Diversity and Spatial Distribution of Hydrazine Oxidoreductase (hzo) Gene in the Oxygen Minimum Zone Off Costa Rica

PubMed Central

Kong, Liangliang; Jing, Hongmei; Kataoka, Takafumi; Buchwald, Carolyn; Liu, Hongbin

2013-01-01

Anaerobic ammonia oxidation (anammox) as an important nitrogen loss pathway has been reported in marine oxygen minimum zones (OMZs), but the community composition and spatial distribution of anammox bacteria in the eastern tropical North Pacific (ETNP) OMZ are poorly determined. In this study, anammox bacterial communities in the OMZ off Costa Rica (CRD-OMZ) were analyzed based on both hydrazine oxidoreductase (hzo) genes and their transcripts assigned to cluster 1 and 2. The anammox communities revealed by hzo genes and proteins in CRD-OMZ showed a low diversity. Gene quantification results showed that hzo gene abundances peaked in the upper OMZs, associated with the peaks of nitrite concentration. Nitrite and oxygen concentrations may therefore colimit the distribution of anammox bacteria in this area. Furthermore, transcriptional activity of anammox bacteria was confirmed by obtaining abundant hzo mRNA transcripts through qRT-PCR. A novel hzo cluster 2x clade was identified by the phylogenetic analysis and these novel sequences were abundant and widely distributed in this environment. Our study demonstrated that both cluster 1 and 2 anammox bacteria play an active role in the CRD-OMZ, and the cluster 1 abundance and transcriptional activity were higher than cluster 2 in both free-living and particle-attached fractions at both gene and transcriptional levels. PMID:24205176

Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific.

PubMed

Stevens, Heike; Ulloa, Osvaldo

2008-05-01

The structure and diversity of bacterial communities associated with the oxygen minimum zone (OMZ) of the eastern tropical South Pacific was studied through phylogenetic analysis. Clone libraries of 16S rRNA gene fragments were constructed using environmental DNA collected from the OMZ (60 m and 200 m), the sea surface (10 m), and the deep oxycline (450 m). At the class level, the majority of sequences affiliated to the gamma- (53.7%) and alpha-Proteobacteria (19.7%), and to the Bacteroidetes (11.2%). A vertical partitioning of the bacterial communities was observed, with main differences between the suboxic OMZ and the more oxygenated surface and deep oxycline waters. At the surface, the microbial community was predominantly characterized by SAR86, Loktanella and unclassified Flavobacteriaceae, whereas the deeper layer was dominated by Sulfitobacter and unclassified Alteromonadaceae. In the OMZ, major constituents affiliated to the marine SAR11 clade and to thiotrophic gamma-symbionts (25% of all sequences), a group not commonly found in pelagic waters. Sequences affiliating to the phylum Chloroflexi, to the AGG47 and SAR202 clades, to the delta-Proteobacteria, to the Acidobacteria, and to the 'anammox group' of the Planctomycetes were found exclusively in the OMZ. The bacterial richness in the OMZ was higher than in the oxic surface and deeper oxycline, as revealed by rarefaction analysis and the Chao1 richness estimator (surface: 45 +/- 8, deeper oxycline: 76 +/- 26; OMZ (60 m): 97 +/- 33, OMZ (200 m): 109 +/- 31). OMZ bacterial diversity indices (Fisher's: approximately 30 +/- 5, Shannon's: approximately 3.31, inverse Simpson's: approximately 20) were similar to those found in other pelagic marine environments. Thus, our results indicate a distinct and diverse bacterial community within the OMZ, with presumably novel and yet uncultivated bacterial lineages.

Critical oxygen levels and metabolic suppression in oceanic oxygen minimum zones.

PubMed

Seibel, Brad A

2011-01-15

The survival of oceanic organisms in oxygen minimum zones (OMZs) depends on their total oxygen demand and the capacities for oxygen extraction and transport, anaerobic ATP production and metabolic suppression. Anaerobic metabolism and metabolic suppression are required for daytime forays into the most extreme OMZs. Critical oxygen partial pressures are, within a range, evolved to match the minimum oxygen level to which a species is exposed. This fact demands that low oxygen habitats be defined by the biological response to low oxygen rather than by some arbitrary oxygen concentration. A broad comparative analysis of oxygen tolerance facilitates the identification of two oxygen thresholds that may prove useful for policy makers as OMZs expand due to climate change. Between these thresholds, specific physiological adaptations to low oxygen are required of virtually all species. The lower threshold represents a limit to evolved oxygen extraction capacity. Climate change that pushes oxygen concentrations below the lower threshold (~0.8 kPa) will certainly result in a transition from an ecosystem dominated by a diverse midwater fauna to one dominated by diel migrant biota that must return to surface waters at night. Animal physiology and, in particular, the response of animals to expanding hypoxia, is a critical, but understudied, component of biogeochemical cycles and oceanic ecology. Here, I discuss the definition of hypoxia and critical oxygen levels, review adaptations of animals to OMZs and discuss the capacity for, and prevalence of, metabolic suppression as a response to temporary residence in OMZs and the possible consequences of climate change on OMZ ecology.

NC10 Bacteria in a Marine Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Padilla, C. C.; Bristow, L. A.; Benson, C. R.; Sarode, N. D.; Girguis, P. R.; Glass, J. B.; DiChristina, T. J.; Thamdrup, B.; Stewart, F. J.

2014-12-01

Marine oxygen minimum zones (OMZs) are key regions of nitrogen cycling and nitrogen loss as N2. The potential for methane cycling to influence OMZ nitrogen budgets remains largely unknown. The anaerobic oxidation of methane (AOM) coupled to nitrite or nitrate reduction has been shown to be a potential source of methane consumption, N loss, and oxygen production in freshwater sediments, but has not been described for marine pelagic environments. Nitrite-dependent AOM is performed by bacteria of the candidate division NC10 through an intra-aerobic pathway involving the dismutation of nitric oxide to O2 and N2. We explored the potential that NC10-like bacteria are present and active in the anoxic, nitrite-rich OMZ of the Eastern Tropical North Pacific. Community transcriptome sequencing confirmed the expression of genes with top matches to the NC10 bacterium 'Candidatus Methylomirabilis oxyfera.' NC10-like transcripts increased in relative abundance with depth into the anoxic OMZ core and included genes of aerobic methanotrophy and denitrification, as well as high numbers of transcripts matching norZ nitric oxide reductase, hypothesized to play a role in the O2-yielding dismutation reaction. Phylogenetic analysis of OMZ particulate methane monooxygenase (pmoA) and 16S rRNA gene sequences recovered by PCR revealed multiple clades of NC10 phylotypes in the OMZ. Preliminary data from OMZ enrichments revealed methane-dependent nitrite consumption, but further characterization is required to identify the pathways and organisms mediating this process. These findings expand the known environmental range of NC10 and suggest the possibility of previously uncharacterized linkages between OMZ nitrogen and methane cycles.

Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone.

PubMed

Bryant, Jessica A; Stewart, Frank J; Eppley, John M; DeLong, Edward F

2012-07-01

Oxygen minimum zones (OMZs) are natural physical features of the world's oceans. They create steep physiochemical gradients in the water column, which most notably include a dramatic draw down in oxygen concentrations over small vertical distances (<100 m). Microbial communities within OMZs play central roles in ocean and global biogeochemical cycles, yet we still lack a fundamental understanding of how microbial biodiversity is distributed across OMZs. Here, we used metagenomic sequencing to investigate microbial diversity across a vertical gradient in the water column during three seasons in the Eastern Tropical South Pacific (ETSP) OMZ. Based on analysis of small subunit ribosomal RNA (SSU rRNA) gene fragments, we found that both taxonomic and phylogenetic diversity declined steeply along the transition from oxygen-rich surface water to the permanent OMZ. We observed similar declines in the diversity of protein-coding gene categories, suggesting a decrease in functional (trait) diversity with depth. Metrics of functional and trait dispersion indicated that microbial communities are phylogenetically and functionally more overdispersed in oxic waters, but clustered within the OMZ. These dispersion patterns suggest that community assembly drivers (e.g., competition, environmental filtering) vary strikingly across the oxygen gradient. To understand the generality of our findings, we compared OMZ results to two marine depth gradients in subtropical oligotrophic sites and found that the oligotrophic sites did not display similar patterns, likely reflecting unique features found in the OMZ. Finally, we discuss how our results may relate to niche theory, diversity-energy relationships and stress gradients.

Acoustic Observation of Living Organisms Reveals the Upper Limit of the Oxygen Minimum Zone

PubMed Central

Bertrand, Arnaud; Ballón, Michael; Chaigneau, Alexis

2010-01-01

Background Oxygen minimum zones (OMZs) are expanding in the World Ocean as a result of climate change and direct anthropogenic influence. OMZ expansion greatly affects biogeochemical processes and marine life, especially by constraining the vertical habitat of most marine organisms. Currently, monitoring the variability of the upper limit of the OMZs relies on time intensive sampling protocols, causing poor spatial resolution. Methodology/Principal Findings Using routine underwater acoustic observations of the vertical distribution of marine organisms, we propose a new method that allows determination of the upper limit of the OMZ with a high precision. Applied in the eastern South-Pacific, this original sampling technique provides high-resolution information on the depth of the upper OMZ allowing documentation of mesoscale and submesoscale features (e.g., eddies and filaments) that structure the upper ocean and the marine ecosystems. We also use this information to estimate the habitable volume for the world's most exploited fish, the Peruvian anchovy (Engraulis ringens). Conclusions/Significance This opportunistic method could be implemented on any vessel geared with multi-frequency echosounders to perform comprehensive high-resolution monitoring of the upper limit of the OMZ. Our approach is a novel way of studying the impact of physical processes on marine life and extracting valid information about the pelagic habitat and its spatial structure, a crucial aspect of Ecosystem-based Fisheries Management in the current context of climate change. PMID:20442791

Characterization of the intra-annual variability in the Oxygen Minimum Zone (OMZ) off Peru

NASA Astrophysics Data System (ADS)

Paulmier, A.; Campos, F.; Dewitte, B.; Garcon, V.; Illig, S.; Carrasco, E.; Depretz de Gesincourt, O.; Grelet, J.; Ledesma, J. A.; Maes, C.; Montes, I.; Oschlies, A.; Quispe, J.; Scouarnec, L.

2016-02-01

The Oxygen Minimum Zones (OMZs) are oceanic deoxygenated layers between 50 and 1000 meters depth, which impact climate and ecosystems at both local and global scales. In particular, associated with the most productive upwelling system (10% of the world fisheries), the OMZ off Peru has the shallowest and most intense core with the lowest O2 concentration. Little is known on O2 variability at hourly to intra-seasonal timescales in this region. Thanks to the first long term subsurface mooring deployed off Lima (12°02'S, 77°40'W) at 30 nm from the coast, this study investigates the OMZ variability. The mooring consists in an instrumented line including sensors of pressure, temperature, salinity and oxygen located at 5 depths (30, 50, 75, 145 and 160 meters below the surface) with an acquisition frequency of 15 minutes during 14 months from January 5th , 2013 until February 21th, 2014. These data collected in the framework of the trans-disciplinary AMOP project (Activity of investigation dedicated to Oxygen Minimum Zone of the eastern Pacific) allow documenting the dynamics of both the oxycline and core and of their physical forcing (e.g. waves, wind). Three main regimes of variability are reported: sub-daily (< 1 day), sub-monthly (1-30 days) and sub-seasonal (30-90 days), which corresponds to distinct physical mechanisms. Preliminary results from a high-resolution coupled model platform are presented, which serve as material for the interpretation of the data.

CO2 maximum in the oxygen minimum zone (OMZ)

NASA Astrophysics Data System (ADS)

Paulmier, A.; Ruiz-Pino, D.; Garçon, V.

2011-02-01

Oxygen minimum zones (OMZs), known as suboxic layers which are mainly localized in the Eastern Boundary Upwelling Systems, have been expanding since the 20th "high CO2" century, probably due to global warming. OMZs are also known to significantly contribute to the oceanic production of N2O, a greenhouse gas (GHG) more efficient than CO2. However, the contribution of the OMZs on the oceanic sources and sinks budget of CO2, the main GHG, still remains to be established. We present here the dissolved inorganic carbon (DIC) structure, associated locally with the Chilean OMZ and globally with the main most intense OMZs (O2<20 μmol kg-1) in the open ocean. To achieve this, we examine simultaneous DIC and O2 data collected off Chile during 4 cruises (2000-2002) and a monthly monitoring (2000-2001) in one of the shallowest OMZs, along with international DIC and O2 databases and climatology for other OMZs. High DIC concentrations (>2225 μmol kg-1, up to 2350 μmol kg-1) have been reported over the whole OMZ thickness, allowing the definition for all studied OMZs a Carbon Maximum Zone (CMZ). Locally off Chile, the shallow cores of the OMZ and CMZ are spatially and temporally collocated at 21° S, 30° S and 36° S despite different cross-shore, long-shore and seasonal configurations. Globally, the mean state of the main OMZs also corresponds to the largest carbon reserves of the ocean in subsurface waters. The CMZs-OMZs could then induce a positive feedback for the atmosphere during upwelling activity, as potential direct local sources of CO2. The CMZ paradoxically presents a slight "carbon deficit" in its core (~10%), meaning a DIC increase from the oxygenated ocean to the OMZ lower than the corresponding O2 decrease (assuming classical C/O molar ratios). This "carbon deficit" would be related to regional thermal mechanisms affecting faster O2 than DIC (due to the carbonate buffer effect) and occurring upstream in warm waters (e.g., in the Equatorial Divergence), where the CMZ-OMZ core originates. The "carbon deficit" in the CMZ core would be mainly compensated locally at the oxycline, by a "carbon excess" induced by a specific remineralization. Indeed, a possible co-existence of bacterial heterotrophic and autotrophic processes usually occurring at different depths could stimulate an intense aerobic-anaerobic remineralization, inducing the deviation of C/O molar ratios from the canonical Redfield ratios. Further studies to confirm these results for all OMZs are required to understand the OMZ effects on both climatic feedback mechanisms and marine ecosystem perturbations.

Aspects of the distribution, population structure and reproduction of the gastropod Tibia delicatula (Nevill, 1881) inhabiting the oxygen minimum zone of the Oman and Pakistan continental margins

NASA Astrophysics Data System (ADS)

Ramirez-Llodra, Eva; Olabarria, Celia

2005-11-01

The present study describes some aspects of the distribution and biology of Tibia delicatula (Nevill), a gastropod belonging to the family Strombidae. This species has been found in large numbers in the upper oxygen minimum zone (OMZ) of the Oman margin, and has also been collected from the OMZ of the Pakistan margin. The highest abundance of adult specimens in the Oman OMZ was found between 300 and 450 m. Numbers dropped rapidly below 450 m, to zero below 500 m depth. Similarly dense populations were not observed in the Pakistan OMZ. Multiple regression with oxygen concentration and depth indicates that depth (and its related variables) is the main factor explaining the variation in abundance of T. delicatula. The populations from the Oman and Pakistan OMZs were dominated by juveniles. This suggests a unimodal size structure with evidence of a marked recruitment event. Basic reproductive aspects were analysed. All specimens had a penis and sperm groove. The gonad wall consisted of reticular tissue that might be used for nutrient storage or as an irrigation system. Only vitellogenic oocytes were present. The large oocyte sizes observed (200-300 μm) suggest a lecithotrophic larval development.

Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes

PubMed Central

Hawley, Alyse K.; Brewer, Heather M.; Norbeck, Angela D.; Paša-Tolić, Ljiljana; Hallam, Steven J.

2014-01-01

Marine oxygen minimum zones (OMZs) are intrinsic water column features arising from respiratory oxygen demand during organic matter degradation in stratified waters. Currently OMZs are expanding due to global climate change with resulting feedback on marine ecosystem function. Here we use metaproteomics to chart spatial and temporal patterns of gene expression along defined redox gradients in a seasonally stratified fjord to better understand microbial community responses to OMZ expansion. The expression of metabolic pathway components for nitrification, anaerobic ammonium oxidation (anammox), denitrification, and inorganic carbon fixation were differentially expressed across the redoxcline and covaried with distribution patterns of ubiquitous OMZ microbes including Thaumarchaeota, Nitrospina, Nitrospira, Planctomycetes, and SUP05/ARCTIC96BD-19 Gammaproteobacteria. Nitrification and inorganic carbon fixation pathways affiliated with Thaumarchaeota dominated dysoxic waters, and denitrification, sulfur oxidation, and inorganic carbon fixation pathways affiliated with the SUP05 group of nitrate-reducing sulfur oxidizers dominated suboxic and anoxic waters. Nitrifier nitrite oxidation and anammox pathways affiliated with Nirospina, Nitrospira, and Planctomycetes, respectively, also exhibited redox partitioning between dysoxic and suboxic waters. The numerical abundance of SUP05 proteins mediating inorganic carbon fixation under anoxic conditions suggests that SUP05 will become increasingly important in global ocean carbon and nutrient cycling as OMZs expand. PMID:25053816

Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes.

PubMed

Hawley, Alyse K; Brewer, Heather M; Norbeck, Angela D; Paša-Tolić, Ljiljana; Hallam, Steven J

2014-08-05

Marine oxygen minimum zones (OMZs) are intrinsic water column features arising from respiratory oxygen demand during organic matter degradation in stratified waters. Currently OMZs are expanding due to global climate change with resulting feedback on marine ecosystem function. Here we use metaproteomics to chart spatial and temporal patterns of gene expression along defined redox gradients in a seasonally stratified fjord to better understand microbial community responses to OMZ expansion. The expression of metabolic pathway components for nitrification, anaerobic ammonium oxidation (anammox), denitrification, and inorganic carbon fixation were differentially expressed across the redoxcline and covaried with distribution patterns of ubiquitous OMZ microbes including Thaumarchaeota, Nitrospina, Nitrospira, Planctomycetes, and SUP05/ARCTIC96BD-19 Gammaproteobacteria. Nitrification and inorganic carbon fixation pathways affiliated with Thaumarchaeota dominated dysoxic waters, and denitrification, sulfur oxidation, and inorganic carbon fixation pathways affiliated with the SUP05 group of nitrate-reducing sulfur oxidizers dominated suboxic and anoxic waters. Nitrifier nitrite oxidation and anammox pathways affiliated with Nirospina, Nitrospira, and Planctomycetes, respectively, also exhibited redox partitioning between dysoxic and suboxic waters. The numerical abundance of SUP05 proteins mediating inorganic carbon fixation under anoxic conditions suggests that SUP05 will become increasingly important in global ocean carbon and nutrient cycling as OMZs expand.

Ammonium and nitrite oxidation at nanomolar oxygen concentrations in oxygen minimum zone waters

PubMed Central

Bristow, Laura A.; Dalsgaard, Tage; Tiano, Laura; Mills, Daniel B.; Bertagnolli, Anthony D.; Wright, Jody J.; Hallam, Steven J.; Ulloa, Osvaldo; Canfield, Donald E.; Revsbech, Niels Peter; Thamdrup, Bo

2016-01-01

A major percentage of fixed nitrogen (N) loss in the oceans occurs within nitrite-rich oxygen minimum zones (OMZs) via denitrification and anammox. It remains unclear to what extent ammonium and nitrite oxidation co-occur, either supplying or competing for substrates involved in nitrogen loss in the OMZ core. Assessment of the oxygen (O2) sensitivity of these processes down to the O2 concentrations present in the OMZ core (<10 nmol⋅L−1) is therefore essential for understanding and modeling nitrogen loss in OMZs. We determined rates of ammonium and nitrite oxidation in the seasonal OMZ off Concepcion, Chile at manipulated O2 levels between 5 nmol⋅L−1 and 20 μmol⋅L−1. Rates of both processes were detectable in the low nanomolar range (5–33 nmol⋅L−1 O2), but demonstrated a strong dependence on O2 concentrations with apparent half-saturation constants (Kms) of 333 ± 130 nmol⋅L−1 O2 for ammonium oxidation and 778 ± 168 nmol⋅L−1 O2 for nitrite oxidation assuming one-component Michaelis–Menten kinetics. Nitrite oxidation rates, however, were better described with a two-component Michaelis–Menten model, indicating a high-affinity component with a Km of just a few nanomolar. As the communities of ammonium and nitrite oxidizers were similar to other OMZs, these kinetics should apply across OMZ systems. The high O2 affinities imply that ammonium and nitrite oxidation can occur within the OMZ core whenever O2 is supplied, for example, by episodic intrusions. These processes therefore compete with anammox and denitrification for ammonium and nitrite, thereby exerting an important control over nitrogen loss. PMID:27601665

Oxygen Pathways and Budget for the Eastern South Pacific Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Llanillo, P. J.; Pelegrí, J. L.; Talley, L. D.; Peña-Izquierdo, J.; Cordero, R. R.

2018-03-01

Ventilation of the eastern South Pacific Oxygen Minimum Zone (ESP-OMZ) is quantified using climatological Argo and dissolved oxygen data, combined with reanalysis wind stress data. We (1) estimate all oxygen fluxes (advection and turbulent diffusion) ventilating this OMZ, (2) quantify for the first time the oxygen contribution from the subtropical versus the traditionally studied tropical-equatorial pathway, and (3) derive a refined annual-mean oxygen budget for the ESP-OMZ. In the upper OMZ layer, net oxygen supply is dominated by tropical-equatorial advection, with more than one-third of this supply upwelling into the Ekman layer through previously unevaluated vertical advection, within the overturning component of the regional Subtropical Cell (STC). Below the STC, at the OMZ's core, advection is weak and turbulent diffusion (isoneutral and dianeutral) accounts for 89% of the net oxygen supply, most of it coming from the oxygen-rich subtropical gyre. In the deep OMZ layer, net oxygen supply occurs only through turbulent diffusion and is dominated by the tropical-equatorial pathway. Considering the entire OMZ, net oxygen supply (3.84 ± 0.42 µmol kg-1 yr-1) is dominated by isoneutral turbulent diffusion (56.5%, split into 32.3% of tropical-equatorial origin and 24.2% of subtropical origin), followed by isoneutral advection (32.0%, split into 27.6% of tropical-equatorial origin and 4.4% of subtropical origin) and dianeutral diffusion (11.5%). One-quarter (25.8%) of the net oxygen input escapes through dianeutral advection (most of it upwelling) and, assuming steady state, biological consumption is responsible for most of the oxygen loss (74.2%).

Aerobic Microbial Respiration in Oceanic Oxygen Minimum Zones

NASA Astrophysics Data System (ADS)

Kalvelage, Tim; Lavik, Gaute; Jensen, Marlene M.; Revsbech, Niels Peter; Schunck, Harald; Loescher, Carolin; Desai, Dhwani K.; LaRoche, Julie; Schmitz-Streit, Ruth; Kuypers, Marcel M. M.

2014-05-01

In the oxygen minimum zones (OMZs) of the tropical oceans, sluggish ventilation combined with strong microbial respiration of sinking organic matter results in the depletion of oxygen (O2). When O2 concentrations drop below ~5 µmol/L, organic matter is generally assumed to be respired with nitrate, ultimately leading to the loss of fixed inorganic nitrogen via anammox and denitrification. However, direct measurements of microbial O2 consumption at low O2 levels are - apart from a single experiment conducted in the OMZ off Peru - so far lacking. At the same time, consistently observed active aerobic ammonium and nitrite oxidation at non-detectable O2 concentrations (<1 µmol/L) in all major OMZs, suggests aerobic microorganisms, likely including heterotrophs, to be well adapted to near-anoxic conditions. Consequently, microaerobic (≤5 µmol/L) remineralization of organic matter, and thus release of ammonium, in low- O2 environments might be significantly underestimated at present. Here we present extensive measurements of microbial O2 consumption in OMZ waters, combined with highly sensitive O2 (STOX) measurements and meta-omic functional gene analyses. Short-term incubation experiments with labelled O2 (18-18O2) carried out in the Namibian and Peruvian OMZ, revealed persistent aerobic microbial activity at depths with non-detectable concentrations of O2 (≤50 nmol/L). In accordance, examination of metagenomes and metatranscriptomes from Chilean and Peruvian OMZ waters identified genes encoding for terminal respiratory oxidases with high O2 affinities as well as their expression by diverse microbial communities. Oxygen consumption was particularly enhanced near the upper OMZ boundaries and could mostly (~80%) be assigned to heterotrophic microbial activity. Compared to previously identified anaerobic microbial processes, microaerobic organic matter respiration was the dominant remineralization pathway and source of ammonium (~90%) in the upper Namibian and Peruvian OMZ. Our results reconcile so-far existing mismatches between ammonium sources and sinks in OMZs, and may help to improve biogeochemical modelling of the effects of future ocean de-oxygenation on aerobic and anaerobic organic matter remineralization in these zones.

Paleoceanographic insights on oxygen minimum zone expansion: Lessons from the most recent deglaciation

NASA Astrophysics Data System (ADS)

Moffitt, S. E.; Moffitt, R.; Sauthoff, W.; Davis, C. V.; Hewett, K.; Hill, T. M.

2013-12-01

The expansion of low oxygen hydrographic zones in the modern ocean, known as Oxygen Minimum Zones (OMZ), has the potential to deteriorate ecosystems, alter ocean nutrient cycling and inflict mass mortality events upon benthic and pelagic communities. During the last deglaciation (18-10 ka), large, climate-driven changes in the oxygen content of the upper ocean occurred. We propose that previous climate-driven OMZ expansions are data-rich events with which to characterize the spatial scales of OMZ hydrographic perturbation, and the temporal scales of natural OMZ variability. Here we synthesize a global compilation of marine sediment records from modern OMZ regions to investigate deglacial changes in the vertical extent, intensity, and surface area impingements of hypoxic waters upon continental margins. We surveyed sediment core records within water depths of 183-3,296 meters below sea level (mbsl) and took advantage of cores with geochemical, sedimentary or microfossil oxygenation proxies to reconstruct the timing, depth and intensity of seafloor hypoxia. OMZ maximum vertical extent during the deglaciation was variable by region: Subarctic Pacific (~600-2,900 mbsl), California Current (~330-1,500 mbsl), Baja and Mexico (~330-830 mbsl), and Equatorial Pacific and Humboldt Current (~110-3,100 mbsl). Expansion timing is regionally coherent but not globally synchronous, such that Subarctic Pacific and California Current marginal areas exhibit tight correlation and oxygenation reversals with Northern Hemisphere deglacial events (Termination 1A, Bølling-Allerød, Younger Dryas and Termination 1B). Southern regions (Baja and Mexico, and the Equatorial Pacific and Humboldt Current) exhibit hypoxia expansion prior to Termination 1A (~16 ka), and no oxygenation reversals. Our analysis provides new evidence for the geospatially coherent and temporally rapid expansion of OMZs during the last deglaciation, and reveals the extreme shallowness of the upper hypoxic boundary in coastal waters during events of global-scale warming.

Zooplankton Responses to Low-Oxygen Condition upon a Shallow Oxygen Minimum Zone in the Upwelling Region off Chile

NASA Astrophysics Data System (ADS)

Hidalgo, P.; Escribano, R.

2015-12-01

A shallow oxygen minimum zone (OMZ) is a critical component in the coastal upwelling ecosystem off Chile. This OMZ causes oxygen-deficient water entering the photic layer and affecting plankton communities having low tolerance to hypoxia. Variable, and usually species-dependent, responses of zooplankton to hypoxia condition can be found. Most dominant species avoid hypoxia by restricting their vertical distribution, while others can temporarily enter and even spent part of their life cycle within the OMZ. Whatever the case, low-oxygen conditions appear to affect virtually all vital rates of zooplankton, such as mortality, fecundity, development and growth and metabolism, and early developmental stages seem more sensitive, with significant consequences for population and community dynamics. For most study cases, these effects are negative at individual and population levels. Observations and predictions upon increasing upwelling intensity over the last 20-30 years indicate a gradual shoaling of the OMZ, and so that an expected enhancement of these negative effects of hypoxia on the zooplankton community. Unknown processes of adaptation and community-structure adjustments are expected to take place with uncertain consequences for the food web of this highly productive eastern boundary current ecosystem.

Distribution and ecophysiology of calanoid copepods in relation to the oxygen minimum zone in the eastern tropical atlantic.

PubMed

Teuber, Lena; Schukat, Anna; Hagen, Wilhelm; Auel, Holger

2013-01-01

Oxygen minimum zones (OMZs) affect distribution patterns, community structure and metabolic processes of marine organisms. Due to the prominent role of zooplankton, especially copepods, in the marine carbon cycle and the predicted intensification and expansion of OMZs, it is essential to understand the effects of hypoxia on zooplankton distribution and ecophysiology. For this study, calanoid copepods were sampled from different depths (0-1800 m) at eight stations in the eastern tropical Atlantic (3 °47'N to 18 °S) during three expeditions in 2010 and 2011. Their horizontal and vertical distribution was determined and related to the extent and intensity of the OMZ, which increased from north to south with minimum O2 concentrations (12.7 µmol kg(-1)) in the southern Angola Gyre. Calanoid copepod abundance was highest in the northeastern Angola Basin and decreased towards equatorial regions as well as with increasing depth. Maximum copepod biodiversity was observed in the deep waters of the central Angola Basin. Respiration rates and enzyme activities were measured to reveal species-specific physiological adaptations. Enzyme activities of the electron transport system (ETS) and lactate dehydrogenase (LDH) served as proxies for aerobic and anaerobic metabolic activity, respectively. Mass-specific respiration rates and ETS activities decreased with depth of occurrence, consistent with vertical changes in copepod body mass and ambient temperature. Copepods of the families Eucalanidae and Metridinidae dominated within the OMZ. Several of these species showed adaptive characteristics such as lower metabolic rates, additional anaerobic activity and diel vertical migration that enable them to successfully inhabit hypoxic zones.

Distribution and Ecophysiology of Calanoid Copepods in Relation to the Oxygen Minimum Zone in the Eastern Tropical Atlantic

PubMed Central

Teuber, Lena; Schukat, Anna; Hagen, Wilhelm; Auel, Holger

2013-01-01

Oxygen minimum zones (OMZs) affect distribution patterns, community structure and metabolic processes of marine organisms. Due to the prominent role of zooplankton, especially copepods, in the marine carbon cycle and the predicted intensification and expansion of OMZs, it is essential to understand the effects of hypoxia on zooplankton distribution and ecophysiology. For this study, calanoid copepods were sampled from different depths (0–1800 m) at eight stations in the eastern tropical Atlantic (3°47′N to 18°S) during three expeditions in 2010 and 2011. Their horizontal and vertical distribution was determined and related to the extent and intensity of the OMZ, which increased from north to south with minimum O2 concentrations (12.7 µmol kg−1) in the southern Angola Gyre. Calanoid copepod abundance was highest in the northeastern Angola Basin and decreased towards equatorial regions as well as with increasing depth. Maximum copepod biodiversity was observed in the deep waters of the central Angola Basin. Respiration rates and enzyme activities were measured to reveal species-specific physiological adaptations. Enzyme activities of the electron transport system (ETS) and lactate dehydrogenase (LDH) served as proxies for aerobic and anaerobic metabolic activity, respectively. Mass-specific respiration rates and ETS activities decreased with depth of occurrence, consistent with vertical changes in copepod body mass and ambient temperature. Copepods of the families Eucalanidae and Metridinidae dominated within the OMZ. Several of these species showed adaptive characteristics such as lower metabolic rates, additional anaerobic activity and diel vertical migration that enable them to successfully inhabit hypoxic zones. PMID:24223716

Niche segregation of ammonia-oxidizing archaea and anammox bacteria in the Arabian Sea oxygen minimum zone

PubMed Central

Pitcher, Angela; Villanueva, Laura; Hopmans, Ellen C; Schouten, Stefan; Reichart, Gert-Jan; Sinninghe Damsté, Jaap S

2011-01-01

Ammonia-oxidizing archaea (AOA) and anaerobic ammonia-oxidizing (anammox) bacteria have emerged as significant factors in the marine nitrogen cycle and are responsible for the oxidation of ammonium to nitrite and dinitrogen gas, respectively. Potential for an interaction between these groups exists; however, their distributions are rarely determined in tandem. Here we have examined the vertical distribution of AOA and anammox bacteria through the Arabian Sea oxygen minimum zone (OMZ), one of the most intense and vertically exaggerated OMZs in the global ocean, using a unique combination of intact polar lipid (IPL) and gene-based analyses, at both DNA and RNA levels. To screen for AOA-specific IPLs, we developed a high-performance liquid chromatography/mass spectrometry/mass spectrometry method targeting hexose-phosphohexose (HPH) crenarchaeol, a common IPL of cultivated AOA. HPH-crenarchaeol showed highest abundances in the upper OMZ transition zone at oxygen concentrations of ca. 5 μ, coincident with peaks in both thaumarchaeotal 16S rDNA and amoA gene abundances and gene expression. In contrast, concentrations of anammox-specific IPLs peaked within the core of the OMZ at 600 m, where oxygen reached the lowest concentrations, and coincided with peak anammox 16S rDNA and the hydrazine oxidoreductase (hzo) gene abundances and their expression. Taken together, the data reveal a unique depth distribution of abundant AOA and anammox bacteria and the segregation of their respective niches by >400 m, suggesting no direct coupling of their metabolisms at the time and site of sampling in the Arabian Sea OMZ. PMID:21593795

An eddy-stimulated hotspot for fixed nitrogen-loss from the Peru oxygen minimum zone

NASA Astrophysics Data System (ADS)

Altabet, M. A.; Ryabenko, E.; Stramma, L.; Wallace, D. W. R.; Frank, M.; Grasse, P.; Lavik, G.

2012-12-01

Fixed nitrogen (N) loss to biogenic N2 in intense oceanic O2 minimum zones (OMZ) accounts for a large fraction of the global N sink and is an essential control on the ocean's N-budget. However, major uncertainties exist regarding microbial pathways as well as net impact on the magnitude of N-loss and the ocean's overall N-budget. Here we report the discovery of a N-loss hotspot in the Peru OMZ associated with a coastally trapped mesoscale eddy that is marked by an extreme N-deficit matched by biogenic N2 production, high NO2- levels, and the highest isotope enrichments observed so far in OMZ's for the residual NO3-. High sea surface chlorophyll in seaward flowing streamers provides evidence for offshore eddy transport of highly productive, inshore water. Resulting pulses in the downward flux of particles likely stimulated heterotrophic dissimilatory NO3- reduction and subsequent production of biogenic N2 within the OMZ. A shallower biogenic N2 maximum within the oxycline is likely a feature advected by the eddy streamer from the shelf. Eddy-associated temporal-spatial heterogeneity of N-loss, mediated by a local succession of microbial processes, may explain inconsistencies observed among prior studies. Similar transient enhancements of N-loss likely occur within all other major OMZ's exerting a major influence on global ocean N and N isotope budgets.

Maintaining of the Eastern South Pacific Oxygen Minimum Zone (OMZ) off Chile

NASA Astrophysics Data System (ADS)

Paulmier, A.; Ruiz-Pino, D.; Garçon, V.; Farías, L.

2006-10-01

Processes regulating OMZs persistence in the oxygenated ocean remain poorly understood. Four cruises (21°-30°S) and fixed-point monitoring (36°S) between 2000 and 2002 using techniques adapted to O2 conditions as low as 1 μM allow a preliminary analysis of the entire Chilean OMZ structure. A shallow OMZ is observed in the three studied areas, although its structure differs. Off northern and central Chile, the OMZ is a permanent feature, more pronounced at the coast than further offshore. On the shelf, it forms in spring and erodes in fall. A conceptual model of two intermittent active or passive phases (intense or low biogeochemical O2 consumption) is proposed as a key mechanism for the local OMZ maintaining. The highest O2 consumptions are paradoxically favoured at the oxycline when the OMZ is less intense as offshore and on the shelf in spring and fall, suggesting a control by O2 availability of the OMZ remineralization.

Habitat Parameters for Oxygen Minimum Zone Copepods from the Eastern Tropical North Pacific

NASA Astrophysics Data System (ADS)

Wishner, K. F.; Outram, D.; Grassian, B.

2016-02-01

Oxygen minimum zones (OMZs) affect zooplankton distributions and may be expanding in worldwide spatial and vertical extent from climate change. We studied zooplankton (especially copepod) distributions in the Eastern Tropical North Pacific (ETNP) OMZ, using day-night vertically-stratified MOCNESS tows (0-1000m). Habitat parameters (temperature, oxygen, depth) were defined for abundant copepod species and groups. Zooplankton layers, with a unique suite of species, occurred at upper and lower OMZ oxyclines. At the mesopelagic lower oxycline, there was a layer with a characteristic species assemblage and a sharp 10X biomass increase compared to nearby depths. The lower oxycline layer occurred within a narrow very low oxygen concentration (2µM). At two stations with different OMZ vertical extents, the lower oxycline layer depth changed with OMZ thickness, remaining at the same oxygen concentration but different temperature. Life history habitat (diapause depth, temperature) of the copepod Eucalanus inermis was also affected. In the upper water column at the two stations, large diel vertical migrators (fish, euphausiids) descended to taxon-specific daytime depths in the mid OMZ, regardless of oxygen level, but copepod species distributions showed more variability and sensitivity to habitat parameters. We predict that, with moderate OMZ expansion, the lower oxycline community will likely shift depth, thus re-distributing midwater biomass, species, and processes. In the upper water column, large vertical migrator distributions may be less affected, while smaller taxa (copepods) will likely be sensitive to habitat changes. At some point, the ability to withstand these changes may be exceeded for particular taxa, with consequences for assemblages, trophic webs, and export. In keeping with the session theme, we hope to compare our oceanic findings with others' results from coastal hypoxic situations.

Paleoceanographic insights on recent oxygen minimum zone expansion: lessons for modern oceanography.

PubMed

Moffitt, Sarah E; Moffitt, Russell A; Sauthoff, Wilson; Davis, Catherine V; Hewett, Kathryn; Hill, Tessa M

2015-01-01

Climate-driven Oxygen Minimum Zone (OMZ) expansions in the geologic record provide an opportunity to characterize the spatial and temporal scales of OMZ change. Here we investigate OMZ expansion through the global-scale warming event of the most recent deglaciation (18-11 ka), an event with clear relevance to understanding modern anthropogenic climate change. Deglacial marine sediment records were compiled to quantify the vertical extent, intensity, surface area and volume impingements of hypoxic waters upon continental margins. By integrating sediment records (183-2,309 meters below sea level; mbsl) containing one or more geochemical, sedimentary or microfossil oxygenation proxies integrated with analyses of eustatic sea level rise, we reconstruct the timing, depth and intensity of seafloor hypoxia. The maximum vertical OMZ extent during the deglaciation was variable by region: Subarctic Pacific (~600-2,900 mbsl), California Current (~330-1,500 mbsl), Mexico Margin (~330-830 mbsl), and the Humboldt Current and Equatorial Pacific (~110-3,100 mbsl). The timing of OMZ expansion is regionally coherent but not globally synchronous. Subarctic Pacific and California Current continental margins exhibit tight correlation to the oscillations of Northern Hemisphere deglacial events (Termination IA, Bølling-Allerød, Younger Dryas and Termination IB). Southern regions (Mexico Margin and the Equatorial Pacific and Humboldt Current) exhibit hypoxia expansion prior to Termination IA (~14.7 ka), and no regional oxygenation oscillations. Our analyses provide new evidence for the geographically and vertically extensive expansion of OMZs, and the extreme compression of upper-ocean oxygenated ecosystems during the geologically recent deglaciation.

Paleoceanographic Insights on Recent Oxygen Minimum Zone Expansion: Lessons for Modern Oceanography

PubMed Central

Moffitt, Sarah E.; Moffitt, Russell A.; Sauthoff, Wilson; Davis, Catherine V.; Hewett, Kathryn; Hill, Tessa M.

2015-01-01

Climate-driven Oxygen Minimum Zone (OMZ) expansions in the geologic record provide an opportunity to characterize the spatial and temporal scales of OMZ change. Here we investigate OMZ expansion through the global-scale warming event of the most recent deglaciation (18-11 ka), an event with clear relevance to understanding modern anthropogenic climate change. Deglacial marine sediment records were compiled to quantify the vertical extent, intensity, surface area and volume impingements of hypoxic waters upon continental margins. By integrating sediment records (183-2,309 meters below sea level; mbsl) containing one or more geochemical, sedimentary or microfossil oxygenation proxies integrated with analyses of eustatic sea level rise, we reconstruct the timing, depth and intensity of seafloor hypoxia. The maximum vertical OMZ extent during the deglaciation was variable by region: Subarctic Pacific (~600-2,900 mbsl), California Current (~330-1,500 mbsl), Mexico Margin (~330-830 mbsl), and the Humboldt Current and Equatorial Pacific (~110-3,100 mbsl). The timing of OMZ expansion is regionally coherent but not globally synchronous. Subarctic Pacific and California Current continental margins exhibit tight correlation to the oscillations of Northern Hemisphere deglacial events (Termination IA, Bølling-Allerød, Younger Dryas and Termination IB). Southern regions (Mexico Margin and the Equatorial Pacific and Humboldt Current) exhibit hypoxia expansion prior to Termination IA (~14.7 ka), and no regional oxygenation oscillations. Our analyses provide new evidence for the geographically and vertically extensive expansion of OMZs, and the extreme compression of upper-ocean oxygenated ecosystems during the geologically recent deglaciation. PMID:25629508

Species-specific patterns of diel migration into the Oxygen Minimum Zone by euphausiids in the Humboldt Current Ecosystem

NASA Astrophysics Data System (ADS)

Antezana, Tarsicio

2009-12-01

A series of stratified bongo net samples taken over a 2 day period at ca. 18°S, about 20 nm off the coast of Peru, South America, suggest species-specific patterns of diel vertical migration into the Oxygen Minimum Zone (OMZ) of the Humboldt Current Ecosystem (HCE). The OMZ was the most dramatic feature of the water column and seemed to determine the extent of migration: Stylocheiron affine migrated only to the shallow oxycline; whereas Euphausia mucronata, Euphausia eximia, Euphausia distinguenda and Euphausia tenera migrated to the core of the OMZ; and Nematoscelis gracilis to beneath the core of the OMZ. Some differences were also found in the timing and duration of the ascent and descent, and residence times in shallow and deep layers. E. mucronata, N. gracilis and E. distinguenda displayed a normal descent during sunrise, and ascent during sunset. E. eximia and E. tenera also descended during sunrise but seemed to begin their ascent earlier in the afternoon and consequently shortened their deep residence times. S. affine showed the most extended residence times at the shallow layer and the shortest vertical displacement. Day and night vertical stratification and differences in the timing of migration into and out of the OMZ of the HCE suggest a community structure based on habitat partitioning whereby species avoided co-occurrence in time and space. Species-specific patterns of vertical stratification and migratory chronology are examined with regard to body and gill sizes, feeding adaptations of euphausiids, and potential food resources at the OMZ.

