Micrometeorological flux measurements at a coastal site

NASA Astrophysics Data System (ADS)

Song, Guozheng; Meixner, Franz X.; Bruse, Michael; Mamtimin, Buhalqem

2014-05-01

The eddy covariance (EC) technique is the only direct measurement of the momentum, heat, and trace gas (e.g. water vapor, CO2 and ozone) fluxes. The measurements are expected to be most accurate over flat terrain where there is an extended homogenous surface upwind from the tower, and when the environmental conditions are steady. Additionally, the one dimensional approach assumes that vertical turbulent exchange is the dominant flux, whereas advective influences should be negligible. The application of EC method under non-ideal conditions, for example in complex terrain, has yet to be fully explored. To explore the possibilities and limitations of EC technique under non-ideal conditions, an EC system was set up at Selles beach, Crete, Greece (35.33°N, 25.71°E) in the beginning of July 2012. The dominant wind direction was west, parallel to the coast. The EC system consisted of a sonic anemometer (CSAT3 Campbell Scientific), an infrared open-path CO2/H2O gas analyzer (LI-7500, Li-COR Biosciences) and a fast chemiluminescence ozone analyzer (enviscope GmbH). All the signals of these fast response instruments were sampled at 10 Hz and the measurement height was 3 m. Besides, another gradient system was setup. Air temperature, relative humidity (HYGROMER MP 103 A), and wind speed (WMT700 Vaisala) were measured every 10 seconds at 3 heights (0.7, 1.45, 3 m). Air intakes were set up at 0.7m and 3m. A pump drew the air through a flow system and a telflon valve alternately switched between the two heights every 30 seconds. H2O, CO2 (LI-840A, Li-COR Biosciences) and ozone mixing ratio s (model 205, 2BTechnologies) were measured every 10 seconds. Momentum, heat, CO2 and ozone fluxes were evaluated by both EC and gradient technique. For the calculation of turbulent fluxes, TK3 algorithm (Department of Micrometeorology, University Bayreuth, Germany) was applied. We will present the measured fluxes of the two systems and assess the data quality under such non-ideal condition.

Micrometeorological measurements at Ash Meadows and Corn Creek Springs, Nye and Clark counties, Nevada, 1986-87

USGS Publications Warehouse

Johnson, M.J.; Pupacko, Alex

1992-01-01

Micrometeorological data were collected at Ash Meadows and Corn Creek Springs, Nye and Clark Counties, Nevada, from October 1, 1986 through September 30, 1987. The data include accumulated measurements recorded hourly or every 30 minutes, at each site, for the following climatic variables: air temperature, wind speed, relative humidity, precipitation, solar radiation, net radiation, and soil-heat flux. Periodic sampling of sensible-heat flux and latent-heat flux were also recorded using 5-minute intervals of accumulated data. Evapotranspiration was calculated by both the eddy-correlation method and the Penman combination method. The data collected and the computer programs used to process the data are available separately on three magnetic diskettes in card-image format. (USGS)

Selected micrometeorological, soil-moisture, and evapotranspiration data at Amargosa Desert Research Site in Nye County near Beatty, Nevada, 2001-05

USGS Publications Warehouse

Johnson, Michael J.; Mayers, C. Justin; Garcia, C. Amanda; Andraski, Brian J.

2007-01-01

Selected micrometeorological and soil-moisture data were collected at the Amargosa Desert Research Site adjacent to a low-level radio-active waste and hazardous chemical waste facility near Beatty, Nevada, 2001-05. Evapotranspiration data were collected from February 2002 through the end of December 2005. Data were col-lected in support of ongoing research to improve the understanding of hydrologic and contaminant-transport processes in arid environments. Micrometeorological data include solar radiation, net radiation, air temperature, relative humidity, saturated and ambient vapor pressure, wind speed and direction, barometric pressure, precipitation, near-surface soil temperature, soil-heat flux and soil-water content. All micrometeorological data were collected using a 10-second sampling interval by data loggers that output daily and hourly mean values. Daily maximum and minimum values are based on hourly mean values. Precipitation data output includes daily and hourly totals. Selected soil-moisture profiles at depth include periodic measurements of soil volumetric water-content measurements at nine neutron-probe access tubes to depths ranging from 5.25 to 29.25 meters. Evapotranspiration data include measurement of daily evapotranspiration and 15-minute fluxes of the four principal energy budget components of latent-heat flux, sensible-heat flux, soil-heat flux, and net radiation. Other data collected and used in equations to determine evapotranspiration include temperature and water content of soil, temperature and vapor pressure of air, and covariance values. Evapotranspiration and flux estimates during 15-minute intervals were calculated at a 0.1-second execution interval using the eddy covariance method. Data files included in this report contain the complete micrometeorological, soil-moisture, and evapotranspiration field data sets. These data files are presented in tabular Excel spreadsheet format. This report highlights selected data contained in the computer generated data files using figures, tables, and brief discussions. Instrumentation used for data collection also is described. Water-content profiles are shown to demonstrate variability of water content with depth. Time-series data are plotted to illustrate temporal variations in micrometeorological, soil-water content, and evapotranspiration data.

Contrasting Methods for Measuring Evapotranspiration in Soybean

USDA-ARS?s Scientific Manuscript database

Crop scientists are often interested in canopy rather than leaf water fluxes. Canopy measurements are difficult to obtain because instrumentation is expensive, investigations require a high level of comprehension in micrometeorological methods, and treatment comparisons are usually limited. The obje...

Effect of canopy structure and open-top chamber techniques on micrometeorological parameters and the gradients and transport of water vapor, carbon dioxide and ozone in the canopies of plum trees (`prunus salicina`) in the San Joaquin valley. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Grantz, D.A.; Vaughn, D.L.; Metheny, P.A.

1995-03-15

Plum trees (Prunus salicina cv. Casselman) were exposed to ozone in open-top chambers (OTC) or chamberless plots, and trace gas concentrations and microenvironmental conditions were monitored within tree canopies inside the outside the OTC. Concentrations of ozone, carbon dioxide and water vapor, leaf and air temperature, light intensity, and wind speed were measured at nine positions in the tree canopies. The objectives were to: (1) map the distribution of microenvironmental parameters within the canopies inside and outside the OTC; (2) determine transport parameters for gas exchange, and (3) calculate ozone flux. Significant vertical and horizontal gradients were observed; gradients weremore » diminished and often inverted inside relative to outside the OTC due to air distribution at the bottom of the OCT. Ozone flux was readily modeled from measures of stomatal conductance, nonstomatal conductance and ozone concentration at the leaf surface.« less

Selected micrometeorological and soil-moisture data at Amargosa Desert Research Site, an arid site near Beatty, Nye County, Nevada, 1998-2000

USGS Publications Warehouse

Johnson, Michael J.; Mayers, Charles J.; Andraski, Brian J.

2002-01-01

Selected micrometeorological and soil-moisture data were collected at the Amargosa Desert Research Site adjacent to a low-level radioactive waste and hazardous chemical waste facility near Beatty, Nev., 1998-2000. Data were collected in support of ongoing research studies to improve the understanding of hydrologic and contaminant-transport processes in arid environments. Micrometeorological data include precipitation, air temperature, solar radiation, net radiation, relative humidity, ambient vapor pressure, wind speed and direction, barometric pressure, soil temperature, and soil-heat flux. All micrometeorological data were collected using a 10-second sampling interval by data loggers that output daily mean, maximum, and minimum values, and hourly mean values. For precipitation, data output consisted of daily, hourly, and 5-minute totals. Soil-moisture data included periodic measurements of soil-water content at nine neutron-probe access tubes with measurable depths ranging from 5.25 to 29.75 meters. The computer data files included in this report contain the complete micrometeorological and soil-moisture data sets. The computer data consists of seven files with about 14 megabytes of information. The seven files are in tabular format: (1) one file lists daily mean, maximum, and minimum micrometeorological data and daily total precipitation; (2) three files list hourly mean micrometeorological data and hourly precipitation for each year (1998-2000); (3) one file lists 5-minute precipitation data; (4) one file lists mean soil-water content by date and depth at four experimental sites; and (5) one file lists soil-water content by date and depth for each neutron-probe access tube. This report highlights selected data contained in the computer data files using figures, tables, and brief discussions. Instrumentation used for data collection also is described. Water-content profiles are shown to demonstrate variability of water content with depth. Time-series data are plotted to illustrate temporal variations in micrometeorological and soil-water content data. Substantial precipitation at the end of an El Ni?o cycle in early 1998 resulted in measurable water penetration to a depth of 1.25 meters at one of the four experimental soil-monitoring sites.

Comparing CO2 flux data from eddy covariance methods with bowen ratio energy balance methods from contrasting soil management

USDA-ARS?s Scientific Manuscript database

Measuring CO2 fluxes from contrasting soil management practices is important for understanding the role of agriculture in source-sink relationship with CO2 flux. There are several micrometeorological methods for measuring CO2 emissions, however all are expensive and thus do not easily lend themselve...

Measuring forest evapotranspiration--theory and problems

Treesearch

Anthony C. Federer; Anthony C. Federer

1970-01-01

A satisfactory general method of measuring forest evapotranspiration has yet to be developed. Many procedures have been tried, but only the soil-water budget method and the micrometeorological methods offer any degree of success. This paper is a discussion of these procedures and the problems that arise in applying them. It is designed as a reference for scientists and...

Combining two complementary micrometeorological methods to measure CH4 and N2O fluxes over pasture

NASA Astrophysics Data System (ADS)

Laubach, J.; Barthel, M.; Fraser, A.; Hunt, J. E.; Griffith, D. W. T.

2015-09-01

New Zealand's largest industrial sector is pastoral agriculture, giving rise to a large fraction of the country's emissions of methane (CH4) and nitrous oxide (N2O). We designed a system to continuously measure CH4 and N2O fluxes at the field scale on two adjacent pastures that differed with respect to management. At the core of this system was a closed-cell Fourier-transform infrared spectrometer (FTIR), measuring the mole fractions of CH4, N2O and carbon dioxide (CO2) at two heights at each site. In parallel, CO2 fluxes were measured using eddy-covariance instrumentation. We applied two different micrometeorological ratio methods to infer the CH4 and N2O fluxes from their respective mole fractions and the CO2 fluxes. The first is a variant of the flux-gradient method, where it is assumed that the turbulent diffusivities of CH4 and N2O equal that of CO2. This method was reliable when the CO2 mole-fraction difference between heights was at least 4 times greater than the FTIR's resolution of differences. For the second method, the temporal increases of mole fractions in the stable nocturnal boundary layer, which are correlated for concurrently-emitted gases, are used to infer the unknown fluxes of CH4 and N2O from the known flux of CO2. This method was sensitive to "contamination" from trace gas sources other than the pasture of interest and therefore required careful filtering. With both methods combined, estimates of mean daily CH4 and N2O fluxes were obtained for 60 % of days at one site and 77 % at the other. Both methods indicated both sites as net sources of CH4 and N2O. Mean emission rates for one year at the unfertilised, winter-grazed site were 8.2 (± 0.91) nmol CH4 m-2 s-1 and 0.40 (± 0.018) nmol N2O m-2 s-1. During the same year, mean emission rates at the irrigated, fertilised and rotationally-grazed site were 7.0 (± 0.89) nmol CH4 m-2 s-1 and 0.57 (± 0.019) nmol N2O m-2 s-1. At this site, the N2O emissions amounted to 1.19 (± 0.15) % of the nitrogen inputs from animal excreta and fertiliser application.

Combining two complementary micrometeorological methods to measure CH4 and N2O fluxes over pasture

NASA Astrophysics Data System (ADS)

Laubach, Johannes; Barthel, Matti; Fraser, Anitra; Hunt, John E.; Griffith, David W. T.

2016-03-01

New Zealand's largest industrial sector is pastoral agriculture, giving rise to a large fraction of the country's emissions of methane (CH4) and nitrous oxide (N2O). We designed a system to continuously measure CH4 and N2O fluxes at the field scale on two adjacent pastures that differed with respect to management. At the core of this system was a closed-cell Fourier transform infrared (FTIR) spectrometer, which measured the mole fractions of CH4, N2O and carbon dioxide (CO2) at two heights at each site. In parallel, CO2 fluxes were measured using eddy-covariance instrumentation. We applied two different micrometeorological ratio methods to infer the CH4 and N2O fluxes from their respective mole fractions and the CO2 fluxes. The first is a variant of the flux-gradient method, where it is assumed that the turbulent diffusivities of CH4 and N2O equal that of CO2. This method was reliable when the CO2 mole-fraction difference between heights was at least 4 times greater than the FTIR's resolution of differences. For the second method, the temporal increases of mole fractions in the stable nocturnal boundary layer, which are correlated for concurrently emitted gases, are used to infer the unknown fluxes of CH4 and N2O from the known flux of CO2. This method was sensitive to "contamination" from trace gas sources other than the pasture of interest and therefore required careful filtering. With both methods combined, estimates of mean daily CH4 and N2O fluxes were obtained for 56 % of days at one site and 73 % at the other. Both methods indicated both sites as net sources of CH4 and N2O. Mean emission rates for 1 year at the unfertilised, winter-grazed site were 8.9 (±0.79) nmol CH4 m-2 s-1 and 0.38 (±0.018) nmol N2O m-2 s-1. During the same year, mean emission rates at the irrigated, fertilised and rotationally grazed site were 8.9 (±0.79) nmol CH4 m-2 s-1 and 0.58 (±0.020) nmol N2O m-2 s-1. At this site, the N2O emissions amounted to 1.21 (±0.15) % of the nitrogen inputs from animal excreta and fertiliser application.

Evapotranspiration from areas of native vegetation in west-central Florida

USGS Publications Warehouse

Bidlake, W.R.; Woodham, W.M.; Lopez, M.A.

1993-01-01

A study was made to examine the suitability of three different micrometeorological methods for estimating evapotranspiration from selected areas of native vegetation in west-central Florida and to estimate annual evapotranspiration from those areas. Evapotranspiration was estimated using the energy- balance Bowen ratio and eddy correlation methods. Potential evapotranspiration was computed using the Penman equation. The energy-balance Bowen ratio method was used to estimate diurnal evapotrans- piration at unforested sites and yielded reasonable results; however, measurements indicated that the magnitudes of air temperature and vapor-pressure gradients above the forested sites were too small to obtain reliable evapotranspiration measurements with the energy balance Bowen ratio system. Analysis of the surface energy-balance indicated that sensible and latent heat fluxes computed using standard eddy correlation computation methods did not adequately account for available energy. Eddy correlation data were combined with the equation for the surface energy balance to yield two additional estimates of evapotranspiration. Daily potential evapotranspiration and evapotranspira- tion estimated using the energy-balance Bowen ratio method were not correlated at a unforested, dry prairie site, but they were correlated at a marsh site. Estimates of annual evapotranspiration for sites within the four vegetation types, which were based on energy-balance Bowen ratio and eddy correlation measurements, were 1,010 millimeters for dry prairie sites, 990 millimeters for marsh sites, 1,060 millimeters for pine flatwood sites, and 970 millimeters for a cypress swamp site.

Effect of the position of the visible sky in determining the sky view factor on micrometeorological and human thermal comfort conditions in urban street canyons

NASA Astrophysics Data System (ADS)

Qaid, Adeb; Lamit, Hasanuddin Bin; Ossen, Dilshan Remaz; Rasidi, Mohd Hisyam

2018-02-01

Poor daytime and night-time micrometeorological conditions are issues that influence the quality of environmental conditions and can undermine a comfortable human lifestyle. The sky view factor (SVF) is one of the essential physical parameters used to assess the micrometeorological conditions and thermal comfort levels within city streets. The position of the visible sky relative to the path of the sun, in the cardinal and ordinal directions, has not been widely discerned as a parameter that could have an impact on the micrometeorological conditions of urban streets. To investigate this parameter, different urban streets that have a similar SVF value but diverse positions of visible sky were proposed in different street directions intersecting with the path of the sun, namely N-S, NE-SW and NW-SE. The effects of daytime and night-time micrometeorological variables and human thermal comfort variables on the street were investigated by applying ENVI-met V3.1 Beta software. The results show that the position of the visible sky has a greater influence on the street's meteorological and human thermal comfort conditions than the SVF value. It has the ability to maximise or minimise the mean radiation temperature (Tmrt, °C) and the physiological equivalent temperature (PET, °C) at street level. However, the visible sky positioned to the zenith in a NE-SW or N-S street direction and to the SW of a NW-SE street direction achieves the best daytime micrometeorological and thermal comfort conditions. Alternatively, the visible sky positioned to the NE for a NW-SE street direction, to the NW and the zenith for a NE-SW street direction and to the zenith for a N-S street direction reduces the night-time air temperature (Ta, °C). Therefore, SVF and the position of the visible sky relative to the sun's trajectory, in the cardinal and ordinal directions, must be considered during urban street planning to better understand the resultant micrometeorological and human thermal comfort conditions.

Pasture-scale methane emissions of grazing cattle

USDA-ARS?s Scientific Manuscript database

Grazing cattle are mobile point sources of methane and present challenges to quantify emissions using noninterfering micrometeorological methods. Stocking density is low and cattle can bunch up or disperse over a wide area, so knowing cattle locations is critical. The methane concentration downwind ...

Accuracy of lagoon gas emissions using an inverse dispersion method

USDA-ARS?s Scientific Manuscript database

Measuring gas emissions from treatment lagoons and storage ponds poses challenging conditions for existing micrometeorological techniques because of non-ideal wind conditions. These include those induced by trees and crops surrounding the lagoons, and lagoons with dimensions too small to establish ...

A turnkey data logger program for field-scale energy flux density measurements using eddy covariance and surface renewal

USDA-ARS?s Scientific Manuscript database

Micrometeorological methods and ecosystem-scale energy and mass flux density measurements have become increasingly important in soil, agricultural, and environmental sciences. For many scientists without formal training in atmospheric science, these techniques are relatively inaccessible. Eddy cov...

Summary of the Blackmo 88 spray experiment

Treesearch

D. R. Miller; W. E. Yendol; M. L. McManus; D. E. Anderson; K. Mierzejewski

1991-01-01

The Blackmo 88 spray trial experiment was conducted for two primary purposes: To quantify the effects of local micrometeorological processes, in and near the canopy, on the deposition patterns of aerially applied BT in a mature oak forest; To generate a data set containing simultaneous measurements of spray deposition and detailed micrometeorology, in a canopy of known...

Eddy Covariance Method: Overview of General Guidelines and Conventional Workflow

NASA Astrophysics Data System (ADS)

Burba, G. G.; Anderson, D. J.; Amen, J. L.

2007-12-01

Atmospheric flux measurements are widely used to estimate water, heat, carbon dioxide and trace gas exchange between the ecosystem and the atmosphere. The Eddy Covariance method is one of the most direct, defensible ways to measure and calculate turbulent fluxes within the atmospheric boundary layer. However, the method is mathematically complex, and requires significant care to set up and process data. These reasons may be why the method is currently used predominantly by micrometeorologists. Modern instruments and software can potentially expand the use of this method beyond micrometeorology and prove valuable for plant physiology, hydrology, biology, ecology, entomology, and other non-micrometeorological areas of research. The main challenge of the method for a non-expert is the complexity of system design, implementation, and processing of the large volume of data. In the past several years, efforts of the flux networks (e.g., FluxNet, Ameriflux, CarboEurope, Fluxnet-Canada, Asiaflux, etc.) have led to noticeable progress in unification of the terminology and general standardization of processing steps. The methodology itself, however, is difficult to unify, because various experimental sites and different purposes of studies dictate different treatments, and site-, measurement- and purpose-specific approaches. Here we present an overview of theory and typical workflow of the Eddy Covariance method in a format specifically designed to (i) familiarize a non-expert with general principles, requirements, applications, and processing steps of the conventional Eddy Covariance technique, (ii) to assist in further understanding the method through more advanced references such as textbooks, network guidelines and journal papers, (iii) to help technicians, students and new researchers in the field deployment of the Eddy Covariance method, and (iv) to assist in its use beyond micrometeorology. The overview is based, to a large degree, on the frequently asked questions received from new users of the Eddy Covariance method and relevant instrumentation, and employs non-technical language to be of practical use to those new to this field. Information is provided on theory of the method (including state of methodology, basic derivations, practical formulations, major assumptions and sources of errors, error treatment, and use in non- traditional terrains), practical workflow (e.g., experimental design, implementation, data processing, and quality control), alternative methods and applications, and the most frequently overlooked details of the measurements. References and access to an extended 141-page Eddy Covariance Guideline in three electronic formats are also provided.

Gap-filling methods to impute eddy covariance flux data by preserving variance.

NASA Astrophysics Data System (ADS)

Kunwor, S.; Staudhammer, C. L.; Starr, G.; Loescher, H. W.

2015-12-01

To represent carbon dynamics, in terms of exchange of CO2 between the terrestrial ecosystem and the atmosphere, eddy covariance (EC) data has been collected using eddy flux towers from various sites across globe for more than two decades. However, measurements from EC data are missing for various reasons: precipitation, routine maintenance, or lack of vertical turbulence. In order to have estimates of net ecosystem exchange of carbon dioxide (NEE) with high precision and accuracy, robust gap-filling methods to impute missing data are required. While the methods used so far have provided robust estimates of the mean value of NEE, little attention has been paid to preserving the variance structures embodied by the flux data. Preserving the variance of these data will provide unbiased and precise estimates of NEE over time, which mimic natural fluctuations. We used a non-linear regression approach with moving windows of different lengths (15, 30, and 60-days) to estimate non-linear regression parameters for one year of flux data from a long-leaf pine site at the Joseph Jones Ecological Research Center. We used as our base the Michaelis-Menten and Van't Hoff functions. We assessed the potential physiological drivers of these parameters with linear models using micrometeorological predictors. We then used a parameter prediction approach to refine the non-linear gap-filling equations based on micrometeorological conditions. This provides us an opportunity to incorporate additional variables, such as vapor pressure deficit (VPD) and volumetric water content (VWC) into the equations. Our preliminary results indicate that improvements in gap-filling can be gained with a 30-day moving window with additional micrometeorological predictors (as indicated by lower root mean square error (RMSE) of the predicted values of NEE). Our next steps are to use these parameter predictions from moving windows to gap-fill the data with and without incorporation of potential driver variables of the parameters traditionally used. Then, comparisons of the predicted values from these methods and 'traditional' gap-filling methods (using 12 fixed monthly windows) will be assessed to show the scale of preserving variance. Further, this method will be applied to impute artificially created gaps for analyzing if variance is preserved.

Report and Analysis of the May 1979 Marine Surface Layer Micrometeorological Experiment at San Nicolas Island, California.

DTIC Science & Technology

1981-12-31

November of 1976 by the National Oceano - graphic and Atmospheric Administration (NOAA). The -arameter Typical Measurement Accurac maximum and minimum tide... sols using Thin Plastic Scintillators," Nucl. Layer," Boundary-Layer Meteorol., 18, 107-127. Instrum. Methods 108, 467-470. Kidwell, KB., & W.R. Seguin

Evaluation of statistical protocols for quality control of ecosystem carbon dioxide fluxes

Treesearch

Jorge F. Perez-Quezada; Nicanor Z. Saliendra; William E. Emmerich; Emilio A. Laca

2007-01-01

The process of quality control of micrometeorological and carbon dioxide (CO2) flux data can be subjective and may lack repeatability, which would undermine the results of many studies. Multivariate statistical methods and time series analysis were used together and independently to detect and replace outliers in CO2 flux...

Leaf water 18 O and 2 H enrichment along vertical canopy profiles in a broadleaved and a conifer forest tree.

PubMed

Bögelein, Rebekka; Thomas, Frank M; Kahmen, Ansgar

2017-07-01

Distinguishing meteorological and plant-mediated drivers of leaf water isotopic enrichment is prerequisite for ecological interpretations of stable hydrogen and oxygen isotopes in plant tissue. We measured input and leaf water δ 2 H and δ 18 O as well as micrometeorological and leaf morpho-physiological variables along a vertical gradient in a mature angiosperm (European beech) and gymnosperm (Douglas fir) tree. We used these variables and different enrichment models to quantify the influence of Péclet and non-steady state effects and of the biophysical drivers on leaf water enrichment. The two-pool model accurately described the diurnal variation of leaf water enrichment. The estimated unenriched water fraction was linked to leaf dry matter content across the canopy heights. Non-steady state effects and reduced stomatal conductance caused a higher enrichment of Douglas fir compared to beech leaf water. A dynamic effect analyses revealed that the light-induced vertical gradients of stomatal conductance and leaf temperature outbalanced each other in their effects on evaporative enrichment. We conclude that neither vertical canopy gradients nor the Péclet effect is important for estimates and interpretation of isotopic leaf water enrichment in hypostomatous trees. Contrarily, species-specific non-steady state effects and leaf temperatures as well as the water vapour isotope composition need careful consideration. © 2017 John Wiley & Sons Ltd.

Evapotranspiration from areas of native vegetation in west-central Florida

USGS Publications Warehouse

Bidlake, W.R.; Woodham, W.M.; Lopez, Miguel Angel

1996-01-01

The micrometeorological methods of energy-balance Bowen ratio and eddy correlation probably are suitable for determining evapotranspiration from unforested sites, but the aerodynamic effects of tall tree canopies need to be considered when the methods are used for forested sites. Potential evapotranspiration methods might not yield reliable estimates of evapotranspiration for all areas of native vegetation. Estimates of annual evapotranspiration ranged from 970 millimeters for a cypress swamp site to 1,060 millimeters for a pine flatwood site.

Micrometeorological, evapotranspiration, and soil-moisture data at the Amargosa Desert Research site in Nye County near Beatty, Nevada, 2006-11

USGS Publications Warehouse

Arthur, Jonathan M.; Johnson, Michael J.; Mayers, C. Justin; Andraski, Brian J.

2012-11-13

This report describes micrometeorological, evapotranspiration, and soil-moisture data collected since 2006 at the Amargosa Desert Research Site adjacent to a low-level radio-active waste and hazardous chemical waste facility near Beatty, Nevada. Micrometeorological data include precipitation, solar radiation, net radiation, air temperature, relative humidity, saturated and ambient vapor pressure, wind speed and direction, barometric pressure, near-surface soil temperature, soil-heat flux, and soil-water content. Evapotranspiration (ET) data include latent-heat flux, sensible-heat flux, net radiation, soil-heat flux, soil temperature, air temperature, vapor pressure, and other principal energy-budget data. Soil-moisture data include periodic measurements of volumetric water-content at experimental sites that represent vegetated native soil, devegetated native soil, and simulated waste disposal trenches - maximum measurement depths range from 5.25 to 29.25 meters. All data are compiled in electronic spreadsheets that are included with this report.

The role of plant physiology in hydrology: looking backwards and forwards

NASA Astrophysics Data System (ADS)

Roberts, J.

2007-01-01

The implementation of plant physiological studies at the Institute of Hydrology focussed both on examining and understanding the physiological controls of transpiration as well as evaluating the value of using physiological methods to measure transpiration. Transpiration measurement by physiological methods would be particularly valuable where this could not be achieved by micrometeorological and soil physics methods. The principal physiological measurements used were determinations of leaf stomatal conductance and leaf water relations to monitor plant water stress. In this paper the value of these approaches is illustrated by describing a few case studies in which plant physiological insight, provided both as new measurements and existing knowledge, would aid in the interpretation of the hydrological behaviour of important vegetation. Woody vegetation figured largely in these studies, conducted in the UK and overseas. Each of these case studies is formulated as a quest to answer a particular question. A collaborative comparison of conifer forest transpiration in Thetford forest using micrometeorological and soil physics techniques exhibited a substantially larger (~1 mm day-1) estimate from the micrometeorological approach. So the question - Why is there a disagreement in the estimates of forest transpiration made using micrometeorological and soil physics approaches? A range of physiological studies followed that suggested that there was no one simple answer but that the larger estimate from the micrometeorology technique might include contributions of water taken up by deep roots, from shallow-rooted vegetation and possibly also from water previously stored in trees. These sources of water were probably not included in the soil physics estimate of transpiration. The annual transpiration from woodlands in NW Europe shows a low magnitude and notable similarity between different sites raising the question - Why is transpiration from European forests low and conservative? An important contribution both to the similar and low transpiration is the likely reduction of stomatal conductance of the foliage associated with increasing air humidity deficit. A greater response is usually found when initial conductances are highest. Also contributing to similarities in transpiration from forest stands would be a compensatory role of understories and that deficits in soil moisture may not come into play until severe soil water deficits occur. Physiological studies have been conducted in many locations overseas. The modest transpiration of tropical rainforest is intriguing - Why is tropical rainforest transpiration so low? In common with temperate trees the reduction of stomatal conductance of tropical trees in association with increasing air humidity deficit will limit transpiration. In addition the high leaf area index of tropical rainforest creates conditions in the lower canopy layers that mean transpiration from those layers is much reduced from what might be possible. As well as being used to quantify and understand transpiration, physiological techniques might be used to assess when plants require water. What is the first signal that plants need water? Studies on sugar cane in Mauritius indicated that leaf growth was the most sensitive measure. A look forward to the future suggests that there will be a continued need for physiological measurements particularly where other techniques more suited to extensive vegetation are not appropriate. There are many unresolved issues about water use from fragmented, heterogeneous vegetation and physiological approaches are best suited to these. The measurement of sap flow in individual stems will be an important methodology in the future but there are still methodological issues to resolve.

Evaluating Micrometeorological Estimates of Groundwater Discharge from Great Basin Desert Playas

NASA Astrophysics Data System (ADS)

Jackson, T.; Halford, K. J.; Gardner, P.

2017-12-01

Groundwater availability studies in the arid southwestern United States traditionally have assumed that groundwater discharge by evapotranspiration (ETg) from desert playas is a significant component of the groundwater budget. This result occurs because desert playa ETg rates are poorly constrained by Bowen Ratio energy budget (BREB) and eddy-covariance (EC) micrometeorological measurement approaches. Best attempts by previous studies to constrain ETg from desert playas have resulted in ETg rates that are below the detection limit of micrometeorological approaches. This study uses numerical models to further constrain desert playa ETg rates that are below the detection limit of EC (0.1 mm/d) and BREB (0.3 mm/d) approaches, and to evaluate the effect of hydraulic properties and salinity-based groundwater-density contrasts on desert playa ETg rates. Numerical models simulated ETg rates from desert playas in Death Valley, California and Dixie Valley, Nevada. Results indicate that actual ETg rates from desert playas are significantly below the upper detection limits provided by the BREB- and EC-based micrometeorological measurements. Discharge from desert playas contribute less than 2 percent of total groundwater discharge from Dixie and Death Valleys, which suggests discharge from desert playas is negligible in other basins. Numerical simulation results also show that ETg from desert playas primarily is limited by differences in hydraulic properties between alluvial fan and playa sediments and, to a lesser extent, by salinity-based groundwater density contrasts.

Biogenic emissions of volatile organic compounds from gorse (Ulex europaeus): Diurnal emission fluxes at Kelling Heath, England

NASA Astrophysics Data System (ADS)

Cao, X.-L.; Boissard, C.; Juan, A. J.; Hewitt, C. N.; Gallagher, M.

1997-08-01

Volatile organic compound (VOC) emission fluxes from Gorse (Ulex europaeus) were measured during May 30-31, 1995 at Kelling Heath in eastern England by using bag enclosure and gradient methods simultaneously. The enclosure measurements were made from branches at different stages of physiological development (flowering, after flowering, and mixed). Isoprene was found to represent 90% of the total VOC emissions, and its emission rates fluctuated from 6 ng (g dwt)-1 h-1 in the early morning to about 9700 ng(g dwt)-1 h-1 at midday. Averaged emission rates standardized to 20°C were 1625, 2120, and 3700 ng (g dwt)-1 h-1 for the new grown, "mixed," and flowering branch, respectively. Trans-ocimene and α-pinene were the main monoterpenes emitted and represented, on average, 47.6% and 36.9% of the total monoterpenes. Other monoterpenes, camphene, sabinene, β-pinene, myrcene, limonene and γ-terpinene, were positively identified but together represented less than 1.5% of the total VOC emissions from gorse. Maximum isoprene concentrations in air at the site were measured around midday at 2 m (174 parts per trillion by volume, or pptv) and 6 m (149 pptv), and minimum concentrations were measured during the night (8 pptv at both heights). Mean daytime α-pinene air concentrations of 141 and 60 pptv at 2 and 6 m height were determined, but trans-ocimene concentrations were less than the analytical detection limit (4 pptv), suggesting rapid chemical removal of this compound from air. The isoprene fluxes calculated by the micrometeorological gradient method showed a pattern similar to that of those calculated by the enclosure method, with isoprene emission rates maximum at midday (100 μg m-2 h-1) and not detectable during the nighttime. Assessment of the fraction of the site covered by gorse plants enabled an extrapolation of emission fluxes from the enclosure measurements. When averaged over the 2 day experiment, isoprene fluxes of 29.8 and 27.8 μg m-2 h-1 were obtained from the gradient and the enclosure extrapolation respectively. These isoprene fluxes to the atmosphere represented between 0.12% and 0.35% of the net assimilated carbon (as CO2) uptake rate for gorse.

Continuous measurements of methane flux in two Japanese temperate forests based on the micrometeorological and chamber methods

NASA Astrophysics Data System (ADS)

Yoshikawa, K.; Ueyama, M.; Takagi, K.; Kominami, Y.

2015-12-01

Methane (CH4) budget in forest ecosystems have not been accurately quantified due to limited measurements and considerable spatiotemporal heterogeneity. In order to quantify CH4 fluxes at temperate forest at various spatiotemporal scales, we have continuously measured CH4 fluxes at two upland forests based on the micrometeorological hyperbolic relaxed eddy accumulation (HREA) and automated dynamic closed chamber methods.The measurements have been conducted at Teshio experimental forest (TSE) since September 2013 and Yamashiro forest meteorology research site (YMS) since November 2014. Three automated chambers were installed on each site. Our system can measure CH4 flux by the micrometeorological HREA, vertical concentration profile at four heights, and chamber measurements by a laser-based gas analyzer (FGGA-24r-EP, Los Gatos Research Inc., USA).Seasonal variations of canopy-scale CH4 fluxes were different in each site. CH4 was consumed during the summer, but was emitted during the fall and winter in TSE; consequently, the site acted as a net annual CH4 source. CH4 was steadily consumed during the winter, but CH4 fluxes fluctuated between absorption and emission during the spring and summer in YMS. YMS acted as a net annual CH4 sink. CH4 uptake at the canopy scale generally decreased with rising soil temperature and increased with drying condition for both sites. CH4 flux measured by most of chambers showed the consistent sensitivity examined for the canopy scale to the environmental variables. CH4 fluxes from a few chambers located at a wet condition were independent of variations in soil temperature and moisture at both sites. Magnitude of soil CH4 uptake was higher than the canopy-scale CH4 uptake. Our results showed that the canopy-scale CH4 fluxes were totally different with the plot-scale CH4 fluxes by chambers, suggesting the considerable spatial heterogeneity in CH4 flux at the temperate forests.

Analysis of Evaporative Flux Over Irrigated and Unirrigated Pasture in the Wood River Basin

NASA Astrophysics Data System (ADS)

Cuenca, R. H.; Mahrt, L.; Hagimoto, Y.; Peterson, S.

2005-12-01

The reduction in evaporative fluxes due to withholding irrigation water for pasture in the Wood River subbasin of the Upper Klamath Basin was evaluated to estimate the potential benefit in subsequent streamflow. Two Campbell Scientific (CSI) Bowen ratio - energy balance systems were installed, one over a fully irrigated site and one over a non-irrigated site separated by approximately 11 km. The systems were comprised of an infrared gas analyzer for water vapor gradients, fine-wire thermocouples for temperature gradients, net radiometer and soil heat flux sensors. Additional micrometeorological sensors for precipitation, solar radiation, air temperature and relative humidity, wind speed and direction enabled calculation of a Penman-Monteith reference evapotranspiration. Both sites had uniform fetch conditions in excess of 1 km in the predominant upwind direction. Bowen ratio data were quality controlled using the Ohmura algorithm and energy balance components and fluxes computed every 20-min. Soil temperature and soil moisture profile sensors in six depth layers down to 80 cm were installed at the same sites and monitored every 15-min. High frequency (10-min) recording piezometers for water table monitoring were also installed. Both irrigated and unirrigated sites started the 2004 growing season with virtually the same soil moisture conditions due to over winter precipitation and melting of the snowpack. The evaporative flux rates from the two sites were nearly identical early in the season, and the repeatability of the diurnal fluxes at the two sites during this period is excellent. Towards the middle of the growing season, the evaporative flux rate at the irrigated site increased relative to the unirrigated site until at the end of the season there was approximately a 40 percent unbiased (dividing by the mean) difference between the two sites. The micrometeorological data indicate nearly uniform atmospheric conditions at the two sites due to turbulent mixing of the air mass within the valley. The persistence of the evaporative flux rate at the unirrigated site was probably due to contributions from the water table, as exhibited in the diurnal piezometer data. The difference in soil heat flux rates between the two sites after dry-down of the unirrigated site was relatively high and affected the difference in available energy (net radiation - soil heat flux). Initial application of LANDSAT data to integrate regional effects of unirrigated project lands over the basin is presented.

The influence of surface roughness and turbulence on heat fluxes from an oil palm plantation in Jambi, Indonesia

NASA Astrophysics Data System (ADS)

June, Tania; Meijide, Ana; Stiegler, Christian; Purba Kusuma, Alan; Knohl, Alexander

2018-05-01

Oil palm plantations are expanding vastly in Jambi, resulted in altered surface roughness and turbulence characteristics, which may influence exchange of heat and mass. Micrometeorological measurements above oil palm canopy were conducted for the period 2013–2015. The oil palms were 12.5 years old, canopy height 13 meters and 1.5 years old canopy height 2.5 m. We analyzed the influence of surface roughness and turbulence strenght on heat (sensible and latent) fluxes by investigating the profiles and gradient of wind speed, and temperature, surface roughness (roughness length, zo, and zero plane displacement, d), and friction velocity u*. Fluxes of heat were calculated using profile similarity methods taking into account atmospheric stability calculated using Richardson number Ri and the generalized stability factor ζ. We found that roughness parameters (zo, d, and u*) directly affect turbulence in oil palm canopy and hence heat fluxes; they are affected by canopy height, wind speed and atmospheric stability. There is a negative trend of d towards air temperature above the oil palm canopy, indicating the effect of plant volume and height in lowering air temperature. We propose studying the relation between zero plane displacement d with a remote sensing vegetation index for scaling up this point based analysis.

Evaluating Micrometeorological Estimates of Groundwater Discharge from Great Basin Desert Playas.

PubMed

Jackson, Tracie R; Halford, Keith J; Gardner, Philip M

2018-03-06

Groundwater availability studies in the arid southwestern United States traditionally have assumed that groundwater discharge by evapotranspiration (ET g ) from desert playas is a significant component of the groundwater budget. However, desert playa ET g rates are poorly constrained by Bowen ratio energy budget (BREB) and eddy-covariance (EC) micrometeorological measurement approaches. Best attempts by previous studies to constrain ET g from desert playas have resulted in ET g rates that are within the measurement error of micrometeorological approaches. This study uses numerical models to further constrain desert playa ET g rates that are within the measurement error of BREB and EC approaches, and to evaluate the effect of hydraulic properties and salinity-based groundwater density contrasts on desert playa ET g rates. Numerical models simulated ET g rates from desert playas in Death Valley, California and Dixie Valley, Nevada. Results indicate that actual ET g rates from desert playas are significantly below the uncertainty thresholds of BREB- and EC-based micrometeorological measurements. Discharge from desert playas likely contributes less than 2% of total groundwater discharge from Dixie and Death Valleys, which suggests discharge from desert playas also is negligible in other basins. Simulation results also show that ET g from desert playas primarily is limited by differences in hydraulic properties between alluvial fan and playa sediments and, to a lesser extent, by salinity-based groundwater density contrasts. Published 2018. This article is a U.S. Government work and is in the public domain in the USA.

Eddy Covariance Method for CO2 Emission Measurements: CCS Applications, Principles, Instrumentation and Software

NASA Astrophysics Data System (ADS)

Burba, George; Madsen, Rod; Feese, Kristin

2013-04-01

The Eddy Covariance method is a micrometeorological technique for direct high-speed measurements of the transport of gases, heat, and momentum between the earth's surface and the atmosphere. Gas fluxes, emission and exchange rates are carefully characterized from single-point in-situ measurements using permanent or mobile towers, or moving platforms such as automobiles, helicopters, airplanes, etc. Since the early 1990s, this technique has been widely used by micrometeorologists across the globe for quantifying CO2 emission rates from various natural, urban and agricultural ecosystems [1,2], including areas of agricultural carbon sequestration. Presently, over 600 eddy covariance stations are in operation in over 120 countries. In the last 3-5 years, advancements in instrumentation and software have reached the point when they can be effectively used outside the area of micrometeorology, and can prove valuable for geological carbon capture and sequestration, landfill emission measurements, high-precision agriculture and other non-micrometeorological industrial and regulatory applications. In the field of geological carbon capture and sequestration, the magnitude of CO2 seepage fluxes depends on a variety of factors. Emerging projects utilize eddy covariance measurement to monitor large areas where CO2 may escape from the subsurface, to detect and quantify CO2 leakage, and to assure the efficiency of CO2 geological storage [3,4,5,6,7,8]. Although Eddy Covariance is one of the most direct and defensible ways to measure and calculate turbulent fluxes, the method is mathematically complex, and requires careful setup, execution and data processing tailor-fit to a specific site and a project. With this in mind, step-by-step instructions were created to introduce a novice to the conventional Eddy Covariance technique [9], and to assist in further understanding the method through more advanced references such as graduate-level textbooks, flux networks guidelines, journals and technical papers. A free open-source software package with a user-friendly interface was developed accordingly for computing final fully corrected CO2 emission numbers [10]. The presentation covers highlights of the eddy covariance method, its application to geological carbon sequestration, key requirements, instrumentation and software, and reviews educational resources particularly useful for carbon sequestration research. References: [1] Aubinet, M., T. Vesala, and D. Papale (Eds.), 2012. Eddy Covariance: A Practical Guide to Measurement and Data Analysis. Springer-Verlag, 442 pp. [2] Foken T., 2008. Micrometeorology. Springer-Verlag, 308 pp. [4] Finley, R., 2009. An Assessment of Geological Carbon Sequestration in the Illinois Basin Overview of the Decatur-Illinois Basin Site. MGSC, http://www.istc.illinois.edu/info/govs_awards_docs/2009-GSA-1100-Finley.pdf [5] Liu, G. (Ed.), 2012. Greenhouse Gases: Capturing, Utilization and Reduction. Intech, 338 pp. [6] LI-COR Biosciences, 2011. Surface Monitoring for Geologic Carbon Sequestration Monitoring: Methods, Instrumentation, and Case Studies. LI-COR Biosciences, Pub. 980-11916, 15 pp. [7] Benson, S., 2006. Monitoring carbon dioxide sequestration in deep geological formations for inventory verification and carbon credits, SPE-102833, Presentation [8] Lewicki, J., G. Hilley, M. Fischer, L. Pan, C. Olden-burg, C. Dobeck, and L. Spangler, 2009.Eddy covariance observations of leakage during shallow subsurface CO2 releases. Journal of Geophys Res, 114: D12302 [9] Burba, G., 2013. Eddy Covariance Method for Scientific, Industrial, Agricultural and Regulatory Applications. LI-COR Biosciences, 328 pp. [10] LI-COR Biosciences, 2012. EddyPro 4.0: Help and User's Guide. Lincoln, NE, 208 pp.

Mars Micro-Meteorology Station Electronic Design, Assembly and Test Project

NASA Technical Reports Server (NTRS)

Twiggs, Robert J.; Merrihew, Seven; Engberg, Brian; Hicks, Michael; Tillier, Clemens

1996-01-01

The Micro-Met mission is a micro-meteorological experiment for Mars designed to take globally distributed pressure measurements for at least one martian year. A series of 16 landers equally spaced over the planet's surface will take pressure and temperature data and relay it to investigators on Earth. Measurements will be logged once every hour and transmitted to an orbiter once every thirty days using Mars Balloon Relay protocol. Micro-Met data will aid tremendously in the development and refinement of a global model of Martian weather.

Micrometeorological and Soil Data for Calculating Evapotranspiration for Rainier Mesa, Nevada Test Site, Nevada, 2002-05

USGS Publications Warehouse

DeMeo, Guy A.; Flint, Alan L.; Laczniak, Randell J.; Nylund, Walter E.

2006-01-01

Micrometeorological and soil-moisture data were collected at two instrumented sites on Rainier Mesa at the Nevada Test Site, January 1, 2002 - August 23, 2005. Data collected at each site include net radiation, air temperature, and relative humidity at two heights; wind speed and direction; subsurface soil heat flux; subsurface soil temperature; volumetric soil water; and matric water potential. These data were used to estimate 20-minute average and daily average evapotranspiration values. The data presented in this report are collected and calculated evapotranspiration rates.

Surface Renewal: Micrometeorological Measurements Avoiding the Sonic Anemometer

NASA Astrophysics Data System (ADS)

Suvocarev, K.; Reba, M. L.; Runkle, B.

2016-12-01

Surface renewal (SR) is micrometeorological technique that has been suggested as an inexpensive alternative to eddy covariance (EC). While it was originally dependent on a calibration coefficient (α), a recent approach by Castellví (2004) showed that SR can be used as a stand-alone method where α is estimated using similarity theory. This "self-calibration" method is suitable for measuring different scalar fluxes under all stability conditions (Castellví et. al, 2008). According to the same authors, SR does not demand a sonic anemometer as only the horizontal wind speed is necessary to arrive to α values. Therefore, it is more affordable and applicable in both roughness and inertial sub-layers which makes this method less stringent to fetch requirements (Castellví, 2012). The SR method has not yet been tested when the equipment is reduced to scalar measurements and a simple anemometer (RM Young 5103 Wind Monitor Sensor). Here, our objective was to test this approach over temperature, H2O, CO2 and CH4 time series. When EC is taken as a reference for a comparison, our initial results show that all fluxes measured by SR are higher than corresponding reference fluxes. The portion of overestimation is in the range of typical values reported by SR literature. Still, more research will be done to improve its understanding as the correlation between flux measurements is very high. The SR method seems to be promising in avoiding the use of sonic anemometry (and related errors) while maintaining fewer fetch requirements and the possibility to yield observations from all wind directions.

Review of methods for determination of ammonia volatilization in farmland

NASA Astrophysics Data System (ADS)

Yang, J.; Jiao, Y.; Yang, W. Z.; Gu, P.; Bai, S. G.; Liu, L. J.

2018-02-01

Ammonia is one of the most abundant alkaline trace gases in the atmosphere, which is one of the important factors affecting atmospheric quality. Excessive application of nitrogen fertilizer is the main source of global ammonia emissions, which not only exacerbate greenhouse gas emissions, but also leads to eutrophication of water bodies. In this paper, the basic principle, the operation process, the advantages and disadvantages, and the previous research results of the method are summarized in detail, including the enclosure method, the venting method, the continuous airflow enclosure method, the wind tunnel method and the micro-meteorological method. So as to provide a theoretical basis for selecting the appropriate method for determination of ammonia volatilization.

Multivariable Time Series Prediction for the Icing Process on Overhead Power Transmission Line

PubMed Central

Li, Peng; Zhao, Na; Zhou, Donghua; Cao, Min; Li, Jingjie; Shi, Xinling

2014-01-01

The design of monitoring and predictive alarm systems is necessary for successful overhead power transmission line icing. Given the characteristics of complexity, nonlinearity, and fitfulness in the line icing process, a model based on a multivariable time series is presented here to predict the icing load of a transmission line. In this model, the time effects of micrometeorology parameters for the icing process have been analyzed. The phase-space reconstruction theory and machine learning method were then applied to establish the prediction model, which fully utilized the history of multivariable time series data in local monitoring systems to represent the mapping relationship between icing load and micrometeorology factors. Relevant to the characteristic of fitfulness in line icing, the simulations were carried out during the same icing process or different process to test the model's prediction precision and robustness. According to the simulation results for the Tao-Luo-Xiong Transmission Line, this model demonstrates a good accuracy of prediction in different process, if the prediction length is less than two hours, and would be helpful for power grid departments when deciding to take action in advance to address potential icing disasters. PMID:25136653

Hydrologic and micrometeorologic data from an unsaturated zone study at a low-level radioactive waste burial site near Barnwell, South Carolina

USGS Publications Warehouse

Dennehy, K.F.; McMahon, P.B.

1985-01-01

Two years of selected hydrologic and micrometeorologic data collected at a low-level radioactive waste burial site near Barnwell, South Carolina are available on magnetic tape in card-image format. Hydrologic data include daily measurements of soil-moisture tension, soil-moisture specific conductance, and soil temperature at four monitoring site locations. Micrometeorlogic data include hourly measurements for the following parameters: dry- and wet-bulb temperatures, soil temperatures, soil heat flux, wind speeds and direction, incoming and reflected short-wave solar radiation, incoming and emitted long-wave radiation, net radiation and precipitation. (USGS)

Micrometeorological Mass Balance Measurements of Greenhouse Gas Emissions from Composting Green-waste

NASA Astrophysics Data System (ADS)

Kent, E. R.; Bailey, S.; Stephens, J.; Horwath, W. R.; Paw U, K.

2013-12-01

Managed decomposition of organic materials is increasingly being used as an alternative waste management option and the resulting compost can be used as a fertilizer and soil amendment in home gardens and agriculture. An additional benefit is the avoidance of methane emissions associated with anaerobic decomposition in landfills. Greenhouse gases are still emitted during the composting process, but few studies have measured emissions from a full-scale windrow of composting green-waste. This study uses a micrometeorological mass balance technique (upwind and downwind vertical profile measurements of trace gas concentrations and wind velocity) to calculate emissions of carbon dioxide, methane, and nitrous oxide from a pile of composting green-waste during the dry season in Northern California. The expected source pattern was observed in measured upwind-downwind concentration differences of all three gases averaged over the study period despite substantial noise seen in the half-hourly emission calculations. Sources of uncertainty are investigated and temporal patterns analyzed. An in-situ zero-source test was conducted to examine the mass balance technique when the source of emissions was removed. Results from the micrometeorological mass balance measurements are compared with measurements taken using the more common open chamber technique.

Influence of regional nighttime atmospheric regimes on canopy turbulence and gradients at a closed and open forest in mountain-valley terrain

DOE PAGES

Wharton, S.; Ma, S.; Baldocchi, D. D.; ...

2017-02-07

Stable stratification of the nocturnal lower boundary layer inhibits convective turbulence, such that turbulent vertical transfer of ecosystem carbon dioxide (CO 2), water vapor (H 2O) and energy is driven by mechanically forced turbulence, either from frictional forces near the ground or top of a plant canopy, or from shear generated aloft. The significance of this last source of turbulence on canopy flow characteristics in a closed and open forest canopy is addressed in this paper. We present micrometeorological observations of the lower boundary layer and canopy air space collected on nearly 200 nights using a combination of atmospheric lasermore » detection and ranging (lidar), eddy covariance (EC), and tower profiling instrumentation. Two AmeriFlux/Fluxnet sites in mountain-valley terrain in the Western U.S. are investigated: Wind River, a tall, dense conifer canopy, and Tonzi Ranch, a short, open oak canopy. On roughly 40% of nights lidar detected down-valley or downslope flows above the canopy at both sites. Nights with intermittent strong bursts of “top-down” forced turbulence were also observed above both canopies. The strongest of these bursts increased sub-canopy turbulence and reduced canopy virtual potential temperature (θv) gradient at Tonzi, but did not appear to change the flow characteristics within the dense Wind River canopy. At Tonzi we observed other times when high turbulence (via friction velocity, u*) was found just above the trees, yet CO2 and θv gradients remained large and suggested flow decoupling. These events were triggered by regional downslope flow. Lastly, a set of turbulence parameters is evaluated for estimating canopy turbulence mixing strength. The relationship between turbulence parameters and canopy θv gradients was found to be complex, although better agreement between the canopy θv gradient and turbulence was found for parameters based on the standard deviation of vertical velocity, or ratios of 3-D turbulence to mean flow, than for u*. These findings add evidence that the relationship between canopy turbulence, static stability, and canopy mixing is far from straightforward even within an open canopy.« less

Influence of regional nighttime atmospheric regimes on canopy turbulence and gradients at a closed and open forest in mountain-valley terrain

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wharton, S.; Ma, S.; Baldocchi, D. D.

Stable stratification of the nocturnal lower boundary layer inhibits convective turbulence, such that turbulent vertical transfer of ecosystem carbon dioxide (CO 2), water vapor (H 2O) and energy is driven by mechanically forced turbulence, either from frictional forces near the ground or top of a plant canopy, or from shear generated aloft. The significance of this last source of turbulence on canopy flow characteristics in a closed and open forest canopy is addressed in this paper. We present micrometeorological observations of the lower boundary layer and canopy air space collected on nearly 200 nights using a combination of atmospheric lasermore » detection and ranging (lidar), eddy covariance (EC), and tower profiling instrumentation. Two AmeriFlux/Fluxnet sites in mountain-valley terrain in the Western U.S. are investigated: Wind River, a tall, dense conifer canopy, and Tonzi Ranch, a short, open oak canopy. On roughly 40% of nights lidar detected down-valley or downslope flows above the canopy at both sites. Nights with intermittent strong bursts of “top-down” forced turbulence were also observed above both canopies. The strongest of these bursts increased sub-canopy turbulence and reduced canopy virtual potential temperature (θv) gradient at Tonzi, but did not appear to change the flow characteristics within the dense Wind River canopy. At Tonzi we observed other times when high turbulence (via friction velocity, u*) was found just above the trees, yet CO2 and θv gradients remained large and suggested flow decoupling. These events were triggered by regional downslope flow. Lastly, a set of turbulence parameters is evaluated for estimating canopy turbulence mixing strength. The relationship between turbulence parameters and canopy θv gradients was found to be complex, although better agreement between the canopy θv gradient and turbulence was found for parameters based on the standard deviation of vertical velocity, or ratios of 3-D turbulence to mean flow, than for u*. These findings add evidence that the relationship between canopy turbulence, static stability, and canopy mixing is far from straightforward even within an open canopy.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aslan, Z.; Topcu, S.

A central objective of micrometeorological research is to establish fluxes from a knowledge of the mean temperature, humidity and wind speed profiles. The effect of time and spatial variations of surface heat and momentum fluxes is studied for various geographic regions. These analysis show the principal boundary conditions for micro and meso-scale analysis, air-sea interactions, weather forecasting air pollution, agrometeorology and climate changing models. The fluxes of heat and momentum can be obtained from observed profiles of wind speed and temperature using the similarity relations for the atmospheric surface layer. In recent years, harmonic analysis is a particularly useful toolmore » in studying annual patterns of some meteorological parameters at the field of micrometeorological studies.« less

The surface renewal method for better spatial resolution of evapotranspiration measurements

NASA Astrophysics Data System (ADS)

Suvocarev, K.; Fischer, M.; Massey, J. H.; Reba, M. L.; Runkle, B.

2017-12-01

Evaluating feasible irrigation strategies when water is scarce requires measurements or estimations of evapotranspiration (ET). Direct observations of ET from agricultural fields are preferred, and micrometeorological methods such as eddy covariance (EC) provide a high quality, continuous time series of ET. However, when replicates of the measurements are needed to compare irrigation strategies, the cost of such experiments is often prohibitive and limits experimental scope. An alternative micrometeorological approach to ET, the surface renewal (SR) method, may be reduced to a thermocouple and a propeller anemometer (Castellvi and Snyder, 2009). In this case, net radiation, soil and sensible heat flux (H) are measured and latent heat flux (an energy equivalent for ET) is estimated as the residual of the surface energy-balance equation. In our experiment, thermocouples (Type E Fine-Wire Thermocouple, FW3) were deployed next to the EC system and combined with mean horizontal wind speed measurements to obtain H using SR method for three weeks. After compensating the temperature signal for non-ideal frequency response in the wavelet half-plane and correcting the sonic anemometer for the flow distortion (Horst et al., 2015), the SR H fluxes compared well to those measured by EC (r2 = 0.9, slope = 0.92). This result encouraged us to install thermocouples over 16 rice fields under different irrigation treatments (continuous cascade flood, continuous multiple inlet rice irrigation, alternate wetting and drying, and furrow irrigation). The EC measurements with net radiometer and soil heat flux plates are deployed at three of these fields to provide a direct comparison. The measurement campaign will finish soon and the data will be processed to evaluate the SR approach for ET estimation. The results will be used to show better spatial resolution of ET measurements to support irrigation decisions in agricultural crops.

Closure of the energy balance equation over bare soil during the formation and evaporation of non-rainfall water inputs

NASA Astrophysics Data System (ADS)

Florentin, Anat; Agam, Nurit

2015-04-01

The Negev desert is characterized by an arid climate (annual mean precipitation is 90 mm) with sea breeze carrying moisture from the Mediterranean Sea during the afternoon regularly. Non-rainfall water inputs (NRWIs) are thus of great importance to the hydrometeorology and the ecological functioning of the region. The small magnitude of NRWIs challenges attempts to quantify these processes. The aim of this research was to test commonly used micrometeorological methods to quantify the energy balance components during the deposition and evaporation of NRWIs. A fully equipped micrometeorological station was set up near the Blaustein Institutes for Desert Research of the Ben-Gurion University of the Negev (30o 51' 35.6" N; 34o 46' 24.8" E) during September-October 2014. Net-radiation was measured with a 4-way net radiometer, and soil heat flux was quantified by the calorimetric method in three replicates. Latent heat was measured using an eddy-covariance (EC) and compared to a micro-lysimeter (ML); sensible heat flux was measured with an EC and a surface layer scintillometer (SLS). Sensible heat fluxes measured by the EC and the SLS showed good agreement. EC latent heat fluxes were in good agreement with those derived by the ML. Nevertheless, derivation of latent heat flux from the SLS measurements through the energy balance equation showed a relatively large deviation from the directly measured latent heat flux. This deviation is likely attributed to measurement errors of the soil heat flux.

An ecosystem-scale perspective of the net land methanol flux. Synthesis of micrometeorological flux measurements

DOE PAGES

Wohlfahrt, G.; Amelynck, C.; Ammann, C.; ...

2015-07-09

Methanol is the second most abundant volatile organic compound in the troposphere and plays a significant role in atmospheric chemistry. While there is consensus about the dominant role of living plants as the major source and the reaction with OH as the major sink of methanol, global methanol budgets diverge considerably in terms of source/sink estimates, reflecting uncertainties in the approaches used to model and the empirical data used to separately constrain these terms. Here we compiled micrometeorological methanol flux data from eight different study sites and reviewed the corresponding literature in order to provide a first cross-site synthesis ofmore » the terrestrial ecosystem-scale methanol exchange and present an independent data-driven view of the land–atmosphere methanol exchange. Our study shows that the controls of plant growth on production, and thus the methanol emission magnitude, as well as stomatal conductance on the hourly methanol emission variability, established at the leaf level, hold across sites at the ecosystem level. Unequivocal evidence for bi-directional methanol exchange at the ecosystem scale is presented. Deposition, which at some sites even exceeds methanol emissions, represents an emerging feature of ecosystem-scale measurements and is likely related to environmental factors favouring the formation of surface wetness. Methanol may adsorb to or dissolve in this surface water and eventually be chemically or biologically removed from it. Management activities in agriculture and forestry are shown to increase local methanol emission by orders of magnitude; however, they are neglected at present in global budgets. While contemporary net land methanol budgets are overall consistent with the grand mean of the micrometeorological methanol flux measurements, we caution that the present approach of simulating methanol emission and deposition separately is prone to opposing systematic errors and does not allow for full advantage to be taken of the rich information content of micrometeorological flux measurements.« less

An ecosystem-scale perspective of the net land methanol flux: synthesis of micrometeorological flux measurements

PubMed Central

Wohlfahrt, G.; Amelynck, C.; Ammann, C.; Arneth, A.; Bamberger, I.; Goldstein, A. H.; Gu, L.; Guenther, A.; Hansel, A.; Heinesch, B.; Holst, T.; Hörtnagl, L.; Karl, T.; Laffineur, Q.; Neftel, A.; McKinney, K.; Munger, J. W.; Pallardy, S. G.; Schade, G. W.; Seco, R.; Schoon, N.

2015-01-01

Methanol is the second most abundant volatile organic compound in the troposphere and plays a significant role in atmospheric chemistry. While there is consensus about the dominant role of living plants as the major source and the reaction with OH as the major sink of methanol, global methanol budgets diverge considerably in terms of source/sink estimates reflecting uncertainties in the approaches used to model, and the empirical data used to separately constrain these terms. Here we compiled micrometeorological methanol flux data from eight different study sites and reviewed the corresponding literature in order to provide a first cross-site synthesis of the terrestrial ecosystem-scale methanol exchange and present an independent data-driven view of the land–atmosphere methanol exchange. Our study shows that the controls of plant growth on the production, and thus the methanol emission magnitude, and stomatal conductance on the hourly methanol emission variability, established at the leaf level, hold across sites at the ecosystem-level. Unequivocal evidence for bi-directional methanol exchange at the ecosystem scale is presented. Deposition, which at some sites even exceeds methanol emissions, represents an emerging feature of ecosystem-scale measurements and is likely related to environmental factors favouring the formation of surface wetness. Methanol may adsorb to or dissolve in this surface water and eventually be chemically or biologically removed from it. Management activities in agriculture and forestry are shown to increase local methanol emission by orders of magnitude; they are however neglected at present in global budgets. While contemporary net land methanol budgets are overall consistent with the grand mean of the micrometeorological methanol flux measurements, we caution that the present approach of simulating methanol emission and deposition separately is prone to opposing systematic errors and does not allow taking full advantage of the rich information content of micrometeorological flux measurements. PMID:25983744

Data processing with Pymicra, the Python tool for Micrometeorological Analyses

NASA Astrophysics Data System (ADS)

Chor, T. L.; Dias, N. L.

2017-12-01

With the ever-increasing capability of instrumentation of collecting high-frequency turbulence data, micrometeorological experiments are now generating significant amounts of data. Clearly, data processing -- and not data collection anymore -- has become the limiting factor for those very large data sets. The ability of extracting useful scientific information from those experiments, therefore, hinges on tools that (i) are able to process those data effectively and accurately, (ii) are flexible enough to be adapted to the specific requirements of each investigation, and (iii) are robust enough to make data analysis easily reproducible over different sets of large data sets. We have developed a framework for micrometeorological data analysis called Pymicra which does deliver such capabilities while maintaining proximity of the investigator with the data. It is fully written in an open-source, very high level language, Python, which has been gaining widespread acceptance as a scientific tool. It follows the philosophy of "not reinventing the wheel" and, as a result, relies on existing well-established open-source Python packages such as Numpy and Pandas. Thus, minimum effort is needed to program statistics, array processing, Fourier analysis, etc. Among the things that Pymicra does are reading and organizing data from virtually any format, applying common quality control procedures, extracting fluctuations in a number of ways, correcting for sensor drift, automatic calculation of fluid properties (such as air and dry air density), handling of units, calculation of cross-spectra, calculation of turbulent fluxes and scales, and all other features already provided by Pandas (interpolation, statistical tests, handling of missing data, etc.). Pymicra is freely available on Github and the fact that it makes heavy use of high-level programming makes adding and modifying code considerably easy for any scientific programmer, making it straightforward for other scientists to contribute with new functionality and point out room for improvements. Because of that, Pymicra is a candidate to be a community-developed code in the future and to centralize part of the data processing aimed at micrometeorology.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Greenberg, Jim; Penuelas, J.; Guenther, Alex B.

To survey landscape-scale fluxes of biogenic gases, a100-meterTeflon tube was attached to a tethered balloon as a sampling inlet for a fast response Proton Transfer Reaction Mass Spectrometer (PTRMS). Along with meteorological instruments deployed on the tethered balloon and at 3-mand outputs from a regional weather model, these observations were used to estimate landscape scale biogenic volatile organic compound fluxes with two micrometeorological techniques: mixed layer variance and surface layer gradients. This highly mobile sampling system was deployed at four field sites near Barcelona to estimate landscape-scale BVOC emission factors in a relatively short period (3 weeks). The two micrometeorologicalmore » techniques agreed within the uncertainty of the flux measurements at all four sites even though the locations had considerable heterogeneity in species distribution and complex terrain. The observed fluxes were significantly different than emissions predicted with an emission model using site-specific emission factors and land-cover characteristics. Considering the wide range in reported BVOC emission factors of VOCs for individual vegetation species (more than an order of magnitude), this flux estimation technique is useful for constraining BVOC emission factors used as model inputs.« less

Estimation of nocturnal CO2 and N2O soil emissions from changes in surface boundary layer mass storage

NASA Astrophysics Data System (ADS)

Grant, Richard H.; Omonode, Rex A.

2018-04-01

Annual budgets of greenhouse and other trace gases require knowledge of the emissions throughout the year. Unfortunately, emissions into the surface boundary layer during stable, calm nocturnal periods are not measurable using most micrometeorological methods due to non-stationarity and uncoupled flow. However, during nocturnal periods with very light winds, carbon dioxide (CO2) and nitrous oxide (N2O) frequently accumulate near the surface and this mass accumulation can be used to determine emissions. Gas concentrations were measured at four heights (one within and three above canopy) and turbulence was measured at three heights above a mature 2.5 m maize canopy from 23 July to 10 September 2015. Nocturnal CO2 and N2O fluxes from the canopy were determined using the accumulation of mass within a 6.3 m control volume and out the top of the control volume within the nocturnal surface boundary layer. Diffusive fluxes were estimated by flux gradient method. The total accumulative and diffusive fluxes during near-calm nights (friction velocities < 0.05 ms-1) averaged 1.16 µmol m-2 s-1 CO2 and 0.53 nmol m-2 s-1 N2O. Fluxes were also measured using chambers. Daily mean CO2 fluxes determined by the accumulation method were 90 to 130 % of those determined using soil chambers. Daily mean N2O fluxes determined by the accumulation method were 60 to 80 % of that determined using soil chambers. The better signal-to-noise ratios of the chamber method for CO2 over N2O, non-stationary flow, assumed Schmidt numbers, and anemometer tilt were likely contributing reasons for the differences in chambers versus accumulated nocturnal mass flux estimates. Near-surface N2O accumulative flux measurements in more homogeneous regions and with greater depth are needed to confirm the conclusion that mass accumulation can be effectively used to estimate soil emissions during nearly calm nights.

SUMO Micrometeorology

DOE Data Explorer

Sevanto, Sanna [Los Alamos National Laboratory; Dickman, Turin L. [Los Alamos National Laboratory; Collins, Adam [Los Alamos National Laboratory; Grossiord, Charlotte [Swiss Federal Institute for Forest Snow and Landscape Research; Adams, Henry [Oklahoma State University; Borrego, Isaac [USGS Southwest Biological Science Center; McDowell, Nate [Pacific Northwest National Laboratory (PNNL); Powers, Heath [Los Alamos National Laboratory; Stockton, Elizabeth [University of New Mexico; Ryan, Max [Los Alamos National Laboratory; Slentz, Matthew [Mohle Adams; Briggs, Sam [Fossil Creek Nursery; McBranch, Natalie [Los Alamos National Laboratory; Morgan, Bryn [Los Alamos National Laboratory

2018-01-01

The Los Alamos Survival–Mortality experiment (SUMO) is located on Frijoles Mesa near Los Alamos, New Mexico, USA, at an elevation of 2150 m. This was a tree manipulation study that investigated the relative impacts of drought and warming on plant function and reveals how trees adapt to drought and heat in semi-arid regions. The study factored the role of tree hydraulic acclimation to both precipitation and temperature and separated their effects.The experiment is located in a pinon-juniper woodland near the ponderosa pine (Pinus ponderosa) forest ecotone. Daily average ambient micrometeorological conditions at the SUMO site. See SUMO Target Tree Information data package (doi:10.15485/1440544) for additional information. Data released by Los Alamos National Lab for public use under LA-UR-18-23656.

Micrometeorological Technique for Monitoring of Geological Carbon Capture, Utilization and Storage: Methodology, Workflow and Resources

NASA Astrophysics Data System (ADS)

Burba, G. G.; Madsen, R.; Feese, K.

2013-12-01

The eddy covariance (EC) method is a micrometeorological technique for direct high-speed measurements of the transport of gases and energy between land or water surfaces and the atmosphere [1]. This method allows for observations of gas transport scales from 20-40 times per second to multiple years, represents gas exchange integrated over a large area, from hundreds of square meters to tens of square kilometres, and corresponds to gas exchange from the entire surface, including canopy, and soil or water layers. Gas fluxes, emission and exchange rates are characterized from single-point in situ measurements using permanent or mobile towers, or moving platforms such as automobiles, helicopters, airplanes, etc. Presently, over 600 eddy covariance stations are in operation in over 120 countries [1]. EC is now recognized as an effective method in regulatory and industrial applications, including CCUS [2-10]. Emerging projects utilize EC to continuously monitor large areas before and after the injections, to locate and quantify leakages where CO2 may escape from the subsurface, to improve storage efficiency, and for other CCUS characterizations [5-10]. Although EC is one of the most direct and defensible micrometeorological techniques measuring gas emission and transport, and complete automated stations and processing are readily available, the method is mathematically complex, and requires careful setup and execution specific to the site and project. With this in mind, step-by-step instructions were created in [1] to introduce a novice to the EC method, and to assist in further understanding of the method through more advanced references. In this presentation we provide brief highlights of the eddy covariance method, its application to geological carbon capture, utilization and storage, key requirements, instrumentation and software, and review educational resources particularly useful for carbon sequestration research. References: [1] Burba G. Eddy Covariance Method for Scientific, Industrial, Agricultural and Regulatory Applications. LI-COR Biosciences; 2013. [2] International Energy Agency. Quantification techniques for CO2 leakage. IEA-GHG; 2012. [3] US Department of Energy. Best Practices for Monitoring, Verification, and Accounting of CO2 Stored in Deep Geologic Formations. US DOE; 2012. [4] Liu G. (Ed.). Greenhouse Gases: Capturing, Utilization and Reduction. Intech; 2012. [5] Finley R. et al. An Assessment of Geological Carbon Sequestration Options in the Illinois Basin - Phase III. DOE-MGSC; DE-FC26-05NT42588; 2012. [6] LI-COR Biosciences. Surface Monitoring for Geologic Carbon Sequestration. LI-COR, 980-11916, 2011. [7] Lewicki J., Hilley G. Eddy covariance mapping and quantification of surface CO2 leakage fluxes. GRL, 2009; 36: L21802. [8] Finley R. An Assessment of Geological Carbon Sequestration in the Illinois Basin. Overview of the Decatur-Illinois Basin Site. DOE-MGSC; 2009. [9] Eggleston H., et al. (Eds). IPCC Guidelines for National Greenhouse Gas Inventories, IPCC NGGI P, WMO/UNEP; 2006-2011. [10] Burba G., Madsen R., Feese K. Eddy Covariance Method for CO2 Emission Measurements in CCUS Applications: Principles, Instrumentation and Software. Energy Procedia; Submitted: 1-8.

