregiving (p<.01). Less social strain reduced the frequency of repeated breast self-examinations (BSEs; ps<.01), but frequent caregiving and more negative life events increased repeated use of BSE (ps<.01). Interactive effects suggested that emotional/informational but not tangible support is associated with repeated mammography and clinical breast examinations (ps<.01) and may be particularly important among low-income older women, especially those burdened by caregiving.

  14. Improving cellulase productivity of Penicillium oxalicum RE-10 by repeated fed-batch fermentation strategy.

    PubMed

    Han, Xiaolong; Song, Wenxia; Liu, Guodong; Li, Zhonghai; Yang, Piao; Qu, Yinbo

    2017-03-01

    Medium optimization and repeated fed-batch fermentation were performed to improve the cellulase productivity by P. oxalicum RE-10 in submerged fermentation. First, Plackett-Burman design (PBD) and central composite design (CCD) were used to optimize the medium for cellulase production. PBD demonstrated wheat bran and NaNO3 had significant influences on cellulase production. The CCD results showed the maximum filter paper activity (FPA) production of 8.61U/mL could be achieved in Erlenmeyer flasks. The maximal FPA reached 12.69U/mL by submerged batch fermentation in a 7.5-L stirred tank, 1.76-fold higher than that on the original medium. Then, the repeated fed-batch fermentation strategy was performed successfully for increasing the cellulase productivity from 105.75U/L/h in batch fermentation to 158.38U/L/h. The cellulase activity and the glucan conversion of delignined corn cob residue hydrolysis had no significant difference between the enzymes sampled from different cycles of the repeated fed-batch fermentation and that from batch culture. Copyright © 2016 Elsevier Ltd. All rights reserved.

  15. Measurement of soil water content with dielectric dispersion frequency

    USDA-ARS?s Scientific Manuscript database

    Frequency domain reflectometry (FDR) is an inexpensive and attractive methodology for repeated measurements of soil water content (SWC). Although there are some known measurement limitations for dry soil and sand, a fixed-frequency method is commonly employed using commercially available FDR probes....

  16. Repeatability of electrically-evoked myoelectric signals in the human tibialis anterior muscle.

    PubMed

    Merletti, R; Lo Conte, L R; Sathyan, D

    1995-06-01

    The reproducibility of surface myoelectric signal measurements is of paramount importance for clinical applications of electromyography (EMG) techniques. The repeatability of electrically-evoked myoelectric signal shape (M-wave) as well as spectral and amplitude parameters, conduction velocity and elicited torque was tested, in isometric conditions, on the tibialis anterior muscle of 10 normal subjects. Contractions were elicited by stimulation of the main muscle motor point and repeated after removal and replacement of the stimulation and detection electrodes in the same carefully marked locations. This protocol was repeated five times on each subject on five different days. The test-retest Pearson correlation coefficient, the paired t test and analysis of variance (ANOVA) were used to quantify repeatability and estimate the fraction of variance due to repeated trials within experiments, repeated experiments within subjects and inter-subject variability. Results indicate that parameters of spectral variables are more repeatable than those of amplitude variables. Elicited torque and conduction velocity show the lowest repeatability. The intra-class correlation coefficient ranged from 87.9% for the initial value of median frequency to 11.5% for the initial value of conduction velocity. Fatigue indices based on the time course of the myoelectric signal variables showed even lower values of this coefficient. It is concluded that: (a) initial values and fatigue indices based on spectral variables are more repeatable than those based on amplitude variables; (b) the repeatability of conduction velocity and torque is very poor; (c) M-wave shape, rather than amplitude or width, seems to be a characteristic of individual muscles; and (d) electrode location is a critical issue in the study of M-waves elicited by stimulation of a muscle motor point. The methodology for estimation of muscle fibre conduction velocity must be refined and the characterization of evoked responses

  17. Medium Effects in Parton Distributions

    SciTech Connect

    William Detmold, Huey-Wen Lin

    2011-12-01

    A defining experiment of high-energy physics in the 1980s was that of the EMC collaboration where it was first observed that parton distributions in nuclei are non-trivially related to those in the proton. This result implies that the presence of the nuclear medium plays an important role and an understanding of this from QCD has been an important goal ever since Here we investigate analogous, but technically simpler, effects in QCD and examine how the lowest moment of the pion parton distribution is modified by the presence of a Bose-condensed gas of pions or kaons.

  18. A Heterogeneous Medium Analytical Benchmark

    SciTech Connect

    Ganapol, B.D.

    1999-09-27

    A benchmark, called benchmark BLUE, has been developed for one-group neutral particle (neutron or photon) transport in a one-dimensional sub-critical heterogeneous plane parallel medium with surface illumination. General anisotropic scattering is accommodated through the Green's Function Method (GFM). Numerical Fourier transform inversion is used to generate the required Green's functions which are kernels to coupled integral equations that give the exiting angular fluxes. The interior scalar flux is then obtained through quadrature. A compound iterative procedure for quadrature order and slab surface source convergence provides highly accurate benchmark qualities (4- to 5- places of accuracy) results.

  19. Dynamics of the interstellar medium

    NASA Technical Reports Server (NTRS)

    Jenkins, Edward B.

    1990-01-01

    An extraordinarily rich assortment of electronic transitions of atoms and ions at ultraviolet wavelengths can be exploited to probe the behavior of interstellar gases in different contexts. The Copernicus and IUE (International Ultraviolet Explorer) satellites are used to investigate dynamical phenomena and important physical interactions which develop in separate phases of the medium. Insights on the establishment and overall properties of the mechanical energy created by stellar winds and supernova explosions at specific locations are outlined. Investigations of how multiple sources of energy move the gas and mold its structure over both small and large scales are outlined.

  20. Surface NMR measurement of proton relaxation times in medium to coarse-grained sand aquifer.

    PubMed

    Shushakov, O A

    1996-01-01

    A surface NMR investigation of groundwater in the geomagnetic field is under study. To detect the surface NMR a wire loop with a diameter of about 100 m, being an antenna for both an exciting field source and the NMR signal receiver, is laid out on the ground. A sinusoidal current pulse with a rectangular envelope is passed through the loop to excite the NMR signal. The carrier frequency of the oscillating current in this pulse is equal to the Larmor frequency of protons in the Earth's magnetic field. The current amplitude is changed up to 200 amps and the pulse duration is fixed and is equal to 40 ms. The exciting pulse is followed by an induction emf signal caused by the Larmor nuclear precession in geomagnetic field. The relaxation times T1, T2, and T2* were measured by the surface NMR for both groundwater in medium to coarse-grained sand at borehole and for bulk water under the ice surface of frozen lake. To determine T1, a longitudinal interference in experiments with repeated pulses was measured. A sequence with equal period between equal excitation pulses was used. The relaxation times T1, T2, measured for bulk water under the ice of the Ob reservoir were 1.0 s and 0.7 s, respectively. To estimate an influence of dissolved oxygen T1 of the same water at the same temperature was measured by lab NMR with and without pumping of oxygen. The relaxation time T1 measured for water in the medium to coarse-grained sand is 0.65 s. The relaxation time T2 estimated by spin echo sequence is found to be equal to 0.15 s. The relaxation time T2* is found to be about 80 ms. This result contradicts published earlier phenomenological correlation between relaxation time T2* and grain size of water-bearing rock. This could be as a result of unsound approach based on grain size or influence of paramagnetic impurities.

  1. Low abundance of microsatellite repeats in the genome of the Brown-headed Cowbird (Molothrus ater)

    USGS Publications Warehouse

    Longmire, J.L.; Hahn, D.C.; Roach, J.L.

    1999-01-01

    A cosmid library made from brown-headed cowbird (Molothrus ater) DNA was examined for representation of 17 distinct microsatellite motifs including all possible mono-, di-, and trinucleotide microsatellites, and the tetranucleotide repeat (GATA)n. The overall density of microsatellites within cowbird DNA was found to be one repeat per 89 kb and the frequency of the most abundant motif, (AGC)n, was once every 382 kb. The abundance of microsatellites within the cowbird genome is estimated to be reduced approximately 15-fold compared to humans. The reduced frequency of microsatellites seen in this study is consistent with previous observations indicating reduced numbers of microsatellites and other interspersed repeats in avian DNA. In addition to providing new information concerning the abundance of microsatellites within an avian genome, these results provide useful insights for selecting cloning strategies that might be used in the development of locus-specific microsatellite markers for avian studies.

  2. Genetically-directed Sparse Neuronal Labeling in BAC Transgenic Mice through Mononucleotide Repeat Frameshift

    PubMed Central

    Lu, Xiao-Hong; Yang, X. William

    2017-01-01

    Mosaicism with Repeat Frameshift (MORF) allows a single Bacterial Artificial Chromosome (BAC) transgene to direct sparse labeling of genetically-defined neuronal populations in mice. The BAC transgene drives cell-type-specific transcription of an out-of-frame mononucleotide repeat that is placed between a translational start codon and a membrane-bound fluorescent protein lacking its start codon. The stochastic frameshift of the unstable repeat DNA in a subset of BAC-expressing neurons results in the in-frame translation of the reporter protein hence the sparse neuronal labeling. As a proof-of-concept, we generated D1-dopamine receptor (D1) BAC MORF mice that label about 1% striatal D1-expressing medium spiny neurons and allow visualization of their dendrites. These mice enable the study of D1-MSN dendrite development in wildtype mice, and its degeneration in a mouse model of Huntington’s disease. PMID:28272512

  3. Repeated sequences in bacterial chromosomes and plasmids: a glimpse from sequenced genomes.

    PubMed

    Romero, D; Martínez-Salazar, J; Ortiz, E; Rodríguez, C; Valencia-Morales, E

    1999-01-01

    To gain insight into the extent of exact DNA repeats in sequenced bacterial genomes and their plasmids, we analyzed the collection of completely sequenced bacterial genomes available at GenBank using the program Miropeats. This program draws graphical representations of exact DNA repeats in whole genomes. In this work, we present maps showing the extent and type (inverted or direct) of exact DNA repeats longer than 300 bp for the whole collection. These repeats may participate in a variety of events relevant for bacterial genome plasticity, such as amplifications, deletions, inversions, and translocations (via homologous recombination), as well as transposition. Additionally, we review recent data showing that high-frequency architectural variations in genomic structure occur at both the interspecies and interstrain levels.