Abundance and phylogenetic identity of archaeoplankton in the permanent oxygen minimum zone of the eastern tropical South Pacific.

PubMed

Belmar, Lucy; Molina, Verónica; Ulloa, Osvaldo

2011-11-01

We assessed the abundance and molecular phylogeny of archaeoplankton in the oxygen minimum zone (OMZ) of the eastern tropical South Pacific, using specific-probe hybridization and phylogenetic analysis of the SSU-rRNA gene. Euryarchaea from Marine Group-II (MG-II) were most abundant in the surface oxic layer, representing 4.0±2.0% of the total picoplankton, while crenarchaea from Group I.1a (G-I.1a) peaked at the oxyclines, with a relative abundance of 8.1±4.3% (upper oxycline). In most of the stations, the abundance of both the groups decreased at the core of the OMZ, where a secondary maximum in cell density is commonly observed. The majority of the phylotypes affiliated with one of three groups: MG-II, euryarchaeal Marine Group-III (MG-III) and G-I.1a (75.9%, 12.8% and 10.3%, respectively). While MG-II phylotypes were found throughout the water column and G-I.1a ones were predominantly found within the oxyclines, MG-III phylotypes came almost exclusively from the OMZ core. Higher archaeal richness was found within the OMZ, with some of the exclusive lineages grouping with sequences from the deep ocean and hydrothermal vents. Moreover, G-I.1a sequences from the OMZ grouped into a different subcluster from the aerobic ammonium-oxidizer Nitrosopumilus maritimus. Thus, the community structure of archaeoplankton in OMZs is rich and distinct, with G-I.1a members particularly prominent at the oxyclines. © 2011 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

An eddy-stimulated hotspot for fixed nitrogen-loss from the Peru oxygen minimum zone

NASA Astrophysics Data System (ADS)

Altabet, M. A.; Ryabenko, E.; Stramma, L.; Wallace, D. W. R.; Frank, M.; Grasse, P.; Lavik, G.

2012-07-01

Fixed nitrogen (N) loss to biogenic N2 in intense oceanic O2 minimum zones (OMZ) accounts for a large fraction of the global N sink and is an essential control on the ocean's N budget. However, major uncertainties exist regarding microbial pathways as well as net impact on the magnitude of N-loss and the ocean's overall N budget. Here we report the discovery of a N-loss hotspot in the Peru OMZ associated with a coastally trapped mesoscale eddy that is marked by an extreme N deficit matched by biogenic N2 production, high NO2- levels, and the highest isotope enrichments observed so far in OMZ's for the residual NO3-. High sea surface chlorophyll (SSC) in seaward flowing streamers provides evidence for offshore eddy transport of highly productive, inshore water. Resulting pulses in the downward flux of particles likely stimulated heterotrophic dissimilatory NO3- reduction and subsequent production of biogenic N2. The associated temporal/spatial heterogeneity of N-loss, mediated by a local succession of microbial processes, may explain inconsistencies observed among prior studies. Similar transient enhancements of N-loss likely occur within all other major OMZ's exerting a major influence on global ocean N and N isotope budgets.

Nitrous oxide production in the eastern tropical South Pacific oxygen minimum zone

NASA Astrophysics Data System (ADS)

Ji, Qixing; Altabet, Mark; Arevalo-Martinez, Damian; Bange, Hermann; Ma, Xiao; Marandino, Christa; Sun, Mingshuang; Grundle, Damian

2017-04-01

Nitrous oxide (N2O) is an important climate active trace gas that contributes to both atmospheric warming and ozone destruction, and the ocean is an important source of N2O to the atmosphere. Dissolved oxygen concentrations play an important role in regulating N2O production in the ocean, such that under low oxygen conditions major shifts in the predominant production pathways (i.e. nitrification vs. denitrification) can occur and the magnitude of production may increase substantially. To this end, major oceanic oxygen minimum zones (OMZs) are responsible for a disproportionately high amount of marine N2O production. During the October 2015 ASTRA-OMZ cruise to the eastern tropical South Pacific (ETSP), one of the three major oceanic OMZs, we measured a suite of N2O parameters which included N2O concentrations, N2O production, and natural abundance N2O isotope (i.e. del 15N and del 18O) and isotopomer (i.e. 15N site-preference) signatures. Based on the results from these measurements, our presentation will demonstrate how N2O production and the different production pathways change along the oxygen concentration gradients from the oxygenated surface waters through the oxygen minimum layer. Our data could better constrain the importance of the ETSP-OMZ as source of marine N2O. Results from this work will provide insights into how N2O cycling responds to ocean deoxygenation as a result of climate change.

Activity and diversity of aerobic methanotrophs in a coastal marine oxygen minimum zone

NASA Astrophysics Data System (ADS)

Padilla, C. C.; Bristow, L. A.; Sarode, N. D.; Garcia-Robledo, E.; Girguis, P. R.; Thamdrup, B.; Stewart, F. J.

2016-02-01

The pelagic ocean is a sink for the potent greenhouse gas methane, with methane consumption regulated primarily by aerobic methane-oxidizing bacteria (MOB). Marine oxygen minimum zones (OMZs) contain the largest pool of pelagic methane in the oceans but remain largely unexplored for their potential to harbor MOB communities and contribute to methane cycling. Here, we present meta-omic and geochemical evidence that aerobic MOB are present and active in a coastal OMZ, in Golfo Dulce, Costa Rica. Oxygen concentrations were < 50 nM below 85 m, and sulfide accumulated below 140 m, with methane concentrations ranging from trace levels above the oxycline to 78 nM at 180 m. The upper OMZ (90 m) was characterized by an abundant MOB and methylotroph community representing diverse lineages of the Methylophilaceae, Methylophaga, and Methylococcales. Of these, Type I methanotrophs of the Order Methylococcales dominated , representing >5% of total 16S rRNA genes and >19% of 16S rRNA transcripts. This peak in ribosomal abundance and activity was affiliated with methane oxidation rates of 2.6 ± 0.7 nM d-1, measured in seawater incubations with estimated O2 concentrations of 50 nM. Rates fell to zero with the addition of acetylene, an inhibitor of aerobic methanotrophy. In contrast, methane oxidation was below detection at lower depths in the OMZ (100 m and 120 m). Metatranscriptome sequencing indicated a peak at 90 m in the expression of pathways essential to Methylococcales, including aerobic methanotrophy and the RuMP pathway of carbon assimilation, as well as the serine pathway of Type II methanotrophs. Preliminary analysis of single-cell genomes suggests distinct adaptations by Methylococcales from the Golfo Dulce, helping explain the persistence of putative aerobic methanotrophs under very low oxygen in this OMZ. Taken together, these data suggest the boundary layers of OMZs, despite extreme oxygen depletion, are a niche for aerobic MOBs and therefore potentially important zones of pelagic methane loss.

SAR11 bacteria linked to ocean anoxia and nitrogen loss

NASA Astrophysics Data System (ADS)

Tsementzi, Despina; Wu, Jieying; Deutsch, Samuel; Nath, Sangeeta; Rodriguez-R, Luis M.; Burns, Andrew S.; Ranjan, Piyush; Sarode, Neha; Malmstrom, Rex R.; Padilla, Cory C.; Stone, Benjamin K.; Bristow, Laura A.; Larsen, Morten; Glass, Jennifer B.; Thamdrup, Bo; Woyke, Tanja; Konstantinidis, Konstantinos T.; Stewart, Frank J.

2016-08-01

Bacteria of the SAR11 clade constitute up to one half of all microbial cells in the oxygen-rich surface ocean. SAR11 bacteria are also abundant in oxygen minimum zones (OMZs), where oxygen falls below detection and anaerobic microbes have vital roles in converting bioavailable nitrogen to N2 gas. Anaerobic metabolism has not yet been observed in SAR11, and it remains unknown how these bacteria contribute to OMZ biogeochemical cycling. Here, genomic analysis of single cells from the world’s largest OMZ revealed previously uncharacterized SAR11 lineages with adaptations for life without oxygen, including genes for respiratory nitrate reductases (Nar). SAR11 nar genes were experimentally verified to encode proteins catalysing the nitrite-producing first step of denitrification and constituted ~40% of OMZ nar transcripts, with transcription peaking in the anoxic zone of maximum nitrate reduction activity. These results link SAR11 to pathways of ocean nitrogen loss, redefining the ecological niche of Earth’s most abundant organismal group.

SAR11 bacteria linked to ocean anoxia and nitrogen loss.

PubMed

Tsementzi, Despina; Wu, Jieying; Deutsch, Samuel; Nath, Sangeeta; Rodriguez-R, Luis M; Burns, Andrew S; Ranjan, Piyush; Sarode, Neha; Malmstrom, Rex R; Padilla, Cory C; Stone, Benjamin K; Bristow, Laura A; Larsen, Morten; Glass, Jennifer B; Thamdrup, Bo; Woyke, Tanja; Konstantinidis, Konstantinos T; Stewart, Frank J

2016-08-11

Bacteria of the SAR11 clade constitute up to one half of all microbial cells in the oxygen-rich surface ocean. SAR11 bacteria are also abundant in oxygen minimum zones (OMZs), where oxygen falls below detection and anaerobic microbes have vital roles in converting bioavailable nitrogen to N2 gas. Anaerobic metabolism has not yet been observed in SAR11, and it remains unknown how these bacteria contribute to OMZ biogeochemical cycling. Here, genomic analysis of single cells from the world's largest OMZ revealed previously uncharacterized SAR11 lineages with adaptations for life without oxygen, including genes for respiratory nitrate reductases (Nar). SAR11 nar genes were experimentally verified to encode proteins catalysing the nitrite-producing first step of denitrification and constituted ~40% of OMZ nar transcripts, with transcription peaking in the anoxic zone of maximum nitrate reduction activity. These results link SAR11 to pathways of ocean nitrogen loss, redefining the ecological niche of Earth's most abundant organismal group.

SAR11 bacteria linked to ocean anoxia and nitrogen loss

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tsementzi, Despina; Wu, Jieying; Deutsch, Samuel

Bacteria of the SAR11 clade constitute up to one half of all microbial cells in the oxygen-rich surface ocean. SAR11 bacteria are also abundant in oxygen minimum zones (OMZs), where oxygen falls below detection and anaerobic microbes have vital roles in converting bioavailable nitrogen to N 2 gas. Anaerobic metabolism has not yet been observed in SAR11, and it remains unknown how these bacteria contribute to OMZ biogeochemical cycling. Here in this paper, genomic analysis of single cells from the world's largest OMZ revealed previously uncharacterized SAR11 lineages with adaptations for life without oxygen, including genes for respiratory nitrate reductasesmore » (Nar). SAR11 nar genes were experimentally verified to encode proteins catalysing the nitrite-producing first step of denitrification and constituted ~40% of OMZ nar transcripts, with transcription peaking in the anoxic zone of maximum nitrate reduction activity. Finally, these results link SAR11 to pathways of ocean nitrogen loss, redefining the ecological niche of Earth's most abundant organismal group.« less

SAR11 bacteria linked to ocean anoxia and nitrogen loss

DOE PAGES

Tsementzi, Despina; Wu, Jieying; Deutsch, Samuel; ...

2016-08-03

Bacteria of the SAR11 clade constitute up to one half of all microbial cells in the oxygen-rich surface ocean. SAR11 bacteria are also abundant in oxygen minimum zones (OMZs), where oxygen falls below detection and anaerobic microbes have vital roles in converting bioavailable nitrogen to N 2 gas. Anaerobic metabolism has not yet been observed in SAR11, and it remains unknown how these bacteria contribute to OMZ biogeochemical cycling. Here in this paper, genomic analysis of single cells from the world's largest OMZ revealed previously uncharacterized SAR11 lineages with adaptations for life without oxygen, including genes for respiratory nitrate reductasesmore » (Nar). SAR11 nar genes were experimentally verified to encode proteins catalysing the nitrite-producing first step of denitrification and constituted ~40% of OMZ nar transcripts, with transcription peaking in the anoxic zone of maximum nitrate reduction activity. Finally, these results link SAR11 to pathways of ocean nitrogen loss, redefining the ecological niche of Earth's most abundant organismal group.« less

Expansion of oxygen minimum zones may reduce available habitat for tropical pelagic fishes

NASA Astrophysics Data System (ADS)

Stramma, Lothar; Prince, Eric D.; Schmidtko, Sunke; Luo, Jiangang; Hoolihan, John P.; Visbeck, Martin; Wallace, Douglas W. R.; Brandt, Peter; Körtzinger, Arne

2012-01-01

Climate model predictions and observations reveal regional declines in oceanic dissolved oxygen, which are probably influenced by global warming. Studies indicate ongoing dissolved oxygen depletion and vertical expansion of the oxygen minimum zone (OMZ) in the tropical northeast Atlantic Ocean. OMZ shoaling may restrict the usable habitat of billfishes and tunas to a narrow surface layer. We report a decrease in the upper ocean layer exceeding 3.5mll-1 dissolved oxygen at a rate of <=1myr-1 in the tropical northeast Atlantic (0-25°N, 12-30°W), amounting to an annual habitat loss of ~5.95×1013m3, or 15% for the period 1960-2010. Habitat compression and associated potential habitat loss was validated using electronic tagging data from 47 blue marlin. This phenomenon increases vulnerability to surface fishing gear for billfishes and tunas, and may be associated with a 10-50% worldwide decline of pelagic predator diversity. Further expansion of the Atlantic OMZ along with overfishing may threaten the sustainability of these valuable pelagic fisheries and marine ecosystems.

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone

PubMed Central

Ganesh, Sangita; Parris, Darren J; DeLong, Edward F; Stewart, Frank J

2014-01-01

Marine oxygen minimum zones (OMZs) support diverse microbial communities with roles in major elemental cycles. It is unclear how the taxonomic composition and metabolism of OMZ microorganisms vary between particle-associated and free-living size fractions. We used amplicon (16S rRNA gene) and shotgun metagenome sequencing to compare microbial communities from large (>1.6 μm) and small (0.2–1.6 μm) filter size fractions along a depth gradient in the OMZ off Chile. Despite steep vertical redox gradients, size fraction was a significantly stronger predictor of community composition compared to depth. Phylogenetic diversity showed contrasting patterns, decreasing towards the anoxic OMZ core in the small size fraction, but exhibiting maximal values at these depths within the larger size fraction. Fraction-specific distributions were evident for key OMZ taxa, including anammox planctomycetes, whose coding sequences were enriched up to threefold in the 0.2–1.6 μm community. Functional gene composition also differed between fractions, with the >1.6 μm community significantly enriched in genes mediating social interactions, including motility, adhesion, cell-to-cell transfer, antibiotic resistance and mobile element activity. Prokaryotic transposase genes were three to six fold more abundant in this fraction, comprising up to 2% of protein-coding sequences, suggesting that particle surfaces may act as hotbeds for transposition-based genome changes in marine microbes. Genes for nitric and nitrous oxide reduction were also more abundant (three to seven fold) in the larger size fraction, suggesting microniche partitioning of key denitrification steps. These results highlight an important role for surface attachment in shaping community metabolic potential and genome content in OMZ microorganisms. PMID:24030599

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone.

PubMed

Ganesh, Sangita; Parris, Darren J; DeLong, Edward F; Stewart, Frank J

2014-01-01

Marine oxygen minimum zones (OMZs) support diverse microbial communities with roles in major elemental cycles. It is unclear how the taxonomic composition and metabolism of OMZ microorganisms vary between particle-associated and free-living size fractions. We used amplicon (16S rRNA gene) and shotgun metagenome sequencing to compare microbial communities from large (>1.6 μm) and small (0.2-1.6 μm) filter size fractions along a depth gradient in the OMZ off Chile. Despite steep vertical redox gradients, size fraction was a significantly stronger predictor of community composition compared to depth. Phylogenetic diversity showed contrasting patterns, decreasing towards the anoxic OMZ core in the small size fraction, but exhibiting maximal values at these depths within the larger size fraction. Fraction-specific distributions were evident for key OMZ taxa, including anammox planctomycetes, whose coding sequences were enriched up to threefold in the 0.2-1.6 μm community. Functional gene composition also differed between fractions, with the >1.6 μm community significantly enriched in genes mediating social interactions, including motility, adhesion, cell-to-cell transfer, antibiotic resistance and mobile element activity. Prokaryotic transposase genes were three to six fold more abundant in this fraction, comprising up to 2% of protein-coding sequences, suggesting that particle surfaces may act as hotbeds for transposition-based genome changes in marine microbes. Genes for nitric and nitrous oxide reduction were also more abundant (three to seven fold) in the larger size fraction, suggesting microniche partitioning of key denitrification steps. These results highlight an important role for surface attachment in shaping community metabolic potential and genome content in OMZ microorganisms.

Oxygen minimum zones in the eastern tropical Atlantic and Pacific oceans

NASA Astrophysics Data System (ADS)

Karstensen, Johannes; Stramma, Lothar; Visbeck, Martin

2008-06-01

Within the eastern tropical oceans of the Atlantic and Pacific basin vast oxygen minimum zones (OMZ) exist in the depth range between 100 and 900 m. Minimum oxygen values are reached at 300-500 m depth which in the eastern Pacific become suboxic (dissolved oxygen content <4.5 μmol kg -1) with dissolved oxygen concentration of less than 1 μmol kg -1. The OMZ of the eastern Atlantic is not suboxic and has relatively high oxygen minimum values of about 17 μmol kg -1 in the South Atlantic and more than 40 μmol kg -1 in the North Atlantic. About 20 (40%) of the North Pacific volume is occupied by an OMZ when using 45 μmol kg -1 (or 90 μmol kg -1, respectively) as an upper bound for OMZ oxygen concentration for ocean densities lighter than σθ < 27.2 kg m -3. The relative volumes reduce to less than half for the South Pacific (7% and 13%, respectively). The abundance of OMZs are considerably smaller (1% and 7%) for the South Atlantic and only ∼0% and 5% for the North Atlantic. Thermal domes characterized by upward displacements of isotherms located in the northeastern Pacific and Atlantic and in the southeastern Atlantic are co-located with the centres of the OMZs. They seem not to be directly involved in the generation of the OMZs. OMZs are a consequence of a combination of weak ocean ventilation, which supplies oxygen, and respiration, which consumes oxygen. Oxygen consumption can be approximated by the apparent oxygen utilization (AOU). However, AOU scaled with an appropriate consumption rate (aOUR) gives a time, the oxygen age. Here we derive oxygen ages using climatological AOU data and an empirical estimate of aOUR. Averaging oxygen ages for main thermocline isopycnals of the Atlantic and Pacific Ocean exhibit an exponential increase with density without an obvious signature of the OMZs. Oxygen supply originates from a surface outcrop area and can also be approximated by the turn-over time, the ratio of ocean volume to ventilating flux. The turn-over time corresponds well to the average oxygen ages for the well ventilated waters. However, in the density ranges of the suboxic OMZs the turn-over time substantially increases. This indicates that reduced ventilation in the outcrop is directly related to the existence of suboxic OMZs, but they are not obviously related to enhanced consumption indicated by the oxygen ages. The turn-over time suggests that the lower thermocline of the North Atlantic would be suboxic but at present this is compensated by the import of water from the well ventilated South Atlantic. The turn-over time approach itself is independent of details of ocean transport pathways. Instead the geographical location of the OMZ is to first order determined by: (i) the patterns of upwelling, either through Ekman or equatorial divergence, (ii) the regions of general sluggish horizontal transport at the eastern boundaries, and (iii) to a lesser extent to regions with high productivity as indicated through ocean colour data.

SAR11 bacteria linked to ocean anoxia and nitrogen loss

PubMed Central

Tsementzi, Despina; Wu, Jieying; Deutsch, Samuel; Nath, Sangeeta; Rodriguez-R, Luis M; Burns, Andrew S.; Ranjan, Piyush; Sarode, Neha; Malmstrom, Rex R.; Padilla, Cory C.; Stone, Benjamin K.; Bristow, Laura A.; Larsen, Morten; Glass, Jennifer B.; Thamdrup, Bo; Woyke, Tanja; Konstantinidis, Konstantinos T.; Stewart, Frank J.

2016-01-01

Summary Bacteria of the SAR11 clade constitute up to one half of all microbial cells in the oxygen-rich surface ocean. DNA sequences from SAR11 are also abundant in oxygen minimum zones (OMZs) where oxygen falls below detection and anaerobic microbes play important roles in converting bioavailable nitrogen to N2 gas. Evidence for anaerobic metabolism in SAR11 has not yet been observed, and the question of how these bacteria contribute to OMZ biogeochemical cycling is unanswered. Here, we identify the metabolic basis for SAR11 activity in anoxic ocean waters. Genomic analysis of single cells from the world’s largest OMZ revealed diverse and previously uncharacterized SAR11 lineages that peak in abundance at anoxic depths, but are largely undetectable in oxygen-rich ocean regions. OMZ SAR11 contain adaptations to low oxygen, including genes for respiratory nitrate reductases (Nar). SAR11 nar genes were experimentally verified to encode proteins catalyzing the nitrite-producing first step of denitrification and constituted ~40% of all OMZ nar transcripts, with transcription peaking in the zone of maximum nitrate reduction rates. These results redefine the ecological niche of Earth’s most abundant organismal group and suggest an important contribution of SAR11 to nitrite production in OMZs, and thus to pathways of ocean nitrogen loss. PMID:27487207

Intensification and deepening of the Arabian Sea Oxygen Minimum Zone in response to increase in Indian monsoon wind intensity

NASA Astrophysics Data System (ADS)

Lachkar, Zouhair; Smith, Shafer; Levy, Marina

2017-04-01

The decline in oxygen supply to the ocean associated with global warming of sea-surface temperatures is expected to expand the oxygen minimum zones (OMZs). This global trend can be attenuated or amplified by regional processes. In the Arabian Sea, the World's thickest OMZ is highly vulnerable to changes in the Indian monsoon wind. Evidence from paleo records and future climate projections indicate strong variations of the Indian monsoon wind intensity over climatic timescales. Yet, the response of the OMZ to these wind changes remains poorly understood and its amplitude and timescale unexplored. Here, we investigate the impacts of perturbations in Indian monsoon wind intensity (from -50% to +50%) on the size and intensity of the Arabian Sea OMZ, and examine the biogeochemical and ecological implications of these changes. To this end, we conducted a series of eddy-resolving simulations of the Arabian Sea using the Regional Oceanic Modeling System (ROMS) coupled to a nitrogen based Nutrient-Phytoplankton-Zooplankton-Detritus (NPZD) ecosystem model that includes a representation of the O2 cycle. We show that the Arabian Sea productivity increases and its OMZ expands and deepens in response to monsoon wind intensification. These responses are dominated by the perturbation of the summer monsoon wind, whereas the changes in the winter monsoon wind play a secondary role. While the productivity responds quickly and nearly linearly to wind increase (i.e., on a timescale of years), the OMZ response is much slower (i.e., a timescale of decades). Our analysis reveals that the OMZ expansion at depth is driven by increased oxygen biological consumption, whereas its surface weakening is induced by increased lateral ventilation. The enhanced lateral ventilation favors episodic intrusions of oxic waters in the lower epipelagic zone (100-200m) of the western and central Arabian Sea, leading to intermittent expansions of habitats and a more frequent alternation of hypoxic and oxic conditions there. The increased productivity and deepening of the OMZ also lead to a strong intensification of denitrification at depth, resulting in a substantial amplification of fixed nitrogen depletion in the Arabian Sea. We conclude that changes in the Indian monsoon can affect, on longer timescales, the large-scale biogeochemical cycles of nitrogen and carbon, with a positive feedback on climate change in the case of stronger winds.

Aerobic Microbial Respiration In Oceanic Oxygen Minimum Zones.

PubMed

Kalvelage, Tim; Lavik, Gaute; Jensen, Marlene M; Revsbech, Niels Peter; Löscher, Carolin; Schunck, Harald; Desai, Dhwani K; Hauss, Helena; Kiko, Rainer; Holtappels, Moritz; LaRoche, Julie; Schmitz, Ruth A; Graco, Michelle I; Kuypers, Marcel M M

2015-01-01

Oxygen minimum zones are major sites of fixed nitrogen loss in the ocean. Recent studies have highlighted the importance of anaerobic ammonium oxidation, anammox, in pelagic nitrogen removal. Sources of ammonium for the anammox reaction, however, remain controversial, as heterotrophic denitrification and alternative anaerobic pathways of organic matter remineralization cannot account for the ammonium requirements of reported anammox rates. Here, we explore the significance of microaerobic respiration as a source of ammonium during organic matter degradation in the oxygen-deficient waters off Namibia and Peru. Experiments with additions of double-labelled oxygen revealed high aerobic activity in the upper OMZs, likely controlled by surface organic matter export. Consistently observed oxygen consumption in samples retrieved throughout the lower OMZs hints at efficient exploitation of vertically and laterally advected, oxygenated waters in this zone by aerobic microorganisms. In accordance, metagenomic and metatranscriptomic analyses identified genes encoding for aerobic terminal oxidases and demonstrated their expression by diverse microbial communities, even in virtually anoxic waters. Our results suggest that microaerobic respiration is a major mode of organic matter remineralization and source of ammonium (~45-100%) in the upper oxygen minimum zones, and reconcile hitherto observed mismatches between ammonium producing and consuming processes therein.

Aerobic Microbial Respiration In Oceanic Oxygen Minimum Zones

PubMed Central

Kalvelage, Tim; Lavik, Gaute; Jensen, Marlene M.; Revsbech, Niels Peter; Löscher, Carolin; Schunck, Harald; Desai, Dhwani K.; Hauss, Helena; Kiko, Rainer; Holtappels, Moritz; LaRoche, Julie; Schmitz, Ruth A.; Graco, Michelle I.; Kuypers, Marcel M. M.

2015-01-01

Oxygen minimum zones are major sites of fixed nitrogen loss in the ocean. Recent studies have highlighted the importance of anaerobic ammonium oxidation, anammox, in pelagic nitrogen removal. Sources of ammonium for the anammox reaction, however, remain controversial, as heterotrophic denitrification and alternative anaerobic pathways of organic matter remineralization cannot account for the ammonium requirements of reported anammox rates. Here, we explore the significance of microaerobic respiration as a source of ammonium during organic matter degradation in the oxygen-deficient waters off Namibia and Peru. Experiments with additions of double-labelled oxygen revealed high aerobic activity in the upper OMZs, likely controlled by surface organic matter export. Consistently observed oxygen consumption in samples retrieved throughout the lower OMZs hints at efficient exploitation of vertically and laterally advected, oxygenated waters in this zone by aerobic microorganisms. In accordance, metagenomic and metatranscriptomic analyses identified genes encoding for aerobic terminal oxidases and demonstrated their expression by diverse microbial communities, even in virtually anoxic waters. Our results suggest that microaerobic respiration is a major mode of organic matter remineralization and source of ammonium (~45-100%) in the upper oxygen minimum zones, and reconcile hitherto observed mismatches between ammonium producing and consuming processes therein. PMID:26192623

Oxygen and Temperature Effects on Vertically Migrating Animals in Oxygen Minimum Zones

NASA Astrophysics Data System (ADS)

Seibel, B.

2016-02-01

Large populations of oceanic nekton and zooplankton undergo daily migrations from shallow water at night to depths greater than 200 m during the daytime. In some regions, these migrations cross extreme gradients of temperature, oxygen and carbon dioxide. Oxygen minimum zones (OMZs) are extensive and characterized by deep-water (100-800 m) oxygen partial pressures that would be lethal to most marine organisms, yet are tolerated by vertical migrators. Climate change is predicted to further deplete oxygen, and measurable reductions in oxygen have already been documented in some regions. Increases in shallow water temperature and carbon dioxide are occurring simultaneously. Oxygen levels and temperature are important drivers of biodiversity and distribution, and documented changes in community structure and function are reportedly associated with OMZ expansion and warming. Here I answer fundamental questions concerning zooplankton distributions, adaptations, and functions in oxygen minimum zones. In particular I report that metabolic suppression is a common strategy that facilitates diel occupancy of extreme hypoxia in many oceanic taxa. Anaerobic metabolic pathways play a minimal role in compensating for reduced aerobic ATP production. Numerous epigenetic mechanisms lead to reductions in energetically costly cellular processes, such as transcription and translation. Total metabolism is reduced by 50% or more during exposure to levels of hypoxia that characterize the daytime habitat for most vertically-migrating zooplankton. I further show that many migrators approach their upper thermal maximum in shallow water at night. Thus expanding OMZs and global warming may together compress the habitable depth range for many species.

Intensification and deepening of the Arabian Sea oxygen minimum zone in response to increase in Indian monsoon wind intensity

NASA Astrophysics Data System (ADS)

Lachkar, Zouhair; Lévy, Marina; Smith, Shafer

2018-01-01

The decline in oxygen supply to the ocean associated with global warming is expected to expand oxygen minimum zones (OMZs). This global trend can be attenuated or amplified by regional processes. In the Arabian Sea, the world's thickest OMZ is highly vulnerable to changes in the Indian monsoon wind. Evidence from paleo-records and future climate projections indicates strong variations of the Indian monsoon wind intensity over climatic timescales. Yet, the response of the OMZ to these wind changes remains poorly understood and its amplitude and timescale unexplored. Here, we investigate the impacts of perturbations in Indian monsoon wind intensity (from -50 to +50 %) on the size and intensity of the Arabian Sea OMZ, and examine the biogeochemical and ecological implications of these changes. To this end, we conducted a series of eddy-resolving simulations of the Arabian Sea using the Regional Ocean Modeling System (ROMS) coupled to a nitrogen-based nutrient-phytoplankton-zooplankton-detritus (NPZD) ecosystem model that includes a representation of the O2 cycle. We show that the Arabian Sea productivity increases and its OMZ expands and deepens in response to monsoon wind intensification. These responses are dominated by the perturbation of the summer monsoon wind, whereas the changes in the winter monsoon wind play a secondary role. While the productivity responds quickly and nearly linearly to wind increase (i.e., on a timescale of years), the OMZ response is much slower (i.e., a timescale of decades). Our analysis reveals that the OMZ expansion at depth is driven by increased oxygen biological consumption, whereas its surface weakening is induced by increased ventilation. The enhanced ventilation favors episodic intrusions of oxic waters in the lower epipelagic zone (100-200 m) of the western and central Arabian Sea, leading to intermittent expansions of marine habitats and a more frequent alternation of hypoxic and oxic conditions there. The increased productivity and deepening of the OMZ also lead to a strong intensification of denitrification at depth, resulting in a substantial amplification of fixed nitrogen depletion in the Arabian Sea. We conclude that changes in the Indian monsoon can affect, on longer timescales, the large-scale biogeochemical cycles of nitrogen and carbon, with a positive feedback on climate change in the case of stronger winds. Additional potential changes in large-scale ocean ventilation and stratification may affect the sensitivity of the Arabian Sea OMZ to monsoon intensification.

Enhanced Sulfate Reduction and Carbon Sequestration in Sediments Underlying the Core of the Arabian Sea Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Fernandes, S. Q.; Mazumdar, A.; Peketi, A.; Bhattacharya, S.; Carvalho, M.; Da Silva, R.; Roy, R.; Mapder, T.; Roy, C.; Banik, S. K.; Ghosh, W.

2017-12-01

The oxygen minimum zone (OMZ) of the Arabian Sea in the northern Indian Ocean is one of the three major global sites of open ocean denitrification. The functionally anoxic water column between 150 to 1200 mbsl plays host to unique biogeochemical processes and organism interactions. Little is known, however, about the consequence of the low dissolved oxygen on the underlying sedimentary biogeochemical processes. Here we present, for the first time, a comprehensive investigation of sediment biogeochemistry of the Arabian Sea OMZ by coupling pore fluid analyses with microbial diversity data in eight sediment cores collected across a transect off the west coast of India in the Eastern Arabian Sea. We observed that in sediments underlying the core of the OMZ, high organic carbon sequestration coincides with a high diversity of all bacteria (the majority of which are complex organic matter hydrolyzers) and sulfate reducing bacteria (simple organic compound utilizers). Depth-integrated sulfate reduction rate also intensifies in this territory. These biogeochemical features, together with the detected shallowing of the sulfate-methane interface and buildup of pore-water sulfide, are all reflective of heightened carbon-sulfur cycling in the sediments underlying the OMZ core. Our data suggests that the sediment biogeochemistry of the OMZ is sensitive to minute changes in bottom water dissolved oxygen, and is dictated by the potential abundance and bioavailability of complex to simple carbon compounds which can stimulate a cascade of geomicrobial activities pertaining to the carbon-sulfur cycle. Our findings hold implications in benthic ecology and sediment diagenesis.

Community composition of ammonia-oxidizing archaea from surface and anoxic depths of oceanic oxygen minimum zones.

PubMed

Peng, Xuefeng; Jayakumar, Amal; Ward, Bess B

2013-01-01

Ammonia-oxidizing archaea (AOA) have been reported at high abundance in much of the global ocean, even in environments, such as pelagic oxygen minimum zones (OMZs), where conditions seem unlikely to support aerobic ammonium oxidation. Due to the lack of information on any potential alternative metabolism of AOA, the AOA community composition might be expected to differ between oxic and anoxic environments. This hypothesis was tested by evaluating AOA community composition using a functional gene microarray that targets the ammonia monooxygenase gene subunit A (amoA). The relationship between environmental parameters and the biogeography of the Arabian Sea and the Eastern Tropical South Pacific (ETSP) AOA assemblages was investigated using principal component analysis (PCA) and redundancy analysis (RDA). In both the Arabian Sea and the ETSP, AOA communities within the core of the OMZ were not significantly different from those inhabiting the oxygenated surface waters above the OMZ. The AOA communities in the Arabian Sea were significantly different from those in the ETSP. In both oceans, the abundance of archaeal amoA gene in the core of the OMZ was higher than that in the surface waters. Our results indicate that AOA communities are distinguished by their geographic origin. RDA suggested that temperature (higher in the Arabian Sea than in the ETSP) was the main factor that correlated with the differences between the AOA communities. Physicochemical properties that characterized the different environments of the OMZ and surface waters played a less important role, than did geography, in shaping the AOA community composition.

Origin and fate of methane in the Eastern Tropical North Pacific oxygen minimum zone.

PubMed

Chronopoulou, Panagiota-Myrsini; Shelley, Felicity; Pritchard, William J; Maanoja, Susanna T; Trimmer, Mark

2017-06-01

Oxygen minimum zones (OMZs) contain the largest pools of oceanic methane but its origin and fate are poorly understood. High-resolution (<15 m) water column profiles revealed a 300 m thick layer of elevated methane (20-105 nM) in the anoxic core of the largest OMZ, the Eastern Tropical North Pacific. Sediment core incubations identified a clear benthic methane source where the OMZ meets the continental shelf, between 350 and 650 m, with the flux reflecting the concentration of methane in the overlying anoxic water. Further incubations characterised a methanogenic potential in the presence of both porewater sulphate and nitrate of up to 88 nmol g -1 day -1 in the sediment surface layer. In these methane-producing sediments, the majority (85%) of methyl coenzyme M reductase alpha subunit (mcrA) gene sequences clustered with Methanosarcinaceae (⩾96% similarity to Methanococcoides sp.), a family capable of performing non-competitive methanogenesis. Incubations with 13 C-CH 4 showed potential for both aerobic and anaerobic methane oxidation in the waters within and above the OMZ. Both aerobic and anaerobic methane oxidation is corroborated by the presence of particulate methane monooxygenase (pmoA) gene sequences, related to type I methanotrophs and the lineage of Candidatus Methylomirabilis oxyfera, known to perform nitrite-dependent anaerobic methane oxidation (N-DAMO), respectively.

Origin and fate of methane in the Eastern Tropical North Pacific oxygen minimum zone

PubMed Central

Chronopoulou, Panagiota-Myrsini; Shelley, Felicity; Pritchard, William J; Maanoja, Susanna T; Trimmer, Mark

2017-01-01

Oxygen minimum zones (OMZs) contain the largest pools of oceanic methane but its origin and fate are poorly understood. High-resolution (<15 m) water column profiles revealed a 300 m thick layer of elevated methane (20–105 nM) in the anoxic core of the largest OMZ, the Eastern Tropical North Pacific. Sediment core incubations identified a clear benthic methane source where the OMZ meets the continental shelf, between 350 and 650 m, with the flux reflecting the concentration of methane in the overlying anoxic water. Further incubations characterised a methanogenic potential in the presence of both porewater sulphate and nitrate of up to 88 nmol g−1day−1 in the sediment surface layer. In these methane-producing sediments, the majority (85%) of methyl coenzyme M reductase alpha subunit (mcrA) gene sequences clustered with Methanosarcinaceae (⩾96% similarity to Methanococcoides sp.), a family capable of performing non-competitive methanogenesis. Incubations with 13C-CH4 showed potential for both aerobic and anaerobic methane oxidation in the waters within and above the OMZ. Both aerobic and anaerobic methane oxidation is corroborated by the presence of particulate methane monooxygenase (pmoA) gene sequences, related to type I methanotrophs and the lineage of Candidatus Methylomirabilis oxyfera, known to perform nitrite-dependent anaerobic methane oxidation (N-DAMO), respectively. PMID:28244978

Protist communities in a marine oxygen minimum zone off Costa Rica by 454 pyrosequencing

NASA Astrophysics Data System (ADS)

Jing, H.; Rocke, E.; Kong, L.; Xia, X.; Liu, H.; Landry, M. R.

2015-08-01

Marine planktonic protists, including microalgae and protistan grazers, are an important contributor to global primary production and carbon and mineral cycles, however, little is known about their population shifts along the oxic-anoxic gradient in the water column. We used 454 pyrosequencing of the 18S rRNA gene and gene transcripts to study the community composition of whole and active protists throughout a water column in the Costa Rica Dome, where a stable oxygen minimum zone (OMZ) exists at a depth of 400~700 m. A clear shift of protist composition from photosynthetic Dinoflagellates in the surface to potential parasitic Dinoflagellates and Ciliates in the deeper water was revealed along the vertical profile at both rRNA and rDNA levels. Those protist groups recovered only at the rDNA level represent either lysed aggregates sinking from the upper waters or potential hosts for parasitic groups. UPGMA clustering demonstrated that total and active protists in the anoxic core of OMZ (550 m) were distinct from those in other water depths. The reduced community diversity and presence of a parasitic/symbiotic trophic lifestyle in the OMZ, especially the anoxic core, suggests that OMZs can exert a selective pressure on protist communities. Such changes in community structure and a shift in trophic lifestyle could result in a modulation of the microbial loop and associated biogeochemical cycling.

Nitrite oxidation in the Namibian oxygen minimum zone.

PubMed

Füssel, Jessika; Lam, Phyllis; Lavik, Gaute; Jensen, Marlene M; Holtappels, Moritz; Günter, Marcel; Kuypers, Marcel M M

2012-06-01

Nitrite oxidation is the second step of nitrification. It is the primary source of oceanic nitrate, the predominant form of bioavailable nitrogen in the ocean. Despite its obvious importance, nitrite oxidation has rarely been investigated in marine settings. We determined nitrite oxidation rates directly in (15)N-incubation experiments and compared the rates with those of nitrate reduction to nitrite, ammonia oxidation, anammox, denitrification, as well as dissimilatory nitrate/nitrite reduction to ammonium in the Namibian oxygen minimum zone (OMZ). Nitrite oxidation (≤372 nM NO(2)(-) d(-1)) was detected throughout the OMZ even when in situ oxygen concentrations were low to non-detectable. Nitrite oxidation rates often exceeded ammonia oxidation rates, whereas nitrate reduction served as an alternative and significant source of nitrite. Nitrite oxidation and anammox co-occurred in these oxygen-deficient waters, suggesting that nitrite-oxidizing bacteria (NOB) likely compete with anammox bacteria for nitrite when substrate availability became low. Among all of the known NOB genera targeted via catalyzed reporter deposition fluorescence in situ hybridization, only Nitrospina and Nitrococcus were detectable in the Namibian OMZ samples investigated. These NOB were abundant throughout the OMZ and contributed up to ~9% of total microbial community. Our combined results reveal that a considerable fraction of the recently recycled nitrogen or reduced NO(3)(-) was re-oxidized back to NO(3)(-) via nitrite oxidation, instead of being lost from the system through the anammox or denitrification pathways.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Walsh, David A.; Zaikova, Elena; Howes, Charles L.

Oxygen minimum zones (OMZs), also known as oceanic"dead zones", are widespread oceanographic features currently expanding due to global warming and coastal eutrophication. Although inhospitable to metazoan life, OMZs support a thriving but cryptic microbiota whose combined metabolic activity is intimately connected to nutrient and trace gas cycling within the global ocean. Here we report time-resolved metagenomic analyses of a ubiquitous and abundant but uncultivated OMZ microbe (SUP05) closely related to chemoautotrophic gill symbionts of deep-sea clams and mussels. The SUP05 metagenome harbors a versatile repertoire of genes mediating autotrophic carbon assimilation, sulfur-oxidation and nitrate respiration responsive to a wide rangemore » of water column redox states. Thus, SUP05 plays integral roles in shaping nutrient and energy flow within oxygen-deficient oceanic waters via carbon sequestration, sulfide detoxification and biological nitrogen loss with important implications for marine productivity and atmospheric greenhouse control.« less

Nitrous oxide production by nitrification and denitrification in the Eastern Tropical South Pacific oxygen minimum zone

NASA Astrophysics Data System (ADS)

Ji, Qixing; Babbin, Andrew R.; Jayakumar, Amal; Oleynik, Sergey; Ward, Bess B.