Testing the Simple Biosphere model (SiB) using point micrometeorological and biophysical data

NASA Technical Reports Server (NTRS)

Sellers, P. J.; Dorman, J. L.

1987-01-01

The suitability of the Simple Biosphere (SiB) model of Sellers et al. (1986) for calculation of the surface fluxes for use within general circulation models is assessed. The structure of the SiB model is described, and its performance is evaluated in terms of its ability to realistically and accurately simulate biophysical processes over a number of test sites, including Ruthe (Germany), South Carolina (U.S.), and Central Wales (UK), for which point biophysical and micrometeorological data were available. The model produced simulations of the energy balances of barley, wheat, maize, and Norway Spruce sites over periods ranging from 1 to 40 days. Generally, it was found that the model reproduced time series of latent, sensible, and ground-heat fluxes and surface radiative temperature comparable with the available data.

[Measurement and estimation methods and research progress of snow evaporation in forests].

PubMed

Li, Hui-Dong; Guan, De-Xin; Jin, Chang-Jie; Wang, An-Zhi; Yuan, Feng-Hui; Wu, Jia-Bing

2013-12-01

Accurate measurement and estimation of snow evaporation (sublimation) in forests is one of the important issues to the understanding of snow surface energy and water balance, and it is also an essential part of regional hydrological and climate models. This paper summarized the measurement and estimation methods of snow evaporation in forests, and made a comprehensive applicability evaluation, including mass-balance methods (snow water equivalent method, comparative measurements of snowfall and through-snowfall, snow evaporation pan, lysimeter, weighing of cut tree, weighing interception on crown, and gamma-ray attenuation technique) and micrometeorological methods (Bowen-ratio energy-balance method, Penman combination equation, aerodynamics method, surface temperature technique and eddy covariance method). Also this paper reviewed the progress of snow evaporation in different forests and its influencal factors. At last, combining the deficiency of past research, an outlook for snow evaporation rearch in forests was presented, hoping to provide a reference for related research in the future.

Characterization of vertical aerosol flows by single particle mass spectrometry for micrometeorological analysis

NASA Astrophysics Data System (ADS)

Gelhausen, Elmar; Hinz, Klaus-Peter; Schmidt, Andres; Spengler, Bernhard

2011-10-01

A single particle mass spectrometer LAMPAS 2 (Laser Mass Analyzer for Particles in the Airborne State) was combined with an ultrasonic anemometer to provide a measurement system for monitoring environmental substance exchange as caused by emission/deposition of aerosol particles. For this study, 681 mass spectra of detected particles were sorted into groups of similarity by a clustering algorithm leading to five classes of different particle types. Each single mass spectrum was correlated to corresponding anemometer data (vertical wind vector and wind speed) in a time-resolved analysis. Due to sampling constraints time-resolution was limited to 36 s, as a result of transition time distributions through the sampling tube. Vertical particle flow (emission/deposition) was determined for all particles based on these data as acquired during a measuring campaign in Giessen, Germany. For a selected particle class a detailed up- and downwards flow consideration was performed to prove the developed approach. Particle flow of that class was dominated by an emission trend as expected. The presented combination of single-particle mass spectrometry and ultrasonic anemometry provides for the possibility to correlate chemical particle data and wind data in a distinct assignment for the description of turbulent particle behavior near earth surface. Results demonstrate the ability to apply the method to real micrometeorological systems, if sampling issues are properly considered for an intended time resolution.

Case study: Rainfall partitioning across a natural-to-urban forest gradient during an extreme rain event

NASA Astrophysics Data System (ADS)

Akin, B. H.; Van Stan, J. T., II; Cote, J. F.; Jarvis, M. T.; Underwood, J.; Friesen, J.; Hildebrandt, A.; Maldonado, G.

2017-12-01

Trees' partitioning of rainfall is an important first process along the rainfall-to-runoff pathway that has economically significant influences on urban stormwater management. However, important knowledge gaps exist regarding (1) its role during extreme storms and (2) how this role changes as forest structure is altered by urbanization. Little research has been conducted on canopy rainfall partitioning during large, intense storms, likely because canopy water storage is rapidly overwhelmed (i.e., 1-3 mm) by short duration events exceeding, for example, 80 mm of rainfall. However, canopy structure controls more than just storage; it also affects the time for rain to drain to the surface (becoming throughfall) and the micrometeorological conditions that drive wet canopy evaporation. In fact, observations from an example extreme ( 100 mm with maximum 5-minute intensities exceeding 55 mm/h) storm across a urban-to-natural gradient in pine forests in southeast Georgia (USA), show that storm intensities were differentially dampened by 33% (tree row), 28% (forest fragment), and 17% (natural forests). In addition, maximum wet canopy evaporation rates were higher for the exposed tree row (0.18 mm/h) than for the partially-enclosed fragment canopy (0.14 mm/h) and the closed canopy natural forest site (0.11). This resulted in interception percentages decreasing from urban-to-natural stand structures (25% to 16%). A synoptic analysis of the extreme storm in this case study also shows that the mesoscale meteorological conditions that developed the heavy rainfall is expected to occur more often with projected climate changes.

Micrometeorological measurements during the Blackmo 88 spray trials

Treesearch

D. E. Anderson; D. R. Miller; Y. S. Wang; W. E. Yendol; M. L. McManus

1991-01-01

Instrumentation was arrayed on a 120 foot tower to detail the local atmospheric conditions during the Blackmo 88 spray experiment. Measurements were continuous for 30 minute periods encompassing each spray pass.

Observational study of atmospheric surface layer and coastal weather in northern Qatar

NASA Astrophysics Data System (ADS)

Samanta, Dhrubajyoti; Sadr, Reza

2016-04-01

Atmospheric surface layer is the interaction medium between atmosphere and Earth's surface. Better understanding of its turbulence nature is essential in characterizing the local weather, climate variability and modeling of turbulent exchange processes. The importance of Middle East region, with its unique geographical, economical and weather condition is well recognized. However, high quality micrometeorological observational studies are rare in this region. Here we show experimental results from micrometeorological observations from an experimental site in the coastal region of Qatar during August-December 2015. Measurements of winds are obtained from three sonic anemometers installed on a 9 m tower placed at Al Ghariyah beach in northern Qatar (26.08 °N, 51.36 °E). Different surface layer characteristics is analyzed and compared with earlier studies in equivalent weather conditions. Monthly statistics of wind speed, wind direction, temperature, humidity and heat index are made from concurrent observations from sonic anemometer and weather station to explore variations with surface layer characteristics. The results also highlights potential impact of sea breeze circulation on local weather and atmospheric turbulence. The observed daily maximum temperature and heat index during morning period may be related to sea breeze circulations. Along with the operational micrometeorological observation system, a camera system and ultrasonic wave measurement system are installed recently in the site to study coastline development and nearshore wave dynamics. Overall, the complete observational set up is going to provide new insights about nearshore wind dynamics and wind-wave interaction in Qatar.

Can Nocturnal Cold Air Drainage be Used to Monitor Ecosystem Function?

NASA Astrophysics Data System (ADS)

Pypker, T. G.; Unsworth, M. H.; Sulzman, E. W.; Lamb, B.; Allwine, G.; Mix, A. C.; Bond, B. J.

2005-12-01

Ecosystem carbon dynamics in flat, uniform terrain are commonly studied using standard micrometeorological techniques such as eddy covariance or gradient methods. But many of the world's ecosystems are in complex topography that is inappropriate for these methods. Nocturnal cold air drainage commonly occurs in mountainous terrain. This drainage provides an opportunity to monitor ecosystem carbon dynamics because as air flows downhill through a watershed, it collects respired CO2 from the soil and vegetation. If the nocturnal drainage can be treated as a river of air flowing down a valley, sampling this air from a tower at the base of a watershed could provide an estimate of ecosystem respiration and the 12C/13C ratio. To interpret the measured CO2 and the 12C/13C ratio, the characteristics of the drainage and the footprint (source area) of air passing the tower must be understood. To explore the potential of using nocturnal cold air drainage we built a 37 m tower at the base of a deeply incised watershed of ~40 y-old Douglas-fir in the Oregon Cascades. At various heights on the tower we monitored air temperature, wind speed/direction, and the CO2 concentration and 12C/13C isotopic ratio with a combination of thermistors, sonic anemometers (2-D and 3-D) and a CO2 profile system. The temperature gradient along the axis of the watershed was monitored by 30 temperature sensors from the base to the top of the watershed. The maximum drainage windspeeds on the tower occurred near sunset and, unlike past reports of cold air drainage, this drainage was very deep (> 37 m). The drainage became well mixed when the vertical profile of potential temperature became isothermal. It remained well mixed through the night into the early morning. The drainage occurred on most summer nights and typically provided a range of CO2 (> 60 ppm) sufficient for "Keeling plot" analysis. In September 2005, we released a tracer in the watershed (SF6) to determine the varying footprint size of the tower. The footprint size and windspeed varied throughout the night, resulting in a change in the CO2 concentration at the tower. Further analysis will determine how the CO2 passing the tower is altered by entrainment of the air overlying the drainage and the change in the source area of the drainage.

Atmospheric Boundary Layer of a pasture site in Amazônia

NASA Astrophysics Data System (ADS)

Trindade de Araújo Tiburtino Neves, Theomar; Fisch, Gilberto; Raasch, Siegfried

2013-04-01

A great effort has been made by the community of micrometeorology and planetary boundary layer for a better description of the properties of the Atmospheric Boundary Layer (ABL), such as its height, thermodynamics characteristics and its time evolution. This work aims to give a review of the main characteristics of Atmospheric Boundary Layer over a pasture site in Amazonia. The measurements dataset was carried out from 3 different LBA field campaigns: RBLE 3 (during the dry season from 1993), RaCCI (during the dry-to-wet transition season from 2002) and WetAMC (during the wet season from 1999), collected with tethered balloon, radiosondes and eddy correlation method in a pasture site in the southwestern Amazonia. Different techniques and instruments were used to estimate the ABĹs properties. During the daytime, it was possible to observe that there is an abrupt growth of the Convective Boundary Layer (CBL) between 08 and 11 LT, with a stationary pattern between 14 and 17 LT. The maximum heights at late afternoon were around 1600 m during the dry season, whilst the wet season it only reached 1000 m. This is due to the lower surface turbulent sensible heat flux as the soil is wetter and the partition of energy is completely different between wet to the dry season. For the transition period (RaCCI 2002), it was possible to analyze and compare several estimates from different instruments and methods. It showed that the parcel method overestimates the heights of all measurements (mainly at 14 LT) due to the high incidence of solar radiation and superadiabatic gradients. The profile and Richardson number methods gave results very similar to estimate the height of the CBL. The onset of the Nocturnal Boundary Layer (NBL) occurs before the sunset (18 LT) and its height is reasonable stable during the night (typical values around 180-250 m). An alternative method (Vmax) which used the height of the maximum windspeed derived from a SODAR instrument during RaCCI 2002 was proposed and it showed to be satisfactory comparing with the others methods. Besides that, it has the advantage to have measurements each 30 min.

Weather Measurements around Your School. Mapping Variations in Temperature and Humidity.

ERIC Educational Resources Information Center

Smith, David R.; And Others

1991-01-01

Presented is an activity where students conduct a micrometeorological study in their neighborhood using temperature, humidity measurements, and mapping skills. Included are a discussion of surface weather observations, the experiment, and directions. (KR)

Development of a methodology examining the behaviours of VOCs source apportionment with micro-meteorology analysis in an urban and industrial area.

PubMed

Xiang, Yang; Delbarre, Hervé; Sauvage, Stéphane; Léonardis, Thierry; Fourmentin, Marc; Augustin, Patrick; Locoge, Nadine

2012-03-01

During summer 2009, online measurements of 25 Volatile Organic Compounds (VOCs) from C6 to C10 as well as micro-meteorological parameters were simultaneously performed in the industrial city of Dunkerque. With the obtained data set, we developed a methodology to examine how the contributions of different source categories depend on atmospheric turbulences, and the results provided identification of emission modes. Eight factors were resolved by using Positive Matrix Factorization model and three of them were associated with mixed sources. The observed behaviours of contributions with turbulences lead to attribute some factors with sources at ground level, and some other factors with sources in the upper part of surface layer. The impact of vertical turbulence on the pollutant dispersion is also affected by the distance between sources and receptor site. Copyright © 2011 Elsevier Ltd. All rights reserved.

Analysis of field measurements of carbon dioxide and water vapor fluxes

NASA Technical Reports Server (NTRS)

Verma, Shashi B.

1991-01-01

Analysis of the field measurements of carbon dioxide and water vapor fluxes is discussed. These data were examined in conjunction with reflectance obtained from helicopter mounted Modular Multiband Radiometer. These measurements are representative of the canopy scale (10 to 100 m)(exp 2) and provide a good basis for investigating the hypotheses/relationship potentially useful in remote sensing applications. All the micrometeorological data collected during FIFE-89 were processed and fluxes of CO2, water vapor, and sensible heat were calculated. Soil CO2 fluxes were also estimated. Employing these soil CO2 flux values, in conjunction with micrometeorological measurements, canopy photosynthesis is being estimated. A biochemical model of leaf photosynthesis was adapted to the prairie vegetation. The modeled leaf photosynthesis rates were scaled up to the canopy level. This model and a multiplicative stomatal conductance model are also used to calculate canopy conductance.

The measurement of the ground wind structure at Wallops Island

NASA Technical Reports Server (NTRS)

Tielman, H. W.

1981-01-01

The mean and turbulence characteristics of the surface wind measured near the Atlantic coast were measured. The experimental data were acquired from a 76 meter tall instrumented micrometeorological tower. Mean wind and turbulence measurements were made with two types of instrumentation consisting of cup vane and temperature probes, primarily used for mean profile measurements of velocity and temperature respectively. The second system, a hot film and thermocouple system, was used for measurement of turbulence variances and covariances and spectra. The cup vane system was used to acquire data from all wind directions, while the hot film system was primarily used for turbulence measurements from the two prevailing wind directions, south and northwest. The micrometeorological tower is a self standing nonguyed tower with five working platforms at 15.2m (50 ft.) intervals, with cup vane and aspirated temperature probes mounted at each platform.

On the Micrometeorology of the Southern Great Plains. 2: Turbulence Statistics

NASA Astrophysics Data System (ADS)

Hicks, Bruce B.; Pendergrass, W. R.; Vogel, C. A.; Keener, R. N.; Leyton, S. M.

2015-03-01

Fast-response micrometeorological data obtained from an instrumented 32-m tower at an arid site near Ocotillo, Texas are used to examine the daily time evolution of the lower atmosphere. Correlation coefficients between turbulence properties (fast response wind-speed components and temperature) confirm that over this sparsely vegetated site the effects of convection are observed soon after sunrise, well ahead of the morning transition from stable to unstable stratification. Details of this kind are obscured when results are considered as functions of conventional stability parameters, since such standard analytical methods combine features of the morning and evening transitions into a single presentation. Partial correlation coefficients and semi-partials indicate that the local turbulent kinetic energy is mainly associated with local fluxes of heat and momentum near neutral and in most stable conditions, but decreases substantially during the times of strongest instability (possibly reflecting the scatter introduced by sampling infrequent convective episodes using a single tower). For many of the variables considered here, the standard deviations are about the same as the linear averages, indicating that the distributions are close to log-normal. The present data indicate that if the intent is to address some specific situation then 10 % error bounds on turbulence quantities (e.g. fluxes) correspond to averaging over a distance scale of the order of 10 km and a time scale of about 3 h. As the distance and time scales become smaller, the uncertainties due to factors external to the local surface increase.

A comparison of water use and water-use-efficiency of maize and biomass sorghum in the rain-fed, Midwestern, US.

NASA Astrophysics Data System (ADS)

Roby, M.; Salas Fernandez, M.; VanLoocke, A. D.

2014-12-01

There is growing consensus among model projections that climate change may increase the frequency and intensity of drought in the rain-fed, maize-dominated, Midwestern US. Uncertainty in the availability of water, combined with an increased demand for non-grain ethanol feedstock, may necessitate expanding the production of more water-use-efficient and less drought sensitive crops for biomass applications. Research suggests that biomass sorghum [Sorghum bicolor (L.) Moench] is more drought tolerant and can produce more biomass than maize in water-limiting environments; however, sorghum water use data are limited for the rain-fed Midwestern US. To address this gap, a replicated (n=3) side-by-side trial was established in Ames, Iowa to determine cumulative water use and water-use-efficiency of maize and biomass sorghum. Data were collected by micrometeorological stations located in the center of each plot and used to calculate cumulative evapotranspiration throughout the 2014 growing season using the residual energy balance method. Continuous micrometeorological measurements were supplemented by periodic measurements of leaf area index (LAI) and above-ground biomass. At mid-point of the growing season, preliminary data analysis revealed similar water use for sorghum and maize. Data collection will continue for the remainder of the growing season, at which point a stronger conclusion can be drawn. This research will provide important insight on the potential hydrologic effects of expanding biomass sorghum production in the Midwestern, US.

A continuous-flow denuder for the measurement of ambient concentrations and surface-exchange fluxes of ammonia

NASA Astrophysics Data System (ADS)

Wyers, G. P.; Otjes, R. P.; Slanina, J.

A new diffusion denuder is described for the continuous measurement of atmospheric ammonia. Ammonia is collected in an absorption solution in a rotating denuder, separated from interfering compounds by diffusion through a semi-permeable membrane and detected by conductometry. The method is free from interferences by other atmospheric gases, with the exception of volatile amines. The detection limit is 6 ng m -3 for a 30-min integration time. This compact instrument is fully automated and suited for routine deployment in field studies. The precision is sufficiently high for micrometeorological studies of air-surface exchange of ammonia.

Experimental and numerical test of the micrometeorological mass difference technique for the measurement of trace gas emissions from small plots.

PubMed

Magliulo, Vincenzo; Alterio, Giovanni; Peressotti, Alessandro

2004-05-01

Micrometeorological methods for measuring fluxes of gases between the land surface and the atmosphere are non-invasive: in fact, they do not interfere with natural processes of gas exchange. The Micrometeorological Mass Difference (MMD) approach can be used for many environmental monitoring purposes, such as to measure methane and carbon dioxide emission from landfills, methane production by grazing animals, trace gas emission from waste products and from agricultural soils, photosynthesis, and transpiration of plant canopies. The purpose of this study is to adapt the MMD technique, originally developed in Australia, to monitor CO2 and trace gases exchange rate at the plot level. Comparison of different treatments in replicated experiments requires plots of few rather than tens of meters. The tests reported here were performed on a square area (4 m x 4 m) in the meteorological field of the experimental farm of CNR-ISAFOM located in Vitulazio, province of Caserta, Italy (40 degrees 07' N, 14 degrees 50' E, 25 m above sea level) and consisted of the release of pure CO2 at different rates (1.7, 1.3, 0.6 L min(-1)) from a single source on the ground in the center of the experimental area and the consequent measurement of the environmental variables (wind speed and direction, CO2 concentration) at different times at four heights (up to 1.2 m) in order to compute the mass balance according to MMD technique. Measured flow rates well accounted for the mass of CO2 released. A flow underestimation occurred when wind speed dropped below 1.5 m s(-1), in accord with the previous findings obtained in Australia: this happened because anemometers can stall at low speeds, and their measurements are unreliable and because of significant loss of mass from the top of the apparatus. The experimental results were compared with outputs of Computational Fluid Dynamic (CFD) simulations. The commercial CFD package Fluent was used to evaluate performances and sources of errors. According to the experimental and numerical results, the MMD apparatus in our present configuration is suitable to be used for the monitoring of trace gas emissions of experimental plots. Advantages and limits of the present approach are discussed.

Gas-particle interactions above a Dutch heathland: I. Surface exchange fluxes of NH3, SO2, HNO3 and HCl

NASA Astrophysics Data System (ADS)

Nemitz, E.; Sutton, M. A.; Wyers, G. P.; Jongejan, P. A. C.

2004-07-01

A field measurement campaign was carried out over a Dutch heathland to investigate the effect of gas-to-particle conversion and ammonium aerosol evaporation on surface/atmosphere fluxes of ammonia and related species. Continuous micrometeorological measurements of the surface exchange of NH3, SO2, HNO3 and HCl were made and are analyzed here with regard to average fluxes, deposition velocities (Vd), canopy resistances (Rc) and canopy compensation point for NH3. Gradients of SO2, HNO3 and HCl were measured with a novel wet-denuder system with online anion chromatography. Measurements of HNO3 and HCl indicate an Rc of 100 to 200 s m-1 during warm daytime periods, probably at least partly due to non-zero acid partial pressures above NH4NO3 and NH4Cl on the leaf surfaces. Although it is likely that this observation is exacerbated by the effect of the evaporation of airborne NH4+ on the gradient measurements, the findings nevertheless add to the growing evidence that HNO3 and HCl are not always deposited at the maximum rate. Ammonia (NH3) fluxes show mainly deposition, with some periods of significant daytime emission. The net exchange could be reproduced both with an Rc model (deposition fluxes only) using resistance parameterizations from former measurements, as well as with the canopy compensation point model, using parameterizations derived from the measurements. The apoplastic ratio of ammonium and hydrogen concentration (Γs=[NH4+]/[H+]) of 1200 estimated from the measurements is large for semi-natural vegetation, but smaller than indicated by previous measurements at this site.

Gas-particle interactions above a Dutch heathland: I. Surface exchange fluxes of NH3, SO2, HNO3 and HCl

NASA Astrophysics Data System (ADS)

Nemitz, E.; Sutton, M. A.; Wyers, G. P.; Jongejan, P. A. C.

2004-03-01

A field measurement campaign was carried out over a Dutch heathland to investigate the effect of gas-to-particle conversion and ammonium aerosol evaporation on surface/atmosphere fluxes of ammonia and related species. Continuous micrometeorological measurements of the surface exchange of NH3, SO2, HNO3 and HCl were made and are analyzed here with regard to average fluxes, deposition velocities (Vd), canopy resistances (Rc) and canopy compensation point for NH3. Gradients of SO2, HNO3 and HCl were measured with a novel wet-denuder system with online anion chromatography. Measurements of HNO3 and HCl indicate an Rc of 100 to 200 s m-1 during warm daytime periods, probably at least partly due to non-zero acid partial pressures above NH4NO3 and NH4Cl on the leaf surfaces. Although it is likely that this observation is exacerbated by the effect of the evaporation of airborne NH4+ on the gradient measurements, the findings nevertheless add to the growing evidence that HNO3 and HCl are not always deposited at the maximum rate. Ammonia (NH3) fluxes show mainly deposition, with some periods of significant daytime emission. The net exchange could be reproduced both with an Rc model (deposition fluxes only) using resistance parameterizations from former measurements, as well as with the canopy compensation point model, using parameterizations derived from the measurements. The apoplastic ratio of ammonium and hydrogen concentration (Γs=[NH4+]/[H+]) of 1200 estimated from the measurements is large for semi- natural vegetation, but smaller than indicated by previous measurements at this site.

Pasture-scale measurement of methane emissions of grazing cattle

USDA-ARS?s Scientific Manuscript database

Quantifying methane emission of cattle grazing on southern Great Plains pastures using micrometeorology presents several challenges. Cattle are elevated, mobile point sources of methane, so that knowing their location in relation to atmospheric methane concentration measurements becomes critical. St...

Diurnal and Seasonal Trends in Canopy Transpiration and Conductance of Pristine Forest Types in Belize, Central America

NASA Technical Reports Server (NTRS)

Zimmermann, R.; Oren, R.; Billings, S.; Muller-Ezards, C.; Schaaff, C.; Strohmeier, P.; Obermaier, E.

1994-01-01

Five semi-deciduous broadleaf forest types growing over tropical karst in Belize, Central America, were monitored for three years to study diurnal and seasonal changes of transpiration and micro-meteorologic conditions.

Assessing Crop Coefficients for Natural Vegetated Areas Using Satellite Data and Eddy Covariance Stations.

PubMed

Corbari, Chiara; Ravazzani, Giovanni; Galvagno, Marta; Cremonese, Edoardo; Mancini, Marco

2017-11-18

The Food and Agricultural Organization (FAO) method for potential evapotranspiration assessment is based on the crop coefficient, which allows one to relate the reference evapotranspiration of well irrigated grass to the potential evapotranspiration of specific crops. The method was originally developed for cultivated species based on lysimeter measurements of potential evapotranspiration. Not many applications to natural vegetated areas exist due to the lack of available data for these species. In this paper we investigate the potential of using evapotranspiration measurements acquired by micrometeorological stations for the definition of crop coefficient functions of natural vegetated areas and extrapolation to ungauged sites through remotely sensed data. Pastures, deciduous and evergreen forests have been considered and lower crop coefficient values are found with respect to FAO data.

The Microclimate of a Tropical Evergreen Forest.

DTIC Science & Technology

1980-08-01

of Human Bioclimate - A Review. World Meteorological Organization Bulletin, Geneva, 56 pp. REFERENCES (con’t) Lee, R., 1978. Forest Micrometeorology...Geophysics, and Bioclimatology , Ser. B 24, 243-251. Pinker, R. (1980): The Microclimate of a dry tropical forest. (Accepted for publication in

Inverse-dispersion technique for assessing lagoon gas emissions

USDA-ARS?s Scientific Manuscript database

Measuring gas emissions from treatment lagoons and storage ponds poses challenging conditions for existing micrometeorological techniques because of non-ideal wind conditions, such as those induced by trees and crops surrounding the lagoons, and lagoons with dimensions too small to establish equilib...

Observational Studies of Parameters Influencing Air-sea Gas Exchange

NASA Astrophysics Data System (ADS)

Schimpf, U.; Frew, N. M.; Bock, E. J.; Hara, T.; Garbe, C. S.; Jaehne, B.

A physically-based modeling of the air-sea gas transfer that can be used to predict the gas transfer rates with sufficient accuracy as a function of micrometeorological parameters is still lacking. State of the art are still simple gas transfer rate/wind speed relationships. Previous measurements from Coastal Ocean Experiment in the Atlantic revealed positive correlations between mean square slope, near surface turbulent dis- sipation, and wind stress. It also demonstrated a strong negative correlation between mean square slope and the fluorescence of surface-enriched colored dissolved organic matter. Using heat as a proxy tracer for gases the exchange process at the air/water interface and the micro turbulence at the water surface can be investigated. The anal- ysis of infrared image sequences allow the determination of the net heat flux at the ocean surface, the temperature gradient across the air/sea interface and thus the heat transfer velocity and gas transfer velocity respectively. Laboratory studies were carried out in the new Heidelberg wind-wave facility AELOTRON. Direct measurements of the Schmidt number exponent were done in conjunction with classical mass balance methods to estimate the transfer velocity. The laboratory results allowed to validate the basic assumptions of the so called controlled flux technique by applying differ- ent tracers for the gas exchange in a large Schmidt number regime. Thus a modeling of the Schmidt number exponent is able to fill the gap between laboratory and field measurements field. Both, the results from the laboratory and the field measurements should be able to give a further understanding of the mechanisms controlling the trans- port processes across the aqueous boundary layer and to relate the forcing functions to parameters measured by remote sensing.

Micrometeorological Observations in a Sierra Nevada Meadow

NASA Astrophysics Data System (ADS)

Blackburn, D. A.; Oliphant, A. J.

2016-12-01

Mountain meadows play important roles on watershed and ecosystem services, including improving water quality, moderating runoff and providing biodiversity hotspots. In the Sierra Nevada, mountain meadows are an integral part of the mountain ecosystem and watersheds that impact more than 20 million people. Grazing, logging and other forms of anthropogenic land use in the Sierra Nevada have degraded the functioning of meadows, by altering the morphology, hydrology and vegetation. Existing meandering stream networks become incised and straightened by increased runoff, which effectively lowers the water table and completely alters the ecosystem from moist meadow sedges, grasses, and herbs to dryland grass and shrubs. Given the large growth cycle in healthy meadows, it is also expected that they sequester a significant amount of carbon and enhance atmospheric humidity through evapotranspiration, but relatively little work has been done on the bio-micrometeorology of meadows. The purpose of this study is to assess the growing season carbon, water and energy budgets of a partly degraded meadow in the northern Sierra Nevada. Loney Meadow, located at nearly 2,000 m in the Tahoe National Forest, has been identified as a degraded meadow and is scheduled to undergo restoration work to raise the water table in 2017. A micrometeorological tower with eddy covariance instruments was deployed at the site for most of the snow-free period from May to October 2016. The measurements include: fluxes of CO2, water vapor, surface radiation and energy budget components; ancillary meteorological and soil data; and an automated camera capturing daily images of the meadow surface. The poster will present diurnal and seasonal CO2 on a daily basis with a very rapid increase at the onset of the growing season.

Investigation and Modeling of Cranberry Weather Stress.

NASA Astrophysics Data System (ADS)

Croft, Paul Joseph

Cranberry bog weather conditions and weather-related stress were investigated for development of crop yield prediction models and models to predict daily weather conditions in the bog. Field investigations and data gathering were completed at the Rutgers University Blueberry/Cranberry Research Center experimental bogs in Chatsworth, New Jersey. Study indicated that although cranberries generally exhibit little or no stomatal response to changing atmospheric conditions, the evaluation of weather-related stress could be accomplished via use of micrometeorological data. Definition of weather -related stress was made by establishing critical thresholds of the frequencies of occurrence, and magnitudes of, temperature and precipitation in the bog based on values determined by a review of the literature and a grower questionnaire. Stress frequencies were correlated with cranberry yield to develop predictive models based on the previous season's yield, prior season data, prior and current season data, current season data; and prior and current season data through July 31 of the current season. The predictive ability of the prior season models was best and could be used in crop planning and production. Further examination of bog micrometeorological data permitted the isolation of those weather conditions conducive to cranberry scald and allowed for the institution of a pilot scald advisory program during the 1991 season. The micrometeorological data from the bog was also used to develop models to predict daily canopy temperature and precipitation, based on upper air data, for grower use. Models were developed for each month for maximum and minimum temperatures and for precipitation and generally performed well. The modeling of bog weather conditions is an important first step toward daily prediction of cranberry weather-related stress.

Evaluating the convergence between eddy-covariance and biometric methods for assessing carbon budgets of forests.

PubMed

Campioli, M; Malhi, Y; Vicca, S; Luyssaert, S; Papale, D; Peñuelas, J; Reichstein, M; Migliavacca, M; Arain, M A; Janssens, I A

2016-12-14

The eddy-covariance (EC) micro-meteorological technique and the ecology-based biometric methods (BM) are the primary methodologies to quantify CO 2 exchange between terrestrial ecosystems and the atmosphere (net ecosystem production, NEP) and its two components, ecosystem respiration and gross primary production. Here we show that EC and BM provide different estimates of NEP, but comparable ecosystem respiration and gross primary production for forest ecosystems globally. Discrepancies between methods are not related to environmental or stand variables, but are consistently more pronounced for boreal forests where carbon fluxes are smaller. BM estimates are prone to underestimation of net primary production and overestimation of leaf respiration. EC biases are not apparent across sites, suggesting the effectiveness of standard post-processing procedures. Our results increase confidence in EC, show in which conditions EC and BM estimates can be integrated, and which methodological aspects can improve the convergence between EC and BM.

Evaluating the convergence between eddy-covariance and biometric methods for assessing carbon budgets of forests

NASA Astrophysics Data System (ADS)

Campioli, M.; Malhi, Y.; Vicca, S.; Luyssaert, S.; Papale, D.; Peñuelas, J.; Reichstein, M.; Migliavacca, M.; Arain, M. A.; Janssens, I. A.

2016-12-01

The eddy-covariance (EC) micro-meteorological technique and the ecology-based biometric methods (BM) are the primary methodologies to quantify CO2 exchange between terrestrial ecosystems and the atmosphere (net ecosystem production, NEP) and its two components, ecosystem respiration and gross primary production. Here we show that EC and BM provide different estimates of NEP, but comparable ecosystem respiration and gross primary production for forest ecosystems globally. Discrepancies between methods are not related to environmental or stand variables, but are consistently more pronounced for boreal forests where carbon fluxes are smaller. BM estimates are prone to underestimation of net primary production and overestimation of leaf respiration. EC biases are not apparent across sites, suggesting the effectiveness of standard post-processing procedures. Our results increase confidence in EC, show in which conditions EC and BM estimates can be integrated, and which methodological aspects can improve the convergence between EC and BM.

Evaluating the convergence between eddy-covariance and biometric methods for assessing carbon budgets of forests

PubMed Central

Campioli, M.; Malhi, Y.; Vicca, S.; Luyssaert, S.; Papale, D.; Peñuelas, J.; Reichstein, M.; Migliavacca, M.; Arain, M. A.; Janssens, I. A.

2016-01-01

The eddy-covariance (EC) micro-meteorological technique and the ecology-based biometric methods (BM) are the primary methodologies to quantify CO2 exchange between terrestrial ecosystems and the atmosphere (net ecosystem production, NEP) and its two components, ecosystem respiration and gross primary production. Here we show that EC and BM provide different estimates of NEP, but comparable ecosystem respiration and gross primary production for forest ecosystems globally. Discrepancies between methods are not related to environmental or stand variables, but are consistently more pronounced for boreal forests where carbon fluxes are smaller. BM estimates are prone to underestimation of net primary production and overestimation of leaf respiration. EC biases are not apparent across sites, suggesting the effectiveness of standard post-processing procedures. Our results increase confidence in EC, show in which conditions EC and BM estimates can be integrated, and which methodological aspects can improve the convergence between EC and BM. PMID:27966534

Influence of Agricultural Practices on Micrometerological Spatial Variations at Local and Regional Scales

USDA-ARS?s Scientific Manuscript database

Soil-vegetation-atmosphere transfers significantly influence interactions and feedbacks between vegetation and boundary layer in relation with plant phenology and water status. The current study focused on linking micrometeorological conditions to cultural practices at the local and regional scales ...

EVALUATION OF SOLID ADSORBENTS FOR THE COLLECTION AND ANALYSES OF AMBIENT BIOGENIC VOLATILE ORGANICS

EPA Science Inventory

Micrometeorological flux measurements of biogenic volatile organic compounds (BVOCs) usually require that large volumes of air be collected (whole air samples) or focused during the sampling process (cryogenic trapping or gas-solid partitioning on adsorbents) in order to achiev...

ATMOSPHERIC DISPERSION IN THE ARCTIC: WINTERTIME BOUNDARY-LAYER MEASUREMENTS

EPA Science Inventory

The wintertime arctic atmospheric boundary layer was investigated with micro-meteorological and SF6 tracer measurements collected in Prudhoe Bay, AK. he flat, snow-covered tundra surface at this site generates a very small (0.03 cm) surface roughness. he relatively warm maritime ...

Grape Berry Acclimation to Excessive Solar Irradiance Leads to Repartitioning between Major Flavonoid Groups.

PubMed

Reshef, N; Agam, N; Fait, A

2018-04-11

Warm viticulture regions are associated with inferior wines, resulting from the interaction between microclimate and fruit biochemistry. Solar irradiance triggers biosynthetic processes in the fruit and dominates its thermal balance. Therefore, deciphering its impact on fruit metabolism is pivotal to develop strategies for fruit protection and ameliorate its quality traits. Here, we modified light quality and intensity in the fruit-zone and integrated micrometeorology with grape and wine metabolomics, allowing a complete assessment, from field to bottle. We analyzed the dynamics of fruit's adaptation to altered conditions during ripening and constructed temporal-based metabolic networks. Micrometeorological modifications shifted the balance between the major flavonoids, associating increased solar exposure with lower levels of anthocyanins and flavan-3-ols, and higher flavonols. Differences were fixed from 2 weeks postveraison until harvest, suggesting a controlled acclimation response rather than external modulation. Differences in grape composition manifested in the wine and resulted in higher color intensity and improved wine hue under partial shading.

Identifying tropical dry forests extent and succession via the use of machine learning techniques

NASA Astrophysics Data System (ADS)

Li, Wei; Cao, Sen; Campos-Vargas, Carlos; Sanchez-Azofeifa, Arturo

2017-12-01

Information on ecosystem services as a function of the successional stage for secondary tropical dry forests (TDFs) is scarce and limited. Secondary TDFs succession is defined as regrowth following a complete forest clearance for cattle growth or agriculture activities. In the context of large conservation initiatives, the identification of the extent, structure and composition of secondary TDFs can serve as key elements to estimate the effectiveness of such activities. As such, in this study we evaluate the use of a Hyperspectral MAPper (HyMap) dataset and a waveform LIDAR dataset for characterization of different levels of intra-secondary forests stages at the Santa Rosa National Park (SRNP) Environmental Monitoring Super Site located in Costa Rica. Specifically, a multi-task learning based machine learning classifier (MLC-MTL) is employed on the first shortwave infrared (SWIR1) of HyMap in order to identify the variability of aboveground biomass of secondary TDFs along a successional gradient. Our paper recognizes that the process of ecological succession is not deterministic but a combination of transitional forests types along a stochastic path that depends on ecological, edaphic, land use, and micro-meteorological conditions, and our results provide a new way to obtain the spatial distribution of three main types of TDFs successional stages.

SOIL CO2 EFFLUX FROM ISOTOPICALLY LABELED BEECH AND SPRUCE IN SOUTHERN GERMANY

EPA Science Inventory

• Carbon acquisition and transport to roots in forest trees is difficult to quantify and is affected by a number of factors, including micrometeorology and anthropogenic stresses. The canopies of mature European beech (Fagus sylvatica) and Norway spruce (Picea abies) were expose...

DEVELOPMENTS AND APPLICATIONS OF CFD SIMULATIONS OF MICROMETEOROLOGY AND POLLUTION TRANSPORT IN SUPPORT OF AIR QUALITY MODELING

EPA Science Inventory

Development and application of computational fluid dynamics (CFD) simulations are being advanced through case studies for simulating air pollutant concentrations from sources within open fields and within complex urban building environments. CFD applications have been under deve...

Environmental monitoring network for India

Treesearch

P.V. Sundareshwar; R. Murtugudde; G. Srinivasan; S. Singh; K.J. Ramesh; R. Ramesh; S.B. Verma; D. Agarwal; D. Baldocchi; C.K. Baru; K.K. Baruah; G.R. Chowdhury; V.K. Dadhwal; C.B.S. Dutt; J. Fuentes; Prabhat Gupta; W.W. Hardgrove; M. Howard; C.S. Jha; S. Lal; W.K. Michener; A.P. Mitra; J.T. Morris; R.R. Myneni; M. Naja; R. Nemani; R. Purvaja; S. Raha; S.K. Santhana Vanan; M. Sharma; A. Subramaniam; R. Sukumar; R.R. Twilley; P.R. Zimmerman

2007-01-01

Understanding the consequences of global environmental change and its mitigation will require an integrated global effort of comprehensive long-term data collection, synthesis, and action (1). The last decade has seen a dramatic global increase in the number of networked monitoring sites. For example, FLUXNET is a global collection of >300 micrometeorological...

Micrometeorological and PBL experiments in Australia

NASA Astrophysics Data System (ADS)

Garratt, J. R.; Hicks, B. B.

1990-03-01

A brief summary is given of five main field experiments (or sets of expeditions) carried out in Australia in the last thirty years. The main objectives and results of each are described, and an indication is given of their impact on progress in our understanding of the planetary boundary layer (PBL).

Indirect determination of leaf area index to calculate evapotranspiration

USDA-ARS?s Scientific Manuscript database

The plant integrates soil and environmental factors. The purpose of this study was to use nadir photos from 4.9 m height to determine ground cover, leaf area index (LAI), and plant water use (along with micrometeorology measurements). Measurements were completed on plots comparing a four-year organi...

Pesticide spray application, behavior, and assessment: workshop proceedings

Treesearch

Richard B. Roberts

1976-01-01

Experts from relevant disciplines exchanged information on three important problems of pesticide spray technology. The four papers presented are Physical Parameters Relating to Pesticide Applications by N. B. Akesson and W. E. Yates; The Micrometeorology and Physics of Spray Particle Behavior by H. E. Cramer and D. G. Boyle;

A review of models and micrometeorological methods used to estimate wetland evapotranspiration

USGS Publications Warehouse

Drexler, J.Z.; Snyder, R.L.; Spano, D.; Paw, U.K.T.

2004-01-01

Within the past decade or so, the accuracy of evapotranspiration (ET) estimates has improved due to new and increasingly sophisticated methods. Yet despite a plethora of choices concerning methods, estimation of wetland ET remains insufficiently characterized due to the complexity of surface characteristics and the diversity of wetland types. In this review, we present models and micrometeorological methods that have been used to estimate wetland ET and discuss their suitability for particular wetland types. Hydrological, soil monitoring and lysimetric methods to determine ET are not discussed. Our review shows that, due to the variability and complexity of wetlands, there is no single approach that is the best for estimating wetland ET. Furthermore, there is no single foolproof method to obtain an accurate, independent measure of wetland ET. Because all of the methods reviewed, with the exception of eddy covariance and LIDAR, require measurements of net radiation (Rn) and soil heat flux (G), highly accurate measurements of these energy components are key to improving measurements of wetland ET. Many of the major methods used to determine ET can be applied successfully to wetlands of uniform vegetation and adequate fetch, however, certain caveats apply. For example, with accurate Rn and G data and small Bowen ratio (??) values, the Bowen ratio energy balance method can give accurate estimates of wetland ET. However, large errors in latent heat flux density can occur near sunrise and sunset when the Bowen ratio ?? ??? - 1??0. The eddy covariance method provides a direct measurement of latent heat flux density (??E) and sensible heat flux density (II), yet this method requires considerable expertise and expensive instrumentation to implement. A clear advantage of using the eddy covariance method is that ??E can be compared with Rn-G H, thereby allowing for an independent test of accuracy. The surface renewal method is inexpensive to replicate and, therefore, shows particular promise for characterizing variability in ET as a result of spatial heterogeneity. LIDAR is another method that has special utility in a heterogeneous wetland environment, because it provides an integrated value for ET from a surface. The main drawback of LIDAR is the high cost of equipment and the need for an independent ET measure to assess accuracy. If Rn and G are measured accurately, the Priestley-Taylor equation can be used successfully with site-specific calibration factors to estimate wetland ET. The 'crop' cover coefficient (Kc) method can provide accurate wetland ET estimates if calibrated for the environmental and climatic characteristics of a particular area. More complicated equations such as the Penman and Penman-Monteith equations also can be used to estimate wetland ET, but surface variability and lack of information on aerodynamic and surface resistances make use of such equations somewhat questionable. ?? 2004 John Wiley and Sons, Ltd.

Effects of sensor location and the atmospheric stability on the accuracy of an inverse-dispersion technique for lagoon gas emission measurements

USDA-ARS?s Scientific Manuscript database

Measuring gas emission rates from wastewater lagoons and storage ponds using currently available micrometeorological techniques can be an arduous task because typical lagoon environments contain a variety of obstructions (e.g., berm, trees, buildings) to wind flow. These non-homogeneous terrain cond...

USE OF RELAXED EDDY ACCUMULATION TO MEASURE BIOSPHERE-ATMOSPHERE EXCHANGE OF ISOPRENE AND OTHER BIOLOGICAL TRACE GASES

EPA Science Inventory

The micrometeorological flux measurement technique known as relaxed eddy accumulation (REA) holds promise as a powerful new tool for ecologists. The more popular eddy covariance (eddy correlation) technique requires the use of sensors that can respond at fast rates (10 Hz), and t...

Modeling the Atmospheric Dynamics within and Above Vegetation Layers

Treesearch

Warren E. Heilman; John Zasada

2000-01-01

A critical component of any silvicultural treatment is the creation of suitable microclimatic conditions for desired plant and animal species. One of the most useful tools for examining the microclimatic implications of different vegetation treatments is the use of atmospheric boundary-layer models that can simulate resulting micrometeorological conditions within and...

Rising ozone concentrations decrease soybean evapotranspiration and water use efficiency while increasing canopy temperature

USDA-ARS?s Scientific Manuscript database

We investigated the effects of increasing [O3] on soybean canopy scale fluxes of heat and water vapor as well as water use efficiency (WUE) at the Soybean Free Air Concentration Enrichment (SoyFACE) facility. Micrometeorological measurements were made to determine the net radiation (Rn) sensible hea...

Controls on interannual variation in evapotranspiration and water use efficiency in a mature, furrow-irrigated peach orchard

USDA-ARS?s Scientific Manuscript database

Evapotranspiration (ET) and water use efficiency (WUE) in peach orchards has previously been observed in young (less than 5-8 years old), drip irrigated orchards using micrometeorological techniques such as Eddy Covariance or large-weighing lysimeters. However, no work has been reported on ET and W...

Temperature regimes and turbulent heat fluxes across a heterogeneous canopy in an Alaskan boreal forest

USDA-ARS?s Scientific Manuscript database

We evaluate local differences in thermal regimes and turbulent heat fluxes across the heterogeneous canopy of a black spruce boreal forest on discontinuous permafrost in interior Alaska. The data was taken during an intensive observing period in the summer of 2013 from two micrometeorological tower...

Long-path measurements of pollutants and micrometeorology over Highway 401 in Toronto

NASA Astrophysics Data System (ADS)

You, Yuan; Staebler, Ralf M.; Moussa, Samar G.; Su, Yushan; Munoz, Tony; Stroud, Craig; Zhang, Junhua; Moran, Michael D.

2017-11-01

Traffic emissions contribute significantly to urban air pollution. Measurements were conducted over Highway 401 in Toronto, Canada, with a long-path Fourier transform infrared (FTIR) spectrometer combined with a suite of micrometeorological instruments to identify and quantify a range of air pollutants. Results were compared with simultaneous in situ observations at a roadside monitoring station, and with output from a special version of the operational Canadian air quality forecast model (GEM-MACH). Elevated mixing ratios of ammonia (0-23 ppb) were observed, of which 76 % were associated with traffic emissions. Hydrogen cyanide was identified at mixing ratios between 0 and 4 ppb. Using a simple dispersion model, an integrated emission factor of on average 2.6 g km-1 carbon monoxide was calculated for this defined section of Highway 401, which agreed well with estimates based on vehicular emission factors and observed traffic volumes. Based on the same dispersion calculations, vehicular average emission factors of 0.04, 0.36, and 0.15 g km-1 were calculated for ammonia, nitrogen oxide, and methanol, respectively.

Forward-Looking Infrared Cameras for Micrometeorological Applications within Vineyards

PubMed Central

Katurji, Marwan; Zawar-Reza, Peyman

2016-01-01

We apply the principles of atmospheric surface layer dynamics within a vineyard canopy to demonstrate the use of forward-looking infrared cameras measuring surface brightness temperature (spectrum bandwidth of 7.5 to 14 μm) at a relatively high temporal rate of 10 s. The temporal surface brightness signal over a few hours of the stable nighttime boundary layer, intermittently interrupted by periods of turbulent heat flux surges, was shown to be related to the observed meteorological measurements by an in situ eddy-covariance system, and reflected the above-canopy wind variability. The infrared raster images were collected and the resultant self-organized spatial cluster provided the meteorological context when compared to in situ data. The spatial brightness temperature pattern was explained in terms of the presence or absence of nighttime cloud cover and down-welling of long-wave radiation and the canopy turbulent heat flux. Time sequential thermography as demonstrated in this research provides positive evidence behind the application of thermal infrared cameras in the domain of micrometeorology, and to enhance our spatial understanding of turbulent eddy interactions with the surface. PMID:27649208

The CzeCOS Network

NASA Astrophysics Data System (ADS)

Havránková, Kateřina; Taufarová, Klára; Šigut, Ladislav; McGloin, Ryan; Acosta, Manuel; Dušek, Jiří; Krupková, Lenka; Macálková-Mžourková, Lenka; Pavelka, Marian; Dařenová, Eva; Yadav, Shilpi; Nguyen, Vinh; Guerra, Carlos; Janous, Dalibor; Marek, Michal V.

2017-04-01

The Global Change Research Institute of the Czech Academy of Sciences (CzechGlobe) have established a well-equipped network of ecosystem stations, with modern instrumentation for eco-physiological, plant physiological and micrometeorological studies, and estimation of GHG emissions. The network of stations (CzeCOS) covers the main terrestrial ecosystems of the Czech Republic (young and old coniferous forest, deciduous forest, mixed floodplain forest, grassland, wetland and cropland). The ecosystem stations are equipped with eddy covariance systems, soil and stem chamber systems for CO2 efflux and instruments for making micrometeorological measurements. The network enables detailed research to be conducted on topics such as: the carbon balance of different ecosystems, energy balance closure, the impact of current climate conditions on production and ecosystem disturbances during extreme weather conditions (drought, floods, winter storms, etc.) at regional, national and international scales. As a part of global networks (Fluxnet, ANAEe, ICOS), CzeCOS participates in evaluating and predicting environmental change and helps in the proposal of mitigation measures. Another important issue studied at some of the CzeCOS sites is the use of the eddy covariance method in sloping terrain in order to improve eddy covariance data processing for sites in this kind of terrain. Here we show specific results from the sites and outline the importance of the regional/national network for improving our knowledge about the exchange of matter and energy fluxes at different ecosystems. This study was supported by the Ministry of Education, Youth and Sports of CR within the National Sustainability Program I (NPU I), grant number LO1415 and LD 15040. Computational resources were provided by the CESNET LM2015042 and the CERIT Scientific Cloud LM2015085, provided under the programme "Projects of Large Research, Development, and Innovations Infrastructures".

Micrometeorological simulations to predict the impacts of heat mitigation strategies on pedestrian thermal comfort in a Los Angeles neighborhood

NASA Astrophysics Data System (ADS)

Taleghani, Mohammad; Sailor, David; Ban-Weiss, George A.

2016-02-01

The urban heat island impacts the thermal comfort of pedestrians in cities. In this paper, the effects of four heat mitigation strategies on micrometeorology and the thermal comfort of pedestrians were simulated for a neighborhood in eastern Los Angeles County. The strategies investigated include solar reflective ‘cool roofs’, vegetative ‘green roofs’, solar reflective ‘cool pavements’, and increased street-level trees. A series of micrometeorological simulations for an extreme heat day were carried out assuming widespread adoption of each mitigation strategy. Comparing each simulation to the control simulation assuming current land cover for the neighborhood showed that additional street-trees and cool pavements reduced 1.5 m air temperature, while cool and green roofs mostly provided cooling at heights above pedestrian level. However, cool pavements increased reflected sunlight from the ground to pedestrians at a set of unshaded receptor locations. This reflected radiation intensified the mean radiant temperature and consequently increased physiological equivalent temperature (PET) by 2.2 °C during the day, reducing the thermal comfort of pedestrians. At another set of receptor locations that were on average 5 m from roadways and underneath preexisting tree cover, cool pavements caused significant reductions in surface air temperatures and small changes in mean radiant temperature during the day, leading to decreases in PET of 1.1 °C, and consequent improvements in thermal comfort. For improving thermal comfort of pedestrians during the afternoon in unshaded locations, adding street trees was found to be the most effective strategy. However, afternoon thermal comfort improvements in already shaded locations adjacent to streets were most significant for cool pavements. Green and cool roofs showed the lowest impact on the thermal comfort of pedestrians since they modify the energy balance at roof level, above the height of pedestrians.

Dai-Kou type conjugate gradient methods with a line search only using gradient.

PubMed

Huang, Yuanyuan; Liu, Changhe

2017-01-01

In this paper, the Dai-Kou type conjugate gradient methods are developed to solve the optimality condition of an unconstrained optimization, they only utilize gradient information and have broader application scope. Under suitable conditions, the developed methods are globally convergent. Numerical tests and comparisons with the PRP+ conjugate gradient method only using gradient show that the methods are efficient.

Transpirational water use and its regulation in the mountainous terrain of S. Korea

NASA Astrophysics Data System (ADS)

Otieno Dennis, O.; Eunyoung, J.; Sinkyu, K.; Tenhunen, J. D.

2009-12-01

Quantifying water use by forests growing on complex mountainous terrain is difficult and understanding of controls on water use by these forests a challenge. Yet mountains are crucial as water towers and better understanding of their hydrology and ecology is critical for sustainable management. Consequently, there is a growing need for new research approaches designed with attention to the particular needs and constraints of large-scale studies and that have the potential to generate reliable and accurate data. The use of a combination of different sapflow-measurement techniques provides a unique opportunity to monitor water use by the understory and canopy forest tree species at micro-scale, allowing for accurate estimation of total forest water use. The obtained data, in conjunction with intensively measured climatic variables, allow for better understanding and interpretation of transpiration results. A research initiative under the International Training Group: Complex Terrain and Ecological Heterogeneity (TERRECO) seeks to address pertinent issues related to forest water use and production in complex terrain. Stem Heat balance (SHB) and Heat Dissipation techniques have been employed to measure sapflow in the understory woody plants and tree branches and on stems of canopy trees respectively. Measurements have been stratified to account for differences in tree sizes and species diversity. To better understand the data, we are intensively monitoring soil moisture at 5, 10 and 30 cm depths, in addition to a range of micrometeorology sensors that have been set up below, within and above the canopy. These measurements have been planned, taking into account altitudinal/elevation gradient, aspect and within site differences in species composition and tree sizes and to generate data for large-scale modeling of the entire catchment. A total of 70 trees from 9 species growing in six different locations at varying elevations and aspects are being monitored. Peak daily water use by trees during mid summer amounts to 45 kg d-1 but varies significantly with sapwood area. Within a species, there is a consistent relationship between tree size (DBH) and sapwood area irrespective of elevation. We have also established a common trend in the relationship between wood density and sap flux density (Js) that transcends the boundaries of species differences. These initial findings are critical for our planned upscaling of water use by the forest catchment. In addition to soil moisture, vapor pressure deficit (VPD) and light play a crucial regulatory role on forest water use. We are at the stage of establishing a common link that brings together micrometeorology and transpiration that will allow for large scale modeling of forest water use.

Integrating local urban climate modelling and mobile sensor data for personal exposure assessments in the context of urban heat island effect

NASA Astrophysics Data System (ADS)

Ueberham, Maximilian; Hertel, Daniel; Schlink, Uwe

2017-04-01

Deeper knowledge about urban climate conditions is getting more important in the context of climate change, urban population growth, urban compaction and continued surface sealing. Especially the urban heat island effect (UHI) is one of the most significant human induced alterations of Earth's surface climate. According to this the appearance frequency of heat waves in cities will increase with deep impacts on personal thermal comfort, human health and local residential quality of citizens. UHI can be very heterogenic within a city and research needs to focus more on the neighborhood scale perspective to get further insights about the heat burden of individuals. However, up to now, few is known about local thermal environmental variances and personal exposure loads. To monitor these processes and the impact on individuals, improved monitoring approaches are crucial, complementing data recorded at conventional fixed stations. Therefore we emphasize the importance of micro-meteorological modelling and mobile measurements to shed new light on the nexus of urban human-climate interactions. Contributing to this research we jointly present the approaches of our two PhD-projects. Firstly we illustrate on the basis of an example site, how local thermal conditions in an urban district can be simulated and predicted by a micro-meteorological model. Secondly we highlight the potentials of personal exposure measurements based on an evaluation of mobile micro-sensing devices (MSDs) and analyze and explain differences between model predictions and mobile records. For the examination of local thermal conditions we calculated ENVI-met simulations within the "Bayerischer Bahnhof" quarter in Leipzig (Saxony, Germany; 51°20', 12°22'). To accomplish the maximum temperature contrasts within the diverse built-up structures we chose a hot summer day (25 Aug 2016) under autochthonous weather conditions. From these simulations we analyzed a UHI effect between the model core (urban area) and the surrounding nesting area (rural area). Preparing for the outdoor application of mobile MSDs we tested their accuracy and performance between several MSDs and reliable sophisticated devices under laboratory conditions. We found that variations mainly depend on the device design and technology (e.g. active/passive ventilation). The standard deviation of the temperature records was quite stable over the whole range of values and the MSDs proved to be applicable for the purpose of our study. In conclusion the benefit of integrating mobile data and micrometeorological predictions is manifold. Mobile data can be used for the investigation of personal exposure in the context of heat stress and for the verification and training of micrometeorological models. Otherwise, model predictions can identify local areas of special climate interest where additional mobile measurements would be beneficial to provide new information for mitigation and adaptation actions.

The Role of Evapotranspiration on Soil Moisture Depletion in a Small Alaskan Subarctic Farm

NASA Astrophysics Data System (ADS)

Ruairuen, W.; Fochesatto, G. J.; Sparrow, E. B.; Schnabel, W.; Zhang, M.

2013-12-01

At high latitudes the period for agriculture production is very short (110 frost-free days) and strongly depends on the availability of soil water content for vegetables to grow. In this context the evapotranspiration (ET) cycle is key variable underpinning mass and energy balance modulating therefore moisture gradients and soil dryness. Evapotranspiration (ET) from field-grown crops water stress is virtually unknown in the subarctic region. Understanding ET cycles in high latitude agricultural ecosystem is essential in terms of water management and sustainability and projection of agricultural activity. To investigate the ET cycle in farming soils a field experiment was conducted in the summer of 2012 and 2013 at the University of Alaska Fairbanks Agricultural and Forestry Experiment Station combining micrometeorological and hydrological measurements. In this case experimental plots of lettuce (Lactuca sativa) plants were grown. The experiment evaluated several components of the ET cycle such as actual evapotranspiration, reference evaporation, pan evaporation as well as soil water content and temperature profiles to link them to the vegetable growing functions. We investigated the relationship of soil moisture content and crop water use across the growing season as a function of the ET cycle. Soil water depletion was compared to daily estimates of water loss by ET during dry and wet periods. We also investigated the dependence of ET on the atmospheric boundary layer flow patterns set by the synoptic large scale weather patterns.

1 Reevaluation of the integrated horizontal flux approach

NASA Astrophysics Data System (ADS)

Neftel, Albrecht; Häni, Christoph; Hensen, Arjan

2017-04-01

The integrated horizontal flux (IHF) method is a simplified mass balance approach frequently used to determine emissions from confined source areas, e.g. NH3 emissions from slurry spread to a circular plot (Denmead, 2008). With a mast in the center of the circle with radius R, the total flux F of the upwind emitted NH3 is approximated from the measured vertical (z) profiles of concentration (c) and horizontal wind speed (u) as (Denmead 1983): F = 1/R\\intz=zplz=0\\overline{u(c - cbgd)}dz where cbgd is the ``background'' concentration upwind of the emitting area and zpl is the maximum height of the emission plume (where the concentration c equals cbgd).The IHF method is a robust approach, as it is independent of surface characteristics and the state of atmospheric diffusion (Denmead, 2008; Laubach,2010). Ryden and McNeill (1984) published guidelines on how to evaluate IHF measurements, which have been used in many investigations that followed. In the following we analyze systematic biases that might occur by applying different recipes to both modelled concentration profiles as well as measured profiles from a recent field experiment in the Netherlands. Typical differencs using the approach by Ryden et al. (1984) are in the order +10% to +30% compared to the reference values from the model or alternative determination of the emissions based on the experimental values. The positive biases consist of several contributions: horizontal diffusion, logarithmic fit of the concentration profile, displacement height. References Denmead, O. T., 1983. Micrometeorological methods for measuring gaseous losses of nitrogen in the field. In: Gaseous Loss of Nitrogen from Plum-Soil Systems (Freney, J. R.; Simpson, J. R., Eds) Martinus Nijhof/Dr W. Junk, The Hague, pp. 133-157. Denmead, O. T., 2008. Approaches to measuring fluxes of methane and nitrous oxide between landscapes and the atmosphere. Plant Soil 309 (1-2), 5a\\euro 24.Laubach, J., 2010. Testing of a lagrangian model of dispersion in the surface layer with cattle methane emissions. Agr. Forest Meteorol. 150 (11), 1428a \\euro 1442.Ryden, J., McNeill, J., 1984. Application of the Micrometeorological Mass Balance Method to the Determination of Ammonia Loss from a Grazed Sward. J. Sci. Food Agricult. 35 (12), 1297a\\euro 1310.

On the Convergence Analysis of the Optimized Gradient Method.

PubMed

Kim, Donghwan; Fessler, Jeffrey A

2017-01-01

This paper considers the problem of unconstrained minimization of smooth convex functions having Lipschitz continuous gradients with known Lipschitz constant. We recently proposed the optimized gradient method for this problem and showed that it has a worst-case convergence bound for the cost function decrease that is twice as small as that of Nesterov's fast gradient method, yet has a similarly efficient practical implementation. Drori showed recently that the optimized gradient method has optimal complexity for the cost function decrease over the general class of first-order methods. This optimality makes it important to study fully the convergence properties of the optimized gradient method. The previous worst-case convergence bound for the optimized gradient method was derived for only the last iterate of a secondary sequence. This paper provides an analytic convergence bound for the primary sequence generated by the optimized gradient method. We then discuss additional convergence properties of the optimized gradient method, including the interesting fact that the optimized gradient method has two types of worstcase functions: a piecewise affine-quadratic function and a quadratic function. These results help complete the theory of an optimal first-order method for smooth convex minimization.

On the Convergence Analysis of the Optimized Gradient Method

PubMed Central

Kim, Donghwan; Fessler, Jeffrey A.

2016-01-01

This paper considers the problem of unconstrained minimization of smooth convex functions having Lipschitz continuous gradients with known Lipschitz constant. We recently proposed the optimized gradient method for this problem and showed that it has a worst-case convergence bound for the cost function decrease that is twice as small as that of Nesterov’s fast gradient method, yet has a similarly efficient practical implementation. Drori showed recently that the optimized gradient method has optimal complexity for the cost function decrease over the general class of first-order methods. This optimality makes it important to study fully the convergence properties of the optimized gradient method. The previous worst-case convergence bound for the optimized gradient method was derived for only the last iterate of a secondary sequence. This paper provides an analytic convergence bound for the primary sequence generated by the optimized gradient method. We then discuss additional convergence properties of the optimized gradient method, including the interesting fact that the optimized gradient method has two types of worstcase functions: a piecewise affine-quadratic function and a quadratic function. These results help complete the theory of an optimal first-order method for smooth convex minimization. PMID:28461707

On the spatial heterogeneity of net ecosystem productivity in complex landscapes

Treesearch

Ryan E. Emanuel; Diego A. Riveros-Iregui; Brian L. McGlynn; Howard E. Epstein

2011-01-01

Micrometeorological flux towers provide spatially integrated estimates of net ecosystem production (NEP) of carbon over areas ranging from several hectares to several square kilometers, but they do so at the expense of spatially explicit information within the footprint of the tower. This finer-scale information is crucial for understanding how physical and biological...

Measuring trace gas emission from multi-distributed sources using vertical radial plume mapping (VRPM) and backward Lagrangian stochastic (bLS) techniques

USDA-ARS?s Scientific Manuscript database

Two micrometeorological techniques for measuring trace gas emission rates from distributed area sources were evaluated using a variety of synthetic area sources. The accuracy of the vertical radial plume mapping (VRPM) and the backward Lagrangian (bLS) techniques with an open-path optical spectrosco...

Surface air temperature in a maritime metropolitan region

Treesearch

J. D. McTaggart-Cowen; J. W. S. Young

1977-01-01

In investigations of the micrometeorology of any area, one of the basic parameters required is the spatial and temporal distribution of the surface air temperature. A mobile instrument mounted on an automobile was used for measuring temperatures within the surface mixed layer. Details are presented of a case study at Saint John, New Brunswick, in a summer period. The...

Carbon fluxes, evapotranspiration, and water use efficiency of terrestrial ecosystems in China

Treesearch

Jingfeng Xiao; Ge Sun; Jiquan Chen; Hui Chen; Shiping Chen; Gang Dong

2013-01-01

The magnitude, spatial patterns, and controlling factors of the carbon and water fluxes of terrestrial ecosystems in China are not well understood due to the lack of ecosystem-level flux observations. We synthesized flux and micrometeorological observations from 22 eddy covariance flux sites across China,and examined the carbon fluxes, evapotranspiration (ET), and...

Modeling coupled interactions of carbon, water, and ozone exchange between terrestrial ecosystems and the atmosphere

Treesearch

Ned Nikolova; Karl F. Zeller

2003-01-01

A new biophysical model (FORFLUX) is presented to study the simultaneous exchange of ozone, carbon dioxide, and water vapor between terrestrial ecosystems and the atmosphere. The model mechanistically couples all major processes controlling ecosystem flows trace gases and water implementing recent concepts in plant eco-physiology, micrometeorology, and soil hydrology....

Reflections on the surface energy imbalance problem

Treesearch

Ray Leuning; Eva van Gorsela; William J. Massman; Peter R. Isaac

2012-01-01

The 'energy imbalance problem' in micrometeorology arises because at most flux measurement sites the sum of eddy fluxes of sensible and latent heat (H + λE) is less than the available energy (A). Either eddy fluxes are underestimated or A is overestimated. Reasons for the imbalance are: (1) a failure to satisfy the fundamental assumption of one-...

A project summary: Water and energy budget assessment for a non-tidal wetland in the Sacramento-San Joaquin delta

USGS Publications Warehouse

Anderson, Frank E.; Snyder, R.L.; Paw, U.K.T.; Drexler, Judith Z.

2004-01-01

The methods used to obtain universal cover coefficient (Kc) values for a non-tidal restored wetland in the Sacramento-San Joaquin river delta, US, during the summer of the year 2002 and to investigate possible differences during changing wind patterns are described. A micrometeorological tower over the wetland was established to quantify actual evapotranspiration (ETa) rates and surface energy fluxes for water and energy budget analysis. The eddy-covariance (EC) system was used to measure the surface energy budget data in the period from May 23 to November 6, 2002. The results show that K c values should be lower during westerly than northerly wind events during the midseason period due to the reduced vapor pressure deficit.

An empirical inferential method of estimating nitrogen deposition to Mediterranean-type ecosystems: the San Bernardino Mountains case study.

PubMed

Bytnerowicz, A; Johnson, R F; Zhang, L; Jenerette, G D; Fenn, M E; Schilling, S L; Gonzalez-Fernandez, I

2015-08-01

The empirical inferential method (EIM) allows for spatially and temporally-dense estimates of atmospheric nitrogen (N) deposition to Mediterranean ecosystems. This method, set within a GIS platform, is based on ambient concentrations of NH3, NO, NO2 and HNO3; surface conductance of NH4(+) and NO3(-); stomatal conductance of NH3, NO, NO2 and HNO3; and satellite-derived LAI. Estimated deposition is based on data collected during 2002-2006 in the San Bernardino Mountains (SBM) of southern California. Approximately 2/3 of dry N deposition was to plant surfaces and 1/3 as stomatal uptake. Summer-season N deposition ranged from <3 kg ha(-1) in the eastern SBM to ∼ 60 kg ha(-1) in the western SBM near the Los Angeles Basin and compared well with the throughfall and big-leaf micrometeorological inferential methods. Extrapolating summertime N deposition estimates to annual values showed large areas of the SBM exceeding critical loads for nutrient N in chaparral and mixed conifer forests. Published by Elsevier Ltd.

Large Airborne Full Tensor Gradient Data Inversion Based on a Non-Monotone Gradient Method

NASA Astrophysics Data System (ADS)

Sun, Yong; Meng, Zhaohai; Li, Fengting

2018-03-01

Following the development of gravity gradiometer instrument technology, the full tensor gravity (FTG) data can be acquired on airborne and marine platforms. Large-scale geophysical data can be obtained using these methods, making such data sets a number of the "big data" category. Therefore, a fast and effective inversion method is developed to solve the large-scale FTG data inversion problem. Many algorithms are available to accelerate the FTG data inversion, such as conjugate gradient method. However, the conventional conjugate gradient method takes a long time to complete data processing. Thus, a fast and effective iterative algorithm is necessary to improve the utilization of FTG data. Generally, inversion processing is formulated by incorporating regularizing constraints, followed by the introduction of a non-monotone gradient-descent method to accelerate the convergence rate of FTG data inversion. Compared with the conventional gradient method, the steepest descent gradient algorithm, and the conjugate gradient algorithm, there are clear advantages of the non-monotone iterative gradient-descent algorithm. Simulated and field FTG data were applied to show the application value of this new fast inversion method.

Thermal Vegetation Canopy Model Studies.

DTIC Science & Technology

1981-08-01

optical and thermal canopy radiation models, and the interpretation of these measurements. Previous technical re- ports in this series have described...The initial guess is taken to be air temperature; thus, the solution approach may be interpreted as determining the modification to the air...provided assistance for interpreting the micrometeorological data. In addition, Dr. L. W. Gay of the School of Renewable Natural Resources, Arizona

Fire weather conditions and fire-atmosphere interactions observed during low-intensity prescribed fires - RxCADRE 2012

Treesearch

Craig B. Clements; Neil P. Lareau; Daisuke Seto; Jonathan Contezac; Braniff Davis; Casey Teske; Thomas J. Zajkowski; Andrew T. Hudak; Benjamin C. Bright; Matthew B. Dickinson; Bret W. Butler; Daniel Jimenez; J. Kevin Hiers

2016-01-01

The role of fire-atmosphere coupling on fire behaviour is not well established, and to date few field observations have been made to investigate the interactions between fire spread and fire-induced winds. Therefore, comprehensive field observations are needed to better understand micrometeorological aspects of fire spread. To address this need, meteorological...

AICE Survey of USSR Air Pollution Literature, Volume 13: Technical Papers from the Leningrad International Symposium on the Meteorological Aspects of Atmospheric Pollution, Part 2.

ERIC Educational Resources Information Center

Nuttonson, M. Y., Ed.

Twelve papers were translated from Russian: Automation of Information Processing Involved in Experimental Studies of Atmospheric Diffusion, Micrometeorological Characteristics of Atmospheric Pollution Conditions, Study of theInfluence of Irregularities of the Earth's Surface on the Air Flow Characteristics in a Wind Tunnel, Use of Parameters of…

AmeriFlux US-Los Lost Creek

DOE Data Explorer

Desai, Ankur [University of Wisconsin

2016-01-01

This is the AmeriFlux version of the carbon flux data for the site US-Los Lost Creek. Site Description - Shrub wetland site, chosen to be representative of the wetlands within the WLEF tall tower flux footprint. This is a deciduous shrub wetland. Coniferous and grassy stands also exist within the WLEF flux footprint. Solar power. The site has excellent micrometeorological characteristics.