  4. Depressive Symptoms and Violence Exposure: Contributors to Repeat Pregnancies Among Adolescents

    PubMed Central

    Anderson, Cheryl A.; Pierce, Lisa

    2015-01-01

    ABSTRACT Depressive symptoms and violence exposure (VE) often cooccur and have been recognized to influence childbearing; contribution to repeat pregnancy is unclear and examined in this article. This cross-sectional, descriptive, study screened for depressive symptoms and VE among 193 adolescent mothers at a large county hospital in Southwestern United States. Repeat pregnancy and depressive symptoms characterized one-third and one-quarter of adolescents, respectively. Despite minimal disclosure of VE, repeat pregnancy was significantly influenced by child abuse and past traumatic life experiences. Assessments and interventions with adolescents should focus on frequency of repeat pregnancies and symptoms of depression and VE. Nurses and childbirth educators are poised to offer birth control information and education, support, and resources highlighting depression and VE to adolescents. PMID:26834444

  5. Repeat Victimization in a High-Risk Neighborhood Sample of Adolescents.

    ERIC Educational Resources Information Center

    Menard, Scott; Huizinga, David

    2001-01-01

    Used longitudinal Denver Youth Survey data to examine repeat victimization and concentration of victimization among a relatively few high-frequency victims and intermittency of victimization in a sample of adolescents in a high-risk neighborhood. Chronic, multiple, intermittent victimization was the usual pattern among respondents. Men had higher…

  6. Turkish population data with the CODIS multiplex short tandem repeat loci.

    PubMed

    Akbasak, B S; Budowle, B; Reeder, D J; Redman, J; Kline, M C

    2001-12-01

    Allele frequencies for 13 tetrameric short tandem repeat (STR) loci, CSF1PO, D18S51, D3S1358, D21S11, D5S818, FGA, D7S820, HUMTH01, D8S1179, TPOX, D13S317, VWA, and D16S539 were determined on 198 Turkish blood samples.

  7. Preferred frequencies for SETI observations

    NASA Astrophysics Data System (ADS)

    Zuckerman, B.

    1983-10-01

    The proper radio bands for observing and transmitting signals to and from other star systems in a search for extraterrestrial intelligence. It is assumed that other civilizations will have developed the energies and other resources of their solar systems, and that they will use electromagnetic radiation as a communications medium. The sizes of the space based antennas that other civilizations might have built are discussed in terms of the resulting interferometers, the possible wavelengths used, and the technological bases assumed. It is suggested that transmissions might be most effective if confined to a few microns bandwidth to which the galaxy is largely transparent. However, no universal, 'magic' frequency can presently be identified, although nondirectional emissions may congregate around the 'water hole' of radio frequencies in the universe.

  8. Genetic variation and evolutionary stability of the FMR1 CGG repeat in six closed human populations

    SciTech Connect

    Eichler, E.E.; Nelson, D.L.

    1996-07-12

    In an attempt to understand the allelic diversity and mutability of the human FMR1 CGG repeat, we have analyzed the AGG substructure of this locus within six genetically-closed populations (Mbuti pygmy, Baka pygmy, R. surui, Karitiana, Mayan, and Hutterite). Most alleles (61/92 or 66%) possessed two AGG interspersions occurring with a periodicity of one AGG every nine or ten CGG repeats, indicating that this pattern is highly conserved in all human populations. Significant differences in allele distribution were observed among the populations for rare variants possessing fewer or more AGG interruptions than the canonical FMR1 CGG repeat sequence. Comparisons of expected heterozygosity of the FMR1 CGG repeat locus with 30 other microsatellite loci, demonstrated remarkably similar levels of polymorphism within each population, suggesting that most FMR1 CGG repeat alleles mutate at rates indistinguishable from other microsatellite loci. A single allele (1 out of 92) was identified with a large uninterrupted tract of pure repeats (42 pure CGG triplets). Retrospective pedigree analysis indicated that this allele had been transmitted unstably. Although such alleles mutate rapidly and likely represent evolving premutations, our analysis suggests that in spite of the estimated frequency of their occurrence, these unstable alleles do not significantly alter the expected heterozygosity of the FMR1 CGG repeat in the human population. 45 refs., 1 fig., 2 tabs.

  9. Most meiotic CAG repeat tract-length alterations in yeast are SPO11 dependent.

    PubMed

    Jankowski, C; Nag, Dilip K

    2002-03-01

    The expansion of trinucleotide repeat sequences associated with hereditary neurological diseases is believed from earlier studies to be due to errors in DNA replication. However, more recent studies have indicated that recombination may play a significant role in triplet repeat expansion. CAG repeat tracts have been shown to induce double-strand breaks (DSBs) during meiosis in yeast, and DSB formation is dependent on the meiotic recombination machinery. The rate of meiotic instability is several fold higher than mitotic instability. To determine whether DSB repair is responsible for the high rate of repeat tract-length alterations, the frequencies of meiotic repeat-tract instability were compared in wild-type and spo11 mutant strains. In the spo11 background, the rate of meiotic repeat-tract instability remained at the mitotic level, suggesting that meiotic alterations of CAG repeat tracts in yeast occur by the recombination mechanism. Several of these meiotic tract-length alterations are due to DSB repair involving use of the sister chromatid as a template.

  10. How Does the Medium Affect the Message?

    ERIC Educational Resources Information Center

    Dommermuth, William P.

    1974-01-01

    This experimental comparison of the advertising effectiveness of television, movies, radio, and print finds no support for McLuhan's idea that television is a "cool" medium and movies are a "hot" medium. (RB)

  11. How Does the Medium Affect the Message?

    ERIC Educational Resources Information Center

    Dommermuth, William P.

    1974-01-01

    This experimental comparison of the advertising effectiveness of television, movies, radio, and print finds no support for McLuhan's idea that television is a "cool" medium and movies are a "hot" medium. (RB)

  12. Automated genotyping of dinucleotide repeat markers

    SciTech Connect

    Perlin, M.W.; Hoffman, E.P. |

    1994-09-01

    The dinucleotide repeats (i.e., microsatellites) such as CA-repeats are a highly polymorphic, highly abundant class of PCR-amplifiable markers that have greatly streamlined genetic mapping experimentation. It is expected that over 30,000 such markers (including tri- and tetranucleotide repeats) will be characterized for routine use in the next few years. Since only size determination, and not sequencing, is required to determine alleles, in principle, dinucleotide repeat genotyping is easily performed on electrophoretic gels, and can be automated using DNA sequencers. Unfortunately, PCR stuttering with these markers generates not one band for each allele, but a pattern of bands. Since closely spaced alleles must be disambiguated by human scoring, this poses a key obstacle to full automation. We have developed methods that overcome this obstacle. Our model is that the observed data is generated by arithmetic superposition (i.e., convolution) of multiple allele patterns. By quantitatively measuring the size of each component band, and exploiting the unique stutter pattern associated with each marker, closely spaced alleles can be deconvolved; this unambiguously reconstructs the {open_quotes}true{close_quotes} allele bands, with stutter artifact removed. We used this approach in a system for automated diagnosis of (X-linked) Duchenne muscular dystrophy; four multiplexed CA-repeats within the dystrophin gene were assayed on a DNA sequencer. Our method accurately detected small variations in gel migration that shifted the allele size estimate. In 167 nonmutated alleles, 89% (149/167) showed no size variation, 9% (15/167) showed 1 bp variation, and 2% (3/167) showed 2 bp variation. We are currently developing a library of dinucleotide repeat patterns; together with our deconvolution methods, this library will enable fully automated genotyping of dinucleotide repeats from sizing data.

  13. Turbulence in the Intracluster Medium

    NASA Astrophysics Data System (ADS)

    Brüggen, M.; Vazza, F.

    We review our knowledge about turbulence in the intracluster medium, a very hot, dilute plasma that permeates clusters of galaxies. A thorough understanding of turbulence in the intracluster medium is crucial for the use of clusters to determine cosmological parameters. Moreover, clusters provide a unique laboratory to study a very unique and extreme plasma. Both, the observational evidence as well as results from (magneto-)hydrodynamical simulations are reviewed. In particular, we assess the roles of various drivers of turbulence: accretion and merging, active galactic nuclei, the motion of galaxies and conductive instabilities. It has been shown that the turbulence driven by accretion in galaxy clusters is mostly tangential in the inner regions and isotropic in regions close to the virial radius, while AGN drive mostly radial turbulent motions at close to sonic speeds. On the cluster scale, the energetically dominant mechanism for driving turbulence are major cluster mergers. In this chapter, we will focus on turbulent motions on the large scales—the properties of microphysical turbulence are reviewed elsewhere in this book (see the chapter by Brunetti and Jones).

  14. Wave propagation in a strongly heterogeneous elastic porous medium: Homogenization of Biot medium with double porosities

    NASA Astrophysics Data System (ADS)

    Rohan, Eduard; Naili, Salah; Nguyen, Vu-Hieu

    2016-08-01

    We study wave propagation in an elastic porous medium saturated with a compressible Newtonian fluid. The porous network is interconnected whereby the pores are characterized by two very different characteristic sizes. At the mesoscopic scale, the medium is described using the Biot model, characterized by a high contrast in the hydraulic permeability and anisotropic elasticity, whereas the contrast in the Biot coupling coefficient is only moderate. Fluid motion is governed by the Darcy flow model extended by inertia terms and by the mass conservation equation. The homogenization method based on the asymptotic analysis is used to obtain a macroscopic model. To respect the high contrast in the material properties, they are scaled by the small parameter, which is involved in the asymptotic analysis and characterized by the size of the heterogeneities. Using the estimates of wavelengths in the double-porosity networks, it is shown that the macroscopic descriptions depend on the contrast in the static permeability associated with pores and micropores and on the frequency. Moreover, the microflow in the double porosity is responsible for fading memory effects via the macroscopic poroviscoelastic constitutive law. xml:lang="fr"

  15. Shared selective pressure and local genomic landscape lead to repeatable patterns of genomic divergence in sunflowers.

    PubMed

    Renaut, Sebastien; Owens, Gregory L; Rieseberg, Loren H

    2014-02-01

    The repeated evolution of traits in organisms facing similar environmental conditions is considered to be fundamental evidence for the role of natural selection in moulding phenotypes. Yet, aside from case studies of parallel evolution and its genetic basis, the repeatability of evolution at the level of the whole genome remains poorly characterized. Here, through the use of transcriptome sequencing, we examined genomic divergence for three pairs of sister species of sunflowers. Two of the pairs (Helianthus petiolaris - H. debilis and H. annuus - H. argophyllus) have diverged along a similar latitudinal gradient and presumably experienced similar selective pressure. In contrast, a third species pair (H. exilis - H. bolanderi) diverged along a longitudinal gradient. Analyses of divergence, as measured in terms of FST, indicated little repeatability across the three pairs of species for individual genetic markers (SNPs), modest repeatability at the level of individual genes and the highest repeatability when large regions of the genome were compared. As expected, higher repeatability was observed for the two species pairs that have diverged along a similar latitudinal gradient, with genes involved in flowering time among the most divergent genes. Genes showing extreme low or high differentiation were more similar than genes showing medium levels of divergence, implying that both purifying and divergent selection contributed to repeatable patterns of divergence. The location of a gene along the chromosome also predicted divergence levels, presumably because of shared heterogeneity in both recombination and mutation rates. In conclusion, repeated genome evolution appeared to result from both similar selective pressures and shared local genomic landscapes.