2015-12-01

The Eastern Tropical South Pacific oxygen minimum zone (ETSP-OMZ) is a site of intense nitrous oxide (N2O) flux to the atmosphere. This flux results from production of N2O by nitrification and denitrification, but the contribution of the two processes is unknown. The rates of these pathways and their distributions were measured directly using 15N tracers. The highest N2O production rates occurred at the depth of peak N2O concentrations at the oxic-anoxic interface above the oxygen deficient zone (ODZ) because slightly oxygenated waters allowed (1) N2O production from both nitrification and denitrification and (2) higher nitrous oxide production yields from nitrification. Within the ODZ proper (i.e., anoxia), the only source of N2O was denitrification (i.e., nitrite and nitrate reduction), the rates of which were reflected in the abundance of nirS genes (encoding nitrite reductase). Overall, denitrification was the dominant pathway contributing the N2O production in the ETSP-OMZ.

Oxygen Sensitivity of Anammox and Coupled N-Cycle Processes in Oxygen Minimum Zones

PubMed Central

Kalvelage, Tim; Jensen, Marlene M.; Contreras, Sergio; Revsbech, Niels Peter; Lam, Phyllis; Günter, Marcel; LaRoche, Julie; Lavik, Gaute; Kuypers, Marcel M. M.

2011-01-01

Nutrient measurements indicate that 30–50% of the total nitrogen (N) loss in the ocean occurs in oxygen minimum zones (OMZs). This pelagic N-removal takes place within only ∼0.1% of the ocean volume, hence moderate variations in the extent of OMZs due to global warming may have a large impact on the global N-cycle. We examined the effect of oxygen (O2) on anammox, NH3 oxidation and NO3 − reduction in 15N-labeling experiments with varying O2 concentrations (0–25 µmol L−1) in the Namibian and Peruvian OMZs. Our results show that O2 is a major controlling factor for anammox activity in OMZ waters. Based on our O2 assays we estimate the upper limit for anammox to be ∼20 µmol L−1. In contrast, NH3 oxidation to NO2 − and NO3 − reduction to NO2 − as the main NH4 + and NO2 − sources for anammox were only moderately affected by changing O2 concentrations. Intriguingly, aerobic NH3 oxidation was active at non-detectable concentrations of O2, while anaerobic NO3 − reduction was fully active up to at least 25 µmol L−1 O2. Hence, aerobic and anaerobic N-cycle pathways in OMZs can co-occur over a larger range of O2 concentrations than previously assumed. The zone where N-loss can occur is primarily controlled by the O2-sensitivity of anammox itself, and not by any effects of O2 on the tightly coupled pathways of aerobic NH3 oxidation and NO3 − reduction. With anammox bacteria in the marine environment being active at O2 levels ∼20 times higher than those known to inhibit their cultured counterparts, the oceanic volume potentially acting as a N-sink increases tenfold. The predicted expansion of OMZs may enlarge this volume even further. Our study provides the first robust estimates of O2 sensitivities for processes directly and indirectly connected with N-loss. These are essential to assess the effects of ocean de-oxygenation on oceanic N-cycling. PMID:22216239

Proteomic Characterization of Central Pacific Oxygen Minimum Zone Microbial Communities

NASA Astrophysics Data System (ADS)

Saunders, J. K.; McIlvin, M. M.; Moran, D.; Held, N.; Futrelle, J.; Webb, E.; Santoro, A.; Dupont, C.; Saito, M.

2018-05-01

Microbial proteomic profiles are excellent for surveying vast expanses of pelagic ecosystems for links between microbial communities and the biogeochemical cycles they mediate. Data from the ProteOMZ expedition supports the utility of this method.

Microbial Ecological Niche Partitioning Affects N2 gas Production in the Largest Marine Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Fuchsman, C. A.; Penn, J. L.; Devol, A.; Palevsky, H. I.; Deutsch, C. A.; Keil, R.; Ward, B. B.; Rocap, G.

2016-02-01

Up to half of oceanic N2 production occurs in oxygen minimum zones (OMZs). In the Eastern Tropical North Pacific OMZ in April 2012, we measured a nine station coast to open ocean transect of N2 gas in the heart of the ETNP OMZ. Depth profiles of excess N2 gas had dual maxima located at the top of the OMZ and at 300m. An ecosystem biogeochemical model of the ETNP was also found to produce dual maxima at stations with a shallow OMZ. The model indicated that high N2 production rates caused the upper N2 maxima while long water residence time caused the deeper maxima. At a low productivity open ocean station where dual N2 maxima were observed, we obtained a depth profile of metagenomic sequences from both free living and >30 μm fractions to determine which N2 producing microbes were living in these three ecological niches. We use a phylogenetically-aware approach to identify metagenomic sequences by placing them on reference trees, which allows us to utilize them in a semi-quantitative manner. Overall, genes for denitrification (napA, nirS, nirK, qnor, nosZ) were enriched on particles while anammox was free-living. However, separation of genes into phylotypes indicated that the system is more complicated. For example, 4 out of 5 N2O reductase denitrifier phylotypes were actually free-living, while the fifth, most abundant phylotype was particle-attached. In the water column, denitrifier and anammox genes were spatially separated with depth with denitrifiers focused on the top section of the OMZ and with anammox becoming abundant slightly deeper and being more dominant at the deep N2 maxima. Interestingly, different phylotypes of denitrifiers have different depth profiles, implying individual adaptations and niches. The presence of measurable ammonia (>200 nM) at the top 20m of the OMZ along with the very low numbers of anammox bacteria is consistent with recent shoaling of the OMZ at the time of sampling. Thus the spatial separation of denitrifiers and anammox at the top of the OMZ may be a transient event due to differences in growth rate and response time. Additionally, assembly of metagenomic reads and clustering of the resulting contigs by tetranucleotide frequency was used to identify denitrifying bacteria and link together gene phylotypes.

Facets of diazotrophy in the oxygen minimum zone waters off Peru

PubMed Central

Loescher, Carolin R; Großkopf, Tobias; Desai, Falguni D; Gill, Diana; Schunck, Harald; Croot, Peter L; Schlosser, Christian; Neulinger, Sven C; Pinnow, Nicole; Lavik, Gaute; Kuypers, Marcel M M; LaRoche, Julie; Schmitz, Ruth A

2014-01-01

Nitrogen fixation, the biological reduction of dinitrogen gas (N2) to ammonium (NH4+), is quantitatively the most important external source of new nitrogen (N) to the open ocean. Classically, the ecological niche of oceanic N2 fixers (diazotrophs) is ascribed to tropical oligotrophic surface waters, often depleted in fixed N, with a diazotrophic community dominated by cyanobacteria. Although this applies for large areas of the ocean, biogeochemical models and phylogenetic studies suggest that the oceanic diazotrophic niche may be much broader than previously considered, resulting in major implications for the global N-budget. Here, we report on the composition, distribution and abundance of nifH, the functional gene marker for N2 fixation. Our results show the presence of eight clades of diazotrophs in the oxygen minimum zone (OMZ) off Peru. Although proteobacterial clades dominated overall, two clusters affiliated to spirochaeta and archaea were identified. N2 fixation was detected within OMZ waters and was stimulated by the addition of organic carbon sources supporting the view that non-phototrophic diazotrophs were actively fixing dinitrogen. The observed co-occurrence of key functional genes for N2 fixation, nitrification, anammox and denitrification suggests that a close spatial coupling of N-input and N-loss processes exists in the OMZ off Peru. The wide distribution of diazotrophs throughout the water column adds to the emerging view that the habitat of marine diazotrophs can be extended to low oxygen/high nitrate areas. Furthermore, our statistical analysis suggests that NO2− and PO43− are the major factors affecting diazotrophic distribution throughout the OMZ. In view of the predicted increase in ocean deoxygenation resulting from global warming, our findings indicate that the importance of OMZs as niches for N2 fixation may increase in the future. PMID:24813564

Facets of diazotrophy in the oxygen minimum zone waters off Peru.

PubMed

Loescher, Carolin R; Großkopf, Tobias; Desai, Falguni D; Gill, Diana; Schunck, Harald; Croot, Peter L; Schlosser, Christian; Neulinger, Sven C; Pinnow, Nicole; Lavik, Gaute; Kuypers, Marcel M M; LaRoche, Julie; Schmitz, Ruth A

2014-11-01

Nitrogen fixation, the biological reduction of dinitrogen gas (N2) to ammonium (NH4(+)), is quantitatively the most important external source of new nitrogen (N) to the open ocean. Classically, the ecological niche of oceanic N2 fixers (diazotrophs) is ascribed to tropical oligotrophic surface waters, often depleted in fixed N, with a diazotrophic community dominated by cyanobacteria. Although this applies for large areas of the ocean, biogeochemical models and phylogenetic studies suggest that the oceanic diazotrophic niche may be much broader than previously considered, resulting in major implications for the global N-budget. Here, we report on the composition, distribution and abundance of nifH, the functional gene marker for N2 fixation. Our results show the presence of eight clades of diazotrophs in the oxygen minimum zone (OMZ) off Peru. Although proteobacterial clades dominated overall, two clusters affiliated to spirochaeta and archaea were identified. N2 fixation was detected within OMZ waters and was stimulated by the addition of organic carbon sources supporting the view that non-phototrophic diazotrophs were actively fixing dinitrogen. The observed co-occurrence of key functional genes for N2 fixation, nitrification, anammox and denitrification suggests that a close spatial coupling of N-input and N-loss processes exists in the OMZ off Peru. The wide distribution of diazotrophs throughout the water column adds to the emerging view that the habitat of marine diazotrophs can be extended to low oxygen/high nitrate areas. Furthermore, our statistical analysis suggests that NO2(-) and PO4(3-) are the major factors affecting diazotrophic distribution throughout the OMZ. In view of the predicted increase in ocean deoxygenation resulting from global warming, our findings indicate that the importance of OMZs as niches for N2 fixation may increase in the future.

Vertical oxygen minimum zone oscillations since 20 ka in Santa Barbara Basin: A benthic foraminiferal community perspective

NASA Astrophysics Data System (ADS)

Moffitt, Sarah E.; Hill, Tessa M.; Ohkushi, Kenichi; Kennett, James P.; Behl, Richard J.

2014-01-01

we present a history of deoxygenation of upper intermediate waters during the last deglaciation from Santa Barbara Basin (SBB), based on quantitative analyses of benthic foraminiferal assemblages, from a new shallow piston core above basin sill depth (MV0811-15JC, 418 m), and previously described sequences in the deeper basin (MD02-2504, 481 m and MD02-2503, 570 m). We document a 152 m depth transect of benthic foraminiferal assemblages to extract changing community structure (density, diversity, and evenness) and improve paleoenvironmental interpretation of late Quaternary vertical oscillations in the upper boundary of the oxygen minimum zone (OMZ). Close interaction between changes in open margin OMZ and that of the restricted SBB is documented using these quantitative techniques. MV0811-15JC, while being unlaminated, contains strongly hypoxic foraminiferal assemblages (including species Bolivina tumida and Nonionella stella), coeval with preserved sediment laminations in the deeper cores. Last Glacial Maximum (LGM) assemblages across this transect contained oxic fauna and high diversity. At 14.7 ka, glacial termination IA, hypoxic benthic fauna appeared across the transect, recording hypoxic waters (<0.5 ml L-1) < 300 m from the ocean surface. Bølling/Allerød (B/A) assemblages uniquely stand out in the record, exhibited by low density, diversity, and evenness, and taxonomic composition reflecting extreme and stressful hypoxia and methane-rich environments. Younger Dryas assemblages were diverse and composed of oxic fauna, similar to LGM assemblages. Termination IB initiated another deoxygenation shift, followed by OMZ-associated faunal and density patterns. This analysis strengthens the quantitative assessment of oxygen concentrations involved in deglacial OMZ change and reveals the unexpected, remarkable shallowness of OMZ influence during the B/A.

Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hawley, Alyse K.; Brewer, Heather M.; Norbeck, Angela D.

2014-08-05

Oxygen minimum zones (OMZs) are intrinsic water column features arising from respiratory oxygen demand during organic matter degradation in stratified marine waters. Currently OMZs are expanding due to global climate change. This expansion alters marine ecosystem function and the productivity of fisheries due to habitat compression and changes in biogeochemical cycling leading to fixed nitrogen loss and greenhouse gas production. Here we use metaproteomics to chart spatial and temporal patterns of gene expression along defined redox gradients in a seasonally anoxic fjord, Saanich Inlet to better understand microbial community responses to OMZ expansion. The expression of metabolic pathway components formore » nitrification, anaerobic ammonium oxidation (anammox), denitrification and inorganic carbon fixation predominantly co-varied with abundance and distribution patterns of Thaumarchaeota, Nitrospira, Planctomycetes and SUP05/ARCTIC96BD-19 Gammaproteobacteria. Within these groups, pathways mediating inorganic carbon fixation and nitrogen and sulfur transformations were differentially expressed across the redoxcline. Nitrification and inorganic carbon fixation pathways affiliated with Thaumarchaeota dominated dysoxic waters and denitrification, sulfur-oxidation and inorganic carbon fixation pathways affiliated with SUP05 dominated suboxic and anoxic waters. Nitrite-oxidation and anammox pathways affiliated with Nitrospina and Planctomycetes respectively, also exhibited redox partitioning between dysoxic and suboxic waters. The differential expression of these pathways under changing water column redox conditions has quantitative implications for coupled biogeochemical cycling linking different modes of inorganic carbon fixation with distributed nitrogen and sulfur-based energy metabolism extensible to coastal and open ocean OMZs.« less

Decadal to centennial oscillations in the upper and lower boundaries of the San Diego, California margin Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Myhre, S. E.; Hill, T. M.; Frieder, C.; Grupe, B.

2016-02-01

Here we present two new marine sediment archives from the continental margin of San Diego, California, USA, which record decadal to centennial oscillations in the hydrographic structure of the Eastern Pacific Oxygen Minimum Zone (OMZ). The two cores, located at 528 and 1,180 m water depth, record oceanographic history across overlapping timescales. Biotic communities, including Foraminifera, Echinodermata, Brachiopoda, Mollusca and Ostrocoda, were examined in subsurface (>10 cm sediment core depth) samples. Chronologies for both cores were developed with reservoir-corrected 14C dates of mixed planktonic Foraminifera and linearly interpolated sedimentation rates. Sediment ages for the cores range from 400-1,800 years before present. Indices of foraminiferal community density, diversity and evenness are applied as biotic proxies to track the intensification of the continental margin OMZ. Biotic communities at the shallower site reveal multi-decadal to centennial timescales of OMZ intensification, whereas the deeper site exhibits decadal to multi-decadal scales of hydrographic variability. Hypoxia-associated foraminiferal genera Uvigerina and Bolivina were compositionally dominant during intervals of peak foraminiferal density. Invertebrate assemblages often co-occurred across taxa groups, and thereby provide a broad trophic context for interpreting changes in the margin seafloor. Variability in the advection of Pacific Equatorial Water may mechanistically contribute to this described hydrographic variability. This investigation reconstructs historical timescales of OMZ intensification, seafloor ecological variability, and synchrony between open-ocean processes and regional climate.

Nitrite oxidation in the Namibian oxygen minimum zone

PubMed Central

Füssel, Jessika; Lam, Phyllis; Lavik, Gaute; Jensen, Marlene M; Holtappels, Moritz; Günter, Marcel; Kuypers, Marcel MM

2012-01-01

Nitrite oxidation is the second step of nitrification. It is the primary source of oceanic nitrate, the predominant form of bioavailable nitrogen in the ocean. Despite its obvious importance, nitrite oxidation has rarely been investigated in marine settings. We determined nitrite oxidation rates directly in 15N-incubation experiments and compared the rates with those of nitrate reduction to nitrite, ammonia oxidation, anammox, denitrification, as well as dissimilatory nitrate/nitrite reduction to ammonium in the Namibian oxygen minimum zone (OMZ). Nitrite oxidation (⩽372 nM NO2− d−1) was detected throughout the OMZ even when in situ oxygen concentrations were low to non-detectable. Nitrite oxidation rates often exceeded ammonia oxidation rates, whereas nitrate reduction served as an alternative and significant source of nitrite. Nitrite oxidation and anammox co-occurred in these oxygen-deficient waters, suggesting that nitrite-oxidizing bacteria (NOB) likely compete with anammox bacteria for nitrite when substrate availability became low. Among all of the known NOB genera targeted via catalyzed reporter deposition fluorescence in situ hybridization, only Nitrospina and Nitrococcus were detectable in the Namibian OMZ samples investigated. These NOB were abundant throughout the OMZ and contributed up to ∼9% of total microbial community. Our combined results reveal that a considerable fraction of the recently recycled nitrogen or reduced NO3− was re-oxidized back to NO3− via nitrite oxidation, instead of being lost from the system through the anammox or denitrification pathways. PMID:22170426

Water column biogeochemistry of oxygen minimum zones in the eastern tropical North Atlantic and eastern tropical South Pacific Oceans

NASA Astrophysics Data System (ADS)

Löscher, C. R.; Bange, H. W.; Schmitz, R. A.; Callbeck, C. M.; Engel, A.; Hauss, H.; Kanzow, T.; Kiko, R.; Lavik, G.; Loginova, A.; Melzner, F.; Neulinger, S. C.; Pahlow, M.; Riebesell, U.; Schunck, H.; Thomsen, S.; Wagner, H.

2015-03-01

Recent modeling results suggest that oceanic oxygen levels will decrease significantly over the next decades to centuries in response to climate change and altered ocean circulation. Hence the future ocean may experience major shifts in nutrient cycling triggered by the expansion and intensification of tropical oxygen minimum zones (OMZs). There are numerous feedbacks between oxygen concentrations, nutrient cycling and biological productivity; however, existing knowledge is insufficient to understand physical, chemical and biological interactions in order to adequately assess past and potential future changes. We investigated the pelagic biogeochemistry of OMZs in the eastern tropical North Atlantic and eastern tropical South Pacific during a series of cruise expeditions and mesocosm studies. The following summarizes the current state of research on the influence of low environmental oxygen conditions on marine biota, viruses, organic matter formation and remineralization with a particular focus on the nitrogen cycle in OMZ regions. The impact of sulfidic events on water column biogeochemistry, originating from a specific microbial community capable of highly efficient carbon fixation, nitrogen turnover and N2O production is further discussed. Based on our findings, an important role of sinking particulate organic matter in controlling the nutrient stochiometry of the water column is suggested. These particles can enhance degradation processes in OMZ waters by acting as microniches, with sharp gradients enabling different processes to happen in close vicinity, thus altering the interpretation of oxic and anoxic environments.

Size-fractionated diversity of eukaryotic microbial communities in the Eastern Tropical North Pacific oxygen minimum zone.

PubMed

Duret, Manon T; Pachiadaki, Maria G; Stewart, Frank J; Sarode, Neha; Christaki, Urania; Monchy, Sébastien; Srivastava, Ankita; Edgcomb, Virginia P

2015-05-01

Oxygen minimum zones (OMZs) caused by water column stratification appear to expand in parts of the world's ocean, with consequences for marine biogeochemical cycles. OMZ formation is often fueled by high surface primary production, and sinking organic particles can be hotspots of interactions and activity within microbial communities. This study investigated the diversity of OMZ protist communities in two biomass size fractions (>30 and 30-1.6 μm filters) from the world's largest permanent OMZ in the Eastern Tropical North Pacific. Diversity was quantified via Illumina MiSeq sequencing of V4 region of 18S SSU rRNA genes in samples spanning oxygen gradients at two stations. Alveolata and Rhizaria dominated the two size fractions at both sites along the oxygen gradient. Community composition at finer taxonomic levels was partially shaped by oxygen concentration, as communities associated with versus anoxic waters shared only ∼32% of operational taxonomic unit (OTU) (97% sequence identity) composition. Overall, only 9.7% of total OTUs were recovered at both stations and under all oxygen conditions sampled, implying structuring of the eukaryotic community in this area. Size-fractionated communities exhibited different taxonomical features (e.g. Syndiniales Group I in the 1.6-30 μm fraction) that could be explained by the microniches created on the surface-originated sinking particles. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Persistent millennial-scale link between Greenland climate and northern Pacific Oxygen Minimum Zone under interglacial conditions

NASA Astrophysics Data System (ADS)

Cartapanis, O.; Tachikawa, K.; Romero, O. E.; Bard, E.

2014-02-01

The intensity and/or extent of the northeastern Pacific Oxygen Minimum Zone (OMZ) varied in-phase with the Northern Hemisphere high latitude climate on millennial timescales during the last glacial period, indicating the occurrence of atmospheric and oceanic connections under glacial conditions. While millennial variability was reported for both the Greenland and the northern Atlantic Ocean during the last interglacial period, the climatic connections with the northeastern Pacific OMZ has not yet been observed under warm interglacial conditions. Here we present a new geochemical dataset, spanning the past 120 ka, for major components (terrigenous fraction, marine organic matter, biogenic opal, and carbonates) generated by X-ray fluorescence scanning alongside with biological productivity and redox sensitive trace element content (Mo, Ni, Cd) of sediment core MD02-2508 at 23° N, retrieved from the northern limit of the modern OMZ. Based on elemental ratios Si / Ti (proxy for opal), Cd / Al and Ni / Al, we suggest that biological productivity was high during the last interglacial (MIS5). Highly resolved opal reconstruction presents millennial variability corresponding to all the Dansgaard-Oeschger interstadial events over the last interglacial, while the Mo / Al ratio indicates reduced oxygenation during these events. Extremely high opal content during warm interstadials suggests high diatom productivity. Despite the different climatic and oceanic background between glacial and interglacial periods, rapid variability in the northeastern Pacific OMZ seems to be tightly related to Northern Hemisphere high latitude climate via atmospheric and possibly oceanic processes.

Microbial metatranscriptomics in a permanent marine oxygen minimum zone.

PubMed

Stewart, Frank J; Ulloa, Osvaldo; DeLong, Edward F

2012-01-01

Simultaneous characterization of taxonomic composition, metabolic gene content and gene expression in marine oxygen minimum zones (OMZs) has potential to broaden perspectives on the microbial and biogeochemical dynamics in these environments. Here, we present a metatranscriptomic survey of microbial community metabolism in the Eastern Tropical South Pacific OMZ off northern Chile. Community RNA was sampled in late austral autumn from four depths (50, 85, 110, 200 m) extending across the oxycline and into the upper OMZ. Shotgun pyrosequencing of cDNA yielded 180,000 to 550,000 transcript sequences per depth. Based on functional gene representation, transcriptome samples clustered apart from corresponding metagenome samples from the same depth, highlighting the discrepancies between metabolic potential and actual transcription. BLAST-based characterizations of non-ribosomal RNA sequences revealed a dominance of genes involved with both oxidative (nitrification) and reductive (anammox, denitrification) components of the marine nitrogen cycle. Using annotations of protein-coding genes as proxies for taxonomic affiliation, we observed depth-specific changes in gene expression by key functional taxonomic groups. Notably, transcripts most closely matching the genome of the ammonia-oxidizing archaeon Nitrosopumilus maritimus dominated the transcriptome in the upper three depths, representing one in five protein-coding transcripts at 85 m. In contrast, transcripts matching the anammox bacterium Kuenenia stuttgartiensis dominated at the core of the OMZ (200 m; 1 in 12 protein-coding transcripts). The distribution of N. maritimus-like transcripts paralleled that of transcripts matching ammonia monooxygenase genes, which, despite being represented by both bacterial and archaeal sequences in the community DNA, were dominated (> 99%) by archaeal sequences in the RNA, suggesting a substantial role for archaeal nitrification in the upper OMZ. These data, as well as those describing other key OMZ metabolic processes (e.g. sulfur oxidation), highlight gene-specific expression patterns in the context of the entire community transcriptome, as well as identify key functional groups for taxon-specific genomic profiling. © 2011 Society for Applied Microbiology and Blackwell Publishing Ltd.

Trophic ecology and vertical patterns of carbon and nitrogen stable isotopes in zooplankton from oxygen minimum zone regions

NASA Astrophysics Data System (ADS)

Williams, Rebecca L.; Wakeham, Stuart; McKinney, Rick; Wishner, Karen F.

2014-08-01

The unique physical and biogeochemical characteristics of oxygen minimum zones (OMZs) influence plankton ecology, including zooplankton trophic webs. Using carbon and nitrogen stable isotopes, this study examined zooplankton trophic webs in the Eastern Tropical North Pacific (ETNP) OMZ. δ13C values were used to indicate zooplankton food sources, and δ15N values were used to indicate zooplankton trophic position and nitrogen cycle pathways. Vertically stratified MOCNESS net tows collected zooplankton from 0 to 1000 m at two stations along a north-south transect in the ETNP during 2007 and 2008, the Tehuantepec Bowl and the Costa Rica Dome. Zooplankton samples were separated into four size fractions for stable isotope analyses. Particulate organic matter (POM), assumed to represent a primary food source for zooplankton, was collected with McLane large volume in situ pumps. The isotopic composition and trophic ecology of the ETNP zooplankton community had distinct spatial and vertical patterns influenced by OMZ structure. The most pronounced vertical isotope gradients occurred near the upper and lower OMZ oxyclines. Material with lower δ13C values was apparently produced in the upper oxycline, possibly by chemoautotrophic microbes, and was subsequently consumed by zooplankton. Between-station differences in δ15N values suggested that different nitrogen cycle processes were dominant at the two locations, which influenced the isotopic characteristics of the zooplankton community. A strong depth gradient in zooplankton δ15N values in the lower oxycline suggested an increase in trophic cycling just below the core of the OMZ. Shallow POM (0-110 m) was likely the most important food source for mixed layer, upper oxycline, and OMZ core zooplankton, while deep POM was an important food source for most lower oxycline zooplankton (except for samples dominated by the seasonally migrating copepod Eucalanus inermis). There was no consistent isotopic progression among the four zooplankton size classes for these bulk mixed assemblage samples, implying overlapping trophic webs within the total size range considered.

Giant Hydrogen Sulfide Plume in the Oxygen Minimum Zone off Peru Supports Chemolithoautotrophy

PubMed Central

Großkopf, Tobias; Kalvelage, Tim; Löscher, Carolin R.; Paulmier, Aurélien; Contreras, Sergio; Siegel, Herbert; Holtappels, Moritz; Rosenstiel, Philip; Schilhabel, Markus B.; Graco, Michelle; Schmitz, Ruth A.; Kuypers, Marcel M. M.; LaRoche, Julie

2013-01-01

In Eastern Boundary Upwelling Systems nutrient-rich waters are transported to the ocean surface, fuelling high photoautotrophic primary production. Subsequent heterotrophic decomposition of the produced biomass increases the oxygen-depletion at intermediate water depths, which can result in the formation of oxygen minimum zones (OMZ). OMZs can sporadically accumulate hydrogen sulfide (H2S), which is toxic to most multicellular organisms and has been implicated in massive fish kills. During a cruise to the OMZ off Peru in January 2009 we found a sulfidic plume in continental shelf waters, covering an area >5500 km2, which contained ∼2.2×104 tons of H2S. This was the first time that H2S was measured in the Peruvian OMZ and with ∼440 km3 the largest plume ever reported for oceanic waters. We assessed the phylogenetic and functional diversity of the inhabiting microbial community by high-throughput sequencing of DNA and RNA, while its metabolic activity was determined with rate measurements of carbon fixation and nitrogen transformation processes. The waters were dominated by several distinct γ-, δ- and ε-proteobacterial taxa associated with either sulfur oxidation or sulfate reduction. Our results suggest that these chemolithoautotrophic bacteria utilized several oxidants (oxygen, nitrate, nitrite, nitric oxide and nitrous oxide) to detoxify the sulfidic waters well below the oxic surface. The chemolithoautotrophic activity at our sampling site led to high rates of dark carbon fixation. Assuming that these chemolithoautotrophic rates were maintained throughout the sulfidic waters, they could be representing as much as ∼30% of the photoautotrophic carbon fixation. Postulated changes such as eutrophication and global warming, which lead to an expansion and intensification of OMZs, might also increase the frequency of sulfidic waters. We suggest that the chemolithoautotrophically fixed carbon may be involved in a negative feedback loop that could fuel further sulfate reduction and potentially stabilize the sulfidic OMZ waters. PMID:23990875

Giant hydrogen sulfide plume in the oxygen minimum zone off Peru supports chemolithoautotrophy.

PubMed

Schunck, Harald; Lavik, Gaute; Desai, Dhwani K; Großkopf, Tobias; Kalvelage, Tim; Löscher, Carolin R; Paulmier, Aurélien; Contreras, Sergio; Siegel, Herbert; Holtappels, Moritz; Rosenstiel, Philip; Schilhabel, Markus B; Graco, Michelle; Schmitz, Ruth A; Kuypers, Marcel M M; Laroche, Julie

2013-01-01

In Eastern Boundary Upwelling Systems nutrient-rich waters are transported to the ocean surface, fuelling high photoautotrophic primary production. Subsequent heterotrophic decomposition of the produced biomass increases the oxygen-depletion at intermediate water depths, which can result in the formation of oxygen minimum zones (OMZ). OMZs can sporadically accumulate hydrogen sulfide (H2S), which is toxic to most multicellular organisms and has been implicated in massive fish kills. During a cruise to the OMZ off Peru in January 2009 we found a sulfidic plume in continental shelf waters, covering an area >5500 km(2), which contained ∼2.2×10(4) tons of H2S. This was the first time that H2S was measured in the Peruvian OMZ and with ∼440 km(3) the largest plume ever reported for oceanic waters. We assessed the phylogenetic and functional diversity of the inhabiting microbial community by high-throughput sequencing of DNA and RNA, while its metabolic activity was determined with rate measurements of carbon fixation and nitrogen transformation processes. The waters were dominated by several distinct γ-, δ- and ε-proteobacterial taxa associated with either sulfur oxidation or sulfate reduction. Our results suggest that these chemolithoautotrophic bacteria utilized several oxidants (oxygen, nitrate, nitrite, nitric oxide and nitrous oxide) to detoxify the sulfidic waters well below the oxic surface. The chemolithoautotrophic activity at our sampling site led to high rates of dark carbon fixation. Assuming that these chemolithoautotrophic rates were maintained throughout the sulfidic waters, they could be representing as much as ∼30% of the photoautotrophic carbon fixation. Postulated changes such as eutrophication and global warming, which lead to an expansion and intensification of OMZs, might also increase the frequency of sulfidic waters. We suggest that the chemolithoautotrophically fixed carbon may be involved in a negative feedback loop that could fuel further sulfate reduction and potentially stabilize the sulfidic OMZ waters.

Modelling nitrite dynamics and associated feedback processes in the Benguela oxygen minimum zone

NASA Astrophysics Data System (ADS)

Mashifane, T. B.; Vichi, M.; Waldron, H. N.; Machu, E.; Garçonc, V.

2016-08-01

Understanding nitrite dynamics in oxygen minimum zones (OMZs) is a challenge as it represents an intermediary nitrogen species with a short turnover time. Nitrite is also reduced to nitrogen in OMZs, preventing its accumulation. This creates difficulties in detecting nitrite with colorimetric methods as concentrations may occur below detection limits in some regions. Nitrite concentrations are key to understanding intermediate nitrogen processes and their implication for nitrogen loss in OMZs. A coupled physical-biogeochemical model is applied in the Benguela OMZ to study nitrite dynamics and its associated feedback processes. Simulated results show occurrence of primary and secondary nitrite maxima in the Benguela shelf waters. The primary nitrite maxima in the Benguela are attributed to nitrification and nitrate assimilation as they occur in association with the nitracline. Secondary nitrite maxima accumulate in the Angola-Benguela Front (ABF) OMZ and are attributed to denitrification. The secondary nitrite maxima are consumed by anaerobic ammonium oxidation (anammox) off Walvis Bay. Nitrite maxima are restricted to the shelf off Walvis Bay and advected offshore in the ABF region. Interchanges between the poleward South Atlantic Central Water (SACW) and the equatorward, well-aerated Eastern South Atlantic Central Water (ESACW) drive the seasonality of nitrogen processes in the Benguela. Subsequent nitrite reduction in the Benguela OMZ leads to nitrous oxide production, with high concentrations occurring in the ABF region as a result of nitrification and denitrification. Off Walvis Bay, nitrous oxide production is low since nitrite is consumed by anammox. Nitrous oxide production occurs in thermocline, intermediate and deeper water masses in the ABF region. High N fluxes in the Benguela are attributed to nitrification as compared to anammox and denitrification. Results from this study demonstrate the role of intermediate nitrogen species in nitrogen feedback processes in the Benguela and can be applied in other regions.

Isopycnal diffusivity in the tropical North Atlantic oxygen minimum zone

NASA Astrophysics Data System (ADS)

Köllner, Manuela; Visbeck, Martin; Tanhua, Toste; Fischer, Tim

2017-04-01

Isopycnal diffusivity plays an important role in the ventilation of the Eastern Tropical North Atlantic (ETNA) Oxygen Minimum Zone (OMZ). Lateral tracer transport is described by isopycnal diffusivity and mean advection of the tracer (e.g. oxygen), together they account for up to 70% of the oxygen supply for the OMZ. One of the big challenges is to separate diffusivity from advection. Isopycnal diffusivity was estimated to be Ky=(500 ± 200) m2 s-1 and Kx=(1200 ± 600) m2 s-1 by Banyte et. al (2013) from a Tracer Release Experiment (TRE). Hahn et al. (2014) estimated a meridional eddy diffusivity of 1350 m2 s-1 at 100 m depth decaying to less than 300 m2 s-1 below 800 m depth from repeated ship sections of CTD and ADCP data in addition with hydrographic mooring data. Uncertainties of the estimated diffusivities were still large, thus the Oxygen Supply Tracer Release Experiment (OSTRE) was set up to estimate isopycnal diffusivity in the OMZ using a newly developed sampling strategy of a control volume. The tracer was released in 2012 in the core of the OMZ at approximately 410 m depth and mapped after 6, 15 and 29 months in a regular grid. In addition to the calculation of tracer column integrals from vertical tracer profiles a new sampling method was invented and tested during two of the mapping cruises. The mean eddy diffusivity during OSTRE was found to be about (300 ± 130) m2 s-1. Additionally, the tracer has been advected further to the east and west by zonal jets. We compare different analysis methods to estimate isopycnal diffusivity from tracer spreading and show the advantage of the control volume surveys and control box approach. From the control box approach we are estimating the strength of the zonal jets within the OMZ core integrated over the TRE time period. References: Banyte, D., Visbeck, M., Tanhua, T., Fischer, T., Krahmann, G.,Karstensen, J., 2013. Lateral Diffusivity from Tracer Release Experiments in the Tropical North Atlantic Thermocline. Journal of Geophysical Research 118. Hahn, J., Brandt, P., Greatbatch, R., Krahmann, G., Körtzinger, A., 2014. Oxygen variance and meridional oxygen supply in the Tropical North East Atlantic oxygen minimum zone. Climate Dynamics 43, 2999-3024.

Environmental Genomic Analysis of Stratified Microbial Communities and Climate Active Gases in the Subarctic Pacific Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Wright, J.; Hallam, S.; Merzouk, A.; Tortell, P.

2008-12-01

Oxygen minimum zones (OMZs) are areas of low dissolved oxygen concentrations that play a major role in biogeochemical cycling within the world's oceans. They are major sinks for nitrogen and sources for the greenhouse gases carbon dioxide and nitrous oxide. Therefore, microbial mediated biological activity associated with these systems directly impacts ocean productivity and global climate balance. There is increasing evidence that ocean warming trends will decrease dissolved oxygen concentrations within the coastal and interior regions of the subarctic Pacific, causing an expansion of the hypoxic boundary layer. This expansion will have a direct effect on coastal benthic ecosystems and the productivity of marine fisheries due to habitat loss and changes in nutrient cycling. In order to understand the potential implications of these transitions, we are performing environmental genomic analyses of indigenous microbial communities found in coastal and open ocean OMZs in the subarctic Pacific Ocean in relation to dissolved gas and nutrient concentrations. In addition to identifying and describing the key microbial players and biochemical pathways contributing to carbon, nitrogen and sulfur metabolism within the subarctic Pacific Ocean, this work provides a solid comparative genomic foundation for understanding the biogeochemical processes at work in marine OMZs around the globe.

Sedimentary pigments and nature of organic matter within the oxygen minimum zone (OMZ) of the Eastern Arabian Sea (Indian margin)

NASA Astrophysics Data System (ADS)

Rasiq, K. T.; Kurian, S.; Karapurkar, S. G.; Naqvi, S. W. A.

2016-07-01

Sedimentary pigments, carbon and nitrogen content and their stable isotopes were studied in three short cores collected from the oxygen minimum zone (OMZ) of the Eastern Arabian Sea (EAS). Nine pigments including chlorophyll a and their degradation products were quantified using High Performance Liquid Chromatography (HPLC). Astaxanthin followed by canthaxanthin and zeaxanthin were the major carotenoids detected in these cores. The total pigment concentration was high in the core collected from 500 m water depth (6.5 μgg-1) followed by 800 m (1.7 μgg-1) and 1100 m (1.1 μgg-1) depths respectively. The organic carbon did not have considerable control on sedimentary pigments preservation. Pigment degradation was comparatively high in the core collected from the 800 m site which depended not only the bottom dissolved oxygen levels, but also on the faunal activity. As reported earlier, the bottom water dissolved oxygen and presence of fauna have good control on the organic carbon accumulation and preservation at Indian margin OMZ sediments. The C/N ratios and δ13C values for all the cores conclude the marine origin of organic matter and δ15N profiles revealed signature of upwelling associated denitrification within the water column.

Vertical zonation and distributions of calanoid copepods through the lower oxycline of the Arabian Sea oxygen minimum zone

NASA Astrophysics Data System (ADS)

Wishner, Karen F.; Gelfman, Celia; Gowing, Marcia M.; Outram, Dawn M.; Rapien, Mary; Williams, Rebecca L.

2008-08-01

This paper provides the first comprehensive analysis of calanoid copepod vertical zonation and community structure at midwater depths (300-1000 m) through the lower oxygen gradient (oxycline) (0.02 to ∼0.3 ml/L) of an oxygen minimum zone (OMZ). Feeding ecology was also analyzed. Zooplankton were collected with a double 1 m 2 MOCNESS plankton net in day and night vertically-stratified oblique tows from 1000 m to the surface at six stations during four seasons as part of the 1995 US Joint Global Ocean Flux Study (JGOFS) Arabian Sea project. The geographic comparison between a eutrophic more oxygenated onshore station and an offshore station with a strong OMZ served as a natural experiment to elucidate the influence of depth, oxygen concentration, season, food resources, and predators on the copepod distributions. Copepod species and species assemblages of the Arabian Sea OMZ differed in their spatial and vertical distributions relative to environmental and ecological characteristics of the water column and region. The extent and intensity of the oxycline at the lower boundary of the OMZ, and its spatial and temporal variability over the year of sampling, was an important factor affecting distributional patterns. Calanoid copepod species showed vertical zonation through the lower OMZ oxycline. Clustering analyses defined sample groups with similar copepod assemblages and species groups with similar distributions. No apparent diel vertical migration for either calanoid or non-calanoid copepods at these midwater depths was observed, but some species had age-related differences in vertical distributions. Subzones of the OMZ, termed the OMZ Core, the Lower Oxycline, and the Sub-Oxycline, had different copepod communities and ecological interactions. Major distributional and ecological changes were associated with surprisingly small oxygen gradients at low oxygen concentrations. The calanoid copepod community was most diverse in the most oxygenated environments (oxygen >0.14 ml/L), but the rank order of abundance of species was similar in the Lower Oxycline and Sub-Oxycline. Some species were absent or much scarcer in the OMZ Core. Two copepod species common in the Lower Oxycline were primarily detritivorous but showed dietary differences suggesting feeding specialization. The copepod Spinocalanus antarcticus fed primarily on components of the vertical particulate flux and suspended material, a less versatile diet than the co-occurring copepod Lucicutia grandis. Vertical zonation of copepod species through the lower OMZ oxycline is probably a complex interplay between physiological limitation by low oxygen, potential predator control, and potential food resources. Pelagic OMZ and oxycline communities, and their ecological interactions in the water column and with the benthos, may become even more widespread and significant in the future ocean, if global warming increases the extent and intensity of OMZs as predicted.

Centennial changes in North Pacific anoxia linked to tropical trade winds

USGS Publications Warehouse

Deutsch, Curtis; Berelson, William; Thunell, Robert; Weber, Thomas; Tems, Caitlin; McManus, James; Crusius, John; Ito, Taka; Baumgartner, Timothy; Ferreira, Vicente; Mey, Jacob; van Geen, Alexander

2014-01-01

Climate warming is expected to reduce oxygen (O2) supply to the ocean and expand its oxygen minimum zones (OMZs). We reconstructed variations in the extent of North Pacific anoxia since 1850 using a geochemical proxy for denitrification (δ15N) from multiple sediment cores. Increasing δ15N since ~1990 records an expansion of anoxia, consistent with observed O2 trends. However, this was preceded by a longer declining δ15N trend that implies that the anoxic zone was shrinking for most of the 20th century. Both periods can be explained by changes in winds over the tropical Pacific that drive upwelling, biological productivity, and O2 demand within the OMZ. If equatorial Pacific winds resume their predicted weakening trend, the ocean’s largest anoxic zone will contract despite a global O2 decline.

Dynamics of tropical oxygen minium zones (OMZ): The role of vertical mixing and eddy stirring in ventilating the OMZ in the tropical Atlantic

NASA Astrophysics Data System (ADS)

Visbeck, M.; Banyte, D.; Brandt, P.; Dengler, M.; Fischer, T.; Karstensen, J.; Krahmann, G.; Tanhua, T. S.; Stramma, L.