Overview of the 2013 FireFlux II grass fire field experiment

Treesearch

C.B. Clements; B. Davis; D. Seto; J. Contezac; A. Kochanski; J.-B. Fillipi; N. Lareau; B. Barboni; B. Butler; S. Krueger; R. Ottmar; R. Vihnanek; W.E. Heilman; J. Flynn; M.A. Jenkins; J. Mandel; C. Teske; D. Jimenez; J. O' Brien; B. Lefer

2014-01-01

In order to better understand the dynamics of fire-atmosphere interactions and the role of micrometeorology on fire behaviour the FireFlux campaign was conducted in 2006 on a coastal tall-grass prairie in southeast Texas, USA. The FireFlux campaign dataset has become the international standard for evaluating coupled fire-atmosphere model systems. While FireFlux is one...

Calculating the micrometeorological influences on the speed of sound through the atmosphere in forests.

PubMed

Tunick, Arnold

2003-10-01

A key element in determining point-to-point acoustic transmission within and above forests is modeling the variation (with height above ground) of the effective speed of sound. Effective speed of sound is readily derived from estimates of air temperature, relative humidity, and wind velocity. However, meteorological models for the forest canopy vary from comparatively simple to academically complex, requiring different amounts and numbers of inputs and computer capabilities. In addition, not all canopy profile models are suitable for acoustic applications. In this paper, a meteorological computer model for the forest canopy is developed to derive continuous profiles of effective sound speed from the ground to 3 h, where h is the height of the canopy. In turn, these profiles are used to make some initial approximations of short-range acoustic transmission loss through a uniform forest stand for typical clear sky, midday atmospheric conditions. Also, a radiative transfer and energy budget algorithm is incorporated into the model to obtain the appropriate heat source profile for any time of day. Thus, physics-based micrometeorology is coupled to acoustics for future applications of acoustic information in forest environments.

A penalized linear and nonlinear combined conjugate gradient method for the reconstruction of fluorescence molecular tomography.

PubMed

Shang, Shang; Bai, Jing; Song, Xiaolei; Wang, Hongkai; Lau, Jaclyn

2007-01-01

Conjugate gradient method is verified to be efficient for nonlinear optimization problems of large-dimension data. In this paper, a penalized linear and nonlinear combined conjugate gradient method for the reconstruction of fluorescence molecular tomography (FMT) is presented. The algorithm combines the linear conjugate gradient method and the nonlinear conjugate gradient method together based on a restart strategy, in order to take advantage of the two kinds of conjugate gradient methods and compensate for the disadvantages. A quadratic penalty method is adopted to gain a nonnegative constraint and reduce the illposedness of the problem. Simulation studies show that the presented algorithm is accurate, stable, and fast. It has a better performance than the conventional conjugate gradient-based reconstruction algorithms. It offers an effective approach to reconstruct fluorochrome information for FMT.

Modified conjugate gradient method for diagonalizing large matrices.

PubMed

Jie, Quanlin; Liu, Dunhuan

2003-11-01

We present an iterative method to diagonalize large matrices. The basic idea is the same as the conjugate gradient (CG) method, i.e, minimizing the Rayleigh quotient via its gradient and avoiding reintroducing errors to the directions of previous gradients. Each iteration step is to find lowest eigenvector of the matrix in a subspace spanned by the current trial vector and the corresponding gradient of the Rayleigh quotient, as well as some previous trial vectors. The gradient, together with the previous trial vectors, play a similar role as the conjugate gradient of the original CG algorithm. Our numeric tests indicate that this method converges significantly faster than the original CG method. And the computational cost of one iteration step is about the same as the original CG method. It is suitable for first principle calculations.

A Bayesian model to correct underestimated 3-D wind speeds from sonic anemometers increases turbulent components of the surface energy balance

Treesearch

John M. Frank; William J. Massman; Brent E. Ewers

2016-01-01

Sonic anemometers are the principal instruments in micrometeorological studies of turbulence and ecosystem fluxes. Common designs underestimate vertical wind measurements because they lack a correction for transducer shadowing, with no consensus on a suitable correction. We reanalyze a subset of data collected during field experiments in 2011 and 2013 featuring two or...

A perspective on thirty years of the Webb, Pearman and Leuning density corrections

Treesearch

Xuhui Lee; William J. Massman

2011-01-01

The density correction theory of Webb et al. (1980, Q J Roy Meteorol Soc 106: 85-100, hereafter WPL) is a principle underpinning the experimental investigation of surface fluxes of energy and masses in the atmospheric boundary layer. It has a long-lasting influence in boundary-layer meteorology and micrometeorology, and the year 2010 marks the 30th anniversary of the...

Momentum-weighted conjugate gradient descent algorithm for gradient coil optimization.

PubMed

Lu, Hanbing; Jesmanowicz, Andrzej; Li, Shi-Jiang; Hyde, James S

2004-01-01

MRI gradient coil design is a type of nonlinear constrained optimization. A practical problem in transverse gradient coil design using the conjugate gradient descent (CGD) method is that wire elements move at different rates along orthogonal directions (r, phi, z), and tend to cross, breaking the constraints. A momentum-weighted conjugate gradient descent (MW-CGD) method is presented to overcome this problem. This method takes advantage of the efficiency of the CGD method combined with momentum weighting, which is also an intrinsic property of the Levenberg-Marquardt algorithm, to adjust step sizes along the three orthogonal directions. A water-cooled, 12.8 cm inner diameter, three axis torque-balanced gradient coil for rat imaging was developed based on this method, with an efficiency of 2.13, 2.08, and 4.12 mT.m(-1).A(-1) along X, Y, and Z, respectively. Experimental data demonstrate that this method can improve efficiency by 40% and field uniformity by 27%. This method has also been applied to the design of a gradient coil for the human brain, employing remote current return paths. The benefits of this design include improved gradient field uniformity and efficiency, with a shorter length than gradient coil designs using coaxial return paths. Copyright 2003 Wiley-Liss, Inc.

Study of surface energy budget and test of a newly developed fast photoacoustic spectroscopy based hygrometer in field campaign Szeged (Hungary)

NASA Astrophysics Data System (ADS)

Tatrai, David; Nikov, Daniella; Zsolt Jász, Ervin; Bozóki, Zoltán; Szabó, Gábor; Weidinger, Tamás; András Gyöngyösi, Zénó; Kiss, Melinda; Józsa, János; Simó Diego, Gemma; Cuxart Rodamilans, Joan; Wrenger, Burkhart; Bottyán, Zsolt

2014-05-01

A micrometeorological field measurement campaign dedicated to study the surface energy budget and the structure of the boundary layer focusing on the transient layer forming periods during night-time was organized in the period of 10th of November to 3rd of December 2013 in the nearby of Szeged, Hungary. A temporary micrometeorological measurement station was set up at the coordinates N:46.239943; E:20.089758, approximately 1700 m far from a national meteorology station (N:46.255711; E:20.09052). In the experimental micrometeorological site different types of instruments were installed to measure numerous parameters: standard meteorological measurements (p, T, wet, wind speed and direction at three different levels, relative humidity at two levels and absolute humidity at one level) radiation budget components surface temperature and leaf wetness soil temperature, moisture and heat flux into the deeper soil layer eddy-covariance measurements (t, H, LE CO2) at 3 m level using Campbell open-path IRGA (EC150) system. At the national meteorology station (http://adatok.geo.u-szeged.hu/?lang=eng) besides their standard measurement equipment and measurement routine a SODAR was installed and continuously operated. These ground based measurements were combined with and supported by UAV, quadcopter and tethered balloon based vertical profile measurements of p, T, rh. For this measurement campaign as a modification of a previously developed airborne ready dual channel hygrometer, a fast photoacoustic spectroscopy based hygrometer was developed for absolute humidity measurements. The estimated response time of the system is faster than 15 Hz, which was achieved by the replacement of the data acquisition system and by recording the raw photoacoustic signal sampled at rate of 48 kHz for post-processing. During the campaign this new system was compared to a TDL system commercially available at Li-COR Inc. Besides the testing of the newly developed fast photoacoustic hygrometer the main goal of the present study is the determination of the total energy budget and the accuracy of its closure. Results and consequences of the measurements will be presented.

Determination of the isotopic composition of evapotranspiration in a mature oil palm plantation in Jambi province, Indonesia.

NASA Astrophysics Data System (ADS)

Bonazza, Mattia; Meijide, Ana; Knohl, Alexander

2017-04-01

Evapotranspiration (ET) is defined as the sum of the water vapor fluxes from evaporation (E) and transpiration (T). The relative proportion between these two quantities depends on the species, on their age and on the structure of the stand and canopy. Evaporation represents the fraction of water that doesn't contribute to plants growth hence it often considered as "unused" water by the plants root system. For this reason, in a fast changing environment like Indonesia where, since almost 30 years, tropical rainforests are gradually converted into extensive oil palm plantation, it is important to quantify the amount of evaporated water to improve agricultural practices and water quality. As powerful tracers of the hydrological cycle, water stable isotopes represent an important tool to estimate the isotopic composition of the evapotranspiration flux and they can be used as a starting point for the determination of the T/ET ratio, which can be considered as a plant water uptake efficiency indicator. The isotopic composition (δDvand δ18Ov) and the mixing ratio (qv) of water vapor measured in a stand is the result of the isotopic mixing between two members; ecosystem evapotranspiration (δET) and background air (δa). With the implementation of laser-based isotopic analysers we are now able to improve the measurement frequency of δDvand δ18Ov that leads us to an improved estimation of δET. Here we present the results of a measurement campaign, performed with a Picarro L-2120i and conducted in a mature oil palm plantation in the province of Jambi, Indonesia. We measured the atmospheric water vapor mixing ratio and isotopic composition at 5 sampling heights (21 m, 16 m, 9 m, 3.5 and 0.3 m) along a flux tower throughout the oil palm canopy (average height 10 m). The range of the water vapor isotopic composition was between -19 and -11 and -134 and -82 ‰ for δ18Ov and δDvrespectively. A fairly open canopy structure resulted in small mixing ratio gradients along the vertical profile. We collected and analysed all rain event and estimated the variability of the water vapor isotopic composition. Micrometeorological measurements, provided by the tower's sensors, were used to calculate ET using the Bowen ratio energy balance. To determine the isotopic composition of the evapotranspiration flux we used and compared two different methods: Keeling plot and flux gradient approach.

Assessing ecosystem response to multiple disturbances and climate change in South Africa using ground- and satellite-based measurements and model

NASA Astrophysics Data System (ADS)

Kutsch, W. L.; Falge, E. M.; Brümmer, C.; Mukwashi, K.; Schmullius, C.; Hüttich, C.; Odipo, V.; Scholes, R. J.; Mudau, A.; Midgley, G.; Stevens, N.; Hickler, T.; Scheiter, S.; Martens, C.; Twine, W.; Iiyambo, T.; Bradshaw, K.; Lück, W.; Lenfers, U.; Thiel-Clemen, T.; du Toit, J.

2015-12-01

Sub-Saharan Africa currently experiences rapidly growing human population, intrinsically tied to substantial changes in land use on shrubland, savanna and mixed woodland ecosystems due to over-exploitation. Significant conversions driving degradation, affecting fire frequency and water availability, and fueling climate change are expected to increase in the immediate future. However, measured data of greenhouse gas emissions as affected by land use change are scarce to entirely lacking from this region. The project 'Adaptive Resilience of Southern African Ecosystems' (ARS AfricaE) conducts research and develops scenarios of ecosystem development under climate change, for management support in conservation or for planning rural area development. This will be achieved by (1) creation of a network of research clusters (paired sites with natural and altered vegetation) along an aridity gradient in South Africa for ground-based micrometeorological in-situ measurements of energy and matter fluxes, (2) linking biogeochemical functions with ecosystem structure, and eco-physiological properties, (3) description of ecosystem disturbance (and recovery) in terms of ecosystem function such as carbon balance components and water use efficiency, (4) set-up of individual-based models to predict ecosystem dynamics under (post) disturbance managements, (5) combination with long-term landscape dynamic information derived from remote sensing and aerial photography, and (6) development of sustainable management strategies for disturbed ecosystems and land use change. Emphasis is given on validation (by a suite of field measurements) of estimates obtained from eddy covariance, model approaches and satellite derivations.

Role of advection for the ecosystem-atmosphere CO2 exchange of alpine grasslands

NASA Astrophysics Data System (ADS)

Zhao, Peng; Wohlfahrt, Georg

2017-04-01

The neglect of the advection contribution could bring uncertainties to the estimation of the net ecosystem CO2 exchange (NEE) between ecosystems and the atmosphere, especially in complex terrain and stable atmospheric conditions. In order to quantify the advection flux of CO2, we carried out four monthly field campaigns at different grasslands in the mountainous areas of Italy, Austria, and Germany in 2015 and 2016. The measurement was based on the advection completed mass balance (ACMB) concept. A home-assembled solenoid valve system, together with multiple sampling inlets and a gas analyser, was used to measure CO2 concentration online at three heights on the four sides of a control volume of 20 m by 20 m. Advection of CO2 was then calculated from the measurement of wind components and CO2 gradients. The turbulent flux of CO2 was measured by the eddy-covariance technique. Three clear automatic chambers measured NEE as reference. Results showed that both the horizontal and vertical advection contributed more significantly to CO2 flux at night time than at daytime. At most sites, the horizontal advection played a more important role than the vertical advection. The above-canopy advection contributed more CO2 flux than within-canopy advection due to the short canopy heights. Large variability of NEE measured by the three chambers indicates the challenge of comparing chamber and micrometeorological fluxes resulting from the heterogeneity of the surface.

Temporal dynamics of direct N2O fluxes from agro-ecosystems in cold climates: importance of year-round measurements in multiple cropping systems

NASA Astrophysics Data System (ADS)

Wagner-Riddle, C.; Tenuta, M.

2014-12-01

Soil N2O fluxes (direct emissions) are highly variable in time and space due to soil, weather and management drivers. In cold climates, freeze/thaw cycles and short growing seasons can enhance soil N2O production contributing to the temporal variability of fluxes. Year-round measurements of N2O fluxes in multiple cropping systems are needed to decrease the uncertainty of annual emission estimates and to devise mitigation practices for emission reduction in cold climates. We have deployed a micrometeorological flux-gradient approach coupled to a tunable diode laser absorption spectroscopy system at two long-term sites in Canada: Elora, Ontario (2000-2014) and Glenlea, Manitoba (2006-2014). Quasi-simultaneous half-hourly flux measurements on four 4-ha fields within a level and aerodynamically homogeneous landscape were obtained allowing for comparison of crop type and/or management practices within and between years. Annual crops such as corn, soybeans, wheat, and barley received typical inorganic fertilizer and/or manure applications, and best management practices such as timing of application and reduced tillage were studied. Perennial grass-alfalfa hayfields were compared to annual crops during selected time periods. Here we synthesize the long-term datasets from these two sites, and quantify the overall contribution of non-growing season (mainly freeze/thaw cycles) and growing season (mainly nitrogen application) to annual emission totals. Uncertainties of regional estimates for cold-climates will be assessed using these long-term datasets.

Modeling the interaction between plant canopies and the planetary boundary layer using a new 1D multi-layer soil- vegetation-atmosphere transfer (SVAT) scheme combined with a non-local turbulence closure model

NASA Astrophysics Data System (ADS)

Yetzer, Kenneth H.

A new one-dimensional (1D) soil-vegetation-atmospheric transport (SVAT) scheme is coupled to a nonlocal turbulence closure model in order to simulate the interactions between a forested canopy and the planetary boundary layer. The SVAT consists of mechanistic models for both physiological (photosynthesis, stomatal conductance and soil/root and bole respiration) and micrometeorological (radiative transfer and surface energy exchanges) processes. The turbulence closure model is a first-order, nonlocal turbulence closure called transilient turbulence theory (Stull, 1993; Inclan et al., 1995) which includes the effects of form drag, wake turbulence, and interference to vertical mixing by the plant elements. The submodel that accounts for radiative transfer inside the forest has been taken from Norman (1979) and Baldocchi (1989). It includes the effect of varying mean leaf inclination angle with height and it also accounts for leaf clumping The photosynthesis submodel is taken from Nikolov and others (1995). It accounts for both differences between shaded and sunlit leaves and the variation of photosynthetic capacity with height. The model was tested with data obtained from a deciduous forest in Pennsylvania. The results show reasonable agreement with the observations. They also demonstrate the model's ability to simulate phenomena that is characteristic of tall canopies like forests, including counter gradient-fluxes and local wind speed maxima in the trunk space.

Application of the conjugate-gradient method to ground-water models

USGS Publications Warehouse

Manteuffel, T.A.; Grove, D.B.; Konikow, Leonard F.

1984-01-01

The conjugate-gradient method can solve efficiently and accurately finite-difference approximations to the ground-water flow equation. An aquifer-simulation model using the conjugate-gradient method was applied to a problem of ground-water flow in an alluvial aquifer at the Rocky Mountain Arsenal, Denver, Colorado. For this application, the accuracy and efficiency of the conjugate-gradient method compared favorably with other available methods for steady-state flow. However, its efficiency relative to other available methods depends on the nature of the specific problem. The main advantage of the conjugate-gradient method is that it does not require the use of iteration parameters, thereby eliminating this partly subjective procedure. (USGS)

Comparison of genetic algorithms with conjugate gradient methods

NASA Technical Reports Server (NTRS)

Bosworth, J. L.; Foo, N. Y.; Zeigler, B. P.

1972-01-01

Genetic algorithms for mathematical function optimization are modeled on search strategies employed in natural adaptation. Comparisons of genetic algorithms with conjugate gradient methods, which were made on an IBM 1800 digital computer, show that genetic algorithms display superior performance over gradient methods for functions which are poorly behaved mathematically, for multimodal functions, and for functions obscured by additive random noise. Genetic methods offer performance comparable to gradient methods for many of the standard functions.

Architecture of the Black Moshannon forest canopy measured by hemispherical photographs and a LI-COR LAI-2000 sensor

Treesearch

Y. S. Wang; J. Welles; D. R. Miller; D. E. Anderson; G. Heisler; M. McManus

1991-01-01

Non-destructive measurements of light penetration were made at 10 heights in the canopy on twelve different sites in the PA oak forest where the Blackmo 88 spray-micrometeorological experiment was conducted. Vertical profiles of Leaf Area Index, LAI, were calculated from these measurements, and the data were used to define the spatial variability of the forest canopy...

Ozone and carbon dioxide fluxes in a subalpine spruce-fir forest ecosystem

Treesearch

Karl Zeller

1995-01-01

RMFRES RWU 4452 has made several ozone (O3) and carbon dioxide (CO2) trace gas flux measurements in the Snowy Range, WY GLEES research area over the past few years. These measurements were made using the micrometeorological eddy correlation technique at two sites: one 6 m above tree canopy height on the Brooklyn tower (ozone only); and the other below canopy height, 1-...

Where the Rubber Meets the Road; Varied Techniques for Measuring the Land-Atmosphere Exchange of Water and Energy in a California Watershed and the Driving Influences on this Exchange

NASA Astrophysics Data System (ADS)

Kochendorfer, J.; Viers, J.; Niswonger, R.; Paw U, K.; Haas, E.; Reck, R. A.

2005-12-01

In conjunction with the Cosumnes Research Group, we performed a field study along the Cosumnes River in California's Central Valley. The study included tower-based evapotranspiration estimates, continuous hydrologic measurements, and analysis of remote sensing data. We estimated the effects of phreatophytic evapotranspiration on groundwater from scales as small as an individual stand of trees to as large as the watershed and explored the climactic and hydrologic controls over riparian evapotranspiration. Tower-based evapotranspiration measurements included one eddy covariance tower within a cottonwood forest (Populus fremontii), and one surface temperature/micrometeorological evapotranspiration tower within a willow stand (Salix lasiolepis). The technique used on the surface temperature/micrometeorological evapotranspiration tower was developed and chosen in preference to eddy covariance for a site where a considerable quantity of the riparian ecosystem to atmosphere exchange is advective. Hydrologic techniques included measurements of groundwater depth and volumetric soil moisture. We also examined multitemporal, multiresolution remotely sensed imagery to correlate evapotranspiration rates for a restored cottonwood forest with derived vegetation indices. These indices were evaluated for applicability to other restored riparian habitats within the Cosumnes River Preserve and to help guide future restoration actions as a function of hydrologic connectivity and water demand.

Gradient optimization and nonlinear control

NASA Technical Reports Server (NTRS)

Hasdorff, L.

1976-01-01

The book represents an introduction to computation in control by an iterative, gradient, numerical method, where linearity is not assumed. The general language and approach used are those of elementary functional analysis. The particular gradient method that is emphasized and used is conjugate gradient descent, a well known method exhibiting quadratic convergence while requiring very little more computation than simple steepest descent. Constraints are not dealt with directly, but rather the approach is to introduce them as penalty terms in the criterion. General conjugate gradient descent methods are developed and applied to problems in control.

Aerodynamic performance of a low-speed wind tunnel.

PubMed

Frechen, F-B; Frey, M; Wett, M; Löser, C

2004-01-01

The determination of the odour mass flow emitted from a source is a very important step and forms the basis for all subsequent considerations and calculations. Wastewater treatment plants, as well as waste treatment facilities, consist of different kinds of odour sources. Unfortunately, most of the sources are passive sources, where no outward air flow-rate can be measured, but where odorants are obviously emitted. Thus, a type of sampling is required that allows to measure the emitted odour flow-rate (OFR). To achieve this, different methods are in use worldwide. Besides indirect methods, such as micrometeorological atmospheric dispersion models, which have not been used in Germany (in other countries due to different problems, direct methods are also used). Direct measurements include hood methods, commonly divided into static flux chambers, dynamic flux chambers and wind tunnels. The wind tunnel that we have been operating in principle since 1983 is different from all subsequent presented wind tunnels, in that we operate it at a considerably lower wind speed than the others. To describe the behaviour of this wind tunnel, measurement of the flow pattern in this low-speed tunnel are under way, and some initial results are presented here.

Phase gradient imaging for positive contrast generation to superparamagnetic iron oxide nanoparticle-labeled targets in magnetic resonance imaging.

PubMed

Zhu, Haitao; Demachi, Kazuyuki; Sekino, Masaki

2011-09-01

Positive contrast imaging methods produce enhanced signal at large magnetic field gradient in magnetic resonance imaging. Several postprocessing algorithms, such as susceptibility gradient mapping and phase gradient mapping methods, have been applied for positive contrast generation to detect the cells targeted by superparamagnetic iron oxide nanoparticles. In the phase gradient mapping methods, smoothness condition has to be satisfied to keep the phase gradient unwrapped. Moreover, there has been no discussion about the truncation artifact associated with the algorithm of differentiation that is performed in k-space by the multiplication with frequency value. In this work, phase gradient methods are discussed by considering the wrapping problem when the smoothness condition is not satisfied. A region-growing unwrapping algorithm is used in the phase gradient image to solve the problem. In order to reduce the truncation artifact, a cosine function is multiplied in the k-space to eliminate the abrupt change at the boundaries. Simulation, phantom and in vivo experimental results demonstrate that the modified phase gradient mapping methods may produce improved positive contrast effects by reducing truncation or wrapping artifacts. Copyright © 2011 Elsevier Inc. All rights reserved.

Some advance on the comprehension of SR analysis for estimating the flux of a scalar

NASA Astrophysics Data System (ADS)

Castellví, Dr

2009-04-01

In agronomy, the eddy covariance, EC, method likely is the preferred for measuring surface scalar fluxes. For latent heat flux, however, weighing lysimeters maybe preferred in agriculture, but they are rarely affordable and not portable. The dissipation method, DM, is considered the most reliable technique for measuring scalar fluxes over open water because instrument motion contaminates the EC measurements. The main advantage of DM over EC is that it is less sensitive to low frequency instrument platform motions (such as ship and buoys), sensor alignment, precise orientation and stringent steadiness in the mean meteorological conditions (Fairall and Larsen, 1986; Kader, 1992; Edson and Fairall, 1998). Over land, keeping in mind that the EC and DM methods require the same measurements for scalar flux measurement, the DM has several disadvantages versus the EC. Direct measurement of the scalar variance dissipation rate, VDR, requires to capture eddies in the Kolmogorov's microscale (thus scalar time series measured at frequencies in the order of kHz are needed). Therefore, it is not practical. Indirect methods to estimate VDR (such as spectral analysis and second or third order structure functions) requires implementing iterative methods involving similarity relationships that are not well established (Hsieh and Katul, 1997; Castellvi and Snyder, 2008). Currently, there is ample evidence that the DM as explained in traditional micrometeorological books (such as, Panofsky and Dutton, 1984; Brutsaert, 1988; Kaimal and Finnigan; 1994) is, in general, not correct. Accordingly, it likely explains why DM is typically omitted in revisits of micrometeorological methods for estimating scalar fluxes in agronomy. Within the last decade, over some agricultural surfaces, evidence has been shown on the advantages over other micrometeorological methods and the reliability (i.e., close performance to the EC method) of Surface Renewal, SR, theory in conjunction with the Analysis of the scalar time trace to estimate scalar surface fluxes (Paw U et al., 1995). The analysis consists on determination of the mean ramp-pattern dimensions observed in the trace measured at one height. SR analysis is a simple transilient theory that is Lagrangian in nature and based on the scalar conservation equation. Here, it is shown (indirectly) that for a steady, incompressible and horizontally homogeneous flow, the production term in the budget equation of the mean turbulent variance of a scalar can be expressed in terms of the mean ramp dimensions observed in the trace. Therefore, the budget equation provides a link between the contrasting DM and SR analysis methods for estimating scalar surface fluxes. The dissipation method is based on the finest turbulence scales, whereas the SR analysis is based on canopy-scale coherent structures. By normalizing the budget equation, and invoking similarity, it is shown that DM and SR analysis are closely related (details were given in Castellvi and Snyder, 2008). However, SR analysis avoids the disadvantages of DM and it also overcomes potential problems related with the EC method (such as perfect alignment, rotation of the wind field, sensor separation, shadowing, etc.) because the velocity field (i.e., the sonic anemometer) is not required in SR analysis. The relation between SR analysis and DM allows to better interpret a crucial parameter (originally, denoted as α) involved in SR analysis. The parameter α was implemented to account for three assumptions made to solve the scalar flux conservation equation coupled with the Lagrangian scalar mass conservation equation. Considering an air parcel that suddenly moves down to the surface which volume covers all the vertical extend of the surface sources (sinks), the assumptions made are the following; (1) The air parcel remains in contact with the sources (sinks) for a period during which it has been enriched (depleted) of scalar, (2) During the enrichment phase there is not loss of scalar (heat for temperature) through the air parcel top, and (3) Molecular diffusion within the air parcel can be neglected. According to the new α parameter expression derived, it is shown that the half-hourly α value is related to the capability of turbulence to mix the scalar within the air parcel during the enrichment (depletion) phase. The expression depends on the variance of the scalar associated to isotropic turbulence over the total (organized and isotropic). The α expression suggests that half-hourly α values are in the range, 0 < α ≤ 1, at least when measurements are taken in the inertial sub-layer over vegetated surfaces. Acknowledgments The author gratefully acknowledges K.T. Paw U and R.L Snyder for his encouragement in doing this study. This work was supported by the TRANSCLA project and a fellowship from the Ministerio de Ciencia y Innovaci

A new smoothing modified three-term conjugate gradient method for [Formula: see text]-norm minimization problem.

PubMed

Du, Shouqiang; Chen, Miao

2018-01-01

We consider a kind of nonsmooth optimization problems with [Formula: see text]-norm minimization, which has many applications in compressed sensing, signal reconstruction, and the related engineering problems. Using smoothing approximate techniques, this kind of nonsmooth optimization problem can be transformed into a general unconstrained optimization problem, which can be solved by the proposed smoothing modified three-term conjugate gradient method. The smoothing modified three-term conjugate gradient method is based on Polak-Ribière-Polyak conjugate gradient method. For the Polak-Ribière-Polyak conjugate gradient method has good numerical properties, the proposed method possesses the sufficient descent property without any line searches, and it is also proved to be globally convergent. Finally, the numerical experiments show the efficiency of the proposed method.

A Brazilian network of carbon flux stations

NASA Astrophysics Data System (ADS)

Roberti, Débora R.; Acevedo, Otávio C.; Moraes, Osvaldo L. L.

2012-05-01

First Brasflux Workshop; Santa Maria, Rio Grande do Sul, Brazil, 14-15 November 2011 Last November, 33 researchers participated in a workshop to establish Brasflux, the Brazilian network of carbon flux stations, with the objective of integrating previous efforts and planning for the future. Among the participants were those leading ongoing flux observation projects and others planning to establish flux stations in the near future. International scientists also participated to share the experiences gained with other networks. The need to properly characterize terrestrial ecosystems for their roles in the global carbon, water, and energy budgets has motivated the implementation of hundreds of micrometeorological research sites throughout the world in recent years. The eddy covariance (EC) technique for turbulent flux determination is the preferred method to provide integral information on ecosystematmosphere exchanges. Integrating the observations regionally and globally has proven to be an effective approach to maximizing the usefulness of this technique for carbon cycle studies at multiple scales.

Linking Tree Growth Response to Measured Microclimate - A Field Based Approach

NASA Astrophysics Data System (ADS)

Martin, J. T.; Hoylman, Z. H.; Looker, N. T.; Jencso, K. G.; Hu, J.

2015-12-01

The general relationship between climate and tree growth is a well established and important tenet shaping both paleo and future perspectives of forest ecosystem growth dynamics. Across much of the American west, water limits growth via physiological mechanisms that tie regional and local climatic conditions to forest productivity in a relatively predictable way, and these growth responses are clearly evident in tree ring records. However, within the annual cycle of a forest landscape, water availability varies across both time and space, and interacts with other potentially growth limiting factors such as temperature, light, and nutrients. In addition, tree growth responses may lag climate drivers and may vary in terms of where in a tree carbon is allocated. As such, determining when and where water actually limits forest growth in real time can be a significant challenge. Despite these challenges, we present data suggestive of real-time growth limitation driven by soil moisture supply and atmospheric water demand reflected in high frequency field measurements of stem radii and cell structure across ecological gradients. The experiment was conducted at the Lubrecht Experimental Forest in western Montana where, over two years, we observed intra-annual growth rates of four dominant conifer species: Douglas fir, Ponderosa Pine, Engelmann Spruce and Western Larch using point dendrometers and microcores. In all four species studied, compensatory use of stored water (inferred from stem water deficit) appears to exhibit a threshold relationship with a critical balance point between water supply and demand. The occurrence of this point in time coincided with a decrease in stem growth rates, and the while the timing varied up to one month across topographic and elevational gradients, the onset date of growth limitation was a reliable predictor of overall annual growth. Our findings support previous model-based observations of nonlinearity in the relationship between climate and annual ring formation, and suggest a rather immediate growth response to critical micro-meteorological conditions occurring at different times across the landscape by linking the timing and magnitude of tree growth responses to in situ measurements of environmental conditions.

Four years of ozone measurements in the Central Amazon - Absorption mechanisms and reactions within the rainforest

NASA Astrophysics Data System (ADS)

Wolff, Stefan; Ganzeveld, Laurens; Tsokankunku, Anywhere; Saturno, Jorge; Souza, Rodrigo; Trebs, Ivonne; Sörgel, Matthias

2017-04-01

The ATTO (Amazon Tall Tower Observatory) site (02°08'38.8''S, 58°59'59.5''W) is located in the remote Amazon rainforest, allowing atmospheric and forest studies away from nearby anthropogenic emission sources. Starting with continuous measurements of vertical mixing ratio profiles of H2O, CO2 and O3 in April 2012 at 8 heights between 0.05 m and 80 m above ground, the longest continuous record of near surface O3 in the Amazon rainforest was established. Black carbon (BC), CO and micrometeorological measurements are available for the same period. During intensive campaigns, NOx was measured as well using the same profile system, and therefore several month of parallel NOx measurements are available. This data allows the analyses of diverse patterns regarding emission, deposition, turbulence and chemical reactions of trace gases within and above the rainforest for several rainy and dry seasons. The remote Amazon generally serves as a sink for O3 which is mainly deposited to the canopy. The deposition depends to a large extent on the aperture of the leaf stomata, which is correlated to temperature, humidity, solar radiation and water availability. Comparing these parameters with the in-canopy and above canopy gradients of O3, considering the turbulent conditions and further chemical reactions of O3 with NOx and VOC molecules, we estimated the role of the forest for the removal of ozone from the atmosphere under different meteorological conditions. We applied the Multi-Layer Canopy Chemical Exchange Model - MLC-CHEM to support the analysis of the observed profiles of NOx and O3. Under pristine conditions, the forest soil is the major source for NO emissions, which are directly reacting with O3 molecules, affecting the O3 gradient within the sub-canopy. We have analyzed differences between model and measurements in sub-canopy NO and O3 mixing ratios by the application of different NO soil emission scenarios and by the performance of several sensitivity analyses to investigate the deposition of O3 and NO2 in the canopy.

Evaluation of an alternate method for sampling benthic macroinvertebrates in low-gradient streams sampled as part of the National Rivers and Streams Assessment.

PubMed

Flotemersch, Joseph E; North, Sheila; Blocksom, Karen A

2014-02-01

Benthic macroinvertebrates are sampled in streams and rivers as one of the assessment elements of the US Environmental Protection Agency's National Rivers and Streams Assessment. In a 2006 report, the recommendation was made that different yet comparable methods be evaluated for different types of streams (e.g., low gradient vs. high gradient). Consequently, a research element was added to the 2008-2009 National Rivers and Streams Assessment to conduct a side-by-side comparison of the standard macroinvertebrate sampling method with an alternate method specifically designed for low-gradient wadeable streams and rivers that focused more on stream edge habitat. Samples were collected using each method at 525 sites in five of nine aggregate ecoregions located in the conterminous USA. Methods were compared using the benthic macroinvertebrate multimetric index developed for the 2006 Wadeable Streams Assessment. Statistical analysis did not reveal any trends that would suggest the overall assessment of low-gradient streams on a regional or national scale would change if the alternate method was used rather than the standard sampling method, regardless of the gradient cutoff used to define low-gradient streams. Based on these results, the National Rivers and Streams Survey should continue to use the standard field method for sampling all streams.

Gravity gradient preprocessing at the GOCE HPF

NASA Astrophysics Data System (ADS)

Bouman, J.; Rispens, S.; Gruber, T.; Schrama, E.; Visser, P.; Tscherning, C. C.; Veicherts, M.

2009-04-01

One of the products derived from the GOCE observations are the gravity gradients. These gravity gradients are provided in the Gradiometer Reference Frame (GRF) and are calibrated in-flight using satellite shaking and star sensor data. In order to use these gravity gradients for application in Earth sciences and gravity field analysis, additional pre-processing needs to be done, including corrections for temporal gravity field signals to isolate the static gravity field part, screening for outliers, calibration by comparison with existing external gravity field information and error assessment. The temporal gravity gradient corrections consist of tidal and non-tidal corrections. These are all generally below the gravity gradient error level, which is predicted to show a 1/f behaviour for low frequencies. In the outlier detection the 1/f error is compensated for by subtracting a local median from the data, while the data error is assessed using the median absolute deviation. The local median acts as a high-pass filter and it is robust as is the median absolute deviation. Three different methods have been implemented for the calibration of the gravity gradients. All three methods use a high-pass filter to compensate for the 1/f gravity gradient error. The baseline method uses state-of-the-art global gravity field models and the most accurate results are obtained if star sensor misalignments are estimated along with the calibration parameters. A second calibration method uses GOCE GPS data to estimate a low degree gravity field model as well as gravity gradient scale factors. Both methods allow to estimate gravity gradient scale factors down to the 10-3 level. The third calibration method uses high accurate terrestrial gravity data in selected regions to validate the gravity gradient scale factors, focussing on the measurement band. Gravity gradient scale factors may be estimated down to the 10-2 level with this method.

Preprocessing of gravity gradients at the GOCE high-level processing facility

NASA Astrophysics Data System (ADS)

Bouman, Johannes; Rispens, Sietse; Gruber, Thomas; Koop, Radboud; Schrama, Ernst; Visser, Pieter; Tscherning, Carl Christian; Veicherts, Martin

2009-07-01

One of the products derived from the gravity field and steady-state ocean circulation explorer (GOCE) observations are the gravity gradients. These gravity gradients are provided in the gradiometer reference frame (GRF) and are calibrated in-flight using satellite shaking and star sensor data. To use these gravity gradients for application in Earth scienes and gravity field analysis, additional preprocessing needs to be done, including corrections for temporal gravity field signals to isolate the static gravity field part, screening for outliers, calibration by comparison with existing external gravity field information and error assessment. The temporal gravity gradient corrections consist of tidal and nontidal corrections. These are all generally below the gravity gradient error level, which is predicted to show a 1/ f behaviour for low frequencies. In the outlier detection, the 1/ f error is compensated for by subtracting a local median from the data, while the data error is assessed using the median absolute deviation. The local median acts as a high-pass filter and it is robust as is the median absolute deviation. Three different methods have been implemented for the calibration of the gravity gradients. All three methods use a high-pass filter to compensate for the 1/ f gravity gradient error. The baseline method uses state-of-the-art global gravity field models and the most accurate results are obtained if star sensor misalignments are estimated along with the calibration parameters. A second calibration method uses GOCE GPS data to estimate a low-degree gravity field model as well as gravity gradient scale factors. Both methods allow to estimate gravity gradient scale factors down to the 10-3 level. The third calibration method uses high accurate terrestrial gravity data in selected regions to validate the gravity gradient scale factors, focussing on the measurement band. Gravity gradient scale factors may be estimated down to the 10-2 level with this method.

$L_{0}$ Gradient Projection.

PubMed

Ono, Shunsuke

2017-04-01

Minimizing L 0 gradient, the number of the non-zero gradients of an image, together with a quadratic data-fidelity to an input image has been recognized as a powerful edge-preserving filtering method. However, the L 0 gradient minimization has an inherent difficulty: a user-given parameter controlling the degree of flatness does not have a physical meaning since the parameter just balances the relative importance of the L 0 gradient term to the quadratic data-fidelity term. As a result, the setting of the parameter is a troublesome work in the L 0 gradient minimization. To circumvent the difficulty, we propose a new edge-preserving filtering method with a novel use of the L 0 gradient. Our method is formulated as the minimization of the quadratic data-fidelity subject to the hard constraint that the L 0 gradient is less than a user-given parameter α . This strategy is much more intuitive than the L 0 gradient minimization because the parameter α has a clear meaning: the L 0 gradient value of the output image itself, so that one can directly impose a desired degree of flatness by α . We also provide an efficient algorithm based on the so-called alternating direction method of multipliers for computing an approximate solution of the nonconvex problem, where we decompose it into two subproblems and derive closed-form solutions to them. The advantages of our method are demonstrated through extensive experiments.

Rapid analysis of charge variants of monoclonal antibodies using non-linear salt gradient in cation-exchange high performance liquid chromatography.

PubMed

Joshi, Varsha; Kumar, Vijesh; Rathore, Anurag S

2015-08-07

A method is proposed for rapid development of a short, analytical cation exchange high performance liquid chromatography method for analysis of charge heterogeneity in monoclonal antibody products. The parameters investigated and optimized include pH, shape of elution gradient and length of the column. It is found that the most important parameter for development of a shorter method is the choice of the shape of elution gradient. In this paper, we propose a step by step approach to develop a non-linear sigmoidal shape gradient for analysis of charge heterogeneity for two different monoclonal antibody products. The use of this gradient not only decreases the run time of the method to 4min against the conventional method that takes more than 40min but also the resolution is retained. Superiority of the phosphate gradient over sodium chloride gradient for elution of mAbs is also observed. The method has been successfully evaluated for specificity, sensitivity, linearity, limit of detection, and limit of quantification. Application of this method as a potential at-line process analytical technology tool has been suggested. Copyright © 2015 Elsevier B.V. All rights reserved.

Investigation of chamber methods and a micrometeorological mass balance method for quantifying greenhouse gas emissions from animal manure

NASA Astrophysics Data System (ADS)

Park, Kyu-Hyun

Various measurement methods to quantify greenhouse gas (GHG) emissions from manure storage or treatment facilities have been used. However, it is difficult to directly compare emission data measured with different methods, which causes uncertainties in national GHG inventories. In the micrometeorological mass balance (MMB) method, a gas flux consists of a horizontal mean flux (MF) and horizontal turbulent flux (TF) terms. In Chapter 2, methane (GH4 ) TF measurements obtained using a sonic anemometer and a tunable diode laser trace gas analyzer are presented. Contrary to previous studies in wind tunnels and flat-level field conditions, an overestimation of only 0.5% was observed by only considering the MF term. This means the MMB method without consideration of TF is suitable in complex field conditions with uneven topography, and farm buildings. In Chapter 3, the MMB method was compared to a floating chamber method. Of these, the floating chamber method has been extensively used for CH4 flux quantification. The MMB method, although providing advantages such as spatial integration of fluxes, requires fast response trace gas analyzers which are not widely available. The mean ratio of CH4 flux measured with the floating chamber method to that measured using the MMB method was 1.25, ranging from 1.07 to 1.83. Flux overestimation by the floating chamber could have been caused by location of the chamber and potential disturbances by the chamber. Frequent changes of the chamber location, use of several chambers, and/or avoiding chamber placement on 'hot spots' are recommended to decrease flux overestimation. In Chapter 4, CH4 fluxes measured with a mega chamber and eight small chambers during the in-vessel composting phase showed similar temporal variation, while nitrous oxide (N2O) fluxes were, significantly lower for the small chambers. The ratios of CH4 fluxes measured with a mega chamber to eight small chambers during the in-vessel composting phase were 0.72 and 1.01, while the ratios of N2O fluxes were 2.74 and 2.01 during two in-vessel composting batches, respectively. Positioning the small chambers on the center line of the composting channels was suitable for quantifying CH4 fluxes, but was not for N 2O. It is recommended to position some chambers in peripheral regions of the composting channel, in order to capture N2O emissions. Methane and N2O fluxes over the initial 50 d of the curing phase were higher than during the in-vessel composting phase. Methane and N2O emissions during the curing phase contributed 95% and 64%, respectively, to overall CH4 and N2O emissions during the composting process (in-vessel composting phase and curing phase). In comparison to liquid swine manure storage over an equivalent time period, composting was estimated to reduce emissions of GHG on a carbon dioxide equivalent (CO2-eq) basis by 35%, which was mainly contributed by a decrease of CH4 emissions. Composting of liquid swine manure with straw has potential for decreasing GHG emissions.

Micrometeorological Measurement of Fetch- and Atmospheric Stability-Dependent Air- Water Exchange of Legacy Semivolatile Organic Contaminants in Lake Superior

NASA Astrophysics Data System (ADS)

Perlinger, J. A.; Tobias, D. E.; Rowe, M. D.

2008-12-01

Coastal waters including the Laurentian Great Lakes are particularly susceptible to local, regional, and long- range transport and deposition of semivolatile organic contaminants (SOCs) as gases and/or associated with particles. Recently-marketed SOCs can be expected to undergo net deposition in surface waters, whereas legacy SOCs such as polychlorinated biphenyls (PCBs) are likely to be at equilibrium with respect to air-water exchange, or, if atmospheric concentrations decrease through, e.g., policy implementation, to undergo net gas emission. SOC air-water exchange flux is usually estimated using the two-film model. This model describes molecular diffusion through the air and water films adjacent to the air-water interface. Air-water exchange flux is estimated as the product of SOC fugacity, typically based on on-shore gaseous concentration measurements, and a transfer coefficient, the latter which is estimated from SOC properties and environmental conditions. The transfer coefficient formulation commonly applied neglects resistance to exchange in the internal boundary layer under atmospherically stable conditions, and the use of on-shore gaseous concentration neglects fetch-dependent equilibration, both of which will tend to cause overestimation of flux magnitude. Thus, for legacy chemicals or in any highly contaminated surface water, the rate at which the water is cleansed through gas emission tends to be over-predicted using this approach. Micrometeorological measurement of air-water exchange rates of legacy SOCs was carried out on ships during four transect experiments during off-shore flow in Lake Superior using novel multicapillary collection devices and thermal extraction technology to measure parts-per-quadrillion SOC levels. Employing sensible heat in the modified Bowen ratio, fluxes at three over-water stations along the transects were measured, along with up-wind, onshore gaseous concentration and aqueous concentration. The atmosphere was unstable for one of the four trajectories and stable for the other three trajectories. Two of three transects carried out under stable conditions are complicated because, as revealed by back-trajectory analysis, different air masses were sampled at each station, and, for one of these transects, the air masses spent significant portions of time over land. Analyses of legacy pesticide concentrations carried out to date suggest that under stable and unstable conditions, fluxes were out of the lake. We present and compare micrometeorological measurements and two-film estimates of fluxes of legacy pesticides and PCBs.

Modeling soybean canopy resistance from micrometeorological and plant variables for estimating evapotranspiration using one-step Penman-Monteith approach

NASA Astrophysics Data System (ADS)

Irmak, Suat; Mutiibwa, Denis; Payero, Jose; Marek, Thomas; Porter, Dana

2013-12-01

Canopy resistance (rc) is one of the most important variables in evapotranspiration, agronomy, hydrology and climate change studies that link vegetation response to changing environmental and climatic variables. This study investigates the concept of generalized nonlinear/linear modeling approach of rc from micrometeorological and plant variables for soybean [Glycine max (L.) Merr.] canopy at different climatic zones in Nebraska, USA (Clay Center, Geneva, Holdrege and North Platte). Eight models estimating rc as a function of different combination of micrometeorological and plant variables are presented. The models integrated the linear and non-linear effects of regulating variables (net radiation, Rn; relative humidity, RH; wind speed, U3; air temperature, Ta; vapor pressure deficit, VPD; leaf area index, LAI; aerodynamic resistance, ra; and solar zenith angle, Za) to predict hourly rc. The most complex rc model has all regulating variables and the simplest model has only Rn, Ta and RH. The rc models were developed at Clay Center in the growing season of 2007 and applied to other independent sites and years. The predicted rc for the growing seasons at four locations were then used to estimate actual crop evapotranspiration (ETc) as a one-step process using the Penman-Monteith model and compared to the measured data at all locations. The models were able to account for 66-93% of the variability in measured hourly ETc across locations. Models without LAI generally underperformed and underestimated due to overestimation of rc, especially during full canopy cover stage. Using vapor pressure deficit or relative humidity in the models had similar effect on estimating rc. The root squared error (RSE) between measured and estimated ETc was about 0.07 mm h-1 for most of the models at Clay Center, Geneva and Holdrege. At North Platte, RSE was above 0.10 mm h-1. The results at different sites and different growing seasons demonstrate the robustness and consistency of the models in estimating soybean rc, which is encouraging towards the general application of one-step estimation of soybean canopy ETc in practice using the Penman-Monteith model and could aid in enhancing the utilization of the approach by irrigation and water management community.

Gradients estimation from random points with volumetric tensor in turbulence

NASA Astrophysics Data System (ADS)

Watanabe, Tomoaki; Nagata, Koji

2017-12-01

We present an estimation method of fully-resolved/coarse-grained gradients from randomly distributed points in turbulence. The method is based on a linear approximation of spatial gradients expressed with the volumetric tensor, which is a 3 × 3 matrix determined by a geometric distribution of the points. The coarse grained gradient can be considered as a low pass filtered gradient, whose cutoff is estimated with the eigenvalues of the volumetric tensor. The present method, the volumetric tensor approximation, is tested for velocity and passive scalar gradients in incompressible planar jet and mixing layer. Comparison with a finite difference approximation on a Cartesian grid shows that the volumetric tensor approximation computes the coarse grained gradients fairly well at a moderate computational cost under various conditions of spatial distributions of points. We also show that imposing the solenoidal condition improves the accuracy of the present method for solenoidal vectors, such as a velocity vector in incompressible flows, especially when the number of the points is not large. The volumetric tensor approximation with 4 points poorly estimates the gradient because of anisotropic distribution of the points. Increasing the number of points from 4 significantly improves the accuracy. Although the coarse grained gradient changes with the cutoff length, the volumetric tensor approximation yields the coarse grained gradient whose magnitude is close to the one obtained by the finite difference. We also show that the velocity gradient estimated with the present method well captures the turbulence characteristics such as local flow topology, amplification of enstrophy and strain, and energy transfer across scales.

A new gradient shimming method based on undistorted field map of B0 inhomogeneity.

PubMed

Bao, Qingjia; Chen, Fang; Chen, Li; Song, Kan; Liu, Zao; Liu, Chaoyang

2016-04-01

Most existing gradient shimming methods for NMR spectrometers estimate field maps that resolve B0 inhomogeneity spatially from dual gradient-echo (GRE) images acquired at different echo times. However, the distortions induced by B0 inhomogeneity that always exists in the GRE images can result in estimated field maps that are distorted in both geometry and intensity, leading to inaccurate shimming. This work proposes a new gradient shimming method based on undistorted field map of B0 inhomogeneity obtained by a more accurate field map estimation technique. Compared to the traditional field map estimation method, this new method exploits both the positive and negative polarities of the frequency encoded gradients to eliminate the distortions caused by B0 inhomogeneity in the field map. Next, the corresponding automatic post-data procedure is introduced to obtain undistorted B0 field map based on knowledge of the invariant characteristics of the B0 inhomogeneity and the variant polarity of the encoded gradient. The experimental results on both simulated and real gradient shimming tests demonstrate the high performance of this new method. Copyright © 2015 Elsevier Inc. All rights reserved.

Full magnetic gradient tensor from triaxial aeromagnetic gradient measurements: Calculation and application

NASA Astrophysics Data System (ADS)

Luo, Yao; Wu, Mei-Ping; Wang, Ping; Duan, Shu-Ling; Liu, Hao-Jun; Wang, Jin-Long; An, Zhan-Feng

2015-09-01

The full magnetic gradient tensor (MGT) refers to the spatial change rate of the three field components of the geomagnetic field vector along three mutually orthogonal axes. The tensor is of use to geological mapping, resources exploration, magnetic navigation, and others. However, it is very difficult to measure the full magnetic tensor gradient using existing engineering technology. We present a method to use triaxial aeromagnetic gradient measurements for deriving the full MGT. The method uses the triaxial gradient data and makes full use of the variation of the magnetic anomaly modulus in three dimensions to obtain a self-consistent magnetic tensor gradient. Numerical simulations show that the full MGT data obtained with the proposed method are of high precision and satisfy the requirements of data processing. We selected triaxial aeromagnetic gradient data from the Hebei Province for calculating the full MGT. Data processing shows that using triaxial tensor gradient data allows to take advantage of the spatial rate of change of the total field in three dimensions and suppresses part of the independent noise in the aeromagnetic gradient. The calculated tensor components have improved resolution, and the transformed full tensor gradient satisfies the requirement of geological mapping and interpretation.

Some Instruments Used by Division 10, NDRC at Dugway Proving Ground for Continuous Recording of Micrometeorological Conditions

DTIC Science & Technology

1945-10-01

I. INTRODUCTION One of the original objectives of the NDRC Laboratory at Dugwoy Proving Ground was to study and assess the effect of...the results of the experiment should include information from more than one looation on the target, or else a study at one location of the varia...forecasts or in other micrometeorologioal studies . In addition it has proved useful in measurements on wind profiles« temperature profiles, and

The ISAC-CNR micrometeorological base and database in Lecce

NASA Astrophysics Data System (ADS)

Martano, P.; Grasso, F.; Elefante, C.

2010-09-01

The micrometeorological base of CNR-ISAC in Lecce, South-East of Italy, is active since 2002, in collecting experimental data about surface-atmosphere transfer of momentum heat and water vapour. It operates in a periurban site inside the Salento University campus and has been improved along the past years in terms of active sensors to give a quite complete description of the soil-atmosphere vertical transfer. It is composed by a 16 m mast with fast response (eddy correlation) instrumentation and an ancillary automatic meteorological station collecting also soil data at 2 levels depth. Fast response data are pre-processed in half-hour averaged statistics. All collected data are available in a web database (www.basesperimentale.le.isac.cnr.it) where they can be visualized or downloaded. A real time automated connection between the base and the data base is also in progress. At present the Lecce data base is also a pilot reference structure for the Climate Change Section of the CNR-DTA GIIDA project (National Research Council - Earth and Environment Department, Interdisciplinary and Interoperational Management of Environmental Data), aimed to build a spatial data infrastructure between different CNR-DTA structures collecting environmental data. This will allow easier search and availability for a great deal of environmental information in terms of data associated to international quality standards and metadata systems (GEOSS, GMES, INSPIRE).

Data network, collection, and analysis in the Diamond Valley flow system, central Nevada

USGS Publications Warehouse

Knochenmus, Lari A.; Berger, David L.; Moreo, Michael T.; Smith, J. LaRue

2011-01-01

Future groundwater development and its effect on future municipal, irrigation, and alternative energy uses in the Diamond Valley flow system are of concern for officials in Eureka County, Nevada. To provide a better understanding of the groundwater resources, the U.S. Geological Survey, in cooperation with Eureka County, commenced a multi-phase study of the Diamond Valley flow system in 2005. Groundwater development primarily in southern Diamond Valley has resulted in water-level declines since the 1960s ranging from less than 5 to 100 feet. Groundwater resources in the Diamond Valley flow system outside of southern Diamond Valley have been relatively undeveloped. Data collected during phase 2 of the study (2006-09) included micrometeorological data at 4 evapotranspiration stations, 3 located in natural vegetation and 1 located in an agricultural field; groundwater levels in 95 wells; water-quality constituents in aquifers and springs at 21 locations; lithologic information from 7 recently drilled wells; and geophysical logs from 3 well sites. This report describes what was accomplished during phase 2 of the study, provides the data collected, and presents the approaches to strengthen relations between evapotranspiration rates measured at micrometeorological stations and spatially distributed groundwater discharge. This report also presents the approach to improve delineation of areas of groundwater discharge and describes the current methodology used to improve the accuracy of spatially distributed groundwater discharge rates in the Diamond Valley flow system.

Magnetoelectrets prepared by using temperature gradient method

NASA Astrophysics Data System (ADS)

Ojha, Pragya; Qureshi, M. S.; Malik, M. M.

2015-05-01

A novel Temperature Gradient method for preparation of magnetoelectret is proposed. Non uniform magnetic field and temperature gradient are expected to be the main cause for the formation of magnetoelectrets (MEs). Being bad conductors of heat, during their formation, there is a possibility for the existence of a temperature gradient along the dielectric electrode interface. In this condition, the motion of, molecules and charge carriers are dependent on Temperature Gradient in a preferred direction. To increase this temperature gradient on both sides of the sample novel method for the preparation of MEs is developed for the first time. For this method the special sample holders are designed in our laboratory. MEs are prepared in such a way that one surface is cooled and the other is heated, during the process. With the help of XRD analysis using Type-E orientation pattern and surface charge studies on magnetoelectrets, the two main causes Non uniform magnetic field and temperature gradient for the formation of magnetoelectrets (MEs), are authenticated experimentally.

3D turbulence measurements in inhomogeneous boundary layers with three wind LiDARs

NASA Astrophysics Data System (ADS)

Carbajo Fuertes, Fernando; Valerio Iungo, Giacomo; Porté-Agel, Fernando

2014-05-01

One of the most challenging tasks in atmospheric anemometry is obtaining reliable turbulence measurements of inhomogeneous boundary layers at heights or in locations where is not possible or convenient to install tower-based measurement systems, e.g. mountainous terrain, cities, wind farms, etc. Wind LiDARs are being extensively used for the measurement of averaged vertical wind profiles, but they can only successfully accomplish this task under the limiting conditions of flat terrain and horizontally homogeneous flow. Moreover, it has been shown that common scanning strategies introduce large systematic errors in turbulence measurements, regardless of the characteristics of the flow addressed. From the point of view of research, there exist a variety of techniques and scanning strategies to estimate different turbulence quantities but most of them rely in the combination of raw measurements with atmospheric models. Most of those models are only valid under the assumption of horizontal homogeneity. The limitations stated above can be overcome by a new triple LiDAR technique which uses simultaneous measurements from three intersecting Doppler wind LiDARs. It allows for the reconstruction of the three-dimensional velocity vector in time as well as local velocity gradients without the need of any turbulence model and with minimal assumptions [EGU2013-9670]. The triple LiDAR technique has been applied to the study of the flow over the campus of EPFL in Lausanne (Switzerland). The results show the potential of the technique for the measurement of turbulence in highly complex boundary layer flows. The technique is particularly useful for micrometeorology and wind engineering studies.

Impact of synoptic controls and boundary layer processes on ground-level ozone evolution at an urban site

NASA Astrophysics Data System (ADS)

Haman, Christine Lanier

Houston, Texas frequently exceeds the standard for ground-level ozone during the spring and fall. The large commuting population and vast number of industrial sources provide the necessary ingredients for photochemical ozone production in the presence of favorable meteorological conditions. The lack of continuous boundary layer (BL) observations prevents a comprehensive understanding of its role in ozone evolution. In this study, almost two years of BL observations are utilized to investigate the impacts of synoptic and micrometeorological-scale forcings on ozone. Aerosol gradients derived from ceilometer backscatter retrievals are used to identify the BL and residual layers (RL). Overall agreement is found between ceilometer and sonde estimates of the RL and BL heights (BLH), but difficulty detecting the layers occurs during cloud periods or immediately following precipitation. Large monthly variability is present in the peak afternoon BLH (e.g. mean August and December peaks are ˜2000 and 1100 m, respectively). Monthly nocturnal BLHs display much smaller differences. The majority of ozone exceedances occur during large-scale subsidence and weak winds in a postfrontal environment. These conditions result in turbulent kinetic energy, mechanical mixing, and ventilation processes that are 2--3 times weaker on exceedance days, which inhibit morning BL growth by an average of ˜100 m·hr-1 compared to low ozone days. The spring has higher nocturnal ozone levels, which is likely attributable to longer day lengths (˜78 minutes), stronger winds (˜0.78 m·s -1), and higher background ozone (˜5 ppbv) compared to the fall. Boundary layer entrainment plays an important role in ozone evolution. Exceedance days show a characteristic early morning rapid rise of ozone. Vertical ozone profiles indicate the RL ozone peak is ˜60 ppbv on exceedance days, which is ˜25 ppbv (+/- 10 ppbv) greater than low ozone days. The Integrated Profile Mixing (IPM) and Photochemical Budget (PB) methods are used to quantify ozone transport and photochemical production. On low ozone days, both the IPM and PB methods indicate ozone entrainment is ˜3--4 ppbv·hr-1 in this low photochemical environment of ˜1--4 ppbv·hr-1. During the rapid early morning ozone rise on exceedance days, RL entrainment and photochemical ozone production rates are 5--10 and 10--15 ppbv·hr -1, respectively.

Radiofrequency pulse design using nonlinear gradient magnetic fields.

PubMed

Kopanoglu, Emre; Constable, R Todd

2015-09-01

An iterative k-space trajectory and radiofrequency (RF) pulse design method is proposed for excitation using nonlinear gradient magnetic fields. The spatial encoding functions (SEFs) generated by nonlinear gradient fields are linearly dependent in Cartesian coordinates. Left uncorrected, this may lead to flip angle variations in excitation profiles. In the proposed method, SEFs (k-space samples) are selected using a matching pursuit algorithm, and the RF pulse is designed using a conjugate gradient algorithm. Three variants of the proposed approach are given: the full algorithm, a computationally cheaper version, and a third version for designing spoke-based trajectories. The method is demonstrated for various target excitation profiles using simulations and phantom experiments. The method is compared with other iterative (matching pursuit and conjugate gradient) and noniterative (coordinate-transformation and Jacobian-based) pulse design methods as well as uniform density spiral and EPI trajectories. The results show that the proposed method can increase excitation fidelity. An iterative method for designing k-space trajectories and RF pulses using nonlinear gradient fields is proposed. The method can either be used for selecting the SEFs individually to guide trajectory design, or can be adapted to design and optimize specific trajectories of interest. © 2014 Wiley Periodicals, Inc.

Determination of boundaries between ranges of high and low gradient of beam profile.

PubMed

Wendykier, Jacek; Bieniasiewicz, Marcin; Grządziel, Aleksandra; Jedynak, Tadeusz; Kośniewski, Wiktor; Reudelsdorf, Marta; Wendykier, Piotr

2016-01-01

This work addresses the problem of treatment planning system commissioning by introducing a new method of determination of boundaries between high and low gradient in beam profile. The commissioning of a treatment planning system is a very important task in the radiation therapy. One of the main goals of this task is to compare two field profiles: measured and calculated. Applying points of 80% and 120% of nominal field size can lead to the incorrect determination of boundaries, especially for small field sizes. The method that is based on the beam profile gradient allows for proper assignment of boundaries between high and low gradient regions even for small fields. TRS 430 recommendations for commissioning were used. The described method allows a separation between high and low gradient, because it directly uses the value of the gradient of a profile. For small fields, the boundaries determined by the new method allow a commissioning of a treatment planning system according to the TRS 430, while the point of 80% of nominal field size is already in the high gradient region. The method of determining the boundaries by using the beam profile gradient can be extremely helpful during the commissioning of the treatment planning system for Intensity Modulated Radiation Therapy or for other techniques which require very small field sizes.

Pure phase encode magnetic field gradient monitor.

PubMed

Han, Hui; MacGregor, Rodney P; Balcom, Bruce J

2009-12-01

Numerous methods have been developed to measure MRI gradient waveforms and k-space trajectories. The most promising new strategy appears to be magnetic field monitoring with RF microprobes. Multiple RF microprobes may record the magnetic field evolution associated with a wide variety of imaging pulse sequences. The method involves exciting one or more test samples and measuring the time evolution of magnetization through the FIDs. Two critical problems remain. The gradient waveform duration is limited by the sample T(2)*, while the k-space maxima are limited by gradient dephasing. The method presented is based on pure phase encode FIDs and solves the above two problems in addition to permitting high strength gradient measurement. A small doped water phantom (1-3 mm droplet, T(1), T(2), T(2)* < 100 micros) within a microprobe is excited by a series of closely spaced broadband RF pulses each followed by FID single point acquisition. Two trial gradient waveforms have been chosen to illustrate the technique, neither of which could be measured by the conventional RF microprobe measurement. The first is an extended duration gradient waveform while the other illustrates the new method's ability to measure gradient waveforms with large net area and/or high amplitude. The new method is a point monitor with simple implementation and low cost hardware requirements.

Non-Gradient Blue Native Polyacrylamide Gel Electrophoresis.

PubMed

Luo, Xiaoting; Wu, Jinzi; Jin, Zhen; Yan, Liang-Jun

2017-02-02

Gradient blue native polyacrylamide gel electrophoresis (BN-PAGE) is a well established and widely used technique for activity analysis of high-molecular-weight proteins, protein complexes, and protein-protein interactions. Since its inception in the early 1990s, a variety of minor modifications have been made to this gradient gel analytical method. Here we provide a major modification of the method, which we call non-gradient BN-PAGE. The procedure, similar to that of non-gradient SDS-PAGE, is simple because there is no expensive gradient maker involved. The non-gradient BN-PAGE protocols presented herein provide guidelines on the analysis of mitochondrial protein complexes, in particular, dihydrolipoamide dehydrogenase (DLDH) and those in the electron transport chain. Protocols for the analysis of blood esterases or mitochondrial esterases are also presented. The non-gradient BN-PAGE method may be tailored for analysis of specific proteins according to their molecular weight regardless of whether the target proteins are hydrophobic or hydrophilic. © 2017 by John Wiley & Sons, Inc. Copyright © 2017 John Wiley & Sons, Inc.

A critical analysis of some popular methods for the discretisation of the gradient operator in finite volume methods

NASA Astrophysics Data System (ADS)

Syrakos, Alexandros; Varchanis, Stylianos; Dimakopoulos, Yannis; Goulas, Apostolos; Tsamopoulos, John

2017-12-01

Finite volume methods (FVMs) constitute a popular class of methods for the numerical simulation of fluid flows. Among the various components of these methods, the discretisation of the gradient operator has received less attention despite its fundamental importance with regards to the accuracy of the FVM. The most popular gradient schemes are the divergence theorem (DT) (or Green-Gauss) scheme and the least-squares (LS) scheme. Both are widely believed to be second-order accurate, but the present study shows that in fact the common variant of the DT gradient is second-order accurate only on structured meshes whereas it is zeroth-order accurate on general unstructured meshes, and the LS gradient is second-order and first-order accurate, respectively. This is explained through a theoretical analysis and is confirmed by numerical tests. The schemes are then used within a FVM to solve a simple diffusion equation on unstructured grids generated by several methods; the results reveal that the zeroth-order accuracy of the DT gradient is inherited by the FVM as a whole, and the discretisation error does not decrease with grid refinement. On the other hand, use of the LS gradient leads to second-order accurate results, as does the use of alternative, consistent, DT gradient schemes, including a new iterative scheme that makes the common DT gradient consistent at almost no extra cost. The numerical tests are performed using both an in-house code and the popular public domain partial differential equation solver OpenFOAM.

A different approach to estimate nonlinear regression model using numerical methods

NASA Astrophysics Data System (ADS)

Mahaboob, B.; Venkateswarlu, B.; Mokeshrayalu, G.; Balasiddamuni, P.

2017-11-01

This research paper concerns with the computational methods namely the Gauss-Newton method, Gradient algorithm methods (Newton-Raphson method, Steepest Descent or Steepest Ascent algorithm method, the Method of Scoring, the Method of Quadratic Hill-Climbing) based on numerical analysis to estimate parameters of nonlinear regression model in a very different way. Principles of matrix calculus have been used to discuss the Gradient-Algorithm methods. Yonathan Bard [1] discussed a comparison of gradient methods for the solution of nonlinear parameter estimation problems. However this article discusses an analytical approach to the gradient algorithm methods in a different way. This paper describes a new iterative technique namely Gauss-Newton method which differs from the iterative technique proposed by Gorden K. Smyth [2]. Hans Georg Bock et.al [10] proposed numerical methods for parameter estimation in DAE’s (Differential algebraic equation). Isabel Reis Dos Santos et al [11], Introduced weighted least squares procedure for estimating the unknown parameters of a nonlinear regression metamodel. For large-scale non smooth convex minimization the Hager and Zhang (HZ) conjugate gradient Method and the modified HZ (MHZ) method were presented by Gonglin Yuan et al [12].

Gaussian Process Regression for Uncertainty Estimation on Ecosystem Data

NASA Astrophysics Data System (ADS)

Menzer, O.; Moffat, A.; Lasslop, G.; Reichstein, M.

2011-12-01

The flow of carbon between terrestrial ecosystems and the atmosphere is mainly driven by nonlinear, complex and time-lagged processes. Understanding the associated ecosystem responses and climatic feedbacks is a key challenge regarding climate change questions such as increasing atmospheric CO2 levels. Usually, the underlying relationships are implemented in models as prescribed functions which interlink numerous meteorological, radiative and gas exchange variables. In contrast, supervised Machine Learning algorithms, such as Artificial Neural Networks or Gaussian Processes, allow for an insight into the relationships directly from a data perspective. Micrometeorological, high resolution measurements at flux towers of the FLUXNET observational network are an essential tool for obtaining quantifications of the ecosystem variables, as they continuously record e.g. CO2 exchange, solar radiation and air temperature. In order to facilitate the investigation of the interactions and feedbacks between these variables, several challenging data properties need to be taken into account: noisy, multidimensional and incomplete (Moffat, Accepted). The task of estimating uncertainties in such micrometeorological measurements can be addressed by Gaussian Processes (GPs), a modern nonparametric method for nonlinear regression. The GP approach has recently been shown to be a powerful modeling tool, regardless of the input dimensionality, the degree of nonlinearity and the noise level (Rasmussen and Williams, 2006). Heteroscedastic Gaussian Processes (HGPs) are a specialized GP method for data with a varying, inhomogeneous noise variance (Goldberg et al., 1998; Kersting et al., 2007), as usually observed in CO2 flux measurements (Richardson et al., 2006). Here, we showed by an evaluation of the HGP performance in several artificial experiments and a comparison to existing nonlinear regression methods, that their outstanding ability is to capture measurement noise levels, concurrently providing reasonable data fits under relatively few assumptions. On the basis of incomplete, half-hourly measured ecosystem data, a HGP was trained to model NEP (Net Ecosystem Production), only with the drivers PPFD (Photosynthetic Photon Flux Density) and Air Temperature. Time information was added to account for the autocorrelation in the flux measurements. Provided with a gap-filled, meteorological time series, NEP and the corresponding random error estimates can then be predicted empirically at high temporal resolution. We report uncertainties in annual sums of CO2 exchange at two flux tower sites in Hainich, Germany and Hesse, France. Similar noise patterns, but different magnitudes between sites were detected, with annual random error estimates of +/- 14.1 gCm^-2yr^-1 and +/- 23.5 gCm^-2yr^-1, respectively, for the year 2001. Existing models calculate uncertainties by evaluating the standard deviation of the model residuals. A comparison to the methods of Reichstein et al. (2005) and Lasslop et al. (2008) showed confidence both in the predictive uncertainties and the annual sums modeled with the HGP approach.

The q-G method : A q-version of the Steepest Descent method for global optimization.

PubMed

Soterroni, Aline C; Galski, Roberto L; Scarabello, Marluce C; Ramos, Fernando M

2015-01-01

In this work, the q-Gradient (q-G) method, a q-version of the Steepest Descent method, is presented. The main idea behind the q-G method is the use of the negative of the q-gradient vector of the objective function as the search direction. The q-gradient vector, or simply the q-gradient, is a generalization of the classical gradient vector based on the concept of Jackson's derivative from the q-calculus. Its use provides the algorithm an effective mechanism for escaping from local minima. The q-G method reduces to the Steepest Descent method when the parameter q tends to 1. The algorithm has three free parameters and it is implemented so that the search process gradually shifts from global exploration in the beginning to local exploitation in the end. We evaluated the q-G method on 34 test functions, and compared its performance with 34 optimization algorithms, including derivative-free algorithms and the Steepest Descent method. Our results show that the q-G method is competitive and has a great potential for solving multimodal optimization problems.

Linear solvation energy relationships in normal phase chromatography based on gradient separations.