  16. Indicator medium for isolation of Campylobacter pylori.

    PubMed Central

    Queiroz, D M; Mendes, E N; Rocha, G A

    1987-01-01

    The use of a new indicator culture medium, Belo Horizonte medium, is proposed for better colony recognition and a presumptive identification of Campylobacter pylori. This medium, containing brain heart infusion sheep blood agar, was supplemented with 40 mg of 2,3,5-triphenyltetrazolium chloride per liter in addition to vancomycin, nalidixic acid, and amphotericin B. On Belo Horizonte medium, Campylobacter pylori present unique golden colonies. PMID:3429628

  17. Electromagnetic field of a charge moving in a chiral isotropic medium.

    PubMed

    Galyamin, Sergey N; Peshkov, Anton A; Tyukhtin, Andrey V

    2013-07-01

    We analyze the electromagnetic field generated by a point charge moving with a constant velocity in an isotropic chiral medium. We work in the frame of the Condon dispersion model for the weak chirality and ultrarelativistic motion of the charge. We show that the field of a moving charge contains two low-frequency wave processes with right- and left-hand circular polarizations and a high-frequency wave process with a right-hand polarization. The low-frequency wave field exists at an arbitrary charge velocity and oscillates at a frequency of the order of the resonant frequency of the medium. This effect is of most importance near the charge trajectory. The high-frequency wave field arises at an ultrahigh velocity and is essential near the plane of charge dislocation for a sufficiently large offset from the trajectory. This wave field oscillates at a frequency that is considerably greater (up to several orders) than the resonant frequency of the medium. Intriguingly, both of these phenomena exist in the domain in front of the charge, thus producing the low- and high-frequency wave forerunners correspondingly.

  18. Mechanical Alterations Associated with Repeated Treadmill Sprinting under Heat Stress

    PubMed Central

    Brocherie, Franck; Morin, Jean-Benoit; Racinais, Sébastien; Millet, Grégoire P.; Périard, Julien D.

    2017-01-01

    Purpose Examine the mechanical alterations associated with repeated treadmill sprinting performed in HOT (38°C) and CON (25°C) conditions. Methods Eleven recreationally active males performed a 30-min warm-up followed by three sets of five 5-s sprints with 25-s recovery and 3-min between sets in each environment. Constant-velocity running for 1-min at 10 and 20 km.h-1 was also performed prior to and following sprinting. Results Mean skin (37.2±0.7 vs. 32.7±0.8°C; P<0.001) and core (38.9±0.2 vs. 38.8±0.3°C; P<0.05) temperatures, together with thermal comfort (P<0.001) were higher following repeated sprinting in HOT vs. CON. Step frequency and vertical stiffness were lower (-2.6±1.6% and -5.5±5.5%; both P<0.001) and contact time (+3.2±2.4%; P<0.01) higher in HOT for the mean of sets 1–3 compared to CON. Running distance per sprint decreased from set 1 to 3 (-7.0±6.4%; P<0.001), with a tendency for shorter distance covered in HOT vs. CON (-2.7±3.4%; P = 0.06). Mean vertical (-2.6±5.5%; P<0.01), horizontal (-9.1±4.4%; P<0.001) and resultant ground reaction forces (-3.0±2.8%; P<0.01) along with vertical stiffness (-12.9±2.3%; P<0.001) and leg stiffness (-8.4±2.7%; P<0.01) decreased from set 1 to 3, independently of conditions. Propulsive power decreased from set 1 to 3 (-16.9±2.4%; P<0.001), with lower propulsive power values in set 2 (-6.6%; P<0.05) in HOT vs. CON. No changes in constant-velocity running patterns occurred between conditions, or from pre-to-post repeated-sprint exercise. Conclusions Thermal strain alters step frequency and vertical stiffness during repeated sprinting; however without exacerbating mechanical alterations. The absence of changes in constant-velocity running patterns suggests a strong link between fatigue-induced velocity decrements during sprinting and mechanical alterations. PMID:28146582

  19. 27 CFR 19.914 - Medium plants.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2010-04-01 2010-04-01 false Medium plants. 19.914... OF THE TREASURY LIQUORS DISTILLED SPIRITS PLANTS Distilled Spirits For Fuel Use Permits § 19.914 Medium plants. Any person wishing to establish a medium plant shall make application for and obtain in...

  20. 49 CFR 195.306 - Test medium.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 49 Transportation 3 2014-10-01 2014-10-01 false Test medium. 195.306 Section 195.306... PIPELINE Pressure Testing § 195.306 Test medium. (a) Except as provided in paragraphs (b), (c), and (d) of this section, water must be used as the test medium. (b) Except for offshore pipelines,...

  1. 49 CFR 195.306 - Test medium.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 49 Transportation 3 2012-10-01 2012-10-01 false Test medium. 195.306 Section 195.306... PIPELINE Pressure Testing § 195.306 Test medium. (a) Except as provided in paragraphs (b), (c), and (d) of this section, water must be used as the test medium. (b) Except for offshore pipelines,...

  2. Particle dynamics in an active medium

    SciTech Connect

    Schaechter, L.

    1997-03-01

    When a point-charge moves in an active medium it can gain energy at the expense of that stored in the medium. The maximum gradient is evaluated and its relation to the energy stored in the medium is established. The dynamics of a distribution of electrons was also examined and it is reported here. {copyright} {ital 1997 American Institute of Physics.}

  3. Frequency synchronization of blue whale calls near Pioneer Seamount.

    PubMed

    Hoffman, Michael D; Garfield, Newell; Bland, Roger W

    2010-07-01

    Vocalizations of blue whales were recorded with a cabled hydrophone array at Pioneer Seamount, 50 miles off the California coast. Most calls occurred in repeated sequences of two-call pairs (A, then B). The B call is a frequency-modulated tone highly repeatable in form and pitch. A model of this sound is described which permits detecting very small frequency shifts. B calls are found to be aligned in frequency to about one part in 180. This requires very fine pitch discrimination and control over calling frequency, and suggests that synchronizing to a common frequency pattern carries some adaptive advantage. Some possibilities for acoustic sensing by whales requiring this fine frequency resolution are discussed.

  4. Relationship between the transition frequency of local fluid flow and the peak frequency of attenuation

    NASA Astrophysics Data System (ADS)

    Cao, Cheng-Hao; Zhang, Hong-Bing; Pan, Yi-Xin; Teng, Xin-Bao

    2016-03-01

    Local fluid flow (LFF) at the mesoscopic scale is the main dissipation mechanism of seismic waves in heterogeneous porous media within the seismic frequency band. LFF is easily influenced by the structure and boundary conditions of the porous media, which leads to different behaviors of the peak frequency of attenuation. The associated transition frequency can provide detailed information about the trend of LFF; therefore, research on the transition frequency of LFF and its relationship with the peak frequency of the corresponding attenuation (i.e., inverse of quality factor) facilitates the detailed understanding of the effect of inner structures and boundary conditions in porous media. In this study, we firstly obtain the transition frequency of fluid flux based on Biot's theory of poroelasticity and the fast Fourier transform algorithm in a sample containing one repeating unit cell (RUC). We then analyze changes of these two frequencies in porous media with different porous properties. Finally, we extend our analysis to the influence of the undrained boundary condition on the transition frequency and peak frequency in porous media with multiple RUCs. This setup can facilitate the understanding of the effect from the undrained boundary condition. Results demonstrate that these two frequencies have the same trend at low water saturation, but amplitude variations differ between the frequencies as the amount of saturation increases. However, for cases of high water saturation, both the trend and the amplitude variation of these two frequencies fit well with each other.

  5. Role of memory errors in quantum repeaters

    NASA Astrophysics Data System (ADS)

    Hartmann, L.; Kraus, B.; Briegel, H.-J.; Dür, W.

    2007-03-01

    We investigate the influence of memory errors in the quantum repeater scheme for long-range quantum communication. We show that the communication distance is limited in standard operation mode due to memory errors resulting from unavoidable waiting times for classical signals. We show how to overcome these limitations by (i) improving local memory and (ii) introducing two operational modes of the quantum repeater. In both operational modes, the repeater is run blindly, i.e., without waiting for classical signals to arrive. In the first scheme, entanglement purification protocols based on one-way classical communication are used allowing to communicate over arbitrary distances. However, the error thresholds for noise in local control operations are very stringent. The second scheme makes use of entanglement purification protocols with two-way classical communication and inherits the favorable error thresholds of the repeater run in standard mode. One can increase the possible communication distance by an order of magnitude with reasonable overhead in physical resources. We outline the architecture of a quantum repeater that can possibly ensure intercontinental quantum communication.

  6. Spectrin repeat proteins in the nucleus.

    PubMed

    Young, Kevin G; Kothary, Rashmi

    2005-02-01

    Spectrin repeat sequences are among the more common repeat elements identified in proteins, typically occurring in large structural proteins. Examples of spectrin repeat-containing proteins include dystrophin, alpha-actinin and spectrin itself--all proteins with well-demonstrated roles of establishing and maintaining cell structure. Over the past decade, it has become clear that, although these proteins display a cytoplasmic and plasma membrane distribution, several are also found both at the nuclear envelope, and within the intranuclear space. In this review, we provide an overview of recent work regarding various spectrin repeat-containing structural proteins in the nucleus. As well, we hypothesize about the regulation of their nuclear localization and possible nuclear functions based on domain architecture, known interacting proteins and evolutionary relationships. Given their large size, and their potential for interacting with multiple proteins and with chromatin, spectrin repeat-containing proteins represent strong candidates for important organizational proteins within the nucleus. Supplementary material for this article can be found on the BioEssays website (http://www.interscience.wiley.com/jpages/0265-9247/suppmat/index.html).

  7. Frequency noise in frequency swept fiber laser.

    PubMed

    Pedersen, Anders Tegtmeier; Rottwitt, Karsten

    2013-04-01

    This Letter presents a measurement of the spectral content of frequency shifted pulses generated by a lightwave synthesized frequency sweeper. We found that each pulse is shifted in frequency with very high accuracy. We also discovered that noise originating from light leaking through the acousto- optical modulators and forward propagating Brillouin scattering appear in the spectrum.