2013-12-01

Equatorial Dynamics provide an essential influence on the ventilation pathways of well oxygenated surface water on their route to tropical oxygen minimum zones (OMZ). The large scale wind driven circulation shield OMZs from the direct ventilation pathways. They are located in the so called ';shadow zones' equator ward of the subtropical gyres. From what is known most of the oxygen is supplied via pathways from the western boundary modulated by the complex zonal equatorial current system and marginally by vertical mixing. What was less clear is which of the possible pathways are most effective in transporting dissolved oxygen towards the OMZ. A collaborative research program focused on the dynamics of oxygen minimum zones, called SFB754 "Climate - Biogeochemistry Interactions in the Tropical Ocean", allowed us to conduct two ocean tracer release experiments to investigate the vertical and horizontal mixing rates and associated oxygen transports. Specifically we report on the first deliberate tracer release experiment (GUTRE, Guinea Upwelling Tracer Release Experiment) in the tropical northeast Atlantic carried out in order to determine the diapycnal diffusivity coefficient in the upper layer of the OMZ. A tracer (CF3SF5) was injected in spring of 2008 and subsequently measured during three designated tracer survey cruises until the end of 2010. We found that, generally, the diffusivity is larger than expected for low latitudes and similar in magnitude to what has previously been experimentally determined in the Canary Basin. When combining the tracer study with estimates of diapycnal mixing based on microstructure profiling and a newly developed method using ship board ADCPs we were able to compute the vertical oxygen flux and its divergence for the OMZ. To our surprise, the vertical flux of oxygen by diapycnal mixing provides about 30% of the total ventilation. The estimate was derived from the simple advection-diffusion model taking into account moored and ship based velocity observations of the equatorial current systems along 23°W in the tropical Atlantic. However, the advective pathways are less certain and possibly more variable. Firstly, the strength of lateral eddy stirring and the role in oxygen transport is less well known, and is the focus of the ongoing second tracer release experiment (OSTRE, Oxygen Supply Tracer Release Experiment). Secondly, the analysis of historical data from the equatorial regime suggests that the observed decline in dissolved oxygen in the tropical North Atlantic might in part be a consequence of reduced horizontal ventilation by equatorial intermediate current systems. The uncertainty of the long-term variability of the circulation in the equatorial systems and additional uncertainty in the biogeochemical consumption rates provide a challenge for estimates of the future of the OMZ regimes. Model prediction of future oxygen changes depend on the models ability to reproduce the observed oxygen ventilation pathways and processes, which might limit the prediction's accuracy.

Microbial oceanography of anoxic oxygen minimum zones.

PubMed

Ulloa, Osvaldo; Canfield, Donald E; DeLong, Edward F; Letelier, Ricardo M; Stewart, Frank J

2012-10-02

Vast expanses of oxygen-deficient and nitrite-rich water define the major oxygen minimum zones (OMZs) of the global ocean. They support diverse microbial communities that influence the nitrogen economy of the oceans, contributing to major losses of fixed nitrogen as dinitrogen (N(2)) and nitrous oxide (N(2)O) gases. Anaerobic microbial processes, including the two pathways of N(2) production, denitrification and anaerobic ammonium oxidation, are oxygen-sensitive, with some occurring only under strictly anoxic conditions. The detection limit of the usual method (Winkler titrations) for measuring dissolved oxygen in seawater, however, is much too high to distinguish low oxygen conditions from true anoxia. However, new analytical technologies are revealing vanishingly low oxygen concentrations in nitrite-rich OMZs, indicating that these OMZs are essentially anoxic marine zones (AMZs). Autonomous monitoring platforms also reveal previously unrecognized episodic intrusions of oxygen into the AMZ core, which could periodically support aerobic metabolisms in a typically anoxic environment. Although nitrogen cycling is considered to dominate the microbial ecology and biogeochemistry of AMZs, recent environmental genomics and geochemical studies show the presence of other relevant processes, particularly those associated with the sulfur and carbon cycles. AMZs correspond to an intermediate state between two "end points" represented by fully oxic systems and fully sulfidic systems. Modern and ancient AMZs and sulfidic basins are chemically and functionally related. Global change is affecting the magnitude of biogeochemical fluxes and ocean chemical inventories, leading to shifts in AMZ chemistry and biology that are likely to continue well into the future.

Microbial oceanography of anoxic oxygen minimum zones

PubMed Central

Ulloa, Osvaldo; Canfield, Donald E.; DeLong, Edward F.; Letelier, Ricardo M.; Stewart, Frank J.

2012-01-01

Vast expanses of oxygen-deficient and nitrite-rich water define the major oxygen minimum zones (OMZs) of the global ocean. They support diverse microbial communities that influence the nitrogen economy of the oceans, contributing to major losses of fixed nitrogen as dinitrogen (N2) and nitrous oxide (N2O) gases. Anaerobic microbial processes, including the two pathways of N2 production, denitrification and anaerobic ammonium oxidation, are oxygen-sensitive, with some occurring only under strictly anoxic conditions. The detection limit of the usual method (Winkler titrations) for measuring dissolved oxygen in seawater, however, is much too high to distinguish low oxygen conditions from true anoxia. However, new analytical technologies are revealing vanishingly low oxygen concentrations in nitrite-rich OMZs, indicating that these OMZs are essentially anoxic marine zones (AMZs). Autonomous monitoring platforms also reveal previously unrecognized episodic intrusions of oxygen into the AMZ core, which could periodically support aerobic metabolisms in a typically anoxic environment. Although nitrogen cycling is considered to dominate the microbial ecology and biogeochemistry of AMZs, recent environmental genomics and geochemical studies show the presence of other relevant processes, particularly those associated with the sulfur and carbon cycles. AMZs correspond to an intermediate state between two “end points” represented by fully oxic systems and fully sulfidic systems. Modern and ancient AMZs and sulfidic basins are chemically and functionally related. Global change is affecting the magnitude of biogeochemical fluxes and ocean chemical inventories, leading to shifts in AMZ chemistry and biology that are likely to continue well into the future. PMID:22967509

Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone

PubMed Central

Hawley, Alyse K.; Katsev, Sergei; Torres-Beltran, Monica; Bhatia, Maya P.; Kheirandish, Sam; Michiels, Céline C.; Capelle, David; Lavik, Gaute; Doebeli, Michael; Crowe, Sean A.; Hallam, Steven J.

2016-01-01

Microorganisms are the most abundant lifeform on Earth, mediating global fluxes of matter and energy. Over the past decade, high-throughput molecular techniques generating multiomic sequence information (DNA, mRNA, and protein) have transformed our perception of this microcosmos, conceptually linking microorganisms at the individual, population, and community levels to a wide range of ecosystem functions and services. Here, we develop a biogeochemical model that describes metabolic coupling along the redox gradient in Saanich Inlet—a seasonally anoxic fjord with biogeochemistry analogous to oxygen minimum zones (OMZs). The model reproduces measured biogeochemical process rates as well as DNA, mRNA, and protein concentration profiles across the redox gradient. Simulations make predictions about the role of ubiquitous OMZ microorganisms in mediating carbon, nitrogen, and sulfur cycling. For example, nitrite “leakage” during incomplete sulfide-driven denitrification by SUP05 Gammaproteobacteria is predicted to support inorganic carbon fixation and intense nitrogen loss via anaerobic ammonium oxidation. This coupling creates a metabolic niche for nitrous oxide reduction that completes denitrification by currently unidentified community members. These results quantitatively improve previous conceptual models describing microbial metabolic networks in OMZs. Beyond OMZ-specific predictions, model results indicate that geochemical fluxes are robust indicators of microbial community structure and reciprocally, that gene abundances and geochemical conditions largely determine gene expression patterns. The integration of real observational data, including geochemical profiles and process rate measurements as well as metagenomic, metatranscriptomic and metaproteomic sequence data, into a biogeochemical model, as shown here, enables holistic insight into the microbial metabolic network driving nutrient and energy flow at ecosystem scales. PMID:27655888

Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone.

PubMed

Louca, Stilianos; Hawley, Alyse K; Katsev, Sergei; Torres-Beltran, Monica; Bhatia, Maya P; Kheirandish, Sam; Michiels, Céline C; Capelle, David; Lavik, Gaute; Doebeli, Michael; Crowe, Sean A; Hallam, Steven J

2016-10-04

Microorganisms are the most abundant lifeform on Earth, mediating global fluxes of matter and energy. Over the past decade, high-throughput molecular techniques generating multiomic sequence information (DNA, mRNA, and protein) have transformed our perception of this microcosmos, conceptually linking microorganisms at the individual, population, and community levels to a wide range of ecosystem functions and services. Here, we develop a biogeochemical model that describes metabolic coupling along the redox gradient in Saanich Inlet-a seasonally anoxic fjord with biogeochemistry analogous to oxygen minimum zones (OMZs). The model reproduces measured biogeochemical process rates as well as DNA, mRNA, and protein concentration profiles across the redox gradient. Simulations make predictions about the role of ubiquitous OMZ microorganisms in mediating carbon, nitrogen, and sulfur cycling. For example, nitrite "leakage" during incomplete sulfide-driven denitrification by SUP05 Gammaproteobacteria is predicted to support inorganic carbon fixation and intense nitrogen loss via anaerobic ammonium oxidation. This coupling creates a metabolic niche for nitrous oxide reduction that completes denitrification by currently unidentified community members. These results quantitatively improve previous conceptual models describing microbial metabolic networks in OMZs. Beyond OMZ-specific predictions, model results indicate that geochemical fluxes are robust indicators of microbial community structure and reciprocally, that gene abundances and geochemical conditions largely determine gene expression patterns. The integration of real observational data, including geochemical profiles and process rate measurements as well as metagenomic, metatranscriptomic and metaproteomic sequence data, into a biogeochemical model, as shown here, enables holistic insight into the microbial metabolic network driving nutrient and energy flow at ecosystem scales.

Ammonium excretion and oxygen respiration of tropical copepods and euphausiids exposed to oxygen minimum zone conditions

NASA Astrophysics Data System (ADS)

Kiko, R.; Hauss, H.; Buchholz, F.; Melzner, F.

2015-10-01

Calanoid copepods and euphausiids are key components of marine zooplankton communities worldwide. Most euphausiids and several copepod species perform diel vertical migrations (DVMs) that contribute to the export of particulate and dissolved matter to midwater depths. In vast areas of the global ocean, and in particular in the eastern tropical Atlantic and Pacific, the daytime distribution depth of many migrating organisms corresponds to the core of the oxygen minimum zone (OMZ). At depth, the animals experience reduced temperature and oxygen partial pressure (pO2) and an increased carbon dioxide partial pressure (pCO2) compared to their near-surface nighttime habitat. Although it is well known that low oxygen levels can inhibit respiratory activity, the respiration response of tropical copepods and euphausiids to relevant pCO2, pO2 and temperature conditions remains poorly parameterized. Further, the regulation of ammonium excretion at OMZ conditions is generally not well understood. It was recently estimated that DVM-mediated ammonium supply considerably fuels bacterial anaerobic ammonium oxidation - a major loss process for fixed nitrogen in the ocean. These estimates were based on the implicit assumption that hypoxia or anoxia in combination with hypercapnia (elevated pCO2) does not result in a downregulation of ammonium excretion. Here we show that exposure to OMZ conditions can result in strong depression of respiration and ammonium excretion in calanoid copepods and euphausiids from the Eastern Tropical North Atlantic and the Eastern Tropical South Pacific. These physiological responses need to be taken into account when estimating DVM-mediated fluxes of carbon and nitrogen into OMZs.

Effect of oxygen minimum zone formation on communities of marine protists

PubMed Central

Orsi, William; Song, Young C; Hallam, Steven; Edgcomb, Virginia

2012-01-01

Changes in ocean temperature and circulation patterns compounded by human activities are leading to oxygen minimum zone (OMZ) expansion with concomitant alteration in nutrient and climate active trace gas cycling. Here, we report the response of microbial eukaryote populations to seasonal changes in water column oxygen-deficiency using Saanich Inlet, a seasonally anoxic fjord on the coast of Vancouver Island British Columbia, as a model ecosystem. We combine small subunit ribosomal RNA gene sequencing approaches with multivariate statistical methods to reveal shifts in operational taxonomic units during successive stages of seasonal stratification and renewal. A meta-analysis is used to identify common and unique patterns of community composition between Saanich Inlet and the anoxic/sulfidic Cariaco Basin (Venezuela) and Framvaren Fjord (Norway) to show shared and unique responses of microbial eukaryotes to oxygen and sulfide in these three environments. Our analyses also reveal temporal fluctuations in rare populations of microbial eukaryotes, particularly anaerobic ciliates, that may be of significant importance to the biogeochemical cycling of methane in OMZs. PMID:22402396

Sink or link? The bacterial role in benthic carbon cycling in the Arabian Sea's oxygen minimum zone

NASA Astrophysics Data System (ADS)

Pozzato, L.; Van Oevelen, D.; Moodley, L.; Soetaert, K.; Middelburg, J. J.

2013-11-01

The bacterial loop, the consumption of dissolved organic matter (DOM) by bacteria and subsequent transfer of bacterial carbon to higher trophic levels, plays a prominent role in pelagic food webs. However, its role in sedimentary ecosystems is not well documented. Here we present the results of isotope tracer experiments performed under in situ oxygen conditions in sediments from inside and outside the Arabian Sea's oxygen minimum zone (OMZ) to study the importance of the microbial loop in this setting. Particulate organic matter, added as phytodetritus, was processed by bacteria, protozoa and metazoans, while dissolved organic matter was processed only by bacteria and there was very little, if any, transfer to higher trophic levels within the 7 day experimental period. This lack of significant transfer of bacterial-derived carbon to metazoan consumers indicates that the bacterial loop is rather inefficient, in sediments both inside and outside the OMZ. Moreover, metazoans directly consumed labile particulate organic matter resources and thus competed with bacteria for phytodetritus.

Bacterioplankton Populations within the Oxygen Minimum Zone of the Sargasso Sea

NASA Astrophysics Data System (ADS)

Schuler, G.; Parsons, R. J.; Johnson, R. J.

2016-02-01

Oxygen minimum zones are present throughout the world's oceans, and occur at depths between 200 to 1000m. Heterotrophic bacteria reduce the dissolved oxygen within this layer through respiration, while metabolizing falling particles. This report studied the bacterioplankton in the oxygen minimum zone at the BATS (Bermuda Atlantic Times-series Study) site from July 2014 until November 2014. Total bacterioplankton populations were enumerated through direct counts. In the transitional zone (400m-800m) of the oxygen minimum zone, a secondary bacterioplankton peak formed. This study used FISH (Fluorescent in situ hybridization) and CARD-FISH (Catalyzed Reporter Deposition-Fluorescent in situ hybridization) to enumerate specific bacterial and archaeal taxa. Crenarchaeota (including Thaumarchaeota) increased in abundance within the upper oxycline. Thaumarchaeota have the ammonia monooxygenase gene that oxidizes ammonium into nitrite in low oxygen conditions. Amplification of the amoA gene confirmed that ammonia oxidizing archaea (AOA) were present within the OMZ. Using Terminal Restriction Fragment Length Polymorphism (T-RFLP), the bacterial community structure showed high similarity based depth zones (0-80m, 160-600m, and 800-4500m). Niskin experiments determined that water collected at 800m had an exponential increase in bacterioplankton over time. While experimental design did not allow for oxygen levels to be maintained, the bacterioplankton community was predominantly bacteria with eubacteria positive cells making up 89.3% of the of the total bacterioplankton community by day 34. Improvements to the experimental design are required to determine which specific bacterial taxa caused this increase at 800m. This study suggests that there are factors other than oxygen influencing bacterioplankton populations at the BATS site, and more analysis is needed once the BATS data is available to determine the key drivers of bacterioplankton dynamics within the BATS OMZ.

Oceanography. Centennial changes in North Pacific anoxia linked to tropical trade winds.

PubMed

Deutsch, Curtis; Berelson, William; Thunell, Robert; Weber, Thomas; Tems, Caitlin; McManus, James; Crusius, John; Ito, Taka; Baumgartner, Timothy; Ferreira, Vicente; Mey, Jacob; van Geen, Alexander

2014-08-08

Climate warming is expected to reduce oxygen (O2) supply to the ocean and expand its oxygen minimum zones (OMZs). We reconstructed variations in the extent of North Pacific anoxia since 1850 using a geochemical proxy for denitrification (δ(15)N) from multiple sediment cores. Increasing δ(15)N since ~1990 records an expansion of anoxia, consistent with observed O2 trends. However, this was preceded by a longer declining δ(15)N trend that implies that the anoxic zone was shrinking for most of the 20th century. Both periods can be explained by changes in winds over the tropical Pacific that drive upwelling, biological productivity, and O2 demand within the OMZ. If equatorial Pacific winds resume their predicted weakening trend, the ocean's largest anoxic zone will contract despite a global O2 decline. Copyright © 2014, American Association for the Advancement of Science.

The Effect of Changes in the Hadley Circulation on Oceanic Oxygen Minimum Zones

NASA Astrophysics Data System (ADS)

De La Cruz Tello, G.; Ummenhofer, C.; Karnauskas, K. B.

2014-12-01

Recent research argued that the Hadley circulation (HC) is composed of three regional cells located at the eastern edges of the ocean basins, rather than a single, globe-encircling cell as the classic textbook view suggests. The HC is expected to expand in concert with global warming, which means that the dry regions beneath the descending branches of the HC are projected to become even drier. Changes in the HC are thus likely to impact freshwater resources on land, as well as the underlying ocean in the subtropics. The eastern edges of ocean basins are characterized by oxygen minimum zones (OMZs), which are regions of very low oxygen concentrations. They affect marine life, as many animals cannot handle the stress caused by such conditions. OMZs have expanded and shoaled in the last 50 years, and they are expected to continue to do so as global climate changes. The purpose of this research is to find links between the projected changes in OMZs and the HC. The National Center for Atmospheric Research (NCAR) Community Earth System Model 1.0 (CESM), Representative Concentration Pathways 8.5 (RCP8.5) experiment with a resolution of 0.9 by 1.25 degrees, which formed part of the Coupled Model Intercomparison Project phase 5 (CMIP5), was used for this analysis. Meridional winds and oceanic oxygen concentrations were the primarily analyzed variables. Latitudinal ocean oxygen slices demonstrate the OMZs' location along the eastern edges of ocean basins. Meridional winds overlayed with oxygen concentration are consistent with the idea that surface meridional 'Hadleywise flow' (i.e., towards the equator at the surface and towards the poles aloft) and OMZs are linked through changes in upwelling. Area-averaged time series spanning the historical period through to the end of the 21st century with RCP8.5 confirm that future changes in OMZs and the HC may be connected. Further research could lead to improved understanding of the factors that drive changes in both, which could help anticipate and mitigate the consequences discussed previously.

A 22,000 year record of changing redox conditions from the Peruvian Oxygen Minimum Zone (OMZ): benthic foraminifera approach

NASA Astrophysics Data System (ADS)

Erdem, Z.; Schönfeld, J.; Glock, N.

2015-12-01

Benthic foraminifera have been used as proxies for the prevailing conditions at the sediment-water interface. Their distribution patterns are thought to facilitate reconstruction of past environmental conditions. Variations of bottom water oxygenation can be traced by the downcore distribution of benthic foraminifera and some of their morphological characters. Being one of the strongest and most pronounced OMZs in today's world oceans, the Peruvian OMZ is a key area to study such variations in relation with changing climate. Spatial changes or an extension of the OMZ through time and space are investigated using sediment cores from the lower OMZ boundary. We focus on time intervals Late Holocene, Early Holocene, Bølling Allerød, Heinrich-Stadial 1 and Last Glacial Maximum (LGM) to investigate changes in bottom-water oxygen and redox conditions. The recent distributions of benthic foraminiferal assemblages provide background data for an interpretation of the past conditions. Living benthic foraminiferal faunas from the Peruvian margin are structured with the prevailing bottom-water oxygen concentrations today (Mallon et al., 2012). Downcore distribution of benthic foraminiferal assemblages showed fluctuations in the abundance of the indicator species depicting variations and a decreasing trend in bottom water oxygen conditions since the LGM. In addition, changes in bottom-water oxygen and nitrate concentrations are reconstructed for the same time intervals by the pore density in tests of Planulina limbata and Bolivina spissa (Glock et al., 2011), respectively. The pore densities also indicate a trend of higher oxygen and nitrate concentrations in the LGM compared to the Holocene. Combination of both proxies provide information on past bottom-water conditions and changes of oxygen concentrations for the Peruvian margin. Glock et al., 2011: Environmental influences on the pore density of Bolivina spissa (Cushman), Journal of Foraminiferal Research, v. 41, no. 1, p. 22-32. Mallon et al., 2012: The response of benthic foraminifera to low-oxygen conditions of the Peruvian oxygen minimum zone, in ANOXIA, pp.305-322.

Dynamics of the Indian-Ocean oxygen minimum zones

NASA Astrophysics Data System (ADS)

McCreary, Julian P.; Yu, Zuojun; Hood, Raleigh R.; Vinaychandran, P. N.; Furue, Ryo; Ishida, Akio; Richards, Kelvin J.

2013-05-01

In the Indian Ocean, mid-depth oxygen minimum zones (OMZs) occur in the Arabian Sea and the Bay of Bengal. The lower part of the Arabian-Sea OMZ (ASOMZ; below 400 m) intensifies northward across the basin; in contrast, its upper part (above 400 m) is located in the central/eastern basin, well east of the most productive regions along the western boundary. The Bay-of-Bengal OMZ (BBOMZ), although strong, is weaker than the ASOMZ. To investigate the processes that maintain the Indian-Ocean OMZs, we obtain a suite of solutions to a coupled biological/physical model. Its physical component is a variable-density, 61/2 >-layer model, in which each layer corresponds to a distinct dynamical regime or water-mass type. Its biological component has six compartments: nutrients, phytoplankton, zooplankton, two size classes of detritus, and oxygen. Because the model grid is non-eddy resolving (0.5°), the biological model also includes a parameterization of enhanced mixing based on the eddy kinetic energy derived from satellite observations. To explore further the impact of local processes on OMZs, we also obtain analytic solutions to a one-dimensional, simplified version of the biological model. Our control run is able to simulate basic features of the oxygen, nutrient, and phytoplankton fields throughout the Indian Ocean. The model OMZs result from a balance, or lack thereof, between a sink of oxygen by remineralization and subsurface oxygen sources due primarily to northward spreading of oxygenated water from the Southern Hemisphere, with a contribution from Persian-Gulf water in the northern Arabian Sea. The northward intensification of the lower ASOMZ results mostly from horizontal mixing since advection is weak in its depth range. The eastward shift of the upper ASOMZ is due primarily to enhanced advection and vertical eddy mixing in the western Arabian Sea, which spread oxygenated waters both horizontally and vertically. Advection carries small detritus from the western boundary into the central/eastern Arabian Sea, where it provides an additional source of remineralization that drives the ASOMZ to suboxic levels. The model BBOMZ is weaker than the ASOMZ because the Bay lacks a remote source of detritus from the western boundary. Although detritus has a prominent annual cycle, the model OMZs do not because there is not enough time for significant remineralization to occur.

Functioning of the Ocean Biological Pump in the Oxygen Minimum Zones

NASA Astrophysics Data System (ADS)

Moore, J. K.

2015-12-01

Oxygen minimum zones occur at mid-depths in the water column in regions with weak ventilation and relatively high export of organic matter from surface waters. They are important ocean for ocean biogeochemistry, and potentially for climate, as sites of water column denitrification and nitrous oxide production. Denitrification is the dominant loss process for fixed nitrogen in the oceans, and can thus affect the ocean inventory of this key nutrient. Denitrification is less energetically efficient than oxic remineralization. Larger zooplankton, which feed on sinking particles, are not present in the lowest oxygen waters. Both of these factors suggest that the remineralization of sinking particles may be slower within the OMZs than in more oxygenated waters. There is limited field evidence and from some modeling studies that remineralization is slower (remineralization length scales are longer) within OMZ waters. In this talk, I will present results from the Community Earth System Model (CESM) ocean component attempting to test this hypothesis. Comparing model results with observed ocean biogeochemical tracer distributions (i.e., phosphate, oxygen), I will examine whether slower remineralization within low oxygen waters provides a better match between simulated and observed tracer distributions. Longer remineralization length scales under low oxygen conditions would provide a negative feedback under global warming scenarios. The biological pump would transfer organic materials to depth more efficiently as ocean oxygen concentrations decline and the OMZs expand.

Ammonia-Oxidizing β-Proteobacteria from the Oxygen Minimum Zone off Northern Chile▿

PubMed Central

Molina, Verónica; Ulloa, Osvaldo; Farías, Laura; Urrutia, Homero; Ramírez, Salvador; Junier, Pilar; Witzel, Karl-Paul

2007-01-01

The composition of ammonia-oxidizing bacteria from the β-Proteobacteria subclass (βAOB) was studied in the surface and upper-oxycline oxic waters (2- to 50-m depth, ∼200 to 44 μM O2) and within the oxygen minimum zone (OMZ) suboxic waters (50- to 400-m depth, ≤10 μM O2) of the eastern South Pacific off northern Chile. This study was carried out through cloning and sequencing of genes coding for 16S rRNA and the ammonia monooxygenase enzyme active subunit (amoA). Sequences affiliated with Nitrosospira-like cluster 1 dominated the 16S rRNA gene clone libraries constructed from both oxic and suboxic waters. Cluster 1 consists exclusively of yet-uncultivated βAOB from marine environments. However, a single clone, out of 224 obtained from the OMZ, was found to belong to Nitrosospira lineage cluster 0. To our knowledge, cluster 0 sequences have been derived from βAOB isolated only from sand, soil, and freshwater environments. Sequences in clone libraries of the amoA gene from the surface and upper oxycline could be grouped in a marine subcluster, also containing no cultured representatives. In contrast, all 74 amoA sequences originating from the OMZ were either closely affiliated with cultured Nitrosospira spp. from clusters 0 and 2 or with other yet-uncultured βAOB from soil and an aerated-anoxic Orbal process waste treatment plant. Our results reveal the presence of Nitrosospira-like βAOB in both oxic and suboxic waters associated with the OMZ but with a clear community shift at the functional level (amoA) along the strong oxygen gradient. PMID:17416686

Ammonia-oxidizing beta-proteobacteria from the oxygen minimum zone off northern Chile.

PubMed

Molina, Verónica; Ulloa, Osvaldo; Farías, Laura; Urrutia, Homero; Ramírez, Salvador; Junier, Pilar; Witzel, Karl-Paul

2007-06-01

The composition of ammonia-oxidizing bacteria from the beta-Proteobacteria subclass (betaAOB) was studied in the surface and upper-oxycline oxic waters (2- to 50-m depth, approximately 200 to 44 microM O(2)) and within the oxygen minimum zone (OMZ) suboxic waters (50- to 400-m depth, < or =10 microM O(2)) of the eastern South Pacific off northern Chile. This study was carried out through cloning and sequencing of genes coding for 16S rRNA and the ammonia monooxygenase enzyme active subunit (amoA). Sequences affiliated with Nitrosospira-like cluster 1 dominated the 16S rRNA gene clone libraries constructed from both oxic and suboxic waters. Cluster 1 consists exclusively of yet-uncultivated betaAOB from marine environments. However, a single clone, out of 224 obtained from the OMZ, was found to belong to Nitrosospira lineage cluster 0. To our knowledge, cluster 0 sequences have been derived from betaAOB isolated only from sand, soil, and freshwater environments. Sequences in clone libraries of the amoA gene from the surface and upper oxycline could be grouped in a marine subcluster, also containing no cultured representatives. In contrast, all 74 amoA sequences originating from the OMZ were either closely affiliated with cultured Nitrosospira spp. from clusters 0 and 2 or with other yet-uncultured betaAOB from soil and an aerated-anoxic Orbal process waste treatment plant. Our results reveal the presence of Nitrosospira-like betaAOB in both oxic and suboxic waters associated with the OMZ but with a clear community shift at the functional level (amoA) along the strong oxygen gradient.

A model study of warming-induced phosphorus-oxygen feedbacks in open-ocean oxygen minimum zones on millennial timescales

NASA Astrophysics Data System (ADS)

Niemeyer, Daniela; Kemena, Tronje P.; Meissner, Katrin J.; Oschlies, Andreas

2017-05-01

Observations indicate an expansion of oxygen minimum zones (OMZs) over the past 50 years, likely related to ongoing deoxygenation caused by reduced oxygen solubility, changes in stratification and circulation, and a potential acceleration of organic matter turnover in a warming climate. The overall area of ocean sediments that are in direct contact with low-oxygen bottom waters also increases with expanding OMZs. This leads to a release of phosphorus from ocean sediments. If anthropogenic carbon dioxide emissions continue unabated, higher temperatures will cause enhanced weathering on land, which, in turn, will increase the phosphorus and alkalinity fluxes into the ocean and therefore raise the ocean's phosphorus inventory even further. A higher availability of phosphorus enhances biological production, remineralisation and oxygen consumption, and might therefore lead to further expansions of OMZs, representing a positive feedback. A negative feedback arises from the enhanced productivity-induced drawdown of carbon and also increased uptake of CO2 due to weathering-induced alkalinity input. This feedback leads to a decrease in atmospheric CO2 and weathering rates. Here, we quantify these two competing feedbacks on millennial timescales for a high CO2 emission scenario. Using the University of Victoria (UVic) Earth System Climate Model of intermediate complexity, our model results suggest that the positive benthic phosphorus release feedback has only a minor impact on the size of OMZs in the next 1000 years. The increase in the marine phosphorus inventory under assumed business-as-usual global warming conditions originates, on millennial timescales, almost exclusively (> 80 %) from the input via terrestrial weathering and causes a 4- to 5-fold expansion of the suboxic water volume in the model.

Evaluation of I/Ca ratios in benthic foraminifera from the Peruvian oxygen minimum zone as proxy for redox conditions in the ambient water masses

NASA Astrophysics Data System (ADS)

Glock, N.; Liebetrau, V.; Eisenhauer, A.

2014-12-01

Tropical oxygen minimum zones (OMZs) are most important areas of oxygen depletion in today´s oceans and nutrient cycling in these regions has a large socio-economic impact because they account for about 17% of the global commercial fish catches(1). Possibly increasing magnitude and area of oxygen depletion in these regions, might endanger rich pelagic fish habitats in the future threatening the global marine food supply. By the use of a quantitative redox proxy in OMZs, reconstruction of the temporal variation in OMZ extension eventually providing information about past and future changes in oxygenation and the anthropogenic role in the recent trend of expanding OMZs(2). Recent work has shown that iodine/calcium (I/Ca) ratios in marine carbonates are a promising proxy for ambient oxygen concentration(3). Our study explores the correlation of I/Ca ratios in four benthic foraminiferal species (three calcitic, one aragonitic) from the Peruvian OMZ to bottom water oxygen concentrations ([O2]BW) and evaluates foraminiferal I/Ca ratios as a possible redox proxy for the ambient water masses. Our results show that all species have a positive trend in the I/Ca ratios as a function of [O2]BW. Only for the aragonitic species Hoeglundina elegans this trend is not significant. The highest significance has been found for Uvigerina striata (I/Ca = 0.032(±0.004).[O2]BW + 0.29(±0.03), R² = 0.61, F = 75, P < 0.0001). Although I/Ca ratios in benthic foraminifera appear to be a robust redox proxy there are some methodical issues which have to be considered. These "pitfalls" include: (i) the volatility of iodine in acidic solutions, (ii) a species dependency of the I/Ca-[O2]BW relationship which is either related to a strong vital effect or toa species dependency on the calcification depth within sediment, and (iii) the inter-test variability of I/Ca between different specimens from the same species and habitat. (1): FAO FishStat: Fisheries and aquaculture software. In: FAO Fisheries and Aquaculture Department[online]. Rome. Updated 28 Nov. 2013. (2): Stramma et al.: Expanding Oxygen-Minimum Zones in the Tropical Oceans, Science, 320, 655-658, 2008. (3): Lu et al.: Iodine to calcium ratios in marine carbonate as a paleo-redox proxy during oceanic anoxic events, Geology, 38, 1107-1110, 2010.

Comparative organic geochemistry of Indian margin (Arabian Sea) sediments: estuary to continental slope

NASA Astrophysics Data System (ADS)

Cowie, G.; Mowbray, S.; Kurian, S.; Sarkar, A.; White, C.; Anderson, A.; Vergnaud, B.; Johnstone, G.; Brear, S.; Woulds, C.; Naqvi, S. W.; Kitazato, H.

2014-02-01

Surface sediments from sites across the Indian margin of the Arabian Sea were analysed for their carbon and nitrogen compositions (elemental and stable isotopic), grain size distributions and biochemical indices of organic matter (OM) source and/or degradation state. Site locations ranged from the estuaries of the Mandovi and Zuari rivers to depths of ~ 2000 m on the continental slope, thus spanning nearshore muds and sands on the shelf and both the semi-permanent oxygen minimum zone (OMZ) on the upper slope (~ 200-1300 m) and the seasonal hypoxic zone that impinges on the shelf. Source indices showed mixed marine and terrigenous OM within the estuaries, and overwhelming predominance (80%+) of marine OM on the shelf and slope. Thus, riverine OM is heavily diluted by autochthonous marine OM and/or is efficiently remineralised within or immediately offshore of the estuaries. Any terrigenous OM that is exported appears to be retained in nearshore muds; lignin phenols indicate that the small terrigenous OM content of slope sediments is of different origin, potentially from rivers to the north. Organic C contents of surface shelf and slope sediments varied from < 0.5 wt % in relict shelf sands to over 7 wt % at slope sites within the OMZ, decreasing to ≤ 1 wt % at 2000 m. Major variability (~ 5 wt %) was found at slope sites within the OMZ of similar depth and near-identical bottom-water oxygen concentration. A strong relationship between organic C and sediment grain size was seen for sediments within the OMZ, but lower C loadings were found for sites on the shelf and below the OMZ. Diagenetic indices confirmed that lower C content below the OMZ is associated with greater extent of OM degradation, but that C-poor shelf sediments are not consistently more degraded than those within the OMZ. Together, the results indicate that OM enrichment on the upper slope can be explained by physical controls (winnowing and/or dilution) on the shelf and progressive OM degradation with increasing oxygen exposure below the OMZ. Reduced oxygen exposure may contribute to OM enrichment at some sites within the OMZ, but hydrodynamic processes are the overriding control on sediment OM distribution.

Controlling factors of the OMZ in the Arabian Sea

NASA Astrophysics Data System (ADS)

Resplandy, L.; Lévy, M.; Bopp, L.; Echevin, V.; Pous, S.; Sarma, V. V. S. S.; Kumar, D.

2012-05-01

In-situ observations indicate that the Arabian Sea oxygen minimum zone (OMZ) is only weakly influenced by the strong seasonal cycle of ocean dynamic and biogeochemistry forced by the asian monsoon system and it is spatially decorrelated from the coastal upwelling systems where the biological production is the strongest. In this study we examine the factors controlling the seasonality and the spatial distribution of the OMZ in the Arabian Sea using a coupled bio-physical model. We find that the oxygen concentration in the OMZ displays a seasonal cycle with an amplitude of 5-15 % of the annual mean oxygen concentration. The OMZ is ventilated by lateral ventilation along the western boundary current and in the coastal undercurrent along India during the summer monsoon and by coastal downwelling and negative Ekman pumping during the fall intermonsoon and winter monsoon. This ventilation is counterbalanced by strong coastal upwelling and positive Ekman pumping of low oxygen waters at the base of the OMZ during the spring intermonsoon. Although the factors controlling the OMZ seasonality are associated with the men circulation, we find that mesoscale dynamics modulates them by limiting the vertical ventilation during winter and enhancing it through lateral advection during the rest of the year. Processes explaining the establishment and spatial distribution of the OMZ were quantified using a perturbation experiment initialised with no OMZ. As expected, the oxygen depletion is triggered by strong biological activity in central Arabian Sea during winter and in western and eastern boundary coastal upwelling systems during summer. We find that the 3-D ocean dynamic largely controls the spatial distribution of the OMZ. The eastward shift ensues from the northward lateral transport of ventilated waters along the western and eastern coasts and the advection offshore of low oxygen waters formed in the upwelling system.

On the existence of free and metal complexed sulfide in the Arabian Sea and its oxygen minimum zone

NASA Astrophysics Data System (ADS)

Theberge, Stephen M.; Luther, George W.; Farrenkopf, Anna M.

Free hydrogen sulfide was not detected in the oxygen minimum zone (OMZ) of the Arabian Sea during legs D1 (September 1992) and D3 (October-November 1992) of the Netherlands Indian Ocean Programme (NIOP). However, sulfide complexed to metals was detected by cathodic stripping square wave voltammetry at 2 nM or less throughout the water column. A slight increase in sulfide was measured in the OMZ relative to the surface waters and may be related to sulfur release from organic matter during decomposition. Sulfide complexes are of two general types at low concentrations of metal and sulfide. First, metals such as Mn, Fe, Co and Ni form complexes with bisulfide ion (HS -) that are kinetically labile to dissociation and are reactive. Second, metals such as Cu and Zn form multinuclear complexes with sulfide (S 2-) that are kinetically inert to dissociation; thus, they are less reactive than free (bi)sulfide and the labile metal bisulfide complexes. Zinc and copper sulfide complexes are important in allowing hydrogen sulfide to persist in seawater which contains measurable oxygen.

Live (Rose Bengal stained) foraminiferal faunas from the northern Arabian Sea: faunal succession within and below the OMZ

NASA Astrophysics Data System (ADS)

Caulle, Clemence; Koho, Karoliina; Mojtahid, Meryem; Reichart, Gert-Jan; Jorissen, Frans

2014-05-01

Live (Rose Bengal stained) benthic foraminifera from the Murray Ridge, within and below the northern Arabian Sea Oxygen Minimum Zone (OMZ), were studied in order to determine the relationship between faunal composition, bottom-water oxygenation (BWO), pore-water chemistry and organic matter (organic carbon and phytopigment) distribution. A series of multicores were recovered from a ten-station oxygen (BWO: 2µM - 78µM) and bathymetric (885 - 3010m depth) transect during the winter monsoon in January 2009. Foraminifera were investigated from three different size fractions (63-125µm, 125-150µm and >150µm). The larger foraminifera (>125µm) were strongly dominated by agglutinated species (e.g. Reophax spp.). In contrast, in the 63-125µm fraction, calcareous taxa were more abundant, especially in the core of the OMZ. On the basis of a Principal Components Analysis, three foraminiferal groups were identified and correlated to the environmental parameters by Canonical Correspondence Analysis. The faunas from the shallowest stations, in the core of the OMZ (BWO: 2µM), were composed of "low oxygen" species, typical of the Arabian Sea OMZ (e.g., Rotaliatinopsis semiinvoluta, Praeglobobulimina sp., Bulimina exilis, Uvigerina peregrina type parva). These taxa are adapted to the very low BWO conditions and to high phytodetritus supplies. The transitional group, typical for the lower part of the OMZ (BWO: 5-16µM), is composed of species, which are tolerant as well to low-oxygen concentrations, but may be less critical with respect to organic supplies (e.g. Globocassidulina subglobosa, Ehrenbergina trigona). Below the OMZ (BWO: 26-78µM), where food availability is more limited and becomes increasingly restricted to surficial sediments, cosmopolitan calcareous taxa were present, such as Bulimina aculeata, Melonis barleeanus, Uvigerina peregrina and Epistominella exigua. Miliolids were uniquely observed in this last zone, reflecting the higher BWO and/or lower organic input.

Molecular tools for investigating microbial community structure and function in oxygen-deficient marine waters.

PubMed

Hawley, Alyse K; Kheirandish, Sam; Mueller, Andreas; Leung, Hilary T C; Norbeck, Angela D; Brewer, Heather M; Pasa-Tolic, Ljiljana; Hallam, Steven J

2013-01-01

Water column oxygen (O2)-deficiency shapes food-web structure by progressively directing nutrients and energy away from higher trophic levels into microbial community metabolism resulting in fixed nitrogen loss and greenhouse gas production. Although respiratory O2 consumption during organic matter degradation is a natural outcome of a productive surface ocean, global-warming-induced stratification intensifies this process leading to oxygen minimum zone (OMZ) expansion. Here, we describe useful tools for detection and quantification of potential key microbial players and processes in OMZ community metabolism including quantitative polymerase chain reaction primers targeting Marine Group I Thaumarchaeota, SUP05, Arctic96BD-19, and SAR324 small-subunit ribosomal RNA genes and protein extraction methods from OMZ waters compatible with high-resolution mass spectrometry for profiling microbial community structure and functional dynamics. © 2013 Elsevier Inc. All rights reserved.

A compendium of geochemical information from the Saanich Inlet water column

NASA Astrophysics Data System (ADS)

Torres-Beltrán, Mónica; Hawley, Alyse K.; Capelle, David; Zaikova, Elena; Walsh, David A.; Mueller, Andreas; Scofield, Melanie; Payne, Chris; Pakhomova, Larysa; Kheirandish, Sam; Finke, Jan; Bhatia, Maya; Shevchuk, Olena; Gies, Esther A.; Fairley, Diane; Michiels, Céline; Suttle, Curtis A.; Whitney, Frank; Crowe, Sean A.; Tortell, Philippe D.; Hallam, Steven J.

2017-10-01

Extensive and expanding oxygen minimum zones (OMZs) exist at variable depths in coastal and open ocean waters. As oxygen levels decline, nutrients and energy are increasingly diverted away from higher trophic levels into microbial community metabolism, resulting in fixed nitrogen loss and production of climate active trace gases including nitrous oxide and methane. While ocean deoxygenation has been reported on a global scale, our understanding of OMZ biology and geochemistry is limited by a lack of time-resolved data sets. Here, we present a historical dataset of oxygen concentrations spanning fifty years and nine years of monthly geochemical time series observations in Saanich Inlet, a seasonally anoxic fjord on the coast of Vancouver Island, British Columbia, Canada that undergoes recurring changes in water column oxygenation status. This compendium provides a unique geochemical framework for evaluating long-term trends in biogeochemical cycling in OMZ waters.

Communities of nirS-type denitrifiers in the water column of the oxygen minimum zone in the eastern South Pacific.