PubMed

Wu, Di; Lucy, Charles A

2017-09-22

Coupling the modified Soczewiñski model and one gradient run, a gradient method was developed to build a linear solvation energy relationship (LSER) for normal phase chromatography. The gradient method was tested on dinitroanilinopropyl (DNAP) and silica columns with hexane/dichloromethane (DCM) mobile phases. LSER models built based on the gradient separation agree with those derived from a series of isocratic separations. Both models have similar LSER coefficients and comparable goodness of fit, but the LSER model based on gradient separation required fewer trial and error experiments. Copyright © 2017 Elsevier B.V. All rights reserved.

RF Pulse Design using Nonlinear Gradient Magnetic Fields

PubMed Central

Kopanoglu, Emre; Constable, R. Todd

2014-01-01

Purpose An iterative k-space trajectory and radio-frequency (RF) pulse design method is proposed for Excitation using Nonlinear Gradient Magnetic fields (ENiGMa). Theory and Methods The spatial encoding functions (SEFs) generated by nonlinear gradient fields (NLGFs) are linearly dependent in Cartesian-coordinates. Left uncorrected, this may lead to flip-angle variations in excitation profiles. In the proposed method, SEFs (k-space samples) are selected using a Matching-Pursuit algorithm, and the RF pulse is designed using a Conjugate-Gradient algorithm. Three variants of the proposed approach are given: the full-algorithm, a computationally-cheaper version, and a third version for designing spoke-based trajectories. The method is demonstrated for various target excitation profiles using simulations and phantom experiments. Results The method is compared to other iterative (Matching-Pursuit and Conjugate Gradient) and non-iterative (coordinate-transformation and Jacobian-based) pulse design methods as well as uniform density spiral and EPI trajectories. The results show that the proposed method can increase excitation fidelity significantly. Conclusion An iterative method for designing k-space trajectories and RF pulses using nonlinear gradient fields is proposed. The method can either be used for selecting the SEFs individually to guide trajectory design, or can be adapted to design and optimize specific trajectories of interest. PMID:25203286

A weighted variational gradient-based fusion method for high-fidelity thin cloud removal of Landsat images

NASA Astrophysics Data System (ADS)

Huang, Wei; Chen, Xiu; Wang, Yueyun

2018-03-01

Landsat data are widely used in various earth observations, but the clouds interfere with the applications of the images. This paper proposes a weighted variational gradient-based fusion method (WVGBF) for high-fidelity thin cloud removal of Landsat images, which is an improvement of the variational gradient-based fusion (VGBF) method. The VGBF method integrates the gradient information from the reference band into visible bands of cloudy image to enable spatial details and remove thin clouds. The VGBF method utilizes the same gradient constraints to the entire image, which causes the color distortion in cloudless areas. In our method, a weight coefficient is introduced into the gradient approximation term to ensure the fidelity of image. The distribution of weight coefficient is related to the cloud thickness map. The map is built on Independence Component Analysis (ICA) by using multi-temporal Landsat images. Quantitatively, we use R value to evaluate the fidelity in the cloudless regions and metric Q to evaluate the clarity in the cloud areas. The experimental results indicate that the proposed method has the better ability to remove thin cloud and achieve high fidelity.

Measurements of micrometeorological parameters for testing large scale models

NASA Technical Reports Server (NTRS)

Kanemasu, E. T.; Demetriades-Shah, Tanvir; Watts, David; Nie, Dalin; Ballou, Larry; Harbers, Galen

1989-01-01

This annual report discusses work accomplished on the FIFE (First International Satellite Land-Surface Climatology) Project. It contains manuscripts and reports during the past year of Grant NAG 5-389. Of its six chapters, three treat soil heat flux, and two deal with information about the FIFE sites. The first chapter on net radiation and the fourth chapter are to be presented at the Agricultural and Forest Meteorology Conference to be held in March 1989 in Charleston, South Carolina.

A new method of determining moisture gradient in wood

Treesearch

Zhiyong Cai

2008-01-01

Moisture gradient in wood and wood composites is one of most important factors that affects both physical stability and mechanical performance. This paper describes a method for measuring moisture gradient in lumber and engineering wood composites as it varies across material thickness. This innovative method employs a collimated radiation beam (x rays or [gamma] rays...

Relationships between Hg Air-surface exchange, Soil Moisture and Precipitation at a Background Vegetated Site in South-Eastern Australia.

NASA Astrophysics Data System (ADS)

Macsween, K.; Edwards, G. C.

2017-12-01

Despite many decades of research, the controlling mechanisms of mercury (Hg) air-surface exhange are still poorly understood. Particularly in Australian ecosystems where there are few anthropogenic inputs. A clear understanding of these mechanisms is vital for accurate representation in the global Hg models, particularly regarding re-emission. Water is known to have a considerable influence on Hg exchange within a terrestrial ecosystem. Precipitation has been found to cause spikes is Hg emissions during the initial stages of rain event. While, Soil moisture content is known to enhance fluxes between 15 and 30% Volumetric soil water (VSW), above which fluxes become suppressed. Few field experiments exist to verify these dominantly laboratory or controlled experiments. Here we present work looking at Hg fluxes over an 8-month period at a vegetated background site. The aim of this study is to identify how changes to precipitation intensity and duration, coupled with variable soil moisture content may influence Hg flux across seasons. As well as the influence of other meteorological variables. Experimentation was undertaken using aerodynamic gradient micrometeorological flux method, avoiding disruption to the surface, soil moisture probes and rain gauge measurements to monitor alterations to substrate conditions. Meteorological and air chemistry variables were also measured concurrently throughout the duration of the study. During the study period, South-Eastern Australia experienced several intense east coast low storm systems during the Autumn and Spring months and an unusually dry winter. VSW rarely reached above 30% even following the intense rainfall experienced during the east coast lows. The generally dry conditions throughout winter resulted in an initial spike in Hg emissions when rainfall occurred. Fluxes decreased shortly after the rain began but remained slightly elevated. Given the reduced net radiation and cooler temperatures experienced during the winter months soils took several days to dry out, resulting in slightly enhanced fluxes for the days preceding rainfall. It is thought that seasonality of rainfall has a significant impact of Hg air-surface exchange trends, both through increased recovery times once rain has past and through the increased occurrence of major storm events.

A comparison of methods for computing the sigma-coordinate pressure gradient force for flow over sloped terrain in a hybrid theta-sigma model

NASA Technical Reports Server (NTRS)

Johnson, D. R.; Uccellini, L. W.

1983-01-01

In connection with the employment of the sigma coordinates introduced by Phillips (1957), problems can arise regarding an accurate finite-difference computation of the pressure gradient force. Over steeply sloped terrain, the calculation of the sigma-coordinate pressure gradient force involves computing the difference between two large terms of opposite sign which results in large truncation error. To reduce the truncation error, several finite-difference methods have been designed and implemented. The present investigation has the objective to provide another method of computing the sigma-coordinate pressure gradient force. Phillips' method is applied for the elimination of a hydrostatic component to a flux formulation. The new technique is compared with four other methods for computing the pressure gradient force. The work is motivated by the desire to use an isentropic and sigma-coordinate hybrid model for experiments designed to study flow near mountainous terrain.

A three-term conjugate gradient method under the strong-Wolfe line search

NASA Astrophysics Data System (ADS)

Khadijah, Wan; Rivaie, Mohd; Mamat, Mustafa

2017-08-01

Recently, numerous studies have been concerned in conjugate gradient methods for solving large-scale unconstrained optimization method. In this paper, a three-term conjugate gradient method is proposed for unconstrained optimization which always satisfies sufficient descent direction and namely as Three-Term Rivaie-Mustafa-Ismail-Leong (TTRMIL). Under standard conditions, TTRMIL method is proved to be globally convergent under strong-Wolfe line search. Finally, numerical results are provided for the purpose of comparison.

The equivalent magnetizing method applied to the design of gradient coils for MRI.

PubMed

Lopez, Hector Sanchez; Liu, Feng; Crozier, Stuart

2008-01-01

This paper presents a new method for the design of gradient coils for Magnetic Resonance Imaging systems. The method is based on the equivalence between a magnetized volume surrounded by a conducting surface and its equivalent representation in surface current/charge density. We demonstrate that the curl of the vertical magnetization induces a surface current density whose stream line defines the coil current pattern. This method can be applied for coils wounds on arbitrary surface shapes. A single layer unshielded transverse gradient coil is designed and compared, with the designs obtained using two conventional methods. Through the presented example we demonstrate that the generated unconventional current patterns obtained using the magnetizing current method produces a superior gradient coil performance than coils designed by applying conventional methods.

Approximate error conjugation gradient minimization methods

DOEpatents

Kallman, Jeffrey S

2013-05-21

In one embodiment, a method includes selecting a subset of rays from a set of all rays to use in an error calculation for a constrained conjugate gradient minimization problem, calculating an approximate error using the subset of rays, and calculating a minimum in a conjugate gradient direction based on the approximate error. In another embodiment, a system includes a processor for executing logic, logic for selecting a subset of rays from a set of all rays to use in an error calculation for a constrained conjugate gradient minimization problem, logic for calculating an approximate error using the subset of rays, and logic for calculating a minimum in a conjugate gradient direction based on the approximate error. In other embodiments, computer program products, methods, and systems are described capable of using approximate error in constrained conjugate gradient minimization problems.

Biomaterials with persistent growth factor gradients in vivo accelerate vascularized tissue formation.

PubMed

Akar, Banu; Jiang, Bin; Somo, Sami I; Appel, Alyssa A; Larson, Jeffery C; Tichauer, Kenneth M; Brey, Eric M

2015-12-01

Gradients of soluble factors play an important role in many biological processes, including blood vessel assembly. Gradients can be studied in detail in vitro, but methods that enable the study of spatially distributed soluble factors and multi-cellular processes in vivo are limited. Here, we report on a method for the generation of persistent in vivo gradients of growth factors in a three-dimensional (3D) biomaterial system. Fibrin loaded porous poly (ethylene glycol) (PEG) scaffolds were generated using a particulate leaching method. Platelet derived growth factor BB (PDGF-BB) was encapsulated into poly (lactic-co-glycolic acid) (PLGA) microspheres which were placed distal to the tissue-material interface. PLGA provides sustained release of PDGF-BB and its diffusion through the porous structure results in gradient formation. Gradients within the scaffold were confirmed in vivo using near-infrared fluorescence imaging and gradients were present for more than 3 weeks. The diffusion of PDGF-BB was modeled and verified with in vivo imaging findings. The depth of tissue invasion and density of blood vessels formed in response to the biomaterial increased with magnitude of the gradient. This biomaterial system allows for generation of sustained growth factor gradients for the study of tissue response to gradients in vivo. Published by Elsevier Ltd.

A Storm-by-Storm Analysis of Alpine and Regional Precipitation Dynamics at the Mount Hunter Ice Core Site, Denali National Park, Central Alaska Range

NASA Astrophysics Data System (ADS)

Saylor, P. L.; Osterberg, E. C.; Kreutz, K. J.; Wake, C. P.; Winski, D.

2014-12-01

In May-June 2013, an NSF-funded team from Dartmouth College and the Universities of Maine and New Hampshire collected two 1000-year ice cores to bedrock from the summit plateau of Mount Hunter in Denali National Park, Alaska (62.940291, -151.087616, 3912 m). The snow accumulation record from these ice cores will provide key insight into late Holocene precipitation variability in central Alaska, and compliment existing precipitation paleorecords from the Mt. Logan and Eclipse ice cores in coastal SE Alaska. However, correct interpretation of the Mt. Hunter accumulation record requires an understanding of the relationships between regional meteorological events and micrometeorological conditions at the Mt. Hunter ice core collection site. Here we analyze a three-month window of snow accumulation and meteorological conditions recorded by an Automatic Weather Station (AWS) at the Mt. Hunter site during the summer of 2013. Snow accumulation events are identified in the Mt. Hunter AWS dataset, and compared on a storm-by-storm basis to AWS data collected from the adjacent Kahiltna glacier 2000 m lower in elevation, and to regional National Weather Service (NWS) station data. We also evaluate the synoptic conditions associated with each Mt. Hunter accumulation event using NWS surface maps, NCEP-NCAR Reanalysis data, and the NOAA HYSPLIT back trajectory model. We categorize each Mt. Hunter accumulation event as pure snow accumulation, drifting, or blowing snow events based on snow accumulation, wind speed and temperature data using the method of Knuth et al (2009). We analyze the frequency and duration of events within each accumulation regime, in addition to the overall contribution of each event to the snowpack. Preliminary findings indicate that a majority of Mt. Hunter accumulation events are of pure accumulation nature (55.5%) whereas drifting (28.6%) and blowing (15.4%) snow events play a secondary role. Our results will characterize the local accumulation dynamics on Mt. Hunter and quantify the relationship between alpine micrometeorological and regional precipitation dynamics, providing key insights into the interpretation of the Mt. Hunter paleoprecipitation record.

Scaling Erica arborea transpiration from trees up to the stand using auxiliary micrometeorological information in a wax myrtle-tree heath cloud forest (La Gomera, Canary Islands).

PubMed

Regalado, Carlos M; Ritter, Axel

2013-09-01

We investigate evapotranspiration, sap flow and top soil water content variations in a wax myrtle-tree heath ('fayal-brezal' in Spanish) cloud forest in the Garajonay National Park (La Gomera, Canary Islands) over a 1-year period. We provide transpiration estimates for one of the representative species, the shrubby needle-like Erica arborea L., present in this relict subtropical forest. An ad hoc tree up to the stand scaling method that combines the sap flow and auxiliary reference evapotranspiration data is illustrated, showing to be useful when sap flow in a limited number of trees has been monitored. Individual daily-based scaling curves of the Gompertz type were necessary to explain the observed sap flow variability in E. arborea during the 1-year period investigated (r(2) ≥ 0.953 with mode of r(2) = 0.9999). The mean daily sap flow of an E. arborea individual amounted to 8.37 ± 5.65 kg day(-1) tree(-1), with a maximum of 20.48 kg day(-1) tree(-1), yielding an annual total of 3052.89 kg tree(-1). A comparison of the computed daily transpiration with the continuous micrometeorological time series monitored in the studied plot suggested that solar radiation was the main driving force of transpiration in E. arborea (cross correlation index = 0.94). Fog may also affect tree transpiration via its reduction of radiation and temperature, such that during foggy periods the mean daily water loss estimate of E. arborea was 5.35 ± 4.30 kg day(-1) tree(-1), which sharply contrasted with the 2.4-fold average transpiration values obtained for fog-free days, i.e., 12.81 ± 4.33 kg day(-1) tree(-1). The annual water balance rendered a 288 mm year(-1) water input to the forest and evidenced the need for accurately quantifying the contribution of fog water dripping from the canopy.

Determination of wall shear stress from mean velocity and Reynolds shear stress profiles

NASA Astrophysics Data System (ADS)

Volino, Ralph J.; Schultz, Michael P.

2018-03-01

An analytical method is presented for determining the Reynolds shear stress profile in steady, two-dimensional wall-bounded flows using the mean streamwise velocity. The method is then utilized with experimental data to determine the local wall shear stress. The procedure is applicable to flows on smooth and rough surfaces with arbitrary pressure gradients. It is based on the streamwise component of the boundary layer momentum equation, which is transformed into inner coordinates. The method requires velocity profiles from at least two streamwise locations, but the formulation of the momentum equation reduces the dependence on streamwise gradients. The method is verified through application to laminar flow solutions and turbulent DNS results from both zero and nonzero pressure gradient boundary layers. With strong favorable pressure gradients, the method is shown to be accurate for finding the wall shear stress in cases where the Clauser fit technique loses accuracy. The method is then applied to experimental data from the literature from zero pressure gradient studies on smooth and rough walls, and favorable and adverse pressure gradient cases on smooth walls. Data from very near the wall are not required for determination of the wall shear stress. Wall friction velocities obtained using the present method agree with those determined in the original studies, typically to within 2%.

The discrete adjoint method for parameter identification in multibody system dynamics.

PubMed

Lauß, Thomas; Oberpeilsteiner, Stefan; Steiner, Wolfgang; Nachbagauer, Karin

2018-01-01

The adjoint method is an elegant approach for the computation of the gradient of a cost function to identify a set of parameters. An additional set of differential equations has to be solved to compute the adjoint variables, which are further used for the gradient computation. However, the accuracy of the numerical solution of the adjoint differential equation has a great impact on the gradient. Hence, an alternative approach is the discrete adjoint method , where the adjoint differential equations are replaced by algebraic equations. Therefore, a finite difference scheme is constructed for the adjoint system directly from the numerical time integration method. The method provides the exact gradient of the discretized cost function subjected to the discretized equations of motion.

Brain vascular image enhancement based on gradient adjust with split Bregman

NASA Astrophysics Data System (ADS)

Liang, Xiao; Dong, Di; Hui, Hui; Zhang, Liwen; Fang, Mengjie; Tian, Jie

2016-04-01

Light Sheet Microscopy is a high-resolution fluorescence microscopic technique which enables to observe the mouse brain vascular network clearly with immunostaining. However, micro-vessels are stained with few fluorescence antibodies and their signals are much weaker than large vessels, which make micro-vessels unclear in LSM images. In this work, we developed a vascular image enhancement method to enhance micro-vessel details which should be useful for vessel statistics analysis. Since gradient describes the edge information of the vessel, the main idea of our method is to increase the gradient values of the enhanced image to improve the micro-vessels contrast. Our method contained two steps: 1) calculate the gradient image of LSM image, and then amplify high gradient values of the original image to enhance the vessel edge and suppress low gradient values to remove noises. Then we formulated a new L1-norm regularization optimization problem to find an image with the expected gradient while keeping the main structure information of the original image. 2) The split Bregman iteration method was used to deal with the L1-norm regularization problem and generate the final enhanced image. The main advantage of the split Bregman method is that it has both fast convergence and low memory cost. In order to verify the effectiveness of our method, we applied our method to a series of mouse brain vascular images acquired from a commercial LSM system in our lab. The experimental results showed that our method could greatly enhance micro-vessel edges which were unclear in the original images.

Technical Note: Interleaved Bipolar Acquisition and Low-rank Reconstruction for Water-Fat Separation in MRI.

PubMed

Cho, JaeJin; Park, HyunWook

2018-05-17

To acquire interleaved bipolar data and reconstruct the full data using low-rank property for water fat separation. Bipolar acquisition suffers from issues related to gradient switching, the opposite gradient polarities, and other system imperfections, which prevent accurate water-fat separation. In this study, an interleaved bipolar acquisition scheme and a low-rank reconstruction method were proposed to reduce issues from the bipolar gradients while achieving a short imaging time. The proposed interleaved bipolar acquisition scheme collects echo-time signals from both gradient polarities; however, the sequence increases the imaging time. To reduce the imaging time, the signals were subsampled at every dimension of k-space. The low-rank property of the bipolar acquisition was defined and exploited to estimate the full data from the acquired subsampled data. To eliminate the bipolar issues, in the proposed method, the water-fat separation was performed separately for each gradient polarity, and the results for the positive and negative gradient polarities were combined after the water-fat separation. A phantom study and in-vivo experiments were conducted on a 3T Siemens Verio system. The results for the proposed method were compared with the results of the fully sampled interleaved bipolar acquisition and Soliman's method, which was the previous water-fat separation approach for reducing the issues of bipolar gradients and accelerating the interleaved bipolar acquisition. The proposed method provided accurate water and fat images without the issues of bipolar gradients and demonstrated a better performance compared with the results of the previous methods. The water-fat separation using the bipolar acquisition has several benefits including a short echo-spacing time. However, it suffers from bipolar-gradient issues such as strong gradient switching, system imperfection, and eddy current effects. This study demonstrated that accurate water-fat separated images can be obtained using the proposed interleaved bipolar acquisition and low-rank reconstruction by using the benefits of the bipolar acquisition while reducing the bipolar-gradient issues with a short imaging time. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

Outdoor thermal comfort in public space in warm-humid Guayaquil, Ecuador

NASA Astrophysics Data System (ADS)

Johansson, Erik; Yahia, Moohammed Wasim; Arroyo, Ivette; Bengs, Christer

2018-03-01

The thermal environment outdoors affects human comfort and health. Mental and physical performance is reduced at high levels of air temperature being a problem especially in tropical climates. This paper deals with human comfort in the warm-humid city of Guayaquil, Ecuador. The main aim was to examine the influence of urban micrometeorological conditions on people's subjective thermal perception and to compare it with two thermal comfort indices: the physiologically equivalent temperature (PET) and the standard effective temperature (SET*). The outdoor thermal comfort was assessed through micrometeorological measurements of air temperature, humidity, mean radiant temperature and wind speed together with a questionnaire survey consisting of 544 interviews conducted in five public places of the city during both the dry and rainy seasons. The neutral and preferred values as well as the upper comfort limits of PET and SET* were determined. For both indices, the neutral values and upper thermal comfort limits were lower during the rainy season, whereas the preferred values were higher during the rainy season. Regardless of season, the neutral values of PET and SET* are above the theoretical neutral value of each index. The results show that local people accept thermal conditions which are above acceptable comfort limits in temperate climates and that the subjective thermal perception varies within a wide range. It is clear, however, that the majority of the people in Guayaquil experience the outdoor thermal environment during daytime as too warm, and therefore, it is important to promote an urban design which creates shade and ventilation.

Intermediate time scale response of atmospheric CO 2 following prescribed fire in a longleaf pine forest

DOE Office of Scientific and Technical Information (OSTI.GOV)

Viner, Brian; Parker, M.; Maze, G.

Fire plays an essential role in maintaining the structure and function of longleaf pine ecosystems. While the effects of fire on carbon cycle have been measured in previous studies for short periods during a burn and for multiyear periods following the burn, information on how carbon cycle is influenced by such changes over the span of a few weeks to months has yet to be quantified. We have analyzed high-frequency measurements of CO 2 concentration and flux, as well as associated micrometeorological variables, at three levels of the tall Aiken AmeriFlux tower during and after a prescribed burn. Measurements ofmore » the CO 2 concentration and vertical fluxes were examined as well as calculated net ecosystem exchange (NEE) for periods prior to and after the burn. Large spikes in both CO 2 concentration and CO 2 flux during the fire and increases in atmospheric CO 2 concentration and reduced CO 2 flux were observed for several weeks following the burn, particularly below the forest canopy. Both CO 2 measurements and NEE were found to return to their preburn states within 60–90 days following the burn when no statistical significance was found between preburn and postburn NEE. Furthermore, this study examines the micrometeorological conditions during a low-intensity prescribed burn and its short-term effects on local CO 2 dynamics in a forested environment by identifying observable impacts on local measurements of atmospheric CO 2 concentration and fluxes.« less

Surface emissions of heat, water and GHGs from a NYC greenroof

NASA Astrophysics Data System (ADS)

McGillis, W. R.; Jacobson, G.; Culligan, P.; Gaffin, S.; Carson, T.; Marasco, D.; Hsueh, D.; Rella, C.

2012-04-01

The budgets of heat, water, and GHGs from greenroofs in New York City, needed for adaptation and sustainable policy and infrastructure strategies, requires an accurate measure of their surface emissions. A high speed, Cavity Ring-Down Spectroscopy (CRDS) based analyzer for measuring carbon dioxide (CO2), methane (CH4) and water (H2O) and an ultrasonic wind and temperature anemometer for measuring heat and momentum is used to assess greenroof performance during seasonal, diurnal, and episodic weather conditions. The flux instrument has proven capable of raw 10 Hz precision (one standard deviation) better than 110 parts-per-billion (ppbv) for carbon dioxide, better than 3 ppbv for methane and better than 6 ppmv +0.3% of reading for water vapor. In the water and heat budget, comparison and reconciliation of greenroof evapotranspiration (ET) using micrometeorological techniques, water balance, and heat balance was conducted. The water balance (month timescales), the heat balance (week timescale) show agreement to the micrometeorological surface ET (hour timescale). By using boundary layer flux measurements of ET, the fundamental performance of greenroofs on climate and weather conditions can be explored. These boundary layer measured surface fluxes provide critical information on the physiology of the built environment in New York City. Faced with sewage failures due to water management and exacerbated heating, the accurate assessment of greenroof performance on high spatial and temporal scales in required for the urban environment. Results will be presented and discussed.

Micro-Pressure Sensors for Future Mars Missions

NASA Technical Reports Server (NTRS)

Catling, David C.

1996-01-01

The joint research interchange effort was directed at the following principal areas: u further development of NASA-Ames' Mars Micro-meteorology mission concept as a viable NASA space mission especially with regard to the science and instrument specifications u interaction with the flight team from NASA's New Millennium 'Deep-Space 2' (DS-2) mission with regard to selection and design of micro-pressure sensors for Mars u further development of micro-pressure sensors suitable for Mars The research work undertaken in the course of the Joint Research Interchange should be placed in the context of an ongoing planetary exploration objective to characterize the climate system on Mars. In particular, a network of small probes globally-distributed on the surface of the planet has often been cited as the only way to address this particular science goal. A team from NASA Ames has proposed such a mission called the Micrometeorology mission, or 'Micro-met' for short. Surface pressure data are all that are required, in principle, to calculate the Martian atmospheric circulation, provided that simultaneous orbital measurements of the atmosphere are also obtained. Consequently, in the proposed Micro-met mission a large number of landers would measure barometric pressure at various locations around Mars, each equipped with a micro-pressure sensor. Much of the time on the JRI was therefore spent working with the engineers and scientists concerned with Micro-met to develop this particular mission concept into a more realistic proposition.

A model of the ground surface temperature for micrometeorological analysis

NASA Astrophysics Data System (ADS)

Leaf, Julian S.; Erell, Evyatar

2017-07-01

Micrometeorological models at various scales require ground surface temperature, which may not always be measured in sufficient spatial or temporal detail. There is thus a need for a model that can calculate the surface temperature using only widely available weather data, thermal properties of the ground, and surface properties. The vegetated/permeable surface energy balance (VP-SEB) model introduced here requires no a priori knowledge of soil temperature or moisture at any depth. It combines a two-layer characterization of the soil column following the heat conservation law with a sinusoidal function to estimate deep soil temperature, and a simplified procedure for calculating moisture content. A physically based solution is used for each of the energy balance components allowing VP-SEB to be highly portable. VP-SEB was tested using field data measuring bare loess desert soil in dry weather and following rain events. Modeled hourly surface temperature correlated well with the measured data (r 2 = 0.95 for a whole year), with a root-mean-square error of 2.77 K. The model was used to generate input for a pedestrian thermal comfort study using the Index of Thermal Stress (ITS). The simulation shows that the thermal stress on a pedestrian standing in the sun on a fully paved surface, which may be over 500 W on a warm summer day, may be as much as 100 W lower on a grass surface exposed to the same meteorological conditions.

Intermediate time scale response of atmospheric CO 2 following prescribed fire in a longleaf pine forest

DOE PAGES

Viner, Brian; Parker, M.; Maze, G.; ...

2016-10-12

Fire plays an essential role in maintaining the structure and function of longleaf pine ecosystems. While the effects of fire on carbon cycle have been measured in previous studies for short periods during a burn and for multiyear periods following the burn, information on how carbon cycle is influenced by such changes over the span of a few weeks to months has yet to be quantified. We have analyzed high-frequency measurements of CO 2 concentration and flux, as well as associated micrometeorological variables, at three levels of the tall Aiken AmeriFlux tower during and after a prescribed burn. Measurements ofmore » the CO 2 concentration and vertical fluxes were examined as well as calculated net ecosystem exchange (NEE) for periods prior to and after the burn. Large spikes in both CO 2 concentration and CO 2 flux during the fire and increases in atmospheric CO 2 concentration and reduced CO 2 flux were observed for several weeks following the burn, particularly below the forest canopy. Both CO 2 measurements and NEE were found to return to their preburn states within 60–90 days following the burn when no statistical significance was found between preburn and postburn NEE. Furthermore, this study examines the micrometeorological conditions during a low-intensity prescribed burn and its short-term effects on local CO 2 dynamics in a forested environment by identifying observable impacts on local measurements of atmospheric CO 2 concentration and fluxes.« less

Effects of street canyon design on pedestrian thermal comfort in the hot-humid area of China.

PubMed

Zhang, Yufeng; Du, Xiaohan; Shi, Yurong

2017-08-01

The design characteristics of street canyons were investigated in Guangzhou in the hot-humid area of China, and the effects of the design factors and their interactions on pedestrian thermal comfort were studied by numerical simulations. The ENVI-met V4.0 (BASIC) model was validated by field observations and used to simulate the micrometeorological conditions and the standard effective temperature (SET) at pedestrian level of the street canyons for a typical summer day of Guangzhou. The results show that the micrometeorological parameters of mean radiant temperature (MRT) and wind speed play key roles in pedestrian thermal comfort. Street orientation has the largest contribution on SET at pedestrian level, followed by aspect ratio and greenery, while surface albedo and interactions between factors have small contributions. The street canyons oriented southeast-northwest or with a higher aspect ratio provide more shade, higher wind speed, and better thermal comfort conditions for pedestrians. Compared with the east-west-oriented street canyons, the north-south-oriented street canyons have higher MRTs and worse pedestrian thermal comfort due to their wider building spacing along the street. The effects of greenery change with the road width and the time of the day. Street canyon design is recommended to improve pedestrian thermal comfort. This study provides a better understanding of the effects of street canyon design on pedestrian thermal comfort and is a useful guide on urban design for the hot-humid area of China.

Outdoor thermal comfort in public space in warm-humid Guayaquil, Ecuador.

PubMed

Johansson, Erik; Yahia, Moohammed Wasim; Arroyo, Ivette; Bengs, Christer

2018-03-01

The thermal environment outdoors affects human comfort and health. Mental and physical performance is reduced at high levels of air temperature being a problem especially in tropical climates. This paper deals with human comfort in the warm-humid city of Guayaquil, Ecuador. The main aim was to examine the influence of urban micrometeorological conditions on people's subjective thermal perception and to compare it with two thermal comfort indices: the physiologically equivalent temperature (PET) and the standard effective temperature (SET*). The outdoor thermal comfort was assessed through micrometeorological measurements of air temperature, humidity, mean radiant temperature and wind speed together with a questionnaire survey consisting of 544 interviews conducted in five public places of the city during both the dry and rainy seasons. The neutral and preferred values as well as the upper comfort limits of PET and SET* were determined. For both indices, the neutral values and upper thermal comfort limits were lower during the rainy season, whereas the preferred values were higher during the rainy season. Regardless of season, the neutral values of PET and SET* are above the theoretical neutral value of each index. The results show that local people accept thermal conditions which are above acceptable comfort limits in temperate climates and that the subjective thermal perception varies within a wide range. It is clear, however, that the majority of the people in Guayaquil experience the outdoor thermal environment during daytime as too warm, and therefore, it is important to promote an urban design which creates shade and ventilation.

Intermediate time scale response of atmospheric CO2 following prescribed fire in a longleaf pine forest

NASA Astrophysics Data System (ADS)

Viner, B.; Parker, M.; Maze, G.; Varnedoe, P.; Leclerc, M.; Starr, G.; Aubrey, D.; Zhang, G.; Duarte, H.

2016-10-01

Fire plays an essential role in maintaining the structure and function of longleaf pine ecosystems. While the effects of fire on carbon cycle have been measured in previous studies for short periods during a burn and for multiyear periods following the burn, information on how carbon cycle is influenced by such changes over the span of a few weeks to months has yet to be quantified. We have analyzed high-frequency measurements of CO2 concentration and flux, as well as associated micrometeorological variables, at three levels of the tall Aiken AmeriFlux tower during and after a prescribed burn. Measurements of the CO2 concentration and vertical fluxes were examined as well as calculated net ecosystem exchange (NEE) for periods prior to and after the burn. Large spikes in both CO2 concentration and CO2 flux during the fire and increases in atmospheric CO2 concentration and reduced CO2 flux were observed for several weeks following the burn, particularly below the forest canopy. Both CO2 measurements and NEE were found to return to their preburn states within 60-90 days following the burn when no statistical significance was found between preburn and postburn NEE. This study examines the micrometeorological conditions during a low-intensity prescribed burn and its short-term effects on local CO2 dynamics in a forested environment by identifying observable impacts on local measurements of atmospheric CO2 concentration and fluxes.

A Mars Micro-Meteorological Station Mission

NASA Technical Reports Server (NTRS)

Merrihew, Steven C.; Haberle, Robert; Lemke, Lawrence G.

1995-01-01

The Mars Micro-Meteorological Station (Micro-Met) Mission is designed to provide the global surface pressure measurements required to help characterize the martian general circulation and climate system. Measurements of surface pressure distributed both spatially and temporally, coupled with simultaneous measurements from orbit, will enable the determination of the general circulation, structure and driving factors of the martian atmosphere as well as the seasonal CO2 cycle. The influence of these atmospheric factors will in turn provide insight into the overall martian climate system. With the science objective defined as the long term (at least one Mars year) globally distributed measurement of surface atmospheric pressure, a straightforward, near term and low cost network mission has been designed. The Micro-Met mission utilizes a unique silicon micro-machined pressure sensor coupled with a robust and lightweight surface station to deliver to Mars 16 Micro-Met stations via a Med-Lite launch vehicle. The battery powered Micro-Met surface stations are designed to autonomously measure, record and transmit the science data via a UHF relay satellite. Entry, descent and landing is provided by an aeroshell with a new lightweight ceramic thermal protection system, a parachute and an impact absorbing structure. The robust lander is capable of surviving the landing loads imposed by the high altitude landing sites required in a global network. By trading the ability to make many measurements at a single site for the ability to make a single measurement at several sites, the Micro-Met mission design satisfies the requirement for truly global meteorological science.

A feasible DY conjugate gradient method for linear equality constraints

NASA Astrophysics Data System (ADS)

LI, Can

2017-09-01

In this paper, we propose a feasible conjugate gradient method for solving linear equality constrained optimization problem. The method is an extension of the Dai-Yuan conjugate gradient method proposed by Dai and Yuan to linear equality constrained optimization problem. It can be applied to solve large linear equality constrained problem due to lower storage requirement. An attractive property of the method is that the generated direction is always feasible and descent direction. Under mild conditions, the global convergence of the proposed method with exact line search is established. Numerical experiments are also given which show the efficiency of the method.

Eddy covariance measurement of CO2 flux to the atmosphere from a area of high volcanogenic emissions, Mammoth Mountain, California

USGS Publications Warehouse

Anderson, D.E.; Farrar, C.D.

2001-01-01

Three pilot studies were performed to assess application of the eddy covariance micrometeorological method in the measurement of carbon dioxide (CO2) flux of volcanic origin. The selected study area is one of high diffuse CO2 emission on Mammoth Mountain, CA. Because terrain and source characteristics make this a complex setting for this type of measurement, added consideration was given to source area and upwind fetch. Footprint analysis suggests that the eddy covariance measurements were representative of an upwind elliptical source area (3.8 ?? 103 m2) which can vary with mean wind direction, surface roughness, and atmospheric stability. CO2 flux averaged 8-16 mg m-2 s-1 (0.7-1.4 kg m-2 day-1). Eddy covariance measurements of flux were compared with surface chamber measurements made in separate studies [Geophys. Res. Lett. 25 (1998a) 1947; EOS Trans. 79 (1998) F941.] and were found to be similar. ?? 2001 Elsevier Science B.V. All rights reserved.

Toward relaxed eddy accumulation measurements of sediment-water exchange in aquatic ecosystems

NASA Astrophysics Data System (ADS)

Lemaire, Bruno J.; Noss, Christian; Lorke, Andreas

2017-09-01

Solute transport across the sediment-water interface has major implications for water quality and biogeochemical cycling in aquatic ecosystems. Existing measurement techniques, however, are not capable of resolving sediment-water fluxes of most constituents under in situ flow conditions. We investigated whether relaxed eddy accumulation (REA), a micrometeorological technique with conditional sampling of turbulent updrafts and downdrafts, can be adapted to the aquatic environment. We simulated REA fluxes by reanalyzing eddy covariance measurements from a riverine lake. We found that the empirical coefficient that relates mass fluxes to the concentration difference between both REA samples is invariant with scalar and flow and responds as predicted by a joint Gaussian distribution of linearly correlated variables. Simulated REA fluxes differed on average by around 30% from eddy covariance fluxes (mean absolute error). Assessment of the lower quantification limit suggests that REA can potentially be applied for measuring benthic fluxes of a new range of constituents that cannot be assessed by standard eddy covariance methods.

Why we need to estimate the sampling uncertainty of eddy covariance flux measurement?

NASA Astrophysics Data System (ADS)

Kim, W.; Seo, H. H.

2015-12-01

Fruitful studies on exchanges of energy, water and carbon dioxide between the atmosphere and terrestrial ecosystem has been produced under a global network (http://fluxnet.ornl.gov). The exchange is defined by a flux, and in traditional the flux is estimated with eddy covariance (EC) method as a mean flux F for 30-min or 1-hr, because no techniques have been established for a direct measurement of a momentary flux itself. Therefore, the exchange analysis with F is to paid attention to estimations of spatial or temporal mean, because the exchange estimated by arithmetic mean Fa might be inappropriate in terms of the sample F used in this averaging having nonidentical inherent quality within one another in accordance with different micrometeorological and ecophysiological conditions while those are measured by the same instruments. To overcome this issue, we propose the weighted mean Fw using a relative sampling uncertainty ɛ estimated by a sampling F and its uncertainty, and introduce Fw performance tested with EC measurements for various sites.

Relationship between aerodynamic roughness length and bulk sedge leaf area index in a mixed-species boreal mire complex

NASA Astrophysics Data System (ADS)

Alekseychik, P. K.; Korrensalo, A.; Mammarella, I.; Vesala, T.; Tuittila, E.-S.

2017-06-01

Leaf area index (LAI) is an important parameter in natural ecosystems, representing the seasonal development of vegetation and photosynthetic potential. However, direct measurement techniques require labor-intensive field campaigns that are usually limited in time, while remote sensing approaches often do not yield reliable estimates. Here we propose that the bulk LAI of sedges (LAIs) can be estimated alternatively from a micrometeorological parameter, the aerodynamic roughness length for momentum (z0). z0 can be readily calculated from high-response turbulence and other meteorological data, typically measured continuously and routinely available at ecosystem research sites. The regressions of LAI versus z0 were obtained using the data from two Finnish natural sites representative of boreal fen and bog ecosystems. LAIs was found to be well correlated with z0 and sedge canopy height. Superior method performance was demonstrated in the fen ecosystem where the sedges make a bigger contribution to overall surface roughness than in bogs.

Measurements of CO{sub 2} fluxes and bubbles from a tower during ASGASEX

DOE Office of Scientific and Technical Information (OSTI.GOV)

Leeuw, G. de; Kunz, G.J.; Larsen, S.E.

1994-12-31

The Air-Sea Gas Exchange experiment ASGASEX was conducted from August 30 until October 1st from the Meetpost Noordwijk (MPN), a research tower in the North Sea at 9 km from the Dutch coast. The objective of ASGASEX was a study of parameters affecting the air-sea exchange of gases, and a comparison of experimental methods to derive the exchange coefficient for CO{sub 2}. A detailed description of the ASGASEX experiment is presented in Oost. The authors` contribution to ASGASEX was a micro-meteorological package to measure the fluxes of CO{sub 2}, momentum, heat and water vapor, and an instrument to measure themore » size distribution of bubbles just below the sea surface. In this contribution the authors report preliminary results from the CO{sub 2} flux measurements and the bubble measurements. The latter was made as part of a larger study on the influence of bubbles on gas exchange in cooperation with the University of Southampton and the University of Galway.« less

Adequacy of selected evapotranspiration approximations for hydrologic simulation

USGS Publications Warehouse

Sumner, D.M.

2006-01-01

Evapotranspiration (ET) approximations, usually based on computed potential ET (PET) and diverse PET-to-ET conceptualizations, are routinely used in hydrologic analyses. This study presents an approach to incorporate measured (actual) ET data, increasingly available using micrometeorological methods, to define the adequacy of ET approximations for hydrologic simulation. The approach is demonstrated at a site where eddy correlation-measured ET values were available. A baseline hydrologic model incorporating measured ET values was used to evaluate the sensitivity of simulated water levels, subsurface recharge, and surface runoff to error in four ET approximations. An annually invariant pattern of mean monthly vegetation coefficients was shown to be most effective, despite the substantial year-to-year variation in measured vegetation coefficients. The temporal variability of available water (precipitation minus ET) at the humid, subtropical site was largely controlled by the relatively high temporal variability of precipitation, benefiting the effectiveness of coarse ET approximations, a result that is likely to prevail at other humid sites.

Continuous multi-plot measurements of CO2, CH4, N2O and H2O in a managed boreal forest - The importance of accounting for all greenhouse gases

NASA Astrophysics Data System (ADS)

Vestin, P.; Mölder, M.; Sundqvist, E.; Båth, A.; Lehner, I.; Weslien, P.; Klemedtsson, L.; Lindroth, A.

2015-12-01

In order to assess the effects of different management practices on the exchange of greenhouse gases (GHG), it is desirable to perform repeated and parallel measurements on both experimental and control plots. Here we demonstrate how a system system combining eddy covariance and gradient techniques can be used to perform this assessment in a managed forest ecosystem.The net effects of clear-cutting and stump harvesting on GHG fluxes were studied at the ICOS site Norunda, Sweden. Micrometeorological measurements (i.e., flux-gradient measurements in 3 m tall towers) allowed for quantification of CO2, CH4 and H2O fluxes (from May 2010) as well as N2O and H2O fluxes (from June 2011) at two stump harvested plots and two control plots. There was one wetter and one drier plot of each treatment. Air was continuously sampled at two heights in the towers and gas concentrations were analyzed for CH4, CO2, H2O (LGR DLT-100, Los Gatos Research) and N2O, H2O (QCL Mini Monitor, Aerodyne Research). Friction velocities and sensible heat fluxes were measured by sonic anemometers (Gill Windmaster, Gill Instruments Ltd). Automatic chamber measurements (CO2, CH4, H2O) were carried out in the adjacent forest stand and at the clear-cut during 2010.Average CO2 emissions for the first year ranged between 14.4-20.2 ton CO2 ha-1 yr-1. The clear-cut became waterlogged after harvest and a comparison of flux-gradient data and chamber data (from the adjacent forest stand) indicated a switch from a weak CH4 sink to a significant source at all plots. The CH4 emissions ranged between 0.8-4.5 ton CO2-eq. ha-1 yr-1. N2O emissions ranged between 0.4-2.6 ton CO2-eq. ha-1 yr-1. Enhanced N2O emission on the drier stump harvested plot was the only clear treatment effect on GHG fluxes that was observed. Mean CH4 and N2O emissions for the first year of measurements amounted up to 29% and 20% of the mean annual CO2 emissions, respectively. This highlights the importance of including all GHGs when assessing the climate impacts of different forest management options. Our results show that continuous multi-plot measurements of the main GHGs are possible also at sites where GHG fluxes are low, at a reasonable cost and with reduced plot inter-comparison uncertainties.

Quantification of susceptibility change at high-concentrated SPIO-labeled target by characteristic phase gradient recognition.

PubMed

Zhu, Haitao; Nie, Binbin; Liu, Hua; Guo, Hua; Demachi, Kazuyuki; Sekino, Masaki; Shan, Baoci

2016-05-01

Phase map cross-correlation detection and quantification may produce highlighted signal at superparamagnetic iron oxide nanoparticles, and distinguish them from other hypointensities. The method may quantify susceptibility change by performing least squares analysis between a theoretically generated magnetic field template and an experimentally scanned phase image. Because characteristic phase recognition requires the removal of phase wrap and phase background, additional steps of phase unwrapping and filtering may increase the chance of computing error and enlarge the inconsistence among algorithms. To solve problem, phase gradient cross-correlation and quantification method is developed by recognizing characteristic phase gradient pattern instead of phase image because phase gradient operation inherently includes unwrapping and filtering functions. However, few studies have mentioned the detectable limit of currently used phase gradient calculation algorithms. The limit may lead to an underestimation of large magnetic susceptibility change caused by high-concentrated iron accumulation. In this study, mathematical derivation points out the value of maximum detectable phase gradient calculated by differential chain algorithm in both spatial and Fourier domain. To break through the limit, a modified quantification method is proposed by using unwrapped forward differentiation for phase gradient generation. The method enlarges the detectable range of phase gradient measurement and avoids the underestimation of magnetic susceptibility. Simulation and phantom experiments were used to quantitatively compare different methods. In vivo application performs MRI scanning on nude mice implanted by iron-labeled human cancer cells. Results validate the limit of detectable phase gradient and the consequent susceptibility underestimation. Results also demonstrate the advantage of unwrapped forward differentiation compared with differential chain algorithms for susceptibility quantification at high-concentrated iron accumulation. Copyright © 2015 Elsevier Inc. All rights reserved.

Iterative and multigrid methods in the finite element solution of incompressible and turbulent fluid flow

NASA Astrophysics Data System (ADS)

Lavery, N.; Taylor, C.

1999-07-01

Multigrid and iterative methods are used to reduce the solution time of the matrix equations which arise from the finite element (FE) discretisation of the time-independent equations of motion of the incompressible fluid in turbulent motion. Incompressible flow is solved by using the method of reduce interpolation for the pressure to satisfy the Brezzi-Babuska condition. The k-l model is used to complete the turbulence closure problem. The non-symmetric iterative matrix methods examined are the methods of least squares conjugate gradient (LSCG), biconjugate gradient (BCG), conjugate gradient squared (CGS), and the biconjugate gradient squared stabilised (BCGSTAB). The multigrid algorithm applied is based on the FAS algorithm of Brandt, and uses two and three levels of grids with a V-cycling schedule. These methods are all compared to the non-symmetric frontal solver. Copyright

A comparison of two closely-related approaches to aerodynamic design optimization

NASA Technical Reports Server (NTRS)

Shubin, G. R.; Frank, P. D.

1991-01-01

Two related methods for aerodynamic design optimization are compared. The methods, called the implicit gradient approach and the variational (or optimal control) approach, both attempt to obtain gradients necessary for numerical optimization at a cost significantly less than that of the usual black-box approach that employs finite difference gradients. While the two methods are seemingly quite different, they are shown to differ (essentially) in that the order of discretizing the continuous problem, and of applying calculus, is interchanged. Under certain circumstances, the two methods turn out to be identical. We explore the relationship between these methods by applying them to a model problem for duct flow that has many features in common with transonic flow over an airfoil. We find that the gradients computed by the variational method can sometimes be sufficiently inaccurate to cause the optimization to fail.

Joint design of large-tip-angle parallel RF pulses and blipped gradient trajectories.

PubMed

Cao, Zhipeng; Donahue, Manus J; Ma, Jun; Grissom, William A

2016-03-01

To design multichannel large-tip-angle kT-points and spokes radiofrequency (RF) pulses and gradient waveforms for transmit field inhomogeneity compensation in high field magnetic resonance imaging. An algorithm to design RF subpulse weights and gradient blip areas is proposed to minimize a magnitude least-squares cost function that measures the difference between realized and desired state parameters in the spin domain, and penalizes integrated RF power. The minimization problem is solved iteratively with interleaved target phase updates, RF subpulse weights updates using the conjugate gradient method with optimal control-based derivatives, and gradient blip area updates using the conjugate gradient method. Two-channel parallel transmit simulations and experiments were conducted in phantoms and human subjects at 7 T to demonstrate the method and compare it to small-tip-angle-designed pulses and circularly polarized excitations. The proposed algorithm designed more homogeneous and accurate 180° inversion and refocusing pulses than other methods. It also designed large-tip-angle pulses on multiple frequency bands with independent and joint phase relaxation. Pulses designed by the method improved specificity and contrast-to-noise ratio in a finger-tapping spin echo blood oxygen level dependent functional magnetic resonance imaging study, compared with circularly polarized mode refocusing. A joint RF and gradient waveform design algorithm was proposed and validated to improve large-tip-angle inversion and refocusing at ultrahigh field. © 2015 Wiley Periodicals, Inc.

A wet/wet differential pressure sensor for measuring vertical hydraulic gradient.

PubMed

Fritz, Brad G; Mackley, Rob D

2010-01-01

Vertical hydraulic gradient is commonly measured in rivers, lakes, and streams for studies of groundwater-surface water interaction. While a number of methods with subtle differences have been applied, these methods can generally be separated into two categories; measuring surface water elevation and pressure in the subsurface separately or making direct measurements of the head difference with a manometer. Making separate head measurements allows for the use of electronic pressure sensors, providing large datasets that are particularly useful when the vertical hydraulic gradient fluctuates over time. On the other hand, using a manometer-based method provides an easier and more rapid measurement with a simpler computation to calculate the vertical hydraulic gradient. In this study, we evaluated a wet/wet differential pressure sensor for use in measuring vertical hydraulic gradient. This approach combines the advantage of high-temporal frequency measurements obtained with instrumented piezometers with the simplicity and reduced potential for human-induced error obtained with a manometer board method. Our results showed that the wet/wet differential pressure sensor provided results comparable to more traditional methods, making it an acceptable method for future use.

New head gradient coil design and construction techniques

PubMed Central

Handler, William B; Harris, Chad T; Scholl, Timothy J; Parker, Dennis L; Goodrich, K Craig; Dalrymple, Brian; Van Sass, Frank; Chronik, Blaine A

2013-01-01

Purpose To design and build a head insert gradient coil to use in conjunction with body gradients for superior imaging. Materials and Methods The use of the Boundary Element Method to solve for a gradient coil wire pattern on an arbitrary surface has allowed us to incorporate engineering changes into the electromagnetic design of a gradient coil directly. Improved wire pattern design has been combined with robust manufacturing techniques and novel cooling methods. Results The finished coil had an efficiency of 0.15 mT/m/A in all three axes and allowed the imaging region to extend across the entire head and upper part of the neck. Conclusion The ability to adapt your electromagnetic design to necessary changes from an engineering perspective leads to superior coil performance. PMID:24123485

A modified form of conjugate gradient method for unconstrained optimization problems

NASA Astrophysics Data System (ADS)

Ghani, Nur Hamizah Abdul; Rivaie, Mohd.; Mamat, Mustafa

2016-06-01

Conjugate gradient (CG) methods have been recognized as an interesting technique to solve optimization problems, due to the numerical efficiency, simplicity and low memory requirements. In this paper, we propose a new CG method based on the study of Rivaie et al. [7] (Comparative study of conjugate gradient coefficient for unconstrained Optimization, Aus. J. Bas. Appl. Sci. 5(2011) 947-951). Then, we show that our method satisfies sufficient descent condition and converges globally with exact line search. Numerical results show that our proposed method is efficient for given standard test problems, compare to other existing CG methods.

Measuring herbicide volatilization from bare soil.

PubMed

Yates, S R

2006-05-15

A field experiment was conducted to measure surface dissipation and volatilization of the herbicide triallate after application to bare soil using micrometeorological, chamber, and soil-loss methods. The volatilization rate was measured continuously for 6.5 days and the range in the daily peak values for the integrated horizontal flux method was from 32.4 (day 5) to 235.2 g ha(-1) d(-1) (day 1), for the theoretical profile shape method was from 31.5 to 213.0 g ha(-1) d(-1), and for the flux chamber was from 15.7 to 47.8 g ha(-1) d(-1). Soil samples were taken within 30 min after application and the measured mass of triallate was 8.75 kg ha(-1). The measured triallate mass in the soil at the end of the experiment was approximately 6 kg ha(-1). The triallate dissipation rate, obtained by soil sampling, was approximately 334 g ha(-1) d(-1) (98 g d(-1)) and the average rate of volatilization was 361 g ha(-1) d(-1). Soil sampling at the end of the experiment showed that approximately 31% (0.803 kg/2.56 kg) of the triallate mass was lost from the soil. Significant volatilization of triallate is possible when applied directly to the soil surface without incorporation.

Coupling temporal and spatial gradient information in high-density unstructured Lagrangian measurements

NASA Astrophysics Data System (ADS)

Wong, Jaime G.; Rosi, Giuseppe A.; Rouhi, Amirreza; Rival, David E.

2017-10-01

Particle tracking velocimetry (PTV) produces high-quality temporal information that is often neglected when computing spatial gradients. A method is presented here to utilize this temporal information in order to improve the estimation of spatial gradients for spatially unstructured Lagrangian data sets. Starting with an initial guess, this method penalizes any gradient estimate where the substantial derivative of vorticity along a pathline is not equal to the local vortex stretching/tilting. Furthermore, given an initial guess, this method can proceed on an individual pathline without any further reference to neighbouring pathlines. The equivalence of the substantial derivative and vortex stretching/tilting is based on the vorticity transport equation, where viscous diffusion is neglected. By minimizing the residual of the vorticity-transport equation, the proposed method is first tested to reduce error and noise on a synthetic Taylor-Green vortex field dissipating in time. Furthermore, when the proposed method is applied to high-density experimental data collected with `Shake-the-Box' PTV, noise within the spatial gradients is significantly reduced. In the particular test case investigated here of an accelerating circular plate captured during a single run, the method acts to delineate the shear layer and vortex core, as well as resolve the Kelvin-Helmholtz instabilities, which were previously unidentifiable without the use of ensemble averaging. The proposed method shows promise for improving PTV measurements that require robust spatial gradients while retaining the unstructured Lagrangian perspective.

Longitudinal gradient coil optimization in the presence of transient eddy currents.

PubMed

Trakic, A; Liu, F; Lopez, H Sanchez; Wang, H; Crozier, S

2007-06-01

The switching of magnetic field gradient coils in magnetic resonance imaging (MRI) inevitably induces transient eddy currents in conducting system components, such as the cryostat vessel. These secondary currents degrade the spatial and temporal performance of the gradient coils, and compensation methods are commonly employed to correct for these distortions. This theoretical study shows that by incorporating the eddy currents into the coil optimization process, it is possible to modify a gradient coil design so that the fields created by the coil and the eddy currents combine together to generate a spatially homogeneous gradient that follows the input pulse. Shielded and unshielded longitudinal gradient coils are used to exemplify this novel approach. To assist in the evaluation of transient eddy currents induced within a realistic cryostat vessel, a low-frequency finite-difference time-domain (FDTD) method using the total-field scattered-field (TFSF) scheme was performed. The simulations demonstrate the effectiveness of the proposed method for optimizing longitudinal gradient fields while taking into account the spatial and temporal behavior of the eddy currents.

Systematic generation of buffer systems for pH gradient ion exchange chromatography and their application.

PubMed

Kröner, Frieder; Hubbuch, Jürgen

2013-04-12

pH gradient protein separations are widely used techniques in the field of protein analytics, of which isoelectric focusing is the most well known application. The chromatographic variant, based on the formation of pH gradients in ion exchange columns is only rarely applied due to the difficulties to form controllable, linear pH gradients over a broad pH range. This work describes a method for the systematic generation of buffer compositions with linear titration curves, resulting in well controllable pH gradients. To generate buffer compositions with linear titration curves an in silico method was successfully developed. With this tool, buffer compositions for pH gradient ion exchange chromatography with pH ranges spanning up to 7.5 pH units were established and successfully validated. Subsequently, the buffer systems were used to characterize the elution behavior of 22 different model proteins in cation and anion exchange pH gradient chromatography. The results of both chromatographic modes as well as isoelectric focusing were compared to describe differences in between the methods. Copyright © 2013 Elsevier B.V. All rights reserved.

Lower Nitrous Oxide Emissions from Anhydrous Ammonia Application Prior to Soil Freezing in Late Fall Than Spring Pre-Plant Application.

PubMed

Tenuta, Mario; Gao, Xiaopeng; Flaten, Donald N; Amiro, Brian D

2016-07-01

Fall application of anhydrous ammonia in Manitoba is common but its impact on nitrous oxide (NO) emissions is not well known. A 2-yr study compared application before freeze-up in late fall to spring pre-plant application of anhydrous ammonia on nitrous oxide (NO) emissions from a clay soil in the Red River Valley, Manitoba. Spring wheat ( L.) and corn ( L.) were grown on two 4-ha fields in 2011 and 2012, respectively. Field-scale flux of NO was measured using a flux-gradient micrometeorological approach. Late fall treatment did not induce NO emissions soon after application or in winter likely because soil was frozen. Application time did alter the temporal pattern of emissions with late fall and spring pre-plant applications significantly increasing median daily NO flux at spring thaw and early crop growing season, respectively. The majority of emissions occurred in early growing season resulting in cumulative emissions for the crop year being numerically 33% less for late fall than spring pre-plant application. Poor yield in the first year with late fall treatment occurred because of weed and volunteer growth with delayed planting. Results show late fall application of anhydrous ammonia before freeze-up increased NO emissions at thaw and decreased emissions for the early growing season compared to spring pre-plant application. However, improved nitrogen availability of late fall application to crops the following year is required when planting is delayed because of excessive moisture in spring. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Using Riverboat-Mounted Eddy Covariance for Direct Measurements of Air-water Gas Exchange in Amazonia

NASA Astrophysics Data System (ADS)

Miller, S. D.; Freitas, H.; Read, E.; Goulden, M. L.; Rocha, H.

2007-12-01

Gas evasion from Amazonian rivers and lakes to the atmosphere has been estimated to play an important role in the regional budget of carbon dioxide (Richey et al., 2002) and the global budget of methane (Melack et al., 2004). These flux estimates were calculated by combining remote sensing estimates of inundation area with water-side concentration gradients and gas transfer rates (piston velocities) estimated primarily from floating chamber measurements (footprint ~1 m2). The uncertainty in these fluxes was large, attributed primarily to uncertainty in the gas exchange parameterization. Direct measurements of the gas exchange coefficient are needed to improve the parameterizations in these environments, and therefore reduce the uncertainty in fluxes. The micrometeorological technique of eddy covariance is attractive since it is a direct measurement of gas exchange that samples over a much larger area than floating chambers, and is amenable to use from a moving platform. We present eddy covariance carbon dioxide exchange measurements made using a small riverboat in rivers and lakes in the central Amazon near Santarem, Para, Brazil. Water-side carbon dioxide concentration was measured in situ, and the gas exchange coefficient was calculated. We found the piston velocity at a site on the Amazon River to be similar to existing ocean-based parameterizations, whereas the piston velocity at a site on the Tapajos River was roughly a factor 5 higher. We hypothesize that the enhanced gas exchange at the Tapajos site was due to a shallow upwind fetch. Our results demonstrate the feasibility of boat-based eddy covariance on these rivers, and also the utility of a mobile platform to investigate spatial variability of gas exchange.

Calibration of a rotating accelerometer gravity gradiometer using centrifugal gradients

NASA Astrophysics Data System (ADS)

Yu, Mingbiao; Cai, Tijing

2018-05-01

The purpose of this study is to calibrate scale factors and equivalent zero biases of a rotating accelerometer gravity gradiometer (RAGG). We calibrate scale factors by determining the relationship between the centrifugal gradient excitation and RAGG response. Compared with calibration by changing the gravitational gradient excitation, this method does not need test masses and is easier to implement. The equivalent zero biases are superpositions of self-gradients and the intrinsic zero biases of the RAGG. A self-gradient is the gravitational gradient produced by surrounding masses, and it correlates well with the RAGG attitude angle. We propose a self-gradient model that includes self-gradients and the intrinsic zero biases of the RAGG. The self-gradient model is a function of the RAGG attitude, and it includes parameters related to surrounding masses. The calibration of equivalent zero biases determines the parameters of the self-gradient model. We provide detailed procedures and mathematical formulations for calibrating scale factors and parameters in the self-gradient model. A RAGG physical simulation system substitutes for the actual RAGG in the calibration and validation experiments. Four point masses simulate four types of surrounding masses producing self-gradients. Validation experiments show that the self-gradients predicted by the self-gradient model are consistent with those from the outputs of the RAGG physical simulation system, suggesting that the presented calibration method is valid.

Ground-Based Robotic Sensing of an Agricultural Sub-Canopy Environment

NASA Astrophysics Data System (ADS)

Burns, A.; Peschel, J.

2015-12-01

Airborne remote sensing is a useful method for measuring agricultural crop parameters over large areas; however, the approach becomes limited to above-canopy characterization as a crop matures due to reduced visual access of the sub-canopy environment. During the growth cycle of an agricultural crop, such as soybeans, the micrometeorology of the sub-canopy environment can significantly impact pod development and reduced yields may result. Larger-scale environmental conditions aside, the physical structure and configuration of the sub-canopy matrix will logically influence local climate conditions for a single plant; understanding the state and development of the sub-canopy could inform crop models and improve best practices but there are currently no low-cost methods to quantify the sub-canopy environment at a high spatial and temporal resolution over an entire growth cycle. This work describes the modification of a small tactical and semi-autonomous, ground-based robotic platform with sensors capable of mapping the physical structure of an agricultural row crop sub-canopy; a soybean crop is used as a case study. Point cloud data representing the sub-canopy structure are stored in LAS format and can be used for modeling and visualization in standard GIS software packages.

Determination of the actual evapotranspiration by using remote sensing methods

NASA Astrophysics Data System (ADS)

Bora, Eser

2017-10-01

Evapotranspiration is so crucial for determining amount of the irrigation and the effective water management planning. Moreover, it is vital for determining agricultural drought management and determination the actual evapotranspiration ın a region is critical for early drought warning systems. The main object of this study was to assess accuracy of the remote sensing method (METRIC) by calibrating with the bowen ratio observations at the same time. The research was carried out in the west of Marmara Region, Turkey. Landsat 5 images was used to determine the metric algorithm. By using this algorithms are found. Landsat 5 images file were used to determine actual evapotranspiration and the image's date was June 11 in 2010. This date was used for calibration with available terrestrial observation by using bowen ratio in that time. Landsat images obtained from the web site, earthexplorer.usgs.gov, and results of bowen ratio taken from micrometeorology station. As a result, energy balance parameters that are net radiation, soil heat flux and latent heat flux were compared both metric algorithm and the bowen ration in the images time. The results are found so close to each other.

Summertime elemental mercury exchange of temperate grasslands on an ecosystem-scale

PubMed Central

Fritsche, J.; Wohlfahrt, G.; Ammann, C.; Zeeman, M.; Hammerle, A.; Obrist, D.; Alewell, C.

2013-01-01

In order to estimate the air-surface mercury exchange of grasslands in temperate climate regions, fluxes of gaseous elemental mercury (GEM) were measured at two sites in Switzerland and one in Austria during summer 2006. Two classic micrometeorological methods (aerodynamic and modified Bowen ratio) have been applied to estimate net GEM exchange rates and to determine the response of the GEM flux to changes in environmental conditions (e.g. heavy rain, summer ozone) on an ecosystem-scale. Both methods proved to be appropriate to estimate fluxes on time scales of a few hours and longer. Average dry deposition rates up to 4.3 ng m−2 h−1 and mean deposition velocities up to 0.10 cm s−1 were measured, which indicates that during the active vegetation period temperate grasslands are a small net sink for atmospheric mercury. With increasing ozone concentrations depletion of GEM was observed, but could not be quantified from the flux signal. Night-time deposition fluxes of GEM were measured and seem to be the result of mercury co-deposition with condensing water. Effects of grass cuts could also be observed, but were of minor magnitude. PMID:24348525

Methods for Fabricating Gradient Alloy Articles with Multi-Functional Properties

NASA Technical Reports Server (NTRS)

Hofmann, Douglas C. (Inventor); Suh, Eric J. (Inventor); Borgonia, John Paul C. (Inventor); Dillon, Robert P. (Inventor); Mulder, Jerry L. (Inventor); Gardner, Paul B. (Inventor)

2015-01-01

Systems and methods for fabricating multi-functional articles comprised of additively formed gradient materials are provided. The fabrication of multi-functional articles using the additive deposition of gradient alloys represents a paradigm shift from the traditional way that metal alloys and metal/metal alloy parts are fabricated. Since a gradient alloy that transitions from one metal to a different metal cannot be fabricated through any conventional metallurgy techniques, the technique presents many applications. Moreover, the embodiments described identify a broad range of properties and applications.

An improved silver staining procedure for schizodeme analysis in polyacrylamide gradient gels.

PubMed

Gonçalves, A M; Nehme, N S; Morel, C M

1990-01-01

A simple protocol is described for the silver staining of polyacrylamide gradient gels used for the separation of restriction fragments of kinetoplast DNA [schizodeme analysis of trypanosomatids (Morel et al., 1980)]. The method overcomes the problems of non-uniform staining and strong background color which are frequently encountered when conventional protocols for silver staining of linear gels are applied to gradient gels. The method described has proven to be of general applicability for DNA, RNA and protein separations in gradient gels.

Limited-memory trust-region methods for sparse relaxation

NASA Astrophysics Data System (ADS)

Adhikari, Lasith; DeGuchy, Omar; Erway, Jennifer B.; Lockhart, Shelby; Marcia, Roummel F.

2017-08-01

In this paper, we solve the l2-l1 sparse recovery problem by transforming the objective function of this problem into an unconstrained differentiable function and applying a limited-memory trust-region method. Unlike gradient projection-type methods, which uses only the current gradient, our approach uses gradients from previous iterations to obtain a more accurate Hessian approximation. Numerical experiments show that our proposed approach eliminates spurious solutions more effectively while improving computational time.

Measurement of DDT fluxes from a historically treated agricultural soil in Canada.

PubMed

Kurt-Karakus, Perihan Binnur; Bidleman, Terry F; Staebler, Ralf M; Jones, Kevin C

2006-08-01

Organocohlorine pesticide (OCP) residues in agricultural soils are of concern due to the uptake of these compounds by crops, accumulation in the foodchain, and reemission from soils to the atmosphere. Although it has been about three decades since DDT was banned for agricultural uses in Canada, residues persist in soils of some agricultural areas. Emission of DDT compounds to the atmosphere from a historically treated field in southern Ontario was determined in fall 2004 and spring 2005. The sigmaDDTs concentration in the high organic matter (71%) soil was 19 +/- 4 microg g(-1) dry weight. Concentration gradients in the air were measured at 5, 20, 72, and 200 cm above soil using glass fiber filter-polyurethane foam cartridges. Air concentrations of sigmaDDTs averaged 5.7 +/- 5.1 ng m(-3) at 5 cm and decreased to 1.3 +/- 0.8 ng m(-3) at 200 cm and were 60-300 times higher than levels measured at a background site 30 km away. Soil-air fugacity fractions, fs/(fs + fa), of p,p'-DDE, p,p'-DDD, and p,p'-DDT ranged from 0.42 to 0.91 using air concentrations measured above the soil and > or = 0.99 using background air concentrations, indicating that the soil was a net source to the background air. Fractionation of DDT compounds during volatilization was predicted using either liquid-phase vapor pressures (PL) or octanol-air partition coefficients (KOA). Relative emissions of p,p'-DDE and p,p'-DDT were better described by PL than KOA, whereas either PL or KOA successfully accounted for the fractionation of p,p'-DDT and o,p'-DDT. Soil-to-air fluxes were calculated from air concentration gradients and turbulent exchange coefficients determined from micrometeorological measurements. Average fluxes of sigmaDDTs were 90 +/- 24 ng m(-2) h(-1) in fall and 660 +/- 370 ng m(-2) h(-1) in spring. Higher soil temperatures in spring accounted for the higher fluxes. A volatilization half-life of approximately 200 y was estimated for sigmaDDT in the upper 5 cm of the soil column, assuming the average flux rate for 12 h d-(1) over 8 months of the year. Thus, in the absence of other dissipation processes, the soil will continue to be a source of atmospheric contamination for a very long time.

Evaluation of multiple tracer methods to estimate low groundwater flow velocities.

PubMed

Reimus, Paul W; Arnold, Bill W

2017-04-01

Four different tracer methods were used to estimate groundwater flow velocity at a multiple-well site in the saturated alluvium south of Yucca Mountain, Nevada: (1) two single-well tracer tests with different rest or "shut-in" periods, (2) a cross-hole tracer test with an extended flow interruption, (3) a comparison of two tracer decay curves in an injection borehole with and without pumping of a downgradient well, and (4) a natural-gradient tracer test. Such tracer methods are potentially very useful for estimating groundwater velocities when hydraulic gradients are flat (and hence uncertain) and also when water level and hydraulic conductivity data are sparse, both of which were the case at this test location. The purpose of the study was to evaluate the first three methods for their ability to provide reasonable estimates of relatively low groundwater flow velocities in such low-hydraulic-gradient environments. The natural-gradient method is generally considered to be the most robust and direct method, so it was used to provide a "ground truth" velocity estimate. However, this method usually requires several wells, so it is often not practical in systems with large depths to groundwater and correspondingly high well installation costs. The fact that a successful natural gradient test was conducted at the test location offered a unique opportunity to compare the flow velocity estimates obtained by the more easily deployed and lower risk methods with the ground-truth natural-gradient method. The groundwater flow velocity estimates from the four methods agreed very well with each other, suggesting that the first three methods all provided reasonably good estimates of groundwater flow velocity at the site. The advantages and disadvantages of the different methods, as well as some of the uncertainties associated with them are discussed. Published by Elsevier B.V.

What is the best way to contour lung tumors on PET scans? Multiobserver validation of a gradient-based method using a NSCLC digital PET phantom.

PubMed

Werner-Wasik, Maria; Nelson, Arden D; Choi, Walter; Arai, Yoshio; Faulhaber, Peter F; Kang, Patrick; Almeida, Fabio D; Xiao, Ying; Ohri, Nitin; Brockway, Kristin D; Piper, Jonathan W; Nelson, Aaron S

2012-03-01

To evaluate the accuracy and consistency of a gradient-based positron emission tomography (PET) segmentation method, GRADIENT, compared with manual (MANUAL) and constant threshold (THRESHOLD) methods. Contouring accuracy was evaluated with sphere phantoms and clinically realistic Monte Carlo PET phantoms of the thorax. The sphere phantoms were 10-37 mm in diameter and were acquired at five institutions emulating clinical conditions. One institution also acquired a sphere phantom with multiple source-to-background ratios of 2:1, 5:1, 10:1, 20:1, and 70:1. One observer segmented (contoured) each sphere with GRADIENT and THRESHOLD from 25% to 50% at 5% increments. Subsequently, seven physicians segmented 31 lesions (7-264 mL) from 25 digital thorax phantoms using GRADIENT, THRESHOLD, and MANUAL. For spheres <20 mm in diameter, GRADIENT was the most accurate with a mean absolute % error in diameter of 8.15% (10.2% SD) compared with 49.2% (51.1% SD) for 45% THRESHOLD (p < 0.005). For larger spheres, the methods were statistically equivalent. For varying source-to-background ratios, GRADIENT was the most accurate for spheres >20 mm (p < 0.065) and <20 mm (p < 0.015). For digital thorax phantoms, GRADIENT was the most accurate (p < 0.01), with a mean absolute % error in volume of 10.99% (11.9% SD), followed by 25% THRESHOLD at 17.5% (29.4% SD), and MANUAL at 19.5% (17.2% SD). GRADIENT had the least systematic bias, with a mean % error in volume of -0.05% (16.2% SD) compared with 25% THRESHOLD at -2.1% (34.2% SD) and MANUAL at -16.3% (20.2% SD; p value <0.01). Interobserver variability was reduced using GRADIENT compared with both 25% THRESHOLD and MANUAL (p value <0.01, Levene's test). GRADIENT was the most accurate and consistent technique for target volume contouring. GRADIENT was also the most robust for varying imaging conditions. GRADIENT has the potential to play an important role for tumor delineation in radiation therapy planning and response assessment. Copyright © 2012. Published by Elsevier Inc.