  8. Efficacy and safety of repeated oral sucrose for repeated procedural pain in neonates: A systematic review.

    PubMed

    Gao, Haixia; Gao, Honglian; Xu, Guihua; Li, Mei; Du, Shizheng; Li, Fang; Zhang, Hua; Wang, Danwen

    2016-10-01

    Although sucrose is most extensively examined for its analgesia effect on a single procedural pain, neonates in neonatal intensive care units can be exposed to numerous painful procedures every day requiring multiple doses of sucrose. Some experiments have been performed to examine the efficacy and safety of repeated sucrose administration for repeated procedural pain; however, a systematic review of this topic has not yet been carried out. To identify and assess the evidence demonstrating the efficacy and safety of repeated sucrose for repeated procedural pain in neonates. A systematic review was conducted using the Cochrane methodology. Pubmed, Cochrane Library, Web of Science, CINAHL (Cumulative Index to Nursing and Allied Health Literature), CBMdisc, CNKI, VIP, and Wanfang databases were searched through December 2015. All related abstracts were reviewed and the full texts of relevant articles were studied. Randomized controlled trials (RCTs) were included. Risk of bias was assessed for RCTs using quality critical appraisal criteria recommended by Cochrane Handbook. A standardised data form was used to extract information. Eight RCTs met our inclusion criteria. Different study designs were used in the included RCTs, which did not allow us to carry out a meta-analysis. The findings from this review indicated that repeated sucrose was effective in reducing both behavioral pain response and composite pain scores during repeated procedural pain. However, as for physiological pain response, one trial found less variability in physiological pain response for term neonates in the sucrose group than the sterile water group, while two trials demonstrated repeated sucrose was inefficacious for preterm neonates. Regarding the clinical outcomes, no study reported adverse effects related to the repeated sucrose administration. Regarding the neurobehavioral development, two trials reported repeated sucrose for repeated procedural pain would not lead to poor neurologic

  9. Rate analysis for a hybrid quantum repeater

    SciTech Connect

    Bernardes, Nadja K.; Loock, Peter van

    2011-01-15

    We present a detailed rate analysis for a hybrid quantum repeater assuming perfect memories and using optimal probabilistic entanglement generation and deterministic swapping routines. The hybrid quantum repeater protocol is based on atomic qubit-entanglement distribution through optical coherent-state communication. An exact, analytical formula for the rates of entanglement generation in quantum repeaters is derived, including a study on the impacts of entanglement purification and multiplexing strategies. More specifically, we consider scenarios with as little purification as possible and we show that for sufficiently low local losses, such purifications are still more powerful than multiplexing. In a possible experimental scenario, our hybrid system can create near-maximally entangled (F=0.98) pairs over a distance of 1280 km at rates of the order of 100 Hz.

  10. Hematuria home screening: repeat testing results.

    PubMed

    Messing, E M; Young, T B; Hunt, V B; Newton, M A; Bram, L L; Vaillancourt, A; Hisgen, W J; Greenberg, E B; Kuglitsch, M E; Wegenke, J D

    1995-07-01

    To determine at what interval screening should be repeated to detect bladder cancer before it becomes muscle invasive 856 men who had 14 negative daily home tests for hematuria with a chemical reagent strip 9 months previously performed repeat tests. Of these men 50 (5.8%) had at least 1 positive test during the second 14-day screening period and 38 were evaluated, 15 of whom (39.5%) had significant urological pathological conditions, including 8 with malignancies. Bladder cancer was noted in 7 men, with no tumor invading the muscularis propria. The finding of 7 bladder cancers in 856 men (0.82%) who had a negative test 9 months previously indicates that bladder cancer has a brief preclinical duration and that testing must be repeated at least annually for screening to detect bladder cancer consistently before invasion occurs.

  11. Scale-invariance in soft gamma repeaters

    NASA Astrophysics Data System (ADS)

    Chang, Zhe; Lin, Hai-Nan; Sang, Yu; Wang, Ping

    2017-06-01

    The statistical properties of the soft gamma repeater SGR J1550-5418 are investigated carefully. We find that the cumulative distributions of fluence, peak flux and duration can be well fitted by a bent power law, while the cumulative distribution of waiting time follows a simple power law. In particular, the probability density functions of fluctuations of fluence, peak flux, and duration have a sharp peak and fat tails, which can be well fitted by a q-Gaussian function. The q values keep approximately steady for different scale intervals, indicating a scale-invariant structure of soft gamma repeaters. Those results support that the origin of soft gamma repeaters is crustquakes of neutron stars with extremely strong magnetic fields. Supported by National Natural Science Foundation of China (11375203, 11675182, 11690022, 11603005), and Fundamental Research Funds for Central Universities (106112016CDJCR301206)

  12. Do gamma-ray burst sources repeat?

    NASA Technical Reports Server (NTRS)

    Meegan, Charles A.; Hartmann, Dieter H.; Brainerd, J. J.; Briggs, Michael S.; Paciesas, William S.; Pendleton, Geoffrey; Kouveliotou, Chryssa; Fishman, Gerald; Blumenthal, George; Brock, Martin

    1995-01-01

    The demonstration of repeated gamma-ray bursts from an individual source would severely constrain burst source models. Recent reports (Quashnock and Lamb, 1993; Wang and Lingenfelter, 1993) of evidence for repetition in the first BATSE burst catalog have generated renewed interest in this issue. Here, we analyze the angular distribution of 585 bursts of the second BATSE catalog (Meegan et al., 1994). We search for evidence of burst recurrence using the nearest and farthest neighbor statistic and the two-point angular correlation function. We find the data to be consistent with the hypothesis that burst sources do not repeat; however, a repeater fraction of up to about 20% of the observed bursts cannot be excluded.

  13. Repeated bout effect is absent in resistance trained men

    PubMed Central

    Falvo, Michael J.; Schilling, Brian K.; Bloomer, Richard J.; Smith, Webb A.

    2009-01-01

    A prior bout of exercise is well known to confer protection from subsequent eccentric bouts (i.e. repeated bout effect; RBE), which may be fostered through neural adaptations, specifically a shift in the frequency content of the surface electromyogram (EMG). It is currently not clear whether chronically resistance trained men are capable of a RBE driven by neural adaptations. Eleven resistance trained men (23.5 ± 3.4 yrs) performed 100 eccentric actions of the barbell bench press exercise, followed by an equivalent bout 14 days later. Indirect markers of muscle damage (i.e. force production, soreness) along with surface EMG were measured before and through 48 h of recovery. Median frequency and maximal isometric force demonstrated time main effects (p > 0.05), but no RBE. A prior bout of eccentric exercise does not confer a RBE for indirect markers of muscle injury or elicit changes in the frequency content of the EMG signal in resistance trained men. PMID:19059793

  14. Large Torque Variations in Two Soft Gamma Repeaters

    NASA Technical Reports Server (NTRS)

    Woods, Peter M.; Kouveliotou, Chryssa; Gogus, Ersin; Finger, Mark H.; Swank, Jean; Markwardt, Craig B.; Hurley, Kevin; vanderKlis, Michiel; Six, N. Frank (Technical Monitor)

    2001-01-01

    We have monitored the pulse frequencies of the two soft gamma repeaters SGR 1806-20 and SGR 1900+14 through the beginning of year 2001 using primarily Rossi X-ray Timing Explorer Proportional Counter Array observations. In both sources, we observe large changes in the spin-down torque up to a factor of approximately 4, which persist for several months. Using long baseline phase-connected timing solutions as well as the overall frequency histories, we construct torque noise power spectra for each SGR. The power spectrum of each source is very red (power-law slope approximately -3.5). These power spectra are consistent in normalization with some accreting systems, yet much steeper in slope than any known accreting source. To the best of our knowledge, torque noise power spectra with a comparably steep frequency dependence have only been seen in young, glitching radio pulsars (e.g. Vela). The observed changes in spin-down rate do not correlate with burst activity, therefore, the physical mechanisms behind each phenomenon are also likely unrelated. Within the context of the magnetar model, seismic activity cannot account for both the bursts and the long-term torque changes unless the seismically active regions are decoupled from one another.

  15. Large Torque Variations in Two Soft Gamma Repeaters

    NASA Technical Reports Server (NTRS)

    Woods, Peter M.; Kouveliotou, Chryssa; Gogus, Ersin; Finger, Mark H.; Swank, Jean; Markwardt, Craig B.; Hurley, Kevin; vanderKlis, Michiel; Six, N. Frank (Technical Monitor)

    2001-01-01

    We have monitored the pulse frequencies of the two soft gamma repeaters SGR 1806-20 and SGR 1900+14 through the beginning of year 2001 using primarily Rossi X-ray Timing Explorer Proportional Counter Array observations. In both sources, we observe large changes in the spin-down torque up to a factor of approximately 4, which persist for several months. Using long baseline phase-connected timing solutions as well as the overall frequency histories, we construct torque noise power spectra for each SGR. The power spectrum of each source is very red (power-law slope approximately -3.5). These power spectra are consistent in normalization with some accreting systems, yet much steeper in slope than any known accreting source. To the best of our knowledge, torque noise power spectra with a comparably steep frequency dependence have only been seen in young, glitching radio pulsars (e.g. Vela). The observed changes in spin-down rate do not correlate with burst activity, therefore, the physical mechanisms behind each phenomenon are also likely unrelated. Within the context of the magnetar model, seismic activity cannot account for both the bursts and the long-term torque changes unless the seismically active regions are decoupled from one another.

  16. Sintered composite medium and filter

    DOEpatents

    Bergman, Werner

    1987-01-01

    A particulate filter medium is formed of a sintered composite of 0.5 micron diameter quartz fibers and 2 micron diameter stainless steel fibers. A preferred composition is about 40 vol. % quartz and about 60 vol. % stainless steel fibers. The media is sintered at about 1100.degree. C. to bond the stainless steel fibers into a cage network which holds the quartz fibers. High filter efficiency and low flow resistance are provided by the smaller quartz fibers. High strength is provided by the stainless steel fibers. The resulting media has a high efficiency and low pressure drop similar to the standard HEPA media, with tensile strength at least four times greater, and a maximum operating temperature of about 550.degree. C. The invention also includes methods to form the composite media and a HEPA filter utilizing the composite media. The filter media can be used to filter particles in both liquids and gases.

  17. Theory of interstellar medium diagnostics

    NASA Technical Reports Server (NTRS)

    Fahr, H. J.