PubMed

Castro-González, Maribeb; Braker, Gesche; Farías, Laura; Ulloa, Osvaldo

2005-09-01

The major sites of water column denitrification in the ocean are oxygen minimum zones (OMZ), such as one in the eastern South Pacific (ESP). To understand the structure of denitrifying communities in the OMZ off Chile, denitrifier communities at two sites in the Chilean OMZ (Antofagasta and Iquique) and at different water depths were explored by terminal restriction fragment length polymorphism analysis and cloning of polymerase chain reaction (PCR)-amplified nirS genes. NirS is a functional marker gene for denitrification encoding cytochrome cd1-containing nitrite reductase, which catalyses the reduction of nitrite to nitric oxide, the key step in denitrification. Major differences were found between communities from the two geographic locations. Shifts in community structure occurred along a biogeochemical gradient at Antofagasta. Canonical correspondence analysis indicated that O2, NO3-, NO2- and depth were important environmental factors governing these communities along the biogeochemical gradient in the water column. Phylogenetic analysis grouped the majority of clones from the ESP in distinct clusters of genes from presumably novel and yet uncultivated denitrifers. These nirS clusters were distantly related to those found in the water column of the Arabian Sea but the phylogenetic distance was even higher compared with environmental sequences from marine sediments or any other habitat. This finding suggests similar environmental conditions trigger the development of denitrifiers with related nirS genotypes despite large geographic distances.

Modelling Ecosystem Dynamics of the Oxygen Minimum Zones in the Angola Gyre and the Northern Benguela Upwelling System.

NASA Astrophysics Data System (ADS)

Schmidt, M.; Eggert, A.

2016-02-01

The Angola Gyre and the Northern Benguela Upwelling System are two major oxygen minimum zones (OMZ) of different kind connected by the system of African Eastern Boundary Currents. We discuss results from a 3-dimensional coupled biogeochemical model covering both oxygen-deficient systems. The biogeochemical model component comprises trophic levels up to zooplankton. Physiological properties of organisms are parameterized from field data gained mainly in the course of the project "Geochemistry and Ecology of the Namibian Upwelling System" (GENUS). The challenge of the modelling effort is the different nature of both systems. The Angola Gyre, located in a "shadow zone" of the tropical Atlantic, has a low productivity and little ventilation, hence a long residence time of water masses. In the northern Benguela Upwelling System, trade winds drive an intermittent, but permanent nutrient supply into the euphotic zone which fuels a high coastal productivity, large particle export and high oxygen consumption from dissimilatory processes. In addition to the local processes, oxygen-deficient water formed in the Angola Gyre is one of the source water masses of the poleward undercurrent, which feeds oxygen depleted water into the Benguela system. In order to simulate the oxygen distribution in the Benguela system, both physical transport as well as local biological processes need to be carefully adjusted in the model. The focus of the analysis is on the time scale and the relative contribution of the different oxygen related processes to the oxygen budgets in both the oxygen minimum zones. Although these are very different in both the OMZ, the model is found as suitable to produce oxygen minimum zones comparable with observations in the Benguela and the Angola Gyre as well. Variability of the oxygen concentration in the Angola Gyre depends strongly on organismic oxygen consumption, whereas the variability of the oxygen concentration on the Namibian shelf is governed mostly by pole-ward advection of tropical water masses.

Dead zone or oasis in the open ocean? Zooplankton distribution and migration in low-oxygen modewater eddies

NASA Astrophysics Data System (ADS)

Hauss, H.; Christiansen, S.; Schütte, F.; Kiko, R.; Edvam Lima, M.; Rodrigues, E.; Karstensen, J.; Löscher, C. R.; Körtzinger, A.; Fiedler, B.

2015-11-01

The eastern tropical North Atlantic (ETNA) features a mesopelagic oxygen minimum zone (OMZ) at approximately 300-600 m depth. Here, oxygen concentrations rarely fall below 40 μmol O2 kg-1, but are thought to decline in the course of climate change. The recent discovery of mesoscale eddies that harbour a shallow suboxic (< 5 μmol O2 kg-1) OMZ just below the mixed layer could serve to identify zooplankton groups that may be negatively or positively affected by on-going ocean deoxygenation. In spring 2014, a detailed survey of a suboxic anticyclonic modewater eddy (ACME) was carried out near the Cape Verde Ocean Observatory (CVOO), combining acoustic and optical profiling methods with stratified multinet hauls and hydrography. The multinet data revealed that the eddy was characterized by an approximately 1.5-fold increase in total area-integrated zooplankton abundance. A marked reduction in acoustic target strength (derived from shipboard ADCP, 75kHz) within the shallow OMZ at nighttime was evident. Acoustic scatterers were avoiding the depth range between about 85 to 120 m, where oxygen concentrations were lower than approximately 20 μmol O2 kg-1, indicating habitat compression to the oxygenated surface layer. This observation is confirmed by time-series observations of a moored ADCP (upward looking, 300 kHz) during an ACME transit at the CVOO mooring in 2010. Nevertheless, part of the diurnal vertical migration (DVM) from the surface layer to the mesopelagic continued through the shallow OMZ. Based upon vertically stratified multinet hauls, Underwater Vision Profiler (UVP5) and ADCP data, four strategies have been identified followed by zooplankton in response to the eddy OMZ: (i) shallow OMZ avoidance and compression at the surface (e.g. most calanoid copepods, euphausiids), (ii) migration to the shallow OMZ core during daytime, but paying O2 debt at the surface at nighttime (e.g. siphonophores, Oncaea spp., eucalanoid copepods), (iii) residing in the shallow OMZ day and night (e.g. ostracods, polychaetes), and iv) DVM through the shallow OMZ from deeper oxygenated depths to the surface and back. For strategy (i), (ii) and (iv), compression of the habitable volume in the surface may increase prey-predator encounter rates, rendering zooplankton more vulnerable to predation and potentially making the eddy surface a foraging hotspot for higher trophic levels. With respect to long-term effects of ocean deoxygenation, we expect zooplankton avoidance of the mesopelagic OMZ to set in if oxygen levels decline below approximately 20 μmol O2 kg-1. This may result in a positive feedback on the OMZ oxygen consumption rates, since zooplankton respiration within the OMZ as well as active flux of dissolved and particulate organic matter into the OMZ will decline.

Diapycnal diffusivity in the core and oxycline of the tropical North Atlantic oxygen minimum zone

NASA Astrophysics Data System (ADS)

Köllner, Manuela; Visbeck, Martin; Tanhua, Toste; Fischer, Tim

2016-08-01

Diapycnal diffusivity estimates from two Tracer Release Experiments (TREs) and microstructure measurements in the oxycline and core of the oxygen minimum zone (OMZ) in the Eastern Tropical North Atlantic (ETNA) are compared. For the first time, two TREs within the same area at different depths were realized: the Guinea Upwelling Tracer Release Experiment (GUTRE) initiated in 2008 in the oxycline at approximately 320 m depth, and the Oxygen Supply Tracer Release Experiment (OSTRE) initiated in 2012 in the core of the OMZ at approximately 410 m depth. The mean diapycnal diffusivity Dz was found to be insignificantly smaller in the OMZ core with (1.06 ± 0.24) × 10- 5 m2 s- 1 compared to (1.11 ± 0.22) × 10- 5 m2 s- 1 90 m shallower in the oxycline. Unexpectedly, GUTRE tracer was detected during two of the OSTRE surveys which showed that the estimated diapycnal diffusivity from GUTRE over a time period of seven years was within the uncertainty of the previous estimates over a time period of three years. The results are consistent with the Dz estimates from microstructure measurements and demonstrate that Dz does not vary significantly vertically in the OMZ within the depth range of 200-600 m and does not change with time. The presence of a seamount chain in the vicinity of the GUTRE injection region did not cause enhanced Dz compared to the smoother bottom topography of the OSTRE injection region, although the analysis of vertical shear spectra from ship ADCP data showed elevated internal wave energy level in the seamount vicinity. However, the two tracer patches covered increasingly overlapping areas with time and thus spatially integrated increasingly similar fields of local diffusivity, as well as the difference in local stratification counteracted the influence of roughness on Dz. For both experiments no significant vertical displacements of the tracer were observed, thus diapycnal upwelling within the ETNA OMZ is below the uncertainty level of 5 m yr- 1.

Late Quaternary changes in intermediate water oxygenation and oxygen minimum zone, northern Japan: A benthic foraminiferal perspective

NASA Astrophysics Data System (ADS)

Shibahara, Akihiko; Ohkushi, Ken'ichi; Kennett, James P.; Ikehara, Ken

2007-09-01

A strong oxygen minimum zone (OMZ) currently exists at upper intermediate water depths on the northern Japanese margin, NW Pacific. The OMZ results largely from a combination of high surface water productivity and poor ventilation of upper intermediate waters. We investigated late Quaternary history (last 34 kyr) of ocean floor oxygenation and the OMZ using quantitative changes in benthic foraminiferal assemblages in three sediment cores taken from the continental slope off Shimokita Peninsula and Tokachi, northern Japan, at water depths between 975 and 1363 m. These cores are well located within the present-day OMZ, a region of high surface water productivity, and in close proximity to the source region of North Pacific Intermediate Water. Late Quaternary benthic foraminiferal assemblages experienced major changes in response to changes in dissolved oxygen concentration in ocean floor sediments. Foraminiferal assemblages are interpreted to represent three main groups representing oxic, suboxic, and dysoxic conditions. Assemblage changes in all three cores and hence in bottom water oxygenation coincided with late Quaternary climatic episodes, similar to that known for the southern California margin. These episodes, in turn, are correlated with orbital and millennial climate episodes in the Greenland ice core including the last glacial episode, Bølling-Ållerød (B/A), Younger Dryas, Preboreal (earliest Holocene), early Holocene, and late Holocene. The lowest oxygen conditions, marked by dysoxic taxa and laminated sediments in one core, occurred during the B/A and the Preboreal intervals. Suboxic taxa dominated mainly during the last glacial, the Younger Dryas, and most of the Holocene. Dysoxic conditions during the B/A and Preboreal intervals in this region were possibly caused by high surface water productivity at times of reduced intermediate ventilation in the northwestern Pacific. Remarkable similarities are evident in the late Quaternary sequence of benthic foraminiferal assemblage change between the two very distant continental margins of northern Japan and southern California. The oscillations in OMZ strength, reflected by these faunal changes, were widespread and apparently synchronous over wide areas of the North Pacific, reflecting broad changes in intermediate water ventilation and surface ocean productivity closely linked with late Quaternary climate change on millennial and orbital timescales.

Placing an upper limit on cryptic marine sulphur cycling.

PubMed

Johnston, D T; Gill, B C; Masterson, A; Beirne, E; Casciotti, K L; Knapp, A N; Berelson, W

2014-09-25

A quantitative understanding of sources and sinks of fixed nitrogen in low-oxygen waters is required to explain the role of oxygen-minimum zones (OMZs) in controlling the fixed nitrogen inventory of the global ocean. Apparent imbalances in geochemical nitrogen budgets have spurred numerous studies to measure the contributions of heterotrophic and autotrophic N2-producing metabolisms (denitrification and anaerobic ammonia oxidation, respectively). Recently, 'cryptic' sulphur cycling was proposed as a partial solution to the fundamental biogeochemical problem of closing marine fixed-nitrogen budgets in intensely oxygen-deficient regions. The degree to which the cryptic sulphur cycle can fuel a loss of fixed nitrogen in the modern ocean requires the quantification of sulphur recycling in OMZ settings. Here we provide a new constraint for OMZ sulphate reduction based on isotopic profiles of oxygen ((18)O/(16)O) and sulphur ((33)S/(32)S, (34)S/(32)S) in seawater sulphate through oxygenated open-ocean and OMZ-bearing water columns. When coupled with observations and models of sulphate isotope dynamics and data-constrained model estimates of OMZ water-mass residence time, we find that previous estimates for sulphur-driven remineralization and loss of fixed nitrogen from the oceans are near the upper limit for what is possible given in situ sulphate isotope data.

Egg production and hatching success of Calanus chilensis and Acartia tonsa in the northern Chile upwelling zone (23°S), Humboldt Current System

NASA Astrophysics Data System (ADS)

Ruz, Paula M.; Hidalgo, Pamela; Yáñez, Sonia; Escribano, Rubén; Keister, Julie E.

2015-08-01

Oxygen Minimum Zones (OMZ's) are expanding and intensifying as result of climate change, affecting Eastern Boundary Upwelling Systems. Local effects of vertical movements of OMZ's that result from changes in upwelling intensity could reduce or expand the oxygenated surface layer that most zooplanktonic species inhabit in coastal areas. Using the copepods Calanus chilensis and Acartia tonsa as model organisms, an experimental test of the impact of different dissolved oxygen (DO) concentrations (between 0.5 and 5 ml L- 1) on egg production and hatching success was carried out and compared with field estimations of egg production, female and egg abundance in Mejillones Bay (23°S). Abundance of C. chilensis was highly variability and no consistent pattern in egg production and hatching success was found across DO levels, whereas A. tonsa egg production had maximum values between 2.6 and 4.7 ml O2 L- 1 and hatching success was positively correlated with DO (r = 0.75). In the field, temperature was the main factor controlling the dynamics of both species, while Chl-a and DO were also correlated with C. chilensis and A. tonsa, respectively. Principal Component Analysis showed that abundances of both copepods were controlled by temperature, stratification, OMZ depth, and Ekman transport, which together explained more than 70% of the total variance and were the main factors that modulated the populations of C. chilensis and A. tonsa in the upwelling zone of northern Chile (23°S). The differential responses of C. chilensis and A. tonsa to changes in DO concentrations associated with vertical movements of the OMZ suggest that C. chilensis may be better adapted to hypoxic conditions than A. tonsa, however both species are successful and persistent all year-round. We suggest that physiological responses of copepods could be used to evaluate population dynamics affected by the shoaling of OMZ's and the repercussions to trophic food webs of eastern boundary current systems.

Predominance of anaerobic bacterial community over aerobic community contribute to intensify ‘oxygen minimum zone’ in the eastern Arabian Sea

NASA Astrophysics Data System (ADS)

Gonsalves, M.-J.; Paropkari, A. L.; Fernandes, C. E. G.; Loka Bharathi, P. A.; Krishnakumari, L.; Fernando, V.; Nampoothiri, G. E.

2011-08-01

The presence of a delicately poised mid-depth oxygen minimum zone (OMZ) makes the Arabian Sea a unique and important ecosystem. So far, various aspects responsible for its formation have been studied. However, the contributions from bacterial groups mediating its formation and maintaining its intensity are described for the first time in this study. Thus, we hypothesize that the bacterial dynamics along with organic carbon loading result in bringing about differences in the intensity of OMZ between two stations in the Eastern Arabian Sea (EAS). Water column from 2 stations, one from offshore and another from slope, in the EAS were examined for phytoplankton diversity and pertinent groups of culturable bacteria. Vertical profiles of dissolved oxygen, productivity, chlorophyll a, total organic carbon and different physiological groups of bacteria showed well-defined stratified patterns in tandem with physical and chemical stratifications of the water column. The phytoplankton diversity was higher at the slope station (SS) and was dominated by the heterotrophic dinoflagellates. The offshore station (OS) on the other hand, showed lower diversity dominated by diatoms ( p<0.05). This observation could imply relatively higher autotrophy at the OS. Our results show that OMZ from these 'oligotrophic' regions is dominated by anaerobic bacteria. We believe that these bacteria contribute to intensify the OMZ in the EAS. Further, a higher abundance of viable anaerobic bacteria (TVC anaero) and other anaerobic groups at the SS than the OS suggest that the OMZ is relatively much more intense near the slope. Besides, total organic carbon (TOC) load is three-fold higher at the SS than at OS implying its higher accumulation and lower degradability in slope waters. Settling of this more preserved organic carbon in mid-slope sediments in contact with OMZ results in one of the highest enrichments of sedimentary TOC in the world oceans.

Late Glacial-Holocene record of benthic foraminiferal morphogroups from the eastern Arabian Sea OMZ: Paleoenvironmental implications

NASA Astrophysics Data System (ADS)

Verma, K.; Bharti, S. K.; Singh, A. D.

2018-03-01

The Arabian Sea is characterized today by a well-developed and perennial oxygen minimum zone (OMZ) at mid-water depths. The Indian margin where the OMZ impinges provides sediment records ideal to study past changes in the OMZ intensity and its vertical extent in response to the changes of monsoon-driven primary productivity and intermediate water ventilation. Benthic foraminifera, depending upon their adaptation capabilities to variation in sea floor environment and microhabitat preferences, develop various functional morphologies that can be potentially used in paleoenvironmental reconstruction. In this study, we analysed benthic foraminiferal morphogroups in assemblage records of the last 30 ka in a sediment core collected from the lower OMZ of the Indian margin (off Goa). In total, nine morphogroups within two broadly classified epifaunal and infaunal microhabitat categories are identified. The abundance of morphogroups varies significantly during the late Glacial, Deglacial and Holocene. It appears that monsoon wind driven organic matter flux, and water column ventilation governing the OMZ intensity and sea-bottom oxygen condition, have profound influence on structuring the benthic foraminiferal morphogroups. We found a few morphogroups showing major changes in their abundances during the periods corresponding to the northern hemisphere climatic events. Benthic foraminifera with planoconvex tests are abundant during the cold Heinrich events, when the sea bottom was oxygenated due to a better ventilated, weak OMZ; whereas, those having tapered/cylindrical tests dominate during the last glacial maximum and the Holocene between 5 and 8 ka BP, when the OMZ was intensified and poorly ventilated, leading to oxygen-depleted benthic environment. Characteristically, increased abundance of taxa with milioline tests during the Heinrich 1 further suggests enhanced ventilation attributed probably to the influence of oxygen-rich Antarctic Intermediate Water (AAIW).

Quantifying the sources and sinks of nitrite in the oxygen minimum zone of the Eastern Tropical South Pacific

NASA Astrophysics Data System (ADS)

Ji, Qixing; Widner, Brittany; Jayakumar, Amal; Ward, Bess; Mulholland, Margaret

2017-04-01

In coastal upwelling regions, high surface productivity leads to high export and intense remineralization consuming oxygen. This, in combination with slow ventilation, creates oxygen minimum zones (OMZ) in eastern boundary regions of the ocean, such as the one off the Peruvian coast in the Eastern Tropical South Pacific. The OMZ is characterized by a layer of high nitrite concentration coinciding with water column anoxia. Sharp oxygen gradients are located above and below the anoxic layer (upper and lower oxyclines). Thus, the OMZ harbors diverse microbial metabolisms, several of which involve the production and consumption of nitrite. The sources of nitrite are ammonium oxidation and nitrate reduction. The sinks of nitrite include anaerobic ammonium oxidation (anammox), canonical denitrification and nitrite oxidation to nitrate. To quantify the sources and sinks of nitrite in the Peruvian OMZ, incubation experiments with 15N-labeled substrates (ammonium, nitrite and nitrate) were conducted on a research cruise in January 2015. The direct measurements of instantaneous nitrite production and consumption rates were compared with ambient nitrite concentrations to evaluate the turnover rate of nitrite in the OMZ. The distribution of nitrite in the water column showed a two-peak structure. A primary nitrite maximum (up to 0.5 μM) was located in the upper oxycline. A secondary nitrite maximum (up to 10 μM) was found in the anoxic layer. A nitrite concentration minimum occurred at the oxic-anoxic interface just below the upper oxycline. For the sources of nitrite, highest rates of ammonium oxidation and nitrate reduction were detected in the upper oxycline, where both nitrite and oxygen concentrations were low. Lower rates of nitrite production were detected within the layer of secondary nitrite maximum. For the sinks of nitrite, the rates of anammox, denitrification and nitrite oxidation were the highest just below the oxic-anoxic interface. Low nitrite consumption rates were also detected within the layer of the secondary nitrite maximum. The imbalances between nitrite production and consumption rates help to explain the distribution of nitrite in the water column. The primary nitrite maximum in the upper oxycline is consistent with ammonium oxidation exceeding nitrite oxidation. Nitrite consumption rates exceeding rates of nitrite production result in the low nitrite concentration at the oxic-anoxic interface. Within the secondary nitrite maximum in the anoxic layer, production and consumption of nitrite are equivalent within measurement error. These low turnover rates suggest the stability of the nitrite pool in the secondary nitrite maximum over long time scales (decades to millennial). These data could be implemented into biogeochemical models to decipher the origin and the evolution of nitrite distribution in the OMZs.

Evaluating the Impact of Changes in Oceanic Dissolved Oxygen on Marine Nitrous Oxide

NASA Astrophysics Data System (ADS)

Suntharalingam, Parvadha; Buitenhuis, Erik; Schmidtko, Sunke; Andrews, Oliver; LeQuere, Corinne

2013-04-01

Emissions of the greenhouse gas nitrous-oxide (N2O) from oceanic oxygen minimum zones (OMZs) in the Equatorial Pacific and Northwest Indian Ocean are believed to provide a significant portion of the global oceanic flux to the atmosphere. Mechanisms of marine N2O production and consumption in these regions display significant sensitivity to ambient oxygen, with high yields at low oxygen levels (O2 < 50 micromol/L), and N2O depletion via denitrification in anoxic zones. These OMZ regions display large gradients in sub-surface N2O, and high rates of N2O turnover that far exceed those observed in the open ocean. Recent studies have suggested that possible expansion of oceanic OMZs in a warming climate, could lead to significant changes in N2O emissions from these zones. In this analysis we employ a global ocean biogeochemistry model (NEMO-PlankTOM), which includes representation of the marine N2O cycle, to explore the impact of changes in dissolved oxygen on the ocean-atmosphere N2O flux. We focus on the period 1960-2000, and evaluate the impact of estimated changes in ocean oxygen from two alternative sources : (a) the observationally-based upper-ocean oxygen distributions and trends of Stramma et al. [2012]; (b) simulated oxygen distributions and temporal variations from a set of CMIP5 Earth System models. We will inter-compare the oceanic N2O estimates derived from these alternative scenarios of ocean de-oxygenation. We will also discuss the implications of our results for the ability to reliably predict changes in N2O emissions under potential expansion of oceanic OMZs, particularly in view of the recently noted discrepancies between observed and modeled trends in oceanic oxygen by Stramma et al. [2012].

Effect of oxygen minimum zone formation on communities of marine protists.

PubMed

Orsi, William; Song, Young C; Hallam, Steven; Edgcomb, Virginia

2012-08-01

Changes in ocean temperature and circulation patterns compounded by human activities are leading to oxygen minimum zone (OMZ) expansion with concomitant alteration in nutrient and climate active trace gas cycling. Here, we report the response of microbial eukaryote populations to seasonal changes in water column oxygen-deficiency using Saanich Inlet, a seasonally anoxic fjord on the coast of Vancouver Island British Columbia, as a model ecosystem. We combine small subunit ribosomal RNA gene sequencing approaches with multivariate statistical methods to reveal shifts in operational taxonomic units during successive stages of seasonal stratification and renewal. A meta-analysis is used to identify common and unique patterns of community composition between Saanich Inlet and the anoxic/sulfidic Cariaco Basin (Venezuela) and Framvaren Fjord (Norway) to show shared and unique responses of microbial eukaryotes to oxygen and sulfide in these three environments. Our analyses also reveal temporal fluctuations in rare populations of microbial eukaryotes, particularly anaerobic ciliates, that may be of significant importance to the biogeochemical cycling of methane in OMZs. Eukaryotic 18S rRNA gene sequences recovered from the Saanich Inlet water column on were deposited in Genbank under accession numbers HQ864863–HQ871151.

Metabolic potential and in situ activity of marine Marinimicrobia bacteria in an anoxic water column.

PubMed

Bertagnolli, Anthony D; Padilla, Cory C; Glass, Jennifer B; Thamdrup, Bo; Stewart, Frank J

2017-11-01

Marinimicrobia bacteria are widespread in subeuphotic areas of the oceans and particularly abundant in oxygen minimum zones (OMZs). Information on Marinimicrobia metabolism is sparse, making the biogeochemical influence of this group challenging to predict. Here, metagenome-assembled genomes representing Marinimicrobia subgroups PN262000N21 and ARCTIC96B-7 were retrieved to near completion (97% and 94%) from OMZ metagenomes, with contamination (14.1%) observed only in ARCTIC96B-7. Genes for aerobic carbon monoxide (CO) oxidation, polysulfide metabolism and hydrogen utilization were identified only in PN262000N21, while genes for partial denitrification occurred in both genomes. Transcripts mapping to these genomes increased from <0.3% of total mRNA from the oxic zone to a max of 22% under anoxia. ARCTIC96B-7 transcript representation decreased an order of magnitude from non-sulfidic to sulfidic depths. In contrast, PN262000N21 representation was relatively constant throughout the OMZ, although transcripts encoding sulfur-utilizing proteins, including sulfur transferases, were enriched at sulfidic depths. PN262000N21 transcripts encoding a protein with fibronectin domains similar to those in cellulosome-producing bacteria were also abundant, suggesting a potential for high molecular weight carbon cycling. These data provide omic-level descriptions of metabolic potential and activity in OMZ-associated Marinimicrobia, suggesting differentiation between subgroups with roles in carbon and dissimilatory inorganic nitrogen and sulfur cycling. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

Live (Rose Bengal stained) foraminiferal faunas from the northern Arabian Sea: faunal succession within and below the OMZ

NASA Astrophysics Data System (ADS)

Caulle, C.; Koho, K. A.; Mojtahid, M.; Reichart, G. J.; Jorissen, F. J.

2014-02-01

Live (Rose Bengal stained) benthic foraminifera from the Murray Ridge, within and below the northern Arabian Sea oxygen minimum zone (OMZ), were studied in order to determine the relationship between faunal composition, bottom water oxygenation (BWO), pore water chemistry and organic matter (organic carbon and phytopigment) distribution. A series of multicores were recovered from a ten-station oxygen (BWO: 2-78 μM) and bathymetric (885-3010 m depth) transect during the winter monsoon in January 2009. Foraminifera were investigated from three different size fractions (63-125 μm, 125-150 μm and >150 μm). The larger foraminifera (>125 μm) were strongly dominated by agglutinated species (e.g. Reophax spp.). In contrast, in the 63-125 μm fraction, calcareous taxa were more abundant, especially in the core of the OMZ. On the basis of a principal components analysis, three foraminiferal groups were identified and correlated to the environmental parameters by canonical correspondence analysis. The faunas from the shallowest stations, in the core of the OMZ (BWO: 2 μM), were composed of "low oxygen" species, typical of the Arabian Sea OMZ (e.g. Rotaliatinopsis semiinvoluta, Praeglobobulimina sp., Bulimina exilis, Uvigerina peregrina type parva). These taxa are adapted to the very low BWO conditions and to high phytodetritus supplies. The transitional group, typical for the lower part of the OMZ (BWO: 5-16 μM), is composed of species that are tolerant as well to low-oxygen concentrations, but may be less critical with respect to organic supplies (e.g. Globocassidulina subglobosa, Ehrenbergina trigona). Below the OMZ (BWO: 26-78 μM), where food availability is more limited and becomes increasingly restricted to surficial sediments, cosmopolitan calcareous taxa were present, such as Bulimina aculeata, Melonis barleeanus, Uvigerina peregrina and Epistominella exigua. Miliolids were uniquely observed in this last zone, reflecting the higher BWO and/or lower organic input. At these deeper sites, the faunas exhibit a clear succession of superficial, intermediate and deep infaunal microhabitats, which can be linked to the deeper oxygen and nitrate penetration into the sediment.

A compendium of multi-omic sequence information from the Saanich Inlet water column

DOE PAGES

Hawley, Alyse K.; Torres-Beltran, Monica; Zaikova, Elena; ...

2017-10-31

Microbial communities play vital roles in earth’s geochemical cycles. Within marine oxygen minimum zones (OMZs) gradients of oxygen, nitrate and sulfide create redox gradients that drive biogeochemical cycling of carbon, nitrogen and sulphur. Climate-change induced expansion and intensification of OMZs and associated biogeochemical activities has significant implications for green house gas production i.e. nitrous oxide and methane. Next generation sequencing technologies have enabled observations of changes in microbial community structure and expression of RNA and protein along these redox gradients within OMZs. Here, we present a multi-omic time series dataset from Saanich Inlet spanning six years, including high spatial resolutionmore » small subunit ribosomal RNA tags, metagenomes, metatranscriptomes, and metaproteomes. As a result, this compendium provides paired multi-omic datasets over multiple time points providing a basis for exploring shifts in microbial community interactions and regulation of metabolic activities both along redox gradients and over time with implications for global climate models.« less

A compendium of multi-omic sequence information from the Saanich Inlet water column

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hawley, Alyse K.; Torres-Beltran, Monica; Zaikova, Elena

Microbial communities play vital roles in earth’s geochemical cycles. Within marine oxygen minimum zones (OMZs) gradients of oxygen, nitrate and sulfide create redox gradients that drive biogeochemical cycling of carbon, nitrogen and sulphur. Climate-change induced expansion and intensification of OMZs and associated biogeochemical activities has significant implications for green house gas production i.e. nitrous oxide and methane. Next generation sequencing technologies have enabled observations of changes in microbial community structure and expression of RNA and protein along these redox gradients within OMZs. Here, we present a multi-omic time series dataset from Saanich Inlet spanning six years, including high spatial resolutionmore » small subunit ribosomal RNA tags, metagenomes, metatranscriptomes, and metaproteomes. As a result, this compendium provides paired multi-omic datasets over multiple time points providing a basis for exploring shifts in microbial community interactions and regulation of metabolic activities both along redox gradients and over time with implications for global climate models.« less

Combined climate- and prey-mediated range expansion of Humboldt squid (Dosidicus gigas), a large marine predator in the California Current System.

PubMed

Stewart, Julia S; Hazen, Elliott L; Bograd, Steven J; Byrnes, Jarrett E K; Foley, David G; Gilly, William F; Robison, Bruce H; Field, John C

2014-06-01

Climate-driven range shifts are ongoing in pelagic marine environments, and ecosystems must respond to combined effects of altered species distributions and environmental drivers. Hypoxic oxygen minimum zones (OMZs) in midwater environments are shoaling globally; this can affect distributions of species both geographically and vertically along with predator-prey dynamics. Humboldt (jumbo) squid (Dosidicus gigas) are highly migratory predators adapted to hypoxic conditions that may be deleterious to their competitors and predators. Consequently, OMZ shoaling may preferentially facilitate foraging opportunities for Humboldt squid. With two separate modeling approaches using unique, long-term data based on in situ observations of predator, prey, and environmental variables, our analyses suggest that Humboldt squid are indirectly affected by OMZ shoaling through effects on a primary food source, myctophid fishes. Our results suggest that this indirect linkage between hypoxia and foraging is an important driver of the ongoing range expansion of Humboldt squid in the northeastern Pacific Ocean. © 2014 John Wiley & Sons Ltd.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Roux, Simon; Hawley, Alyse K.; Torres Beltran, Monica

Viruses modulate microbial communities and alter ecosystem functions. However, due to cultivation bottlenecks, specific virus–host interaction dynamics remain cryptic. In this study, we examined 127 single-cell amplified genomes (SAGs) from uncultivated SUP05 bacteria isolated from a model marine oxygen minimum zone (OMZ) to identify 69 viral contigs representing five new genera within dsDNA Caudovirales and ssDNA Microviridae. Infection frequencies suggest that ∼1/3 of SUP05 bacteria is viral-infected, with higher infection frequency where oxygen-deficiency was most severe. Observed Microviridae clonality suggests recovery of bloom-terminating viruses, while systematic co-infection between dsDNA and ssDNA viruses posits previously unrecognized cooperation modes. Analyses of 186more » microbial and viral metagenomes revealed that SUP05 viruses persisted for years, but remained endemic to the OMZ. Finally, identification of virus-encoded dissimilatory sulfite reductase suggests SUP05 viruses reprogram their host's energy metabolism. Together, these results demonstrate closely coupled SUP05 virus–host co-evolutionary dynamics with the potential to modulate biogeochemical cycling in climate-critical and expanding OMZs.« less

Dead zone or oasis in the open ocean? Zooplankton distribution and migration in low-oxygen modewater eddies

NASA Astrophysics Data System (ADS)

Hauss, Helena; Christiansen, Svenja; Schütte, Florian; Kiko, Rainer; Edvam Lima, Miryam; Rodrigues, Elizandro; Karstensen, Johannes; Löscher, Carolin R.; Körtzinger, Arne; Fiedler, Björn

2016-04-01

The eastern tropical North Atlantic (ETNA) features a mesopelagic oxygen minimum zone (OMZ) at approximately 300-600 m depth. Here, oxygen concentrations rarely fall below 40 µmol O2 kg-1, but are expected to decline under future projections of global warming. The recent discovery of mesoscale eddies that harbour a shallow suboxic (< 5 µmol O2 kg-1) OMZ just below the mixed layer could serve to identify zooplankton groups that may be negatively or positively affected by ongoing ocean deoxygenation. In spring 2014, a detailed survey of a suboxic anticyclonic modewater eddy (ACME) was carried out near the Cape Verde Ocean Observatory (CVOO), combining acoustic and optical profiling methods with stratified multinet hauls and hydrography. The multinet data revealed that the eddy was characterized by an approximately 1.5-fold increase in total area-integrated zooplankton abundance. At nighttime, when a large proportion of acoustic scatterers is ascending into the upper 150 m, a drastic reduction in mean volume backscattering (Sv) at 75 kHz (shipboard acoustic Doppler current profiler, ADCP) within the shallow OMZ of the eddy was evident compared to the nighttime distribution outside the eddy. Acoustic scatterers avoided the depth range between approximately 85 to 120 m, where oxygen concentrations were lower than approximately 20 µmol O2 kg-1, indicating habitat compression to the oxygenated surface layer. This observation is confirmed by time series observations of a moored ADCP (upward looking, 300 kHz) during an ACME transit at the CVOO mooring in 2010. Nevertheless, part of the diurnal vertical migration (DVM) from the surface layer to the mesopelagic continued through the shallow OMZ. Based upon vertically stratified multinet hauls, Underwater Vision Profiler (UVP5) and ADCP data, four strategies followed by zooplankton in response to in response to the eddy OMZ have been identified: (i) shallow OMZ avoidance and compression at the surface (e.g. most calanoid copepods, euphausiids); (ii) migration to the shallow OMZ core during daytime, but paying O2 debt at the surface at nighttime (e.g. siphonophores, Oncaea spp., eucalanoid copepods); (iii) residing in the shallow OMZ day and night (e.g. ostracods, polychaetes); and (iv) DVM through the shallow OMZ from deeper oxygenated depths to the surface and back. For strategy (i), (ii) and (iv), compression of the habitable volume in the surface may increase prey-predator encounter rates, rendering zooplankton and micronekton more vulnerable to predation and potentially making the eddy surface a foraging hotspot for higher trophic levels. With respect to long-term effects of ocean deoxygenation, we expect avoidance of the mesopelagic OMZ to set in if oxygen levels decline below approximately 20 µmol O2 kg-1. This may result in a positive feedback on the OMZ oxygen consumption rates, since zooplankton and micronekton respiration within the OMZ as well as active flux of dissolved and particulate organic matter into the OMZ will decline.

Comparative geochemistry of Indian margin (Arabian Sea) sediments: Estuary to continental slope.

NASA Astrophysics Data System (ADS)

Cowie, Greg; Mowbray, Stephen; Kurian, Siby; Sarkar, Amit; White, Carol; Anderson, Amy; Vergnaud, Bianca; Johnstone, Gisele; Brear, Samuel; Woulds, Clare; Naqvi, Wajih; Kitazato, Hiroshi

2014-05-01

Factors controlling the distribution of organic matter in the Arabian Sea have been the subject of much research and debate ever since organic-rich slope deposits were associated with the mid-water oxygen minimum zone (OMZ) However, the debate remains open, and numerous interacting factors have been invoked as important controls. A limitation of most previous studies is that they have been restricted to limited portions of the margin, and have not included molecular-level tracers that allow distinction of organic matter (OM) source and degradation state as factors in OM distribution. We report results from sites across the Indian margin of the Arabian Sea, which were analysed for carbon and nitrogen compositions (elemental and isotopic), grain size and indices of OM source and degradation state. Site locations ranged from the Mandovi/Zuari estuaries to depths of ~2000m on the continental slope, thus spanning both the semi-permanent OMZ on the upper slope (~200-1300m) and the seasonal hypoxic zone that impinges on the shelf. Source indices showed mixed marine and terrigenous OM within the estuaries, but overwhelming predominance (80%+) of marine OM on the shelf and slope, even in nearshore deposits. Thus, riverine OM is heavily diluted or efficiently remineralised within or immediately offshore of the estuaries. Any terrigenous OM that is exported appears to be retained in nearshore muds; lignin phenols indicate that the small terrigenous OM content of slope sediments is of different origin, potentially from rivers to the north. Organic C contents of surface shelf and slope sediments varied from <0.5 wt% in relict shelf sands to a maximum of >7 wt% at upper slope sites within the OMZ, then decreasing to ≤1wt% at 2000m. However, major variability (~5 wt%) occured within the OMZ at sites with near-identical depths and bottom-water oxygen. A strong relationship between organic C and grain size was seen for OMZ sediments, but lower C loadings were found for sites on the shelf and below the OMZ. Diagenetic indices confirmed that lower C content below the OMZ is associated with greater extent of OM degradation, but that C-poor shelf sediments are not consistently more degraded than those within the OMZ. Together, results indicate that OM enrichment on the upper slope, where it occurs, can be explained by winnowing or other physical processes on the shelf combined with progressive OM degradation with increasing oxygen exposure below the OMZ. Reduced oxygen exposure may contribute to observed OM enrichment with the OMZ, but hydrodynamic processes are the overriding control on sediment OM distribution, even within the OMZ.

The second species of Gromia (Protista) from the deep sea: its natural history and association with the Pakistan margin oxygen minimum zone.

PubMed

Gooday, Andrew J; Bowser, Samuel S

2005-06-01

We describe a gromiid protist Gromia pyriformis sp. nov., from bathyal depths on the Pakistan margin (NE Arabian Sea), an area characterised by a well-developed Oxygen Minimum Zone (OMZ). The new species is smaller (length usually <1 mm) than the only other described deep-sea gromiid species (Gromia sphaerica) or the well-known coastal species Gromia oviformis. Its identification as a gromiid is based on the test-wall ultrastructure. This includes (i) an outer wall (165-300 nm thick) limited by an electron-opaque layer and perforated by pore structures which typically extend through its entire thickness, and (ii) inner "honeycomb membrane" structures which form a discontinuous sheet (18-20 nm thick) lying parallel to the outer wall. An outermost glycocalyx (approximately 75 nm thick), not observed in other gromiid species, is also present and imparts a finely granular appearance to the outer test surface, as seen by Scanning Electron Microscopy (SEM). Numerous rod-shaped prokaryotes are attached to the exterior of the glycocalyx. Gromia pyriformis sp. nov. typically occurs above the sediment-water interface, attached to the large arborescent foraminiferan Pelosina sp. It is confined to a very narrow bathymetric zone (approximately 1000 m water depth) in the lower portion of the OMZ, where bottom-water oxygen concentrations are approximately 0.2 ml l(-1).

Benthic biological and biogeochemical patterns and processes across an oxygen minimum zone (Pakistan margin, NE Arabian Sea)

NASA Astrophysics Data System (ADS)

Cowie, Gregory L.; Levin, Lisa A.

2009-03-01

Oxygen minimum zones (OMZs) impinging on continental margins present sharp gradients ideal for testing environmental factors thought to influence C cycling and other benthic processes, and for identifying the roles that biota play in these processes. Here we introduce the objectives and initial results of a multinational research program designed to address the influences of water depth, the OMZ (˜150-1300 m), and organic matter (OM) availability on benthic communities and processes across the Pakistan Margin of the Arabian Sea. Hydrologic, sediment, and faunal characterizations were combined with in-situ and shipboard experiments to quantify and compare biogeochemical processes and fluxes, OM burial efficiency, and the contributions of benthic communities, across the OMZ. In this introductory paper, we briefly review previous related work in the Arabian Sea, building the rationale for integrative biogeochemical and ecological process studies. This is followed by a summary of individual volume contributions and a brief synthesis of results. Five primary stations were studied, at 140, 300, 940, 1200 and 1850 m water depth, with sampling in March-May (intermonsoon) and August-October (late-to-postmonsoon) 2003. Taken together, the contributed papers demonstrate distinct cross-margin gradients, not only in oxygenation and sediment OM content, but in benthic community structure and function, including microbial processes, the extent of bioturbation, and faunal roles in C cycling. Hydrographic studies demonstrated changes in the intensity and extent of the OMZ during the SW monsoon, with a shoaling of the upper OMZ boundary that engulfed the previously oxygenated 140-m site. Oxygen profiling and microbial process rate determinations demonstrated dramatic differences in oxygen penetration and consumption across the margin, and in the relative importance of anaerobic processes, but surprisingly little seasonal change. A broad maximum in sediment OM content occurred on the upper slope, roughly coincident with the OMZ; but the otherwise poor correlation with bottom-water oxygen concentrations indicated that other factors are important in determining sediment OM distributions. Downcore profiles generally showed little clear evidence of in-situ OM alteration, and there was little sign of OM enrichment resulting from the southwest monsoon in sediments collected in the late-to-postmonsoon sampling. This is interpreted to be due to rapid cycling of labile OM. Organic geochemical studies confirmed that sediment OM is overwhelmingly of marine origin across the margin, but also that it is heavily altered, with only small changes in degradation state across the OMZ. More negative stable C isotopic compositions in surficial sediments at hypoxic sites within the OMZ core are attributed to a chemosynthetic bacterial imprint. Dramatic changes in benthic community structure occurred across the lower OMZ transition, apparently related to OM availability and quality as well as to DO concentrations. High-resolution sampling, biomarkers and isotope tracer studies revealed that oxygen availability appears to exert threshold-type controls on benthic community structure and early faunal C processing. Biomarker studies also provided evidence of faunal influence on sediment OM composition. Together, the results offer strong evidence that benthic fauna at sites across the margin play important roles in the early cycling of sediment OM through differential feeding and bioturbation activities.