Estimating Emissions of Ammonia and Methane from an Anaerobic Livestock Lagoon Using Micrometeorological Methods and Inverse Modeling

NASA Astrophysics Data System (ADS)

Shonkwiler, K. B.; Ham, J. M.; Williams, C.

2012-12-01

Evaluating the impact of increased carbon and nitrogen emissions on local air quality and regional bionetworks due to animal agricultural activity is of great interest to the public, political, economic and ecological welfare of areas within the scope of these practices. Globally, livestock operations account for 64% of annual anthropogenic emissions of ammonia (NH3) [1]. Concerning methane (CH4), anaerobic lagoons from commercial dairy operations contribute the second largest share of CH4 emissions from manure in the United States[1], and additionally are a local source of NH3 as well. Anaerobic lagoons are commonly used in commercial animal agriculture and as significant local sources of greenhouse gases (GHG), there is a strong need to quantify GHG emissions from these systems. In 2012 at a commercial dairy operation in Northern Colorado, USA, measurements of CH4 were made using eddy covariance (EC), while NH3 was estimated using a combination of real-time monitoring (cavity ring-down spectroscopy as well as time-integrated passive samplers). Methane emissions have been measured at this lagoon using EC since 2011, with fluxes ranging from 0.5 mg m-2 s-1 in early summer to >2 mg m-2 s-1 in late summer and early fall. Concentration data of both CH4 and NH3 were used to estimate emissions using a 2-dimensional inverse model based on solving the advection-diffusion equation[2]. In the case of the CH4-EC data, results from the inverse model were compared with the EC-derived flux estimates for enhanced parameterization of surface geometry within the lagoon environment. The model was then applied using measured NH3 concentrations to achieve emissions estimates. While NH3 fluxes from the lagoon tend to be much lower than those of CH4 by comparison, modeling emissions of NH3 from the simple geometry of a lagoon will assist in applying the model to more complex surfaces. [1] FAO, 2006. Livestock's long shadow: Environmental issues and options. Livestock, Environment, and Development Initiative. Food and Agriculture Organization of the United Nations, Rome, Italy. [2] Loubet, B., Génermont, S., Ferrara, R., Bedos, C., Decuq, C., Personne, E., Fanucci, O., Durand, B., Rana, G., Cellier, P., 2010. An inverse model to estimate ammonia emissions from fields. Eur. J. Soil Sci. 61: 793-805. Panorama of a weather station (left) utilizing micrometeorological methods to aid in estimating emissions of methane and ammonia from an anaerobic livestock lagoon (center) at a commercial dairy in Northern Colorado, USA.

BLIPPED (BLIpped Pure Phase EncoDing) high resolution MRI with low amplitude gradients

NASA Astrophysics Data System (ADS)

Xiao, Dan; Balcom, Bruce J.

2017-12-01

MRI image resolution is proportional to the maximum k-space value, i.e. the temporal integral of the magnetic field gradient. High resolution imaging usually requires high gradient amplitudes and/or long spatial encoding times. Special gradient hardware is often required for high amplitudes and fast switching. We propose a high resolution imaging sequence that employs low amplitude gradients. This method was inspired by the previously proposed PEPI (π Echo Planar Imaging) sequence, which replaced EPI gradient reversals with multiple RF refocusing pulses. It has been shown that when the refocusing RF pulse is of high quality, i.e. sufficiently close to 180°, the magnetization phase introduced by the spatial encoding magnetic field gradient can be preserved and transferred to the following echo signal without phase rewinding. This phase encoding scheme requires blipped gradients that are identical for each echo, with low and constant amplitude, providing opportunities for high resolution imaging. We now extend the sequence to 3D pure phase encoding with low amplitude gradients. The method is compared with the Hybrid-SESPI (Spin Echo Single Point Imaging) technique to demonstrate the advantages in terms of low gradient duty cycle, compensation of concomitant magnetic field effects and minimal echo spacing, which lead to superior image quality and high resolution. The 3D imaging method was then applied with a parallel plate resonator RF probe, achieving a nominal spatial resolution of 17 μm in one dimension in the 3D image, requiring a maximum gradient amplitude of only 5.8 Gauss/cm.

An historical survey of computational methods in optimal control.

NASA Technical Reports Server (NTRS)

Polak, E.

1973-01-01

Review of some of the salient theoretical developments in the specific area of optimal control algorithms. The first algorithms for optimal control were aimed at unconstrained problems and were derived by using first- and second-variation methods of the calculus of variations. These methods have subsequently been recognized as gradient, Newton-Raphson, or Gauss-Newton methods in function space. A much more recent addition to the arsenal of unconstrained optimal control algorithms are several variations of conjugate-gradient methods. At first, constrained optimal control problems could only be solved by exterior penalty function methods. Later algorithms specifically designed for constrained problems have appeared. Among these are methods for solving the unconstrained linear quadratic regulator problem, as well as certain constrained minimum-time and minimum-energy problems. Differential-dynamic programming was developed from dynamic programming considerations. The conditional-gradient method, the gradient-projection method, and a couple of feasible directions methods were obtained as extensions or adaptations of related algorithms for finite-dimensional problems. Finally, the so-called epsilon-methods combine the Ritz method with penalty function techniques.

Performance comparison of a new hybrid conjugate gradient method under exact and inexact line searches

NASA Astrophysics Data System (ADS)

Ghani, N. H. A.; Mohamed, N. S.; Zull, N.; Shoid, S.; Rivaie, M.; Mamat, M.

2017-09-01

Conjugate gradient (CG) method is one of iterative techniques prominently used in solving unconstrained optimization problems due to its simplicity, low memory storage, and good convergence analysis. This paper presents a new hybrid conjugate gradient method, named NRM1 method. The method is analyzed under the exact and inexact line searches in given conditions. Theoretically, proofs show that the NRM1 method satisfies the sufficient descent condition with both line searches. The computational result indicates that NRM1 method is capable in solving the standard unconstrained optimization problems used. On the other hand, the NRM1 method performs better under inexact line search compared with exact line search.

Gradient Pre-Emphasis to Counteract First-Order Concomitant Fields on Asymmetric MRI Gradient Systems

PubMed Central

Tao, Shengzhen; Weavers, Paul T.; Trzasko, Joshua D.; Shu, Yunhong; Huston, John; Lee, Seung-Kyun; Frigo, Louis M.; Bernstein, Matt A.

2016-01-01

PURPOSE To develop a gradient pre-emphasis scheme that prospectively counteracts the effects of the first-order concomitant fields for any arbitrary gradient waveform played on asymmetric gradient systems, and to demonstrate the effectiveness of this approach using a real-time implementation on a compact gradient system. METHODS After reviewing the first-order concomitant fields that are present on asymmetric gradients, a generalized gradient pre-emphasis model assuming arbitrary gradient waveforms is developed to counteract their effects. A numerically straightforward, simple to implement approximate solution to this pre-emphasis problem is derived, which is compatible with the current hardware infrastructure used on conventional MRI scanners for eddy current compensation. The proposed method was implemented on the gradient driver sub-system, and its real-time use was tested using a series of phantom and in vivo data acquired from 2D Cartesian phase-difference, echo-planar imaging (EPI) and spiral acquisitions. RESULTS The phantom and in vivo results demonstrate that unless accounted for, first-order concomitant fields introduce considerable phase estimation error into the measured data and result in images exhibiting spatially dependent blurring/distortion. The resulting artifacts are effectively prevented using the proposed gradient pre-emphasis. CONCLUSION An efficient and effective gradient pre-emphasis framework is developed to counteract the effects of first-order concomitant fields of asymmetric gradient systems. PMID:27373901

Testing thermal gradient driving force for grain boundary migration using molecular dynamics simulations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bai, Xian-Ming; Zhang, Yongfeng; Tonks, Michael R.

2015-02-01

Strong thermal gradients in low-thermal-conductivity ceramics may drive extended defects, such as grain boundaries and voids, to migrate in preferential directions. In this work, molecular dynamics simulations are conducted to study thermal gradient driven grain boundary migration and to verify a previously proposed thermal gradient driving force equation, using uranium dioxide as a model system. It is found that a thermal gradient drives grain boundaries to migrate up the gradient and the migration velocity increases under a constant gradient owing to the increase in mobility with temperature. Different grain boundaries migrate at very different rates due to their different intrinsicmore » mobilities. The extracted mobilities from the thermal gradient driven simulations are compared with those calculated from two other well-established methods and good agreement between the three different methods is found, demonstrating that the theoretical equation of the thermal gradient driving force is valid, although a correction of one input parameter should be made. The discrepancy in the grain boundary mobilities between modeling and experiments is also discussed.« less

Directional phytoscreening: contaminant gradients in trees for plume delineation.

PubMed

Limmer, Matt A; Shetty, Mikhil K; Markus, Samantha; Kroeker, Ryan; Parker, Beth L; Martinez, Camilo; Burken, Joel G

2013-08-20

Tree sampling methods have been used in phytoscreening applications to delineate contaminated soil and groundwater, augmenting traditional investigative methods that are time-consuming, resource-intensive, invasive, and costly. In the past decade, contaminant concentrations in tree tissues have been shown to reflect the extent and intensity of subsurface contamination. This paper investigates a new phytoscreening tool: directional tree coring, a concept originating from field data that indicated azimuthal concentrations in tree trunks reflected the concentration gradients in the groundwater around the tree. To experimentally test this hypothesis, large diameter trees were subjected to subsurface contaminant concentration gradients in a greenhouse study. These trees were then analyzed for azimuthal concentration gradients in aboveground tree tissues, revealing contaminant centroids located on the side of the tree nearest the most contaminated groundwater. Tree coring at three field sites revealed sufficiently steep contaminant gradients in trees reflected nearby groundwater contaminant gradients. In practice, trees possessing steep contaminant gradients are indicators of steep subsurface contaminant gradients, providing compass-like information about the contaminant gradient, pointing investigators toward higher concentration regions of the plume.

Application of augmented-Lagrangian methods in meteorology: Comparison of different conjugate-gradient codes for large-scale minimization

NASA Technical Reports Server (NTRS)

Navon, I. M.

1984-01-01

A Lagrange multiplier method using techniques developed by Bertsekas (1982) was applied to solving the problem of enforcing simultaneous conservation of the nonlinear integral invariants of the shallow water equations on a limited area domain. This application of nonlinear constrained optimization is of the large dimensional type and the conjugate gradient method was found to be the only computationally viable method for the unconstrained minimization. Several conjugate-gradient codes were tested and compared for increasing accuracy requirements. Robustness and computational efficiency were the principal criteria.

Boundedness and convergence of online gradient method with penalty for feedforward neural networks.

PubMed

Zhang, Huisheng; Wu, Wei; Liu, Fei; Yao, Mingchen

2009-06-01

In this brief, we consider an online gradient method with penalty for training feedforward neural networks. Specifically, the penalty is a term proportional to the norm of the weights. Its roles in the method are to control the magnitude of the weights and to improve the generalization performance of the network. By proving that the weights are automatically bounded in the network training with penalty, we simplify the conditions that are required for convergence of online gradient method in literature. A numerical example is given to support the theoretical analysis.

Computational methods for aerodynamic design using numerical optimization

NASA Technical Reports Server (NTRS)

Peeters, M. F.

1983-01-01

Five methods to increase the computational efficiency of aerodynamic design using numerical optimization, by reducing the computer time required to perform gradient calculations, are examined. The most promising method consists of drastically reducing the size of the computational domain on which aerodynamic calculations are made during gradient calculations. Since a gradient calculation requires the solution of the flow about an airfoil whose geometry was slightly perturbed from a base airfoil, the flow about the base airfoil is used to determine boundary conditions on the reduced computational domain. This method worked well in subcritical flow.

Iterative methods for elliptic finite element equations on general meshes

NASA Technical Reports Server (NTRS)

Nicolaides, R. A.; Choudhury, Shenaz

1986-01-01

Iterative methods for arbitrary mesh discretizations of elliptic partial differential equations are surveyed. The methods discussed are preconditioned conjugate gradients, algebraic multigrid, deflated conjugate gradients, an element-by-element techniques, and domain decomposition. Computational results are included.

Tailoring magnetic field gradient design to magnet cryostat geometry.

PubMed

Trakic, A; Liu, F; Lopez, H S; Wang, H; Crozier, S

2006-01-01

Eddy currents induced within a magnetic resonance imaging (MRI) cryostat bore during pulsing of gradient coils can be applied constructively together with the gradient currents that generate them, to obtain good quality gradient uniformities within a specified imaging volume over time. This can be achieved by simultaneously optimizing the spatial distribution and temporal pre-emphasis of the gradient coil current, to account for the spatial and temporal variation of the secondary magnetic fields due to the induced eddy currents. This method allows the tailored design of gradient coil/magnet configurations and consequent engineering trade-offs. To compute the transient eddy currents within a realistic cryostat vessel, a low-frequency finite-difference time-domain (FDTD) method using total-field scattered-field (TFSF) scheme has been performed and validated.

Structural optimization with approximate sensitivities

NASA Technical Reports Server (NTRS)

Patnaik, S. N.; Hopkins, D. A.; Coroneos, R.

1994-01-01

Computational efficiency in structural optimization can be enhanced if the intensive computations associated with the calculation of the sensitivities, that is, gradients of the behavior constraints, are reduced. Approximation to gradients of the behavior constraints that can be generated with small amount of numerical calculations is proposed. Structural optimization with these approximate sensitivities produced correct optimum solution. Approximate gradients performed well for different nonlinear programming methods, such as the sequence of unconstrained minimization technique, method of feasible directions, sequence of quadratic programming, and sequence of linear programming. Structural optimization with approximate gradients can reduce by one third the CPU time that would otherwise be required to solve the problem with explicit closed-form gradients. The proposed gradient approximation shows potential to reduce intensive computation that has been associated with traditional structural optimization.

Simultaneous auto-calibration and gradient delays estimation (SAGE) in non-Cartesian parallel MRI using low-rank constraints.

PubMed

Jiang, Wenwen; Larson, Peder E Z; Lustig, Michael

2018-03-09

To correct gradient timing delays in non-Cartesian MRI while simultaneously recovering corruption-free auto-calibration data for parallel imaging, without additional calibration scans. The calibration matrix constructed from multi-channel k-space data should be inherently low-rank. This property is used to construct reconstruction kernels or sensitivity maps. Delays between the gradient hardware across different axes and RF receive chain, which are relatively benign in Cartesian MRI (excluding EPI), lead to trajectory deviations and hence data inconsistencies for non-Cartesian trajectories. These in turn lead to higher rank and corrupted calibration information which hampers the reconstruction. Here, a method named Simultaneous Auto-calibration and Gradient delays Estimation (SAGE) is proposed that estimates the actual k-space trajectory while simultaneously recovering the uncorrupted auto-calibration data. This is done by estimating the gradient delays that result in the lowest rank of the calibration matrix. The Gauss-Newton method is used to solve the non-linear problem. The method is validated in simulations using center-out radial, projection reconstruction and spiral trajectories. Feasibility is demonstrated on phantom and in vivo scans with center-out radial and projection reconstruction trajectories. SAGE is able to estimate gradient timing delays with high accuracy at a signal to noise ratio level as low as 5. The method is able to effectively remove artifacts resulting from gradient timing delays and restore image quality in center-out radial, projection reconstruction, and spiral trajectories. The low-rank based method introduced simultaneously estimates gradient timing delays and provides accurate auto-calibration data for improved image quality, without any additional calibration scans. © 2018 International Society for Magnetic Resonance in Medicine.

Single fiber lignin distributions based on the density gradient column method

Treesearch

Brian Boyer; Alan W. Rudie

2007-01-01

The density gradient column method was used to determine the effects of uniform and non-uniform pulping processes on variation in individual fiber lignin concentrations of the resulting pulps. A density gradient column uses solvents of different densities and a mixing process to produce a column of liquid with a smooth transition from higher density at the bottom to...

Optimization with artificial neural network systems - A mapping principle and a comparison to gradient based methods

NASA Technical Reports Server (NTRS)

Leong, Harrison Monfook

1988-01-01

General formulae for mapping optimization problems into systems of ordinary differential equations associated with artificial neural networks are presented. A comparison is made to optimization using gradient-search methods. The performance measure is the settling time from an initial state to a target state. A simple analytical example illustrates a situation where dynamical systems representing artificial neural network methods would settle faster than those representing gradient-search. Settling time was investigated for a more complicated optimization problem using computer simulations. The problem was a simplified version of a problem in medical imaging: determining loci of cerebral activity from electromagnetic measurements at the scalp. The simulations showed that gradient based systems typically settled 50 to 100 times faster than systems based on current neural network optimization methods.

Determining the mean hydraulic gradient of ground water affected by tidal fluctuations

USGS Publications Warehouse

Serfes, Michael E.

1991-01-01

Tidal fluctuations in surface-water bodies produce progressive pressure waves in adjacent aquifers. As these pressure waves propagate inland, ground-water levels and hydraulic gradients continuously fluctuate, creating a situation where a single set of water-level measurements cannot be used to accurately characterize ground-water flow. For example, a time series of water levels measured in a confined aquifer in Atlantic City, New Jersey, showed that the hydraulic gradient ranged from .01 to .001 with a 22-degree change in direction during a tidal day of approximately 25 hours. At any point where ground water tidally fluctuates, the magnitude and direction of the hydraulic gradient fluctuates about the mean or regional hydraulic gradient. The net effect of these fluctuations on ground-water flow can be determined using the mean hydraulic gradient, which can be calculated by comparing mean ground- and surface-water elevations. Filtering methods traditionally used to determine daily mean sea level can be similarly applied to ground water to determine mean levels. Method (1) uses 71 consecutive hourly water-level observations to accurately determine the mean level. Method (2) approximates the mean level using only 25 consecutive hourly observations; however, there is a small error associated with this method.

Analysis and calculation by integral methods of laminar compressible boundary-layer with heat transfer and with and without pressure gradient

NASA Technical Reports Server (NTRS)

Morduchow, Morris

1955-01-01

A survey of integral methods in laminar-boundary-layer analysis is first given. A simple and sufficiently accurate method for practical purposes of calculating the properties (including stability) of the laminar compressible boundary layer in an axial pressure gradient with heat transfer at the wall is presented. For flow over a flat plate, the method is applicable for an arbitrarily prescribed distribution of temperature along the surface and for any given constant Prandtl number close to unity. For flow in a pressure gradient, the method is based on a Prandtl number of unity and a uniform wall temperature. A simple and accurate method of determining the separation point in a compressible flow with an adverse pressure gradient over a surface at a given uniform wall temperature is developed. The analysis is based on an extension of the Karman-Pohlhausen method to the momentum and the thermal energy equations in conjunction with fourth- and especially higher degree velocity and stagnation-enthalpy profiles.

The formation of stable pH gradients with weak monovalent buffers for isoelectric focusing in free solution

NASA Technical Reports Server (NTRS)

Mosher, Richard A.; Thormann, Wolfgang; Graham, Aly; Bier, Milan

1985-01-01

Two methods which utilize simple buffers for the generation of stable pH gradients (useful for preparative isoelectric focusing) are compared and contrasted. The first employs preformed gradients comprised of two simple buffers in density-stabilized free solution. The second method utilizes neutral membranes to isolate electrolyte reservoirs of constant composition from the separation column. It is shown by computer simulation that steady-state gradients can be formed at any pH range with any number of components in such a system.

Design and Performance of Property Gradient Ternary Nitride Coating Based on Process Control.

PubMed

Yan, Pei; Chen, Kaijie; Wang, Yubin; Zhou, Han; Peng, Zeyu; Jiao, Li; Wang, Xibin

2018-05-09

Surface coating is an effective approach to improve cutting tool performance, and multiple or gradient coating structures have become a common development strategy. However, composition mutations at the interfaces decrease the performance of multi-layered coatings. The key mitigation technique has been to reduce the interface effect at the boundaries. This study proposes a structure design method for property-component gradient coatings based on process control. The method produces coatings with high internal cohesion and high external hardness, which could reduce the composition and performance mutations at the interface. A ZrTiN property gradient ternary nitride coating was deposited on cemented carbide by multi-arc ion plating with separated Ti and Zr targets. The mechanical properties, friction behaviors, and cutting performances were systematically investigated, compared with a single-layer coating. The results indicated that the gradient coating had better friction and wear performance with lower wear rate and higher resistance to peeling off during sliding friction. The gradient coating had better wear and damage resistance in cutting processes, with lower machined surface roughness Ra. Gradient-structured coatings could effectively inhibit micro crack initiation and growth under alternating force and temperature load. This method could be extended to similar ternary nitride coatings.

Crystal growth and annealing method and apparatus

DOEpatents

Gianoulakis, Steven E.; Sparrow, Robert

2001-01-01

A method and apparatus for producing crystals that minimizes birefringence even at large crystal sizes, and is suitable for production of CaF.sub.2 crystals. The method of the present invention comprises annealing a crystal by maintaining a minimal temperature gradient in the crystal while slowly reducing the bulk temperature of the crystal. An apparatus according to the present invention includes a thermal control system added to a crystal growth and annealing apparatus, wherein the thermal control system allows a temperature gradient during crystal growth but minimizes the temperature gradient during crystal annealing. An embodiment of the present invention comprises a secondary heater incorporated into a conventional crystal growth and annealing apparatus. The secondary heater supplies heat to minimize the temperature gradients in the crystal during the annealing process. The secondary heater can mount near the bottom of the crucible to effectively maintain appropriate temperature gradients.

Computational study of the effect of gradient magnetic field in navigation of spherical particles

NASA Astrophysics Data System (ADS)

Karvelas, E. G.; Lampropoulos, N. K.; Papadimitriou, D. I.; Karakasidis, T. E.; Sarris, I. E.

2017-11-01

The use of spherical magnetic nanoparticles that are coated with drugs and can be navigated in arteries to attack tumors is proposed as an alternative to chemotherapy. Navigation of particles is due to magnetic field gradients that may be produced in an MRI device. In the present work, a computational study for the evaluation of the magnitude of the gradient magnetic field for particles navigation in Y bifurcations is presented. For this purpose, the presented method solves for the fluid flow and includes all the important forces that act on the particles in their discrete motion. The method is based on an iteration algorithm that adjusts the gradient magnetic field to minimize the particles’ deviation from a desired trajectory. Using the above mentioned method, the appropriate range of the gradient magnetic field for optimum navigation of nanoparticles’s aggregation is found.

Canceling the Gravity Gradient Phase Shift in Atom Interferometry.

PubMed

D'Amico, G; Rosi, G; Zhan, S; Cacciapuoti, L; Fattori, M; Tino, G M

2017-12-22

Gravity gradients represent a major obstacle in high-precision measurements by atom interferometry. Controlling their effects to the required stability and accuracy imposes very stringent requirements on the relative positioning of freely falling atomic clouds, as in the case of precise tests of Einstein's equivalence principle. We demonstrate a new method to exactly compensate the effects introduced by gravity gradients in a Raman-pulse atom interferometer. By shifting the frequency of the Raman lasers during the central π pulse, it is possible to cancel the initial position- and velocity-dependent phase shift produced by gravity gradients. We apply this technique to simultaneous interferometers positioned along the vertical direction and demonstrate a new method for measuring local gravity gradients that does not require precise knowledge of the relative position between the atomic clouds. Based on this method, we also propose an improved scheme to determine the Newtonian gravitational constant G towards the 10 ppm relative uncertainty.

Canceling the Gravity Gradient Phase Shift in Atom Interferometry

NASA Astrophysics Data System (ADS)

D'Amico, G.; Rosi, G.; Zhan, S.; Cacciapuoti, L.; Fattori, M.; Tino, G. M.

2017-12-01

Gravity gradients represent a major obstacle in high-precision measurements by atom interferometry. Controlling their effects to the required stability and accuracy imposes very stringent requirements on the relative positioning of freely falling atomic clouds, as in the case of precise tests of Einstein's equivalence principle. We demonstrate a new method to exactly compensate the effects introduced by gravity gradients in a Raman-pulse atom interferometer. By shifting the frequency of the Raman lasers during the central π pulse, it is possible to cancel the initial position- and velocity-dependent phase shift produced by gravity gradients. We apply this technique to simultaneous interferometers positioned along the vertical direction and demonstrate a new method for measuring local gravity gradients that does not require precise knowledge of the relative position between the atomic clouds. Based on this method, we also propose an improved scheme to determine the Newtonian gravitational constant G towards the 10 ppm relative uncertainty.

Building a Global Network of Hydro-climatology Sites in Cloud-affected Tropical Montane Forests

NASA Astrophysics Data System (ADS)

Moore, G. W.; Asbjornsen, H.; Bruijnzeel, S., Sr.; Berry, Z. C.; Giambelluca, T. W.; Martin, P.; Mulligan, M.

2015-12-01

Tropical montane forests are characteristically wet environments with low evapotranspiration and sometimes significant contributions from fog interception. They are often located at headwater catchments critical for water supplies, but ecohydroclimate data in these regions are sparse. Such evidence may be crucial for assessing climate alterations in these sensitive ecosystems. As part of a global effort led by the Tropical Montane Cloud Forest Research Coordination Network (Cloudnet - http://cloudnet.agsci.colostate.edu), we aim to extend the network of tropical montane forest sites and establish robust protocols for measuring key ecohydroclimatic parameters, including fog interception, windblown rain, throughfall, leaf wetness, and micrometeorological conditions. Specific recommendations for standardized protocols include (1) rain and fog collectors uniquely designed to separately quantify fog interception from direct rain inputs, even in windy conditions, (2) trough-style throughfall gages that collect 40 times the area of a typical tipping bucket gage with added features to reduce splash-out, (3) clusters of leaf wetness sensors to differentiate frequency and duration of wetness caused by rain and fog on windward and leeward exposures, and (4) basic micrometeorological sensors for solar radiation, temperature, humidity, and wind. At sites where resources allow for additional measurements, we developed protocols for quantifying soil moisture, soil saturation, and plant water uptake from both roots and leaves (i.e. foliar absorption), since these are also important drivers in these systems. Participating sites will be invited to contribute to a global meta-analysis that will provide new insights into the ecohydrology of cloud-affected tropical montane forests.

Patterns of macromycete community assemblage along an elevation gradient: options for fungal gradient and metacommunity analyse

Treesearch

Marko Gómez-Hernández; Guadalupe Williams-Linera; Roger Guevara; D. Jean Lodge

2012-01-01

Gradient analysis is rarely used in studies of fungal communities. Data on macromycetes from eight sites along an elevation gradient in central Veracruz, Mexico, were used to demonstrate methods for gradient analysis that can be applied to studies of communities of fungi. Selected sites from 100 to 3,500 m altitude represent tropical dry forest, tropical montane cloud...

Mathematical modeling of sample stacking methods in microfluidic systems

NASA Astrophysics Data System (ADS)

Horek, Jon

Gradient focusing methods are a general class of experimental techniques used to simultaneously separate and increase the cross-sectionally averaged concentration of charged particle mixtures. In comparison, Field Amplified Sample Stacking (FASS) techniques first concentrate the collection of molecules before separating them. Together, we denote gradient focusing and FASS methods "sample stacking" and study the dynamics of a specific method, Temperature Gradient Focusing (TGF), in which an axial temperature gradient is applied along a channel filled with weak buffer. Gradients in electroosmotic fluid flow and electrophoretic species velocity create the simultaneous separating and concentrating mechanism mentioned above. In this thesis, we begin with the observation that very little has been done to model the dynamics of gradient focusing, and proceed to solve the fundamental equations of fluid mechanics and scalar transport, assuming the existence of slow axial variations and the Taylor-Aris dispersion coefficient. In doing so, asymptotic methods reduce the equations from 3D to 1D, and we arrive at a simple 1D model which can be used to predict the transient evolution of the cross-sectionally averaged analyte concentration. In the second half of this thesis, we run several numerical focusing experiments with a 3D finite volume code. Comparison of the 1D theory and 3D simulations illustrates not only that the asymptotic theory converges as a certain parameter tends to zero, but also that fairly large axial slip velocity gradients lead to quite small errors in predicted steady variance. Additionally, we observe that the axial asymmetry of the electrophoretic velocity model leads to asymmetric peak shapes, a violation of the symmetric Gaussians predicted by the 1D theory. We conclude with some observations on the effect of Peclet number and gradient strength on the performance of focusing experiments, and describe a method for experimental optimization. Such knowledge is useful for design of lab-on-a-chip devices.

Testing the limits of gradient sensing

PubMed Central

Lakhani, Vinal

2017-01-01

The ability to detect a chemical gradient is fundamental to many cellular processes. In multicellular organisms gradient sensing plays an important role in many physiological processes such as wound healing and development. Unicellular organisms use gradient sensing to move (chemotaxis) or grow (chemotropism) towards a favorable environment. Some cells are capable of detecting extremely shallow gradients, even in the presence of significant molecular-level noise. For example, yeast have been reported to detect pheromone gradients as shallow as 0.1 nM/μm. Noise reduction mechanisms, such as time-averaging and the internalization of pheromone molecules, have been proposed to explain how yeast cells filter fluctuations and detect shallow gradients. Here, we use a Particle-Based Reaction-Diffusion model of ligand-receptor dynamics to test the effectiveness of these mechanisms and to determine the limits of gradient sensing. In particular, we develop novel simulation methods for establishing chemical gradients that not only allow us to study gradient sensing under steady-state conditions, but also take into account transient effects as the gradient forms. Based on reported measurements of reaction rates, our results indicate neither time-averaging nor receptor endocytosis significantly improves the cell’s accuracy in detecting gradients over time scales associated with the initiation of polarized growth. Additionally, our results demonstrate the physical barrier of the cell membrane sharpens chemical gradients across the cell. While our studies are motivated by the mating response of yeast, we believe our results and simulation methods will find applications in many different contexts. PMID:28207738

Efficient method to design RF pulses for parallel excitation MRI using gridding and conjugate gradient

PubMed Central

Feng, Shuo

2014-01-01

Parallel excitation (pTx) techniques with multiple transmit channels have been widely used in high field MRI imaging to shorten the RF pulse duration and/or reduce the specific absorption rate (SAR). However, the efficiency of pulse design still needs substantial improvement for practical real-time applications. In this paper, we present a detailed description of a fast pulse design method with Fourier domain gridding and a conjugate gradient method. Simulation results of the proposed method show that the proposed method can design pTx pulses at an efficiency 10 times higher than that of the conventional conjugate-gradient based method, without reducing the accuracy of the desirable excitation patterns. PMID:24834420

Efficient method to design RF pulses for parallel excitation MRI using gridding and conjugate gradient.

PubMed

Feng, Shuo; Ji, Jim

2014-04-01

Parallel excitation (pTx) techniques with multiple transmit channels have been widely used in high field MRI imaging to shorten the RF pulse duration and/or reduce the specific absorption rate (SAR). However, the efficiency of pulse design still needs substantial improvement for practical real-time applications. In this paper, we present a detailed description of a fast pulse design method with Fourier domain gridding and a conjugate gradient method. Simulation results of the proposed method show that the proposed method can design pTx pulses at an efficiency 10 times higher than that of the conventional conjugate-gradient based method, without reducing the accuracy of the desirable excitation patterns.

Iterative solution of the inverse Cauchy problem for an elliptic equation by the conjugate gradient method

NASA Astrophysics Data System (ADS)

Vasil'ev, V. I.; Kardashevsky, A. M.; Popov, V. V.; Prokopev, G. A.

2017-10-01

This article presents results of computational experiment carried out using a finite-difference method for solving the inverse Cauchy problem for a two-dimensional elliptic equation. The computational algorithm involves an iterative determination of the missing boundary condition from the override condition using the conjugate gradient method. The results of calculations are carried out on the examples with exact solutions as well as at specifying an additional condition with random errors are presented. Results showed a high efficiency of the iterative method of conjugate gradients for numerical solution

In situ synthesis of bilayered gradient poly(vinyl alcohol)/hydroxyapatite composite hydrogel by directional freezing-thawing and electrophoresis method.

PubMed

Su, Cui; Su, Yunlan; Li, Zhiyong; Haq, Muhammad Abdul; Zhou, Yong; Wang, Dujin

2017-08-01

Bilayered poly(vinyl alcohol) (PVA)/hydroxyapatite (HA) composite hydrogels with anisotropic and gradient mechanical properties were prepared by the combination of directional freezing-thawing (DFT) and electrophoresis method. Firstly, PVA hydrogels with aligned channel structure were prepared by the DFT method. Then, HA nanoparticles were in situ synthesized within the PVA hydrogels via electrophoresis. By controlling the time of the electrophoresis process, a bilayered gradient hydrogel containing HA particles in only half of the gel region was obtained. The PVA/HA composite hydrogel exhibited gradient mechanical strength depending on the distance to the cathode. The gradient initial tensile modulus ranging from 0.18MPa to 0.27MPa and the gradient initial compressive modulus from 0.33MPa to 0.51MPa were achieved. The binding strength of the two regions was relatively high and no apparent internal stress or defect was observed at the boundary. The two regions of the bilayered hydrogel also showed different osteoblast cell adhesion properties. Copyright © 2017 Elsevier B.V. All rights reserved.

The molecular gradient using the divide-expand-consolidate resolution of the identity second-order Møller-Plesset perturbation theory: The DEC-RI-MP2 gradient

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bykov, Dmytro; Kristensen, Kasper; Kjærgaard, Thomas

We report an implementation of the molecular gradient using the divide-expand-consolidate resolution of the identity second-order Møller-Plesset perturbation theory (DEC-RI-MP2). The new DEC-RI-MP2 gradient method combines the precision control as well as the linear-scaling and massively parallel features of the DEC scheme with efficient evaluations of the gradient contributions using the RI approximation. We further demonstrate that the DEC-RI-MP2 gradient method is capable of calculating molecular gradients for very large molecular systems. A test set of supramolecular complexes containing up to 158 atoms and 1960 contracted basis functions has been employed to demonstrate the general applicability of the DEC-RI-MP2 methodmore » and to analyze the errors of the DEC approximation. Moreover, the test set contains molecules of complicated electronic structures and is thus deliberately chosen to stress test the DEC-RI-MP2 gradient implementation. Additionally, as a showcase example the full molecular gradient for insulin (787 atoms and 7604 contracted basis functions) has been evaluated.« less

Quantification and Compensation of Eddy-Current-Induced Magnetic Field Gradients

PubMed Central

Spees, William M.; Buhl, Niels; Sun, Peng; Ackerman, Joseph J.H.; Neil, Jeffrey J.; Garbow, Joel R.

2011-01-01

Two robust techniques for quantification and compensation of eddy-current-induced magnetic-field gradients and static magnetic-field shifts (ΔB0) in MRI systems are described. Purpose-built 1-D or 6-point phantoms are employed. Both procedures involve measuring the effects of a prior magnetic-field-gradient test pulse on the phantom’s free induction decay (FID). Phantom-specific analysis of the resulting FID data produces estimates of the time-dependent, eddy-current-induced magnetic field gradient(s) and ΔB0 shift. Using Bayesian methods, the time dependencies of the eddy-current-induced decays are modeled as sums of exponentially decaying components, each defined by an amplitude and time constant. These amplitudes and time constants are employed to adjust the scanner’s gradient pre-emphasis unit and eliminate undesirable eddy-current effects. Measurement with the six-point sample phantom allows for simultaneous, direct estimation of both on-axis and cross-term eddy-current-induced gradients. The two methods are demonstrated and validated on several MRI systems with actively-shielded gradient coil sets. PMID:21764614

Quantification and compensation of eddy-current-induced magnetic-field gradients.

PubMed

Spees, William M; Buhl, Niels; Sun, Peng; Ackerman, Joseph J H; Neil, Jeffrey J; Garbow, Joel R

2011-09-01

Two robust techniques for quantification and compensation of eddy-current-induced magnetic-field gradients and static magnetic-field shifts (ΔB0) in MRI systems are described. Purpose-built 1-D or six-point phantoms are employed. Both procedures involve measuring the effects of a prior magnetic-field-gradient test pulse on the phantom's free induction decay (FID). Phantom-specific analysis of the resulting FID data produces estimates of the time-dependent, eddy-current-induced magnetic field gradient(s) and ΔB0 shift. Using Bayesian methods, the time dependencies of the eddy-current-induced decays are modeled as sums of exponentially decaying components, each defined by an amplitude and time constant. These amplitudes and time constants are employed to adjust the scanner's gradient pre-emphasis unit and eliminate undesirable eddy-current effects. Measurement with the six-point sample phantom allows for simultaneous, direct estimation of both on-axis and cross-term eddy-current-induced gradients. The two methods are demonstrated and validated on several MRI systems with actively-shielded gradient coil sets. Copyright © 2011 Elsevier Inc. All rights reserved.

Improving the accuracy of the gradient method for determining soil carbon dioxide efflux

USDA-ARS?s Scientific Manuscript database

Continuous soil CO2 efflux (Fsoil) estimates can be obtained by the gradient method (GM), but the utility of the method is hindered by uncertainties in the application of published models for the diffusion coefficient (Ds). We compared two in-situ methods for determining Ds, one based calibrating th...

A projection gradient method for computing ground state of spin-2 Bose–Einstein condensates

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Hanquan, E-mail: hanquan.wang@gmail.com; Yunnan Tongchang Scientific Computing and Data Mining Research Center, Kunming, Yunnan Province, 650221

In this paper, a projection gradient method is presented for computing ground state of spin-2 Bose–Einstein condensates (BEC). We first propose the general projection gradient method for solving energy functional minimization problem under multiple constraints, in which the energy functional takes real functions as independent variables. We next extend the method to solve a similar problem, where the energy functional now takes complex functions as independent variables. We finally employ the method into finding the ground state of spin-2 BEC. The key of our method is: by constructing continuous gradient flows (CGFs), the ground state of spin-2 BEC can bemore » computed as the steady state solution of such CGFs. We discretized the CGFs by a conservative finite difference method along with a proper way to deal with the nonlinear terms. We show that the numerical discretization is normalization and magnetization conservative and energy diminishing. Numerical results of the ground state and their energy of spin-2 BEC are reported to demonstrate the effectiveness of the numerical method.« less

Functional linear models to test for differences in prairie wetland hydraulic gradients

USGS Publications Warehouse

Greenwood, Mark C.; Sojda, Richard S.; Preston, Todd M.; Swayne, David A.; Yang, Wanhong; Voinov, A.A.; Rizzoli, A.; Filatova, T.

2010-01-01

Functional data analysis provides a framework for analyzing multiple time series measured frequently in time, treating each series as a continuous function of time. Functional linear models are used to test for effects on hydraulic gradient functional responses collected from three types of land use in Northeastern Montana at fourteen locations. Penalized regression-splines are used to estimate the underlying continuous functions based on the discretely recorded (over time) gradient measurements. Permutation methods are used to assess the statistical significance of effects. A method for accommodating missing observations in each time series is described. Hydraulic gradients may be an initial and fundamental ecosystem process that responds to climate change. We suggest other potential uses of these methods for detecting evidence of climate change.

Phase gradient algorithm based on co-axis two-step phase-shifting interferometry and its application

NASA Astrophysics Data System (ADS)

Wang, Yawei; Zhu, Qiong; Xu, Yuanyuan; Xin, Zhiduo; Liu, Jingye

2017-12-01

A phase gradient method based on co-axis two-step phase-shifting interferometry, is used to reveal the detailed information of a specimen. In this method, the phase gradient distribution can only be obtained by calculating both the first-order derivative and the radial Hilbert transformation of the intensity difference between two phase-shifted interferograms. The feasibility and accuracy of this method were fully verified by the simulation results for a polystyrene sphere and a red blood cell. The empirical results demonstrated that phase gradient is sensitive to changes in the refractive index and morphology. Because phase retrieval and tedious phase unwrapping are not required, the calculation speed is faster. In addition, co-axis interferometry has high spatial resolution.

Study of translational dynamics in molten polymer by variation of gradient pulse-width of PGSE.

PubMed

Stepišnik, Janez; Lahajnar, Gojmir; Zupančič, Ivan; Mohorič, Aleš

2013-11-01

Pulsed gradient spin echo is a method of measuring molecular translation. Changing Δ makes it sensitive to diffusion spectrum. Spin translation effects the buildup of phase structure during the application of gradient pulses as well. The time scale of the self-diffusion measurement shortens if this is taken into account. The method of diffusion spectrometry with variable δ is also less sensitive to artifacts caused by spin relaxation and internal gradient fields. Here the method is demonstrated in the case of diffusion spectrometry of molten polyethylene. The results confirm a model of constraint release in a system of entangled polymer chains as a sort of tube Rouse motion. Copyright © 2013 Elsevier Inc. All rights reserved.

Numerical methods for the design of gradient-index optical coatings.

PubMed

Anzengruber, Stephan W; Klann, Esther; Ramlau, Ronny; Tonova, Diana

2012-12-01

We formulate the problem of designing gradient-index optical coatings as the task of solving a system of operator equations. We use iterative numerical procedures known from the theory of inverse problems to solve it with respect to the coating refractive index profile and thickness. The mathematical derivations necessary for the application of the procedures are presented, and different numerical methods (Landweber, Newton, and Gauss-Newton methods, Tikhonov minimization with surrogate functionals) are implemented. Procedures for the transformation of the gradient coating designs into quasi-gradient ones (i.e., multilayer stacks of homogeneous layers with different refractive indices) are also developed. The design algorithms work with physically available coating materials that could be produced with the modern coating technologies.

Contour Detection and Completion for Inpainting and Segmentation Based on Topological Gradient and Fast Marching Algorithms

PubMed Central

Auroux, Didier; Cohen, Laurent D.; Masmoudi, Mohamed

2011-01-01

We combine in this paper the topological gradient, which is a powerful method for edge detection in image processing, and a variant of the minimal path method in order to find connected contours. The topological gradient provides a more global analysis of the image than the standard gradient and identifies the main edges of an image. Several image processing problems (e.g., inpainting and segmentation) require continuous contours. For this purpose, we consider the fast marching algorithm in order to find minimal paths in the topological gradient image. This coupled algorithm quickly provides accurate and connected contours. We present then two numerical applications, to image inpainting and segmentation, of this hybrid algorithm. PMID:22194734

New head gradient coil design and construction techniques.

PubMed

Handler, William B; Harris, Chad T; Scholl, Timothy J; Parker, Dennis L; Goodrich, K Craig; Dalrymple, Brian; Van Sass, Frank; Chronik, Blaine A

2014-05-01

To design and build a head insert gradient coil to use in conjunction with body gradients for superior imaging. The use of the boundary element method to solve for a gradient coil wire pattern on an arbitrary surface allowed us to incorporate engineering changes into the electromagnetic design of a gradient coil directly. Improved wire pattern design was combined with robust manufacturing techniques and novel cooling methods. The finished coil had an efficiency of 0.15 mT/m/A in all three axes and allowed the imaging region to extend across the entire head and upper part of the neck. The ability to adapt an electromagnetic design to necessary changes from an engineering perspective leads to superior coil performance. Copyright © 2013 Wiley Periodicals, Inc.

Evaluation of multiple tracer methods to estimate low groundwater flow velocities

DOE PAGES

Reimus, Paul W.; Arnold, Bill W.

2017-02-20

Here, four different tracer methods were used to estimate groundwater flow velocity at a multiple-well site in the saturated alluvium south of Yucca Mountain, Nevada: (1) two single-well tracer tests with different rest or “shut-in” periods, (2) a cross-hole tracer test with an extended flow interruption, (3) a comparison of two tracer decay curves in an injection borehole with and without pumping of a downgradient well, and (4) a natural-gradient tracer test. Such tracer methods are potentially very useful for estimating groundwater velocities when hydraulic gradients are flat (and hence uncertain) and also when water level and hydraulic conductivity datamore » are sparse, both of which were the case at this test location. The purpose of the study was to evaluate the first three methods for their ability to provide reasonable estimates of relatively low groundwater flow velocities in such low-hydraulic-gradient environments. The natural-gradient method is generally considered to be the most robust and direct method, so it was used to provide a “ground truth” velocity estimate. However, this method usually requires several wells, so it is often not practical in systems with large depths to groundwater and correspondingly high well installation costs. The fact that a successful natural gradient test was conducted at the test location offered a unique opportunity to compare the flow velocity estimates obtained by the more easily deployed and lower risk methods with the ground-truth natural-gradient method. The groundwater flow velocity estimates from the four methods agreed very well with each other, suggesting that the first three methods all provided reasonably good estimates of groundwater flow velocity at the site. We discuss the advantages and disadvantages of the different methods, as well as some of the uncertainties associated with them.« less

Evaluation of multiple tracer methods to estimate low groundwater flow velocities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reimus, Paul W.; Arnold, Bill W.

Here, four different tracer methods were used to estimate groundwater flow velocity at a multiple-well site in the saturated alluvium south of Yucca Mountain, Nevada: (1) two single-well tracer tests with different rest or “shut-in” periods, (2) a cross-hole tracer test with an extended flow interruption, (3) a comparison of two tracer decay curves in an injection borehole with and without pumping of a downgradient well, and (4) a natural-gradient tracer test. Such tracer methods are potentially very useful for estimating groundwater velocities when hydraulic gradients are flat (and hence uncertain) and also when water level and hydraulic conductivity datamore » are sparse, both of which were the case at this test location. The purpose of the study was to evaluate the first three methods for their ability to provide reasonable estimates of relatively low groundwater flow velocities in such low-hydraulic-gradient environments. The natural-gradient method is generally considered to be the most robust and direct method, so it was used to provide a “ground truth” velocity estimate. However, this method usually requires several wells, so it is often not practical in systems with large depths to groundwater and correspondingly high well installation costs. The fact that a successful natural gradient test was conducted at the test location offered a unique opportunity to compare the flow velocity estimates obtained by the more easily deployed and lower risk methods with the ground-truth natural-gradient method. The groundwater flow velocity estimates from the four methods agreed very well with each other, suggesting that the first three methods all provided reasonably good estimates of groundwater flow velocity at the site. We discuss the advantages and disadvantages of the different methods, as well as some of the uncertainties associated with them.« less

Defect Detection of Steel Surfaces with Global Adaptive Percentile Thresholding of Gradient Image

NASA Astrophysics Data System (ADS)

Neogi, Nirbhar; Mohanta, Dusmanta K.; Dutta, Pranab K.

2017-12-01

Steel strips are used extensively for white goods, auto bodies and other purposes where surface defects are not acceptable. On-line surface inspection systems can effectively detect and classify defects and help in taking corrective actions. For detection of defects use of gradients is very popular in highlighting and subsequently segmenting areas of interest in a surface inspection system. Most of the time, segmentation by a fixed value threshold leads to unsatisfactory results. As defects can be both very small and large in size, segmentation of a gradient image based on percentile thresholding can lead to inadequate or excessive segmentation of defective regions. A global adaptive percentile thresholding of gradient image has been formulated for blister defect and water-deposit (a pseudo defect) in steel strips. The developed method adaptively changes the percentile value used for thresholding depending on the number of pixels above some specific values of gray level of the gradient image. The method is able to segment defective regions selectively preserving the characteristics of defects irrespective of the size of the defects. The developed method performs better than Otsu method of thresholding and an adaptive thresholding method based on local properties.

A fast random walk algorithm for computing the pulsed-gradient spin-echo signal in multiscale porous media.

PubMed

Grebenkov, Denis S

2011-02-01

A new method for computing the signal attenuation due to restricted diffusion in a linear magnetic field gradient is proposed. A fast random walk (FRW) algorithm for simulating random trajectories of diffusing spin-bearing particles is combined with gradient encoding. As random moves of a FRW are continuously adapted to local geometrical length scales, the method is efficient for simulating pulsed-gradient spin-echo experiments in hierarchical or multiscale porous media such as concrete, sandstones, sedimentary rocks and, potentially, brain or lungs. Copyright © 2010 Elsevier Inc. All rights reserved.

Three-dimensional Gravity Inversion with a New Gradient Scheme on Unstructured Grids

NASA Astrophysics Data System (ADS)

Sun, S.; Yin, C.; Gao, X.; Liu, Y.; Zhang, B.

2017-12-01

Stabilized gradient-based methods have been proved to be efficient for inverse problems. Based on these methods, setting gradient close to zero can effectively minimize the objective function. Thus the gradient of objective function determines the inversion results. By analyzing the cause of poor resolution on depth in gradient-based gravity inversion methods, we find that imposing depth weighting functional in conventional gradient can improve the depth resolution to some extent. However, the improvement is affected by the regularization parameter and the effect of the regularization term becomes smaller with increasing depth (shown as Figure 1 (a)). In this paper, we propose a new gradient scheme for gravity inversion by introducing a weighted model vector. The new gradient can improve the depth resolution more efficiently, which is independent of the regularization parameter, and the effect of regularization term will not be weakened when depth increases. Besides, fuzzy c-means clustering method and smooth operator are both used as regularization terms to yield an internal consecutive inverse model with sharp boundaries (Sun and Li, 2015). We have tested our new gradient scheme with unstructured grids on synthetic data to illustrate the effectiveness of the algorithm. Gravity forward modeling with unstructured grids is based on the algorithm proposed by Okbe (1979). We use a linear conjugate gradient inversion scheme to solve the inversion problem. The numerical experiments show a great improvement in depth resolution compared with regular gradient scheme, and the inverse model is compact at all depths (shown as Figure 1 (b)). AcknowledgeThis research is supported by Key Program of National Natural Science Foundation of China (41530320), China Natural Science Foundation for Young Scientists (41404093), and Key National Research Project of China (2016YFC0303100, 2017YFC0601900). ReferencesSun J, Li Y. 2015. Multidomain petrophysically constrained inversion and geology differentiation using guided fuzzy c-means clustering. Geophysics, 80(4): ID1-ID18. Okabe M. 1979. Analytical expressions for gravity anomalies due to homogeneous polyhedral bodies and translations into magnetic anomalies. Geophysics, 44(4), 730-741.

Single image super-resolution using self-optimizing mask via fractional-order gradient interpolation and reconstruction.

PubMed

Yang, Qi; Zhang, Yanzhu; Zhao, Tiebiao; Chen, YangQuan

2017-04-04

Image super-resolution using self-optimizing mask via fractional-order gradient interpolation and reconstruction aims to recover detailed information from low-resolution images and reconstruct them into high-resolution images. Due to the limited amount of data and information retrieved from low-resolution images, it is difficult to restore clear, artifact-free images, while still preserving enough structure of the image such as the texture. This paper presents a new single image super-resolution method which is based on adaptive fractional-order gradient interpolation and reconstruction. The interpolated image gradient via optimal fractional-order gradient is first constructed according to the image similarity and afterwards the minimum energy function is employed to reconstruct the final high-resolution image. Fractional-order gradient based interpolation methods provide an additional degree of freedom which helps optimize the implementation quality due to the fact that an extra free parameter α-order is being used. The proposed method is able to produce a rich texture detail while still being able to maintain structural similarity even under large zoom conditions. Experimental results show that the proposed method performs better than current single image super-resolution techniques. Copyright © 2017 ISA. Published by Elsevier Ltd. All rights reserved.

Uncertainty based pressure reconstruction from velocity measurement with generalized least squares

NASA Astrophysics Data System (ADS)

Zhang, Jiacheng; Scalo, Carlo; Vlachos, Pavlos

2017-11-01

A method using generalized least squares reconstruction of instantaneous pressure field from velocity measurement and velocity uncertainty is introduced and applied to both planar and volumetric flow data. Pressure gradients are computed on a staggered grid from flow acceleration. The variance-covariance matrix of the pressure gradients is evaluated from the velocity uncertainty by approximating the pressure gradient error to a linear combination of velocity errors. An overdetermined system of linear equations which relates the pressure and the computed pressure gradients is formulated and then solved using generalized least squares with the variance-covariance matrix of the pressure gradients. By comparing the reconstructed pressure field against other methods such as solving the pressure Poisson equation, the omni-directional integration, and the ordinary least squares reconstruction, generalized least squares method is found to be more robust to the noise in velocity measurement. The improvement on pressure result becomes more remarkable when the velocity measurement becomes less accurate and more heteroscedastic. The uncertainty of the reconstructed pressure field is also quantified and compared across the different methods.

Nonlinear Analyte Concentration Gradients for One-Step Kinetic Analysis Employing Optical Microring Resonators

PubMed Central

Marty, Michael T.; Kuhnline Sloan, Courtney D.; Bailey, Ryan C.; Sligar, Stephen G.

2012-01-01

Conventional methods to probe the binding kinetics of macromolecules at biosensor surfaces employ a stepwise titration of analyte concentrations and measure the association and dissociation to the immobilized ligand at each concentration level. It has previously been shown that kinetic rates can be measured in a single step by monitoring binding as the analyte concentration increases over time in a linear gradient. We report here the application of nonlinear analyte concentration gradients for determining kinetic rates and equilibrium binding affinities in a single experiment. A versatile nonlinear gradient maker is presented, which is easily applied to microfluidic systems. Simulations validate that accurate kinetic rates can be extracted for a wide range of association and dissociation rates, gradient slopes and curvatures, and with models for mass transport. The nonlinear analyte gradient method is demonstrated with a silicon photonic microring resonator platform to measure prostate specific antigen-antibody binding kinetics. PMID:22686186

Nonlinear analyte concentration gradients for one-step kinetic analysis employing optical microring resonators.

PubMed

Marty, Michael T; Sloan, Courtney D Kuhnline; Bailey, Ryan C; Sligar, Stephen G

2012-07-03

Conventional methods to probe the binding kinetics of macromolecules at biosensor surfaces employ a stepwise titration of analyte concentrations and measure the association and dissociation to the immobilized ligand at each concentration level. It has previously been shown that kinetic rates can be measured in a single step by monitoring binding as the analyte concentration increases over time in a linear gradient. We report here the application of nonlinear analyte concentration gradients for determining kinetic rates and equilibrium binding affinities in a single experiment. A versatile nonlinear gradient maker is presented, which is easily applied to microfluidic systems. Simulations validate that accurate kinetic rates can be extracted for a wide range of association and dissociation rates, gradient slopes, and curvatures, and with models for mass transport. The nonlinear analyte gradient method is demonstrated with a silicon photonic microring resonator platform to measure prostate specific antigen-antibody binding kinetics.

A simple method for MR elastography: a gradient-echo type multi-echo sequence.

PubMed

Numano, Tomokazu; Mizuhara, Kazuyuki; Hata, Junichi; Washio, Toshikatsu; Homma, Kazuhiro

2015-01-01

To demonstrate the feasibility of a novel MR elastography (MRE) technique based on a conventional gradient-echo type multi-echo MR sequence which does not need additional bipolar magnetic field gradients (motion encoding gradient: MEG), yet is sensitive to vibration. In a gradient-echo type multi-echo MR sequence, several images are produced from each echo of the train with different echo times (TEs). If these echoes are synchronized with the vibration, each readout's gradient lobes achieve a MEG-like effect, and the later generated echo causes a greater MEG-like effect. The sequence was tested for the tissue-mimicking agarose gel phantoms and the psoas major muscles of healthy volunteers. It was confirmed that the readout gradient lobes caused an MEG-like effect and the later TE images had higher sensitivity to vibrations. The magnitude image of later generated echo suffered the T2 decay and the susceptibility artifacts, but the wave image and elastogram of later generated echo were unaffected by these effects. In in vivo experiments, this method was able to measure the mean shear modulus of the psoas major muscle. From the results of phantom experiments and volunteer studies, it was shown that this method has clinical application potential. Copyright © 2014 Elsevier Inc. All rights reserved.

A note on the effective evaluation height for flux-gradient relationships and its application to herbicide fluxes

USDA-ARS?s Scientific Manuscript database

Volatilization represents a significant loss pathway for many pesticides, herbicides and other agrochemicals. One common method for measuring the volatilization of agrochemicals is the flux-gradient method. Using this method, the chemical flux is estimated as the product of the vertical concentratio...

Interfacial free energy and stiffness of aluminum during rapid solidification

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brown, Nicholas T.; Martinez, Enrique; Qu, Jianmin

Using molecular dynamics simulations and the capillary fluctuation method, we have calculated the anisotropic crystal-melt interfacial free energy and stiffness of aluminum in a rapid solidification system where a temperature gradient is applied to enforce thermal non-equilibrium. To calculate these material properties, the standard capillary fluctuation method typically used for systems in equilibrium has been modified to incorporate a second-order Taylor expansion of the interfacial free energy term. The result is a robust method for calculating interfacial energy, stiffness and anisotropy as a function of temperature gradient using the fluctuations in the defined interface height. This work includes the calculationmore » of interface characteristics for temperature gradients ranging from 11 to 34 K/nm. The captured results are compared to a thermal equilibrium case using the same model and simulation technique with a zero gradient definition. We define the temperature gradient as the change in temperature over height perpendicular to the crystal-melt interface. The gradients are applied in MD simulations using defined thermostat regions on a stable solid-liquid interface initially in thermal equilibrium. The results of this work show that the interfacial stiffness and free energy for aluminum are dependent on the magnitude of the temperature gradient, however the anisotropic parameters remain independent of the non-equilibrium conditions applied in this analysis. As a result, the relationships of the interfacial free energy/stiffness are determined to be linearly related to the thermal gradient, and can be interpolated to find material characteristics at additional temperature gradients.« less

Interfacial free energy and stiffness of aluminum during rapid solidification

DOE PAGES

Brown, Nicholas T.; Martinez, Enrique; Qu, Jianmin

2017-05-01

Using molecular dynamics simulations and the capillary fluctuation method, we have calculated the anisotropic crystal-melt interfacial free energy and stiffness of aluminum in a rapid solidification system where a temperature gradient is applied to enforce thermal non-equilibrium. To calculate these material properties, the standard capillary fluctuation method typically used for systems in equilibrium has been modified to incorporate a second-order Taylor expansion of the interfacial free energy term. The result is a robust method for calculating interfacial energy, stiffness and anisotropy as a function of temperature gradient using the fluctuations in the defined interface height. This work includes the calculationmore » of interface characteristics for temperature gradients ranging from 11 to 34 K/nm. The captured results are compared to a thermal equilibrium case using the same model and simulation technique with a zero gradient definition. We define the temperature gradient as the change in temperature over height perpendicular to the crystal-melt interface. The gradients are applied in MD simulations using defined thermostat regions on a stable solid-liquid interface initially in thermal equilibrium. The results of this work show that the interfacial stiffness and free energy for aluminum are dependent on the magnitude of the temperature gradient, however the anisotropic parameters remain independent of the non-equilibrium conditions applied in this analysis. As a result, the relationships of the interfacial free energy/stiffness are determined to be linearly related to the thermal gradient, and can be interpolated to find material characteristics at additional temperature gradients.« less

Automated correction of improperly rotated diffusion gradient orientations in diffusion weighted MRI.

PubMed

Jeurissen, Ben; Leemans, Alexander; Sijbers, Jan

2014-10-01

Ensuring one is using the correct gradient orientations in a diffusion MRI study can be a challenging task. As different scanners, file formats and processing tools use different coordinate frame conventions, in practice, users can end up with improperly oriented gradient orientations. Using such wrongly oriented gradient orientations for subsequent diffusion parameter estimation will invalidate all rotationally variant parameters and fiber tractography results. While large misalignments can be detected by visual inspection, small rotations of the gradient table (e.g. due to angulation of the acquisition plane), are much more difficult to detect. In this work, we propose an automated method to align the coordinate frame of the gradient orientations with that of the corresponding diffusion weighted images, using a metric based on whole brain fiber tractography. By transforming the gradient table and measuring the average fiber trajectory length, we search for the transformation that results in the best global 'connectivity'. To ensure a fast calculation of the metric we included a range of algorithmic optimizations in our tractography routine. To make the optimization routine robust to spurious local maxima, we use a stochastic optimization routine that selects a random set of seed points on each evaluation. Using simulations, we show that our method can recover the correct gradient orientations with high accuracy and precision. In addition, we demonstrate that our technique can successfully recover rotated gradient tables on a wide range of clinically realistic data sets. As such, our method provides a practical and robust solution to an often overlooked pitfall in the processing of diffusion MRI. Copyright © 2014 Elsevier B.V. All rights reserved.

Positive Contrast Visualization of Nitinol Devices using Susceptibility Gradient Mapping

PubMed Central

Vonken, Evert-jan P.A.; Schär, Michael; Stuber, Matthias

2008-01-01

MRI visualization of devices is traditionally based on the signal loss due to T2* effects originating from the local susceptibility differences. To visualize nitinol devices with positive contrast a recently introduced post processing method is adapted to map the induced susceptibility gradients. This method operates on regular gradient echo MR images and maps the shift in k-space in a (small) neighborhood of every voxel by Fourier analysis followed by a center of mass calculation. The quantitative map of the local shifts generates the positive contrast image of the devices, while areas without susceptibility gradients render a background with noise only. The positive signal response of this method depends only on the choice of the voxel neighborhood size. The properties of the method are explained and the visualization of a nitinol wire and two stents are shown for illustration. PMID:18727096

Refractive index gradient measurement across the thickness of a dielectric film by the prism coupling method

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sokolov, Viktor I; Panchenko, Vladislav Ya; Seminogov, V N

2012-08-31

A method is proposed for measuring the refractive index gradient n(z) in nonuniformly thick dielectric films. The method is based on the excitation of waveguide modes in a film using the prism coupling technique and on the calculation of n(z) and film thickness H{sub f} with the help of the angular positions of the TE or TM modes. The method can be used for an arbitrary shape of the index modulation over the film thickness in the limit of a small gradient [{Delta} n(z)/n(z) || 1]. (laser applications and other topics in quantum electronics)

Contrast Gradient-Based Blood Velocimetry With Computed Tomography: Theory, Simulations, and Proof of Principle in a Dynamic Flow Phantom.

PubMed

Korporaal, Johannes G; Benz, Matthias R; Schindera, Sebastian T; Flohr, Thomas G; Schmidt, Bernhard

2016-01-01

The aim of this study was to introduce a new theoretical framework describing the relationship between the blood velocity, computed tomography (CT) acquisition velocity, and iodine contrast enhancement in CT images, and give a proof of principle of contrast gradient-based blood velocimetry with CT. The time-averaged blood velocity (v(blood)) inside an artery along the axis of rotation (z axis) is described as the mathematical division of a temporal (Hounsfield unit/second) and spatial (Hounsfield unit/centimeter) iodine contrast gradient. From this new theoretical framework, multiple strategies for calculating the time-averaged blood velocity from existing clinical CT scan protocols are derived, and contrast gradient-based blood velocimetry was introduced as a new method that can calculate v(blood) directly from contrast agent gradients and the changes therein. Exemplarily, the behavior of this new method was simulated for image acquisition with an adaptive 4-dimensional spiral mode consisting of repeated spiral acquisitions with alternating scan direction. In a dynamic flow phantom with flow velocities between 5.1 and 21.2 cm/s, the same acquisition mode was used to validate the simulations and give a proof of principle of contrast gradient-based blood velocimetry in a straight cylinder of 2.5 cm diameter, representing the aorta. In general, scanning with the direction of blood flow results in decreased and scanning against the flow in increased temporal contrast agent gradients. Velocity quantification becomes better for low blood and high acquisition speeds because the deviation of the measured contrast agent gradient from the temporal gradient will increase. In the dynamic flow phantom, a modulation of the enhancement curve, and thus alternation of the contrast agent gradients, can be observed for the adaptive 4-dimensional spiral mode and is in agreement with the simulations. The measured flow velocities in the downslopes of the enhancement curves were in good agreement with the expected values, although the accuracy and precision worsened with increasing flow velocities. The new theoretical framework increases the understanding of the relationship between the blood velocity, CT acquisition velocity, and iodine contrast enhancement in CT images, and it interconnects existing blood velocimetry methods with research on transluminary attenuation gradients. With these new insights, novel strategies for CT blood velocimetry, such as the contrast gradient-based method presented in this article, may be developed.

Growing season boundary layer climate and surface exchanges in a subarctic lichen woodland

NASA Technical Reports Server (NTRS)

Fitzjarrald, David R.; Moore, Kathleen E.

1994-01-01

Between June and August 1990, observations were made at two surface micrometeorological towers near Schefferville Quebec (54 deg 52 min N, 66 deg 40.5 min W), one in a fen and one in the subarctic lichen woodland, and at four surface climatological stations. Data from these surface stations were supplemented by regular radiosonde launches. Supporting measurements of radiative components and soil temperatures allowed heat and moisture balances to be obtained at two sites. The overall surface meteorological experiment design and results of micrometeorological observations made on a 30-m tower in the lichen woodland are presented here. Seasonal variation in the heat and water vapor transport characteristics illustrate the marked effect of the late summer climatological shift in air mass type. During the first half of the summer, average valley sidewalls only 100 m high are sufficient to channel winds along the valley in the entire convective boundary layer. Channeling effects at the surface, known for some time at the long-term climate station in Schefferville, are observed both at ridge top and in the valley, possibly the response of the flow to the NW-SE orientation of valleys in the region. Diurnal surface temperature amplitude at ridge top (approximately equal to 10 C) was found to be half that observed in the valley. Relatively large differences in precipitation among these stations and the climatological station at Schefferville airport were observed and attributed to the local topography. Eddy correlation observations of the heat, moisture and momentum transports were obtained from a 30-m tower above a sparse (approximately equal to 616 stems/ha) black spruce lichen woodland. Properties of the turbulent surface boundary layer agree well with previous wind tunnel studies over idealized rough surfaces. Daytime Bowen ratios of 2.5-3 are larger than those reported in previous studies. Surface layer flux data quality was assessed by looking at the surface layer heat balance. Diurnal and seasonal scale heat budget imbalances were found. We suggest that unmeasured surface heat storage may be responsible for some of the observed imbalance. The presence of the unexplained residual in this and other studies of energy balance over forests casts a note of caution on the interpretation of energy balance components obtained using heat residual methods.

High-Resolution Autoradiography

DTIC Science & Technology

1955-01-01

alloy the tungsten concontrationl of it 1-mnicron culbe is: (8,9 gmI) (8.88 mcg m1-2nl/micron gradient will probably not be so sharp am fit( gradients ...phases of Ilite work: (a) Applicattion and( develop- lie( iiirkeh used. ment (If the( wet-process autorodiographic method will (b)i Trwo methods exist...34 concentration gradients are sufficiently large, the same solution since the range of beta particles in water Wet-process autoradiography as developed for

Analytical energy gradient based on spin-free infinite-order Douglas-Kroll-Hess method with local unitary transformation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nakajima, Yuya; Seino, Junji; Nakai, Hiromi, E-mail: nakai@waseda.jp

In this study, the analytical energy gradient for the spin-free infinite-order Douglas-Kroll-Hess (IODKH) method at the levels of the Hartree-Fock (HF), density functional theory (DFT), and second-order Møller-Plesset perturbation theory (MP2) is developed. Furthermore, adopting the local unitary transformation (LUT) scheme for the IODKH method improves the efficiency in computation of the analytical energy gradient. Numerical assessments of the present gradient method are performed at the HF, DFT, and MP2 levels for the IODKH with and without the LUT scheme. The accuracies are examined for diatomic molecules such as hydrogen halides, halogen dimers, coinage metal (Cu, Ag, and Au) halides,more » and coinage metal dimers, and 20 metal complexes, including the fourth–sixth row transition metals. In addition, the efficiencies are investigated for one-, two-, and three-dimensional silver clusters. The numerical results confirm the accuracy and efficiency of the present method.« less

A general strategy for performing temperature-programming in high performance liquid chromatography--further improvements in the accuracy of retention time predictions of segmented temperature gradients.

PubMed

Wiese, Steffen; Teutenberg, Thorsten; Schmidt, Torsten C

2012-01-27

In the present work it is shown that the linear elution strength (LES) model which was adapted from temperature-programming gas chromatography (GC) can also be employed for systematic method development in high-temperature liquid chromatography (HT-HPLC). The ability to predict isothermal retention times based on temperature-gradient as well as isothermal input data was investigated. For a small temperature interval of ΔT=40°C, both approaches result in very similar predictions. Average relative errors of predicted retention times of 2.7% and 1.9% were observed for simulations based on isothermal and temperature-gradient measurements, respectively. Concurrently, it was investigated whether the accuracy of retention time predictions of segmented temperature gradients can be further improved by temperature dependent calculation of the parameter S(T) of the LES relationship. It was found that the accuracy of retention time predictions of multi-step temperature gradients can be improved to around 1.5%, if S(T) was also calculated temperature dependent. The adjusted experimental design making use of four temperature-gradient measurements was applied for systematic method development of selected food additives by high-temperature liquid chromatography. Method development was performed within a temperature interval from 40°C to 180°C using water as mobile phase. Two separation methods were established where selected food additives were baseline separated. In addition, a good agreement between simulation and experiment was observed, because an average relative error of predicted retention times of complex segmented temperature gradients less than 5% was observed. Finally, a schedule of recommendations to assist the practitioner during systematic method development in high-temperature liquid chromatography was established. Copyright © 2011 Elsevier B.V. All rights reserved.

A gradient system solution to Potts mean field equations and its electronic implementation.

PubMed

Urahama, K; Ueno, S

1993-03-01

A gradient system solution method is presented for solving Potts mean field equations for combinatorial optimization problems subject to winner-take-all constraints. In the proposed solution method the optimum solution is searched by using gradient descent differential equations whose trajectory is confined within the feasible solution space of optimization problems. This gradient system is proven theoretically to always produce a legal local optimum solution of combinatorial optimization problems. An elementary analog electronic circuit implementing the presented method is designed on the basis of current-mode subthreshold MOS technologies. The core constituent of the circuit is the winner-take-all circuit developed by Lazzaro et al. Correct functioning of the presented circuit is exemplified with simulations of the circuits implementing the scheme for solving the shortest path problems.

Local CC2 response method based on the Laplace transform: analytic energy gradients for ground and excited states.