    1983-01-01

    The theoretical interpretation of observed interplanetary resonance luminescence patterns is used as one of the must promising methods to determine the state of the local interstellar medium (LISM). However, these methods lead to discrepant results that would be hard to understand in the framework of any physical LISM scenario. Assuming that the observational data are reliable, two possibilities which could help to resolve these discrepancies are discussed: (1) the current modeling of resonance luminescence patterns is unsatisfactory and has to be improved, and (2) the extrapolated interstellar parameters are not indicative of the unperturbed LISM state, but rather designate an intermediate state attained in the outer regions of the solar system. It is shown that a quantitative treatment of the neutral gas-plasma interaction effects in the interface between the heliospheric and the interstellar plasmas is of major importance for the correct understanding of the whole complex.

  18. Hadrons in the Nuclear Medium

    SciTech Connect

    S. Strauch, S. Malace, M. Paolone

    2011-11-01

    Nucleon properties are modified in the nuclear medium. To understand these modifications and their origin is a central issue in nuclear physics. For example, a wide variety of QCD-based models, including quark-meson coupling and chiral-quark soliton models, predict that the nuclear constituents change properties with increasing density. These changes are predicted to lead to observable changes in the nucleon structure functions and electromagnetic form factors. We present results from a series of recent experiments at MAMI and Jefferson Lab, which measured the proton recoil polarization in the {sup 4}He({rvec e},e{prime}{rvec p}){sup 3}H reaction to test these predictions. These results, with the most precise data at Q{sup 2} = 0.8 (GeV/c){sup 2} and at 1.3 (GeV/c){sup 2} from E03-104, put strong constraints on available model calculations, such that below Q{sup 2} = 1.3 (GeV/c){sup 2} the measured ratios of polarization-transfer are successfully described in a fully relativistic calculation when including a medium modification of the proton form factors or, alternatively, by strong charge-exchange final-state interactions. We also discuss possible extensions of these studies with measurements of the {sup 4}He({rvec e},e{prime}{rvec p}){sup 3}H and {sup 2}H({rvec e},e{prime}{rvec p})n reactions as well as with the neutron knockout in {sup 4}He({rvec e},e{prime}{rvec n}){sup 3}He.

  19. Safety of Repeated Yttrium-90 Radioembolization

    SciTech Connect

    Lam, Marnix G. E. H.; Louie, John D.; Iagaru, Andrei H.; Goris, Michael L.; Sze, Daniel Y.

    2013-10-15

    Purpose: Repeated radioembolization (RE) treatments carry theoretically higher risk of radiation-induced hepatic injury because of the liver's cumulative memory of previous exposure. We performed a retrospective safety analysis on patients who underwent repeated RE. Methods: From 2004 to 2011, a total of 247 patients were treated by RE. Eight patients (5 men, 3 women, age range 51-71 years) underwent repeated treatment of a targeted territory, all with resin microspheres (SIR-Spheres; Sirtex, Lane Cove, Australia). Adverse events were graded during a standardized follow-up. In addition, the correlation between the occurrence of RE-induced liver disease (REILD) and multiple variables was investigated in univariate and multivariate analyses in all 247 patients who received RE. Results: Two patients died shortly after the second treatment (at 84 and 107 days) with signs and symptoms of REILD. Both patients underwent whole liver treatment twice (cumulative doses 3.08 and 2.66 GBq). The other 6 patients demonstrated only minor toxicities after receiving cumulative doses ranging from 2.41 to 3.88 GBq. All patients experienced objective tumor responses. In the whole population, multifactorial analysis identified three risk factors associated with REILD: repeated RE (p = 0.036), baseline serum total bilirubin (p = 0.048), and baseline serum aspartate aminotransferase (p = 0.043). Repeated RE proved to be the only independent risk factor for REILD in multivariate analysis (odds ratio 9.6; p = 0.002). Additionally, the administered activity per target volume (in GBq/L) was found to be an independent risk factor for REILD, but only in whole liver treatments (p = 0.033). Conclusion: The risk of REILD appears to be elevated for repeated RE. Objective tumor responses were observed, but establishment of safety limits will require improvement in dosimetric measurement and prediction.

  20. The puzzle of the triple repeats

    SciTech Connect

    Morell, V.

    1993-06-04

    Two years ago, when researchers discovered the gene that causes a hereditary form of mental retardation known as fragile-X syndrome, they also turned up a mutation so unexpected geneticists are still scratching their heads over it. The defect, which makes genes balloon in size by adding extra copies of a three base-pair repeated sequence of DNA, was the first of its kind. Despite decades of study, nothing like it had ever been seen in any of the species that laid the foundations for modern genetics: bacteria, the fruit fly Drosophila melanogaster, and the mouse. The mutations caused by these expanding trinucleotide repeats turned out be common causes of human disease. In the past 2 years, they have been fingered as the culprits in three hereditary disorders besides fragile-X syndrome: myotronic dystrophy, spinobullar muscular atrophy (also known as Kennedy's disease), and just this March-Huntington's disease. The FMR-1 gene, which is the one at fault in fragile-X syndrome, shows just how much the trinucleotide repeats can expand. The normal gene carries at most 50 copies of the CGG trinucleotide. But in children who inherit the gene from these carriers and actually develop mental retardation and the other fragile-X symptoms, the FMR-1 gene may have hundreds to thousands of CGG repeats. Huge expansions of another trinucleotide repeat (CTG) can also occur from one generation to the next in the gene that causes myotonic dystrophy (DM), while smaller, although no less devastating, expansions in the CAG trinucleotide repeat lead to Huntington's and Kennedy's diseases.

  1. Repeat Gamma Knife Radiosurgery for Trigeminal Neuralgia

    SciTech Connect

    Aubuchon, Adam C.; Chan, Michael D.; Lovato, James F.; Balamucki, Christopher J.; Ellis, Thomas L.; Tatter, Stephen B.; McMullen, Kevin P.; Munley, Michael T.; Deguzman, Allan F.; Ekstrand, Kenneth E.; Bourland, J. Daniel; Shaw, Edward G.

    2011-11-15

    Purpose: Repeat gamma knife stereotactic radiosurgery (GKRS) for recurrent or persistent trigeminal neuralgia induces an additional response but at the expense of an increased incidence of facial numbness. The present series summarized the results of a repeat treatment series at Wake Forest University Baptist Medical Center, including a multivariate analysis of the data to identify the prognostic factors for treatment success and toxicity. Methods and Materials: Between January 1999 and December 2007, 37 patients underwent a second GKRS application because of treatment failure after a first GKRS treatment. The mean initial dose in the series was 87.3 Gy (range, 80-90). The mean retreatment dose was 84.4 Gy (range, 60-90). The dosimetric variables recorded included the dorsal root entry zone dose, pons surface dose, and dose to the distal nerve. Results: Of the 37 patients, 81% achieved a >50% pain relief response to repeat GKRS, and 57% experienced some form of trigeminal dysfunction after repeat GKRS. Two patients (5%) experienced clinically significant toxicity: one with bothersome numbness and one with corneal dryness requiring tarsorraphy. A dorsal root entry zone dose at repeat treatment of >26.6 Gy predicted for treatment success (61% vs. 32%, p = .0716). A cumulative dorsal root entry zone dose of >84.3 Gy (72% vs. 44%, p = .091) and a cumulative pons surface dose of >108.5 Gy (78% vs. 44%, p = .018) predicted for post-GKRS numbness. The presence of any post-GKRS numbness predicted for a >50% decrease in pain intensity (100% vs. 60%, p = .0015). Conclusion: Repeat GKRS is a viable treatment option for recurrent trigeminal neuralgia, although the patient assumes a greater risk of nerve dysfunction to achieve maximal pain relief.

  2. Formation of the Arabidopsis pentatricopeptide repeat family.

    PubMed

    Rivals, Eric; Bruyère, Clémence; Toffano-Nioche, Claire; Lecharny, Alain

    2006-07-01

    In Arabidopsis (Arabidopsis thaliana) the 466 pentatricopeptide repeat (PPR) proteins are putative RNA-binding proteins with essential roles in organelles. Roughly half of the PPR proteins form the plant combinatorial and modular protein (PCMP) subfamily, which is land-plant specific. PCMPs exhibit a large and variable tandem repeat of a standard pattern of three PPR variant motifs. The association or not of this repeat with three non-PPR motifs at their C terminus defines four distinct classes of PCMPs. The highly structured arrangement of these motifs and the similar repartition of these arrangements in the four classes suggest precise relationships between motif organization and substrate specificity. This study is an attempt to reconstruct an evolutionary scenario of the PCMP family. We developed an innovative approach based on comparisons of the proteins at two levels: namely the succession of motifs along the protein and the amino acid sequence of the motifs. It enabled us to infer evolutionary relationships between proteins as well as between the inter- and intraprotein repeats. First, we observed a polarized elongation of the repeat from the C terminus toward the N-terminal region, suggesting local recombinations of motifs. Second, the most N-terminal PPR triple motif proved to evolve under different constraints than the remaining repeat. Altogether, the evidence indicates different evolution for the PPR region and the C-terminal one in PCMPs, which points to distinct functions for these regions. Moreover, local sequence homogeneity observed across PCMP classes may be due to interclass shuffling of motifs, or to deletions/insertions of non-PPR motifs at the C terminus.

  3. Repeatability of peripheral aberrations in young emmetropes.

    PubMed

    Baskaran, Karthikeyan; Theagarayan, Baskar; Carius, Staffan; Gustafsson, Jörgen

    2010-10-01

    The purpose of this study is to assess the intrasession repeatability of ocular aberration measurements in the peripheral visual field with a commercially available Shack-Hartmann aberrometer (complete ophthalmic analysis system-high definition-vision research). The higher-order off-axis aberrations data in young healthy emmetropic eyes are also reported. The aberrations of the right eye of 18 emmetropes were measured using an aberrometer with an open field of view that allows peripheral measurements. Five repeated measures of ocular aberrations were obtained and assessed in steps of 10° out to ±40° in the horizontal visual field (nasal + and temporal -) and -20° in the inferior visual field. The coefficient of repeatability, coefficient of variation, and the intraclass correlation coefficient were calculated as a measure of intrasession repeatability. In all eccentric angles, the repeatability of the third- and fourth-order aberrations was better than the fifth and sixth order aberrations. The coefficient of variation was <30% and the intraclass correlation coefficient was >0.90 for the third and fourth order but reduced gradually for higher orders. There was no statistical significant difference in variance of total higher-order root mean square between on- and off-axis measurements (p > 0.05). The aberration data in this group of young emmetropes showed that the horizontal coma (C(3)(1)) was most positive at 40° in the temporal field, decreasing linearly toward negative values with increasing off-axis angle into the nasal field, whereas all other higher-order aberrations showed little or no change. The complete ophthalmic analysis system-high definition-vision research provides fast, repeatable, and valid peripheral aberration measurements and can be used efficiently to measure off-axis aberrations in the peripheral visual field.