Flux and accumulation of sedimentary particles off the continental slope of Pakistan: a comparison of water column and seafloor estimates from the oxygen minimum zone, NE Arabian Sea

NASA Astrophysics Data System (ADS)

Schulz, H.; von Rad, U.

2013-07-01

Due to the lack of bioturbation, the laminated muds from the oxygen-minimum zone (OMZ) off Pakistan provide a unique opportunity to precisely determine the vertical and lateral sediment fluxes in the near shore part of the northeastern Arabian Sea, and to explore the effects of the margin topography and the low oxygen conditions on the accumulation of organic matter and other particles. West of Karachi, in the Hab river area of EPT and WPT (Eastern and Western PAKOMIN Traps), 16 short sediment profiles from water depths between 250 m and 1970 m on a depth transect crossing the OMZ (~ 120 to ~ 1200 m water depth) were investigated, and correlated on the basis of a thick, light-gray- to reddish-colored turbidite layer. Varve counting yielded a date for this layer of AD 1905 to 1888. We adopted the young age which agrees with 210Pb- dating, and used this isochronous stratigraphic marker bed to calculate sediment accumulation rates, that we could directly compare with the flux rates from the sediment traps installed within the water column above. All traps in the area show exceptionally high, pulsed winter fluxes of up to 5000 mg m-2 d-1 in this margin environment. The lithic flux at the sea floor is as high as 4000 mg m-2 d-1 , and agrees remarkably well with the bulk winter flux of material. This holds as well for the individual bulk components (organic carbon, calcium carbonate, opal, lithic fraction). However, the high winter flux events (HFE) by their extreme mass of remobilized matter terminated the recording in the shallow traps by clogging the funnels. Based on our comparisons, we argue that HFE for the past 5000 yr most likely occurred as regular events within the upper OMZ off Pakistan. Coarse fraction and foraminiferal accumulation rates from sediment surface samples along the Hab transect show distribution patterns that seem to be a function of water depth and distance from the shelf. Some of these sediment fractions show sudden shifts at the lower boundary of the OMZ. However, the potential effect of the OMZ on carbon preservation in the area would by masked by high mass of fine-grained matter laterally advected, and by the pulsed nature of the resuspension events.

Nano- and Macroscale Responses of the Deep Pink Sea Urchin, Strongylocentrotus fragilis, to Multiple Stressors Associated with the Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Sato, K.; Jung, J. Y.; Levin, L. A.

2016-02-01

The rapid pace of deoxygenation and ocean acidification associated with anthropogenic climate change on upwelling margins will have differing effects on marine species from the population level down to the nanoscale. Driven by the understudied effects of climate change in the deep sea, we address the question, how will dominant echinoid urchins respond to future changes in multiple stressors (i.e. ocean acidification, deoxygenation, and shoaling of hypoxic water and calcium carbonate saturation horizons) on the southern California continental slope? Samples of the sea urchin, Strongylocentrotus fragilis, were collected along gradients of multiple hydrographic variables and analyzed for phenotypic variation with respect to multiple climate change stressors (oxygen, pH, and temperature). We compare fitness traits of S. fragilis collected along the continental slope and through the Oxygen Minimum Zone (OMZ), which include growth rate, morphology, and reproductive output, in addition to nanoscale structural and biomechanical test properties. Our results indicate that growth rate of S. fragilis is directly correlated with dissolved oxygen and pH, but not depth or temperature. Reproductive output, as measured by a standard gonad index, was found to be sensitive at the OMZ core (pH 7.40; O2 0.25 mL/L), which suggests a nonlinear response to chemical stressors. Preliminary analysis of mineral density in test pieces imaged using micro- and nano- computed tomography indicates exposure to conditions in the OMZ reduces calcification. This improved understanding of how continental margin urchins differ along natural physicochemical gradients will provide modern-day insight into the threshold tolerances of species to multiple stressors and will help guide future manipulation experiments as well as fisheries and spatial management.

Oxygen distribution and aerobic respiration in the north and south eastern tropical Pacific oxygen minimum zones

NASA Astrophysics Data System (ADS)

Tiano, Laura; Garcia-Robledo, Emilio; Dalsgaard, Tage; Devol, Allan H.; Ward, Bess B.; Ulloa, Osvaldo; Canfield, Donald E.; Peter Revsbech, Niels

2014-12-01

Highly sensitive STOX O2 sensors were used for determination of in situ O2 distribution in the eastern tropical north and south Pacific oxygen minimum zones (ETN/SP OMZs), as well as for laboratory determination of O2 uptake rates of water masses at various depths within these OMZs. Oxygen was generally below the detection limit (few nmol L-1) in the core of both OMZs, suggesting the presence of vast volumes of functionally anoxic waters in the eastern Pacific Ocean. Oxygen was often not detectable in the deep secondary chlorophyll maximum found at some locations, but other secondary maxima contained up to 0.4 μmol L-1. Directly measured respiration rates were high in surface and subsurface oxic layers of the coastal waters, reaching values up to 85 nmol L-1 O2 h-1. Substantially lower values were found at the depths of the upper oxycline, where values varied from 2 to 33 nmol L-1 O2 h-1. Where secondary chlorophyll maxima were found the rates were higher than in the oxic water just above. Incubation times longer than 20 h, in the all-glass containers, resulted in highly increased respiration rates. Addition of amino acids to the water from the upper oxycline did not lead to a significant initial rise in respiration rate within the first 20 h, indicating that the measurement of respiration rates in oligotrophic Ocean water may not be severely affected by low levels of organic contamination during sampling. Our measurements indicate that aerobic metabolism proceeds efficiently at extremely low oxygen concentrations with apparent half-saturation concentrations (Km values) ranging from about 10 to about 200 nmol L-1.

The Paleoceanography of the Bering Sea During the Last Glacial Cycle

DTIC Science & Technology

2006-02-01

Stabeno, 1998). Water from the Bering (1995) inferred that the oxygen minimum zone Sea is relatively low salinity and rich in nutrients, (OMZ...fresher, warmer, and enriched in nutrients, particu- planktonic species Neogloboquadrina pachyderma larly silicate, which dissolves from opal- rich seafloor...2- rich 33 North Pacific intermediate water (NPIW), (2) decrease in the [02] of newly-formed NPIW without a change in ventilation rate (Crusius et al

Global distribution of naturally occurring marine hypoxia on continental margins

NASA Astrophysics Data System (ADS)

Helly, John J.; Levin, Lisa A.

2004-09-01

Hypoxia in the ocean influences biogeochemical cycling of elements, the distribution of marine species and the economic well being of many coastal countries. Previous delineations of hypoxic environments focus on those in enclosed seas where hypoxia may be exacerbated by anthropogenically induced eutrophication. Permanently hypoxic water masses in the open ocean, referred to as oxygen minimum zones, impinge on a much larger seafloor surface area along continental margins of the eastern Pacific, Indian and western Atlantic Oceans. We provide the first global quantification of naturally hypoxic continental margin floor by determining upper and lower oxygen minimum zone depth boundaries from hydrographic data and computing the area between the isobaths using seafloor topography. This approach reveals that there are over one million km 2 of permanently hypoxic shelf and bathyal sea floor, where dissolved oxygen is <0.5 ml l -1; over half (59%) occurs in the northern Indian Ocean. We also document strong variation in the intensity, vertical position and thickness of the OMZ as a function of latitude in the eastern Pacific Ocean and as a function of longitude in the northern Indian Ocean. Seafloor OMZs are regions of low biodiversity and are inhospitable to most commercially valuable marine resources, but support a fascinating array of protozoan and metazoan adaptations to hypoxic conditions.

Metabolic versatility of a novel N2 -fixing Alphaproteobacterium isolated from a marine oxygen minimum zone.

PubMed

Martínez-Pérez, Clara; Mohr, Wiebke; Schwedt, Anne; Dürschlag, Julia; Callbeck, Cameron M; Schunck, Harald; Dekaezemacker, Julien; Buckner, Caroline R T; Lavik, Gaute; Fuchs, Bernhard M; Kuypers, Marcel M M

2018-02-01

The N 2 -fixing (diazotrophic) community in marine ecosystems is dominated by non-cyanobacterial microorganisms. Yet, very little is known about their identity, function and ecological relevance due to a lack of cultured representatives. Here we report a novel heterotrophic diazotroph isolated from the oxygen minimum zone (OMZ) off Peru. The new species belongs to the genus Sagittula (Rhodobacteraceae, Alphaproteobacteria) and its capability to fix N 2 was confirmed in laboratory experiments. Genome sequencing revealed that it is a strict heterotroph with a high versatility in substrate utilization and energy acquisition mechanisms. Pathways for sulfide oxidation and nitrite reduction to nitrous oxide are encoded in the genome and might explain the presence throughout the Peruvian OMZ. The genome further indicates that this novel organism could be in direct interaction with other microbes or particles. NanoSIMS analyses were used to compare the metabolic potential of S. castanea with single-cell activity in situ; however, N 2 fixation by this diazotroph could not be detected at the isolation site. While the biogeochemical impact of S. castanea is yet to be resolved, its abundance and widespread distribution suggests that its potential to contribute to the marine N input could be significant at a larger geographical scale. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics

DOE PAGES

Roux, Simon; Hawley, Alyse K.; Torres Beltran, Monica; ...

2014-08-29

Viruses modulate microbial communities and alter ecosystem functions. However, due to cultivation bottlenecks, specific virus–host interaction dynamics remain cryptic. In this study, we examined 127 single-cell amplified genomes (SAGs) from uncultivated SUP05 bacteria isolated from a model marine oxygen minimum zone (OMZ) to identify 69 viral contigs representing five new genera within dsDNA Caudovirales and ssDNA Microviridae. Infection frequencies suggest that ∼1/3 of SUP05 bacteria is viral-infected, with higher infection frequency where oxygen-deficiency was most severe. Observed Microviridae clonality suggests recovery of bloom-terminating viruses, while systematic co-infection between dsDNA and ssDNA viruses posits previously unrecognized cooperation modes. Analyses of 186more » microbial and viral metagenomes revealed that SUP05 viruses persisted for years, but remained endemic to the OMZ. Finally, identification of virus-encoded dissimilatory sulfite reductase suggests SUP05 viruses reprogram their host's energy metabolism. Together, these results demonstrate closely coupled SUP05 virus–host co-evolutionary dynamics with the potential to modulate biogeochemical cycling in climate-critical and expanding OMZs.« less

Metabolic suppression during protracted exposure to hypoxia in the jumbo squid, Dosidicus gigas, living in an oxygen minimum zone.

PubMed

Seibel, Brad A; Häfker, N Sören; Trübenbach, Katja; Zhang, Jing; Tessier, Shannon N; Pörtner, Hans-Otto; Rosa, Rui; Storey, Kenneth B

2014-07-15

The jumbo squid, Dosidicus gigas, can survive extended forays into the oxygen minimum zone (OMZ) of the Eastern Pacific Ocean. Previous studies have demonstrated reduced oxygen consumption and a limited anaerobic contribution to ATP production, suggesting the capacity for substantial metabolic suppression during hypoxic exposure. Here, we provide a more complete description of energy metabolism and explore the expression of proteins indicative of transcriptional and translational arrest that may contribute to metabolic suppression. We demonstrate a suppression of total ATP demand under hypoxic conditions (1% oxygen, PO2 =0.8 kPa) in both juveniles (52%) and adults (35%) of the jumbo squid. Oxygen consumption rates are reduced to 20% under hypoxia relative to air-saturated controls. Concentrations of arginine phosphate (Arg-P) and ATP declined initially, reaching a new steady state (~30% of controls) after the first hour of hypoxic exposure. Octopine began accumulating after the first hour of hypoxic exposure, once Arg-P breakdown resulted in sufficient free arginine for substrate. Octopine reached levels near 30 mmol g(-1) after 3.4 h of hypoxic exposure. Succinate did increase through hypoxia but contributed minimally to total ATP production. Glycogenolysis in mantle muscle presumably serves to maintain muscle functionality and balance energetics during hypoxia. We provide evidence that post-translational modifications on histone proteins and translation factors serve as a primary means of energy conservation and that select components of the stress response are altered in hypoxic squids. Reduced ATP consumption under hypoxia serves to maintain ATP levels, prolong fuel store use and minimize the accumulation of acidic intermediates of anaerobic ATP-generating pathways during prolonged diel forays into the OMZ. Metabolic suppression likely limits active, daytime foraging at depth in the core of the OMZ, but confers an energetic advantage over competitors that must remain in warm, oxygenated surface waters. Moreover, the capacity for metabolic suppression provides habitat flexibility as OMZs expand as a result of climate change. © 2014. Published by The Company of Biologists Ltd.

Response of benthic foraminifera to phytodetritus in the eastern Arabian Sea under low oxygen conditions

NASA Astrophysics Data System (ADS)

Enge, Annekatrin; Wukovits, Julia; Wanek, Wolfgang; Watzka, Margarete; Witte, Ursula; Hunter, William; Heinz, Petra

2016-04-01

At water depths between 100 and 1500 m a permanent Oxygen Minimum Zone (OMZ) impinges on the sea floor in the eastern Arabian Sea, exposing benthic organisms to anoxic to suboxic conditions. The flux of organic matter to the sea floor is relatively high at these depths but displays seasonal variation. Deposition of relatively fresh phytodetrital material (phytoplankton remains) can occur within a short period of time after monsoon periods. Several organism groups including foraminifera are involved to different extent in the processing of phytodetritus in the OMZs of the northern Arabian Sea. A series of in situ feeding experiments were performed to study the short-term processing (< 11 days) of organic carbon, nitrogen and nutritional demands of foraminifera at different oxygen concentrations on the continental margin in the eastern Arabian Sea. For the experiments, a single pulse of isotopically labeled phytodetritus was added to the sediment along a depth transect (540-1100 m) on the Indian Margin, covering the OMZ core and the lower OMZ boundary region. Uptake of phytodetritus within 4 days shows the relevance of phytodetritus as food source for foraminifera. Lower content of phytodetrital carbon recorded in foraminifera from more oxygenated depths shows greater food uptake by foraminifera in the OMZ core than in the OMZ boundary region. The foraminiferal assemblage living under almost anoxic conditions in the OMZ core is dominated by species typically found in eutroph environments (such as Uvigerinids) that are adapted to high flux of organic matter. The elevated carbon uptake can also result from missing food competition by macrofauna or from greater energy demand in foraminifera to sustain metabolic processes under hypoxic stress. Variable levels and ratios of phytodetrital carbon and nitrogen indicate specific nutritional demands and storage of food-derived nitrogen in some foraminifera species under near anoxia where the mean phytodetrital nitrogen content in foraminifera was elevated. In summary, foraminifera dominate the short-term processing of phytodetritus by fauna in the OMZ core but are less important in the lower OMZ boundary region of the Indian margin as a result of biological interactions and changes in the distribution of individual foraminiferal species.

Reproductive patterns in demersal crustaceans from the upper boundary of the OMZ off north-central Chile

NASA Astrophysics Data System (ADS)

Gallardo, María de los Ángeles; González López, Andrés E.; Ramos, Marcel; Mujica, Armando; Muñoz, Praxedes; Sellanes, Javier; Yannicelli, Beatriz

2017-06-01

Pleuroncodes monodon (Crustacea: Munididae) supports one of the main trawling fisheries over the continental shelf off Chile between 25°S and 37°S within the upper boundary of the oxygen minimum zone (OMZ). Although the reproductive cycle of P. monodon has been described, the relationship between this key biological process and the variability of the OMZ has not been comprehensibly addressed neither for P. monodon nor for other OMZ resident species. In this study a set of 14 quasi-monthly oceanographic cruises carried out between June 2010 and November 2011 were conducted over the continental shelf off Coquimbo (30°S) to investigate the temporal variability of: i) dissolved oxygen concentration, temperature and chlorophyll-a at relevant depths ii) the presence and proportion of occurrence of P. monodon ovigerous females and juveniles from benthic trawls; iii) the presence of different stage larvae in the plankton, and iv) similar biological data for other species from the OMZ and shallower depths crustaceans. During summer months oxygen levels and bottom temperature were lower than in winter, while chlorophyll-a concentration was maximum in summer coinciding with an active (but not maximum) upwelling season. P. monodon maximum egg carrying occurred in winter during periods of increased oxygenation. Egg carrying females were never found at depths where oxygen concentration was below 0.5 ml L-1, while over 50% of the autumn and spring cohorts of juveniles occurred at oxygen concentrations below that level. The depth range occupied by ovigerous females was more restricted than the rest of the population and their depth of occurrence followed the variability of the upper OMZ. The larval release period of OMZ resident species extends over late winter and spring, and its main peak precedes that of coastal species (spring) and the spring-summer chlorophyll-a maximum. We propose that for OMZ resident species, brood carrying during warmer and more oxygenated conditions in the adult benthic environment, might favor embryonic development, so OMZ seasonal variability could be acting as a selective pressure to synchronize reproductive periods.

Ammonia oxidation rates and nitrification in the Arabian Sea

NASA Astrophysics Data System (ADS)

Newell, Silvia E.; Babbin, Andrew R.; Jayakumar, Amal; Ward, Bess B.

2011-12-01

Nitrification rates, as well as the relationships between rates and ammonia oxidizer abundance (both archaeal and bacterial), were investigated in the Arabian Sea. Ammonia oxidation rates were measured directly using 15N-NH4+stable isotope additions in gas-impermeable, trace metal clean trilaminate bags (500 mL) at in situ temperature. Tracer incubations were performed at three stations at depths above, below, and within the oxycline of the open-ocean oxygen minimum zone (OMZ). Ammonia oxidation rates were similar to previous open-ocean measurements, ranging from undetectable to 21.6 ± 0.1 nmol L-1 d-1. The highest rates at each station occurred at the primary nitrite maximum (above the OMZ), and rates were very low at depths greater than 900 m. The abundances of both ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) were estimated using theamoA gene by quantitative polymerase chain reaction (qPCR). Both AOA and AOB amoA were detected above, within, and below the OMZ, although the AOA were always more abundant than the AOB, by a factor of 35-216. Nitrification rates were not directly correlated to AOA or AOB amoA abundance. These rates offer new insight into the role of nitrification in the mesopelagic zone. The abundance of AOA amoA genes at 1000 m suggests that ˜50% of the microbial biomass could be autotrophic. Additionally, the integrated nitrification rate at depth implies that nitrification could consume most of the ammonium produced by the flux of organic carbon in the mesopelagic zone.

Balancing the (carbon) budget: Using linear inverse models to estimate carbon flows and mass-balance 13C:15N labelling experiments in low oxygen sediments.

NASA Astrophysics Data System (ADS)

Hunter, William Ross; Van Oevelen, Dick; Witte, Ursula

2013-04-01

Over 1 million km2 of seafloor experience permanent low-oxygen conditions within oxygen minimum zones (OMZs). OMZs are predicted to grow as a consequence of climate change, potentially affecting oceanic biogeochemical cycles. The Arabian Sea OMZ impinges upon the western Indian continental margin at bathyal depths (150 - 1500m) producing a strong depth dependent oxygen gradient at the sea floor. The influence of the OMZ upon the short term processing of organic matter by sediment ecosystems was investigated using in situ stable isotope pulse chase experiments. These deployed doses of 13C:15N labeled organic matter onto the sediment surface at four stations from across the OMZ (water depth 540 - 1100 m; [O2] = 0.35 - 15 μM). In order to prevent experimentally anoxia, the mesocosms were not sealed. 13C and 15N labels were traced into sediment, bacteria, fauna and 13C into sediment porewater DIC and DOC. However, the DIC and DOC flux to the water column could not be measured, limiting our capacity to obtain mass-balance for C in each experimental mesocosm. Linear Inverse Modeling (LIM) provides a method to obtain a mass-balanced model of carbon flow that integrates stable-isotope tracer data with community biomass and biogeochemical flux data from a range of sources. Here we present an adaptation of the LIM methodology used to investigate how ecosystem structure influenced carbon flow across the Indian margin OMZ. We demonstrate how oxygen conditions affect food-web complexity, affecting the linkages between the bacteria, foraminifera and metazoan fauna, and their contributions to benthic respiration. The food-web models demonstrate how changes in ecosystem complexity are associated with oxygen availability across the OMZ and allow us to obtain a complete carbon budget for the stationa where stable-isotope labelling experiments were conducted.

Dynamics and stoichiometry of nutrients and phytoplankton in waters influenced by the oxygen minimum zone in the eastern tropical Pacific

NASA Astrophysics Data System (ADS)

Franz, Jasmin; Krahmann, Gerd; Lavik, Gaute; Grasse, Patricia; Dittmar, Thorsten; Riebesell, Ulf

2012-04-01

The tropical South East Pacific is characterized by strong coastal upwelling on the narrow continental shelf and an intense oxygen minimum zone (OMZ) in the intermediate water layer. These hydrographic properties are responsible for a permanent supply of intermediate water masses to the surface rich in nutrients and with a remarkably low inorganic N:P stoichiometry. To investigate the impact of OMZ-influenced upwelling waters on phytoplankton growth, elemental and taxonomical composition we measured hydrographic and biogeochemical parameters along an east-west transect at 10°S in the tropical South East Pacific, stretching from the upwelling region above the narrow continental shelf to the well-stratified oceanic section of the eastern boundary regime. New production in the area of coastal upwelling was driven by large-sized phytoplankton (e.g. diatoms) with generally low N:P ratios (<16:1). While nitrate and phosphate concentrations were at levels not limiting phytoplankton growth along the entire transect, silicate depletion prohibited diatom growth further off-shore. A deep chlorophyll a maximum consisting of pico-/nano- (Synechococcus, flagellates) and microphytoplankton occurred within a pronounced thermocline in subsurface waters above the shelf break and showed intermediate N:P ratios close to Redfield proportions. High PON:POP (>20:1) ratios were observed in the stratified open ocean section of the transect, coinciding with the abundance of two strains of the pico-cyanobacterium Prochlorococcus; a high-light adapted strain in the surface layer and a low-light adapted strain occurring along the oxic-anoxic transition zone below the thermocline. Excess phosphate present along the entire transect did not appear to stimulate growth of nitrogen-fixing phytoplankton, as pigment fingerprinting did not indicate the presence of diazotrophic cyanobacteria at any of our sampling stations. Instead, a large fraction of the excess phosphate generated within the oxygen minimum zone was consumed by non-Redfield production of large phytoplankton in shelf surface waters.

Benthic foraminiferal trace metal uptake: a field calibration from the Arabia Sea Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Koho, K. A.; Reichart, G.-J.

2012-04-01

The Arabian Sea Oxygen Minimum Zone (OMZ) is sustained by high surface water productivity and relatively weak mid-depth water column ventilation. High primary productivity drives high respiration rates in the water column, causing severe oxygen depletion between ±150-1400 m water depths, with the oxygen concentrations falling below 2 μM in the core of the OMZ. Living (rose Bengal stained) benthic foraminifera were collected at 10-stations, covering a large bottom water oxygen concentration gradient from the Murray Ridge. This sub-marine ridge is located in the open marine environment of the Arabian Sea and thus not affected by large gradients in surface water productivity such as encountered at the continental margins. Since these sites thus receive similar organic fluxes, but are bathed in bottom waters with contrasting oxygen concentrations, pore water profiles mainly reflect bottom water oxygenation. The study sites represent a natural laboratory to investigate the impact of bottom water chemistry on trace metal incorporation in benthic foraminifera. Trace metal analyses by laser ablation ICP-MS allows detailed single chamber measurements of trace metal content, which can be related to in situ pore water geochemistry. Focus of this study is on redox sensitive trace metal (e.g. Mn, U) incorporation into foraminiferal test calcite in relation to pore water oxygen and carbonate chemistry.

Glacial-interglacial changes and Holocene variations in Arabian Sea denitrification

NASA Astrophysics Data System (ADS)

Gaye, Birgit; Böll, Anna; Segschneider, Joachim; Burdanowitz, Nicole; Emeis, Kay-Christian; Ramaswamy, Venkitasubramani; Lahajnar, Niko; Lückge, Andreas; Rixen, Tim

2018-01-01

At present, the Arabian Sea has a permanent oxygen minimum zone (OMZ) at water depths between about 100 and 1200 m. Active denitrification in the upper part of the OMZ is recorded by enhanced δ15N values in the sediments. Sediment cores show a δ15N increase during the middle and late Holocene, which is contrary to the trend in the other two regions of water column denitrification in the eastern tropical North and South Pacific. We calculated composite sea surface temperature (SST) and δ15N ratios in time slices of 1000 years of the last 25 kyr to better understand the reasons for the establishment of the Arabian Sea OMZ and its response to changes in the Asian monsoon system. Low δ15N values of 4-7 ‰ during the last glacial maximum (LGM) and stadials (Younger Dryas and Heinrich events) suggest that denitrification was inactive or weak during Pleistocene cold phases, while warm interstadials (ISs) had elevated δ15N. Fast changes in upwelling intensities and OMZ ventilation from the Antarctic were responsible for these strong millennial-scale variations during the glacial. During the entire Holocene δ15N values > 6 ‰ indicate a relatively stable OMZ with enhanced denitrification. The OMZ develops parallel to the strengthening of the SW monsoon and monsoonal upwelling after the LGM. Despite the relatively stable climatic conditions of the Holocene, the δ15N records show regionally different trends in the Arabian Sea. In the upwelling areas in the western part of the basin, δ15N values are lower during the mid-Holocene (4.2-8.2 ka BP) compared to the late Holocene ( < 4.2 ka BP) due to stronger ventilation of the OMZ during the period of the most intense southwest monsoonal upwelling. In contrast, δ15N values in the northern and eastern Arabian Sea rose during the last 8 kyr. The displacement of the core of the OMZ from the region of maximum productivity in the western Arabian Sea to its present position in the northeast was established during the middle and late Holocene. This was probably caused by (i) reduced ventilation due to a longer residence time of OMZ waters and (ii) augmented by rising oxygen consumption due to enhanced northeast-monsoon-driven biological productivity. This concurs with the results of the Kiel Climate Model, which show an increase in OMZ volume during the last 9 kyr related to the increasing age of the OMZ water mass.

Chromophoric and fluorescent dissolved organic matter in and above the oxygen minimum zone off Peru

NASA Astrophysics Data System (ADS)

Loginova, A. N.; Thomsen, S.; Engel, A.

2016-11-01

As a result of nutrient upwelling, the Peruvian coastal system is one of the most productive regions in the ocean. Sluggish ventilation of intermediate waters, characteristic for the Eastern Tropical South Pacific (ETSP) and microbial degradation of a high organic matter load promotes deoxygenation at depth. Dissolved organic matter (DOM) plays a key role in microbial respiration and carbon cycling, but little is known on DOM distribution and cycling in the ETSP. DOM optical properties give important insights on DOM sources, structure and biogeochemical reactivity. Here, we present data and a conceptual view on distribution and cycling of chromophoric (CDOM) and fluorescent (FDOM) DOM in and above the oxygen minimum zone (OMZ) off Peru. Five fluorescent components were identified during PARAFAC analysis. Highest intensities of CDOM and of the amino acid-like fluorescent component (C3) occurred above the OMZ and coincided with maximum chl a concentrations, suggesting phytoplankton productivity as major source. High intensities of a marine humic-like fluorescent component (C1), observed in subsurface waters, indicated in situ microbial reworking of DOM. FDOM release from inner shelf sediment was determined by seawater analysis and continuous glider sensor measurement and included a humic-like component (C2) with a signature typical for terrestrially derived humic acids. Upwelling supplied humic-like substances to the euphotic zone. Photo-reactions were likely involved in the production of a humic-like fluorescent component (C5). Our data show that variable biological and physical processes need to be considered for understanding DOM cycling in a highly dynamic coastal upwelling system like the ETSP off Peru.

Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics

PubMed Central

Roux, Simon; Hawley, Alyse K; Torres Beltran, Monica; Scofield, Melanie; Schwientek, Patrick; Stepanauskas, Ramunas; Woyke, Tanja; Hallam, Steven J; Sullivan, Matthew B

2014-01-01

Viruses modulate microbial communities and alter ecosystem functions. However, due to cultivation bottlenecks, specific virus–host interaction dynamics remain cryptic. In this study, we examined 127 single-cell amplified genomes (SAGs) from uncultivated SUP05 bacteria isolated from a model marine oxygen minimum zone (OMZ) to identify 69 viral contigs representing five new genera within dsDNA Caudovirales and ssDNA Microviridae. Infection frequencies suggest that ∼1/3 of SUP05 bacteria is viral-infected, with higher infection frequency where oxygen-deficiency was most severe. Observed Microviridae clonality suggests recovery of bloom-terminating viruses, while systematic co-infection between dsDNA and ssDNA viruses posits previously unrecognized cooperation modes. Analyses of 186 microbial and viral metagenomes revealed that SUP05 viruses persisted for years, but remained endemic to the OMZ. Finally, identification of virus-encoded dissimilatory sulfite reductase suggests SUP05 viruses reprogram their host's energy metabolism. Together, these results demonstrate closely coupled SUP05 virus–host co-evolutionary dynamics with the potential to modulate biogeochemical cycling in climate-critical and expanding OMZs. DOI: http://dx.doi.org/10.7554/eLife.03125.001 PMID:25171894

Influence of oxygen availability on the activities of ammonia-oxidizing archaea.

PubMed

Qin, Wei; Meinhardt, Kelley A; Moffett, James W; Devol, Allan H; Virginia Armbrust, E; Ingalls, Anitra E; Stahl, David A

2017-06-01

Recent studies point to the importance of oxygen (O 2 ) in controlling the distribution and activity of marine ammonia-oxidizing archaea (AOA), one of the most abundant prokaryotes in the ocean. The AOA are associated with regions of low O 2 tension in oceanic oxygen minimum zones (OMZs), and O 2 availability is suggested to influence their production of the ozone-depleting greenhouse gas nitrous oxide (N 2 O). We show that marine AOA available in pure culture sustain high ammonia oxidation activity at low μM O 2 concentrations, characteristic of suboxic regions of OMZs (<10 µM O 2 ), and that atmospheric concentrations of O 2 may inhibit the growth of some environmental populations. We quantify the increasing N 2 O production by marine AOA with decreasing O 2 tensions, consistent with the plausibility of an AOA contribution to the accumulation of N 2 O at the oxic-anoxic redox boundaries of OMZs. Variable sensitivity to peroxide also suggests that endogenous or exogenous reactive oxygen species are of importance in determining the environmental distribution of some populations. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

Living (Rose Bengal stained) benthic foraminiferal faunas along a strong bottom-water oxygen gradient on the Indian margin (Arabian Sea)

NASA Astrophysics Data System (ADS)

Caulle, C.; Mojtahid, M.; Gooday, A. J.; Jorissen, F. J.; Kitazato, H.

2015-02-01

Rose Bengal stained foraminiferal assemblages were analysed along a five-station bathymetric transect across the core and the lower part of the oxygen minimum zone (OMZ) on the Indian margin of the Arabian Sea. Sediment cores were collected using the manned submersible Shinkai 6500 during RV Yokosuka cruise YK08-11 in the post-monsoon season (October 2008) at water depths ranging from 535 to 2000 m, along a gradient from almost anoxic to well-oxygenated (0.3 to 108 μM) bottom waters. Stained foraminiferal densities were very high in the OMZ core (535 m) and decreased with depth. The faunas were dominated (40-80%) by non-calcareous taxa at all stations. These were mainly species of Reophax and Lagenammina but also included delicate monothalamous taxa (organic-walled "allogromiids", agglutinated saccamminids, psammosphaerids and tubular forms). These new data from the Indian margin are compared to previous studies from the Murray Ridge, the Pakistan margin and the Oman margin. The fact that similar species were found at sites with comparable bottom-water oxygen concentrations but with very different surface water productivity suggests that, within the strongly developed Arabian Sea OMZ, bottom-water oxygen concentration, and not the organic flux to the sea floor, is the main factor controlling the species composition of the foraminiferal communities. Several foraminiferal species (e.g. Praeglobobulimina sp. 1, Ammodiscus sp. 1, Bolivina aff. dilatata) were confined to the core of the OMZ and are presently known only from the Arabian Sea. Because of their association with extremely low-oxygen concentration, these species may prove to be good indicators of past OMZ variability in the Arabian Sea.

Live foraminiferal faunas (Rose Bengal stained) from the northern Arabian Sea: links with bottom-water oxygenation

NASA Astrophysics Data System (ADS)

Caulle, C.; Koho, K. A.; Mojtahid, M.; Reichart, G. J.; Jorissen, F. J.

2013-09-01

Live (Rose Bengal stained) benthic foraminifera from the Murray Ridge, within and below the northern Arabian Sea Oxygen Minimum Zone (OMZ), were studied in order to determine the relationship between faunal composition, bottom-water oxygenation (BWO), pore-water chemistry and organic matter (organic carbon and phytopigment) distribution. A series of multicores were recovered from a ten-station oxygen (BWO: 2-78 μM) and bathymetric (885-3010 m depth) transect during the winter monsoon in January 2009. Foraminifera were investigated from three different size fractions (63-125 μm, 125-150 μm and > 150 μm). The larger foraminifera (> 125 μm) were strongly dominated by agglutinated species (e.g. Reophax spp.). In contrast, in the 63-125 μm fraction, calcareous taxa were more abundant, especially in the core of the OMZ, suggesting an opportunistic behaviour. On the basis of a Principal Component Analysis, three foraminiferal groups were identified, reflecting the environmental parameters along the study transect. The faunas from the shallowest stations, in the core of the OMZ (BWO: 2 μM), were composed of "low oxygen" species, typical of the Arabian Sea OMZ (e.g., Rotaliatinopsis semiinvoluta, Praeglobobulimina spp. , Bulimina exilis, Uvigerina peregrina typeparva). These taxa are adapted to the very low BWO conditions and to high phytodetritus supplies. The transitional group, typical for the lower part of the OMZ (BWO: 5-16 μM), is composed of more cosmopolitan taxa tolerant to low-oxygen concentrations (Globocassidulina subglobosa, Ehrenbergina trigona). Below the OMZ (BWO: 26-78 μM), where food availability is more limited and becomes increasingly restricted to surficial sediments, more cosmopolitan calcareous taxa were present, such as Bulimina aculeata, Melonis barleeanus, Uvigerina peregrina and Epistominella exigua. Miliolids were uniquely observed in this last group, reflecting the higher BWO. At these deeper sites, the faunas exhibit a clear depth succession of superficial, intermediate and deep-infaunal microhabitats, because of the deeper oxygen and nitrate penetration into the sediment.

Variations of oxygen-minimum and primary productivity recorded in sediments of the Arabian Sea

NASA Astrophysics Data System (ADS)

Schulte, Sonja; Rostek, Frauke; Bard, Edouard; Rullkötter, Jürgen; Marchal, Olivier

1999-11-01

Two deep-sea sediment cores from the northeastern and the southeastern Arabian Sea were studied in order to reconstruct the palaeoenvironments of the past glacial cycles. Core 136KL was recovered from the high-productivity area off Pakistan within the modern oxygen-minimum zone (OMZ). By contrast, modern primary productivity at the site of MD900963 close to Maldives is moderate and bottom waters are today well oxygenated. For both cores, we reconstructed the changes in palaeoproductivity using a set of biomarkers (alkenones, dinosterol and brassicasterol); the main result is that primary productivity is enhanced during glacial stages and lowered during interstadials. The proxies associated with productivity show a 23 kyr cyclicity corresponding to the precession-related insolation cycle. Palaeoredox conditions were studied in both cores using a new organic geochemical parameter (C 35/C 31- n-alkane ratio) developed by analysing surface sediments from a transect across the OMZ off Pakistan. The value of this ratio in core 136KL shows many variations during the last 65 kyr, indicating that the OMZ was not stable during this time: it disappeared completely during Heinrich- and the Younger Dryas events, pointing to a connection between global oceanic circulation and the stability of the OMZ. The C 35/C 31 ratio determined in sediments of core MD900963 shows that bottom waters remained rather well oxygenated over the last 330 kyr, which is confirmed by comparison with authigenic metal concentrations in the same sediments. A zonally averaged, circulation-biogeochemical ocean model was used to explore how the intermediate Indian Ocean responds to a freshwater flux anomaly at the surface of the North Atlantic. As suggested by the geochemical time series, both the abundance of Southern Ocean Water and the oxygen concentration are significantly increased in response to this freshwater perturbation.

Glacial-Holocene variability in pelagic denitrification and OMZ intensity along the NW Mexican Margin

NASA Astrophysics Data System (ADS)

Ontiveros Cuadras, J. F.; Thunell, R.; Ruiz-Fernandez, A. C.; Machain-Castillo, M. L.; Tappa, E.

2017-12-01

Denitrification of fixed nitrogen represents a substantial loss of bioavailable nitrogen from the ocean, thus playing a major role in the global nitrogen cycle. Water-column (pelagic) denitrification occurs mostly in the oxygen minimum zones (OMZs), which are situated beneath coastal upwelling areas that are characterized by high settling fluxes of organic detritus and high rates of oxygen utilization from remineralization. Our study uses biogenic components (total organic carbon and opal) and δ15N values of sediments from the NW Mexican Margin to reconstruct variations in denitrification and strength of the OMZ in the eastern tropical North Pacific (ETNP) for the last 36,000 years. During the last glacial period (LGM, 23-18 kyr) the associations between relatively low δ15N values (7-8‰) and low TOC (2-4%) and opal (1-4%) content indicates reduced denitrification due to reduced upwelling and decreased flux of organic matter through the OMZ. This was followed by abrupt acceleration of water-column denitrification (δ15N, 7-10‰) and the strengthening of the OMZ during the latter half of Heinrich Stadial 1 (HS1; 18-14.7 kyr). However, the biogenic component of sediments deposited during HS1 do not increase appreciably, suggesting that the increase in denitrification was not driven by an increase in productivity. Furthermore, the increase in δ15N precedes the deglacial decrease in planktonic foraminiferal δ18O which mostly occurs during the Bolling Alerod (14.7-12.9 kyr). This suggests that the increase in denitrification was not a response to surface warming. Rather, we attribute the rapid increase in denitrification during HS1 to reduced ventilation of the ETNP OMZ. Following the peak in denitrification at the end of HS1, we observe a small but steady decline in δ15N over the last 15 kyr. Higher TOC in Holocene sediments relative to glacial sediments suggests that increased productivity has played a role in maintaining a strong OMZ throughout the Holocene.

The OMZ and nutrient features as a signature of interannual and low-frequency variability in the Peruvian upwelling system

NASA Astrophysics Data System (ADS)

Graco, Michelle I.; Purca, Sara; Dewitte, Boris; Castro, Carmen G.; Morón, Octavio; Ledesma, Jesús; Flores, Georgina; Gutiérrez, Dimitri

2017-10-01

Over the last decades, the Humboldt Current upwelling ecosystem, particularly the northern component off the coast of Peru, has drawn the interest of the scientific community because of its unique characteristics: it is the upwelling system with the biggest catch productivity despite the fact it is embedded in a shallow and intense oxygen minimum zone (OMZ). It is also an area of intense nitrogen loss and anammox activity and experiences large interannual variability associated with the equatorial remote forcing. In this context, we examined the oceanographic and biogeochemical variability associated with the OMZ off central Peru from a monthly time series (1996-2011) recorded off the coast of Callao (12° 02' S, 77° 29' W). The data reveal a rich spectrum of variability in the OMZ that includes frequencies ranging from seasonal to interannual scales. Due to the efficient oceanic teleconnection off Peru, the observed variability is interpreted in the light of an estimate of the equatorial Kelvin wave contribution to sea level anomalies considering the peculiarities of its vertical structure (i.e., the first two baroclinic modes). The span of the data set allows us to contrast two OMZ regimes. The strong regime is associated with the strong 1997-1998 equatorial Pacific El Niño, during which the OMZ adjusted to Kelvin-wave-induced downwelling conditions that switched off the upwelling and drastically reduced nutrient availability. The weak regime corresponds to the post-2000 period associated with the occurrence of moderate central Pacific El Niño events and enhanced equatorial Kelvin wave activity, in which mean upwelling conditions are maintained. It is shown that the characteristics of the coupling between physics and biogeochemistry is distinct between the two regimes with the weak regime being associated with a larger explained variance in biogeochemical properties not linearly related to the ENSO oceanic teleconnection. The data also reveal a long-term trend from 1999 corresponding to a deepening of the oxygen-deficient waters and warming. The implications of our results for understanding the OMZ dynamics off Peru are discussed.

N-loss isotope effects in the Peru oxygen minimum zone studied using a mesoscale eddy as a natural tracer experiment

NASA Astrophysics Data System (ADS)

Bourbonnais, Annie; Altabet, Mark A.; Charoenpong, Chawalit N.; Larkum, Jennifer; Hu, Haibei; Bange, Hermann W.; Stramma, Lothar

2015-06-01

Mesoscale eddies in Oxygen Minimum Zones (OMZs) have been identified as important fixed nitrogen (N) loss hotspots that may significantly impact both the global rate of N-loss as well as the ocean's N isotope budget. They also represent "natural tracer experiments" with intensified biogeochemical signals that can be exploited to understand the large-scale processes that control N-loss and associated isotope effects (ɛ; the ‰ deviation from 1 in the ratio of reaction rate constants for the light versus heavy isotopologues). We observed large ranges in the concentrations and N and O isotopic compositions of nitrate (NO3-), nitrite (NO2-), and biogenic N2 associated with an anticyclonic mode-water eddy in the Peru OMZ during two cruises in November and December 2012. In the eddy's center where NO3- was nearly exhausted, we measured the highest δ15N values for both NO3- and NO2- (up to ~70‰ and 50‰) ever reported for an OMZ. Correspondingly, N deficit and biogenic N2-N concentrations were also the highest near the eddy's center (up to ~40 µmol L-1). δ15N-N2 also varied with biogenic N2 production, following kinetic isotopic fractionation during NO2- reduction to N2 and, for the first time, provided an independent assessment of N isotope fractionation during OMZ N-loss. We found apparent variable ɛ for NO3- reduction (up to ~30‰ in the presence of NO2-). However, the overall ɛ for N-loss was calculated to be only ~13-14‰ (as compared to canonical values of ~20-30‰) assuming a closed system and only slightly higher assuming an open system (16-19‰). Our results were similar whether calculated from the disappearance of DIN (NO3- + NO2-) or from the appearance of N2 and changes in isotopic composition. Further, we calculated the separate ɛ values for NO3- reduction to NO2- and NO2- reduction to N2 of ~16-21‰ and ~12‰, respectively, when the effect of NO2- oxidation could be removed. These results, together with the relationship between N and O of NO3- isotopes and the difference in δ15N between NO3- and NO2-, confirm a role for NO2- oxidation in increasing the apparent ɛ associated with NO3- reduction. The lower ɛ for N-loss calculated in this study could help reconcile the current imbalance in the global N budget if representative of global OMZ N-loss.