PubMed

Ledermüller, Katrin; Schütz, Martin

2014-04-28

A multistate local CC2 response method for the calculation of analytic energy gradients with respect to nuclear displacements is presented for ground and electronically excited states. The gradient enables the search for equilibrium geometries of extended molecular systems. Laplace transform is used to partition the eigenvalue problem in order to obtain an effective singles eigenvalue problem and adaptive, state-specific local approximations. This leads to an approximation in the energy Lagrangian, which however is shown (by comparison with the corresponding gradient method without Laplace transform) to be of no concern for geometry optimizations. The accuracy of the local approximation is tested and the efficiency of the new code is demonstrated by application calculations devoted to a photocatalytic decarboxylation process of present interest.

On the constrained minimization of smooth Kurdyka—Łojasiewicz functions with the scaled gradient projection method

NASA Astrophysics Data System (ADS)

Prato, Marco; Bonettini, Silvia; Loris, Ignace; Porta, Federica; Rebegoldi, Simone

2016-10-01

The scaled gradient projection (SGP) method is a first-order optimization method applicable to the constrained minimization of smooth functions and exploiting a scaling matrix multiplying the gradient and a variable steplength parameter to improve the convergence of the scheme. For a general nonconvex function, the limit points of the sequence generated by SGP have been proved to be stationary, while in the convex case and with some restrictions on the choice of the scaling matrix the sequence itself converges to a constrained minimum point. In this paper we extend these convergence results by showing that the SGP sequence converges to a limit point provided that the objective function satisfies the Kurdyka-Łojasiewicz property at each point of its domain and its gradient is Lipschitz continuous.

Minimum maximum temperature gradient coil design.

PubMed

While, Peter T; Poole, Michael S; Forbes, Larry K; Crozier, Stuart

2013-08-01

Ohmic heating is a serious problem in gradient coil operation. A method is presented for redesigning cylindrical gradient coils to operate at minimum peak temperature, while maintaining field homogeneity and coil performance. To generate these minimaxT coil windings, an existing analytic method for simulating the spatial temperature distribution of single layer gradient coils is combined with a minimax optimization routine based on sequential quadratic programming. Simulations are provided for symmetric and asymmetric gradient coils that show considerable improvements in reducing maximum temperature over existing methods. The winding patterns of the minimaxT coils were found to be heavily dependent on the assumed thermal material properties and generally display an interesting "fish-eye" spreading of windings in the dense regions of the coil. Small prototype coils were constructed and tested for experimental validation and these demonstrate that with a reasonable estimate of material properties, thermal performance can be improved considerably with negligible change to the field error or standard figures of merit. © 2012 Wiley Periodicals, Inc.

Stochastic Spectral Descent for Discrete Graphical Models

DOE PAGES

Carlson, David; Hsieh, Ya-Ping; Collins, Edo; ...

2015-12-14

Interest in deep probabilistic graphical models has in-creased in recent years, due to their state-of-the-art performance on many machine learning applications. Such models are typically trained with the stochastic gradient method, which can take a significant number of iterations to converge. Since the computational cost of gradient estimation is prohibitive even for modestly sized models, training becomes slow and practically usable models are kept small. In this paper we propose a new, largely tuning-free algorithm to address this problem. Our approach derives novel majorization bounds based on the Schatten- norm. Intriguingly, the minimizers of these bounds can be interpreted asmore » gradient methods in a non-Euclidean space. We thus propose using a stochastic gradient method in non-Euclidean space. We both provide simple conditions under which our algorithm is guaranteed to converge, and demonstrate empirically that our algorithm leads to dramatically faster training and improved predictive ability compared to stochastic gradient descent for both directed and undirected graphical models.« less

Determination of reversed-phase high performance liquid chromatography based octanol-water partition coefficients for neutral and ionizable compounds: Methodology evaluation.

PubMed

Liang, Chao; Qiao, Jun-Qin; Lian, Hong-Zhen

2017-12-15

Reversed-phase liquid chromatography (RPLC) based octanol-water partition coefficient (logP) or distribution coefficient (logD) determination methods were revisited and assessed comprehensively. Classic isocratic and some gradient RPLC methods were conducted and evaluated for neutral, weak acid and basic compounds. Different lipophilicity indexes in logP or logD determination were discussed in detail, including the retention factor logk w corresponding to neat water as mobile phase extrapolated via linear solvent strength (LSS) model from isocratic runs and calculated with software from gradient runs, the chromatographic hydrophobicity index (CHI), apparent gradient capacity factor (k g ') and gradient retention time (t g ). Among the lipophilicity indexes discussed, logk w from whether isocratic or gradient elution methods best correlated with logP or logD. Therefore logk w is recommended as the preferred lipophilicity index for logP or logD determination. logk w easily calculated from methanol gradient runs might be the main candidate to replace logk w calculated from classic isocratic run as the ideal lipophilicity index. These revisited RPLC methods were not applicable for strongly ionized compounds that are hardly ion-suppressed. A previously reported imperfect ion-pair RPLC method was attempted and further explored for studying distribution coefficients (logD) of sulfonic acids that totally ionized in the mobile phase. Notably, experimental logD values of sulfonic acids were given for the first time. The IP-RPLC method provided a distinct way to explore logD values of ionized compounds. Copyright © 2017 Elsevier B.V. All rights reserved.

Spiral Gradient Coil Design for Use in Cylindrical MRI Systems.

PubMed

Wang, Yaohui; Xin, Xuegang; Liu, Feng; Crozier, Stuart

2018-04-01

In magnetic resonance imaging, the stream function based method is commonly used in the design of gradient coils. However, this method can be prone to errors associated with the discretization of continuous current density and wire connections. In this paper, we propose a novel gradient coil design scheme that works directly in the wire space, avoiding the system errors that may appear in the stream function approaches. Specifically, the gradient coil pattern is described with dedicated spiral functions adjusted to allow the coil to produce the required field gradients in the imaging area, minimal stray field, and other engineering terms. The performance of a designed spiral gradient coil was compared with its stream-function counterpart. The numerical evaluation shows that when compared with the conventional solution, the inductance and resistance was reduced by 20.9 and 10.5%, respectively. The overall coil performance (evaluated by the figure of merit (FoM)) was improved up to 26.5% for the x -gradient coil design; for the z-gradient coil design, the inductance and resistance were reduced by 15.1 and 6.7% respectively, and the FoM was increased by 17.7%. In addition, by directly controlling the wire distributions, the spiral gradient coil design was much sparser than conventional coils.

Designing gradient coils with reduced hot spot temperatures.

PubMed

While, Peter T; Forbes, Larry K; Crozier, Stuart

2010-03-01

Gradient coil temperature is an important concern in the design and construction of MRI scanners. Closely spaced gradient coil windings cause temperature hot spots within the system as a result of Ohmic heating associated with large current being driven through resistive material, and can strongly affect the performance of the coils. In this paper, a model is presented for predicting the spatial temperature distribution of a gradient coil, including the location and extent of temperature hot spots. Subsequently, a method is described for designing gradient coils with improved temperature distributions and reduced hot spot temperatures. Maximum temperature represents a non-linear constraint and a relaxed fixed point iteration routine is proposed to adjust coil windings iteratively to minimise this coil feature. Several examples are considered that assume different thermal material properties and cooling mechanisms for the gradient system. Coil winding solutions are obtained for all cases considered that display a considerable drop in hot spot temperature (>20%) when compared to standard minimum power gradient coils with equivalent gradient homogeneity, efficiency and inductance. The method is semi-analytical in nature and can be adapted easily to consider other non-linear constraints in the design of gradient coils or similar systems. Crown Copyright (c) 2009. Published by Elsevier Inc. All rights reserved.

On the electromagnetic scattering from infinite rectangular grids with finite conductivity

NASA Technical Reports Server (NTRS)

Christodoulou, C. G.; Kauffman, J. F.

1986-01-01

A variety of methods can be used in constructing solutions to the problem of mesh scattering. However, each of these methods has certain drawbacks. The present paper is concerned with a new technique which is valid for all spacings. The new method involved, called the fast Fourier transform-conjugate gradient method (FFT-CGM), represents an iterative technique which employs the conjugate gradient method to improve upon each iterate, utilizing the fast Fourier transform. The FFT-CGM method provides a new accurate model which can be extended and applied to the more difficult problems of woven mesh surfaces. The formulation of the FFT-conjugate gradient method for aperture fields and current densities for a planar periodic structure is considered along with singular operators, the formulation of the FFT-CG method for thin wires with finite conductivity, and reflection coefficients.

Controlled droplet transport to target on a high adhesion surface with multi-gradients

PubMed Central

Deng, Siyan; Shang, Weifeng; Feng, Shile; Zhu, Shiping; Xing, Yan; Li, Dan; Hou, Yongping; Zheng, Yongmei

2017-01-01

We introduce multi-gradients including Laplace pressure gradient, wettable gradient and wettable different gradient on a high adhesion surface via special wedge-pattern and improved anodic oxidation method. As a result of the cooperative effect mentioned above, controlled directional motion of a droplet on a high adhesion surface is realized, even when the surface is turned upside down. The droplet motion can be predicted and the movement distances can be controlled by simply adjusting the wedge angle and droplet volume. More interestingly, when Laplace pressure gradient is introduced on a V-shaped wettable gradient surface, two droplets can move toward one another as designed. PMID:28368020

Is forest management a significant source of monoterpenes into the boreal atmosphere?

NASA Astrophysics Data System (ADS)

Haapanala, S.; Hakola, H.; Hellén, H.; Vestenius, M.; Levula, J.; Rinne, J.

2011-08-01

Volatile organic compounds (VOCs) including terpenoids are emitted into the atmosphere from various natural sources. Damaging the plant tissue is known to strongly increase their monoterpene release. We measured the terpenoid emissions caused by timber felling, i.e. those from stumps and logging residue. The emissions from stumps were studied using enclosures and those from the whole felling area using an ecosystem scale micrometeorological method, disjunct eddy accumulation (DEA). The compounds analyzed were isoprene, monoterpenes and sesquiterpenes. Strong emissions of monoterpenes were measured from both the stumps and from the whole felling area. The emission rate fell down rapidly within few months after the logging. In addition to fresh logging residue, the results suggest also other strong monoterpene sources to be present at the felling area. Those could include pre-existing litter, increased microbial activity and remaining undergrowth. To evaluate the possible importance of monoterpenes emitted from cut Scots pine forests in Finland annually, we conducted a rough upscaling. The resulting monoterpene release was about 15 kilotonnes per year which is more than 10 % of the monoterpene release from intact forests in Finland.

[Observation of ozone dry deposition in the field of winter wheat.

PubMed

Li, Shuo; Zheng, You Fei; Wu, Rong Jun; Yin, Ji Fu; Xu, Jing Xin; Zhao, Hui; Sun, Jian

2016-06-01

Ozone is one of the main atmospheric pollutants over surface layer, and its increasing surface ozone concentration and its impact on main crops have become the focus of the public. In order to explore ozone deposition law and environmental factors influencing ozone deposition process, this study used the micrometeorological methods and carried out the experiment under natural conditions. The results showed that during the observational period (the vigorously growing season of wheat), the mean value of ozone flux was -0.35 μg·m -2 ·s -1 (the negative sign indicated that the deposition direction was toward the ground). The mean rate of ozone deposition was 0.55 cm·s -1 . The mean value of aerodynamic resistance was 30 s·m -1 , the mean value of sub-layer resistance was 257 s·m -1 , and that of the canopy layer stomatic resistance was 163 s·m -1 . All the test parameters presented distinct diurnal fluctuation. The ozone deposition resistance was influenced by friction velocity, solar radiation velocity, temperature, relative humidity and other factors.

Waste isolation and contaminant migration - Tools and techniques for monitoring the saturated zone-unsaturated zone-plant-atmosphere continuum

USGS Publications Warehouse

Andraski, Brian J.; Stonestrom, David A.; Nicholson, T.J.; Arlt, H.D.

2011-01-01

In 1976 the U.S. Geological Survey (USGS) began studies of unsaturated zone hydrology next to the Nation’s first commercial disposal facility for low-level radioactive waste (LLRW) near Beatty, NV. Recognizing the need for long-term data collection, the USGS in 1983 established research management areas in the vicinity of the waste-burial facility through agreements with the Bureau of Land Management and the State of Nevada. Within this framework, the Amargosa Desert Research Site (ADRS; http://nevada.usgs.gov/adrs/) is serving as a field laboratory for the sustained study of water-, gas-, and contaminant-transport processes, and the development of models and methods to characterize flow and transport. The research is built on multiple lines of data that include: micrometeorology; evapotranspiration; plant metrics; soil and sediment properties; unsaturated-zone moisture, temperature, and gas composition; geology and geophysics; and groundwater. Contaminant data include tritium, radiocarbon, volatile-organic compounds (VOCs), and elemental mercury. Presented here is a summary of monitoring tools and techniques that are being applied in studies of waste isolation and contaminant migration.

[Transpiration of Choerospondias axillaris in agro-forestrial system and its affecting factors].

PubMed

Zhao, Ying; Zhang, Bin; Zhao, Huachun; Wang, Mingzhu

2005-11-01

Measurement of transpiration is essential to assess plant water use efficiency. Applying Grainer method, this paper measured the sap flow of Choerospondias axillaries in an agro-forestrial system, aimed to evaluate the effects of intercropping and pruning on the diurnal variation of transpiration, and to relate the transpiration rate with climatic factors. The results showed that the diurnal variation of Choerospondias arillaries transpiration rate appeared in parabola, low in the morning and evening, and high at noon. The transpiration rate was closely related to leaf stomatal conductivity and soil water potential, especially the water potential in 100 cm soil depth (R = 0.737). The transpiration rate of Choerospondias axillaries was increased by about 40% approximately 160% in agro-forestrial system through the changes in regional environment and in the deep soil water use by tree. Correlation analysis and multi-factor successive regression analysis indicated that the transpiration was controlled by ray radiation intensity, air temperature and ground temperature, followed by the difference between saturated and actual vapor pressure and the wind speed. A statistical model for calculating the sap flow rate by micrometeorological factors was also provided.

The multigrid preconditioned conjugate gradient method

NASA Technical Reports Server (NTRS)

Tatebe, Osamu

1993-01-01

A multigrid preconditioned conjugate gradient method (MGCG method), which uses the multigrid method as a preconditioner of the PCG method, is proposed. The multigrid method has inherent high parallelism and improves convergence of long wavelength components, which is important in iterative methods. By using this method as a preconditioner of the PCG method, an efficient method with high parallelism and fast convergence is obtained. First, it is considered a necessary condition of the multigrid preconditioner in order to satisfy requirements of a preconditioner of the PCG method. Next numerical experiments show a behavior of the MGCG method and that the MGCG method is superior to both the ICCG method and the multigrid method in point of fast convergence and high parallelism. This fast convergence is understood in terms of the eigenvalue analysis of the preconditioned matrix. From this observation of the multigrid preconditioner, it is realized that the MGCG method converges in very few iterations and the multigrid preconditioner is a desirable preconditioner of the conjugate gradient method.

Fast conjugate phase image reconstruction based on a Chebyshev approximation to correct for B0 field inhomogeneity and concomitant gradients.

PubMed

Chen, Weitian; Sica, Christopher T; Meyer, Craig H

2008-11-01

Off-resonance effects can cause image blurring in spiral scanning and various forms of image degradation in other MRI methods. Off-resonance effects can be caused by both B0 inhomogeneity and concomitant gradient fields. Previously developed off-resonance correction methods focus on the correction of a single source of off-resonance. This work introduces a computationally efficient method of correcting for B0 inhomogeneity and concomitant gradients simultaneously. The method is a fast alternative to conjugate phase reconstruction, with the off-resonance phase term approximated by Chebyshev polynomials. The proposed algorithm is well suited for semiautomatic off-resonance correction, which works well even with an inaccurate or low-resolution field map. The proposed algorithm is demonstrated using phantom and in vivo data sets acquired by spiral scanning. Semiautomatic off-resonance correction alone is shown to provide a moderate amount of correction for concomitant gradient field effects, in addition to B0 imhomogeneity effects. However, better correction is provided by the proposed combined method. The best results were produced using the semiautomatic version of the proposed combined method.

RES: Regularized Stochastic BFGS Algorithm

NASA Astrophysics Data System (ADS)

Mokhtari, Aryan; Ribeiro, Alejandro

2014-12-01

RES, a regularized stochastic version of the Broyden-Fletcher-Goldfarb-Shanno (BFGS) quasi-Newton method is proposed to solve convex optimization problems with stochastic objectives. The use of stochastic gradient descent algorithms is widespread, but the number of iterations required to approximate optimal arguments can be prohibitive in high dimensional problems. Application of second order methods, on the other hand, is impracticable because computation of objective function Hessian inverses incurs excessive computational cost. BFGS modifies gradient descent by introducing a Hessian approximation matrix computed from finite gradient differences. RES utilizes stochastic gradients in lieu of deterministic gradients for both, the determination of descent directions and the approximation of the objective function's curvature. Since stochastic gradients can be computed at manageable computational cost RES is realizable and retains the convergence rate advantages of its deterministic counterparts. Convergence results show that lower and upper bounds on the Hessian egeinvalues of the sample functions are sufficient to guarantee convergence to optimal arguments. Numerical experiments showcase reductions in convergence time relative to stochastic gradient descent algorithms and non-regularized stochastic versions of BFGS. An application of RES to the implementation of support vector machines is developed.

Comparing direct and iterative equation solvers in a large structural analysis software system

NASA Technical Reports Server (NTRS)

Poole, E. L.

1991-01-01

Two direct Choleski equation solvers and two iterative preconditioned conjugate gradient (PCG) equation solvers used in a large structural analysis software system are described. The two direct solvers are implementations of the Choleski method for variable-band matrix storage and sparse matrix storage. The two iterative PCG solvers include the Jacobi conjugate gradient method and an incomplete Choleski conjugate gradient method. The performance of the direct and iterative solvers is compared by solving several representative structural analysis problems. Some key factors affecting the performance of the iterative solvers relative to the direct solvers are identified.

Automatic extraction of planetary image features

NASA Technical Reports Server (NTRS)

LeMoigne-Stewart, Jacqueline J. (Inventor); Troglio, Giulia (Inventor); Benediktsson, Jon A. (Inventor); Serpico, Sebastiano B. (Inventor); Moser, Gabriele (Inventor)

2013-01-01

A method for the extraction of Lunar data and/or planetary features is provided. The feature extraction method can include one or more image processing techniques, including, but not limited to, a watershed segmentation and/or the generalized Hough Transform. According to some embodiments, the feature extraction method can include extracting features, such as, small rocks. According to some embodiments, small rocks can be extracted by applying a watershed segmentation algorithm to the Canny gradient. According to some embodiments, applying a watershed segmentation algorithm to the Canny gradient can allow regions that appear as close contours in the gradient to be segmented.

DISENTANGLING AGN AND STAR FORMATION ACTIVITY AT HIGH REDSHIFT USING HUBBLE SPACE TELESCOPE GRISM SPECTROSCOPY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bridge, Joanna S.; Zeimann, Gregory R.; Trump, Jonathan R.

2016-08-01

Differentiating between active galactic nucleus (AGN) activity and star formation in z ∼ 2 galaxies is difficult because traditional methods, such as line-ratio diagnostics, change with redshift, while multi-wavelength methods (X-ray, radio, IR) are sensitive to only the brightest AGNs. We have developed a new method for spatially resolving emission lines using the Hubble Space Telescope /Wide Field Camera 3 G141 grism spectra and quantifying AGN activity through the spatial gradient of the [O iii]/H β line ratio. Through detailed simulations, we show that our novel line-ratio gradient approach identifies ∼40% more low-mass and obscured AGNs than obtained by classicalmore » methods. Based on our simulations, we developed a relationship that maps the stellar mass, star formation rate, and measured [O iii]/H β gradient to the AGN Eddington ratio. We apply our technique to previously studied stacked samples of galaxies at z ∼ 2 and find that our results are consistent with these studies. This gradient method will also be able to inform other areas of galaxy evolution science, such as inside-out quenching and metallicity gradients, and will be widely applicable to future spatially resolved James Webb Space Telescope data.« less

On the discrepancy between eddy covariance and lysimetry-based surface flux measurements under strongly advective conditions

NASA Astrophysics Data System (ADS)

Alfieri, Joseph G.; Kustas, William P.; Prueger, John H.; Hipps, Lawrence E.; Evett, Steven R.; Basara, Jeffrey B.; Neale, Christopher M. U.; French, Andrew N.; Colaizzi, Paul; Agam, Nurit; Cosh, Michael H.; Chavez, José L.; Howell, Terry A.

2012-12-01

Discrepancies can arise among surface flux measurements collected using disparate techniques due to differences in both the instrumentation and theoretical underpinnings of the different measurement methods. Using data collected primarily within a pair of irrigated cotton fields as a part of the 2008 Bushland Evapotranspiration and Remote Sensing Experiment (BEAREX08), flux measurements collected with two commonly-used methods, eddy covariance (EC) and lysimetry (LY), were compared and substantial differences were found. Daytime mean differences in the flux measurements from the two techniques could be in excess of 200 W m-2 under strongly advective conditions. Three causes for this disparity were found: (i) the failure of the eddy covariance systems to fully balance the surface energy budget, (ii) flux divergence due to the local advection of warm, dry air over the irrigated cotton fields, and (iii) the failure of lysimeters to accurately represent the surface properties of the cotton fields as a whole. Regardless of the underlying cause, the discrepancy among the flux measurements underscores the difficulty in collecting these measurements under strongly advective conditions. It also raises awareness of the uncertainty associated with in situ micrometeorological measurements and the need for caution when using such data for model validation or as observational evidence to definitively support or refute scientific hypotheses.

Retention prediction and separation optimization under multilinear gradient elution in liquid chromatography with Microsoft Excel macros.

PubMed

Fasoula, S; Zisi, Ch; Gika, H; Pappa-Louisi, A; Nikitas, P

2015-05-22

A package of Excel VBA macros have been developed for modeling multilinear gradient retention data obtained in single or double gradient elution mode by changing organic modifier(s) content and/or eluent pH. For this purpose, ten chromatographic models were used and four methods were adopted for their application. The methods were based on (a) the analytical expression of the retention time, provided that this expression is available, (b) the retention times estimated using the Nikitas-Pappa approach, (c) the stepwise approximation, and (d) a simple numerical approximation involving the trapezoid rule for integration of the fundamental equation for gradient elution. For all these methods, Excel VBA macros have been written and implemented using two different platforms; the fitting and the optimization platform. The fitting platform calculates not only the adjustable parameters of the chromatographic models, but also the significance of these parameters and furthermore predicts the analyte elution times. The optimization platform determines the gradient conditions that lead to the optimum separation of a mixture of analytes by using the Solver evolutionary mode, provided that proper constraints are set in order to obtain the optimum gradient profile in the minimum gradient time. The performance of the two platforms was tested using experimental and artificial data. It was found that using the proposed spreadsheets, fitting, prediction, and optimization can be performed easily and effectively under all conditions. Overall, the best performance is exhibited by the analytical and Nikitas-Pappa's methods, although the former cannot be used under all circumstances. Copyright © 2015 Elsevier B.V. All rights reserved.

3D Printed Programmable Release Capsules.

PubMed

Gupta, Maneesh K; Meng, Fanben; Johnson, Blake N; Kong, Yong Lin; Tian, Limei; Yeh, Yao-Wen; Masters, Nina; Singamaneni, Srikanth; McAlpine, Michael C

2015-08-12

The development of methods for achieving precise spatiotemporal control over chemical and biomolecular gradients could enable significant advances in areas such as synthetic tissue engineering, biotic-abiotic interfaces, and bionanotechnology. Living organisms guide tissue development through highly orchestrated gradients of biomolecules that direct cell growth, migration, and differentiation. While numerous methods have been developed to manipulate and implement biomolecular gradients, integrating gradients into multiplexed, three-dimensional (3D) matrices remains a critical challenge. Here we present a method to 3D print stimuli-responsive core/shell capsules for programmable release of multiplexed gradients within hydrogel matrices. These capsules are composed of an aqueous core, which can be formulated to maintain the activity of payload biomolecules, and a poly(lactic-co-glycolic) acid (PLGA, an FDA approved polymer) shell. Importantly, the shell can be loaded with plasmonic gold nanorods (AuNRs), which permits selective rupturing of the capsule when irradiated with a laser wavelength specifically determined by the lengths of the nanorods. This precise control over space, time, and selectivity allows for the ability to pattern 2D and 3D multiplexed arrays of enzyme-loaded capsules along with tunable laser-triggered rupture and release of active enzymes into a hydrogel ambient. The advantages of this 3D printing-based method include (1) highly monodisperse capsules, (2) efficient encapsulation of biomolecular payloads, (3) precise spatial patterning of capsule arrays, (4) "on the fly" programmable reconfiguration of gradients, and (5) versatility for incorporation in hierarchical architectures. Indeed, 3D printing of programmable release capsules may represent a powerful new tool to enable spatiotemporal control over biomolecular gradients.

A hybrid neural learning algorithm using evolutionary learning and derivative free local search method.

PubMed

Ghosh, Ranadhir; Yearwood, John; Ghosh, Moumita; Bagirov, Adil

2006-06-01

In this paper we investigate a hybrid model based on the Discrete Gradient method and an evolutionary strategy for determining the weights in a feed forward artificial neural network. Also we discuss different variants for hybrid models using the Discrete Gradient method and an evolutionary strategy for determining the weights in a feed forward artificial neural network. The Discrete Gradient method has the advantage of being able to jump over many local minima and find very deep local minima. However, earlier research has shown that a good starting point for the discrete gradient method can improve the quality of the solution point. Evolutionary algorithms are best suited for global optimisation problems. Nevertheless they are cursed with longer training times and often unsuitable for real world application. For optimisation problems such as weight optimisation for ANNs in real world applications the dimensions are large and time complexity is critical. Hence the idea of a hybrid model can be a suitable option. In this paper we propose different fusion strategies for hybrid models combining the evolutionary strategy with the discrete gradient method to obtain an optimal solution much quicker. Three different fusion strategies are discussed: a linear hybrid model, an iterative hybrid model and a restricted local search hybrid model. Comparative results on a range of standard datasets are provided for different fusion hybrid models.

A marker-based watershed method for X-ray image segmentation.

PubMed

Zhang, Xiaodong; Jia, Fucang; Luo, Suhuai; Liu, Guiying; Hu, Qingmao

2014-03-01

Digital X-ray images are the most frequent modality for both screening and diagnosis in hospitals. To facilitate subsequent analysis such as quantification and computer aided diagnosis (CAD), it is desirable to exclude image background. A marker-based watershed segmentation method was proposed to segment background of X-ray images. The method consisted of six modules: image preprocessing, gradient computation, marker extraction, watershed segmentation from markers, region merging and background extraction. One hundred clinical direct radiograph X-ray images were used to validate the method. Manual thresholding and multiscale gradient based watershed method were implemented for comparison. The proposed method yielded a dice coefficient of 0.964±0.069, which was better than that of the manual thresholding (0.937±0.119) and that of multiscale gradient based watershed method (0.942±0.098). Special means were adopted to decrease the computational cost, including getting rid of few pixels with highest grayscale via percentile, calculation of gradient magnitude through simple operations, decreasing the number of markers by appropriate thresholding, and merging regions based on simple grayscale statistics. As a result, the processing time was at most 6s even for a 3072×3072 image on a Pentium 4 PC with 2.4GHz CPU (4 cores) and 2G RAM, which was more than one time faster than that of the multiscale gradient based watershed method. The proposed method could be a potential tool for diagnosis and quantification of X-ray images. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

Detection of thermal gradients through fiber-optic Chirped Fiber Bragg Grating (CFBG): Medical thermal ablation scenario

NASA Astrophysics Data System (ADS)

Korganbayev, Sanzhar; Orazayev, Yerzhan; Sovetov, Sultan; Bazyl, Ali; Schena, Emiliano; Massaroni, Carlo; Gassino, Riccardo; Vallan, Alberto; Perrone, Guido; Saccomandi, Paola; Arturo Caponero, Michele; Palumbo, Giovanna; Campopiano, Stefania; Iadicicco, Agostino; Tosi, Daniele

2018-03-01

In this paper, we describe a novel method for spatially distributed temperature measurement with Chirped Fiber Bragg Grating (CFBG) fiber-optic sensors. The proposed method determines the thermal profile in the CFBG region from demodulation of the CFBG optical spectrum. The method is based on an iterative optimization that aims at minimizing the mismatch between the measured CFBG spectrum and a CFBG model based on coupled-mode theory (CMT), perturbed by a temperature gradient. In the demodulation part, we simulate different temperature distribution patterns with Monte-Carlo approach on simulated CFBG spectra. Afterwards, we obtain cost function that minimizes difference between measured and simulated spectra, and results in final temperature profile. Experiments and simulations have been carried out first with a linear gradient, demonstrating a correct operation (error 2.9 °C); then, a setup has been arranged to measure the temperature pattern on a 5-cm long section exposed to medical laser thermal ablation. Overall, the proposed method can operate as a real-time detection technique for thermal gradients over 1.5-5 cm regions, and turns as a key asset for the estimation of thermal gradients at the micro-scale in biomedical applications.

Accuracy of Gradient Reconstruction on Grids with High Aspect Ratio

NASA Technical Reports Server (NTRS)

Thomas, James

2008-01-01

Gradient approximation methods commonly used in unstructured-grid finite-volume schemes intended for solutions of high Reynolds number flow equations are studied comprehensively. The accuracy of gradients within cells and within faces is evaluated systematically for both node-centered and cell-centered formulations. Computational and analytical evaluations are made on a series of high-aspect-ratio grids with different primal elements, including quadrilateral, triangular, and mixed element grids, with and without random perturbations to the mesh. Both rectangular and cylindrical geometries are considered; the latter serves to study the effects of geometric curvature. The study shows that the accuracy of gradient reconstruction on high-aspect-ratio grids is determined by a combination of the grid and the solution. The contributors to the error are identified and approaches to reduce errors are given, including the addition of higher-order terms in the direction of larger mesh spacing. A parameter GAMMA characterizing accuracy on curved high-aspect-ratio grids is discussed and an approximate-mapped-least-square method using a commonly-available distance function is presented; the method provides accurate gradient reconstruction on general grids. The study is intended to be a reference guide accompanying the construction of accurate and efficient methods for high Reynolds number applications

Validation of a Fast-Response Urban Micrometeorological Model to Assess the Performance of Urban Heat Island Mitigation Strategies

NASA Astrophysics Data System (ADS)

Nadeau, D.; Girard, P.; Overby, M.; Pardyjak, E.; Stoll, R., II; Willemsen, P.; Bailey, B.; Parlange, M. B.

2015-12-01

Urban heat islands (UHI) are a real threat in many cities worldwide and mitigation measures have become a central component of urban planning strategies. Even within a city, causes of UHI vary from one neighborhood to another, mostly due the spatial variability in surface thermal properties, building geometry, anthropogenic heat flux releases and vegetation cover. As a result, the performance of UHI mitigation measures also varies in space. Hence, there is a need to develop a tool to quantify the efficiency of UHI mitigation measures at the neighborhood scale. The objective of this ongoing study is to validate the fast-response micrometeorological model QUIC EnvSim (QES). This model can provide all information required for UHI studies with a fine spatial resolution (up to 0.5m) and short computation time. QES combines QUIC, a CFD-based wind solver and dispersion model, and EnvSim, composed of a radiation model, a land-surface model and a turbulent transport model. Here, high-resolution (1 m) simulations are run over a subset of the École Polytechnique Fédérale de Lausanne (EPFL) campus including complex buildings, various surfaces properties and vegetation. For nearly five months in 2006-07, a dense network of meteorological observations (92 weather stations over 0.1 km2) was deployed over the campus and these unique data are used here as a validation dataset. We present validation results for different test cases (e.g., sunny vs cloudy days, different incoming wind speeds and directions) and explore the effect of a few UHI mitigation strategies on the spatial distribution of near-surface air temperatures. Preliminary results suggest that QES may be a valuable tool in decision-making regarding adaptation of urban planning to UHI.

Water Vapor Exchange in a Costa Rican Lower Montane Tropical Forest

NASA Astrophysics Data System (ADS)

Andrews, R.; Miller, G. R.; Cahill, A. T.; Moore, G. W.; Aparecido, L. M. T.

2015-12-01

Because of high canopy interception in tropical forests, evaporation from wet canopy surfaces makes up a sizeable portion of the total water vapor flux. The modeling complexities presented by changing canopy wetness, along with a scarcity of land-atmosphere flux exchange data from tropical forests, means evapotranspiration (ET) processes have been poorly represented in the tropics in land-surface modeling schemes. To better understand tropical forest ET, we will evaluate the influence of canopy wetness and various micrometeorological data on ET partitioning and total ET flux. We have collected flux data from a lower montane forest in Costa Rica at a newly established AmeriFlux site, which notably has the highest mean annual precipitation of any site in the network. The site features a 39-m canopy tower, equipped with two eddy covariance systems (LI-7200, LI-COR), a CO2/H2O atmospheric profile system (AP200, Campbell Scientific), leaf wetness sensors (LWS, Decagon Devices), sap flow sensors, and a soil respiration chamber (LI-8100A, LI-COR) as well as an array of other micrometeorological sensors. At the site, total ET is driven primarily by available energy, and to a lesser extent, by vapor pressure deficit. Average daily latent energy fluxes peak at values of 160, 75, and 35 W m-2 for dry, partially wet, and wet canopy conditions respectively. Correlations between latent energy flux and all other variables are strongest for drier canopy conditions. Complex relationships between canopy wetness and tropical forest ET cause the environmental controls on these fluxes to be significantly different from those in other biomes. As a result, a new modeling paradigm is needed to more accurately model ET differences between tropical forests and other vegetation types.

Biocompatible patterning of proteins on wettability gradient surface by thermo-transfer printing.

PubMed

Kim, Sungho; Ryu, Yong-Sang; Suh, Jeng-Hun; Keum, Chang-Min; Sohn, Youngjoo; Lee, Sin-Doo

2014-08-01

We develop a simple and biocompatible method of patterning proteins on a wettability gradient surface by thermo-transfer printing. The wettability gradient is produced on a poly(dimethylsiloxane) (PDMS)-modified glass substrate through the temperature gradient during thermo-transfer printing. The water contact angle on the PDMS-modified surface is found to gradually increase along the direction of the temperature gradient from a low to a high temperature region. Based on the wettability gradient, the gradual change in the adsorption and immobilization of proteins (cholera toxin B subunit) is achieved in a microfluidic cell with the PDMS-modified surface.

Generalization of the van der Pauw Method: Analyzing Longitudinal Magnetoresistance Asymmetry to Quantify Doping Gradients

NASA Astrophysics Data System (ADS)

Grayson, M.; Zhou, Wang; Yoo, Heun-Mo; Prabhu-Gaunkar, S.; Tiemann, L.; Reichl, C.; Wegscheider, W.

A longitudinal magnetoresistance asymmetry (LMA) between a positive and negative magnetic field is known to occur in both the extreme quantum limit and the classical Drude limit in samples with a nonuniform doping density. By analyzing the current stream function in van der Pauw measurement geometry, it is shown that the electron density gradient can be quantitatively deduced from this LMA in the Drude regime. Results agree with gradients interpolated from local densities calibrated across an entire wafer, establishing a generalization of the van der Pauw method to quantify density gradients. Results will be shown of various semoconductor systems where this method is applied, from bulk doped semiconductors, to exfoliated 2D materials. McCormick Catalyst Award from Northwestern University, EECS Bridge Funding, and AFOSR FA9550-15-1-0247.

Gradient Calculation Methods on Arbitrary Polyhedral Unstructured Meshes for Cell-Centered CFD Solvers

NASA Technical Reports Server (NTRS)

Sozer, Emre; Brehm, Christoph; Kiris, Cetin C.

2014-01-01

A survey of gradient reconstruction methods for cell-centered data on unstructured meshes is conducted within the scope of accuracy assessment. Formal order of accuracy, as well as error magnitudes for each of the studied methods, are evaluated on a complex mesh of various cell types through consecutive local scaling of an analytical test function. The tests highlighted several gradient operator choices that can consistently achieve 1st order accuracy regardless of cell type and shape. The tests further offered error comparisons for given cell types, leading to the observation that the "ideal" gradient operator choice is not universal. Practical implications of the results are explored via CFD solutions of a 2D inviscid standing vortex, portraying the discretization error properties. A relatively naive, yet largely unexplored, approach of local curvilinear stencil transformation exhibited surprisingly favorable properties

On the relation between phase-field crack approximation and gradient damage modelling

NASA Astrophysics Data System (ADS)

Steinke, Christian; Zreid, Imadeddin; Kaliske, Michael

2017-05-01

The finite element implementation of a gradient enhanced microplane damage model is compared to a phase-field model for brittle fracture. Phase-field models and implicit gradient damage models share many similarities despite being conceived from very different standpoints. In both approaches, an additional differential equation and a length scale are introduced. However, while the phase-field method is formulated starting from the description of a crack in fracture mechanics, the gradient method starts from a continuum mechanics point of view. At first, the scope of application for both models is discussed to point out intersections. Then, the analysis of the employed mathematical methods and their rigorous comparison are presented. Finally, numerical examples are introduced to illustrate the findings of the comparison which are summarized in a conclusion at the end of the paper.

Performance analysis of structured gradient algorithm. [for adaptive beamforming linear arrays

NASA Technical Reports Server (NTRS)

Godara, Lal C.

1990-01-01

The structured gradient algorithm uses a structured estimate of the array correlation matrix (ACM) to estimate the gradient required for the constrained least-mean-square (LMS) algorithm. This structure reflects the structure of the exact array correlation matrix for an equispaced linear array and is obtained by spatial averaging of the elements of the noisy correlation matrix. In its standard form the LMS algorithm does not exploit the structure of the array correlation matrix. The gradient is estimated by multiplying the array output with the receiver outputs. An analysis of the two algorithms is presented to show that the covariance of the gradient estimated by the structured method is less sensitive to the look direction signal than that estimated by the standard method. The effect of the number of elements on the signal sensitivity of the two algorithms is studied.

Use of shift gradient in the second dimension to improve the separation space in comprehensive two-dimensional liquid chromatography.

PubMed

Li, Duxin; Schmitz, Oliver J

2013-08-01

Comprehensive two-dimensional liquid chromatography (LC × LC) has received much attention because it offers much higher peak capacities than separation in a single dimension. The advantageous peak capacity makes it attractive for the separation of complex samples. Various gradient methods have been used in LC × LC systems. The use of continuous shift gradient is advantageous because it combines the peak compression effect of full gradient mode and the tailed gradient program in parallel gradient mode. Here, a comparison of LC × LC analysis of Chinese herbal medicine with full gradient mode and shift gradient mode in the second dimension was performed. A correlation between the first and second dimensions was found in full gradient mode, and this was significantly reduced with shift gradient mode. The orthogonality increased by 43.7%. The effective peak distribution area increased significantly, which produced better separation.

Mini-batch optimized full waveform inversion with geological constrained gradient filtering

NASA Astrophysics Data System (ADS)

Yang, Hui; Jia, Junxiong; Wu, Bangyu; Gao, Jinghuai

2018-05-01

High computation cost and generating solutions without geological sense have hindered the wide application of Full Waveform Inversion (FWI). Source encoding technique is a way to dramatically reduce the cost of FWI but subject to fix-spread acquisition setup requirement and slow convergence for the suppression of cross-talk. Traditionally, gradient regularization or preconditioning is applied to mitigate the ill-posedness. An isotropic smoothing filter applied on gradients generally gives non-geological inversion results, and could also introduce artifacts. In this work, we propose to address both the efficiency and ill-posedness of FWI by a geological constrained mini-batch gradient optimization method. The mini-batch gradient descent optimization is adopted to reduce the computation time by choosing a subset of entire shots for each iteration. By jointly applying the structure-oriented smoothing to the mini-batch gradient, the inversion converges faster and gives results with more geological meaning. Stylized Marmousi model is used to show the performance of the proposed method on realistic synthetic model.

Aeromagnetic gradient compensation method for helicopter based on ɛ-support vector regression algorithm

NASA Astrophysics Data System (ADS)

Wu, Peilin; Zhang, Qunying; Fei, Chunjiao; Fang, Guangyou

2017-04-01

Aeromagnetic gradients are typically measured by optically pumped magnetometers mounted on an aircraft. Any aircraft, particularly helicopters, produces significant levels of magnetic interference. Therefore, aeromagnetic compensation is essential, and least square (LS) is the conventional method used for reducing interference levels. However, the LSs approach to solving the aeromagnetic interference model has a few difficulties, one of which is in handling multicollinearity. Therefore, we propose an aeromagnetic gradient compensation method, specifically targeted for helicopter use but applicable on any airborne platform, which is based on the ɛ-support vector regression algorithm. The structural risk minimization criterion intrinsic to the method avoids multicollinearity altogether. Local aeromagnetic anomalies can be retained, and platform-generated fields are suppressed simultaneously by constructing an appropriate loss function and kernel function. The method was tested using an unmanned helicopter and obtained improvement ratios of 12.7 and 3.5 in the vertical and horizontal gradient data, respectively. Both of these values are probably better than those that would have been obtained from the conventional method applied to the same data, had it been possible to do so in a suitable comparative context. The validity of the proposed method is demonstrated by the experimental result.

Application of modified Rosenbrock's method for optimization of nutrient media used in microorganism culturing.

PubMed

Votruba, J; Pilát, P; Prokop, A

1975-12-01

The Rosenbrock's procedure has been modified for optimization of nutrient medium composition and has been found to be less tedious than the Box-Wilson method, especially for larger numbers of optimized parameters. Its merits are particularly obvious with multiparameter optimization where the gradient method, so far the only one employed in microbiology from a variety of optimization methods (e.g., refs, 9 and 10), becomes impractical because of the excessive number of experiments required. The method suggested is also more stable during optimization than the gradient methods which are very sensitive to the selection of steps in the direction of the gradient and may thus easily shoot out of the optimized region. It is also anticipated that other direct search methods, particularly simplex design, may be easily adapted for optimization of medium composition. It is obvious that direct search methods may find an application in process improvement in antibiotic and related industries.

An M-step preconditioned conjugate gradient method for parallel computation

NASA Technical Reports Server (NTRS)

Adams, L.

1983-01-01

This paper describes a preconditioned conjugate gradient method that can be effectively implemented on both vector machines and parallel arrays to solve sparse symmetric and positive definite systems of linear equations. The implementation on the CYBER 203/205 and on the Finite Element Machine is discussed and results obtained using the method on these machines are given.

The effect of density gradients on hydrometers

NASA Astrophysics Data System (ADS)

Heinonen, Martti; Sillanpää, Sampo

2003-05-01

Hydrometers are simple but effective instruments for measuring the density of liquids. In this work, we studied the effect of non-uniform density of liquid on a hydrometer reading. The effect induced by vertical temperature gradients was investigated theoretically and experimentally. A method for compensating for the effect mathematically was developed and tested with experimental data obtained with the MIKES hydrometer calibration system. In the tests, the method was found reliable. However, the reliability depends on the available information on the hydrometer dimensions and density gradients.

Peak-Seeking Control Using Gradient and Hessian Estimates

NASA Technical Reports Server (NTRS)

Ryan, John J.; Speyer, Jason L.

2010-01-01

A peak-seeking control method is presented which utilizes a linear time-varying Kalman filter. Performance function coordinate and magnitude measurements are used by the Kalman filter to estimate the gradient and Hessian of the performance function. The gradient and Hessian are used to command the system toward a local extremum. The method is naturally applied to multiple-input multiple-output systems. Applications of this technique to a single-input single-output example and a two-input one-output example are presented.

Method of Lines Transpose an Implicit Vlasov Maxwell Solver for Plasmas

DTIC Science & Technology

2015-04-17

boundary crossings should be rare. Numerical results for the Bennett pinch are given in Figure 9. In order to resolve large gradients near the center of the...contributing to the large error at the center of the beam due to large gradients there) and with the finite beam cut-off radius and the outflow boundary...usable time step size can be limited by the numerical accuracy of the method when there are large gradients (high-frequency content) in the solution. We

Method and means for a spatial and temporal probe for laser-generated plumes based on density gradients

DOEpatents

Yeung, Edward S.; Chen, Guoying

1990-05-01

A method and means for a spatial and temporal probe for laser generated plumes based on density gradients includes generation of a plume of vaporized material from a surface by an energy source. The probe laser beam is positioned so that the plume passes through the probe laser beam. Movement of the probe laser beam caused by refraction from the density gradient of the plume is monitored. Spatial and temporal information, correlated to one another, is then derived.

Some advance on the comprehension of SR analysis for estimating the flux of a scalar

NASA Astrophysics Data System (ADS)

Castellví, Dr

2009-04-01

In agronomy, the eddy covariance, EC, method likely is the preferred for measuring surface scalar fluxes. For latent heat flux, however, weighing lysimeters maybe preferred in agriculture, but they are rarely affordable and not portable. The dissipation method, DM, is considered the most reliable technique for measuring scalar fluxes over open water because instrument motion contaminates the EC measurements. The main advantage of DM over EC is that it is less sensitive to low frequency instrument platform motions (such as ship and buoys), sensor alignment, precise orientation and stringent steadiness in the mean meteorological conditions (Fairall and Larsen, 1986; Kader, 1992; Edson and Fairall, 1998). Over land, keeping in mind that the EC and DM methods require the same measurements for scalar flux measurement, the DM has several disadvantages versus the EC. Direct measurement of the scalar variance dissipation rate, VDR, requires to capture eddies in the Kolmogorov's microscale (thus scalar time series measured at frequencies in the order of kHz are needed). Therefore, it is not practical. Indirect methods to estimate VDR (such as spectral analysis and second or third order structure functions) requires implementing iterative methods involving similarity relationships that are not well established (Hsieh and Katul, 1997; Castellvi and Snyder, 2008). Currently, there is ample evidence that the DM as explained in traditional micrometeorological books (such as, Panofsky and Dutton, 1984; Brutsaert, 1988; Kaimal and Finnigan; 1994) is, in general, not correct. Accordingly, it likely explains why DM is typically omitted in revisits of micrometeorological methods for estimating scalar fluxes in agronomy. Within the last decade, over some agricultural surfaces, evidence has been shown on the advantages over other micrometeorological methods and the reliability (i.e., close performance to the EC method) of Surface Renewal, SR, theory in conjunction with the Analysis of the scalar time trace to estimate scalar surface fluxes (Paw U et al., 1995). The analysis consists on determination of the mean ramp-pattern dimensions observed in the trace measured at one height. SR analysis is a simple transilient theory that is Lagrangian in nature and based on the scalar conservation equation. Here, it is shown (indirectly) that for a steady, incompressible and horizontally homogeneous flow, the production term in the budget equation of the mean turbulent variance of a scalar can be expressed in terms of the mean ramp dimensions observed in the trace. Therefore, the budget equation provides a link between the contrasting DM and SR analysis methods for estimating scalar surface fluxes. The dissipation method is based on the finest turbulence scales, whereas the SR analysis is based on canopy-scale coherent structures. By normalizing the budget equation, and invoking similarity, it is shown that DM and SR analysis are closely related (details were given in Castellvi and Snyder, 2008). However, SR analysis avoids the disadvantages of DM and it also overcomes potential problems related with the EC method (such as perfect alignment, rotation of the wind field, sensor separation, shadowing, etc.) because the velocity field (i.e., the sonic anemometer) is not required in SR analysis. The relation between SR analysis and DM allows to better interpret a crucial parameter (originally, denoted as ) involved in SR analysis. The parameter  was implemented to account for three assumptions made to solve the scalar flux conservation equation coupled with the Lagrangian scalar mass conservation equation. Considering an air parcel that suddenly moves down to the surface which volume covers all the vertical extend of the surface sources (sinks), the assumptions made are the following; (1) The air parcel remains in contact with the sources (sinks) for a period during which it has been enriched (depleted) of scalar, (2) During the enrichment phase there is not loss of scalar (heat for temperature) through the air parcel top, and (3) Molecular diffusion within the air parcel can be neglected. According to the new  parameter expression derived, it is shown that the half-hourly value is related to the capability of turbulence to mix the scalar within the air parcel during the enrichment (depletion) phase. The expression depends on the variance of the scalar associated to isotropic turbulence over the total (organized and isotropic). The  expression suggests that half-hourly values are in the range, 0 <  ≤ 1, at least when measurements are taken in the inertial sub-layer over vegetated surfaces. Acknowledgments The author gratefully acknowledges K.T. Paw U and R.L Snyder for his encouragement in doing this study. This work was supported by the TRANSCLA project and a fellowship from the Ministerio de Ciencia y Innovación of Spain. References Brutsaert W. 1988. Evaporation into the atmosphere. D. Reidel P.C: Doordrech; 299. Castellvi F, Snyder RL. 2008. Combining the Dissipation method and Surface Renewal analysis to estimate Scalar Fluxes from the time traces over rangeland grass near Ione (California). Hydrol. Proccesses, In Press. Edson JB, Fairall CW. 1998. Similarity Relationships in the Marine Atmospheric Surface Layer for terms on the TKE and Scalar Variance Budgets. Journal of Atmospheric Sciences 55: 2311-2328. Fairall CW, Larsen SE. 1986. Inertial-dissipation methods and turbulent fluxes at the air-ocean interface. Boundary Layer Meteorology 34: 287-301. Hsieh CI, Katul GG. 1997. Dissipation methods, Taylor's hypothesis, and stability correction functions in the atmospheric surface layer. Journal of Geophysical Research 102: (14), 16391-16405. Kader BA. 1992. Determination of turbulent momentum and heat fluxes by spectral methods. Boundary Layer Meteorology 61: 323-347. Kaimal JC, Finnigan JJ. 1994. Atmospheric Boundary Layer Flows. Oxford Univ. Press; 289. Panofsky H, Dutton J. 1984. Atmospheric Turbulence: Models and Methods for Engineering Aplications. John Wiley, NY:397.

A new family of Polak-Ribiere-Polyak conjugate gradient method with the strong-Wolfe line search

NASA Astrophysics Data System (ADS)

Ghani, Nur Hamizah Abdul; Mamat, Mustafa; Rivaie, Mohd

2017-08-01

Conjugate gradient (CG) method is an important technique in unconstrained optimization, due to its effectiveness and low memory requirements. The focus of this paper is to introduce a new CG method for solving large scale unconstrained optimization. Theoretical proofs show that the new method fulfills sufficient descent condition if strong Wolfe-Powell inexact line search is used. Besides, computational results show that our proposed method outperforms to other existing CG methods.

Grass species influence on plant N uptake - Determination of atmospheric N deposition to a semi-natural peat bog site using a 15N labelling approach

NASA Astrophysics Data System (ADS)

Hurkuck, Miriam; Brümmer, Christian; Spott, Oliver; Flessa, Heinz; Kutsch, Werner L.

2014-05-01

Large areas of natural peat bogs in Northwestern Germany have been converted to arable land and were subjected to draining and peat cutting in the past. The few protected peatland areas remaining are affected by high nitrogen (N) deposition. Our study site - a moderately drained raised bog - is surrounded by highly fertilized agricultural land and livestock production. In this study, we used a 15N pool dilution technique called 'Integrated Total Nitrogen Input' (ITNI) to quantify annual deposition of atmospheric N into biomonitoring pots over a two-year period. Since it considers direct N uptake by plants, it was expected to result in higher N input than conventional methods for determination of N deposition (e.g. micrometeorological approaches, bulk N samplers). Using Lolium multiflorum and Eriophorum vaginatum as monitor plants and low, medium and high levels of fertilization, we aimed to simulate increasing N deposition to planted pots and to allocate airborne N after its uptake by the soil-plant system in aboveground biomass, roots and soil. Increasing N fertilization was positively correlated with biomass production of Eriophorum vaginatum, whereas atmospheric plant N uptake decreased and highest airborne N input of 899.8 ± 67.4 µg N d-1 pot-1 was found for low N fertilization. In contrast, Lolium multiflorum showed a clear dependency of N supply on plant N uptake and was highest (688.7 ± 41.4 µg N d-1 pot-1) for highly fertilized vegetation pots. Our results suggest that grass species respond differently to increasing N input. While crop grasses such as Lolium multiflorum take up N according to N availability, species adopted to nutrient-limited conditions like Eriophorum vaginatum show N saturation effects with increasing N supply. Total airborne N input ranged from about 24 to 66 kg N ha-1 yr-1 dependent on the used indicator plant and the amount of added fertilizer. Parallel determination of atmospheric N deposition using a micrometeorological approach complemented with bulk samplers was about 24 kg N ha-1 yr-1 during both years of experiments and was thus at the lower range of results obtained by the ITNI method. The low 15N recovery rate of about 50 % during some experiments indicated an underestimation of the applied ITNI approach, resulting in a maximum possible N uptake of twice as high as the determined N input. Most likely, the intensive agricultural land management of the surrounding areas leads to this high N deposition into the protected peatland area. As a result, increasing sensitivity of ombrotrophic vegetation with a subsequent change in plant species composition and a decline in bog-specific vegetation cannot be excluded.

3D printing for the design and fabrication of polymer-based gradient scaffolds.

PubMed

Bracaglia, Laura G; Smith, Brandon T; Watson, Emma; Arumugasaamy, Navein; Mikos, Antonios G; Fisher, John P

2017-07-01

To accurately mimic the native tissue environment, tissue engineered scaffolds often need to have a highly controlled and varied display of three-dimensional (3D) architecture and geometrical cues. Additive manufacturing in tissue engineering has made possible the development of complex scaffolds that mimic the native tissue architectures. As such, architectural details that were previously unattainable or irreproducible can now be incorporated in an ordered and organized approach, further advancing the structural and chemical cues delivered to cells interacting with the scaffold. This control over the environment has given engineers the ability to unlock cellular machinery that is highly dependent upon the intricate heterogeneous environment of native tissue. Recent research into the incorporation of physical and chemical gradients within scaffolds indicates that integrating these features improves the function of a tissue engineered construct. This review covers recent advances on techniques to incorporate gradients into polymer scaffolds through additive manufacturing and evaluate the success of these techniques. As covered here, to best replicate different tissue types, one must be cognizant of the vastly different types of manufacturing techniques available to create these gradient scaffolds. We review the various types of additive manufacturing techniques that can be leveraged to fabricate scaffolds with heterogeneous properties and discuss methods to successfully characterize them. Additive manufacturing techniques have given tissue engineers the ability to precisely recapitulate the native architecture present within tissue. In addition, these techniques can be leveraged to create scaffolds with both physical and chemical gradients. This work offers insight into several techniques that can be used to generate graded scaffolds, depending on the desired gradient. Furthermore, it outlines methods to determine if the designed gradient was achieved. This review will help to condense the abundance of information that has been published on the creation and characterization of gradient scaffolds and to provide a single review discussing both methods for manufacturing gradient scaffolds and evaluating the establishment of a gradient. Copyright © 2017. Published by Elsevier Ltd.

Development of a Novel, Bicombinatorial Approach to Alloy Development, and Application to Rapid Screening of Creep Resistant Titanium Alloys

NASA Astrophysics Data System (ADS)

Martin, Brian

Combinatorial approaches have proven useful for rapid alloy fabrication and optimization. A new method of producing controlled isothermal gradients using the Gleeble Thermomechanical simulator has been developed, and demonstrated on the metastable beta-Ti alloy beta-21S, achieving a thermal gradient of 525-700 °C. This thermal gradient method has subsequently been coupled with existing combinatorial methods of producing composition gradients using the LENS(TM) additive manufacturing system, through the use of elemental blended powders. This has been demonstrated with a binary Ti-(0-15) wt% Cr build, which has subsequently been characterized with optical and electron microscopy, with special attention to the precipitate of TiCr2 Laves phases. The TiCr2 phase has been explored for its high temperature mechanical properties in a new oxidation resistant beta-Ti alloy, which serves as a demonstration of the new bicombinatorial methods developed as applied to a multicomponent alloy system.

Development, validation, and comparison of ICA-based gradient artifact reduction algorithms for simultaneous EEG-spiral in/out and echo-planar fMRI recordings

PubMed Central

Ryali, S; Glover, GH; Chang, C; Menon, V

2009-01-01

EEG data acquired in an MRI scanner are heavily contaminated by gradient artifacts that can significantly compromise signal quality. We developed two new methods based on Independent Component Analysis (ICA) for reducing gradient artifacts from spiral in-out and echo-planar pulse sequences at 3T, and compared our algorithms with four other commonly used methods: average artifact subtraction (Allen et al. 2000), principal component analysis (Niazy et al. 2005), Taylor series (Wan et al. 2006) and a conventional temporal ICA algorithm. Models of gradient artifacts were derived from simulations as well as a water phantom and performance of each method was evaluated on datasets constructed using visual event-related potentials (ERPs) as well as resting EEG. Our new methods recovered ERPs and resting EEG below the beta band (< 12.5 Hz) with high signal-to-noise ratio (SNR > 4). Our algorithms outperformed all of these methods on resting EEG in the theta- and alpha-bands (SNR > 4); however, for all methods, signal recovery was modest (SNR ~ 1) in the beta-band and poor (SNR < 0.3) in the gamma-band and above. We found that the conventional ICA algorithm performed poorly with uniformly low SNR (< 0.1). Taken together, our new ICA-based methods offer a more robust technique for gradient artifact reduction when scanning at 3T using spiral in-out and echo-planar pulse sequences. We provide new insights into the strengths and weaknesses of each method using a unified subspace framework. PMID:19580873

Hybrid DFP-CG method for solving unconstrained optimization problems

NASA Astrophysics Data System (ADS)

Osman, Wan Farah Hanan Wan; Asrul Hery Ibrahim, Mohd; Mamat, Mustafa

2017-09-01

The conjugate gradient (CG) method and quasi-Newton method are both well known method for solving unconstrained optimization method. In this paper, we proposed a new method by combining the search direction between conjugate gradient method and quasi-Newton method based on BFGS-CG method developed by Ibrahim et al. The Davidon-Fletcher-Powell (DFP) update formula is used as an approximation of Hessian for this new hybrid algorithm. Numerical result showed that the new algorithm perform well than the ordinary DFP method and proven to posses both sufficient descent and global convergence properties.

Shielded resistive electromagnets of arbitrary surface geometry using the boundary element method and a minimum energy constraint.

PubMed

Harris, Chad T; Haw, Dustin W; Handler, William B; Chronik, Blaine A

2013-09-01

Eddy currents are generated in MR by the use of rapidly switched electromagnets, resulting in time varying and spatially varying magnetic fields that must be either minimized or corrected. This problem is further complicated when non-cylindrical insert magnets are used for specialized applications. Interruption of the coupling between an insert coil and the MR system is typically accomplished using active magnetic shielding. A new method of actively shielding insert gradient and shim coils of any surface geometry by use of the boundary element method for coil design with a minimum energy constraint is presented. This method was applied to shield x- and z-gradient coils for two separate cases: a traditional cylindrical primary gradient with cylindrical shield and, to demonstrate its versatility in surface geometry, the same cylindrical primary gradients with a rectangular box-shaped shield. For the cylindrical case this method produced shields that agreed with analytic solutions. For the second case, the rectangular box-shaped shields demonstrated very good shielding characteristics despite having a different geometry than the primary coils. Copyright © 2013 Elsevier Inc. All rights reserved.

Derivation of general analytic gradient expressions for density-fitted post-Hartree-Fock methods: An efficient implementation for the density-fitted second-order Møller–Plesset perturbation theory

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bozkaya, Uğur, E-mail: ugur.bozkaya@atauni.edu.tr

General analytic gradient expressions (with the frozen-core approximation) are presented for density-fitted post-HF methods. An efficient implementation of frozen-core analytic gradients for the second-order Møller–Plesset perturbation theory (MP2) with the density-fitting (DF) approximation (applying to both reference and correlation energies), which is denoted as DF-MP2, is reported. The DF-MP2 method is applied to a set of alkanes, conjugated dienes, and noncovalent interaction complexes to compare the computational cost of single point analytic gradients with MP2 with the resolution of the identity approach (RI-MP2) [F. Weigend and M. Häser, Theor. Chem. Acc. 97, 331 (1997); R. A. Distasio, R. P. Steele,more » Y. M. Rhee, Y. Shao, and M. Head-Gordon, J. Comput. Chem. 28, 839 (2007)]. In the RI-MP2 method, the DF approach is used only for the correlation energy. Our results demonstrate that the DF-MP2 method substantially accelerate the RI-MP2 method for analytic gradient computations due to the reduced input/output (I/O) time. Because in the DF-MP2 method the DF approach is used for both reference and correlation energies, the storage of 4-index electron repulsion integrals (ERIs) are avoided, 3-index ERI tensors are employed instead. Further, as in case of integrals, our gradient equation is completely avoid construction or storage of the 4-index two-particle density matrix (TPDM), instead we use 2- and 3-index TPDMs. Hence, the I/O bottleneck of a gradient computation is significantly overcome. Therefore, the cost of the generalized-Fock matrix (GFM), TPDM, solution of Z-vector equations, the back transformation of TPDM, and integral derivatives are substantially reduced when the DF approach is used for the entire energy expression. Further application results show that the DF approach introduce negligible errors for closed-shell reaction energies and equilibrium bond lengths.« less

Subpixel displacement measurement method based on the combination of particle swarm optimization and gradient algorithm

NASA Astrophysics Data System (ADS)

Guang, Chen; Qibo, Feng; Keqin, Ding; Zhan, Gao

2017-10-01

A subpixel displacement measurement method based on the combination of particle swarm optimization (PSO) and gradient algorithm (GA) was proposed for accuracy and speed optimization in GA, which is a subpixel displacement measurement method better applied in engineering practice. An initial integer-pixel value was obtained according to the global searching ability of PSO, and then gradient operators were adopted for a subpixel displacement search. A comparison was made between this method and GA by simulated speckle images and rigid-body displacement in metal specimens. The results showed that the computational accuracy of the combination of PSO and GA method reached 0.1 pixel in the simulated speckle images, or even 0.01 pixels in the metal specimen. Also, computational efficiency and the antinoise performance of the improved method were markedly enhanced.

A Conjugate Gradient Algorithm with Function Value Information and N-Step Quadratic Convergence for Unconstrained Optimization

PubMed Central

Li, Xiangrong; Zhao, Xupei; Duan, Xiabin; Wang, Xiaoliang

2015-01-01

It is generally acknowledged that the conjugate gradient (CG) method achieves global convergence—with at most a linear convergence rate—because CG formulas are generated by linear approximations of the objective functions. The quadratically convergent results are very limited. We introduce a new PRP method in which the restart strategy is also used. Moreover, the method we developed includes not only n-step quadratic convergence but also both the function value information and gradient value information. In this paper, we will show that the new PRP method (with either the Armijo line search or the Wolfe line search) is both linearly and quadratically convergent. The numerical experiments demonstrate that the new PRP algorithm is competitive with the normal CG method. PMID:26381742

A Conjugate Gradient Algorithm with Function Value Information and N-Step Quadratic Convergence for Unconstrained Optimization.

PubMed

Li, Xiangrong; Zhao, Xupei; Duan, Xiabin; Wang, Xiaoliang

2015-01-01

It is generally acknowledged that the conjugate gradient (CG) method achieves global convergence--with at most a linear convergence rate--because CG formulas are generated by linear approximations of the objective functions. The quadratically convergent results are very limited. We introduce a new PRP method in which the restart strategy is also used. Moreover, the method we developed includes not only n-step quadratic convergence but also both the function value information and gradient value information. In this paper, we will show that the new PRP method (with either the Armijo line search or the Wolfe line search) is both linearly and quadratically convergent. The numerical experiments demonstrate that the new PRP algorithm is competitive with the normal CG method.

A z-gradient array for simultaneous multi-slice excitation with a single-band RF pulse.

PubMed

Ertan, Koray; Taraghinia, Soheil; Sadeghi, Alireza; Atalar, Ergin

2018-07-01

Multi-slice radiofrequency (RF) pulses have higher specific absorption rates, more peak RF power, and longer pulse durations than single-slice RF pulses. Gradient field design techniques using a z-gradient array are investigated for exciting multiple slices with a single-band RF pulse. Two different field design methods are formulated to solve for the required current values of the gradient array elements for the given slice locations. The method requirements are specified, optimization problems are formulated for the minimum current norm and an analytical solution is provided. A 9-channel z-gradient coil array driven by independent, custom-designed gradient amplifiers is used to validate the theory. Performance measures such as normalized slice thickness error, gradient strength per unit norm current, power dissipation, and maximum amplitude of the magnetic field are provided for various slice locations and numbers of slices. Two and 3 slices are excited by a single-band RF pulse in simulations and phantom experiments. The possibility of multi-slice excitation with a single-band RF pulse using a z-gradient array is validated in simulations and phantom experiments. Magn Reson Med 80:400-412, 2018. © 2017 International Society for Magnetic Resonance in Medicine. © 2017 International Society for Magnetic Resonance in Medicine.

Simulated Design Strategies for SPECT Collimators to Reduce the Eddy Currents Induced by MRI Gradient Fields

NASA Astrophysics Data System (ADS)

Samoudi, Amine M.; Van Audenhaege, Karen; Vermeeren, Günter; Verhoyen, Gregory; Martens, Luc; Van Holen, Roel; Joseph, Wout

2015-10-01

Combining single photon emission computed tomography (SPECT) with magnetic resonance imaging (MRI) requires the insertion of highly conductive SPECT collimators inside the MRI scanner, resulting in an induced eddy current disturbing the combined system. We reduced the eddy currents due to the insert of a novel tungsten collimator inside transverse and longitudinal gradient coils. The collimator was produced with metal additive manufacturing, that is part of a microSPECT insert for a preclinical SPECT/MRI scanner. We characterized the induced magnetic field due to the gradient field and adapted the collimators to reduce the induced eddy currents. We modeled the x-, y-, and z-gradient coil and the different collimator designs and simulated them with FEKO, a three-dimensional method of moments / finite element methods (MoM/FEM) full-wave simulation tool. We used a time analysis approach to generate the pulsed magnetic field gradient. Simulation results show that the maximum induced field can be reduced by 50.82% in the final design bringing the maximum induced magnetic field to less than 2% of the applied gradient for all the gradient coils. The numerical model was validated with measurements and was proposed as a tool for studying the effect of a SPECT collimator within the MRI gradient coils.

Lateral Temperature-Gradient Method for High-Throughput Characterization of Material Processing by Millisecond Laser Annealing.

PubMed

Bell, Robert T; Jacobs, Alan G; Sorg, Victoria C; Jung, Byungki; Hill, Megan O; Treml, Benjamin E; Thompson, Michael O

2016-09-12

A high-throughput method for characterizing the temperature dependence of material properties following microsecond to millisecond thermal annealing, exploiting the temperature gradients created by a lateral gradient laser spike anneal (lgLSA), is presented. Laser scans generate spatial thermal gradients of up to 5 °C/μm with peak temperatures ranging from ambient to in excess of 1400 °C, limited only by laser power and materials thermal limits. Discrete spatial property measurements across the temperature gradient are then equivalent to independent measurements after varying temperature anneals. Accurate temperature calibrations, essential to quantitative analysis, are critical and methods for both peak temperature and spatial/temporal temperature profile characterization are presented. These include absolute temperature calibrations based on melting and thermal decomposition, and time-resolved profiles measured using platinum thermistors. A variety of spatially resolved measurement probes, ranging from point-like continuous profiling to large area sampling, are discussed. Examples from annealing of III-V semiconductors, CdSe quantum dots, low-κ dielectrics, and block copolymers are included to demonstrate the flexibility, high throughput, and precision of this technique.

Gradient-based interpolation method for division-of-focal-plane polarimeters.

PubMed

Gao, Shengkui; Gruev, Viktor

2013-01-14

Recent advancements in nanotechnology and nanofabrication have allowed for the emergence of the division-of-focal-plane (DoFP) polarization imaging sensors. These sensors capture polarization properties of the optical field at every imaging frame. However, the DoFP polarization imaging sensors suffer from large registration error as well as reduced spatial-resolution output. These drawbacks can be improved by applying proper image interpolation methods for the reconstruction of the polarization results. In this paper, we present a new gradient-based interpolation method for DoFP polarimeters. The performance of the proposed interpolation method is evaluated against several previously published interpolation methods by using visual examples and root mean square error (RMSE) comparison. We found that the proposed gradient-based interpolation method can achieve better visual results while maintaining a lower RMSE than other interpolation methods under various dynamic ranges of a scene ranging from dim to bright conditions.

Energy minimization in medical image analysis: Methodologies and applications.

PubMed

Zhao, Feng; Xie, Xianghua

2016-02-01

Energy minimization is of particular interest in medical image analysis. In the past two decades, a variety of optimization schemes have been developed. In this paper, we present a comprehensive survey of the state-of-the-art optimization approaches. These algorithms are mainly classified into two categories: continuous method and discrete method. The former includes Newton-Raphson method, gradient descent method, conjugate gradient method, proximal gradient method, coordinate descent method, and genetic algorithm-based method, while the latter covers graph cuts method, belief propagation method, tree-reweighted message passing method, linear programming method, maximum margin learning method, simulated annealing method, and iterated conditional modes method. We also discuss the minimal surface method, primal-dual method, and the multi-objective optimization method. In addition, we review several comparative studies that evaluate the performance of different minimization techniques in terms of accuracy, efficiency, or complexity. These optimization techniques are widely used in many medical applications, for example, image segmentation, registration, reconstruction, motion tracking, and compressed sensing. We thus give an overview on those applications as well. Copyright © 2015 John Wiley & Sons, Ltd.

The Modified HZ Conjugate Gradient Algorithm for Large-Scale Nonsmooth Optimization.

PubMed

Yuan, Gonglin; Sheng, Zhou; Liu, Wenjie

2016-01-01

In this paper, the Hager and Zhang (HZ) conjugate gradient (CG) method and the modified HZ (MHZ) CG method are presented for large-scale nonsmooth convex minimization. Under some mild conditions, convergent results of the proposed methods are established. Numerical results show that the presented methods can be better efficiency for large-scale nonsmooth problems, and several problems are tested (with the maximum dimensions to 100,000 variables).

Magnetic method for stimulating transport in fluids

DOEpatents

Martin, James E.; Solis, Kyle J.

2016-10-18

A method for producing mass and heat transport in fluids, wherein the method does not rely on conventional convection, that is, it does not require gravity, a thermal gradient, or a magnetic field gradient. This method gives rise to a unique class of vigorous, field-controllable flow patterns termed advection lattices. The advection lattices can be used to transport heat and/or mass in any desired direction using only magnetic fields.

Finite difference time domain (FDTD) method for modeling the effect of switched gradients on the human body in MRI.