  4. Therapeutics development for triplet repeat expansion diseases.

    PubMed

    Di Prospero, Nicholas A; Fischbeck, Kenneth H

    2005-10-01

    The underlying genetic mutations for many inherited neurodegenerative disorders have been identified in recent years. One frequent type of mutation is trinucleotide repeat expansion. Depending on the location of the repeat expansion, the mutation might result in a loss of function of the disease gene, a toxic gain of function or both. Disease gene identification has led to the development of model systems for investigating disease mechanisms and evaluating treatments. Examination of experimental findings reveals similarities in disease mechanisms as well as possibilities for treatment.

  5. [VESTIBULAR FUNCTION AFTER REPEATED SPACE FLIGHTS].

    PubMed

    Naumov, I A; Kornilova, L N; Glukhikh, D O; Pavlova, A S; Khabarova, E V; Ekimovsky, G A; Vasin, A V

    2015-01-01

    Results of the vestibular function testing of 32 cosmonauts on return from repeated 125- to 215-day space flights (SF) on the International space station are presented. The cosmonauts were tested twice before flight (baseline data collection) and on days 1-2, 4-5 and 8-9 after landing. Electro- and video-oculography were used to register simultaneously eye and head movements. It was found that deadaptation following a repeated stay in long-duration SF takes statistically much shorter time. Most often, atypical vestibular disorders and changed patterns of the otolith-semicircular canal interaction are observed in cosmonauts who have made their maiden flights to microgravity.

  6. Epigenetic Repeat-Induced Gene Silencing in the Chromosomal and Extrachromosomal Contexts in Human Cells

    PubMed Central

    Mitsuda, Sho-hei; Shimizu, Noriaki

    2016-01-01

    A plasmid bearing both a replication initiation region and a matrix attachment region is spontaneously amplified in transfected mammalian cells and generates plasmid repeats in the extrachromosomal double minutes (DMs) or the chromosomal homogeneously staining region (HSR). Generally, the repeat sequences are subject to repeat-induced gene silencing, the mechanism of which remains to be elucidated. Previous research showed that gene expression from the same plasmid repeat was higher from repeats located at DMs than at the HSR, which may reflect the extrachromosomal environment of the DMs. In the current study, plasmid repeats in both DMs and HSR were associated with repressive histone modifications (H3K9me3, H3K9me2), and the levels of repressive chromatin markers were higher in HSR than in DMs. Inactive chromatin is known to spread to neighboring regions in chromosome arm. Here, we found that such spreading also occurs in extrachromosomal DMs. Higher levels of active histone modifications (H3K9Ac, H3K4me3, and H3K79me2) were detected at plasmid repeats in DMs than in HSR. The level of DNA CpG methylation was generally low in both DMs and HSR; however, there were some hypermethylated copies within the population of repeated sequences, and the frequency of such copies was higher in DMs than in HSR. Together, these data suggest a “DNA methylation-core and chromatin-spread” model for repeat-induced gene silencing. The unique histone modifications at the extrachromosomal context are discussed with regard to the model. PMID:27525955

  7. Frequency-Dependent Attenuation of Blasting Vibration Waves

    NASA Astrophysics Data System (ADS)

    Zhou, Junru; Lu, Wenbo; Yan, Peng; Chen, Ming; Wang, Gaohui

    2016-10-01

    The dominant frequency, in addition to the peak particle velocity, is a critical factor for assessing adverse effects of the blasting vibration on surrounding structures; however, it has not been fully considered in blasting design. Therefore, the dominant frequency-dependent attenuation mechanism of blast-induced vibration is investigated in the present research. Starting with blasting vibration induced by a spherical charge propagating in an infinite viscoelastic medium, a modified expression of the vibration amplitude spectrum was derived to reveal the frequency dependency of attenuation. Then, ground vibration induced by more complex and more commonly used cylindrical charge that propagates in a semi-infinite viscoelastic medium was analyzed by numerical simulation. Results demonstrate that the absorptive property of the medium results in the frequency attenuation versus distance, whereas a rapid drop or fluctuation occurs during the attenuation of ground vibration. Fluctuation usually appears at moderate to far field, and the dominant frequency generally decreases to half the original value when rapid drop occurs. The decay rate discrepancy between different frequency components and the multimodal structure of vibration spectrum lead to the unsmooth frequency-dependent attenuation. The above research is verified by two field experiments. Furthermore, according to frequency-based vibration standards, frequency drop and fluctuation should be considered when evaluating blast safety. An optimized piecewise assessment is proposed for more accurate evaluation: With the frequency drop point as the breakpoint, the assessment is divided into two independent sections along the propagating path.

  8. Effect of Repeated Evaluation and Repeated Exposure on Acceptability Ratings of Sentences

    ERIC Educational Resources Information Center

    Zervakis, Jennifer; Mazuka, Reiko

    2013-01-01

    This study investigated the effect of repeated evaluation and repeated exposure on grammatical acceptability ratings for both acceptable and unacceptable sentence types. In Experiment 1, subjects in the Experimental group rated multiple examples of two ungrammatical sentence types (ungrammatical binding and double object with dative-only verb),…

  9. Medium-Based Design: Extending a Medium to Create an Exploratory Learning Environment

    ERIC Educational Resources Information Center

    Rick, Jochen; Lamberty, K. K.

    2005-01-01

    This article introduces "medium-based" design -- an approach to creating "exploratory learning environments" using the method of "extending a medium". First, the characteristics of exploratory learning environments and medium-based design are described and grounded in related work. Particular attention is given to "extending a medium" --…

  10. The effect of seed electrons on the repeatability of atmospheric pressure plasma plume propagation: I. Experiment

    NASA Astrophysics Data System (ADS)

    Nie, L.; Chang, L.; Xian, Y.; Lu, X.

    2016-09-01

    One of the significant differences between the traditional streamers and the plasma jets is the repeatability of their propagation. In this paper, the effect of the seed electron density on the repeatability of the plasma jets is investigated. The seed electron density plays an essential role in the propagation of plasma plume which is in either repeatable mode or random mode depending on the frequency of the applied voltage and the mixture percentage of the working gas. By measuring the propagation velocities and the ignition delay time, it is found that the propagation velocities of the plasma plume are independent of the seed electron density. However, the jitter of the ignition delay time strongly depends on the frequency of the applied voltage and the mixture percentage of the working gas. After detailed analyzing of the experiment results, it is concluded that the minimum seed electron density required for the plasma bullet to propagate in repeatable mode is on the order of 108 cm-3 for gas pressure of 2 × 104 Pa. The minimum required seed electron density for the gas pressure of 4 × 103 Pa is on the order of 107 cm-3. Further analysis shows that, at one atmospheric pressure, the required minimum seed electron density for repeatable mode is on the order of 109 cm-3.

  11. Relationship between brief and prolonged repeated sprint ability.

    PubMed

    Oliver, Jonathan L; Armstrong, Neil; Williams, Craig A

    2009-01-01

    Repeated sprint ability (RSA) is often assessed over a brief time period with limited recovery between sprints; however, it is not known how performance in such tests is related to the ability to perform repeated sprints over a more prolonged duration. Eighteen boys aged 15.3+/-0.5 years completed both a brief and prolonged RSA test on a non-motorised treadmill. The brief RSA test consisted of seven 5s sprints with 20s of recovery between sprints and the prolonged RSA test lasted for 42min and included a 5s sprint every 2min. There was a moderate but significant relationship between the mean speed in both tests (r=0.51, p<0.05). The maximal speed achieved in a single sprint provided strong relationships with both brief RSA speed (r> or =0.72, p<0.001) and prolonged RSA speed (r> or =0.77, p<0.001). Total work done during the brief protocol was significantly correlated to both total work (r=0.81, p<0.001) and total sprint distance (r=0.79, p<0.001) during the prolonged test. There were no significant relationships between percentage decrement scores across the two protocols (r< or =0.33, p>0.05). Maximal speed in a single sprint and total work done during repeated sprints represent general qualities related to RSA that are independent of the test protocol. The mean speed and decrements in performance represent specific RSA qualities, which are dependent on the frequency of sprints and duration of the test protocol.

  12. Structures of designed armadillo-repeat proteins show propagation of inter-repeat interface effects

    PubMed Central

    Reichen, Christian; Madhurantakam, Chaithanya; Hansen, Simon; Grütter, Markus G.; Plückthun, Andreas; Mittl, Peer R. E.

    2016-01-01

    The armadillo repeat serves as a scaffold for the development of modular peptide-recognition modules. In order to develop such a system, three crystal structures of designed armadillo-repeat proteins with third-generation N-caps (YIII-type), four or five internal repeats (M-type) and second-generation C-caps (AII-type) were determined at 1.8 Å (His-YIIIM4AII), 2.0 Å (His-YIIIM5AII) and 1.95 Å (YIIIM5AII) resolution and compared with those of variants with third-generation C-caps. All constructs are full consensus designs in which the internal repeats have exactly the same sequence, and hence identical conformations of the internal repeats are expected. The N-cap and internal repeats M1 to M3 are indeed extremely similar, but the comparison reveals structural differences in internal repeats M4 and M5 and the C-cap. These differences are caused by long-range effects of the C-cap, contacting molecules in the crystal, and the intrinsic design of the repeat. Unfortunately, the rigid-body movement of the C-terminal part impairs the regular arrangement of internal repeats that forms the putative peptide-binding site. The second-generation C-cap improves the packing of buried residues and thereby the stability of the protein. These considerations are useful for future improvements of an armadillo-repeat-based peptide-recognition system. PMID:26894544

  13. AGG interspersions within the FMR1 CGG repeat: Mechanisms and models of triplet repeat instability

    SciTech Connect

    Eichler, E.E.; Nelson, D.L.

    1994-09-01

    Fragile X syndrome CGG repeat alleles are typically classified as normal, premutation, or full mutation based on the length of the repeat in the 5{prime} UTR of the FMR1 gene. The distinction between high-end normals and low-end premutation alleles, however, is not always clear since repeats of similar size differ markedly in their intergenerational stability. This fact suggest that differences in sequence content may play a key role in determining an allele`s predisposition to instability. It has been postulated that the loss of AGG interruptions within the CGG tract may trigger this instability. To test this model, we have developed a simple indirect method to determine the presence or absence of internal AGGs within the FMR1 CGG repeat tract. Analysis of 84 human X chromosomes for the presence of interrupting AGG trinucleotides revealed that most alleles possess two interspersed AGGs at a periodicity of 9 or 10 CGGs. The longest tract of uninterrupted CGG repeats is usually found at the 3{prime} end indicating that variation in the length of the repeat is polar. Alleles containing between 34 and 55 repeats, with documented unstable transmissions, were shown to have lost one or both AGG interruptions when compared to stable alleles of similar length. These comparisons define an instability threshold between 34 and 38 uninterrupted CGG repeats. Analysis of premutation alleles in fragile X syndrome carriers reveals that 70% of these alleles contain a single AGG interruption. Population studies confirm that such highly punctuated FMR1 CGG repeats are virtually static in terms of length variation. These data suggest that the loss of an AGG is an important mutational event in the generation of unstable alleles predisposed to the fragile X syndrome. Loss of AGG trinucleotides and polarized variability support Okazaki fragment slippage as a model for CGG repeat instability and hyperexpansion.

  14. Calculation of natural oscillations of a resonator with a doppler-broadened active medium linear with respect to the field

    SciTech Connect

    Glushchenko, Y.V.; Radina, T.V.; Radin, A.M.

    1995-02-01

    A linear self-consistent model of laser generation in an anisotropic active medium is constructed. The nonreciprocal character of field distributions of waves circulating in a ring resonator in counter directions, which is caused by an active medium, is found and analyzed. Corrections to mode frequencies and threshold gain are determined. 3 refs.

  15. Precision orbit determination for the GEOSAT exact repeat mission

    NASA Astrophysics Data System (ADS)

    Smith, J. C.; Ries, J. C.; Shum, C. K.; Schutz, B. E.; Tapley, B. D.

    The Navy's Geodetic Satellite (GEOSAT) was launched on March 12, 1985, carrying a single-frequency microwave altimeter which measures the height of the satellite above the ocean surface to a precision of a few centimeters. The GEOSAT Exact Repeat Mission (ERM), which was initiated in November of 1986, placed the spacecraft in an exact 17 day repeat orbit. The Geophysical Data Records (GDR) for the ERM are available to the scientific community. GEOSAT is tracked by the Navy's OPNET and the Defense Mapping Agency's TRANET doppler tracking systems. The GDR orbits are computed using the OPNET tracking data and have an rms radial accuracy of one to two meters. The initial eighty days of the TRANET data during the ERM were made available for the assessment of the TRANET tracking system to perform precision orbit determination for the Topex/Poseidon Mission. This data was used to compute GEOSAT orbits using an improved gravity model which has been developed as part of the Topex gravity model improvement effort. Accuracy of the orbit was evaluated using altimeter crossover data. For a continuous 17 day GEOSAT orbit, the global crossover rms is at the 35 cm level, which suggests a radial orbit accuracy also on the order of 35 cm.

  16. Neonates' responses to repeated exposure to a still face.

    PubMed

    Nagy, Emese; Pilling, Karen; Watt, Rachel; Pal, Attila; Orvos, Hajnalka

    2017-01-01

    The main aims of the study were to examine whether human neonates' responses to communication disturbance modelled by the still-face paradigm were stable and whether their responses were affected by their previous experience with the still-face paradigm. The still face procedure, as a laboratory model of interpersonal stress, was administered repeatedly, twice, to 84 neonates (0 to 4 day olds), with a delay of an average of 1.25 day. Frame-by-frame analysis of the frequency and duration of gaze, distressed face, crying, sleeping and sucking behaviours showed that the procedure was stressful to them both times, that is, the still face effect was stable after repeated administration and newborns consistently responded to such nonverbal violation of communication. They averted their gaze, showed distress and cried more during the still-face phase in both the first and the second administration. They also showed a carry-over effect in that they continued to avert their gaze and displayed increased distress and crying in the first reunion period, but their gaze behaviour changed with experience, in the second administration. While in the first administration the babies continued averting their gaze even after the stressful still-face phase was over, this carry-over effect disappeared in the second administration, and the babies significantly increased their gaze following the still-face phase. After excluding explanations of fatigue, habituation and random effects, a self-other regulatory model is discussed as a possible explanation for this pattern.

  17. Androgen receptor CAG and GGC polymorphisms in Mediterraneans: repeat dynamics and population relationships.

    PubMed

    Esteban, Esther; Rodon, Natalia; Via, Marc; Gonzalez-Perez, Emili; Santamaria, Josep; Dugoujon, Jean-Michel; Chennawi, Farha El; Melhaoui, Mohamed; Cherkaoui, Mohamed; Vona, Giuseppe; Harich, Nourdin; Moral, Pedro

    2006-01-01

    Microsatellite variation (CAG and GGC repeats) of the androgen receptor (AR) gene shows remarkable differences among African and non-African populations. In vitro studies have demonstrated an inverse relationship between the length of both microsatellites and AR activity. This fact may explain the observed association of the AR gene with prostate cancer and the strong ethnic differences in the incidence of this cancer. CAG and GGC genetic variation has been tested in a large set of populations from the Ivory Coast as well as 12 Mediterranean samples whose variation is described for the first time. The pattern of frequencies observed in the Ivory Coast agrees with data previously reported for other Sub-Saharan populations. Concerning the Mediterranean variation, Sardinian samples are characterised by low genetic diversities, and Egyptian Siwa Berbers by a particular pattern of GGC frequencies. High and Middle Atlas Moroccan Berbers are the most closely related to the Sub-Saharan variation. For both the CAG and GGC repeats, the Ivory Coast and some Moroccan samples exhibit high frequencies of low size alleles (CAG under 18 repeats, and GGC under 15 repeats) that have been associated with prostate cancer.

  18. Applicaton of radiative transfer theory to microwave transmission medium calibrations

    NASA Technical Reports Server (NTRS)

    Stelzried, C. T.

    1982-01-01

    Precise determinations of the transmission medium loss and noise temperature contribution which are important to the performance characterization of low noise microwave receiving systems and thermal noise standards are discussed. Tropospheric loss is frequently inferred from microwave radiometer noise temperature measurements. Interpretation of these measurements requires an inversion of the radiative transfer integral equation. This is inconvenient even with computer techniques. Solutions of a rapidly convergent power series of the radiative transfer equations are presented. This solution is applicable to a low loss medium with either uniform or nonuniform loss distributions. A four layer atmosphere model is investigated to demonstrate the accuracy of the solution relative to the model. Applications include thermal noise standards and single- and dual-frequency water radiometers.

  19. Oscillatory motion of a viscous fluid in a porous medium

    NASA Astrophysics Data System (ADS)

    Siraev, R. R.

    2015-08-01

    An oscillatory flow of an incompressible fluid in a saturated porous medium in the presence of a solid inclusion has been theoretically studied. Unsteady filtration has been described by the Brinkman-Forchheimer equation, where inertial effects and terms with acceleration characteristic of high filtration rates and the presence of pulsations are taken into account. The convective part of the acceleration is responsible for nonlinear effects near macroinhomogeneities. These effects can play a noticeable role in unsteady flows in the porous medium, as is shown for the problem of a solid ball streamed by an oscillatory flow having a given velocity at infinity. The results indicate that a secondary averaged flow appears in the case of high frequencies and cannot be described by Darcy's or Forchheimer's filtration laws.

  20. Building Fluency through the Repeated Reading Method

    ERIC Educational Resources Information Center

    Cohen, Joshua

    2011-01-01

    For the last two years the author has used Repeated Reading (RR) to teach reading fluency in English as a Foreign Language classrooms in colleges and universities in Japan. RR is a method where the student reads and rereads a text silently or aloud from two to four times to reach a predetermined level of speed, accuracy, and comprehension. RR…

  1. Y Se Repite = And It Repeats Itself

    ERIC Educational Resources Information Center

    Katzew, Adriana

    2010-01-01

    In this article, the author discusses Y Se Repite [And It Repeats Itself], a project she conceptualized due to the growing number of Latino/a Mexican migrant workers in dairy farms in the state of Vermont. In 2006, approximately 2,000 Latinos/as--most of them undocumented Mexican migrant workers--worked throughout the state's dairy farms, yet…

  2. Longer-baseline telescopes using quantum repeaters.

    PubMed

    Gottesman, Daniel; Jennewein, Thomas; Croke, Sarah

    2012-08-17

    We present an approach to building interferometric telescopes using ideas of quantum information. Current optical interferometers have limited baseline lengths, and thus limited resolution, because of noise and loss of signal due to the transmission of photons between the telescopes. The technology of quantum repeaters has the potential to eliminate this limit, allowing in principle interferometers with arbitrarily long baselines.

  3. Photometric Repeatability of Scanned Imagery: UVIS

    NASA Astrophysics Data System (ADS)

    Shanahan, Clare E.; McCullough, Peter; Baggett, Sylvia

    2017-08-01

    We provide the preliminary results of a study on the photometric repeatability of spatial scans of bright, isolated white dwarf stars with the UVIS channel of the Wide Field Camera 3 (WFC3) on the Hubble Space Telescope (HST). We analyze straight-line scans from the first pair of identical orbits of HST program 14878 to assess if sub 0.1% repeatability can be attained with WFC3/UVIS. This study is motivated by the desire to achieve better signal-to-noise in the UVIS contamination and stability monitor, in which observations of standard stars in staring mode have been taken from the installation of WFC3 in 2009 to the present to assess temporal photometric stability. Higher signal to noise in this program would greatly benefit the sensitivity to detect contamination, and to better characterize the observed small throughput drifts over time. We find excellent repeatability between identical visits of program 14878, with sub 0.1% repeatability achieved in most filters. These! results support the initiative to transition the staring mode UVIS contamination and photometric stability monitor from staring mode images to spatial scans.

  4. Triggering of repeating earthquakes in central California

    USGS Publications Warehouse

    Wu, Chunquan; Gomberg, Joan; Ben-Naim, Eli; Johnson, Paul

    2014-01-01

    Dynamic stresses carried by transient seismic waves have been found capable of triggering earthquakes instantly in various tectonic settings. Delayed triggering may be even more common, but the mechanisms are not well understood. Catalogs of repeating earthquakes, earthquakes that recur repeatedly at the same location, provide ideal data sets to test the effects of transient dynamic perturbations on the timing of earthquake occurrence. Here we employ a catalog of 165 families containing ~2500 total repeating earthquakes to test whether dynamic perturbations from local, regional, and teleseismic earthquakes change recurrence intervals. The distance to the earthquake generating the perturbing waves is a proxy for the relative potential contributions of static and dynamic deformations, because static deformations decay more rapidly with distance. Clear changes followed the nearby 2004 Mw6 Parkfield earthquake, so we study only repeaters prior to its origin time. We apply a Monte Carlo approach to compare the observed number of shortened recurrence intervals following dynamic perturbations with the distribution of this number estimated for randomized perturbation times. We examine the comparison for a series of dynamic stress peak amplitude and distance thresholds. The results suggest a weak correlation between dynamic perturbations in excess of ~20 kPa and shortened recurrence intervals, for both nearby and remote perturbations.