PubMed

Zhao, Huawei; Crozier, Stuart; Liu, Feng

2002-12-01

Numerical modeling of the eddy currents induced in the human body by the pulsed field gradients in MRI presents a difficult computational problem. It requires an efficient and accurate computational method for high spatial resolution analyses with a relatively low input frequency. In this article, a new technique is described which allows the finite difference time domain (FDTD) method to be efficiently applied over a very large frequency range, including low frequencies. This is not the case in conventional FDTD-based methods. A method of implementing streamline gradients in FDTD is presented, as well as comparative analyses which show that the correct source injection in the FDTD simulation plays a crucial rule in obtaining accurate solutions. In particular, making use of the derivative of the input source waveform is shown to provide distinct benefits in accuracy over direct source injection. In the method, no alterations to the properties of either the source or the transmission media are required. The method is essentially frequency independent and the source injection method has been verified against examples with analytical solutions. Results are presented showing the spatial distribution of gradient-induced electric fields and eddy currents in a complete body model. Copyright 2002 Wiley-Liss, Inc.

A progressive gradient moment nulling design technique.

PubMed

Pipe, J G; Chenevert, T L

1991-05-01

A method is presented for designing motion-compensated gradients in a progressive manner. The method is easily applicable to many types of waveforms, and can compensate for any order of motion. It can be implemented graphically or numerically. Underlying theory and examples of its application are provided.

Bidirectional composition on lie groups for gradient-based image alignment.

PubMed

Mégret, Rémi; Authesserre, Jean-Baptiste; Berthoumieu, Yannick

2010-09-01

In this paper, a new formulation based on bidirectional composition on Lie groups (BCL) for parametric gradient-based image alignment is presented. Contrary to the conventional approaches, the BCL method takes advantage of the gradients of both template and current image without combining them a priori. Based on this bidirectional formulation, two methods are proposed and their relationship with state-of-the-art gradient based approaches is fully discussed. The first one, i.e., the BCL method, relies on the compositional framework to provide the minimization of the compensated error with respect to an augmented parameter vector. The second one, the projected BCL (PBCL), corresponds to a close approximation of the BCL approach. A comparative study is carried out dealing with computational complexity, convergence rate and frequence of convergence. Numerical experiments using a conventional benchmark show the performance improvement especially for asymmetric levels of noise, which is also discussed from a theoretical point of view.

Isolation of purified oocyst walls and sporocysts from Toxoplasma gondii.

PubMed

Everson, William V; Ware, Michael W; Dubey, J P; Lindquist, H D Alan

2002-01-01

Toxoplasma gondii oocysts are environmentally resistant and can infect virtually all warm-blooded hosts, including humans and livestock. Little is known about the biochemical basis for this resistance of oocysts, and mechanism for excystation of T. gondii sporozoites. The objective of the present study was to evaluate different methods (mechanical fragmentation, gradients, flow cytometry) to separate and purify T. gondii oocyst walls and sporocysts. Oocyst walls were successfully separated and purified using iodixanol gradients. Sporocysts were successfully separated and purified using iodixanol and Percoll gradients. Purification was also achieved by flow cytometry. Flow cytometry with fluorescence-activated cell sorting (FACS) yielded analytical quantities of oocyst walls and intact sporocysts. Flow cytometry with FACS also proved useful for quantitation of purity obtained following iodixanol gradient fractionation. Methods reported in this paper will be useful for analytical purposes, such as proteomic analysis of components unique to this life cycle stage, development of detection methods, or excystation studies.

Conjugate gradient type methods for linear systems with complex symmetric coefficient matrices

NASA Technical Reports Server (NTRS)

Freund, Roland

1989-01-01

We consider conjugate gradient type methods for the solution of large sparse linear system Ax equals b with complex symmetric coefficient matrices A equals A(T). Such linear systems arise in important applications, such as the numerical solution of the complex Helmholtz equation. Furthermore, most complex non-Hermitian linear systems which occur in practice are actually complex symmetric. We investigate conjugate gradient type iterations which are based on a variant of the nonsymmetric Lanczos algorithm for complex symmetric matrices. We propose a new approach with iterates defined by a quasi-minimal residual property. The resulting algorithm presents several advantages over the standard biconjugate gradient method. We also include some remarks on the obvious approach to general complex linear systems by solving equivalent real linear systems for the real and imaginary parts of x. Finally, numerical experiments for linear systems arising from the complex Helmholtz equation are reported.

Surface Profile and Stress Field Evaluation using Digital Gradient Sensing Method

DOE PAGES

Miao, C.; Sundaram, B. M.; Huang, L.; ...

2016-08-09

Shape and surface topography evaluation from measured orthogonal slope/gradient data is of considerable engineering significance since many full-field optical sensors and interferometers readily output accurate data of that kind. This has applications ranging from metrology of optical and electronic elements (lenses, silicon wafers, thin film coatings), surface profile estimation, wave front and shape reconstruction, to name a few. In this context, a new methodology for surface profile and stress field determination based on a recently introduced non-contact, full-field optical method called digital gradient sensing (DGS) capable of measuring small angular deflections of light rays coupled with a robust finite-difference-based least-squaresmore » integration (HFLI) scheme in the Southwell configuration is advanced here. The method is demonstrated by evaluating (a) surface profiles of mechanically warped silicon wafers and (b) stress gradients near growing cracks in planar phase objects.« less

Aircraft symmetric flight optimization. [gradient techniques for supersonic aircraft control

NASA Technical Reports Server (NTRS)

Falco, M.; Kelley, H. J.

1973-01-01

Review of the development of gradient techniques and their application to aircraft optimal performance computations in the vertical plane of flight. Results obtained using the method of gradients are presented for attitude- and throttle-control programs which extremize the fuel, range, and time performance indices subject to various trajectory and control constraints, including boundedness of engine throttle control. A penalty function treatment of state inequality constraints which generally appear in aircraft performance problems is outlined. Numerical results for maximum-range, minimum-fuel, and minimum-time climb paths for a hypothetical supersonic turbojet interceptor are presented and discussed. In addition, minimum-fuel climb paths subject to various levels of ground overpressure intensity constraint are indicated for a representative supersonic transport. A variant of the Gel'fand-Tsetlin 'method of ravines' is reviewed, and two possibilities for further development of continuous gradient processes are cited - namely, a projection version of conjugate gradients and a curvilinear search.

Gradient-based Electrical Properties Tomography (gEPT): a Robust Method for Mapping Electrical Properties of Biological Tissues In Vivo Using Magnetic Resonance Imaging

PubMed Central

Liu, Jiaen; Zhang, Xiaotong; Schmitter, Sebastian; Van de Moortele, Pierre-Francois; He, Bin

2014-01-01

Purpose To develop high-resolution electrical properties tomography (EPT) methods and investigate a gradient-based EPT (gEPT) approach which aims to reconstruct the electrical properties (EP), including conductivity and permittivity, of an imaged sample from experimentally measured B1 maps with improved boundary reconstruction and robustness against measurement noise. Theory and Methods Using a multi-channel transmit/receive stripline head coil, with acquired B1 maps for each coil element, by assuming negligible Bz component compared to transverse B1 components, a theory describing the relationship between B1 field, EP value and their spatial gradient has been proposed. The final EP images were obtained through spatial integration over the reconstructed EP gradient. Numerical simulation, physical phantom and in vivo human experiments at 7 T have been conducted to evaluate the performance of the proposed methods. Results Reconstruction results were compared with target EP values in both simulations and phantom experiments. Human experimental results were compared with EP values in literature. Satisfactory agreement was observed with improved boundary reconstruction. Importantly, the proposed gEPT method proved to be more robust against noise when compared to previously described non-gradient-based EPT approaches. Conclusion The proposed gEPT approach holds promises to improve EP mapping quality by recovering the boundary information and enhancing robustness against noise. PMID:25213371

Fast conjugate phase image reconstruction based on a Chebyshev approximation to correct for B0 field inhomogeneity and concomitant gradients

PubMed Central

Chen, Weitian; Sica, Christopher T.; Meyer, Craig H.

2008-01-01

Off-resonance effects can cause image blurring in spiral scanning and various forms of image degradation in other MRI methods. Off-resonance effects can be caused by both B0 inhomogeneity and concomitant gradient fields. Previously developed off-resonance correction methods focus on the correction of a single source of off-resonance. This work introduces a computationally efficient method of correcting for B0 inhomogeneity and concomitant gradients simultaneously. The method is a fast alternative to conjugate phase reconstruction, with the off-resonance phase term approximated by Chebyshev polynomials. The proposed algorithm is well suited for semiautomatic off-resonance correction, which works well even with an inaccurate or low-resolution field map. The proposed algorithm is demonstrated using phantom and in vivo data sets acquired by spiral scanning. Semiautomatic off-resonance correction alone is shown to provide a moderate amount of correction for concomitant gradient field effects, in addition to B0 imhomogeneity effects. However, better correction is provided by the proposed combined method. The best results were produced using the semiautomatic version of the proposed combined method. PMID:18956462

Moving force identification based on modified preconditioned conjugate gradient method

NASA Astrophysics Data System (ADS)

Chen, Zhen; Chan, Tommy H. T.; Nguyen, Andy

2018-06-01

This paper develops a modified preconditioned conjugate gradient (M-PCG) method for moving force identification (MFI) by improving the conjugate gradient (CG) and preconditioned conjugate gradient (PCG) methods with a modified Gram-Schmidt algorithm. The method aims to obtain more accurate and more efficient identification results from the responses of bridge deck caused by vehicles passing by, which are known to be sensitive to ill-posed problems that exist in the inverse problem. A simply supported beam model with biaxial time-varying forces is used to generate numerical simulations with various analysis scenarios to assess the effectiveness of the method. Evaluation results show that regularization matrix L and number of iterations j are very important influence factors to identification accuracy and noise immunity of M-PCG. Compared with the conventional counterpart SVD embedded in the time domain method (TDM) and the standard form of CG, the M-PCG with proper regularization matrix has many advantages such as better adaptability and more robust to ill-posed problems. More importantly, it is shown that the average optimal numbers of iterations of M-PCG can be reduced by more than 70% compared with PCG and this apparently makes M-PCG a preferred choice for field MFI applications.

Efficient spectral computation of the stationary states of rotating Bose-Einstein condensates by preconditioned nonlinear conjugate gradient methods

NASA Astrophysics Data System (ADS)

Antoine, Xavier; Levitt, Antoine; Tang, Qinglin

2017-08-01

We propose a preconditioned nonlinear conjugate gradient method coupled with a spectral spatial discretization scheme for computing the ground states (GS) of rotating Bose-Einstein condensates (BEC), modeled by the Gross-Pitaevskii Equation (GPE). We first start by reviewing the classical gradient flow (also known as imaginary time (IMT)) method which considers the problem from the PDE standpoint, leading to numerically solve a dissipative equation. Based on this IMT equation, we analyze the forward Euler (FE), Crank-Nicolson (CN) and the classical backward Euler (BE) schemes for linear problems and recognize classical power iterations, allowing us to derive convergence rates. By considering the alternative point of view of minimization problems, we propose the preconditioned steepest descent (PSD) and conjugate gradient (PCG) methods for the GS computation of the GPE. We investigate the choice of the preconditioner, which plays a key role in the acceleration of the convergence process. The performance of the new algorithms is tested in 1D, 2D and 3D. We conclude that the PCG method outperforms all the previous methods, most particularly for 2D and 3D fast rotating BECs, while being simple to implement.

Monitoring gradient profile on-line in micro- and nano-high performance liquid chromatography using conductivity detection.

PubMed

Zhang, Min; Chen, Apeng; Lu, Joann J; Cao, Chengxi; Liu, Shaorong

2016-08-19

In micro- or nano-flow high performance liquid chromatography (HPLC), flow-splitters and gradient elutions are commonly used for reverse phase HPLC separations. When a flow splitter was used at a high split-ratio (e.g., 1000:1 or higher), the actual gradient may deviate away from the programmed gradient. Sometimes, mobile phase concentrations can deviate by as much as 5%. In this work, we noticed that the conductivity (σ) of a gradient decreased with the increasing organic-solvent fraction (φ). Based on the relationship between σ and φ, a method was developed for monitoring gradient profile on-line to record any deviations in these HPLC systems. The conductivity could be measured by a traditional conductivity detector or a capacitively coupled contactless conductivity detector (C(4)D). The method was applied for assessing the performance of an electroosmotic pump (EOP) based nano-HPLC. We also observed that σ value of the gradient changed with system pressure; a=0.0175ΔP (R(2)=0.964), where a is the percentage of the conductivity increase and ΔP is the system pressure in bar. This effect was also investigated. Copyright © 2016. Published by Elsevier B.V.

Magnetic Resonance Imaging of Solids Using Oscillating Field Gradients

NASA Astrophysics Data System (ADS)

Daud, Yaacob Mat

1992-01-01

Available from UMI in association with The British Library. A fully automatic solid state NMR imaging spectrometer is described. Use has been made of oscillating field gradients to frequency and phase encode the spatial localisation of the nuclear spins. The RF pulse is applied during the zero crossing of the field gradient, so only low RF power is needed to cover the narrow spectral width of the spins. The oscillating field gradient coils were operated on resonance hence large gradient strength could be applied (up to 200G/cm). Two image reconstruction methods were used, filtered back-projection and two dimensional Fourier transformation. The use of phase encoding, both with oscillating and with pulsed field gradients, enabled us to acquire the data when the gradients were off, and this method proved to be insensitive to eddy currents. It also allowed the use of narrow bandwidth receiver thus improving the signal to noise ratio. The maximum entropy method was used in an effort to remove data truncation effects, although the results were not too convincing. The application of these new imaging schemes, was tested by mapping the T_1 and T_2 of polymers. The calculated relaxation maps produced precise spatial information about T_1 and T_2 which is not possible to achieve by conventional relaxation weight mapping. In a second application, the diffusion of water vapour into dried zeolite powder was studied. We found that the diffusion process is not Fickian.

An SSM/I radiometer simulator for studies of microwave emission from soil. [Special Sensor Microwave/Imager

NASA Technical Reports Server (NTRS)

Galantowicz, J. F.; England, A. W.

1992-01-01

A ground-based simulator of the defense meterological satellite program special sensor microwave/imager (DMSP SSM/I) is described, and its integration with micrometeorological instrumentation for an investigation of microwave emission from moist and frozen soils is discussed. The simulator consists of three single polarization radiometers which are capable of both Dicke radiometer and total power radiometer modes of operation. The radiometers are designed for untended operation through a local computer and a daily telephone link to a laboratory. The functional characteristics of the radiometers are described, together with their field deployment configuration and an example of performance parameters.

Using phylogeny and functional traits for assessing community assembly along environmental gradients: A deterministic process driven by elevation.

PubMed

Xu, Jinshi; Chen, Yu; Zhang, Lixia; Chai, Yongfu; Wang, Mao; Guo, Yaoxin; Li, Ting; Yue, Ming

2017-07-01

Community assembly processes is the primary focus of community ecology. Using phylogenetic-based and functional trait-based methods jointly to explore these processes along environmental gradients are useful ways to explain the change of assembly mechanisms under changing world. Our study combined these methods to test assembly processes in wide range gradients of elevation and other habitat environmental factors. We collected our data at 40 plots in Taibai Mountain, China, with more than 2,300 m altitude difference in study area and then measured traits and environmental factors. Variance partitioning was used to distinguish the main environment factors leading to phylogeny and traits change among 40 plots. Principal component analysis (PCA) was applied to colligate other environment factors. Community assembly patterns along environmental gradients based on phylogenetic and functional methods were studied for exploring assembly mechanisms. Phylogenetic signal was calculated for each community along environmental gradients in order to detect the variation of trait performance on phylogeny. Elevation showed a better explanatory power than other environment factors for phylogenetic and most traits' variance. Phylogenetic and several functional structure clustered at high elevation while some conserved traits overdispersed. Convergent tendency which might be caused by filtering or competition along elevation was detected based on functional traits. Leaf dry matter content (LDMC) and leaf nitrogen content along PCA 1 axis showed conflicting patterns comparing to patterns showed on elevation. LDMC exhibited the strongest phylogenetic signal. Only the phylogenetic signal of maximum plant height showed explicable change along environmental gradients. Synthesis . Elevation is the best environment factors for predicting phylogeny and traits change. Plant's phylogenetic and some functional structures show environmental filtering in alpine region while it shows different assembly processes in middle- and low-altitude region by different trait/phylogeny. The results highlight deterministic processes dominate community assembly in large-scale environmental gradients. Performance of phylogeny and traits along gradients may be independent with each other. The novel method for calculating functional structure which we used in this study and the focus of phylogenetic signal change along gradients may provide more useful ways to detect community assembly mechanisms.

Maximum Power Point Tracking with Dichotomy and Gradient Method for Automobile Exhaust Thermoelectric Generators

NASA Astrophysics Data System (ADS)

Fang, W.; Quan, S. H.; Xie, C. J.; Tang, X. F.; Wang, L. L.; Huang, L.

2016-03-01

In this study, a direct-current/direct-current (DC/DC) converter with maximum power point tracking (MPPT) is developed to down-convert the high voltage DC output from a thermoelectric generator to the lower voltage required to charge batteries. To improve the tracking accuracy and speed of the converter, a novel MPPT control scheme characterized by an aggregated dichotomy and gradient (ADG) method is proposed. In the first stage, the dichotomy algorithm is used as a fast search method to find the approximate region of the maximum power point. The gradient method is then applied for rapid and accurate tracking of the maximum power point. To validate the proposed MPPT method, a test bench composed of an automobile exhaust thermoelectric generator was constructed for harvesting the automotive exhaust heat energy. Steady-state and transient tracking experiments under five different load conditions were carried out using a DC/DC converter with the proposed ADG and with three traditional methods. The experimental results show that the ADG method can track the maximum power within 140 ms with a 1.1% error rate when the engine operates at 3300 rpm@71 NM, which is superior to the performance of the single dichotomy method, the single gradient method and the perturbation and observation method from the viewpoint of improved tracking accuracy and speed.

Nonnegative least-squares image deblurring: improved gradient projection approaches

NASA Astrophysics Data System (ADS)

Benvenuto, F.; Zanella, R.; Zanni, L.; Bertero, M.

2010-02-01

The least-squares approach to image deblurring leads to an ill-posed problem. The addition of the nonnegativity constraint, when appropriate, does not provide regularization, even if, as far as we know, a thorough investigation of the ill-posedness of the resulting constrained least-squares problem has still to be done. Iterative methods, converging to nonnegative least-squares solutions, have been proposed. Some of them have the 'semi-convergence' property, i.e. early stopping of the iteration provides 'regularized' solutions. In this paper we consider two of these methods: the projected Landweber (PL) method and the iterative image space reconstruction algorithm (ISRA). Even if they work well in many instances, they are not frequently used in practice because, in general, they require a large number of iterations before providing a sensible solution. Therefore, the main purpose of this paper is to refresh these methods by increasing their efficiency. Starting from the remark that PL and ISRA require only the computation of the gradient of the functional, we propose the application to these algorithms of special acceleration techniques that have been recently developed in the area of the gradient methods. In particular, we propose the application of efficient step-length selection rules and line-search strategies. Moreover, remarking that ISRA is a scaled gradient algorithm, we evaluate its behaviour in comparison with a recent scaled gradient projection (SGP) method for image deblurring. Numerical experiments demonstrate that the accelerated methods still exhibit the semi-convergence property, with a considerable gain both in the number of iterations and in the computational time; in particular, SGP appears definitely the most efficient one.

Algorithms for accelerated convergence of adaptive PCA.

PubMed

Chatterjee, C; Kang, Z; Roychowdhury, V P

2000-01-01

We derive and discuss new adaptive algorithms for principal component analysis (PCA) that are shown to converge faster than the traditional PCA algorithms due to Oja, Sanger, and Xu. It is well known that traditional PCA algorithms that are derived by using gradient descent on an objective function are slow to converge. Furthermore, the convergence of these algorithms depends on appropriate choices of the gain sequences. Since online applications demand faster convergence and an automatic selection of gains, we present new adaptive algorithms to solve these problems. We first present an unconstrained objective function, which can be minimized to obtain the principal components. We derive adaptive algorithms from this objective function by using: 1) gradient descent; 2) steepest descent; 3) conjugate direction; and 4) Newton-Raphson methods. Although gradient descent produces Xu's LMSER algorithm, the steepest descent, conjugate direction, and Newton-Raphson methods produce new adaptive algorithms for PCA. We also provide a discussion on the landscape of the objective function, and present a global convergence proof of the adaptive gradient descent PCA algorithm using stochastic approximation theory. Extensive experiments with stationary and nonstationary multidimensional Gaussian sequences show faster convergence of the new algorithms over the traditional gradient descent methods.We also compare the steepest descent adaptive algorithm with state-of-the-art methods on stationary and nonstationary sequences.

Edge gradients evaluation for 2D hybrid finite volume method model

USDA-ARS?s Scientific Manuscript database

In this study, a two-dimensional depth-integrated hydrodynamic model was developed using FVM on a hybrid unstructured collocated mesh system. To alleviate the negative effects of mesh irregularity and non-uniformity, a conservative evaluation method for edge gradients based on the second-order Tayl...

Enrichment of Undifferentiated Type A Spermatogonia from Goat Testis Using Discontinuous Percoll Density Gradient and Differential Plating

PubMed Central

Heidari, Banafsheh; Gifani, Minoo; Shirazi, Abolfazl; Zarnani, Amir-Hassan; Baradaran, Behzad; Naderi, Mohammad Mehdi; Behzadi, Bahareh; Borjian-Boroujeni, Sara; Sarvari, Ali; Lakpour, Niknam; Akhondi, Mohammad Mehdi

2014-01-01

Background The well documented source for adult multipotent stem cells is Spermatogonial Stem Cells (SSCs). They are the foundation of spermatogenesis in the testis throughout adult life by balancing self-renewal and differentiation. The aim of this study was to assess the effect of percoll density gradient and differential plating on enrichment of undifferentiated type A spermatogonia in dissociated cellular suspension of goat testes. Additionally, we evaluated the separated fractions of the gradients in percoll and samples in differential plating at different times for cell number, viability and purification rate of goat SSCs in culture. Methods Testicular cells were successfully isolated from one month old goat testis using two-step enzymatic digestion and followed by two purification protocols, differential plating with different times of culture (3, 4, 5, and 6 hr) and discontinuous percoll density with different gradients (20, 28, 30, and 32%). The difference of percentage of undifferentiated SSCs (PGP9.5 positive) in each method was compared using ANOVA and comparison between the highest percentage of corresponding value between two methods was carried out by t-test using Sigma Stat (ver. 3.5). Results The highest PGP9.5 (94.6±0.4) and the lowest c-Kit positive (25.1±0.7) in Percoll method was significantly (p ≤ 0.001) achieved in 32% percoll gradient. While the corresponding rates in differential plating method for the highest PGP9.5 positive cells (81.3±1.1) and lowest c-Kit (17.1±1.4) was achieved after 5 hr culturing (p < 0.001). The enrichment of undifferentiated type A spermatogonia using Percoll was more efficient than differential plating method (p < 0.001). Conclusion Percoll density gradient and differential plating were efficient and fast methods for enrichment of type A spermatogonial stem cells from goat testes. PMID:24834311

Solvent effects in time-dependent self-consistent field methods. II. Variational formulations and analytical gradients

DOE PAGES

Bjorgaard, J. A.; Velizhanin, K. A.; Tretiak, S.

2015-08-06

This study describes variational energy expressions and analytical excited state energy gradients for time-dependent self-consistent field methods with polarizable solvent effects. Linear response, vertical excitation, and state-specific solventmodels are examined. Enforcing a variational ground stateenergy expression in the state-specific model is found to reduce it to the vertical excitation model. Variational excited state energy expressions are then provided for the linear response and vertical excitation models and analytical gradients are formulated. Using semiempiricalmodel chemistry, the variational expressions are verified by numerical and analytical differentiation with respect to a static external electric field. Lastly, analytical gradients are further tested by performingmore » microcanonical excited state molecular dynamics with p-nitroaniline.« less

A family of conjugate gradient methods for large-scale nonlinear equations.

PubMed

Feng, Dexiang; Sun, Min; Wang, Xueyong

2017-01-01

In this paper, we present a family of conjugate gradient projection methods for solving large-scale nonlinear equations. At each iteration, it needs low storage and the subproblem can be easily solved. Compared with the existing solution methods for solving the problem, its global convergence is established without the restriction of the Lipschitz continuity on the underlying mapping. Preliminary numerical results are reported to show the efficiency of the proposed method.

Crystal growth and annealing for minimized residual stress

DOEpatents

Gianoulakis, Steven E.

2002-01-01

A method and apparatus for producing crystals that minimizes birefringence even at large crystal sizes, and is suitable for production of CaF.sub.2 crystals. The method of the present invention comprises annealing a crystal by maintaining a minimal temperature gradient in the crystal while slowly reducing the bulk temperature of the crystal. An apparatus according to the present invention includes a thermal control system added to a crystal growth and annealing apparatus, wherein the thermal control system allows a temperature gradient during crystal growth but minimizes the temperature gradient during crystal annealing.

Method for single crystal growth of photovoltaic perovskite material and devices

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huang, Jinsong; Dong, Qingfeng

Systems and methods for perovskite single crystal growth include using a low temperature solution process that employs a temperature gradient in a perovskite solution in a container, also including at least one small perovskite single crystal, and a substrate in the solution upon which substrate a perovskite crystal nucleates and grows, in part due to the temperature gradient in the solution and in part due to a temperature gradient in the substrate. For example, a top portion of the substrate external to the solution may be cooled.

Method and means for a spatial and temporal probe for laser-generated plumes based on density gradients

DOEpatents

Yeung, E.S.; Chen, G.

1990-05-01

A method and means are disclosed for a spatial and temporal probe for laser generated plumes based on density gradients includes generation of a plume of vaporized material from a surface by an energy source. The probe laser beam is positioned so that the plume passes through the probe laser beam. Movement of the probe laser beam caused by refraction from the density gradient of the plume is monitored. Spatial and temporal information, correlated to one another, is then derived. 15 figs.

Four-body trajectory optimization

NASA Technical Reports Server (NTRS)

Pu, C. L.; Edelbaum, T. N.

1974-01-01

A comprehensive optimization program has been developed for computing fuel-optimal trajectories between the earth and a point in the sun-earth-moon system. It presents methods for generating fuel optimal two-impulse trajectories which may originate at the earth or a point in space and fuel optimal three-impulse trajectories between two points in space. The extrapolation of the state vector and the computation of the state transition matrix are accomplished by the Stumpff-Weiss method. The cost and constraint gradients are computed analytically in terms of the terminal state and the state transition matrix. The 4-body Lambert problem is solved by using the Newton-Raphson method. An accelerated gradient projection method is used to optimize a 2-impulse trajectory with terminal constraint. The Davidon's Variance Method is used both in the accelerated gradient projection method and the outer loop of a 3-impulse trajectory optimization problem.

On the accurate analysis of vibroacoustics in head insert gradient coils.

PubMed

Winkler, Simone A; Alejski, Andrew; Wade, Trevor; McKenzie, Charles A; Rutt, Brian K

2017-10-01

To accurately analyze vibroacoustics in MR head gradient coils. A detailed theoretical model for gradient coil vibroacoustics, including the first description and modeling of Lorentz damping, is introduced and implemented in a multiphysics software package. Numerical finite-element method simulations were used to establish a highly accurate vibroacoustic model in head gradient coils in detail, including the newly introduced Lorentz damping effect. Vibroacoustic coupling was examined through an additional modal analysis. Thorough experimental studies were used to validate simulations. Average experimental sound pressure levels (SPLs) and accelerations over the 0-3000 Hz frequency range were 97.6 dB, 98.7 dB, and 95.4 dB, as well as 20.6 g, 8.7 g, and 15.6 g for the X-, Y-, and Z-gradients, respectively. A reasonable agreement between simulations and measurements was achieved. Vibroacoustic coupling showed a coupled resonance at 2300 Hz for the Z-gradient that is responsible for a sharp peak and the highest SPL value in the acoustic spectrum. We have developed and used more realistic multiphysics simulation methods to gain novel insights into the underlying concepts for vibroacoustics in head gradient coils, which will permit improved analyses of existing gradient coils and novel SPL reduction strategies for future gradient coil designs. Magn Reson Med 78:1635-1645, 2017. © 2016 International Society for Magnetic Resonance in Medicine. © 2016 International Society for Magnetic Resonance in Medicine.

Projection methods for line radiative transfer in spherical media.

NASA Astrophysics Data System (ADS)

Anusha, L. S.; Nagendra, K. N.

An efficient numerical method called the Preconditioned Bi-Conjugate Gradient (Pre-BiCG) method is presented for the solution of radiative transfer equation in spherical geometry. A variant of this method called Stabilized Preconditioned Bi-Conjugate Gradient (Pre-BiCG-STAB) is also presented. These methods are based on projections on the subspaces of the n dimensional Euclidean space mathbb {R}n called Krylov subspaces. The methods are shown to be faster in terms of convergence rate compared to the contemporary iterative methods such as Jacobi, Gauss-Seidel and Successive Over Relaxation (SOR).

SAGRAD: A Program for Neural Network Training with Simulated Annealing and the Conjugate Gradient Method.

PubMed

Bernal, Javier; Torres-Jimenez, Jose

2015-01-01

SAGRAD (Simulated Annealing GRADient), a Fortran 77 program for computing neural networks for classification using batch learning, is discussed. Neural network training in SAGRAD is based on a combination of simulated annealing and Møller's scaled conjugate gradient algorithm, the latter a variation of the traditional conjugate gradient method, better suited for the nonquadratic nature of neural networks. Different aspects of the implementation of the training process in SAGRAD are discussed, such as the efficient computation of gradients and multiplication of vectors by Hessian matrices that are required by Møller's algorithm; the (re)initialization of weights with simulated annealing required to (re)start Møller's algorithm the first time and each time thereafter that it shows insufficient progress in reaching a possibly local minimum; and the use of simulated annealing when Møller's algorithm, after possibly making considerable progress, becomes stuck at a local minimum or flat area of weight space. Outlines of the scaled conjugate gradient algorithm, the simulated annealing procedure and the training process used in SAGRAD are presented together with results from running SAGRAD on two examples of training data.

Stem cell migration and mechanotransduction on linear stiffness gradient hydrogels

PubMed Central

Hadden, William J.; Young, Jennifer L.; Holle, Andrew W.; McFetridge, Meg L.; Kim, Du Yong; Wijesinghe, Philip; Taylor-Weiner, Hermes; Wen, Jessica H.; Lee, Andrew R.; Bieback, Karen; Vo, Ba-Ngu; Sampson, David D.; Kennedy, Brendan F.; Spatz, Joachim P.; Choi, Yu Suk

2017-01-01

The spatial presentation of mechanical information is a key parameter for cell behavior. We have developed a method of polymerization control in which the differential diffusion distance of unreacted cross-linker and monomer into a prepolymerized hydrogel sink results in a tunable stiffness gradient at the cell–matrix interface. This simple, low-cost, robust method was used to produce polyacrylamide hydrogels with stiffness gradients of 0.5, 1.7, 2.9, 4.5, 6.8, and 8.2 kPa/mm, spanning the in vivo physiological and pathological mechanical landscape. Importantly, three of these gradients were found to be nondurotactic for human adipose-derived stem cells (hASCs), allowing the presentation of a continuous range of stiffnesses in a single well without the confounding effect of differential cell migration. Using these nondurotactic gradient gels, stiffness-dependent hASC morphology, migration, and differentiation were studied. Finally, the mechanosensitive proteins YAP, Lamin A/C, Lamin B, MRTF-A, and MRTF-B were analyzed on these gradients, providing higher-resolution data on stiffness-dependent expression and localization. PMID:28507138

Thermal Management Techniques for Oil-Free Turbomachinery Systems

NASA Technical Reports Server (NTRS)

Radil, Kevin; DellaCorte, Chris; Zeszotek, Michelle

2006-01-01

Tests were performed to evaluate three different methods of utilizing air to provide thermal management control for compliant journal foil air bearings. The effectiveness of the methods was based on bearing bulk temperature and axial thermal gradient reductions during air delivery. The first method utilized direct impingement of air on the inner surface of a hollow test journal during operation. The second, less indirect method achieved heat removal by blowing air inside the test journal to simulate air flowing axially through a hollow, rotating shaft. The third method emulated the most common approach to removing heat by forcing air axially through the bearing s support structure. Internal bearing temperatures were measured with three, type K thermocouples embedded in the bearing that measured general internal temperatures and axial thermal gradients. Testing was performed in a 1 atm, 260 C ambient environment with the bearing operating at 60 krpm and supporting a load of 222 N. Air volumetric flows of 0.06, 0.11, and 0.17 cubic meters per minute at approximately 150 to 200 C were used. The tests indicate that all three methods provide thermal management but at different levels of effectiveness. Axial cooling of the bearing support structure had a greater effect on bulk temperature for each air flow and demonstrated that the thermal gradients could be influenced by the directionality of the air flow. Direct air impingement on the journal's inside surface provided uniform reductions in both bulk temperature and thermal gradients. Similar to the direct method, indirect journal cooling had a uniform cooling effect on both bulk temperatures and thermal gradients but was the least effective of the three methods.

Test of Shi et al. Method to Infer the Magnetic Reconnection Geometry from Spacecraft Data: MHD Simulation with Guide Field and Antiparallel Kinetic Simulation

NASA Technical Reports Server (NTRS)

Denton, R.; Sonnerup, B. U. O.; Swisdak, M.; Birn, J.; Drake, J. F.; Heese, M.

2012-01-01

When analyzing data from an array of spacecraft (such as Cluster or MMS) crossing a site of magnetic reconnection, it is desirable to be able to accurately determine the orientation of the reconnection site. If the reconnection is quasi-two dimensional, there are three key directions, the direction of maximum inhomogeneity (the direction across the reconnection site), the direction of the reconnecting component of the magnetic field, and the direction of rough invariance (the "out of plane" direction). Using simulated spacecraft observations of magnetic reconnection in the geomagnetic tail, we extend our previous tests of the direction-finding method developed by Shi et al. (2005) and the method to determine the structure velocity relative to the spacecraft Vstr. These methods require data from four proximate spacecraft. We add artificial noise and calibration errors to the simulation fields, and then use the perturbed gradient of the magnetic field B and perturbed time derivative dB/dt, as described by Denton et al. (2010). Three new simulations are examined: a weakly three-dimensional, i.e., quasi-two-dimensional, MHD simulation without a guide field, a quasi-two-dimensional MHD simulation with a guide field, and a two-dimensional full dynamics kinetic simulation with inherent noise so that the apparent minimum gradient was not exactly zero, even without added artificial errors. We also examined variations of the spacecraft trajectory for the kinetic simulation. The accuracy of the directions found varied depending on the simulation and spacecraft trajectory, but all the directions could be found within about 10 for all cases. Various aspects of the method were examined, including how to choose averaging intervals and the best intervals for determining the directions and velocity. For the kinetic simulation, we also investigated in detail how the errors in the inferred gradient directions from the unmodified Shi et al. method (using the unperturbed gradient) depended on the amplitude of the calibration errors. For an accuracy of 3 for the maximum gradient direction, the calibration errors could be as large as 3% of reconnection magnetic field, while for the same accuracy for the minimum gradient direction, the calibration errors could only be as large as 0.03% of the reconnection magnetic field. These results suggest that the maximum gradient direction can normally be determined by the unmodified Shi et al. method, while the modified method or some other method must be used to accurately determine the minimum gradient direction. The structure velocity was found with magnitude accurate to 2% and direction accurate to within 5%.

M-step preconditioned conjugate gradient methods

NASA Technical Reports Server (NTRS)

Adams, L.

1983-01-01

Preconditioned conjugate gradient methods for solving sparse symmetric and positive finite systems of linear equations are described. Necessary and sufficient conditions are given for when these preconditioners can be used and an analysis of their effectiveness is given. Efficient computer implementations of these methods are discussed and results on the CYBER 203 and the Finite Element Machine under construction at NASA Langley Research Center are included.

Validation of continuous-wave Doppler echocardiographic measurements of mitral and tricuspid prosthetic valve gradients: a simultaneous Doppler-catheter study.

PubMed

Wilkins, G T; Gillam, L D; Kritzer, G L; Levine, R A; Palacios, I F; Weyman, A E

1986-10-01

For patients with stenotic native valves, the modified Bernoulli equation (delta P = 4V2) may be applied to Doppler-measured transvalvular velocities to yield an accurate estimate of transvalvular gradients. Although it would be useful if the same approach could be used for those with stenotic prosthetic valves, no previous study has validated the Doppler technique in this setting. We therefore recorded simultaneous continuous-wave Doppler flow profiles and transvalvular manometric gradients in 12 catheterized patients in whom all atrial and ventricular pressures were directly measured (transseptal left atrial catheterization and transthoracic ventricular puncture were performed where necessary). A total of 13 prostheses were studied: 11 mitral (seven porcine, three Starr-Edwards, and one Björk-Shiley) and two tricuspid (one porcine and one Björk-Shiley). The Doppler-determined mean gradient was calculated as the mean of the instantaneous gradients (delta P = 4V2) at 10 msec intervals throughout diastole. The correlation of simultaneous Doppler (DMG) and manometric mean gradients (MG) for the whole group (n = 13) demonstrated a highly significant relationship (MG = 1.07 DMG + 0.28; r = .96, p = .0001). The correlation was equally good for porcine valves alone (n = 8) (MG = 1.06 DMG + 0.55; r = .96, p = .001) and for mechanical valves alone (n = 5) (MG = 1.06 DMG - 0.04; r = .93, p = .02). In a subset of patients without regurgitation (n = 8), prosthetic valve areas were estimated by two Doppler methods originally described by Holen and Hatle, as well as by the invasive Gorlin method. As expected from theoretical considerations, a close correlation was not demonstrated between results of the Gorlin method and those of either Hatle's Doppler method (r = .65, fp = NS) or Holen's method (r = .14, p = NS). Comparison of the results of the two Doppler methods yielded a somewhat closer correlation (r = .73, p less than or equal to .05). These results suggest that in patients with disk-occluder, ball-occluder, and porcine prosthetic valves, Doppler estimates of transvalvular gradients are virtually identical to those obtained invasively.

Steepest descent with momentum for quadratic functions is a version of the conjugate gradient method.

PubMed

Bhaya, Amit; Kaszkurewicz, Eugenius

2004-01-01

It is pointed out that the so called momentum method, much used in the neural network literature as an acceleration of the backpropagation method, is a stationary version of the conjugate gradient method. Connections with the continuous optimization method known as heavy ball with friction are also made. In both cases, adaptive (dynamic) choices of the so called learning rate and momentum parameters are obtained using a control Liapunov function analysis of the system.

Optimization Based Efficiencies in First Order Reliability Analysis

NASA Technical Reports Server (NTRS)

Peck, Jeffrey A.; Mahadevan, Sankaran

2003-01-01

This paper develops a method for updating the gradient vector of the limit state function in reliability analysis using Broyden's rank one updating technique. In problems that use commercial code as a black box, the gradient calculations are usually done using a finite difference approach, which becomes very expensive for large system models. The proposed method replaces the finite difference gradient calculations in a standard first order reliability method (FORM) with Broyden's Quasi-Newton technique. The resulting algorithm of Broyden updates within a FORM framework (BFORM) is used to run several example problems, and the results compared to standard FORM results. It is found that BFORM typically requires fewer functional evaluations that FORM to converge to the same answer.

Exploration Opportunity Search of Near-earth Objects Based on Analytical Gradients

NASA Astrophysics Data System (ADS)

Ren, Yuan; Cui, Ping-Yuan; Luan, En-Jie

2008-07-01

The problem of search of opportunity for the exploration of near-earth minor objects is investigated. For rendezvous missions, the analytical gradients of the performance index with respect to the free parameters are derived using the variational calculus and the theory of state-transition matrix. After generating randomly some initial guesses in the search space, the performance index is optimized, guided by the analytical gradients, leading to the local minimum points representing the potential launch opportunities. This method not only keeps the global-search property of the traditional method, but also avoids the blindness in the latter, thereby increasing greatly the computing speed. Furthermore, with this method, the searching precision could be controlled effectively.

Search of exploration opportunity for near earth objects based on analytical gradients

NASA Astrophysics Data System (ADS)

Ren, Y.; Cui, P. Y.; Luan, E. J.

2008-01-01

The problem of searching for exploration opportunity of near Earth objects is investigated. For rendezvous missions, the analytical gradients of performance index with respect to free parameters are derived by combining the calculus of variation with the theory of state-transition matrix. Then, some initial guesses are generated random in the search space, and the performance index is optimized with the guidance of analytical gradients from these initial guesses. This method not only keeps the property of global search in traditional method, but also avoids the blindness in the traditional exploration opportunity search; hence, the computing speed could be increased greatly. Furthermore, by using this method, the search precision could be controlled effectively.

Policy Gradient Adaptive Dynamic Programming for Data-Based Optimal Control.

PubMed

Luo, Biao; Liu, Derong; Wu, Huai-Ning; Wang, Ding; Lewis, Frank L

2017-10-01

The model-free optimal control problem of general discrete-time nonlinear systems is considered in this paper, and a data-based policy gradient adaptive dynamic programming (PGADP) algorithm is developed to design an adaptive optimal controller method. By using offline and online data rather than the mathematical system model, the PGADP algorithm improves control policy with a gradient descent scheme. The convergence of the PGADP algorithm is proved by demonstrating that the constructed Q -function sequence converges to the optimal Q -function. Based on the PGADP algorithm, the adaptive control method is developed with an actor-critic structure and the method of weighted residuals. Its convergence properties are analyzed, where the approximate Q -function converges to its optimum. Computer simulation results demonstrate the effectiveness of the PGADP-based adaptive control method.

Gradient zone boundary control in salt gradient solar ponds

DOEpatents

Hull, John R.

1984-01-01

A method and apparatus for suppressing zone boundary migration in a salt gradient solar pond includes extending perforated membranes across the pond at the boundaries, between the convective and non-convective zones, the perforations being small enough in size to prevent individual turbulence disturbances from penetrating the hole, but being large enough to allow easy molecular diffusion of salt thereby preventing the formation of convective zones in the gradient layer. The total area of the perforations is a sizable fraction of the membrane area to allow sufficient salt diffusion while preventing turbulent entrainment into the gradient zone.

Gradient zone-boundary control in salt-gradient solar ponds

DOEpatents

Hull, J.R.

1982-09-29

A method and apparatus for suppressing zone boundary migration in a salt gradient solar pond includes extending perforated membranes across the pond at the boundaries, between the convective and non-convective zones, the perforations being small enough in size to prevent individual turbulence disturbances from penetrating the hole, but being large enough to allow easy molecular diffusion of salt thereby preventing the formation of convective zones in the gradient layer. The total area of the perforations is a sizeable fraction of the membrane area to allow sufficient salt diffusion while preventing turbulent entrainment into the gradient zone.

Study of Chemotaxis and Cell–Cell Interactions in Cancer with Microfluidic Devices

PubMed Central

Sai, Jiqing; Rogers, Matthew; Hockemeyer, Kathryn; Wikswo, John P.; Richmond, Ann

2017-01-01

Microfluidic devices have very broad applications in biological assays from simple chemotaxis assays to much more complicated 3D bioreactors. In this chapter, we describe the design and methods for performing chemotaxis assays using simple microfluidic chemotaxis chambers. With these devices, using real-time video microscopy we can examine the chemotactic responses of neutrophil-like cells under conditions of varying gradient steepness or flow rate and then utilize software programs to calculate the speed and angles of cell migration as gradient steepness and flow are varied. Considering the shearing force generated on the cells by the constant flow that is required to produce and maintain a stable gradient, the trajectories of the cell migration will reflect the net result of both shear force generated by flow and the chemotactic force resulting from the chemokine gradient. Moreover, the effects of mutations in chemokine receptors or the presence of inhibitors of intracellular signals required for gradient sensing can be evaluated in real time. We also describe a method to monitor intracellular signals required for cells to alter cell polarity in response to an abrupt switch in gradient direction. Lastly, we demonstrate an in vitro method for studying the interactions of human cancer cells with human endothelial cells, fibroblasts, and leukocytes, as well as environmental chemokines and cytokines, using 3D microbioreactors that mimic the in vivo microenvironment. PMID:26921940

AUTOMATED CELL SEGMENTATION WITH 3D FLUORESCENCE MICROSCOPY IMAGES.

PubMed

Kong, Jun; Wang, Fusheng; Teodoro, George; Liang, Yanhui; Zhu, Yangyang; Tucker-Burden, Carol; Brat, Daniel J

2015-04-01

A large number of cell-oriented cancer investigations require an effective and reliable cell segmentation method on three dimensional (3D) fluorescence microscopic images for quantitative analysis of cell biological properties. In this paper, we present a fully automated cell segmentation method that can detect cells from 3D fluorescence microscopic images. Enlightened by fluorescence imaging techniques, we regulated the image gradient field by gradient vector flow (GVF) with interpolated and smoothed data volume, and grouped voxels based on gradient modes identified by tracking GVF field. Adaptive thresholding was then applied to voxels associated with the same gradient mode where voxel intensities were enhanced by a multiscale cell filter. We applied the method to a large volume of 3D fluorescence imaging data of human brain tumor cells with (1) small cell false detection and missing rates for individual cells; and (2) trivial over and under segmentation incidences for clustered cells. Additionally, the concordance of cell morphometry structure between automated and manual segmentation was encouraging. These results suggest a promising 3D cell segmentation method applicable to cancer studies.

Chemotaxis of Amoeba proteus in the developing pH gradient within a pocket-like chamber studied with the computer assisted method.

PubMed

Korohoda, W; Golda, J; Sroka, J; Wojnarowicz, A; Jochym, P; Madeja, Z

1997-01-01

A new "U" shaped, pocket-like chamber was used to observe the chemotactic responses of individual cells. This method permits monitoring of both the development of the concentration gradient of a tested substance and cell locomotion. We investigated the chemotactic responses of Amoeba proteus and observed that the amoebae moved in positively and negatively developing [H+] gradients towards the solution of lower pH in a pH range 5.75-7.75. The chemotactic response of amoebae to [H+] gradients required the presence of extracellular calcium ions. It was blocked and random locomotion was restored by the replacement of calcium with magnesium in the cell medium. Time-lapse video recording and data processing were accomplished with computer-assisted methods. This made it possible to compare selected methods of data presentation and analysis for cells locomoting in isotropic and anisotropic conditions. The cell trajectories were determined and displayed in circular diagrams, lengths of cell tracks and final cell displacements were estimated and a few parameters characterizing cell locomotion were computed.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Won, Yoo Jai; Ki, Hyungson

A novel picosecond-laser pulsed laser deposition method has been developed for fabricating functionally graded films with pre-designed gradient profiles. Theoretically, the developed method is capable of precisely fabricating films with any thicknesses and any gradient profiles by controlling the laser beam powers for the two different targets based on the film composition profiles. As an implementation example, we have successfully constructed functionally graded diamond-like carbon films with six different gradient profiles: linear, quadratic, cubic, square root, cubic root, and sinusoidal. Energy dispersive X-ray spectroscopy is employed for investigating the chemical composition along the thickness of the film, and the depositionmore » profile and thickness errors are found to be less than 3% and 1.04%, respectively. To the best of the authors' knowledge, this is the first method for fabricating films with designed gradient profiles and has huge potential in many areas of coatings and films, including multifunctional optical films. We believe that this method is not only limited to the example considered in this study, but also can be applied to all material combinations as long as they can be deposited using the pulsed laser deposition technique.« less

Field-gradient partitioning for fracture and frictional contact in the material point method: Field-gradient partitioning for fracture and frictional contact in the material point method [Fracture and frictional contact in material point method using damage-field gradients for velocity-field partitioning

DOE Office of Scientific and Technical Information (OSTI.GOV)

Homel, Michael A.; Herbold, Eric B.

Contact and fracture in the material point method require grid-scale enrichment or partitioning of material into distinct velocity fields to allow for displacement or velocity discontinuities at a material interface. We present a new method which a kernel-based damage field is constructed from the particle data. The gradient of this field is used to dynamically repartition the material into contact pairs at each node. Our approach avoids the need to construct and evolve explicit cracks or contact surfaces and is therefore well suited to problems involving complex 3-D fracture with crack branching and coalescence. A straightforward extension of this approachmore » permits frictional ‘self-contact’ between surfaces that are initially part of a single velocity field, enabling more accurate simulation of granular flow, porous compaction, fragmentation, and comminution of brittle materials. Finally, numerical simulations of self contact and dynamic crack propagation are presented to demonstrate the accuracy of the approach.« less

Field-gradient partitioning for fracture and frictional contact in the material point method: Field-gradient partitioning for fracture and frictional contact in the material point method [Fracture and frictional contact in material point method using damage-field gradients for velocity-field partitioning

DOE PAGES

Homel, Michael A.; Herbold, Eric B.

2016-08-15

Contact and fracture in the material point method require grid-scale enrichment or partitioning of material into distinct velocity fields to allow for displacement or velocity discontinuities at a material interface. We present a new method which a kernel-based damage field is constructed from the particle data. The gradient of this field is used to dynamically repartition the material into contact pairs at each node. Our approach avoids the need to construct and evolve explicit cracks or contact surfaces and is therefore well suited to problems involving complex 3-D fracture with crack branching and coalescence. A straightforward extension of this approachmore » permits frictional ‘self-contact’ between surfaces that are initially part of a single velocity field, enabling more accurate simulation of granular flow, porous compaction, fragmentation, and comminution of brittle materials. Finally, numerical simulations of self contact and dynamic crack propagation are presented to demonstrate the accuracy of the approach.« less

Automatic correction of intensity nonuniformity from sparseness of gradient distribution in medical images.

PubMed

Zheng, Yuanjie; Grossman, Murray; Awate, Suyash P; Gee, James C

2009-01-01

We propose to use the sparseness property of the gradient probability distribution to estimate the intensity nonuniformity in medical images, resulting in two novel automatic methods: a non-parametric method and a parametric method. Our methods are easy to implement because they both solve an iteratively re-weighted least squares problem. They are remarkably accurate as shown by our experiments on images of different imaged objects and from different imaging modalities.

Automatic Correction of Intensity Nonuniformity from Sparseness of Gradient Distribution in Medical Images

PubMed Central

Zheng, Yuanjie; Grossman, Murray; Awate, Suyash P.; Gee, James C.

2013-01-01

We propose to use the sparseness property of the gradient probability distribution to estimate the intensity nonuniformity in medical images, resulting in two novel automatic methods: a non-parametric method and a parametric method. Our methods are easy to implement because they both solve an iteratively re-weighted least squares problem. They are remarkably accurate as shown by our experiments on images of different imaged objects and from different imaging modalities. PMID:20426191

FLUXNET2015 Dataset: Batteries included

NASA Astrophysics Data System (ADS)

Pastorello, G.; Papale, D.; Agarwal, D.; Trotta, C.; Chu, H.; Canfora, E.; Torn, M. S.; Baldocchi, D. D.

2016-12-01

The synthesis datasets have become one of the signature products of the FLUXNET global network. They are composed from contributions of individual site teams to regional networks, being then compiled into uniform data products - now used in a wide variety of research efforts: from plant-scale microbiology to global-scale climate change. The FLUXNET Marconi Dataset in 2000 was the first in the series, followed by the FLUXNET LaThuile Dataset in 2007, with significant additions of data products and coverage, solidifying the adoption of the datasets as a research tool. The FLUXNET2015 Dataset counts with another round of substantial improvements, including extended quality control processes and checks, use of downscaled reanalysis data for filling long gaps in micrometeorological variables, multiple methods for USTAR threshold estimation and flux partitioning, and uncertainty estimates - all of which accompanied by auxiliary flags. This "batteries included" approach provides a lot of information for someone who wants to explore the data (and the processing methods) in detail. This inevitably leads to a large number of data variables. Although dealing with all these variables might seem overwhelming at first, especially to someone looking at eddy covariance data for the first time, there is method to our madness. In this work we describe the data products and variables that are part of the FLUXNET2015 Dataset, and the rationale behind the organization of the dataset, covering the simplified version (labeled SUBSET), the complete version (labeled FULLSET), and the auxiliary products in the dataset.

A practitioner's tool for assessing glide crack activity

USGS Publications Warehouse

Hendrikx, Jordy; Peitzsch, Erich H.; Fagre, Daniel B.

2010-01-01

Glide cracks can result in full-depth glide avalanche release. Avalanches from glide cracks are notoriously difficult to forecast, but are a reoccurring problem in a number of different avalanche forecasting programs across a range of snow climates. Despite this, there is no consensus for how to best manage, mitigate, or even observe glide cracks and the potential resultant avalanche activity. It is thought that an increase in the rate of snow gliding occurs prior to full-depth avalanche activity, so frequent measuring of glide crack movement provides an index of instability. Therefore, a comprehensive avalanche program with glide crack avalanche activity, should at the least, undertake some form of direct monitoring of glide crack movement. In this paper we present a simple, cheap and repeatable method to track glide crack activity using a series of stakes, reflectors and a laser rangefinder (LaserTech TruPulse360B) linked to a GPS (Trimble Geo XH). We tested the methodology in April 2010, on a glide crack above the Going to the Sun Road in Glacier National Park, Montana, USA. This study suggests a new method to better track the development and movement of glide cracks. It is hoped that by introducing a workable method to easily record glide crack movement, avalanche forecasters will improve their understanding of when, or if, avalanche activity will ensue. Our initial results suggest that these new observations, when combined with local micrometeorological data will result in improved process understanding and forecasting of these phenomena.

Quantitative Assessment of Desertification Using Landsat Data on a Regional Scale – A Case Study in the Ordos Plateau, China

PubMed Central

Xu, Duanyang; Kang, Xiangwu; Qiu, Dongsheng; Zhuang, Dafang; Pan, Jianjun

2009-01-01

Desertification is a serious threat to the ecological environment and social economy in our world and there is a pressing need to develop a reasonable and reproducible method to assess it at different scales. In this paper, the Ordos Plateau in China was selected as the research region and a quantitative method for desertification assessment was developed by using Landsat MSS and TM/ETM+ data on a regional scale. In this method, NDVI, MSDI and land surface albedo were selected as assessment indicators of desertification to represent land surface conditions from vegetation biomass, landscape pattern and micrometeorology. Based on considering the effects of vegetation type and time of images acquired on assessment indictors, assessing rule sets were built and a decision tree approach was used to assess desertification of Ordos Plateau in 1980, 1990 and 2000. The average overall accuracy of three periods was higher than 90%. The results showed that although some local places of Ordos Plateau experienced an expanding trend of desertification, the trend of desertification of Ordos Plateau was an overall decrease in from 1980 to 2000. By analyzing the causes of desertification processes, it was found that climate change could benefit for the reversion of desertification from 1980 to 1990 at a regional scale and human activities might explain the expansion of desertification in this period; however human conservation activities were the main driving factor that induced the reversion of desertification from 1990 to 2000. PMID:22573984

Apparatus for investigating the reactions of soft-bodied invertebrates to controlled humidity gradients

PubMed Central

Russell, Joshua; Pierce-Shimomura, Jonathan T.

2015-01-01

Background While many studies have assayed behavioral responses of animals to chemical, temperature and light gradients, fewer studies have assayed how animals respond to humidity gradients. Our novel humidity chamber has allowed us to study the neuromolecular basis of humidity sensation in the nematode Caenorhabditis elegans (Russell et al. 2014). New Method We describe an easy-to-construct, low-cost humidity chamber to assay the behavior of small animals, including soft-bodied invertebrates, in controlled humidity gradients. Results We show that our humidity-chamber design is amenable to soft-bodied invertebrates and can produce reliable gradients ranging 0.3–8% RH/cm across a 9-cm long x 7.5-cm wide gel-covered arena. Comparison with Existing Method(s) Previous humidity chambers relied on circulating dry and moist air to produce a steep humidity gradient in a small arena (e.g. Sayeed & Benzer, 1996). To remove the confound of moving air that may elicit mechanical responses independent of humidity responses, our chamber controlled the humidity gradient using reservoirs of hygroscopic materials. Additionally, to better observe the behavioral mechanisms for humidity responses, our chamber provided a larger arena. Although similar chambers have been described previously, these approaches were not suitable for soft-bodied invertebrates or for easy imaging of behavior because they required that animals move across wire or fabric mesh. Conclusion The general applicability of our humidity chamber overcomes limitations of previous designs and opens the door to observe the behavioral responses of soft-bodied invertebrates, including genetically powerful C. elegans and Drosophila larvae. PMID:25176025

A blind deconvolution method based on L1/L2 regularization prior in the gradient space

NASA Astrophysics Data System (ADS)

Cai, Ying; Shi, Yu; Hua, Xia

2018-02-01

In the process of image restoration, the result of image restoration is very different from the real image because of the existence of noise, in order to solve the ill posed problem in image restoration, a blind deconvolution method based on L1/L2 regularization prior to gradient domain is proposed. The method presented in this paper first adds a function to the prior knowledge, which is the ratio of the L1 norm to the L2 norm, and takes the function as the penalty term in the high frequency domain of the image. Then, the function is iteratively updated, and the iterative shrinkage threshold algorithm is applied to solve the high frequency image. In this paper, it is considered that the information in the gradient domain is better for the estimation of blur kernel, so the blur kernel is estimated in the gradient domain. This problem can be quickly implemented in the frequency domain by fast Fast Fourier Transform. In addition, in order to improve the effectiveness of the algorithm, we have added a multi-scale iterative optimization method. This paper proposes the blind deconvolution method based on L1/L2 regularization priors in the gradient space can obtain the unique and stable solution in the process of image restoration, which not only keeps the edges and details of the image, but also ensures the accuracy of the results.

Assessment of microscale spatio-temporal variation of air pollution at an urban hotspot in Madrid (Spain) through an extensive field campaign

NASA Astrophysics Data System (ADS)

Borge, Rafael; Narros, Adolfo; Artíñano, Begoña; Yagüe, Carlos; Gómez-Moreno, Francisco Javier; de la Paz, David; Román-Cascón, Carlos; Díaz, Elías; Maqueda, Gregorio; Sastre, Mariano; Quaassdorff, Christina; Dimitroulopoulou, Chrysanthi; Vardoulakis, Sotiris

2016-09-01

Poor urban air quality is one of the main environmental concerns worldwide due to its implications for population exposure and health-related issues. However, the development of effective abatement strategies in cities requires a consistent and holistic assessment of air pollution processes, taking into account all the relevant scales within a city. This contribution presents the methodology and main results of an intensive experimental campaign carried out in a complex pollution hotspot in Madrid (Spain) under the TECNAIRE-CM research project, which aimed at understanding the microscale spatio-temporal variation of ambient concentration levels in areas where high pollution values are recorded. A variety of instruments were deployed during a three-week field campaign to provide detailed information on meteorological and micrometeorological parameters and spatio-temporal variations of the most relevant pollutants (NO2 and PM) along with relevant information needed to simulate pedestrian fluxes. The results show the strong dependence of ambient concentrations on local emissions and meteorology that turns out in strong spatial and temporal variations, with gradients up to 2 μg m-3 m-1 for NO2 and 55 μg m-3 min-1 for PM10. Pedestrian exposure to these pollutants also presents strong variations temporally and spatially but it concentrates on pedestrian crossings and bus stops. The analysis of the results show that the high concentration levels found in urban hotspots depend on extremely complex dynamic processes that cannot be captured by routinely measurements made by air quality monitoring stations used for regulatory compliance assessment. The large influence from local traffic in the concentration fields highlights the need for a detailed description of specific variables that determine emissions and dispersion at microscale level. This also indicates that city-scale interventions may be complemented with local control measures and exposure management, to improve air quality and reduce air pollution health effects more effectively.

Aircraft trace gas measurements during the London 2012 Olympics: Air quality and emission fluxes derived from sampling upwind and downwind of a megacity

NASA Astrophysics Data System (ADS)

Allen, G.; O'Shea, S.; Muller, J.; Jones, B.; O'Sullivan, D.; Lee, J. D.; Bauguitte, S.; Gallagher, M. W.; Percival, C.; Barratt, B.; McQuaid, J. B.; Illingworth, S.

2013-12-01

This study presents airborne in situ and remote sensing measurements recorded during July and August 2012, across the period of the London 2012 Summer Olympics and simultaneous with the Clear air for London (ClearfLo) ground-based measurement and modelling campaign. Through long-term (2-year) and intensive observation periods (Winter 2011 and Summer 2012), the ClearfLo programme aims to better understand emissions, as well as the chemical, dynamical and micro-meteorological processes which modulate air quality in the London urban environment - an important risk factor for both acute and chronic health effects. The work presented here focuses on two contrasting case studies within the summer ClearfLo period: 30 July 2012 and 9 August 2012, representing relatively clean background and polluted background cases, respectively, and characterised by well-mixed Atlantic westerly maritime inflow in the former and stagnant air (high pressure) in the latter. Measurements of CO, CO2, CH4, N2O, O3, HCN, and other gases measured on board the UK Facility for Airborne Atmospheric Measurement (FAAM) BAe-146 aircraft will be presented and interpreted, with emphasis on observed concentration gradients and tracer-tracer correlations as well as airmass vertical structure and airmass history upwind and downwind of central London in each case. By applying a simple advective model and making use of vertically resolved thermodynamic and composition data, we are able to derive emission strengths for these gases that are representative of the total enclosed surface area. Example emissions for these two cases range between 6x105 kg(C)/hr and 9x105 kg(C)/hr for CO2, and ~0.6x105 kg(C)/hr for CH4. This airborne sampling methodology highlights the unique utility of aircraft measurements to routinely and climatologically characterise emissions from area sources such as cities, and points to future missions to target localised hotspots and distributed point sources.

Parameter studies on the energy balance closure problem using large-eddy simulation

NASA Astrophysics Data System (ADS)

De Roo, Frederik; Banerjee, Tirtha; Mauder, Matthias

2017-04-01

The imbalance of the surface energy budget in eddy-covariance measurements is still a pending problem. A possible cause is the presence of land surface heterogeneity. Heterogeneities of the boundary layer scale or larger are most effective in influencing the boundary layer turbulence, and large-eddy simulations have shown that secondary circulations within the boundary layer can affect the surface energy budget. However, the precise influence of the surface characteristics on the energy imbalance and its partitioning is still unknown. To investigate the influence of surface variables on all the components of the flux budget under convective conditions, we set up a systematic parameter study by means of large-eddy simulation. For the study we use a virtual control volume approach, and we focus on idealized heterogeneity by considering spatially variable surface fluxes. The surface fluxes vary locally in intensity and these patches have different length scales. The main focus lies on heterogeneities of length scales of the kilometer scale and one decade smaller. For each simulation, virtual measurement towers are positioned at functionally different positions. We discriminate between the locally homogeneous towers, located within land use patches, with respect to the more heterogeneous towers, and find, among others, that the flux-divergence and the advection are strongly linearly related within each class. Furthermore, we seek correlators for the energy balance ratio and the energy residual in the simulations. Besides the expected correlation with measurable atmospheric quantities such as the friction velocity, boundary-layer depth and temperature and moisture gradients, we have also found an unexpected correlation with the temperature difference between sonic temperature and surface temperature. In additional simulations with a large number of virtual towers, we investigate higher order correlations, which can be linked to secondary circulations. In a companion presentation (EGU2017-2130) these correlations are investigated and confirmed with the help of micrometeorological measurements from the TERENO sites where the effects of landscape scale surface heterogeneities are deemed to be important.

The application of EDTA in drug delivery systems: doxorubicin liposomes loaded via NH4EDTA gradient

PubMed Central

Song, Yanzhi; Huang, Zhenjun; Song, Yang; Tian, Qingjing; Liu, Xinrong; She, Zhennan; Jiao, Jiao; Lu, Eliza; Deng, Yihui

2014-01-01

The applications of ethylenediaminetetraacetic acid (EDTA) have been expanded from the treatment of heavy metal poisoning to chelation therapies for atherosclerosis, heart disease, and cancers, in which EDTA reduces morbidity and mortality by chelating toxic metal ions. In this study, EDTA was used in a drug delivery system by adopting an NH4EDTA gradient method to load doxorubicin into liposomes with the goal of increasing therapeutic effects and decreasing drug-related cytotoxicity. The particle size of the optimum NH4EDTA gradient liposomes was 79.4±1.87 nm, and the entrapment efficiency was 95.54%±0.59%. In vitro studies revealed that liposomes prepared using an NH4EDTA gradient possessed long-term stability and delayed drug release. The in vivo studies also showed the superiority of the new doxorubicin formulation. Compared with an equivalent drug dose (5 mg/kg) prepared by (NH4)2SO4 gradient, NH4EDTA gradient liposomes showed no significant differences in tumor inhibition ratio, but cardiotoxicity and liposome-related immune organ damage were lower, and no drug-related deaths were observed. These results show that use of the NH4EDTA gradient method to load doxorubicin into liposomes could significantly reduce drug toxicity without influencing antitumor activity. PMID:25120359

Arbitrary magnetic field gradient waveform correction using an impulse response based pre-equalization technique.

PubMed

Goora, Frédéric G; Colpitts, Bruce G; Balcom, Bruce J

2014-01-01

The time-varying magnetic fields used in magnetic resonance applications result in the induction of eddy currents on conductive structures in the vicinity of both the sample under investigation and the gradient coils. These eddy currents typically result in undesired degradations of image quality for MRI applications. Their ubiquitous nature has resulted in the development of various approaches to characterize and minimize their impact on image quality. This paper outlines a method that utilizes the magnetic field gradient waveform monitor method to directly measure the temporal evolution of the magnetic field gradient from a step-like input function and extracts the system impulse response. With the basic assumption that the gradient system is sufficiently linear and time invariant to permit system theory analysis, the impulse response is used to determine a pre-equalized (optimized) input waveform that provides a desired gradient response at the output of the system. An algorithm has been developed that calculates a pre-equalized waveform that may be accurately reproduced by the amplifier (is physically realizable) and accounts for system limitations including system bandwidth, amplifier slew rate capabilities, and noise inherent in the initial measurement. Significant improvements in magnetic field gradient waveform fidelity after pre-equalization have been realized and are summarized. Copyright © 2013 Elsevier Inc. All rights reserved.

Subsurface temperatures and geothermal gradients on the north slope of Alaska

USGS Publications Warehouse

Collett, T.S.; Bird, K.J.; Magoon, L.B.

1993-01-01

On the North Slope of Alaska, geothermal gradient data are available from high-resolution, equilibrated well-bore surveys and from estimates based on well-log identification of the base of ice-bearing permafrost. A total of 46 North Slope wells, considered to be in or near thermal equilibrium, have been surveyed with high-resolution temperatures devices and geothermal gradients can be interpreted directly from these recorded temperature profiles. To augment the limited North Slope temperature data base, a new method of evaluating local geothermal gradients has been developed. In this method, a series of well-log picks for the base of the ice-bearing permafrost from 102 wells have been used, along with regional temperature constants derived from the high-resolution stabilized well-bore temperature surveys, to project geothermal gradients. Geothermal gradients calculated from the high-resolution temperature surveys generally agree with those projected from known ice-bearing permafrost depths over most of the North Slope. Values in the ice-bearing permafrost range from ??? 1.5??C 100 m in the Prudhoe Bay area to ??? 4.5??C 100 m in the east-central portion of the National Petroleum Reserve in Alaska. Geothermal gradients below the ice-bearing permafrost sequence range from ??? 1.6??C 100 m to ??? 5.2??C 100 m. ?? 1993.

Enrichment of undifferentiated type a spermatogonia from goat testis using discontinuous percoll density gradient and differential plating.

PubMed

Heidari, Banafsheh; Gifani, Minoo; Shirazi, Abolfazl; Zarnani, Amir-Hassan; Baradaran, Behzad; Naderi, Mohammad Mehdi; Behzadi, Bahareh; Borjian-Boroujeni, Sara; Sarvari, Ali; Lakpour, Niknam; Akhondi, Mohammad Mehdi

2014-04-01

The well documented source for adult multipotent stem cells is Spermatogonial Stem Cells (SSCs). They are the foundation of spermatogenesis in the testis throughout adult life by balancing self-renewal and differentiation. The aim of this study was to assess the effect of percoll density gradient and differential plating on enrichment of undifferentiated type A spermatogonia in dissociated cellular suspension of goat testes. Additionally, we evaluated the separated fractions of the gradients in percoll and samples in differential plating at different times for cell number, viability and purification rate of goat SSCs in culture. Testicular cells were successfully isolated from one month old goat testis using two-step enzymatic digestion and followed by two purification protocols, differential plating with different times of culture (3, 4, 5, and 6 hr) and discontinuous percoll density with different gradients (20, 28, 30, and 32%). The difference of percentage of undifferentiated SSCs (PGP9.5 positive) in each method was compared using ANOVA and comparison between the highest percentage of corresponding value between two methods was carried out by t-test using Sigma Stat (ver. 3.5). The highest PGP9.5 (94.6±0.4) and the lowest c-Kit positive (25.1±0.7) in Percoll method was significantly (p ≤ 0.001) achieved in 32% percoll gradient. While the corresponding rates in differential plating method for the highest PGP9.5 positive cells (81.3±1.1) and lowest c-Kit (17.1±1.4) was achieved after 5 hr culturing (p < 0.001). The enrichment of undifferentiated type A spermatogonia using Percoll was more efficient than differential plating method (p < 0.001). Percoll density gradient and differential plating were efficient and fast methods for enrichment of type A spermatogonial stem cells from goat testes.

Detection, localization and classification of multiple dipole-like magnetic sources using magnetic gradient tensor data

NASA Astrophysics Data System (ADS)

Gang, Yin; Yingtang, Zhang; Hongbo, Fan; Zhining, Li; Guoquan, Ren

2016-05-01

We have developed a method for automatic detection, localization and classification (DLC) of multiple dipole sources using magnetic gradient tensor data. First, we define modified tilt angles to estimate the approximate horizontal locations of the multiple dipole-like magnetic sources simultaneously and detect the number of magnetic sources using a fixed threshold. Secondly, based on the isotropy of the normalized source strength (NSS) response of a dipole, we obtain accurate horizontal locations of the dipoles. Then the vertical locations are calculated using magnitude magnetic transforms of magnetic gradient tensor data. Finally, we invert for the magnetic moments of the sources using the measured magnetic gradient tensor data and forward model. Synthetic and field data sets demonstrate effectiveness and practicality of the proposed method.

ONRASIA Scientific Information Bulletin. Volume 8, Number 3, July- September 1993

DTIC Science & Technology

1993-09-01

the Ninth Symposium on Preconditioned Conjugate Dr. Steven F. Ashby Gradient Methods , which he organized. Computing Sciences Department Computing...ditioned Conjugate Gradient Methods , held at Keio chines and is currently a topic of considerable University (Yokohama). During this meeting, I interest...in the United States. In Japan, on the other discussed iterative methods for linear systems with hand, this technique does not appear to be too well

Effect of exosome isolation methods on physicochemical properties of exosomes and clearance of exosomes from the blood circulation.

PubMed

Yamashita, Takuma; Takahashi, Yuki; Nishikawa, Makiya; Takakura, Yoshinobu

2016-01-01

Exosomes, which are expected to be delivery systems for biomolecules such as nucleic acids, are collected by several methods. However, the effect of exosome isolation methods on the characteristics of exosomes as drug carriers, such as recovery efficiency after sterile filtration and pharmacokinetics, has not been investigated despite the importance of these characteristics for the development of exosome-based delivery systems. In the present study, exosomes collected from murine melanoma B16-BL6 cells by several methods were compared with respect to dispersibility, recovery rate after filtering, and clearance from the blood circulation in mice. The exosomes were collected by three ultracentrifugation-based methods: simple ultracentrifugation/pelleting (pelleting method), ultracentrifugation with an iodixanol cushion (cushion method), and ultracentrifugation on an iodixanol density gradient (gradient method). The isolation methods had little effect on the particle number of exosomes. In contrast, transmission electron microscopy observation and size distribution measurement using tunable resistive pulse sensing indicated that the exosomes of the gradient method were more dispersed than the others. The exosomes were labeled with Gaussia luciferase and intravenously injected into mice. Clearance of injected exosomes from the blood circulation did not significantly change with isolation methods. When the exosomes were filtered using a 0.2-μm filter, the recovery rate was 82% for the exosomes of the gradient method, whereas it was less than 50% for the others. These results indicate that the exosome isolation method markedly affects the dispersibility and filtration efficiency of the exosomes. Copyright © 2015 Elsevier B.V. All rights reserved.

A mixed method Poisson solver for three-dimensional self-gravitating astrophysical fluid dynamical systems

NASA Technical Reports Server (NTRS)

Duncan, Comer; Jones, Jim

1993-01-01

A key ingredient in the simulation of self-gravitating astrophysical fluid dynamical systems is the gravitational potential and its gradient. This paper focuses on the development of a mixed method multigrid solver of the Poisson equation formulated so that both the potential and the Cartesian components of its gradient are self-consistently and accurately generated. The method achieves this goal by formulating the problem as a system of four equations for the gravitational potential and the three Cartesian components of the gradient and solves them using a distributed relaxation technique combined with conventional full multigrid V-cycles. The method is described, some tests are presented, and the accuracy of the method is assessed. We also describe how the method has been incorporated into our three-dimensional hydrodynamics code and give an example of an application to the collision of two stars. We end with some remarks about the future developments of the method and some of the applications in which it will be used in astrophysics.

Analytical Energy Gradients for Excited-State Coupled-Cluster Methods

NASA Astrophysics Data System (ADS)

Wladyslawski, Mark; Nooijen, Marcel

The equation-of-motion coupled-cluster (EOM-CC) and similarity transformed equation-of-motion coupled-cluster (STEOM-CC) methods have been firmly established as accurate and routinely applicable extensions of single-reference coupled-cluster theory to describe electronically excited states. An overview of these methods is provided, with emphasis on the many-body similarity transform concept that is the key to a rationalization of their accuracy. The main topic of the paper is the derivation of analytical energy gradients for such non-variational electronic structure approaches, with an ultimate focus on obtaining their detailed algebraic working equations. A general theoretical framework using Lagrange's method of undetermined multipliers is presented, and the method is applied to formulate the EOM-CC and STEOM-CC gradients in abstract operator terms, following the previous work in [P.G. Szalay, Int. J. Quantum Chem. 55 (1995) 151] and [S.R. Gwaltney, R.J. Bartlett, M. Nooijen, J. Chem. Phys. 111 (1999) 58]. Moreover, the systematics of the Lagrange multiplier approach is suitable for automation by computer, enabling the derivation of the detailed derivative equations through a standardized and direct procedure. To this end, we have developed the SMART (Symbolic Manipulation and Regrouping of Tensors) package of automated symbolic algebra routines, written in the Mathematica programming language. The SMART toolkit provides the means to expand, differentiate, and simplify equations by manipulation of the detailed algebraic tensor expressions directly. The Lagrangian multiplier formulation establishes a uniform strategy to perform the automated derivation in a standardized manner: A Lagrange multiplier functional is constructed from the explicit algebraic equations that define the energy in the electronic method; the energy functional is then made fully variational with respect to all of its parameters, and the symbolic differentiations directly yield the explicit equations for the wavefunction amplitudes, the Lagrange multipliers, and the analytical gradient via the perturbation-independent generalized Hellmann-Feynman effective density matrix. This systematic automated derivation procedure is applied to obtain the detailed gradient equations for the excitation energy (EE-), double ionization potential (DIP-), and double electron affinity (DEA-) similarity transformed equation-of-motion coupled-cluster singles-and-doubles (STEOM-CCSD) methods. In addition, the derivatives of the closed-shell-reference excitation energy (EE-), ionization potential (IP-), and electron affinity (EA-) equation-of-motion coupled-cluster singles-and-doubles (EOM-CCSD) methods are derived. Furthermore, the perturbative EOM-PT and STEOM-PT gradients are obtained. The algebraic derivative expressions for these dozen methods are all derived here uniformly through the automated Lagrange multiplier process and are expressed compactly in a chain-rule/intermediate-density formulation, which facilitates a unified modular implementation of analytic energy gradients for CCSD/PT-based electronic methods. The working equations for these analytical gradients are presented in full detail, and their factorization and implementation into an efficient computer code are discussed.

Two New PRP Conjugate Gradient Algorithms for Minimization Optimization Models.

PubMed

Yuan, Gonglin; Duan, Xiabin; Liu, Wenjie; Wang, Xiaoliang; Cui, Zengru; Sheng, Zhou

2015-01-01

Two new PRP conjugate Algorithms are proposed in this paper based on two modified PRP conjugate gradient methods: the first algorithm is proposed for solving unconstrained optimization problems, and the second algorithm is proposed for solving nonlinear equations. The first method contains two aspects of information: function value and gradient value. The two methods both possess some good properties, as follows: 1) βk ≥ 0 2) the search direction has the trust region property without the use of any line search method 3) the search direction has sufficient descent property without the use of any line search method. Under some suitable conditions, we establish the global convergence of the two algorithms. We conduct numerical experiments to evaluate our algorithms. The numerical results indicate that the first algorithm is effective and competitive for solving unconstrained optimization problems and that the second algorithm is effective for solving large-scale nonlinear equations.

Two New PRP Conjugate Gradient Algorithms for Minimization Optimization Models

PubMed Central

Yuan, Gonglin; Duan, Xiabin; Liu, Wenjie; Wang, Xiaoliang; Cui, Zengru; Sheng, Zhou

2015-01-01

Two new PRP conjugate Algorithms are proposed in this paper based on two modified PRP conjugate gradient methods: the first algorithm is proposed for solving unconstrained optimization problems, and the second algorithm is proposed for solving nonlinear equations. The first method contains two aspects of information: function value and gradient value. The two methods both possess some good properties, as follows: 1)β k ≥ 0 2) the search direction has the trust region property without the use of any line search method 3) the search direction has sufficient descent property without the use of any line search method. Under some suitable conditions, we establish the global convergence of the two algorithms. We conduct numerical experiments to evaluate our algorithms. The numerical results indicate that the first algorithm is effective and competitive for solving unconstrained optimization problems and that the second algorithm is effective for solving large-scale nonlinear equations. PMID:26502409

3D inversion of full gravity gradient tensor data in spherical coordinate system using local north-oriented frame

NASA Astrophysics Data System (ADS)

Zhang, Yi; Wu, Yulong; Yan, Jianguo; Wang, Haoran; Rodriguez, J. Alexis P.; Qiu, Yue

2018-04-01

In this paper, we propose an inverse method for full gravity gradient tensor data in the spherical coordinate system. As opposed to the traditional gravity inversion in the Cartesian coordinate system, our proposed method takes the curvature of the Earth, the Moon, or other planets into account, using tesseroid bodies to produce gravity gradient effects in forward modeling. We used both synthetic and observed datasets to test the stability and validity of the proposed method. Our results using synthetic gravity data show that our new method predicts the depth of the density anomalous body efficiently and accurately. Using observed gravity data for the Mare Smythii area on the moon, the density distribution of the crust in this area reveals its geological structure. These results validate the proposed method and potential application for large area data inversion of planetary geological structures.[Figure not available: see fulltext.

Gradient Dynamics and Entropy Production Maximization

NASA Astrophysics Data System (ADS)

Janečka, Adam; Pavelka, Michal

2018-01-01

We compare two methods for modeling dissipative processes, namely gradient dynamics and entropy production maximization. Both methods require similar physical inputs-how energy (or entropy) is stored and how it is dissipated. Gradient dynamics describes irreversible evolution by means of dissipation potential and entropy, it automatically satisfies Onsager reciprocal relations as well as their nonlinear generalization (Maxwell-Onsager relations), and it has statistical interpretation. Entropy production maximization is based on knowledge of free energy (or another thermodynamic potential) and entropy production. It also leads to the linear Onsager reciprocal relations and it has proven successful in thermodynamics of complex materials. Both methods are thermodynamically sound as they ensure approach to equilibrium, and we compare them and discuss their advantages and shortcomings. In particular, conditions under which the two approaches coincide and are capable of providing the same constitutive relations are identified. Besides, a commonly used but not often mentioned step in the entropy production maximization is pinpointed and the condition of incompressibility is incorporated into gradient dynamics.

Induced electric currents in the Alaska oil pipeline measured by gradient, fluxgate, and SQUID magnetometers

NASA Technical Reports Server (NTRS)

Campbell, W. H.; Zimmerman, J. E.

1979-01-01

The field gradient method for observing the electric currents in the Alaska pipeline provided consistent values for both the fluxgate and SQUID method of observation. These currents were linearly related to the regularly measured electric and magnetic field changes. Determinations of pipeline current were consistent with values obtained by a direct connection, current shunt technique at a pipeline site about 9.6 km away. The gradient method has the distinct advantage of portability and buried- pipe capability. Field gradients due to the pipe magnetization, geological features, or ionospheric source currents do not seem to contribute a measurable error to such pipe current determination. The SQUID gradiometer is inherently sensitive enough to detect very small currents in a linear conductor at 10 meters, or conversely, to detect small currents of one amphere or more at relatively great distances. It is fairly straightforward to achieve imbalance less than one part in ten thousand, and with extreme care, one part in one million or better.

2D joint inversion of CSAMT and magnetic data based on cross-gradient theory

NASA Astrophysics Data System (ADS)

Wang, Kun-Peng; Tan, Han-Dong; Wang, Tao

2017-06-01

A two-dimensional forward and backward algorithm for the controlled-source audio-frequency magnetotelluric (CSAMT) method is developed to invert data in the entire region (near, transition, and far) and deal with the effects of artificial sources. First, a regularization factor is introduced in the 2D magnetic inversion, and the magnetic susceptibility is updated in logarithmic form so that the inversion magnetic susceptibility is always positive. Second, the joint inversion of the CSAMT and magnetic methods is completed with the introduction of the cross gradient. By searching for the weight of the cross-gradient term in the objective function, the mutual influence between two different physical properties at different locations are avoided. Model tests show that the joint inversion based on cross-gradient theory offers better results than the single-method inversion. The 2D forward and inverse algorithm for CSAMT with source can effectively deal with artificial sources and ensures the reliability of the final joint inversion algorithm.

Image reconstruction from few-view CT data by gradient-domain dictionary learning.

PubMed

Hu, Zhanli; Liu, Qiegen; Zhang, Na; Zhang, Yunwan; Peng, Xi; Wu, Peter Z; Zheng, Hairong; Liang, Dong

2016-05-21

Decreasing the number of projections is an effective way to reduce the radiation dose exposed to patients in medical computed tomography (CT) imaging. However, incomplete projection data for CT reconstruction will result in artifacts and distortions. In this paper, a novel dictionary learning algorithm operating in the gradient-domain (Grad-DL) is proposed for few-view CT reconstruction. Specifically, the dictionaries are trained from the horizontal and vertical gradient images, respectively and the desired image is reconstructed subsequently from the sparse representations of both gradients by solving the least-square method. Since the gradient images are sparser than the image itself, the proposed approach could lead to sparser representations than conventional DL methods in the image-domain, and thus a better reconstruction quality is achieved. To evaluate the proposed Grad-DL algorithm, both qualitative and quantitative studies were employed through computer simulations as well as real data experiments on fan-beam and cone-beam geometry. The results show that the proposed algorithm can yield better images than the existing algorithms.

Designing in vivo concentration gradients with discrete controlled release: a computational model

NASA Astrophysics Data System (ADS)

Walker, Edgar Y.; Barbour, Dennis L.

2010-08-01

One promising neurorehabilitation therapy involves presenting neurotrophins directly into the brain to induce growth of new neural connections. The precise control of neurotrophin concentration gradients deep within neural tissue that would be necessary for such a therapy is not currently possible, however. Here we evaluate the theoretical potential of a novel method of drug delivery, discrete controlled release (DCR), to control effective neurotrophin concentration gradients in an isotropic region of neocortex. We do so by constructing computational models of neurotrophin concentration profiles resulting from discrete release locations into the cortex and then optimizing their design for uniform concentration gradients. The resulting model indicates that by rationally selecting initial neurotrophin concentrations for drug-releasing electrode coatings in a square 16-electrode array, nearly uniform concentration gradients (i.e. planar concentration profiles) from one edge of the electrode array to the other should be obtainable. DCR therefore represents a promising new method of precisely directing neuronal growth in vivo over a wider spatial profile than would be possible with single release points.

Density functional theory for molecular and periodic systems using density fitting and continuous fast multipole method: Analytical gradients.

PubMed

Łazarski, Roman; Burow, Asbjörn Manfred; Grajciar, Lukáš; Sierka, Marek

2016-10-30

A full implementation of analytical energy gradients for molecular and periodic systems is reported in the TURBOMOLE program package within the framework of Kohn-Sham density functional theory using Gaussian-type orbitals as basis functions. Its key component is a combination of density fitting (DF) approximation and continuous fast multipole method (CFMM) that allows for an efficient calculation of the Coulomb energy gradient. For exchange-correlation part the hierarchical numerical integration scheme (Burow and Sierka, Journal of Chemical Theory and Computation 2011, 7, 3097) is extended to energy gradients. Computational efficiency and asymptotic O(N) scaling behavior of the implementation is demonstrated for various molecular and periodic model systems, with the largest unit cell of hematite containing 640 atoms and 19,072 basis functions. The overall computational effort of energy gradient is comparable to that of the Kohn-Sham matrix formation. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

Accurate pressure gradient calculations in hydrostatic atmospheric models

NASA Technical Reports Server (NTRS)

Carroll, John J.; Mendez-Nunez, Luis R.; Tanrikulu, Saffet

1987-01-01

A method for the accurate calculation of the horizontal pressure gradient acceleration in hydrostatic atmospheric models is presented which is especially useful in situations where the isothermal surfaces are not parallel to the vertical coordinate surfaces. The present method is shown to be exact if the potential temperature lapse rate is constant between the vertical pressure integration limits. The technique is applied to both the integration of the hydrostatic equation and the computation of the slope correction term in the horizontal pressure gradient. A fixed vertical grid and a dynamic grid defined by the significant levels in the vertical temperature distribution are employed.

Error measure comparison of currently employed dose-modulation schemes for e-beam proximity effect control

NASA Astrophysics Data System (ADS)

Peckerar, Martin C.; Marrian, Christie R.

1995-05-01

Standard matrix inversion methods of e-beam proximity correction are compared with a variety of pseudoinverse approaches based on gradient descent. It is shown that the gradient descent methods can be modified using 'regularizers' (terms added to the cost function minimized during gradient descent). This modification solves the 'negative dose' problem in a mathematically sound way. Different techniques are contrasted using a weighted error measure approach. It is shown that the regularization approach leads to the highest quality images. In some cases, ignoring negative doses yields results which are worse than employing an uncorrected dose file.

Møller-Plesset perturbation theory gradient in the generalized hybrid orbital quantum mechanical and molecular mechanical method

NASA Astrophysics Data System (ADS)

Jung, Jaewoon; Sugita, Yuji; Ten-no, S.

2010-02-01

An analytic gradient expression is formulated and implemented for the second-order Møller-Plesset perturbation theory (MP2) based on the generalized hybrid orbital QM/MM method. The method enables us to obtain an accurate geometry at a reasonable computational cost. The performance of the method is assessed for various isomers of alanine dipepetide. We also compare the optimized structures of fumaramide-derived [2]rotaxane and cAMP-dependent protein kinase with experiment.

Applications of thermal-gradients method for the optimization of α-amylase crystallization conditions based on dynamic and static light scattering data

NASA Astrophysics Data System (ADS)

Delboni, L. F.; Iulek, J.; Burger, R.; da Silva, A. C. R.; Moreno, A.

2002-02-01

The expression, purification, crystallization, and characterization by X-ray diffraction of α-amylase are described here. Dynamic and static light scattering methods with a temperature controller was used to optimize the crystallization conditions of α-amylase from Bacillus stearothermophilus an important enzyme in many fields of industrial activity. After applying thermal gradients for growing crystals, X-ray cryo-crystallographic methods were employed for the data collection. Crystals grown by these thermal-gradients diffracted up to a maximum resolution of 3.8 Å, which allowed the determination of the unit cell constants as follows: a=61.7 Å, b=86.7 Å, c=92.2 Å and space group C222 (or C222 1).

Nested Conjugate Gradient Algorithm with Nested Preconditioning for Non-linear Image Restoration.

PubMed

Skariah, Deepak G; Arigovindan, Muthuvel

2017-06-19

We develop a novel optimization algorithm, which we call Nested Non-Linear Conjugate Gradient algorithm (NNCG), for image restoration based on quadratic data fitting and smooth non-quadratic regularization. The algorithm is constructed as a nesting of two conjugate gradient (CG) iterations. The outer iteration is constructed as a preconditioned non-linear CG algorithm; the preconditioning is performed by the inner CG iteration that is linear. The inner CG iteration, which performs preconditioning for outer CG iteration, itself is accelerated by an another FFT based non-iterative preconditioner. We prove that the method converges to a stationary point for both convex and non-convex regularization functionals. We demonstrate experimentally that proposed method outperforms the well-known majorization-minimization method used for convex regularization, and a non-convex inertial-proximal method for non-convex regularization functional.

Application of Conjugate Gradient methods to tidal simulation

USGS Publications Warehouse

Barragy, E.; Carey, G.F.; Walters, R.A.

1993-01-01

A harmonic decomposition technique is applied to the shallow water equations to yield a complex, nonsymmetric, nonlinear, Helmholtz type problem for the sea surface and an accompanying complex, nonlinear diagonal problem for the velocities. The equation for the sea surface is linearized using successive approximation and then discretized with linear, triangular finite elements. The study focuses on applying iterative methods to solve the resulting complex linear systems. The comparative evaluation includes both standard iterative methods for the real subsystems and complex versions of the well known Bi-Conjugate Gradient and Bi-Conjugate Gradient Squared methods. Several Incomplete LU type preconditioners are discussed, and the effects of node ordering, rejection strategy, domain geometry and Coriolis parameter (affecting asymmetry) are investigated. Implementation details for the complex case are discussed. Performance studies are presented and comparisons made with a frontal solver. ?? 1993.

Assessing the accuracy of using oscillating gradient spin echo sequences with AxCaliber to infer micron-sized axon diameters.

PubMed

Mercredi, Morgan; Vincent, Trevor J; Bidinosti, Christopher P; Martin, Melanie

2017-02-01

Current magnetic resonance imaging (MRI) axon diameter measurements rely on the pulsed gradient spin-echo sequence, which is unable to provide diffusion times short enough to measure small axon diameters. This study combines the AxCaliber axon diameter fitting method with data generated from Monte Carlo simulations of oscillating gradient spin-echo sequences (OGSE) to infer micron-sized axon diameters, in order to determine the feasibility of using MRI to infer smaller axon diameters in brain tissue. Monte Carlo computer simulation data were synthesized from tissue geometries of cylinders of different diameters using a range of gradient frequencies in the cosine OGSE sequence . Data were fitted to the AxCaliber method modified to allow the new pulse sequence. Intra- and extra-axonal water were studied separately and together. The simulations revealed the extra-axonal model to be problematic. Rather than change the model, we found that restricting the range of gradient frequencies such that the measured apparent diffusion coefficient was constant over that range resulted in more accurate fitted diameters. Thus a careful selection of frequency ranges is needed for the AxCaliber method to correctly model extra-axonal water, or adaptations to the method are needed. This restriction helped reduce the necessary gradient strengths for measurements that could be performed with parameters feasible for a Bruker BG6 gradient set. For these experiments, the simulations inferred diameters as small as 0.5 μm on square-packed and randomly packed cylinders. The accuracy of the inferred diameters was found to be dependent on the signal-to-noise ratio (SNR), with smaller diameters more affected by noise, although all diameter distributions were distinguishable from one another for all SNRs tested. The results of this study indicate the feasibility of using MRI with OGSE on preclinical scanners to infer small axon diameters.

Orthonormal vector general polynomials derived from the Cartesian gradient of the orthonormal Zernike-based polynomials.

PubMed

Mafusire, Cosmas; Krüger, Tjaart P J

2018-06-01

The concept of orthonormal vector circle polynomials is revisited by deriving a set from the Cartesian gradient of Zernike polynomials in a unit circle using a matrix-based approach. The heart of this model is a closed-form matrix equation of the gradient of Zernike circle polynomials expressed as a linear combination of lower-order Zernike circle polynomials related through a gradient matrix. This is a sparse matrix whose elements are two-dimensional standard basis transverse Euclidean vectors. Using the outer product form of the Cholesky decomposition, the gradient matrix is used to calculate a new matrix, which we used to express the Cartesian gradient of the Zernike circle polynomials as a linear combination of orthonormal vector circle polynomials. Since this new matrix is singular, the orthonormal vector polynomials are recovered by reducing the matrix to its row echelon form using the Gauss-Jordan elimination method. We extend the model to derive orthonormal vector general polynomials, which are orthonormal in a general pupil by performing a similarity transformation on the gradient matrix to give its equivalent in the general pupil. The outer form of the Gram-Schmidt procedure and the Gauss-Jordan elimination method are then applied to the general pupil to generate the orthonormal vector general polynomials from the gradient of the orthonormal Zernike-based polynomials. The performance of the model is demonstrated with a simulated wavefront in a square pupil inscribed in a unit circle.

SAGRAD: A Program for Neural Network Training with Simulated Annealing and the Conjugate Gradient Method

PubMed Central

Bernal, Javier; Torres-Jimenez, Jose

2015-01-01

SAGRAD (Simulated Annealing GRADient), a Fortran 77 program for computing neural networks for classification using batch learning, is discussed. Neural network training in SAGRAD is based on a combination of simulated annealing and Møller’s scaled conjugate gradient algorithm, the latter a variation of the traditional conjugate gradient method, better suited for the nonquadratic nature of neural networks. Different aspects of the implementation of the training process in SAGRAD are discussed, such as the efficient computation of gradients and multiplication of vectors by Hessian matrices that are required by Møller’s algorithm; the (re)initialization of weights with simulated annealing required to (re)start Møller’s algorithm the first time and each time thereafter that it shows insufficient progress in reaching a possibly local minimum; and the use of simulated annealing when Møller’s algorithm, after possibly making considerable progress, becomes stuck at a local minimum or flat area of weight space. Outlines of the scaled conjugate gradient algorithm, the simulated annealing procedure and the training process used in SAGRAD are presented together with results from running SAGRAD on two examples of training data. PMID:26958442

Effect of rain-shelter cultivation of Vitis vinifera cv. Cabernet Gernischet on the phenolic profile of berry skins and the incidence of grape diseases.

PubMed

Meng, Jiang-Fei; Ning, Peng-Fei; Xu, Teng-Fei; Zhang, Zhen-Wen

2012-12-27

Rain-shelter cultivation is an effective cultural method to prevent rainfall damage during grape harvest and widely applied in the Chinese rainy regions. In this study we investigated the effect of rain-shelter cultivation on grape diseases and phenolic composition in the skins of Vitis vinifera cv. Cabernet Gernischet grape berries through the comparison with open-field cultivation at two vintages (2010 and 2011). The results showed that rain-shelter cultivation reduced the incidence of grape diseases significantly and delayed the maturation of Cabernet Gernischet fruits. With regards to most of the phenolic compounds identified in this study, their content in grape samples under rain-shelter cultivation was decreased compared to those under open-field cultivation. However, rain-shelter cultivation stimulated the accumulation of dihydroquercetin-3-O-rhamnoside in grape skins during grape maturation. These were related with micrometeorological alterations in vineyards by using plastic covering under rain-shelter cultivation. It suggests the rain-shelter cultivation makes possible the cultivation of "Cabernet Gernischet" grapes in an organic production system, for providing a decrease in the incidence of diseases and the dependence on chemical pesticides in the grape and wine industry.

Is forest management a significant source of monoterpenes into the boreal atmosphere?

NASA Astrophysics Data System (ADS)

Haapanala, S.; Hakola, H.; Hellén, H.; Vestenius, M.; Levula, J.; Rinne, J.

2012-04-01

Volatile organic compounds (VOCs) including terpenoids are emitted into the atmosphere from various natural sources. Damaging the plant tissue is known to strongly increase their monoterpene release. We measured the terpenoid emissions caused by timber felling, i.e. those from stumps and logging residue. The emissions from stumps were studied using enclosures and those from the whole felling area using an ecosystem-scale micrometeorological method, disjunct eddy accumulation (DEA). The compounds analyzed were isoprene, monoterpenes and sesquiterpenes. Strong emissions of monoterpenes were measured from both the stumps and from the whole felling area. The emission rate decreased rapidly within a few months after the logging. In addition to fresh logging residue, the results suggest also other strong monoterpene sources may be present in the felling area. These could include pre-existing litter, increased microbial activity and remaining undergrowth. In order to evaluate the possible importance of monoterpenes emitted annually from cut Scots pine forests in Finland, we conducted a rough upscaling calculation. The resulting monoterpene release was approximated to be on the order of 15 kilotonnes per year, which corresponds to about one tenth of the monoterpene release from intact forests in Finland.

Energy budgets and resistances to energy transport in sparsely vegetated rangeland

USGS Publications Warehouse

Nichols, W.D.

1992-01-01

Partitioning available energy between plants and bare soil in sparsely vegetated rangelands will allow hydrologists and others to gain a greater understanding of water use by native vegetation, especially phreatophytes. Standard methods of conducting energy budget studies result in measurements of latent and sensible heat fluxes above the plant canopy which therefore include the energy fluxes from both the canopy and the soil. One-dimensional theoretical numerical models have been proposed recently for the partitioning of energy in sparse crops. Bowen ratio and other micrometeorological data collected over phreatophytes growing in areas of shallow ground water in central Nevada were used to evaluate the feasibility of using these models, which are based on surface and within-canopy aerodynamic resistances, to determine heat and water vapor transport in sparsely vegetated rangelands. The models appear to provide reasonably good estimates of sensible heat flux from the soil and latent heat flux from the canopy. Estimates of latent heat flux from the soil were less satisfactory. Sensible heat flux from the canopy was not well predicted by the present resistance formulations. Also, estimates of total above-canopy fluxes were not satisfactory when using a single value for above-canopy bulk aerodynamic resistance. ?? 1992.

[Turbulent characteristics in forest canopy under atmospheric neutral condition].

PubMed

Diao, Yi-Wei; Guan, De-Xin; Jin, Chang-Jie; Wang, An-Zhi; Pei, Tie-Fan

2010-02-01

Based on the micrometeorological data of broad-leaved Korean pine forest in Changbai Mountain in 2003, a second-order closure model was employed to calculate and analyze the turbulent characteristics within and above the canopy of the forest. The calculated mean wind profile was coincident with the measured one. The Reynolds stress within the forest was significantly attenuated. The turbulent strength, velocity flux, and skew were the largest at forest-atmosphere interface, as well the wind shear. With the increase of velocity skew, the turbulent intermittence became more significant, and the downward turbulent eddy within the canopy was limited. Most of the turbulent deeply within the forest canopy was produced by the non-local contributions above the canopy.

Correction of geometric distortion in Propeller echo planar imaging using a modified reversed gradient approach

PubMed Central

Chang, Hing-Chiu; Chuang, Tzu-Chao; Wang, Fu-Nien; Huang, Teng-Yi; Chung, Hsiao-Wen

2013-01-01

Objective This study investigates the application of a modified reversed gradient algorithm to the Propeller-EPI imaging method (periodically rotated overlapping parallel lines with enhanced reconstruction based on echo-planar imaging readout) for corrections of geometric distortions due to the EPI readout. Materials and methods Propeller-EPI acquisition was executed with 360-degree rotational coverage of the k-space, from which the image pairs with opposite phase-encoding gradient polarities were extracted for reversed gradient geometric and intensity corrections. The spatial displacements obtained on a pixel-by-pixel basis were fitted using a two-dimensional polynomial followed by low-pass filtering to assure correction reliability in low-signal regions. Single-shot EPI images were obtained on a phantom, whereas high spatial resolution T2-weighted and diffusion tensor Propeller-EPI data were acquired in vivo from healthy subjects at 3.0 Tesla, to demonstrate the effectiveness of the proposed algorithm. Results Phantom images show success of the smoothed displacement map concept in providing improvements of the geometric corrections at low-signal regions. Human brain images demonstrate prominently superior reconstruction quality of Propeller-EPI images with modified reversed gradient corrections as compared with those obtained without corrections, as evidenced from verification against the distortion-free fast spin-echo images at the same level. Conclusions The modified reversed gradient method is an effective approach to obtain high-resolution Propeller-EPI images with substantially reduced artifacts. PMID:23630654

Measurement and Analysis of the Temperature Gradient of Blackbody Cavities, for Use in Radiation Thermometry

NASA Astrophysics Data System (ADS)

De Lucas, Javier; Segovia, José Juan

2018-05-01

Blackbody cavities are the standard radiation sources widely used in the fields of radiometry and radiation thermometry. Its effective emissivity and uncertainty depend to a large extent on the temperature gradient. An experimental procedure based on the radiometric method for measuring the gradient is followed. Results are applied to particular blackbody configurations where gradients can be thermometrically estimated by contact thermometers and where the relationship between both basic methods can be established. The proposed procedure may be applied to commercial blackbodies if they are modified allowing secondary contact temperature measurement. In addition, the established systematic may be incorporated as part of the actions for quality assurance in routine calibrations of radiation thermometers, by using the secondary contact temperature measurement for detecting departures from the real radiometrically obtained gradient and the effect on the uncertainty. On the other hand, a theoretical model is proposed to evaluate the effect of temperature variations on effective emissivity and associated uncertainty. This model is based on a gradient sample chosen following plausible criteria. The model is consistent with the Monte Carlo method for calculating the uncertainty of effective emissivity and complements others published in the literature where uncertainty is calculated taking into account only geometrical variables and intrinsic emissivity. The mathematical model and experimental procedure are applied and validated using a commercial type three-zone furnace, with a blackbody cavity modified to enable a secondary contact temperature measurement, in the range between 400 °C and 1000 °C.

GBAS Ionospheric Anomaly Monitoring Based on a Two-Step Approach

PubMed Central

Zhao, Lin; Yang, Fuxin; Li, Liang; Ding, Jicheng; Zhao, Yuxin

2016-01-01

As one significant component of space environmental weather, the ionosphere has to be monitored using Global Positioning System (GPS) receivers for the Ground-Based Augmentation System (GBAS). This is because an ionospheric anomaly can pose a potential threat for GBAS to support safety-critical services. The traditional code-carrier divergence (CCD) methods, which have been widely used to detect the variants of the ionospheric gradient for GBAS, adopt a linear time-invariant low-pass filter to suppress the effect of high frequency noise on the detection of the ionospheric anomaly. However, there is a counterbalance between response time and estimation accuracy due to the fixed time constants. In order to release the limitation, a two-step approach (TSA) is proposed by integrating the cascaded linear time-invariant low-pass filters with the adaptive Kalman filter to detect the ionospheric gradient anomaly. The performance of the proposed method is tested by using simulated and real-world data, respectively. The simulation results show that the TSA can detect ionospheric gradient anomalies quickly, even when the noise is severer. Compared to the traditional CCD methods, the experiments from real-world GPS data indicate that the average estimation accuracy of the ionospheric gradient improves by more than 31.3%, and the average response time to the ionospheric gradient at a rate of 0.018 m/s improves by more than 59.3%, which demonstrates the ability of TSA to detect a small ionospheric gradient more rapidly. PMID:27240367

The effect of swim-up and gradient sperm preparation techniques on deoxyribonucleic acid (DNA) fragmentation in subfertile patients.

PubMed

Oguz, Yuksel; Guler, Ismail; Erdem, Ahmet; Mutlu, Mehmet Firat; Gumuslu, Seyhan; Oktem, Mesut; Bozkurt, Nuray; Erdem, Mehmet

2018-03-23

To compare the effect of two different sperm preparation techniques, including swim-up and gradient methods on sperm deoxyribonucleic acid (DNA) fragmentation status of semen samples from unexplained and mild male factor subfertile patients undergoing intrauterine insemination (IUI). A prospective randomized study was conducted in 65 subfertile patients, including 34 unexplained and 31 male factor infertility to compare basal and post-procedure DNA fragmentation rates in swim-up and gradient techniques. Sperm DNA fragmentation rates were evaluated by a sperm chromatin dispersion (SCD) test in two portions of each sample of semen that was prepared with either swim-up or gradient techniques. Sperm motility and morphology were also assessed based on WHO 2010 criteria. Swim-up but not gradient method yielded a statistically significant reduction in the DNA fragmented sperm rate after preparation as compared to basal rates, in the semen samples of both unexplained (41.85 ± 22.04 vs. 28.58 ± 21.93, p < 0.001 for swim-up; and 41.85 ± 22.04 vs. 38.79 ± 22.30, p = 0.160 for gradient) and mild male factor (46.61 ± 19.38 vs. 30.32 ± 18.20, p < 0.001 for swim-up and 46.61 ± 19.38 vs. 44.03 ± 20.87, p = 0.470 for gradient) subgroups. Swim-up method significantly reduces sperm DNA fragmentation rates and may have some prognostic value on intrauterine insemination in patients with decreased sperm DNA integrity.

Numerical optimization in Hilbert space using inexact function and gradient evaluations

NASA Technical Reports Server (NTRS)

Carter, Richard G.

1989-01-01

Trust region algorithms provide a robust iterative technique for solving non-convex unstrained optimization problems, but in many instances it is prohibitively expensive to compute high accuracy function and gradient values for the method. Of particular interest are inverse and parameter estimation problems, since function and gradient evaluations involve numerically solving large systems of differential equations. A global convergence theory is presented for trust region algorithms in which neither function nor gradient values are known exactly. The theory is formulated in a Hilbert space setting so that it can be applied to variational problems as well as the finite dimensional problems normally seen in trust region literature. The conditions concerning allowable error are remarkably relaxed: relative errors in the gradient error condition is automatically satisfied if the error is orthogonal to the gradient approximation. A technique for estimating gradient error and improving the approximation is also presented.

Localized, gradient-reversed ultrafast z-spectroscopy in vivo at 7T.

PubMed

Wilson, Neil E; D'Aquilla, Kevin; Debrosse, Catherine; Hariharan, Hari; Reddy, Ravinder

2016-10-01

To collect ultrafast z-spectra in vivo in situations where voxel homogeneity cannot be assured. Saturating in the presence of a gradient encodes the frequency offset spatially across a voxel. This encoding can be resolved by applying a similar gradient during readout. Acquiring additional scans with the gradient polarity reversed effectively mirrors the spatial locations of the frequency offsets so that the same physical location of a positive offset in the original scan will contribute a negative offset in the gradient-reversed scan. Gradient-reversed ultrafast z-spectroscopy (GRUFZS) was implemented and tested in a modified, localized PRESS sequence at 7T. Lysine phantoms were scanned at various concentrations and compared with coventionally-acquired z-spectra. Scans were acquired in vivo in human brain from homogeneous and inhomogeneous voxels with the ultrafast direction cycled between read, phase, and slice. Results were compared to those from a similar conventional z-spectroscopy PRESS-based sequence. Asymmetry spectra from GRUFZS are more consistent and reliable than those without gradient reversal and are comparable to those from conventional z-spectroscopy. GRUFZS offers significant acceleration in data acquisition compared to traditional chemical exchange saturation transfer methods with high spectral resolution and showed higher relative SNR effficiency. GRUFZS offers a method of collecting ultrafast z-spectra in voxels with the inhomogeneity often found in vivo. Magn Reson Med 76:1039-1046, 2016. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

Identifying Time Periods of Minimal Thermal Gradient for Temperature-Driven Structural Health Monitoring

PubMed Central

Reilly, John; Glisic, Branko

2018-01-01

Temperature changes play a large role in the day to day structural behavior of structures, but a smaller direct role in most contemporary Structural Health Monitoring (SHM) analyses. Temperature-Driven SHM will consider temperature as the principal driving force in SHM, relating a measurable input temperature to measurable output generalized strain (strain, curvature, etc.) and generalized displacement (deflection, rotation, etc.) to create three-dimensional signatures descriptive of the structural behavior. Identifying time periods of minimal thermal gradient provides the foundation for the formulation of the temperature–deformation–displacement model. Thermal gradients in a structure can cause curvature in multiple directions, as well as non-linear strain and stress distributions within the cross-sections, which significantly complicates data analysis and interpretation, distorts the signatures, and may lead to unreliable conclusions regarding structural behavior and condition. These adverse effects can be minimized if the signatures are evaluated at times when thermal gradients in the structure are minimal. This paper proposes two classes of methods based on the following two metrics: (i) the range of raw temperatures on the structure, and (ii) the distribution of the local thermal gradients, for identifying time periods of minimal thermal gradient on a structure with the ability to vary the tolerance of acceptable thermal gradients. The methods are tested and validated with data collected from the Streicker Bridge on campus at Princeton University. PMID:29494496

Optical ray tracing method for simulating beam-steering effects during laser diagnostics in turbulent media.

PubMed

Wang, Yejun; Kulatilaka, Waruna D

2017-04-10

In most coherent spectroscopic methods used in gas-phase laser diagnostics, multiple laser beams are focused and crossed at a specific location in space to form the probe region. The desired signal is then generated as a result of nonlinear interactions between the beams in this overlapped region. When such diagnostic schemes are implemented in practical devices having turbulent reacting flow fields with refractive index gradients, the resulting beam steering can give rise to large measurement uncertainties. The objective of this work is to simulate beam-steering effects arising from pressure and temperature gradients in gas-phase media using an optical ray tracing approach. The ZEMAX OpticStudio software package is used to simulate the beam crossing and uncrossing effects in the presence of pressure and temperature gradients, specifically the conditions present in high-pressure, high-temperature combustion devices such as gas turbine engines. Specific cases involving two-beam and three-beam crossing configurations are simulated. The model formulation, the effects of pressure and temperature gradients, and the resulting beam-steering effects are analyzed. The results show that thermal gradients in the range of 300-3000 K have minimal effects, while pressure gradients in the range of 1-50 atm result in pronounced beam steering and the resulting signal fluctuations in the geometries investigated. However, with increasing pressures, the temperature gradients can also have a pronounced effect on the resultant signal levels.

Steering of aggregating magnetic microparticles using propulsion gradients coils in an MRI Scanner.

PubMed

Mathieu, Jean-Baptiste; Martel, Sylvain

2010-05-01

Upgraded gradient coils can effectively enhance the MRI steering of magnetic microparticles in a branching channel. Applications of this method include MRI targeting of magnetic embolization agents for oncologic therapy. A magnetic suspension of Fe(3)O(4) magnetic particles was injected inside a y-shaped microfluidic channel. Magnetic gradients of 0, 50, 100, 200, and 400 mT/m were applied to the magnetic particles perpendicularly to the flow by a custom-built gradient coil inside a 1.5-T MRI scanner. Measurement of the steering ratio was performed both by video analyses and quantification of the mass of the particles collected at each outlet of the microfluidic channel, using atomic absorption spectroscopy. Magnetic particles steering ratios of 0.99 and 0.75 were reached with 400 mT/m gradient amplitude and measured by video analyses and atomic absorption spectroscopy, respectively. Experimental data shows that the steering ratio increases with higher magnetic gradients. Moreover, theory suggests that larger particles (or aggregates), higher magnetizations, and lower flows can also be used to improve the steering ratio. The technological limitation of the approach is that an MRI gradient amplitude increase to a few hundred milliteslas per meter is needed. A simple analytical method based on magnetophoretic velocity predictions and geometric considerations is proposed for steering ratio calculation. (c) 2010 Wiley-Liss, Inc.

Identifying Time Periods of Minimal Thermal Gradient for Temperature-Driven Structural Health Monitoring.

PubMed

Reilly, John; Glisic, Branko

2018-03-01

Temperature changes play a large role in the day to day structural behavior of structures, but a smaller direct role in most contemporary Structural Health Monitoring (SHM) analyses. Temperature-Driven SHM will consider temperature as the principal driving force in SHM, relating a measurable input temperature to measurable output generalized strain (strain, curvature, etc.) and generalized displacement (deflection, rotation, etc.) to create three-dimensional signatures descriptive of the structural behavior. Identifying time periods of minimal thermal gradient provides the foundation for the formulation of the temperature-deformation-displacement model. Thermal gradients in a structure can cause curvature in multiple directions, as well as non-linear strain and stress distributions within the cross-sections, which significantly complicates data analysis and interpretation, distorts the signatures, and may lead to unreliable conclusions regarding structural behavior and condition. These adverse effects can be minimized if the signatures are evaluated at times when thermal gradients in the structure are minimal. This paper proposes two classes of methods based on the following two metrics: (i) the range of raw temperatures on the structure, and (ii) the distribution of the local thermal gradients, for identifying time periods of minimal thermal gradient on a structure with the ability to vary the tolerance of acceptable thermal gradients. The methods are tested and validated with data collected from the Streicker Bridge on campus at Princeton University.

ILUBCG2-11: Solution of 11-banded nonsymmetric linear equation systems by a preconditioned biconjugate gradient routine

NASA Astrophysics Data System (ADS)

Chen, Y.-M.; Koniges, A. E.; Anderson, D. V.

1989-10-01

The biconjugate gradient method (BCG) provides an attractive alternative to the usual conjugate gradient algorithms for the solution of sparse systems of linear equations with nonsymmetric and indefinite matrix operators. A preconditioned algorithm is given, whose form resembles the incomplete L-U conjugate gradient scheme (ILUCG2) previously presented. Although the BCG scheme requires the storage of two additional vectors, it converges in a significantly lesser number of iterations (often half), while the number of calculations per iteration remains essentially the same.

Method and apparatus for fabrication of high gradient insulators with parallel surface conductors spaced less than one millimeter apart

DOEpatents

Sanders, David M.; Decker, Derek E.

1999-01-01

Optical patterns and lithographic techniques are used as part of a process to embed parallel and evenly spaced conductors in the non-planar surfaces of an insulator to produce high gradient insulators. The approach extends the size that high gradient insulating structures can be fabricated as well as improves the performance of those insulators by reducing the scale of the alternating parallel lines of insulator and conductor along the surface. This fabrication approach also substantially decreases the cost required to produce high gradient insulators.

Strong solutions and instability for the fitness gradient system in evolutionary games between two populations

NASA Astrophysics Data System (ADS)

Xu, Qiuju; Belmonte, Andrew; deForest, Russ; Liu, Chun; Tan, Zhong

2017-04-01

In this paper, we study a fitness gradient system for two populations interacting via a symmetric game. The population dynamics are governed by a conservation law, with a spatial migration flux determined by the fitness. By applying the Galerkin method, we establish the existence, regularity and uniqueness of global solutions to an approximate system, which retains most of the interesting mathematical properties of the original fitness gradient system. Furthermore, we show that a Turing instability occurs for equilibrium states of the fitness gradient system, and its approximations.

Segmentation of human face using gradient-based approach

NASA Astrophysics Data System (ADS)

Baskan, Selin; Bulut, M. Mete; Atalay, Volkan

2001-04-01

This paper describes a method for automatic segmentation of facial features such as eyebrows, eyes, nose, mouth and ears in color images. This work is an initial step for wide range of applications based on feature-based approaches, such as face recognition, lip-reading, gender estimation, facial expression analysis, etc. Human face can be characterized by its skin color and nearly elliptical shape. For this purpose, face detection is performed using color and shape information. Uniform illumination is assumed. No restrictions on glasses, make-up, beard, etc. are imposed. Facial features are extracted using the vertically and horizontally oriented gradient projections. The gradient of a minimum with respect to its neighbor maxima gives the boundaries of a facial feature. Each facial feature has a different horizontal characteristic. These characteristics are derived by extensive experimentation with many face images. Using fuzzy set theory, the similarity between the candidate and the feature characteristic under consideration is calculated. Gradient-based method is accompanied by the anthropometrical information, for robustness. Ear detection is performed using contour-based shape descriptors. This method detects the facial features and circumscribes each facial feature with the smallest rectangle possible. AR database is used for testing. The developed method is also suitable for real-time systems.

Super-resolution fusion of complementary panoramic images based on cross-selection kernel regression interpolation.

PubMed

Chen, Lidong; Basu, Anup; Zhang, Maojun; Wang, Wei; Liu, Yu

2014-03-20

A complementary catadioptric imaging technique was proposed to solve the problem of low and nonuniform resolution in omnidirectional imaging. To enhance this research, our paper focuses on how to generate a high-resolution panoramic image from the captured omnidirectional image. To avoid the interference between the inner and outer images while fusing the two complementary views, a cross-selection kernel regression method is proposed. First, in view of the complementarity of sampling resolution in the tangential and radial directions between the inner and the outer images, respectively, the horizontal gradients in the expected panoramic image are estimated based on the scattered neighboring pixels mapped from the outer, while the vertical gradients are estimated using the inner image. Then, the size and shape of the regression kernel are adaptively steered based on the local gradients. Furthermore, the neighboring pixels in the next interpolation step of kernel regression are also selected based on the comparison between the horizontal and vertical gradients. In simulation and real-image experiments, the proposed method outperforms existing kernel regression methods and our previous wavelet-based fusion method in terms of both visual quality and objective evaluation.

Diverse expected gradient active learning for relative attributes.

PubMed

You, Xinge; Wang, Ruxin; Tao, Dacheng

2014-07-01

The use of relative attributes for semantic understanding of images and videos is a promising way to improve communication between humans and machines. However, it is extremely labor- and time-consuming to define multiple attributes for each instance in large amount of data. One option is to incorporate active learning, so that the informative samples can be actively discovered and then labeled. However, most existing active-learning methods select samples one at a time (serial mode), and may therefore lose efficiency when learning multiple attributes. In this paper, we propose a batch-mode active-learning method, called diverse expected gradient active learning. This method integrates an informativeness analysis and a diversity analysis to form a diverse batch of queries. Specifically, the informativeness analysis employs the expected pairwise gradient length as a measure of informativeness, while the diversity analysis forces a constraint on the proposed diverse gradient angle. Since simultaneous optimization of these two parts is intractable, we utilize a two-step procedure to obtain the diverse batch of queries. A heuristic method is also introduced to suppress imbalanced multiclass distributions. Empirical evaluations of three different databases demonstrate the effectiveness and efficiency of the proposed approach.

Diverse Expected Gradient Active Learning for Relative Attributes.

PubMed

You, Xinge; Wang, Ruxin; Tao, Dacheng

2014-06-02

The use of relative attributes for semantic understanding of images and videos is a promising way to improve communication between humans and machines. However, it is extremely labor- and time-consuming to define multiple attributes for each instance in large amount of data. One option is to incorporate active learning, so that the informative samples can be actively discovered and then labeled. However, most existing active-learning methods select samples one at a time (serial mode), and may therefore lose efficiency when learning multiple attributes. In this paper, we propose a batch-mode active-learning method, called Diverse Expected Gradient Active Learning (DEGAL). This method integrates an informativeness analysis and a diversity analysis to form a diverse batch of queries. Specifically, the informativeness analysis employs the expected pairwise gradient length as a measure of informativeness, while the diversity analysis forces a constraint on the proposed diverse gradient angle. Since simultaneous optimization of these two parts is intractable, we utilize a two-step procedure to obtain the diverse batch of queries. A heuristic method is also introduced to suppress imbalanced multi-class distributions. Empirical evaluations of three different databases demonstrate the effectiveness and efficiency of the proposed approach.

Performance of Nonlinear Finite-Difference Poisson-Boltzmann Solvers

PubMed Central

Cai, Qin; Hsieh, Meng-Juei; Wang, Jun; Luo, Ray

2014-01-01

We implemented and optimized seven finite-difference solvers for the full nonlinear Poisson-Boltzmann equation in biomolecular applications, including four relaxation methods, one conjugate gradient method, and two inexact Newton methods. The performance of the seven solvers was extensively evaluated with a large number of nucleic acids and proteins. Worth noting is the inexact Newton method in our analysis. We investigated the role of linear solvers in its performance by incorporating the incomplete Cholesky conjugate gradient and the geometric multigrid into its inner linear loop. We tailored and optimized both linear solvers for faster convergence rate. In addition, we explored strategies to optimize the successive over-relaxation method to reduce its convergence failures without too much sacrifice in its convergence rate. Specifically we attempted to adaptively change the relaxation parameter and to utilize the damping strategy from the inexact Newton method to improve the successive over-relaxation method. Our analysis shows that the nonlinear methods accompanied with a functional-assisted strategy, such as the conjugate gradient method and the inexact Newton method, can guarantee convergence in the tested molecules. Especially the inexact Newton method exhibits impressive performance when it is combined with highly efficient linear solvers that are tailored for its special requirement. PMID:24723843

Limited-memory fast gradient descent method for graph regularized nonnegative matrix factorization.

PubMed

Guan, Naiyang; Wei, Lei; Luo, Zhigang; Tao, Dacheng

2013-01-01

Graph regularized nonnegative matrix factorization (GNMF) decomposes a nonnegative data matrix X[Symbol:see text]R(m x n) to the product of two lower-rank nonnegative factor matrices, i.e.,W[Symbol:see text]R(m x r) and H[Symbol:see text]R(r x n) (r < min {m,n}) and aims to preserve the local geometric structure of the dataset by minimizing squared Euclidean distance or Kullback-Leibler (KL) divergence between X and WH. The multiplicative update rule (MUR) is usually applied to optimize GNMF, but it suffers from the drawback of slow-convergence because it intrinsically advances one step along the rescaled negative gradient direction with a non-optimal step size. Recently, a multiple step-sizes fast gradient descent (MFGD) method has been proposed for optimizing NMF which accelerates MUR by searching the optimal step-size along the rescaled negative gradient direction with Newton's method. However, the computational cost of MFGD is high because 1) the high-dimensional Hessian matrix is dense and costs too much memory; and 2) the Hessian inverse operator and its multiplication with gradient cost too much time. To overcome these deficiencies of MFGD, we propose an efficient limited-memory FGD (L-FGD) method for optimizing GNMF. In particular, we apply the limited-memory BFGS (L-BFGS) method to directly approximate the multiplication of the inverse Hessian and the gradient for searching the optimal step size in MFGD. The preliminary results on real-world datasets show that L-FGD is more efficient than both MFGD and MUR. To evaluate the effectiveness of L-FGD, we validate its clustering performance for optimizing KL-divergence based GNMF on two popular face image datasets including ORL and PIE and two text corpora including Reuters and TDT2. The experimental results confirm the effectiveness of L-FGD by comparing it with the representative GNMF solvers.

Unraveling Deformation Mechanisms in Gradient Structured Metals

NASA Astrophysics Data System (ADS)

Moering, Jordan Alexander

Gradient structures have demonstrated high strength and high ductility, introducing new mechanisms to challenge conventional mechanics. This work develops a method for characterizing the shear strain in gradient structured steel and presents evidence of a texture gradient that develops in Surface Mechanical Attrition Treatment (SMAT). Mechanics underlying some theories of the strengthening mechanisms in gradient structured metals are introduced, followed by the fabrication and testing of gradient structured aluminum rod. The round geometry is intrinsically different from its flat counterparts, which leads to a multiaxial stress state evolving in tension. The aluminum exhibits strengthening beyond rule of mixtures, and texture evolution in the post-mortem sample indicates that out of plane stresses operate within the gradient. Finally, another gradient structured aluminum rod is shown to exhibit higher strength and higher elongation to failure in a variety of sample diameters and processing conditions. The GND density and microstructural evolution showed no significant changes during mechanical testing, and high resolution strain mapping was successfully completed within the core of the material. These discoveries and contributions to the field should help continue unraveling the deformation mechanisms of gradient structured metals.

Determining Object Orientation from a Single Image Using Multiple Information Sources.

DTIC Science & Technology

1984-06-01

object surface. Location of the image ellipse is accomplished by exploiting knowledge about object boundaries and image intensity gradients . -. The...Using Intensity Gradient Information for Ellipse fitting ........ .51 4.3.7 Orientation From Ellipses .............................. 53 4.3.8 Application...object boundaries and image intensity gradients . The orientation information from each of these three methods is combined using a "plausibility" function

Domain Derivatives in Dielectric Rough Surface Scattering

DTIC Science & Technology

2015-01-01

and require the gradient of the objective function in the unknown model parameter vector at each stage of iteration. For large N, finite...differencing becomes numerically intensive, and an efficient alternative is domain differentiation in which the full gradient is obtained by solving a single...derivative calculation of the gradient for a locally perturbed dielectric interface. The method is non-variational, and algebraic in nature in that it

Visualizing Cytoplasmic Calcium in Polarizing Zygotes and Growing Rhizoids of Fucus Serratus.

PubMed

Brownlee, Colin

1989-04-01

Evidence for spatial variations in cytoplasmic free Ca 2+ in tip-growing cells is briefly summarized. Methods are described for detecting such gradients using fura-2 with dual wavelength excitation fluorescence microscopy. Results so far indicate that gradients of Ca 2+ are present in growing rhizoid cells but physiologically significant gradients have not yet been detected in the early stages of polarization.

Dose gradient curve: A new tool for evaluating dose gradient

PubMed Central

Choi, Young Eun

2018-01-01

Purpose Stereotactic radiotherapy, which delivers an ablative high radiation dose to a target volume for maximum local tumor control, requires a rapid dose fall-off outside the target volume to prevent extensive damage to nearby normal tissue. Currently, there is no tool to comprehensively evaluate the dose gradient near the target volume. We propose the dose gradient curve (DGC) as a new tool to evaluate the quality of a treatment plan with respect to the dose fall-off characteristics. Methods The average distance between two isodose surfaces was represented by the dose gradient index (DGI) estimated by a simple equation using the volume and surface area of isodose levels. The surface area was calculated by mesh generation and surface triangulation. The DGC was defined as a plot of the DGI of each dose interval as a function of the dose. Two types of DGCs, differential and cumulative, were generated. The performance of the DGC was evaluated using stereotactic radiosurgery plans for virtual targets. Results Over the range of dose distributions, the dose gradient of each dose interval was well-characterized by the DGC in an easily understandable graph format. Significant changes in the DGC were observed reflecting the differences in planning situations and various prescription doses. Conclusions The DGC is a rational method for visualizing the dose gradient as the average distance between two isodose surfaces; the shorter the distance, the steeper the dose gradient. By combining the DGC with the dose-volume histogram (DVH) in a single plot, the DGC can be utilized to evaluate not only the dose gradient but also the target coverage in routine clinical practice. PMID:29698471

Influence of natural temperature gradients on measurements of xylem sap flow with thermal dissipation probes. 1. Field observations and possible remedies.

PubMed

Do, F; Rocheteau, A

2002-06-01

The thermal dissipation method is simple and widely used for measuring sap flow in large stems. As with several other thermal methods, natural temperature gradients are assumed to be negligible in the sapwood being measured. We studied the magnitude and variability of natural temperature gradients in sapwood of Acacia trees growing in the Sahelian zone of Senegal, analyzed their effects on sap flow measurements, and investigated possible solutions. A new measurement approach employing cyclic heating (45 minutes of heating and 15 minutes of cooling; 45/15) was also tested. Three-day measurement sequences that included 1 day without heating, a second day with continuous heating and a third day with cyclic heating were recorded during a 6.5-month period using probes installed at three azimuths in a tree trunk. Natural temperature gradients between the two probes of the sensor unit, spaced 8 to 10 cm vertically, were rarely negligible (i.e., < 0.2 degrees C): they were positive during the night and negative during the day, with an amplitude ranging from 0.3 to 3.5 degrees C depending on trunk azimuth, day and season. These temperature gradients had a direct influence on the signal from the continuously heated sensors, inducing fluctuations in the nighttime reference signal. The resulting errors in sap flow estimates can be greater than 100%. Correction protocols have been proposed in previous studies, but they were unsuitable because of the high spatial and temporal variability of the natural temperature gradients. We found that a measurement signal derived from a noncontinuous heating system could be an attractive solution because it appears to be independent of natural temperature gradients. The magnitude and variability of temperature gradients that we observed were likely exacerbated by the combination of open stand, high solar radiation and low sap flow rate. However, for all applications of the thermal dissipation method, it is wise to check regularly for natural temperature gradients by switching off the heater.

Thermal Analysis of Reinforced Concrete Tank for Conditioning Wood by FEM Method

NASA Astrophysics Data System (ADS)

Błaszczyński, Tomasz; Babiak, Michał; Wielentejczyk, Przemysław

2017-10-01

The article introduces the analysis of a RC tank for conditioning wood carried out using the FEM (Finite Element Method). A temperature gradient distribution increase resulting from the influence of hot liquid filling the tank was defined. Values of gradients in border sections of the tank walls and the bottom were defined on the basis of the isotherm method. The obtained results were compared with empirical formulas from literature. Strength analyses were also carried out. Additionally, the problematic aspects of elongated monolithic tanks for liquids were introduced, especially regarding large temperature gradients and the means of necessary technical solutions. The use of the FEM method for designing engineering objects is, nowadays, an irreplaceable solution. In the case of the discussed tank, a spatial model of the construction mapping its actual performance was constructed in order to correctly estimate the necessary dimensions of wall and bottom sections, as well as reinforcement.

Methods, systems and devices for detecting and locating ferromagnetic objects

DOEpatents

Roybal, Lyle Gene [Idaho Falls, ID; Kotter, Dale Kent [Shelley, ID; Rohrbaugh, David Thomas [Idaho Falls, ID; Spencer, David Frazer [Idaho Falls, ID

2010-01-26

Methods for detecting and locating ferromagnetic objects in a security screening system. One method includes a step of acquiring magnetic data that includes magnetic field gradients detected during a period of time. Another step includes representing the magnetic data as a function of the period of time. Another step includes converting the magnetic data to being represented as a function of frequency. Another method includes a step of sensing a magnetic field for a period of time. Another step includes detecting a gradient within the magnetic field during the period of time. Another step includes identifying a peak value of the gradient detected during the period of time. Another step includes identifying a portion of time within the period of time that represents when the peak value occurs. Another step includes configuring the portion of time over the period of time to represent a ratio.

Ultrasound image edge detection based on a novel multiplicative gradient and Canny operator.

PubMed

Zheng, Yinfei; Zhou, Yali; Zhou, Hao; Gong, Xiaohong

2015-07-01

To achieve the fast and accurate segmentation of ultrasound image, a novel edge detection method for speckle noised ultrasound images was proposed, which was based on the traditional Canny and a novel multiplicative gradient operator. The proposed technique combines a new multiplicative gradient operator of non-Newtonian type with the traditional Canny operator to generate the initial edge map, which is subsequently optimized by the following edge tracing step. To verify the proposed method, we compared it with several other edge detection methods that had good robustness to noise, with experiments on the simulated and in vivo medical ultrasound image. Experimental results showed that the proposed algorithm has higher speed for real-time processing, and the edge detection accuracy could be 75% or more. Thus, the proposed method is very suitable for fast and accurate edge detection of medical ultrasound images. © The Author(s) 2014.

The lowest-order weak Galerkin finite element method for the Darcy equation on quadrilateral and hybrid meshes

NASA Astrophysics Data System (ADS)

Liu, Jiangguo; Tavener, Simon; Wang, Zhuoran

2018-04-01

This paper investigates the lowest-order weak Galerkin finite element method for solving the Darcy equation on quadrilateral and hybrid meshes consisting of quadrilaterals and triangles. In this approach, the pressure is approximated by constants in element interiors and on edges. The discrete weak gradients of these constant basis functions are specified in local Raviart-Thomas spaces, specifically RT0 for triangles and unmapped RT[0] for quadrilaterals. These discrete weak gradients are used to approximate the classical gradient when solving the Darcy equation. The method produces continuous normal fluxes and is locally mass-conservative, regardless of mesh quality, and has optimal order convergence in pressure, velocity, and normal flux, when the quadrilaterals are asymptotically parallelograms. Implementation is straightforward and results in symmetric positive-definite discrete linear systems. We present numerical experiments and comparisons with other existing methods.

Conjugate gradient minimisation approach to generating holographic traps for ultracold atoms.

PubMed

Harte, Tiffany; Bruce, Graham D; Keeling, Jonathan; Cassettari, Donatella

2014-11-03

Direct minimisation of a cost function can in principle provide a versatile and highly controllable route to computational hologram generation. Here we show that the careful design of cost functions, combined with numerically efficient conjugate gradient minimisation, establishes a practical method for the generation of holograms for a wide range of target light distributions. This results in a guided optimisation process, with a crucial advantage illustrated by the ability to circumvent optical vortex formation during hologram calculation. We demonstrate the implementation of the conjugate gradient method for both discrete and continuous intensity distributions and discuss its applicability to optical trapping of ultracold atoms.

Acoustic characteristics of the medium with gradient change of impedance

NASA Astrophysics Data System (ADS)

Hu, Bo; Yang, Desen; Sun, Yu; Shi, Jie; Shi, Shengguo; Zhang, Haoyang

2015-10-01

The medium with gradient change of acoustic impedance is a new acoustic structure which developed from multiple layer structures. In this paper, the inclusion is introduced and a new set of equations is developed. It can obtain better acoustic properties based on the medium with gradient change of acoustic impedance. Theoretical formulation has been systematically addressed which demonstrates how the idea of utilizing this method. The sound reflection and absorption coefficients were obtained. At last, the validity and the correctness of this method are assessed by simulations. The results show that appropriate design of parameters of the medium can improve underwater acoustic properties.

Communication: Extended multi-state complete active space second-order perturbation theory: Energy and nuclear gradients

NASA Astrophysics Data System (ADS)

Shiozaki, Toru; Győrffy, Werner; Celani, Paolo; Werner, Hans-Joachim

2011-08-01

The extended multireference quasi-degenerate perturbation theory, proposed by Granovsky [J. Chem. Phys. 134, 214113 (2011)], is combined with internally contracted multi-state complete active space second-order perturbation theory (XMS-CASPT2). The first-order wavefunction is expanded in terms of the union of internally contracted basis functions generated from all the reference functions, which guarantees invariance of the theory with respect to unitary rotations of the reference functions. The method yields improved potentials in the vicinity of avoided crossings and conical intersections. The theory for computing nuclear energy gradients for MS-CASPT2 and XMS-CASPT2 is also presented and the first implementation of these gradient methods is reported. A number of illustrative applications of the new methods are presented.

Nanofiber scaffold gradients for interfacial tissue engineering.

PubMed

Ramalingam, Murugan; Young, Marian F; Thomas, Vinoy; Sun, Limin; Chow, Laurence C; Tison, Christopher K; Chatterjee, Kaushik; Miles, William C; Simon, Carl G

2013-02-01

We have designed a 2-spinnerette device that can directly electrospin nanofiber scaffolds containing a gradient in composition that can be used to engineer interfacial tissues such as ligament and tendon. Two types of nanofibers are simultaneously electrospun in an overlapping pattern to create a nonwoven mat of nanofibers containing a composition gradient. The approach is an advance over previous methods due to its versatility - gradients can be formed from any materials that can be electrospun. A dye was used to characterize the 2-spinnerette approach and applicability to tissue engineering was demonstrated by fabricating nanofibers with gradients in amorphous calcium phosphate nanoparticles (nACP). Adhesion and proliferation of osteogenic cells (MC3T3-E1 murine pre-osteoblasts) on gradients was enhanced on the regions of the gradients that contained higher nACP content yielding a graded osteoblast response. Since increases in soluble calcium and phosphate ions stimulate osteoblast function, we measured their release and observed significant release from nanofibers containing nACP. The nanofiber-nACP gradients fabricated herein can be applied to generate tissues with osteoblast gradients such as ligaments or tendons. In conclusion, these results introduce a versatile approach for fabricating nanofiber gradients that can have application for engineering graded tissues.

New hybrid conjugate gradient methods with the generalized Wolfe line search.

PubMed

Xu, Xiao; Kong, Fan-Yu

2016-01-01

The conjugate gradient method was an efficient technique for solving the unconstrained optimization problem. In this paper, we made a linear combination with parameters β k of the DY method and the HS method, and putted forward the hybrid method of DY and HS. We also proposed the hybrid of FR and PRP by the same mean. Additionally, to present the two hybrid methods, we promoted the Wolfe line search respectively to compute the step size α k of the two hybrid methods. With the new Wolfe line search, the two hybrid methods had descent property and global convergence property of the two hybrid methods that can also be proved.

Estimation of the depth to the fresh-water/salt-water interface from vertical head gradients in wells in coastal and island aquifers

NASA Astrophysics Data System (ADS)

Izuka, Scot K.; Gingerich, Stephen B.

An accurate estimate of the depth to the theoretical interface between fresh, water and salt water is critical to estimates of well yields in coastal and island aquifers. The Ghyben-Herzberg relation, which is commonly used to estimate interface depth, can greatly underestimate or overestimate the fresh-water thickness, because it assumes no vertical head gradients and no vertical flow. Estimation of the interface depth needs to consider the vertical head gradients and aquifer anisotropy that may be present. This paper presents a method to calculate vertical head gradients using water-level measurements made during drilling of a partially penetrating well; the gradient is then used to estimate interface depth. Application of the method to a numerically simulated fresh-water/salt-water system shows that the method is most accurate when the gradient is measured in a deeply penetrating well. Even using a shallow well, the method more accurately estimates the interface position than does the Ghyben-Herzberg relation where substantial vertical head gradients exist. Application of the method to field data shows that drilling, collection methods of water-level data, and aquifer inhomogeneities can cause difficulties, but the effects of these difficulties can be minimized. Résumé Une estimation précise de la profondeur de l'interface théorique entre l'eau douce et l'eau salée est un élément critique dans les estimations de rendement des puits dans les aquifères insulaires et littoraux. La relation de Ghyben-Herzberg, qui est habituellement utilisée pour estimer la profondeur de cette interface, peut fortement sous-estimer ou surestimer l'épaisseur de l'eau douce, parce qu'elle suppose l'absence de gradient vertical de charge et d'écoulement vertical. L'estimation de la profondeur de l'interface requiert de prendre en considération les gradients verticaux de charge et l'éventuelle anisotropie de l'aquifère. Cet article propose une méthode de calcul des gradients verticaux de charge à partir des mesures de niveau piézométrique faites en cours de foration d'un puits incomplet; le gradient est alors utilisé pour estimer la profondeur de l'interface. L'application de cette méthode à un système eau douce - eau salée simulé numériquement montre que la méthode est la plus précise lorsque le gradient est mesuré dans un puits pénétrant profondément dans l'aquifère. Même en utilisant un puits peu profond, la méthode estime la position de l'interface avec plus de précision que ne le fait la relation de Ghyben-Herzberg lorsqu'il existe un gradient vertical de charge bien marqué. L'application de la méthode à des données de terrain montre que la foration, les méthodes de mesure de niveau et les hétérogénéités au sein de l'aquifère peuvent être la cause de difficultés, mais que les effets de ces difficultés peuvent être réduits. Resumen Para la estimación de la productividad de pozos en acuíferos costeros y en islas es necesaria una estimación precisa de la profundidad de la interfaz teórica entre agua dulce y agua salada. La relación de Ghyben-Herzberg, usada habitualmente para estimar la profundidad de la interfaz, puede subestimar o sobrestimar el espesor de agua dulce, al asumir la ausencia de flujos y gradientes verticales. La estimación de la profundidad de la interfaz debe considerar tanto estos gradientes verticales, como la posible anisotropía del acuífero. En este artículo se presenta un método para calcular los gradientes verticales de niveles a partir de las medidas obtenidas durante la perforación de un pozo parcialmente penetrante para, a partir de este gradiente, estimar la profundidad de la interfaz. La aplicación del método a un sistema de agua dulce/agua salada simulado numéricamente muestra que el método es más preciso cuando el gradiente se mide en un pozo profundo. Incluso en el caso de un pozo superficial, el método permite una estimación más precisa de la profundidad de la interfaz que la aplicación de la fórmula de Ghyben-Herzberg, en los casos en los que existen gradientes verticales significativos. La aplicación del método a datos reales muestra que la perforación, la recogida de datos de niveles y la heterogeneidad en el acuífero pueden causar dificultades en la aplicación del método, pero que estas pueden minimizarse.

Combinational concentration gradient confinement through stagnation flow.

PubMed

Alicia, Toh G G; Yang, Chun; Wang, Zhiping; Nguyen, Nam-Trung

2016-01-21

Concentration gradient generation in microfluidics is typically constrained by two conflicting mass transport requirements: short characteristic times (τ) for precise temporal control of concentration gradients but at the expense of high flow rates and hence, high flow shear stresses (σ). To decouple the limitations from these parameters, here we propose the use of stagnation flows to confine concentration gradients within large velocity gradients that surround the stagnation point. We developed a modified cross-slot (MCS) device capable of feeding binary and combinational concentration sources in stagnation flows. We show that across the velocity well, source-sink pairs can form permanent concentration gradients. As source-sink concentration pairs are continuously supplied to the MCS, a permanently stable concentration gradient can be generated. Tuning the flow rates directly controls the velocity gradients, and hence the stagnation point location, allowing the confined concentration gradient to be focused. In addition, the flow rate ratio within the MCS rapidly controls (τ ∼ 50 ms) the location of the stagnation point and the confined combinational concentration gradients at low flow shear (0.2 Pa < σ < 2.9 Pa). The MCS device described in this study establishes the method for using stagnation flows to rapidly generate and position low shear combinational concentration gradients for shear sensitive biological assays.