  5. Rectourethral fistula after repeat transrectal prostate biopsy.

    PubMed

    Loran, Oleg B; Veliev, Evgeny I; Sokolov, Egor A; Dadashev, Elmar O; Guspanov, Renat I

    2013-09-01

    Transrectal prostate biopsy is considered a relatively safe procedure, with a quite small number of complications. We report a patient with a rectourethral fistula after a repeat transrectal prostate biopsy. To our knowledge, this is the first incident in the published literature.

  6. Y Se Repite = And It Repeats Itself

    ERIC Educational Resources Information Center

    Katzew, Adriana

    2010-01-01

    In this article, the author discusses Y Se Repite [And It Repeats Itself], a project she conceptualized due to the growing number of Latino/a Mexican migrant workers in dairy farms in the state of Vermont. In 2006, approximately 2,000 Latinos/as--most of them undocumented Mexican migrant workers--worked throughout the state's dairy farms, yet…

  7. Repeated Random Sampling in Year 5

    ERIC Educational Resources Information Center

    Watson, Jane M.; English, Lyn D.

    2016-01-01

    As an extension to an activity introducing Year 5 students to the practice of statistics, the software "TinkerPlots" made it possible to collect repeated random samples from a finite population to informally explore students' capacity to begin reasoning with a distribution of sample statistics. This article provides background for the…

  8. Repeater For A Digital-Communication Bus

    NASA Technical Reports Server (NTRS)

    Torres-Guzman, Esteban; Olson, Stephen; Heaps, Tim

    1993-01-01

    Digital repeater circuit designed to extend range of communication on MIL-STD-1553 bus beyond original maximum allowable length of 300 ft. Circuit provides two-way communication, one way at time, and conforms to specifications of MIL-STD-1553. Crosstalk and instability eliminated.

  9. Is Retrieval Mediated after Repeated Testing?

    ERIC Educational Resources Information Center

    Kole, James A.; Healy, Alice F.

    2013-01-01

    In 2 main experiments, the mediated priming effect was used to determine whether retrieval continues to be mediated after repeated testing. In each experiment, participants used the keyword method to learn French vocabulary, then completed a modified lexical decision task in which they first translated a French word, and then made a lexical…

  10. Repeat abortions in New York City, 2010.

    PubMed

    Toprani, Amita; Cadwell, Betsy L; Li, Wenhui; Sackoff, Judith; Greene, Carolyn; Begier, Elizabeth

    2015-06-01

    This study aims to describe factors associated with the number of past abortions obtained by New York City (NYC) abortion patients in 2010. We calculated rates of first and repeat abortion by age, race/ethnicity, and neighborhood-level poverty and the mean number of self-reported past abortions by age, race/ethnicity, neighborhood-level poverty, number of living children, education, payment method, marital status, and nativity. We used negative binomial regression to predict number of past abortions by patient characteristics. Of the 76,614 abortions reported for NYC residents in 2010, 57% were repeat abortions. Repeat abortions comprised >50% of total abortions among the majority of sociodemographic groups we examined. Overall, mean number of past abortions was 1.3. Mean number of past abortions was higher for women aged 30-34 years (1.77), women with ≥5 children (2.50), and black non-Hispanic women (1.52). After multivariable regression, age, race/ethnicity, and number of children were the strongest predictors of number of past abortions. This analysis demonstrates that, although socioeconomic disparities exist, all abortion patients are at high risk for repeat unintended pregnancy and abortion.

  11. [Preventive maintenance of repeated ischemic insults].

    PubMed

    Gavrilenko, A V; Kuklin, A V; Kravchenko, A A; Agafonov, I N

    2008-01-01

    In the review we offer analysis of the effectiveness of carotid endarterectomy in treatment of post-functional apoplexy or stroke patients. Published results of the researches specify possible efficiency of carotid endarterectomy in preventive maintenance against repeated apoplectic attack or strokes. Yet the criteria of usage and execution of the carotid endarterectomy are still to be discussed.

  12. Chlorinated hydrocarbons in women with repeated miscarriages.

    PubMed Central

    Gerhard, I; Daniel, V; Link, S; Monga, B; Runnebaum, B

    1998-01-01

    This study was conducted to investigate a possible etiological role of chlorinated hydrocarbons in the pathogenesis of repeated miscarriages. The blood levels of chlorinated hydrocarbons [CHCs: pentachlorophenol, hexachlorocyclohexane, hexachlorobenzene, the dichlorodiphenyltrichloroethane (DDT) group, polychlorinated biphenyls] were determined in 89 women with repeated miscarriages, who were referred to the University Hospital of Obstetrics and Gynecology of Heidelberg for investigations between 1989 and 1993, and compared to a previously investigated reference population. In more than 20% of the women, at least one of the CHC levels exceeded the reference range. CHC levels did not differ significantly between women with primary or secondary and early or late miscarriages; neither did they differ between women with hormonal or immunological disorders as causes of repeated miscarriages or women with idiopathic repeated miscarriages. No significant associations were detected between CHC levels and further conceptions or the outcome of further pregnancies. As significant associations were found between increasing CHC blood concentrations and immunological and hormonal changes, CHCs may have an impact on the pregnancy course in certain cases. PMID:9755145

  13. Epigenetics and Triplet-Repeat Neurological Diseases

    PubMed Central

    Nageshwaran, Sathiji; Festenstein, Richard

    2015-01-01

    The term “junk DNA” has been reconsidered following the delineation of the functional significance of repetitive DNA regions. Typically associated with centromeres and telomeres, DNA repeats are found in nearly all organisms throughout their genomes. Repetitive regions are frequently heterochromatinized resulting in silencing of intrinsic and nearby genes. However, this is not a uniform rule, with several genes known to require such an environment to permit transcription. Repetitive regions frequently exist as dinucleotide, trinucleotide, and tetranucleotide repeats. The association between repetitive regions and disease was emphasized following the discovery of abnormal trinucleotide repeats underlying spinal and bulbar muscular atrophy (Kennedy’s disease) and fragile X syndrome of mental retardation (FRAXA) in 1991. In this review, we provide a brief overview of epigenetic mechanisms and then focus on several diseases caused by DNA triplet-repeat expansions, which exhibit diverse epigenetic effects. It is clear that the emerging field of epigenetics is already generating novel potential therapeutic avenues for this group of largely incurable diseases. PMID:26733936

  14. A Structured Group Program for Repeat Dieters.

    ERIC Educational Resources Information Center

    McNamara, Kathleen

    1989-01-01

    Describes a structured group program for women who repeatedly diet and may be at risk of developing more serious eating disorders. Discusses sessions focusing on eating behavior as well as internal factors that contribute to low body esteem and food and weight preoccupation. Evaluates effectiveness of program by self-reports of members of two…

  15. Human adaptation to repeated cold immersions.

    PubMed Central

    Golden, F S; Tipton, M J

    1988-01-01

    1. The present investigation was designed to examine human adaptation to intermittent severe cold exposure and to assess the effect of exercise on any adaptation obtained. 2. Sixteen subjects were divided into two equal groups. Each subject performed ten head-out immersions; two into thermoneutral water which was then cooled until they shivered vigorously, and eight into water at 15 degrees C for 40 min. During the majority of the 15 degrees C immersions, one group (dynamic group) exercised whilst the other (static group) rested. 3. Results showed that both groups responded to repeated cold immersions with a reduction in their initial responses to cold. The time course of these reductions varied, however, between responses. 4. Only the static group developed a reduced metabolic response to prolonged resting immersion. 5. It is concluded that repeated resting exposure to cold was the more effective way of producing an adaptation. The performance of exercise during repeated exposure to cold prevented the development of an adaptive reduction in the metabolic response to cold during a subsequent resting immersion. In addition, many of the adaptations obtained during repeated resting exposure were overridden or masked during a subsequent exercising immersion. PMID:3411500

  16. Testing Multiple Outcomes in Repeated Measures Designs

    ERIC Educational Resources Information Center

    Lix, Lisa M.; Sajobi, Tolulope

    2010-01-01

    This study investigates procedures for controlling the familywise error rate (FWR) when testing hypotheses about multiple, correlated outcome variables in repeated measures (RM) designs. A content analysis of RM research articles published in 4 psychology journals revealed that 3 quarters of studies tested hypotheses about 2 or more outcome…

  17. A Repeated Measures Design for Treatment Evaluation.

    ERIC Educational Resources Information Center

    Hser, Y.; And Others

    A repeated measures design was used to assess the effects of a methadone maintenance program in several California locations. Subjects were 720 Chicano and Anglo men and women participating in rehabilitation programs for heroin addicts. The subjects were interviewed between 1978-1981, and the average follow-up time after initial treatment was 4-6…

  18. Episodes of repeated sudden deafness following pregnancies.

    PubMed

    Pawlak-Osinska, Katarzyna; Burduk, Pawel K; Kopczynski, Andrzej

    2009-04-01

    Sex hormones influence and provoke changes in hearing levels. Sudden deafness is rarely observed in pregnant women. The effective treatment of sudden deafness in pregnant women is a challenging problem. We present a case of repeatable, completely regressed sudden deafness in a woman during her first and second pregnancies.

  19. Is Retrieval Mediated after Repeated Testing?

    ERIC Educational Resources Information Center

    Kole, James A.; Healy, Alice F.

    2013-01-01

    In 2 main experiments, the mediated priming effect was used to determine whether retrieval continues to be mediated after repeated testing. In each experiment, participants used the keyword method to learn French vocabulary, then completed a modified lexical decision task in which they first translated a French word, and then made a lexical…

  20. Testing Multiple Outcomes in Repeated Measures Designs

    ERIC Educational Resources Information Center

    Lix, Lisa M.; Sajobi, Tolulope

    2010-01-01

    This study investigates procedures for controlling the familywise error rate (FWR) when testing hypotheses about multiple, correlated outcome variables in repeated measures (RM) designs. A content analysis of RM research articles published in 4 psychology journals revealed that 3 quarters of studies tested hypotheses about 2 or more outcome…