Nitrous Oxide Cycling in the Eastern Tropical South Pacific as Inferred from Isotopic and Isotopomeric Data.

NASA Astrophysics Data System (ADS)

Vedamati, J.; Chang, B. X.; Peters, B. D.; Forbes, M. S.; Mordy, C.; Warner, M. J.; Devol, A.; Ward, B. B.; Casciotti, K. L.

2014-12-01

Marine sources of nitrous oxide (N2O), an important greenhouse gas, account for up to 25% of global emissions, out of which 25-75% originates from oxygen minimum zones (OMZs). The Eastern Tropical South Pacific (ETSP) OMZ is characterized by low to undetectable oxygen concentrations within the water column and is known to be a region of intense N2O cycling. However, the balance of processes regulating N2O production and emissions is still uncertain. The isotopic composition of dissolved N2O is a tracer of its production, transport, and consumption processes in the ocean. Here we use concentration, isotopic and isotopomeric measurements of dissolved N2O collected during cruise NBP1305 to the ETSP in 2013 to examine the processes affecting the distribution of N2O throughout the water column. Dissolved N2O concentrations ranged between 42-65 nmol/L at the edges of the oxycline while ranging between 6 -20 nmol/L at the core of the OMZ. The nitrogen and oxygen isotopic composition of dissolved N2O (reported as δ15N vs air N2 and δ18O vs VSMOW in units of ‰, respectively) displayed maxima coincident with the OMZ core. δ15N of N2O ranged between 14 - 22‰, δ18O of N2O ranged between 68 - 100‰ while site preference of N2O ranged between 39 - 60‰ at the OMZ core. Based on the T-S plot and N2O concentration profiles, there appears to be a strong correlation between N2O and water mass features within the OMZ. Thus, the differences in δ15N and δ18O of N2O along the north- south transect within the OMZ core may be related to differences in N2O production-consumption mechanisms along with N2O transport. Within the OMZ, the δ18O: δ15N relationship is also much lower than the 2.5:1 ratio expected for N2O consumption via denitrification, leading us to believe that both production and consumption processes are likely to be at play.

Ammonium excretion and oxygen respiration of tropical copepods and euphausiids exposed to oxygen minimum zone conditions

NASA Astrophysics Data System (ADS)

Kiko, Rainer; Hauss, Helena; Buchholz, Friedrich; Melzner, Frank

2016-04-01

Calanoid copepods and euphausiids are key components of marine zooplankton communities worldwide. Most euphausiids and several copepod species perform diel vertical migrations (DVMs) that contribute to the export of particulate and dissolved matter to midwater depths. In vast areas of the global ocean, and in particular in the eastern tropical Atlantic and Pacific, the daytime distribution depth of many migrating organisms corresponds to the core of the oxygen minimum zone (OMZ). At depth, the animals experience reduced temperature and oxygen partial pressure (pO2) and an increased carbon dioxide partial pressure (pCO2) compared to their near-surface nighttime habitat. Although it is well known that low oxygen levels can inhibit respiratory activity, the respiration response of tropical copepods and euphausiids to relevant pCO2, pO2, and temperature conditions remains poorly parameterized. Further, the regulation of ammonium excretion at OMZ conditions is generally not well understood. It was recently estimated that DVM-mediated ammonium supply could fuel bacterial anaerobic ammonium oxidation - a major loss process for fixed nitrogen in the ocean considerably. These estimates were based on the implicit assumption that hypoxia or anoxia in combination with hypercapnia (elevated pCO2) does not result in a down-regulation of ammonium excretion. We exposed calanoid copepods from the Eastern Tropical North Atlantic (ETNA; Undinula vulgaris and Pleuromamma abdominalis) and euphausiids from the Eastern Tropical South Pacific (ETSP; Euphausia mucronata) and the ETNA (Euphausia gibboides) to different temperatures, carbon dioxide and oxygen levels to study their survival, respiration and excretion rates at these conditions. An increase in temperature by 10 °C led to an approximately 2-fold increase of the respiration and excretion rates of U. vulgaris (Q10, respiration = 1.4; Q10, NH4-excretion = 1.6), P. abdominalis (Q10, respiration = 2.0; Q10, NH4-excretion = 2.4) and E. gibboides (Q10, respiration = 2.0; Q10, NH4-excretion = 2.4; E. mucronata not tested). Exposure to differing carbon dioxide levels had no overall significant impact on the respiration or excretion rates. Species from the ETNA were less tolerant to low oxygen levels than E. mucronata from the ETSP, which survived exposure to anoxia at 13 °C. Respiration and excretion rates were reduced upon exposure to low oxygen levels, albeit at different species-specific levels. Reduction of the excretion and respiration rates in ETNA species occurred at a pO2 of 0.6 (P. abdominalis) and 2.4 kPa (U. vulgaris and E. gibboides) at OMZ temperatures. Such low oxygen levels are normally not encountered by these species in the ETNA. E. mucronata however regularly migrates into the strongly hypoxic to anoxic core of the ETSP OMZ. Exposure to low oxygen levels led to a strong reduction of respiration and ammonium excretion in E. mucronata (pcrit respiration = 0.6, pcrit NH4-excretion = 0.73). A drastic reduction of respiratory activity was also observed by other authors for euphausiids, squat lobsters and calanoid copepods, but was not yet accounted for when calculating DVM-mediated active fluxes into the ETSP OMZ. Current estimates of DVM-mediated active export of carbon and nitrogen into the ETSP OMZ are therefore likely too high and future efforts to calculate these export rates should take the physiological responses of migratory species to OMZ conditions into account.

Macrofauna regulate heterotrophic bacterial carbon and nitrogen incorporation in low-oxygen sediments

PubMed Central

Hunter, William R; Veuger, Bart; Witte, Ursula

2012-01-01

Oxygen minimum zones (OMZs) currently impinge upon >1 million km2 of sea floor and are predicted to expand with climate change. We investigated how changes in oxygen availability, macrofaunal biomass and retention of labile organic matter (OM) regulate heterotrophic bacterial C and N incorporation in the sediments of the OMZ-impacted Indian continental margin (540–1100 m; [O2]=0.35–15 μmol l−1). In situ pulse-chase experiments traced 13C:15N-labelled phytodetritus into bulk sediment OM and hydrolysable amino acids, including the bacterial biomarker 𝒟-alanine. Where oxygen availability was lowest ([O2]=0.35 μmol l−1), metazoan macrofauna were absent and bacteria assimilated 30–90% of the labelled phytodetritus within the sediment. At higher oxygen levels ([O2]=2–15 μmol l−1) the macrofaunal presence and lower phytodetritus retention with the sediment occur concomitantly, and bacterial phytodetrital incorporation was reduced and retarded. Bacterial C and N incorporation exhibited a significant negative relationship with macrofaunal biomass across the OMZ. We hypothesise that fauna–bacterial interactions significantly influence OM recycling in low-oxygen sediments and need to be considered when assessing the consequences of global change on biogeochemical cycles. PMID:22592818

Climate and Anthropogenic Controls of Coastal Deoxygenation on Interannual to Centennial Timescales

NASA Astrophysics Data System (ADS)

Wang, Yi; Hendy, Ingrid; Napier, Tiffany J.

2017-11-01

Understanding dissolved oxygen variability in the ocean is limited by the short duration of direct measurements; however, sedimentary oxidation-reduction reactions can provide context for modern observations. Here we use bulk sediment redox-sensitive metal enrichment factors (MoEF, ReEF, and UEF) and scanning X-ray fluorescence records to examine annual-scale sedimentary oxygen concentrations in the Santa Barbara Basin from the Industrial Revolution (Common Era 1850) to present. Enrichments are linked to measured bottom water oxygen concentrations after 1986. We reveal gradual intensification of the coastal oxygen minimum zone (OMZ) on the southern California margin coinciding with the twentieth century anthropogenic warming trend that leads to reduced oxygen solubility and greater stratification. High-frequency interannual oscillations become more prominent over the last three decades. These are attributed to local "flushing events" triggered by the transition from El Niño to La Niña conditions, which further amplify changes in the extratropical southern Californian OMZ.

Integrating Environmental Genomics and Biogeochemical Models: a Gene-centric Approach

NASA Astrophysics Data System (ADS)

Reed, D. C.; Algar, C. K.; Huber, J. A.; Dick, G.

2013-12-01

Rapid advances in molecular microbial ecology have yielded an unprecedented amount of data about the evolutionary relationships and functional traits of microbial communities that regulate global geochemical cycles. Biogeochemical models, however, are trailing in the wake of the environmental genomics revolution and such models rarely incorporate explicit representations of bacteria and archaea, nor are they compatible with nucleic acid or protein sequence data. Here, we present a functional gene-based framework for describing microbial communities in biogeochemical models that uses genomics data and provides predictions that are readily testable using cutting-edge molecular tools. To demonstrate the approach in practice, nitrogen cycling in the Arabian Sea oxygen minimum zone (OMZ) was modelled to examine key questions about cryptic sulphur cycling and dinitrogen production pathways in OMZs. By directly linking geochemical dynamics to the genetic composition of microbial communities, the method provides mechanistic insights into patterns and biogeochemical consequences of marine microbes. Such an approach is critical for informing our understanding of the key role microbes play in modulating Earth's biogeochemistry.

Modeling the Oxygen Cycle in the Equatorial Pacific: Regulation of Physical and Biogeochemical Processes

NASA Astrophysics Data System (ADS)

Wang, X.; Murtugudde, R. G.; Zhang, D.

2016-12-01

Photosynthesis and respiration are important processes in all ecosystems on the Earth, in which carbon and oxygen are the two main elements. However, the oxygen cycle has received much less attention (relative to the carbon cycle) despite its big role in the earth system. Oxygen is a sensitive indicator of physical and biogeochemical processes in the ocean thus a key parameter for understanding the ocean's ecosystem and biogeochemistry. The Oxygen-Minimum-Zone (OMZ), often seen below 200 m, is a profound feature in the world oceans. There has been evidence of OMZ expansion over the past few decades in the tropical oceans. Climate models project that there would be a continued decline in dissolved oxygen (DO) and an expansion of the tropical OMZs under future warming conditions, which is of great concern because of the implications for marine organisms. We employ a validated three-dimensional model that simulates physical transport (circulation and vertical mixing), biological processes (O2 production and consumption) and ocean-atmosphere O2 exchange to quantify various sources and sinks of DO over 1980-2015. We show how we use observational data to improve our model simulation. Then we assess the spatial and temporal variability in simulated DO in the tropical Pacific Ocean, and explore the impacts of physical and biogeochemical processes on the DO dynamics, with a focus on the MOZ. Our analyses indicate that DO in the OMZ has a positive relationship with the 13ºC isotherm depth and a negative relationship with the concentration of dissolved organic material.

El Niño and similar perturbation effects on the benthos of the Humboldt, California, and Benguela Current upwelling ecosystems

NASA Astrophysics Data System (ADS)

Arntz, W. E.; Gallardo, V. A.; Gutiérrez, D.; Isla, E.; Levin, L. A.; Mendo, J.; Neira, C.; Rowe, G. T.; Tarazona, J.; Wolff, M.

2006-03-01

To a certain degree, Eastern Boundary Current (EBC) ecosystems are similar: Cold bottom water from moderate depths, rich in nutrients, is transported to the euphotic zone by a combination of trade winds, Coriolis force and Ekman transport. The resultant high primary production fuels a rich secondary production in the upper pelagic and nearshore zones, but where O2 exchange is restricted, it creates oxygen minimum zones (OMZs) at shelf and upper slope (Humboldt and Benguela Current) or slope depths (California Current). These hypoxic zones host a specifically adapted, small macro- and meiofauna together with giant sulphur bacteria that use nitrate to oxydise H2S. In all EBC, small polychaetes, large nematodes and other opportunistic benthic species have adapted to the hypoxic conditions and co-exist with sulphur bacteria, which seem to be particularly dominant off Peru and Chile. However, a massive reduction of macrobenthos occurs in the core of the OMZ. In the Humboldt Current area the OMZ ranges between <100 and about 600 m, with decreasing thickness in a poleward direction. The OMZ merges into better oxygenated zones towards the deep sea, where large cold-water mega- and macrofauna occupy a dominant role as in the nearshore strip. The Benguela Current OMZ has a similar upper limit but remains shallower. It also hosts giant sulphur bacteria but little is known about the benthic fauna. However, sulphur eruptions and intense hypoxia might preclude the coexistence of significant mega- und macrobenthos. Conversely, off North America the upper limit of the OMZ is considerably deeper (e.g., 500-600 m off California and Oregon), and the lower boundary may exceed 1000m. The properties described are valid for very cold and cold (La Niña and "normal") ENSO conditions with effective upwelling of nutrient-rich bottom water. During warm (El Niño) episodes, warm water masses of low oxygen concentration from oceanic and equatorial regions enter the upwelling zones, bringing a variety of (sub)tropical immigrants. The autochthonous benthic fauna emigrates to deeper water or poleward, or suffers mortality. However, some local macrofaunal species experience important population proliferations, presumably due to improved oxygenation (in the southern hemisphere), higher temperature tolerance, reduced competition or the capability to use different food. Both these negative and positive effects of El Niño influence local artisanal fisheries and the livelihood of coastal populations. In the Humboldt Current system the hypoxic seafloor at outer shelf depths receives important flushing from the equatorial zone, causing havoc on the sulphur bacteria mats and immediate recolonisation of the sediments by mega- and macrofauna. Conversely, off California, the intruding equatorial water masses appear to have lower oxygen than ambient waters, and may cause oxygen deficiency at upper slope depths. Effects of this change have not been studied in detail, although shrimp and other taxa appear to alter their distribution on the continental margin. Other properties and reactions of the two Pacific EBC benthic ecosystems to El Niño seem to differ, too, as does the overall impact of major episodes (e.g., 1982/1983(1984) vs. 1997/1998). The relation of the "Benguela Niño" to ENSO seems unclear although many Pacific-Atlantic ocean and atmosphere teleconnections have been described. Warm, low-oxygen equatorial water seems to be transported into the upwelling area by similar mechanisms as in the Pacific, but most major impacts on the eukaryotic biota obviously come from other, independent perturbations such as an extreme eutrophication of the sediments ensuing in sulphidic eruptions and toxic algal blooms. Similarities and differences of the Humboldt and California Current benthic ecosystems are discussed with particular reference to ENSO impacts since 1972/73. Where there are data available, the authors include the Benguela Current ecosystem as another important, non-Pacific EBC, which also suffers from the effects of hypoxia.

Strengthening of the Eastern Tropical North Pacific Oxygen Minimum Zone during Marine Isotope Stage 3 despite the intensification of Dansgaard-Oeschger and Heinrich events

NASA Astrophysics Data System (ADS)

Choumiline, K.; Lyons, T. W.; Carriquiry, J. D.; Perez-Cruz, L. L.; Raiswell, R.; Beaufort, L.; Rafter, P. A.

2017-12-01

The Eastern Tropical North Pacific (ETNP) is sensitive to climatic changes that either strengthen or weaken the Oxygen Minimum Zone (OMZ). Paleoproxy and model evidence indicate that the shifts from cold stadials (LGM, MIS4) to warm interstadials are often accompanied by sudden sea level rise, intensification of marine productivity and enhanced oceanic anoxia. These intermediate states remain enigmatic, especially with overimposed Dansgaard-Oeschger (DO) oscillations and Heinrich events. We present a high-resolution reconstruction of productivity (Corg, P, Cd, Ni, Ba) and redox (Fe/Al, FeHR/FeT, Mo, V, U) of the ETNP over the last glacial period with special emphasis on the MIS3 transition (roughly 30-60 kyr BP). We found that the OMZ was profoundly anoxic throughout that interval, based on marine sedimentary paleoproxy records. Our spatiotemporal reconstruction shows that the geographic extent of enhanced deoxygenation during the MIS3 not only encompassed the Gulf of California (Alfonso, La Paz and Guaymas Basin), Pacific margin off Mazatlan and Baja California (Soledad Basin), but also California (Santa Barbara Basin) and western Canadian margins. The OMZ achieved its peak strength during 45-60 kyr BP exposed by the highest Mo (35 mg/kg), V (120 mg/kg) and U (13 mg/kg) values, and then commenced weakening and contracting onto the LGM. Marine productivity was also reportedly high during the MIS3, mostly mirroring the redox signals. In contrast, MIS4 and LGM were well-oxygenated and depleted in redox proxies (as low as 4 mg/kg of Mo, 60 mg/kg of V and 4 mg/kg of U). Despite of enhanced anoxia or even euxinia during the MIS3, the effect of cold D-O and Heinrich events was unmistakable. Most of these perturbations corresponded to low export production (low Corg, P, Cd/Al, Ni/Al and Ba/Al) and good ventilation of the ETNP. The recoveries after these events were relatively quick and anoxic conditions were re-established within hundreds of years. As of now, there is no definitive explanation for the mechanisms by which D-O and Heinrich events exert changes in the intensity of ETNP OMZs during the MIS3, but a consensus is building. We will discuss the most popular hypotheses that involve changes in atmospheric and thermohaline circulation, as well as variability in deep-sea nutrients.

Effects of latitudinal changes in the oxygen minimum zone of the northeast Pacific on the distribution of bathyal benthic decapod crustaceans

NASA Astrophysics Data System (ADS)

Papiol, Vanesa; Hendrickx, Michel E.; Serrano, David

2017-03-01

The presence of an Oxygen Minimum Zone (OMZ) is one of the major characteristics of the eastern Pacific. The OMZ changes strongly adjacent to Mexico in its thickness and intensity. The ecological impacts of those changes were studied by examining the community structures of bathyal benthic and bentho-pelagic decapod crustaceans, and their oceanographic contexts, on the Mexican Pacific slope along a wide latitudinal range (16-32°N). Decapod crustaceans were collected with a benthic sledge from 48 stations between 865 and 2165 m in three main areas: offshore of northern Baja California (NBC), off southern Baja California (SBC) and in the southern Mexican Pacific (SMP). Physical-chemical parameters were measured in the water column, and sediment composition was analyzed for each station. The narrowing and weakening of the OMZ north of ca. 26°N was confirmed. Water with dissolved oxygen <0.5 ml l-1 occupied a stratum of 1231 m in the SMP vs. only 664 m off NBC. The strongest changes coincided with a region of surface, subsurface and intermediate water mass transitions, where less saline waters from the north extended to depths of ca. 1000 m. Sand proportions were higher in sediments to the south, whereas silt dominated offshore of NBC. A strong latitudinal shift in decapod community composition and bathymetric distribution occurred from off SBC to off NBC, coinciding with changes in oceanographic conditions. The dominant genera of decapod crustaceans at slope depths were cognate to those dominating slope areas in other tropical and subtropical regions of the world. In the SMP and off SBC, large aggregations of organisms were observed at 900-1300 m, with a sharp decrease in abundance at greater depth. Off NBC, the density of organisms was intermediate at all depths. The combined effects of dissolved oxygen concentration and characteristics of water masses affected the distribution of organisms. The faunal patterns were also related with sediment grain size.

Circulation, eddies, oxygen and nutrient changes in the eastern tropical South Pacific Ocean

NASA Astrophysics Data System (ADS)

Czeschel, R.; Stramma, L.; Weller, R. A.; Fischer, T.

2014-09-01

A large, subsurface oxygen deficiency zone is located in the eastern tropical South Pacific Ocean (ETSP). The large-scale circulation in the eastern equatorial Pacific and off Peru in November/December 2012 shows the influence of the equatorial current system, the eastern boundary currents, and the northern reaches of the subtropical gyre. In November 2012 the Equatorial Undercurrent is centered at 250 m depth, deeper than in earlier observations. In December 2012 the equatorial water is transported southeastward near the shelf in the Peru-Chile Undercurrent with a mean transport of 1.6 Sv. In the oxygen minimum zone (OMZ) the flow is overlaid with strong eddy activity on the poleward side of the OMZ. Floats with parking depth at 400 m show fast westward flow in the mid-depth equatorial channel and sluggish flow in the OMZ. Floats with oxygen sensors clearly show the passage of eddies with oxygen anomalies. The long-term float observations in the upper ocean lead to a net community production estimate at about 18° S of up to 16.7 mmol C m-3 yr1 extrapolated to an annual rate and 7.7 mmol C m-3 yr-1 for the time period below the mixed layer. Oxygen differences between repeated ship sections are influenced by the Interdecadal Pacific Oscillation, by the phase of El Niño, by seasonal changes, and by eddies and hence have to be interpreted with care. At and south of the equator the decrease in oxygen in the upper ocean since 1976 is related to an increase in nitrate, phosphate, and in part in silicate.

Circulation, eddies, oxygen, and nutrient changes in the eastern tropical South Pacific Ocean

NASA Astrophysics Data System (ADS)

Czeschel, R.; Stramma, L.; Weller, R. A.; Fischer, T.

2015-06-01

A large subsurface oxygen deficiency zone is located in the eastern tropical South Pacific Ocean (ETSP). The large-scale circulation in the eastern equatorial Pacific and off the coast of Peru in November/December 2012 shows the influence of the equatorial current system, the eastern boundary currents, and the northern reaches of the subtropical gyre. In November 2012 the equatorial undercurrent (EUC) is centered at 250 m depth, deeper than in earlier observations. In December 2012, the equatorial water is transported southeastward near the shelf in the Peru-Chile undercurrent (PCUC) with a mean transport of 1.4 Sv. In the oxygen minimum zone (OMZ), the flow is overlaid with strong eddy activity on the poleward side of the OMZ. Floats with parking depth at 400 m show fast westward flow in the mid-depth equatorial channel and sluggish flow in the OMZ. Floats with oxygen sensors clearly show the passage of eddies with oxygen anomalies. The long-term float observations in the upper ocean lead to a net community production estimate at about 18° S of up to 16.7 mmol C m-3 yr-1 extrapolated to an annual rate and 7.7 mmol C m-3 yr-1 for the time period below the mixed layer. Oxygen differences between repeated ship sections are influenced by the Interdecadal Pacific Oscillation (IPO), by the phase of El Niño, by seasonal changes, and by eddies, and hence have to be interpreted with care. At and south of the Equator the decrease in oxygen in the upper ocean since 1976 is related to an increase in nitrate, phosphate, and in part silicate.

Modeling anoxic aggregates in the ocean - implications for nitrogen, sulfur and trace metal cycling

NASA Astrophysics Data System (ADS)

Bianchi, D.; Weber, T. S.; Deutsch, C.

2016-02-01

Anoxic conditions are uncommon in the open ocean, and mostly confined to the cores of oxygen minimum zones (OMZs). When oxygen runs out, a suite of alternative electron acceptors are used, leading to denitrification and, rarely in open waters, sulfate reduction. Anoxic conditions have been shown to develop inside millimeter-scale organic particles and aggregates, establishing microscale gradients that could sustain diverse microbial communities along a sequence of redox niches. We develop a model of the biogeochemistry of anoxic aggregates that includes aerobic and anaerobic reactions in a diffusion-limited environment, and present analytical and numerical solutions for the conditions that allow denitrification and sulfate reduction inside aggregates. The model is applied to realistic size spectra of particles sinking through the water column, and used to estimate the potential for particle-bound denitrification and sulfate reduction in the global ocean. We show that anoxia inside aggregates may be common throughout low oxygen waters, extending the niche of denitrifying metabolisms beyond fully anoxic zones. In the OMZ cores, aggregates can sustain pockets of sulfate reduction in otherwise non-sulfidic waters, depending on ambient nitrate concentrations, particle respiration rates, and other factors. We further discuss the implications for nitrogen, sulfur and trace metal cycling in the ocean.

Living (Rose-Bengal-stained) benthic foraminiferal faunas along a strong bottom-water oxygen gradient on the Indian margin (Arabian Sea)

NASA Astrophysics Data System (ADS)

Caulle, C.; Mojtahid, M.; Gooday, A. J.; Jorissen, F. J.; Kitazato, H.

2015-08-01

Rose-Bengal-stained foraminiferal assemblages (> 150 μm) were analysed along a five-station bathymetric transect across the core and the lower part of the oxygen minimum zone (OMZ) on the Indian margin of the Arabian Sea. Sediment cores were collected using the manned submersible Shinkai 6500 during the RV Yokosuka cruise YK08-11 in the post-monsoon season (October 2008) at water depths ranging from 535 to 2000 m, along a gradient from almost anoxic to well-oxygenated (0.3 to 108 μM) bottom waters. Stained benthic foraminifera were investigated from two different size fractions (150-300 μm and > 300 μm). Stained foraminiferal densities were very high in the core of the OMZ (at 535 and 649 m) and decreased at deeper sites. The faunas (> 150 μm) were dominated (40-80 %) by non-calcareous taxa at all stations. These were mainly species of Reophax and Lagenammina but also included delicate monothalamous taxa (organic-walled "allogromiids", agglutinated saccamminids, psammosphaerids and tubular forms). These new data from the Indian margin are compared to previous studies from the Murray Ridge, the Pakistan margin and the Oman margin. The fact that similar species were found at sites with comparable bottom-water oxygen concentrations but with very different surface water productivity suggests that, within the strongly developed Arabian Sea OMZ, bottom-water oxygen concentration, and not the organic flux to the sea floor, is the main factor controlling the species composition of the foraminiferal communities. Several foraminiferal species (e.g. Praeglobobulimina sp. 1, Ammodiscus sp. 1, Bolivina aff. dilatata) were confined to the core of the OMZ. These species are presently known only from the Arabian Sea. Because of their association with extremely low oxygen concentrations, these species may be good markers for very low oxygen concentrations, and could be used to reconstruct past OMZ variability in the Arabian Sea.

Influence of Antarctic Intermediate Water on the deoxygenation of the Atlantic Ocean

NASA Astrophysics Data System (ADS)

Santos, Guilherme Cordova; Kerr, Rodrigo; Azevedo, José Luiz Lima; Mendes, Carlos Rafael Borges; da Cunha, Letícia Cotrim

2016-12-01

Hydrographic trends in the Antarctic Intermediate Water (AAIW) layer that may be associated with changes in the thickness and oxygen content of oxygen minimum zones (OMZs) in the eastern tropical South Atlantic (ETSA) and eastern tropical North Atlantic (ETNA) are investigated by using historical data (1960 to 2015). Our results reveal that the thickness of these OMZs has continually increased (2.58 ± 0.67 m yr-1 for the ETSA and 3.37 ± 0.73 m yr-1 for the ETNA), the mean oxygen concentration has decreased (- 0.12 ± 0.03 μmol kg-1 yr-1 for the ETSA and - 0.17 ± 0.05 μmol kg-1 yr-1 for the ETNA), and the mean temperature has increased. The optimum multiparameter analysis method is used to track modifications in the AAIW along its path through the South Atlantic Subtropical Gyre. We observe an AAIW layer vertical expansion rate of 1.67 ± 0.71 m yr-1, a decrease in the mean oxygen concentration of - 0.18 ± 0.04 μmol kg-1 yr-1 and an increase in the mean temperature of 0.010 ± 0.005 °C yr-1. Moreover, a similar decrease in oxygen concentrations is observed in the AAIW layer of the studied OMZ regions compared to those in the non-AAIW portions of these OMZs, which indicates strong deoxygenation in this water mass over time. Our results suggest that warming in the AAIW source region and in its extensive temporal displacement through the SASG to the eastern tropical Atlantic Ocean appreciably shifted this water mass toward lower densities with depleted oxygen (increases in ventilation age and oxygen consumption). The warming trend that is reported here suggests that global warming is one of the factors that influence oxygen solubility changes during the deoxygenation and expansion of OMZs.

Marine anoxia and delayed Earth system recovery after the end-Permian extinction

PubMed Central

Lau, Kimberly V.; Maher, Kate; Altiner, Demir; Kelley, Brian M.; Kump, Lee R.; Lehrmann, Daniel J.; Silva-Tamayo, Juan Carlos; Weaver, Karrie L.; Yu, Meiyi; Payne, Jonathan L.

2016-01-01

Delayed Earth system recovery following the end-Permian mass extinction is often attributed to severe ocean anoxia. However, the extent and duration of Early Triassic anoxia remains poorly constrained. Here we use paired records of uranium concentrations ([U]) and 238U/235U isotopic compositions (δ238U) of Upper Permian−Upper Triassic marine limestones from China and Turkey to quantify variations in global seafloor redox conditions. We observe abrupt decreases in [U] and δ238U across the end-Permian extinction horizon, from ∼3 ppm and −0.15‰ to ∼0.3 ppm and −0.77‰, followed by a gradual return to preextinction values over the subsequent 5 million years. These trends imply a factor of 100 increase in the extent of seafloor anoxia and suggest the presence of a shallow oxygen minimum zone (OMZ) that inhibited the recovery of benthic animal diversity and marine ecosystem function. We hypothesize that in the Early Triassic oceans—characterized by prolonged shallow anoxia that may have impinged onto continental shelves—global biogeochemical cycles and marine ecosystem structure became more sensitive to variation in the position of the OMZ. Under this hypothesis, the Middle Triassic decline in bottom water anoxia, stabilization of biogeochemical cycles, and diversification of marine animals together reflect the development of a deeper and less extensive OMZ, which regulated Earth system recovery following the end-Permian catastrophe. PMID:26884155

Marine anoxia and delayed Earth system recovery after the end-Permian extinction.

PubMed

Lau, Kimberly V; Maher, Kate; Altiner, Demir; Kelley, Brian M; Kump, Lee R; Lehrmann, Daniel J; Silva-Tamayo, Juan Carlos; Weaver, Karrie L; Yu, Meiyi; Payne, Jonathan L

2016-03-01

Delayed Earth system recovery following the end-Permian mass extinction is often attributed to severe ocean anoxia. However, the extent and duration of Early Triassic anoxia remains poorly constrained. Here we use paired records of uranium concentrations ([U]) and (238)U/(235)U isotopic compositions (δ(238)U) of Upper Permian-Upper Triassic marine limestones from China and Turkey to quantify variations in global seafloor redox conditions. We observe abrupt decreases in [U] and δ(238)U across the end-Permian extinction horizon, from ∼3 ppm and -0.15‰ to ∼0.3 ppm and -0.77‰, followed by a gradual return to preextinction values over the subsequent 5 million years. These trends imply a factor of 100 increase in the extent of seafloor anoxia and suggest the presence of a shallow oxygen minimum zone (OMZ) that inhibited the recovery of benthic animal diversity and marine ecosystem function. We hypothesize that in the Early Triassic oceans-characterized by prolonged shallow anoxia that may have impinged onto continental shelves-global biogeochemical cycles and marine ecosystem structure became more sensitive to variation in the position of the OMZ. Under this hypothesis, the Middle Triassic decline in bottom water anoxia, stabilization of biogeochemical cycles, and diversification of marine animals together reflect the development of a deeper and less extensive OMZ, which regulated Earth system recovery following the end-Permian catastrophe.

Sink or link? The bacterial role in benthic carbon cycling in the Arabian sea oxygen minimum zone

NASA Astrophysics Data System (ADS)

Pozzato, L.; Van Oevelen, D.; Moodley, L.; Soetaert, K.; Middelburg, J. J.

2013-06-01

The bacterial loop, the consumption of dissolved organic matter (DOM) by bacteria and subsequent transfer of bacterial carbon to higher trophic levels, plays a prominent role in pelagic aquatic food webs. However, its role in sedimentary ecosystems is not well documented. Here we present the results of isotope tracer experiments performed under in situ oxygen conditions in sediments from inside and outside the Arabian Sea Oxygen Minimum Zone (OMZ) to study the importance of the microbial loop in this setting. Particulate organic matter, added as phytodetritus, was processed by bacteria, protozoa and metazoans, while dissolved organic matter was processed only by bacteria and there was very little, if any, transfer to higher trophic levels within the experimental period. This lack of significant transfer of bacterial-derived carbon to metazoan consumers indicates that the bacterial loop is rather inefficient in these sediments. Moreover, metazoans directly consume labile particulate organic matter resources and thus compete with bacteria for phytodetritus.

Single-cell genomics reveals co-metabolic interactions within uncultivated Marine Group A bacteria

NASA Astrophysics Data System (ADS)

Hawley, A. K.; Hallam, S. J.

2016-02-01

Marine Group A (MGA) bacteria represent a ubiquitous and abundant candidate phylum enriched in oxygen minimum zones (OMZs) and the deep ocean. Despite MGA prevalence little is known about their ecology and biogeochemistry. Here we chart the metabolic potential of 26 MGA single-cell amplified genomes sourced from different environments spanning ecothermodynamic gradients including open ocean waters, OMZs and methanogenic environments including a terephthalate-degrading bioreactor. Metagenomic contig recruitment to SAGs combined with tetra-nucleotide frequency distribution patterns resolved nine MGA population genome bins. All population genomes exhibited genomic streamlining with open ocean MGA being the most reduced. Different strategies for carbohydrate utilization, carbon fixation energy metabolism and respiratory pathways were identified between population genome bins, including various roles in the nitrogen and sulfur cycles. MGA inhabiting OMZ oxyclines encoded genes for partial denitrification with potential to feed into anammox and nitrification as well as a polysulfide reductase with a potential role in the cryptic sulfur cycle. MGA inhabiting anoxic waters, encoded NiFe hydrogenase and nitrous oxide reductase with the potential to complete partial denitrification pathways previously linked to sulfur oxidation in SUP05 bacteria. MGA from methanogenic environments encoded genes mediating cascading syntrophic interactions with fatty acid degraders and methanogens including reverse electron transport potential. The MGA phylum appears to have evolved alternative metabolic innovations adapting specific subgroups to occupy specific niches along ecothermodynamic gradients. Additionally, expression of MGA genes from different OMZ environments supports that these subgroups manifest an increasing propensity for co-metabolic interactions under energy limiting conditions that mandates a cooperative mode of existence with important implications for C, N and S cycling in marine ecosystems.

Nitrite oxidation in the upper water column and oxygen minimum zone of the eastern tropical North Pacific Ocean

PubMed Central

Beman, J Michael; Leilei Shih, Joy; Popp, Brian N

2013-01-01

Nitrogen (N) is an essential nutrient in the sea and its distribution is controlled by microorganisms. Within the N cycle, nitrite (NO2−) has a central role because its intermediate redox state allows both oxidation and reduction, and so it may be used by several coupled and/or competing microbial processes. In the upper water column and oxygen minimum zone (OMZ) of the eastern tropical North Pacific Ocean (ETNP), we investigated aerobic NO2− oxidation, and its relationship to ammonia (NH3) oxidation, using rate measurements, quantification of NO2−-oxidizing bacteria via quantitative PCR (QPCR), and pyrosequencing. 15NO2− oxidation rates typically exhibited two subsurface maxima at six stations sampled: one located below the euphotic zone and beneath NH3 oxidation rate maxima, and another within the OMZ. 15NO2− oxidation rates were highest where dissolved oxygen concentrations were <5 μM, where NO2− accumulated, and when nitrate (NO3−) reductase genes were expressed; they are likely sustained by NO3− reduction at these depths. QPCR and pyrosequencing data were strongly correlated (r2=0.79), and indicated that Nitrospina bacteria numbered up to 9.25% of bacterial communities. Different Nitrospina groups were distributed across different depth ranges, suggesting significant ecological diversity within Nitrospina as a whole. Across the data set, 15NO2− oxidation rates were decoupled from 15NH4+ oxidation rates, but correlated with Nitrospina (r2=0.246, P<0.05) and NO2− concentrations (r2=0.276, P<0.05). Our findings suggest that Nitrospina have a quantitatively important role in NO2− oxidation and N cycling in the ETNP, and provide new insight into their ecology and interactions with other N-cycling processes in this biogeochemically important region of the ocean. PMID:23804152

Anammox bacteria and the anaerobic oxidation of ammonium in the oxygen minimum zone off northern Chile

NASA Astrophysics Data System (ADS)

Galán, Alexander; Molina, Verónica; Thamdrup, Bo; Woebken, Dagmar; Lavik, Gaute; Kuypers, Marcel M. M.; Ulloa, Osvaldo

2009-07-01

Anammox is the anaerobic oxidation of ammonium by nitrite or nitrate to yield N 2. This process, along with conventional denitrification, contributes to nitrogen loss in oxygen-deficient systems. Anammox is performed by a special group of bacteria belonging to the Planctomycetes phylum. However, information about the distribution, activity, and controlling factors of these anammox bacteria is still limited. Herein, we examine the phylogenetic diversity, vertical distribution, and activity of anammox bacteria in the coastal upwelling region and oxygen minimum zone off northern Chile. The phylogeny of anammox bacteria was studied using primers designed to specifically target 16S rRNA genes from Planctomycetes in samples taken during a cruise in 2004. Anammox bacteria-like sequences affiliated with Candidatus "Scalindua spp." dominated the 16S rRNA gene clone library. However, 62% of the sequences subgrouped separately within this cluster and together with a single sequence retrieved from the suboxic zone of the freshwater Lake Tanganyika. The vertical distribution and activity of anammox bacteria were explored through CARD-FISH (fluorescence in situ hybridization with catalyzed reporter deposition) and 15N labeling incubations, respectively, at two different open-ocean stations during a second cruise in 2005. Anammox bacterial CARD-FISH counts (up to 3000 cells ml -1) and activity (up to 5.75 nmol N 2 L -1 d -1) were only detected at the station subjected directly to the upwelling influence. Anammox cell abundance and activity were highest at 50 m depth, which is the upper part of the OMZ. In this layer, a high abundance of cyanobacteria and a marked nitrogen deficit were also observed. Thus, our results show the presence of a new subcluster within the marine anammox phylogeny and indicate high vertical variability in the abundance and activity of anammox bacteria that could be related to an intensification of carbon and nitrogen cycling in the upper part of the OMZ.

Oxygen Minimum Zones in Miniature: Microbial Community Diversity, Activity, and Assembly Across Oxygen Gradients in Meromictic Marine Lakes, Palau

NASA Astrophysics Data System (ADS)

Beman, J. M.

2016-02-01

Oxygen minimum zones (OMZs) play a central role in biogeochemical cycles and are expanding as a consequence of climate change, yet our understanding of these changes is limited by a lack of systematic analyses of low-oxygen ecosystems. In particular, forecasting biogeochemical feedbacks to deoxygenation requires detailed knowledge of microbial community assembly and activity as oxygen declines. Marine `lakes'—isolated bodies of seawater surrounded by land—are an ideal comparative system, as they provide a pronounced oxygen gradient extending from well-mixed, holomictic lakes to stratified, meromictic lakes that vary in their extent of anoxia. We examined 13 marine lakes using pyrosequencing of 16S rRNA genes, quantitative PCR for nitrogen (N)- and sulfur (S)-cycling functional genes and groups, and N- and carbon (C)-cycling rate measurements. All lakes were inhabited by well-known marine bacteria, demonstrating the broad relevance of this study system. Microbial diversity was typically highest in the anoxic monimolimnion of meromictic lakes, with marine cyanobacteria, SAR11, and other common bacteria replaced by anoxygenic phototrophs, sulfate-reducing bacteria (SRBs), and SAR406 in the monimolimnion. Denitrifier nitrite reductase (nirS) genes were also detected alongside high abundances (>106 ml-1) of dissimilatory sulfite reductase (dsrA) genes from SRBs in the monimolimnion. Sharp changes in community structure were linked to environmental gradients (constrained variation in redundancy analysis=76%) and deterministic processes dominated community assembly at all depths (nearest taxon index values >4). These results indicate that oxygen is a strong, deterministic driver of microbial community assembly. We also observed enhanced N- and C-cycling rates along the transition from hypoxic to anoxic to sulfidic conditions, suggesting that microbial communities form a positive feedback loop that may accelerate deoxygenation and OMZ expansion.

Sediment Cd and Mo accumulation in the oxygen-minimum zone off western Baja California linked to global climate over the past 52 kyr

USGS Publications Warehouse

Dean, W.E.; Zheng, Yen; Ortiz, J.D.; VanGeen, A.

2006-01-01

Concentrations of organic carbon (orgC), cadmium (Cd), and molybdenum (Mo) were measured in two sediment cores raised from depths of 430 and 700 m within the oxygen-minimum zone (OMZ) off southern Baja California at a temporal resolution of e10.5 kyr over the past 52 kyr. These records are supplemented with diffuse spectral reflectance (DSR) measurements obtained on board ship soon after collection at a resolution of e10.05 kyr. In the core from 700 m depth, a component extracted from the DSR data and the three geochemical proxies generally vary in concert with each other and over a wide range (4-22% orgC; 1-40 mg/kg Cd; 5-120 mg/kg Mo). Intervals of increased orgC, Cd, and Mo accumulation generally correspond to warm periods recorded in the oxygen-isotopic composition of Greenland ice, with the exception of the Bolling/Allerod which is only weakly expressed off Baja California. Concentrations of the biogenic proxies are higher in the core from 430 m depth, but erratic sediment accumulation before 15 ka precludes dating of the older intervals that are laminated and contain elevated orgC, Cd, and Mo concentrations. The new data provide further evidence of an intimate teleconnection between global climate and the intensity of the OMZ and/or productivity along the western margin of North America. On the basis of a comparison with Cd and Mo records collected elsewhere in the region, we conclude that productivity may actually have varied off southern Baja California by no more than a factor of 2 over the past 52 kyr. Copyright 2006 by the American Geophysical Union.

Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone.

PubMed

Ganesh, Sangita; Bristow, Laura A; Larsen, Morten; Sarode, Neha; Thamdrup, Bo; Stewart, Frank J

2015-12-01

The genetic composition of marine microbial communities varies at the microscale between particle-associated (PA; >1.6 μm) and free-living (FL; 0.2-1.6 μm) niches. It remains unclear, however, how metabolic activities differ between PA and FL fractions. We combined rate measurements with metatranscriptomics to quantify PA and FL microbial activity in the oxygen minimum zone (OMZ) of the Eastern Tropical North Pacific, focusing on dissimilatory processes of the nitrogen (N) cycle. Bacterial gene counts were 8- to 15-fold higher in the FL compared with the PA fraction. However, rates of all measured N cycle processes, excluding ammonia oxidation, declined significantly following particle (>1.6 μm) removal. Without particles, rates of nitrate reduction to nitrite (1.5-9.4nMNd(-1)) fell to zero and N2 production by denitrification (0.5-1.7nMNd(-1)) and anammox (0.3-1.9nMNd(-1)) declined by 53-85%. The proportional representation of major microbial taxa and N cycle gene transcripts in metatranscriptomes followed fraction-specific trends. Transcripts encoding nitrate reductase were uniform among PA and FL fractions, whereas anammox-associated transcripts were proportionately enriched up to 15-fold in the FL fraction. In contrast, transcripts encoding enzymes for N2O and N2 production by denitrification were enriched up to 28-fold in PA samples. These patterns suggest that the majority of N cycle activity, excluding N2O and N2 production by denitrification, is confined to a FL majority that is critically dependent on access to particles, likely as a source of organic carbon and inorganic N. Variable particle distributions may drive heterogeneity in N cycle activity and gene expression in OMZs.

Oxygen at Nanomolar Levels Reversibly Suppresses Process Rates and Gene Expression in Anammox and Denitrification in the Oxygen Minimum Zone off Northern Chile

PubMed Central

Stewart, Frank J.; Thamdrup, Bo; De Brabandere, Loreto; Revsbech, Niels Peter; Ulloa, Osvaldo; Canfield, Don E.; DeLong, Edward F.

2014-01-01

ABSTRACT A major percentage (20 to 40%) of global marine fixed-nitrogen loss occurs in oxygen minimum zones (OMZs). Concentrations of O2 and the sensitivity of the anaerobic N2-producing processes of anammox and denitrification determine where this loss occurs. We studied experimentally how O2 at nanomolar levels affects anammox and denitrification rates and the transcription of nitrogen cycle genes in the anoxic OMZ off Chile. Rates of anammox and denitrification were reversibly suppressed, most likely at the enzyme level. Fifty percent inhibition of N2 and N2O production by denitrification was achieved at 205 and 297 nM O2, respectively, whereas anammox was 50% inhibited at 886 nM O2. Coupled metatranscriptomic analysis revealed that transcripts encoding nitrous oxide reductase (nosZ), nitrite reductase (nirS), and nitric oxide reductase (norB) decreased in relative abundance above 200 nM O2. This O2 concentration did not suppress the transcription of other dissimilatory nitrogen cycle genes, including nitrate reductase (narG), hydrazine oxidoreductase (hzo), and nitrite reductase (nirK). However, taxonomic characterization of transcripts suggested inhibition of narG transcription in gammaproteobacteria, whereas the transcription of anammox narG, whose gene product is likely used to oxidatively replenish electrons for carbon fixation, was not inhibited. The taxonomic composition of transcripts differed among denitrification enzymes, suggesting that distinct groups of microorganisms mediate different steps of denitrification. Sulfide addition (1 µM) did not affect anammox or O2 inhibition kinetics but strongly stimulated N2O production by denitrification. These results identify new O2 thresholds for delimiting marine nitrogen loss and highlight the utility of integrating biogeochemical and metatranscriptomic analyses. PMID:25352619

Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone

PubMed Central

Ganesh, Sangita; Bristow, Laura A; Larsen, Morten; Sarode, Neha; Thamdrup, Bo; Stewart, Frank J

2015-01-01

The genetic composition of marine microbial communities varies at the microscale between particle-associated (PA; >1.6 μm) and free-living (FL; 0.2–1.6 μm) niches. It remains unclear, however, how metabolic activities differ between PA and FL fractions. We combined rate measurements with metatranscriptomics to quantify PA and FL microbial activity in the oxygen minimum zone (OMZ) of the Eastern Tropical North Pacific, focusing on dissimilatory processes of the nitrogen (N) cycle. Bacterial gene counts were 8- to 15-fold higher in the FL compared with the PA fraction. However, rates of all measured N cycle processes, excluding ammonia oxidation, declined significantly following particle (>1.6 μm) removal. Without particles, rates of nitrate reduction to nitrite (1.5–9.4nMNd−1) fell to zero and N2 production by denitrification (0.5–1.7nMNd−1) and anammox (0.3–1.9nMNd−1) declined by 53–85%. The proportional representation of major microbial taxa and N cycle gene transcripts in metatranscriptomes followed fraction-specific trends. Transcripts encoding nitrate reductase were uniform among PA and FL fractions, whereas anammox-associated transcripts were proportionately enriched up to 15-fold in the FL fraction. In contrast, transcripts encoding enzymes for N2O and N2 production by denitrification were enriched up to 28-fold in PA samples. These patterns suggest that the majority of N cycle activity, excluding N2O and N2 production by denitrification, is confined to a FL majority that is critically dependent on access to particles, likely as a source of organic carbon and inorganic N. Variable particle distributions may drive heterogeneity in N cycle activity and gene expression in OMZs. PMID:25848875

Faunal responses to oxygen gradients on the Pakistan margin: A comparison of foraminiferans, macrofauna and megafauna

NASA Astrophysics Data System (ADS)

Gooday, A. J.; Levin, L. A.; Aranda da Silva, A.; Bett, B. J.; Cowie, G. L.; Dissard, D.; Gage, J. D.; Hughes, D. J.; Jeffreys, R.; Lamont, P. A.; Larkin, K. E.; Murty, S. J.; Schumacher, S.; Whitcraft, C.; Woulds, C.

2009-03-01

The Pakistan Margin is characterised by a strong mid-water oxygen minimum zone (OMZ) that intercepts the seabed at bathyal depths (150-1300 m). We investigated whether faunal abundance and diversity trends were similar among protists (foraminiferans and gromiids), metazoan macrofauna and megafauna along a transect (140-1850 m water depth) across the OMZ during the 2003 intermonsoon (March-May) and late/post-monsoon (August-October) seasons. All groups exhibited some drop in abundance in the OMZ core (250-500 m water depth; O 2: 0.10-0.13 mL L -1=4.46-5.80 μM) but to differing degrees. Densities of foraminiferans >63 μm were slightly depressed at 300 m, peaked at 738 m, and were much lower at deeper stations. Foraminiferans >300 μm were the overwhelmingly dominant macrofaunal organisms in the OMZ core. Macrofaunal metazoans reached maximum densities at 140 m depth, with additional peaks at 850, 940 and 1850 m where foraminiferans were less abundant. The polychaete Linopherus sp. was responsible for a macrofaunal biomass peak at 950 m. Apart from large swimming animals (fish and natant decapods), metazoan megafauna were absent between 300 and 900 m (O 2 <0.14-0.15 mL L -1=6.25-6.69 μM) but were represented by a huge, ophiuroid-dominated abundance peak at 1000 m (O 2 ˜0.15-0.18 mL L -1=6.69-8.03 μM). Gromiid protists were confined largely to depths below 1150 m (O 2 >0.2 mL L -1=8.92 μM). The progressively deeper abundance peaks for foraminiferans (>63 μm), Linopherus sp. and ophiuroids probably represent lower OMZ boundary edge effects and suggest a link between body size and tolerance of hypoxia. Macro- and megafaunal organisms collected between 800 and 1100 m were dominated by a succession of different taxa, indicating that the lower part of the OMZ is also a region of rapid faunal change. Species diversity was depressed in all groups in the OMZ core, but this was much more pronounced for macrofauna and megafauna than for foraminiferans. Oxygen levels strongly influenced the taxonomic composition of all faunal groups. Calcareous foraminiferans dominated the seasonally and permanently hypoxic sites (136-300 m); agglutinated foraminiferans were relatively more abundant at deeper stations where oxygen concentrations were >0.13 mL L -1(=5.80 μM). Polychaetes were the main macrofaunal taxon within the OMZ; calcareous macrofauna and megafauna (molluscs and echinoderms) were rare or absent where oxygen levels were lowest. The rarity of larger animals between 300 and 700 m on the Pakistan Margin, compared with the abundant macrofauna in the OMZ core off Oman, is the most notable contrast between the two sides of the Arabian Sea. This difference probably reflects the slightly higher oxygen levels and better food quality on the western side.

Cytherellid species (Ostracoda) and their significance to the Late Quaternary events in the Santos Basin, Brazil

USGS Publications Warehouse

Bergue, C.T.; Coimbra, J.C.; Cronin, T. M.

2007-01-01

Four autochthonous cytherellid species (Cytherella serratula (BRADY, 1880), C. hermargentina WHATLEY et al. 1998, C. pleistocenica sp. nov. and C. santosensis sp. nov.) have been identified from two offshore cores (44 samples) within the Santos Basin. The distribution of these ostracodes is controlled by local hydrological conditions such as the temperature and, possibly, the oxygen minimum zone (OMZ). However, these factors cannot explain completely the species occurrence in the analysed cores, and relative sea level changes and productivity variation driven by climatic changes are proposed as additional explanations for the faunal distribution pattern. ?? E. Schweizerbart'sche Verlagsbuchhandlung (Na??gele u. Obermiller), 2007.

Climate and marine biogeochemistry during the Holocene from transient model simulations

NASA Astrophysics Data System (ADS)

Segschneider, Joachim; Schneider, Birgit; Khon, Vyacheslav

2018-06-01

Climate and marine biogeochemistry changes over the Holocene are investigated based on transient global climate and biogeochemistry model simulations over the last 9500 years. The simulations are forced by accelerated and non-accelerated orbital parameters, respectively, and atmospheric pCO2, CH4, and N2O. The analysis focusses on key climatic parameters of relevance to the marine biogeochemistry, and on the physical and biogeochemical processes that drive atmosphere-ocean carbon fluxes and changes in the oxygen minimum zones (OMZs). The simulated global mean ocean temperature is characterized by a mid-Holocene cooling and a late Holocene warming, a common feature among Holocene climate simulations which, however, contradicts a proxy-derived mid-Holocene climate optimum. As the most significant result, and only in the non-accelerated simulation, we find a substantial increase in volume of the OMZ in the eastern equatorial Pacific (EEP) continuing into the late Holocene. The concurrent increase in apparent oxygen utilization (AOU) and age of the water mass within the EEP OMZ can be attributed to a weakening of the deep northward inflow into the Pacific. This results in a large-scale mid-to-late Holocene increase in AOU in most of the Pacific and hence the source regions of the EEP OMZ waters. The simulated expansion of the EEP OMZ raises the question of whether the deoxygenation that has been observed over the last 5 decades could be a - perhaps accelerated - continuation of an orbitally driven decline in oxygen. Changes in global mean biological production and export of detritus remain of the order of 10 %, with generally lower values in the mid-Holocene. The simulated atmosphere-ocean CO2 flux would result in atmospheric pCO2 changes of similar magnitudes to those observed for the Holocene, but with different timing. More technically, as the increase in EEP OMZ volume can only be simulated with the non-accelerated model simulation, non-accelerated model simulations are required for an analysis of the marine biogeochemistry in the Holocene. Notably, the long control experiment also displays similar magnitude variability to the transient experiment for some parameters. This indicates that also long control runs are required when investigating Holocene climate and marine biogeochemistry, and that some of the Holocene variations could be attributed to internal variability of the atmosphere-ocean system.

Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones

PubMed Central

Glass, Jennifer B.; Kretz, Cecilia B.; Ganesh, Sangita; Ranjan, Piyush; Seston, Sherry L.; Buck, Kristen N.; Landing, William M.; Morton, Peter L.; Moffett, James W.; Giovannoni, Stephen J.; Vergin, Kevin L.; Stewart, Frank J.

2015-01-01

Iron (Fe) and copper (Cu) are essential cofactors for microbial metalloenzymes, but little is known about the metalloenyzme inventory of anaerobic marine microbial communities despite their importance to the nitrogen cycle. We compared dissolved O2, NO3−, NO2−, Fe and Cu concentrations with nucleic acid sequences encoding Fe and Cu-binding proteins in 21 metagenomes and 9 metatranscriptomes from Eastern Tropical North and South Pacific oxygen minimum zones and 7 metagenomes from the Bermuda Atlantic Time-series Station. Dissolved Fe concentrations increased sharply at upper oxic-anoxic transition zones, with the highest Fe:Cu molar ratio (1.8) occurring at the anoxic core of the Eastern Tropical North Pacific oxygen minimum zone and matching the predicted maximum ratio based on data from diverse ocean sites. The relative abundance of genes encoding Fe-binding proteins was negatively correlated with O2, driven by significant increases in genes encoding Fe-proteins involved in dissimilatory nitrogen metabolisms under anoxia. Transcripts encoding cytochrome c oxidase, the Fe- and Cu-containing terminal reductase in aerobic respiration, were positively correlated with O2 content. A comparison of the taxonomy of genes encoding Fe- and Cu-binding vs. bulk proteins in OMZs revealed that Planctomycetes represented a higher percentage of Fe genes while Thaumarchaeota represented a higher percentage of Cu genes, particularly at oxyclines. These results are broadly consistent with higher relative abundance of genes encoding Fe-proteins in the genome of a marine planctomycete vs. higher relative abundance of genes encoding Cu-proteins in the genome of a marine thaumarchaeote. These findings highlight the importance of metalloenzymes for microbial processes in oxygen minimum zones and suggest preferential Cu use in oxic habitats with Cu > Fe vs. preferential Fe use in anoxic niches with Fe > Cu. PMID:26441925

Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones.

PubMed

Glass, Jennifer B; Kretz, Cecilia B; Ganesh, Sangita; Ranjan, Piyush; Seston, Sherry L; Buck, Kristen N; Landing, William M; Morton, Peter L; Moffett, James W; Giovannoni, Stephen J; Vergin, Kevin L; Stewart, Frank J

2015-01-01

Iron (Fe) and copper (Cu) are essential cofactors for microbial metalloenzymes, but little is known about the metalloenyzme inventory of anaerobic marine microbial communities despite their importance to the nitrogen cycle. We compared dissolved O2, NO[Formula: see text], NO[Formula: see text], Fe and Cu concentrations with nucleic acid sequences encoding Fe and Cu-binding proteins in 21 metagenomes and 9 metatranscriptomes from Eastern Tropical North and South Pacific oxygen minimum zones and 7 metagenomes from the Bermuda Atlantic Time-series Station. Dissolved Fe concentrations increased sharply at upper oxic-anoxic transition zones, with the highest Fe:Cu molar ratio (1.8) occurring at the anoxic core of the Eastern Tropical North Pacific oxygen minimum zone and matching the predicted maximum ratio based on data from diverse ocean sites. The relative abundance of genes encoding Fe-binding proteins was negatively correlated with O2, driven by significant increases in genes encoding Fe-proteins involved in dissimilatory nitrogen metabolisms under anoxia. Transcripts encoding cytochrome c oxidase, the Fe- and Cu-containing terminal reductase in aerobic respiration, were positively correlated with O2 content. A comparison of the taxonomy of genes encoding Fe- and Cu-binding vs. bulk proteins in OMZs revealed that Planctomycetes represented a higher percentage of Fe genes while Thaumarchaeota represented a higher percentage of Cu genes, particularly at oxyclines. These results are broadly consistent with higher relative abundance of genes encoding Fe-proteins in the genome of a marine planctomycete vs. higher relative abundance of genes encoding Cu-proteins in the genome of a marine thaumarchaeote. These findings highlight the importance of metalloenzymes for microbial processes in oxygen minimum zones and suggest preferential Cu use in oxic habitats with Cu > Fe vs. preferential Fe use in anoxic niches with Fe > Cu.

North Pacific deglacial hypoxic events linked to abrupt ocean warming

USGS Publications Warehouse

Praetorius, Summer K; Mix, Alan C.; Davies, Maureen H.; Wolhowe, Matthew D; Addison, Jason A.; Prahl, Frederick G

2015-01-01

Marine sediments from the North Pacific document two episodes of expansion and strengthening of the subsurface oxygen minimum zone (OMZ) accompanied by seafloor hypoxia during the last deglacial transition1, 2, 3, 4. The mechanisms driving this hypoxia remain under debate1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11. We present a new high-resolution alkenone palaeotemperature reconstruction from the Gulf of Alaska that reveals two abrupt warming events of 4–5 degrees Celsius at the onset of the Bølling and Holocene intervals that coincide with sudden shifts to hypoxia at intermediate depths. The presence of diatomaceous laminations and hypoxia-tolerant benthic foraminiferal species, peaks in redox-sensitive trace metals12, 13, and enhanced 15N/14N ratio of organic matter13, collectively suggest association with high export production. A decrease in 18O/16O values of benthic foraminifera accompanying the most severe deoxygenation event indicates subsurface warming of up to about 2 degrees Celsius. We infer that abrupt warming triggered expansion of the North Pacific OMZ through reduced oxygen solubility and increased marine productivity via physiological effects; following initiation of hypoxia, remobilization of iron from hypoxic sediments could have provided a positive feedback on ocean deoxygenation through increased nutrient utilization and carbon export. Such a biogeochemical amplification process implies high sensitivity of OMZ expansion to warming.

Gene-centric approach to integrating environmental genomics and biogeochemical models.

PubMed

Reed, Daniel C; Algar, Christopher K; Huber, Julie A; Dick, Gregory J

2014-02-04

Rapid advances in molecular microbial ecology have yielded an unprecedented amount of data about the evolutionary relationships and functional traits of microbial communities that regulate global geochemical cycles. Biogeochemical models, however, are trailing in the wake of the environmental genomics revolution, and such models rarely incorporate explicit representations of bacteria and archaea, nor are they compatible with nucleic acid or protein sequence data. Here, we present a functional gene-based framework for describing microbial communities in biogeochemical models by incorporating genomics data to provide predictions that are readily testable. To demonstrate the approach in practice, nitrogen cycling in the Arabian Sea oxygen minimum zone (OMZ) was modeled to examine key questions about cryptic sulfur cycling and dinitrogen production pathways in OMZs. Simulations support previous assertions that denitrification dominates over anammox in the central Arabian Sea, which has important implications for the loss of fixed nitrogen from the oceans. Furthermore, cryptic sulfur cycling was shown to attenuate the secondary nitrite maximum often observed in OMZs owing to changes in the composition of the chemolithoautotrophic community and dominant metabolic pathways. Results underscore the need to explicitly integrate microbes into biogeochemical models rather than just the metabolisms they mediate. By directly linking geochemical dynamics to the genetic composition of microbial communities, the method provides a framework for achieving mechanistic insights into patterns and biogeochemical consequences of marine microbes. Such an approach is critical for informing our understanding of the key role microbes play in modulating Earth's biogeochemistry.

Earth-System Scales of Biodiversity Variability in Shallow Continental Margin Seafloor Ecosystems

NASA Astrophysics Data System (ADS)

Moffitt, S. E.; White, S. M.; Hill, T. M.; Kennett, J.

2015-12-01

High-resolution paleoceanographic sedimentary sequences allow for the description of ecosystem sensitivity to earth-system scales of climate and oceanographic change. Such archives from Santa Barbara Basin, California record the ecological consequences to seafloor ecosystems of climate-forced shifts in the California Current Oxygen Minimum Zone (OMZ). Here we use core MV0508-20JPC dated to 735,000±5,000 years ago (Marine Isotope Stage 18) as a "floating window" of millennial-scale ecological variability. For this investigation, previously published archives of planktonic δ18O (Globigerina bulloides) record stadial and interstadial oscillations in surface ocean temperature. Core MV0508-20JPC is an intermittently laminated archive, strongly influenced by the California Current OMZ, with continuously preserved benthic foraminifera and discontinuously preserved micro-invertebrates, including ophiuroids, echinoderms, ostracods, gastropods, bivalves and scaphopods. Multivariate statistical approaches, such as ordinations and cluster analyses, describe climate-driven changes in both foraminiferal and micro-invertebrate assemblages. Statistical ordinations illustrate that the shallow continental margin seafloor underwent predictable phase-shifts in oxygenation and biodiversity across stadial and interstadial events. A narrow suite of severely hypoxic taxa characterized foraminiferal communities from laminated intervals, including Bolivina tumida, Globobulimina spp., and Nonionella stella. Foraminiferal communities from bioturbated intervals are diverse and >60% similar to each other, and they are associated with echinoderm, ostracod and mollusc fossils. As with climate shifts in the latest Quaternary, there is a sensitive benthic ecosystem response in mid-Pleistocene continental margins to climatically related changes in OMZ strength.

Climate oscillations reflected in the microbiome of Arabian Sea sediments

NASA Astrophysics Data System (ADS)

Orsi, W. D.; Coolen, M.; He, L.; Wuchter, C.; Irigoien, X.; Hemingway, J. D.; Johnson, C.; Chust, G.; Moore, K.; Galy, V.; Giosan, L.

2016-12-01

More than 1029 microbial cells reside in marine sediment, but the forces underlying their vertical distribution are poorly understood. Sedimentary communities are shaped to a large extent through selection by the modern environment such as energy availability and porosity. However, some microbes within certain settings reflect depositional conditions suggesting they have experienced no or weak selection after burial. Here, we show that in sediments underlying the Arabian Sea oxygen minimum zone (OMZ), the stratigraphy of some subsisting bacteria records their selection to changing paleo-environmental conditions over relatively short (e.g., centennial to millennial) timescales. We performed the highest resolved sedimentary metagenomic profile to date and coupled it with multiple paleoceanographic proxies. Despite being vertically separated, bacterial communities deposited under recurring low-oxygen conditions are more similar to one another than those deposited under higher oxygen. Furthermore, genomic potential for denitrification recurringly correlates with OMZ strength and paleo-denitrification proxies. In contrast, the genomic potential for oxygen-dependent metabolism, specifically genes encoding mono-oxygenases, is correlated with bioturbated sediment intervals deposited under higher oxygen concentrations. These patterns correlate strongly with the strength of the OMZ whose strength is teleconnected to North Atlantic climate. While the primary electron acceptors nitrate and nitrite are depleted at the sediment surface, metagenomes revealed mixed acid and Entner-Dourdoroff fermentation pathways encoded by many of the denitrifier groups. Fermentation has thus enabled the long-term subsistence of these bacteria whose stratigraphy serves as a proxy for changing paleoceanographic conditions and potential climate feedback mechanisms.

Ammonia and nitrite oxidation in the Eastern Tropical North Pacific

NASA Astrophysics Data System (ADS)

Peng, Xuefeng; Fuchsman, Clara A.; Jayakumar, Amal; Oleynik, Sergey; Martens-Habbena, Willm; Devol, Allan H.; Ward, Bess B.

2015-12-01

Nitrification plays a key role in the marine nitrogen (N) cycle, including in oceanic oxygen minimum zones (OMZs), which are hot spots for denitrification and anaerobic ammonia oxidation (anammox). Recent evidence suggests that nitrification links the source (remineralized organic matter) and sink (denitrification and anammox) of fixed N directly in the steep oxycline in the OMZs. We performed shipboard incubations with 15N tracers to characterize the depth distribution of nitrification in the Eastern Tropical North Pacific (ETNP). Additional experiments were conducted to investigate photoinhibition. Allylthiourea (ATU) was used to distinguish the contribution of archaeal and bacterial ammonia oxidation. The abundance of archaeal and β-proteobacterial ammonia monooxygenase gene subunit A (amoA) was determined by quantitative polymerase chain reaction. The rates of ammonia and nitrite oxidation showed distinct subsurface maxima, with the latter slightly deeper than the former. The ammonia oxidation maximum coincided with the primary nitrite concentration maximum, archaeal amoA gene maximum, and the subsurface nitrous oxide maximum. Negligible rates of ammonia oxidation were found at anoxic depths, where high rates of nitrite oxidation were measured. Archaeal amoA gene abundance was generally 1 to 2 orders of magnitude higher than bacterial amoA gene abundance, and inhibition of ammonia-oxidizing bacteria with 10 μM ATU did not affect ammonia oxidation rates, indicating the dominance of archaea in ammonia oxidation. These results depict highly dynamic activities of ammonia and nitrite oxidation in the oxycline of the ETNP OMZ.

Ventilation rates and activity levels of juvenile jumbo squid under metabolic suppression in the oxygen minimum zone.

PubMed

Trübenbach, Katja; Pegado, Maria R; Seibel, Brad A; Rosa, Rui

2013-02-01

The Humboldt (jumbo) squid, Dosidicus gigas, is a part-time resident of the permanent oxygen minimum zone (OMZ) in the Eastern Tropical Pacific and, thereby, it encounters oxygen levels below its critical oxygen partial pressure. To better understand the ventilatory mechanisms that accompany the process of metabolic suppression in these top oceanic predators, we exposed juvenile D. gigas to the oxygen levels found in the OMZ (1% O(2), 1 kPa, 10 °C) and measured metabolic rate, activity cycling patterns, swimming mode, escape jet (burst) frequency, mantle contraction frequency and strength, stroke volume and oxygen extraction efficiency. In normoxia, metabolic rate varied between 14 and 29 μmol O(2) g(-1) wet mass h(-1), depending on the level of activity. The mantle contraction frequency and strength were linearly correlated and increased significantly with activity level. Additionally, an increase in stroke volume and ventilatory volume per minute was observed, followed by a mantle hyperinflation process during high activity periods. Squid metabolic rate dropped more than 75% during exposure to hypoxia. Maximum metabolic rate was not achieved under such conditions and the metabolic scope was significantly decreased. Hypoxia changed the relationship between mantle contraction strength and frequency from linear to polynomial with increasing activity, indicating that, under hypoxic conditions, the jumbo squid primarily increases the strength of mantle contraction and does not regulate its frequency. Under hypoxia, jumbo squid also showed a larger inflation period (reduced contraction frequency) and decreased relaxed mantle diameter (shortened diffusion pathway), which optimize oxygen extraction efficiency (up to 82%/34%, without/with consideration of 60% potential skin respiration). Additionally, they breathe 'deeply', with more powerful contractions and enhanced stroke volume. This deep-breathing behavior allows them to display a stable ventilatory volume per minute, and explains the maintenance of the squid's cycling activity under such O(2) conditions. During hypoxia, the respiratory cycles were shorter in length but increased in frequency. This was accompanied by an increase in the number of escape jets during active periods and a faster switch between swimming modes. In late hypoxia (onset ~170 ± 10 min), all the ventilatory processes were significantly reduced and followed by a lethargic state, a behavior that seems closely associated with the process of metabolic suppression and enables the squid to extend its residence time in the OMZ.

A coordinated increase in export production and denitrification on the Costa Rica margin during the early Pleistocene

NASA Astrophysics Data System (ADS)

Yuan, V.; Bascom, C., Jr.; Robinson, R. S.

2013-12-01

The oceanic carbon, nitrogen, and oxygen cycles are linked through export production, oxygen consumption, and denitrification. Denitrification, the bacterial reduction of nitrate, is an anoxic process that serves as the primary sink for fixed nitrogen in the ocean. The Eastern Tropical Pacific (ETP) houses an oxygen minimum zone (OMZ) where pelagic denitrification proceeds as a result of both large scale circulation and regionally high export of organic matter that fuels oxygen consumption in the subsurface. Here we present a 2.4 million year long record of denitrification and productivity in the ETP using ODP Site 1242. Site 1242 is located ~70 km off the west coast of Costa Rica, beneath the OMZ. Downcore records of bulk sedimentary nitrogen isotope values (δ15N) and opal and organic matter accumulation rates show near synchronous increases in δ15N values and biogenic sediment accumulation at approximately 1.6 My. The concurrent increase in the denitrification and productivity proxies suggests that regional oxygen demand could be driving the increase in denitrification observed at Site 1242. This is in contrast to what is observed elsewhere, where export productivity and denitrification changes do not appear to be coupled locally. Moreover, the timing of this increase is distinct from a previously observed increase in δ15N at California Margin Site 1012 which occurred at ~2.1 Ma (Liu et al., G-cubed, 2008) and is also attributed to enhanced denitrification in the OMZ. These differences suggest that the Site 1242 record reflects a purely local or regional process. Interestingly, the later increase in denitrification at 1.6 Ma observed at Site 1242 does not appear to be restricted to the ETP, but rather shows similar timing to a δ15N shift in a site from the Arabian Sea OMZ (Muzuka et al., Proceedings of the ODP, 1991). The new data presented here will help in the development of a mechanistic understanding of relative roles of local and regional processes over global controls on intermediate water OMZ intensity.

Mass-specific respiration of mesozooplankton and its role in the maintenance of an oxygen-deficient ecological barrier (BEDOX) in the upwelling zone off Chile upon presence of a shallow oxygen minimum zone

NASA Astrophysics Data System (ADS)

Donoso, Katty; Escribano, Ruben

2014-01-01

A shallow oxygen minimum zone (OMZ) in the coastal upwelling zone off Chile may vertically confine most zooplankton to a narrow (< 50 m) upper layer. From laboratory experiments, we estimated oxygen consumption of the mesozooplankton community obtained in Bay of Mejillones, northern Chile (23°S) in May 2010, December 2010 and August 2011. Mass-specific respiration rates were in the range of 8.2-24.5 μmol O2 mg dry mass- 1 day- 1, at an average temperature of 12 °C. Estimates of the mesozooplankton biomass in the water column indicated that its aerobic respiration may remove daily a maximum of about 20% of oxygen available at the base of the oxycline. Since previous work indicates that zooplankton aggregate near the base of the oxycline, the impact of aerobic respiration on oxygen content might be even stronger at this depth. Mesozooplankton respiration, along with community respiration by microorganisms near the base of the oxycline and a strongly stratified condition (limiting vertical flux of O2), are suggested as being critical factors causing and maintaining a persistent subsurface oxygen-deficient ecological barrier (BEDOX) in the upwelling zone. This BEDOX layer can have a major role in affecting and regulating zooplankton distribution and their dynamics in the highly productive coastal upwelling zone of the Humboldt Current System.

Abrupt changes of intermediate-water oxygen in the northwestern Pacific during the last 27 kyr

NASA Astrophysics Data System (ADS)

Ishizaki, Yui; Ohkushi, Ken'ichi; Ito, Takashi; Kawahata, Hodaka

2009-04-01

An oxygen minimum zone (OMZ) currently exists at intermediate water depths on the northern Japanese margin in the northwestern Pacific. The OMZ results largely from a combination of high surface-water productivity and poor ventilation of intermediate waters. We investigated the late Quaternary history (last 27 kyr) of the intensity of this OMZ using changes in benthic foraminiferal carbon isotopes and assemblages in a sediment core taken on the continental slope off Shimokita Peninsula, northern Japan, at a water depth of 975 m. The core was located well within the region of the present-day OMZ and high surface-water productivity. The benthic foraminiferal δ13C values, which indicate millennial-scale fluctuations of nutrient contents at the sediment-water interface, were 0.48‰ lower during the last glacial maximum (LGM) than during the late Holocene. These results do not indicate the formation of glacial intermediate waters of subarctic Pacific origin, but rather the large contribution of high-nutrient water masses such as the Antarctic Intermediate Water, implying that the regional circulation pattern during the LGM was similar to that of modern times. Benthic foraminiferal assemblages underwent major changes in response to changes in dissolved oxygen concentrations in ocean floor sediments. The lowest oxygen and highest nutrient conditions, marked by dysoxic taxa and negative values of benthic foraminiferal δ13C, occurred during the Bølling/Allerød (B/A) and Pre-Boreal warming events. Dysoxic conditions in this region during these intervals were possibly caused by high surface-water productivity at times of reduced intermediate-water ventilation in the northwestern Pacific. The benthic assemblages show dysoxic events on approx. 100- to 200-year cycles during the B/A, reflecting centennial-scale productivity changes related to freshwater cycles and surface-water circulation in the North Pacific.

Distribution of dissolved manganese in the Peruvian Upwelling and Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Vedamati, Jagruti; Chan, Catherine; Moffett, James W.

2015-05-01

The geochemistry of manganese (Mn) in seawater is dominated by its redox chemistry, as Mn(II) is soluble and Mn(IV) forms insoluble oxides, and redox transformations are mediated by a variety of processes in the oceans. Dissolved Mn (DMn) accumulates under reducing conditions and is depleted under oxidizing conditions. Thus the Peruvian upwelling region, characterized by highly reducing conditions over a broad continental shelf and a major oxygen minimum zone extending far offshore, is potentially a large source of Mn to the eastern Tropical South Pacific. In this study, DMn was determined on cruises in October 2005 and February 2010 in the Peruvian Upwelling and Oxygen Minimum Zone, to evaluate the relationship between Mn, oxygen and nitrogen cycle processes. DMn concentrations were determined using simple dilution and matrix-matched external standardization inductively coupled mass spectrometry. Surprisingly, DMn was depleted under the most reducing conditions along the Peruvian shelf. Concentrations of dissolved Mn in surface waters increased offshore, indicating that advection of Mn offshore from the Peruvian shelf is a minor source. Subsurface Mn maxima were observed within the oxycline rather than within the oxygen minimum zone (OMZ), indicating they arise from remineralization of organic matter rather than reduction of Mn oxides. The distribution of DMn appears to be dominated by non-redox processes and inputs from the atmosphere and from other regions associated with specific water masses. Lower than expected DMn concentrations on the shelf probably reflect limited fluvial inputs from the continent and efficient offshore transport. This behavior is in stark contrast to Fe, reported in a companion study which is very high on the shelf and undergoes dynamic redox cycling.

First evidence of denitrification vis-à-vis monsoon in the Arabian Sea since Late Miocene.

PubMed

Tripathi, Shubham; Tiwari, Manish; Lee, Jongmin; Khim, Boo-Keun

2017-02-21

In the Arabian Sea, South Asian monsoon (SAM)-induced high surface water productivity coupled with poor ventilation of intermediate water results in strong denitrification within the oxygen minimum zone (OMZ). Despite the significance of denitrification in the Arabian Sea, we have no long-term record of its evolution spanning the past several million years. Here, we present the first record of denitrification evolution since Late Miocene (~10.2 Ma) in the Eastern Arabian Sea, where the SAM generates moderate surface water productivity, based on the samples retrieved during the International Ocean Discovery Program (IODP) Expedition 355. We find that (i) the SAM was persistently weaker from ~10.2 to 3.1 Ma; it did not intensify at ~8 Ma in contrast to a few previous studies, (ii) on tectonic timescale, both the SAM and the East Asian Monsoon (EAM) varied synchronously, (iii) the first evidence of denitrification and productivity/SAM intensification was at ~3.2-2.8 Ma that coincided with Mid-Pliocene Warm Period (MPWP), and (iv) the modern strength of the OMZ where denitrification is a permanent feature was attained at ~1.0 Ma.

First evidence of denitrification vis-à-vis monsoon in the Arabian Sea since Late Miocene

NASA Astrophysics Data System (ADS)

Tripathi, Shubham; Tiwari, Manish; Lee, Jongmin; Khim, Boo-Keun; Pandey, Dhananjai K.; Clift, Peter D.; Kulhanek, Denise K.; Andò, Sergio; Bendle, James A. P.; Aharonovich, Sophia; Griffith, Elizabeth M.; Gurumurthy, Gundiga P.; Hahn, Annette; Iwai, Masao; Kumar, Anil; Kumar, A. Ganesh; Liddy, Hannah M.; Lu, Huayu; Lyle, Mitchell W.; Mishra, Ravi; Radhakrishna, Tallavajhala; Routledge, Claire M.; Saraswat, Rajeev; Saxena, Rakesh; Scardia, Giancarlo; Sharma, Girish K.; Singh, Arun D.; Steinke, Stephan; Suzuki, Kenta; Tauxe, Lisa; Xu, Zhaokai; Yu, Zhaojie

2017-02-01

In the Arabian Sea, South Asian monsoon (SAM)-induced high surface water productivity coupled with poor ventilation of intermediate water results in strong denitrification within the oxygen minimum zone (OMZ). Despite the significance of denitrification in the Arabian Sea, we have no long-term record of its evolution spanning the past several million years. Here, we present the first record of denitrification evolution since Late Miocene (~10.2 Ma) in the Eastern Arabian Sea, where the SAM generates moderate surface water productivity, based on the samples retrieved during the International Ocean Discovery Program (IODP) Expedition 355. We find that (i) the SAM was persistently weaker from ~10.2 to 3.1 Ma it did not intensify at ~8 Ma in contrast to a few previous studies, (ii) on tectonic timescale, both the SAM and the East Asian Monsoon (EAM) varied synchronously, (iii) the first evidence of denitrification and productivity/SAM intensification was at ~3.2-2.8 Ma that coincided with Mid-Pliocene Warm Period (MPWP), and (iv) the modern strength of the OMZ where denitrification is a permanent feature was attained at ~1.0 Ma.

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

PubMed Central

Hingamp, Pascal; Grimsley, Nigel; Acinas, Silvia G; Clerissi, Camille; Subirana, Lucie; Poulain, Julie; Ferrera, Isabel; Sarmento, Hugo; Villar, Emilie; Lima-Mendez, Gipsi; Faust, Karoline; Sunagawa, Shinichi; Claverie, Jean-Michel; Moreau, Hervé; Desdevises, Yves; Bork, Peer; Raes, Jeroen; de Vargas, Colomban; Karsenti, Eric; Kandels-Lewis, Stefanie; Jaillon, Olivier; Not, Fabrice; Pesant, Stéphane; Wincker, Patrick; Ogata, Hiroyuki

2013-01-01

Nucleo-cytoplasmic large DNA viruses (NCLDVs) constitute a group of eukaryotic viruses that can have crucial ecological roles in the sea by accelerating the turnover of their unicellular hosts or by causing diseases in animals. To better characterize the diversity, abundance and biogeography of marine NCLDVs, we analyzed 17 metagenomes derived from microbial samples (0.2–1.6 μm size range) collected during the Tara Oceans Expedition. The sample set includes ecosystems under-represented in previous studies, such as the Arabian Sea oxygen minimum zone (OMZ) and Indian Ocean lagoons. By combining computationally derived relative abundance and direct prokaryote cell counts, the abundance of NCLDVs was found to be in the order of 104–105 genomes ml−1 for the samples from the photic zone and 102–103 genomes ml−1 for the OMZ. The Megaviridae and Phycodnaviridae dominated the NCLDV populations in the metagenomes, although most of the reads classified in these families showed large divergence from known viral genomes. Our taxon co-occurrence analysis revealed a potential association between viruses of the Megaviridae family and eukaryotes related to oomycetes. In support of this predicted association, we identified six cases of lateral gene transfer between Megaviridae and oomycetes. Our results suggest that marine NCLDVs probably outnumber eukaryotic organisms in the photic layer (per given water mass) and that metagenomic sequence analyses promise to shed new light on the biodiversity of marine viruses and their interactions with potential hosts. PMID:23575371

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes.

PubMed

Hingamp, Pascal; Grimsley, Nigel; Acinas, Silvia G; Clerissi, Camille; Subirana, Lucie; Poulain, Julie; Ferrera, Isabel; Sarmento, Hugo; Villar, Emilie; Lima-Mendez, Gipsi; Faust, Karoline; Sunagawa, Shinichi; Claverie, Jean-Michel; Moreau, Hervé; Desdevises, Yves; Bork, Peer; Raes, Jeroen; de Vargas, Colomban; Karsenti, Eric; Kandels-Lewis, Stefanie; Jaillon, Olivier; Not, Fabrice; Pesant, Stéphane; Wincker, Patrick; Ogata, Hiroyuki

2013-09-01

Nucleo-cytoplasmic large DNA viruses (NCLDVs) constitute a group of eukaryotic viruses that can have crucial ecological roles in the sea by accelerating the turnover of their unicellular hosts or by causing diseases in animals. To better characterize the diversity, abundance and biogeography of marine NCLDVs, we analyzed 17 metagenomes derived from microbial samples (0.2-1.6 μm size range) collected during the Tara Oceans Expedition. The sample set includes ecosystems under-represented in previous studies, such as the Arabian Sea oxygen minimum zone (OMZ) and Indian Ocean lagoons. By combining computationally derived relative abundance and direct prokaryote cell counts, the abundance of NCLDVs was found to be in the order of 10(4)-10(5) genomes ml(-1) for the samples from the photic zone and 10(2)-10(3) genomes ml(-1) for the OMZ. The Megaviridae and Phycodnaviridae dominated the NCLDV populations in the metagenomes, although most of the reads classified in these families showed large divergence from known viral genomes. Our taxon co-occurrence analysis revealed a potential association between viruses of the Megaviridae family and eukaryotes related to oomycetes. In support of this predicted association, we identified six cases of lateral gene transfer between Megaviridae and oomycetes. Our results suggest that marine NCLDVs probably outnumber eukaryotic organisms in the photic layer (per given water mass) and that metagenomic sequence analyses promise to shed new light on the biodiversity of marine viruses and their interactions with potential hosts.

Climate oscillations reflected in the Arabian Sea subseafloor microbiome

NASA Astrophysics Data System (ADS)

Orsi, William; Coolen, Marco; He, Lijun; Wuchter, Cornelia; Irigoien, Xabier; Chust, Guillem; Johnson, Carl; Hemingway, Jordon; Lee, Mitchell; Galy, Valier; Giosan, Liviu

2016-04-01

Marine sediment contains a vast microbial biosphere that influences global biogeochemical cycles over geological timescales. However, the environmental factors controlling the stratigraphy of subseafloor microbial communities are poorly understood. We studied a sediment core directly underlying the Arabian Sea oxygen minimum zone (OMZ), which exhibits organic carbon rich sapropelic laminae deposited under low oxygen conditions. Consistent with several other cores from the same location, age dating revealed the sapropelic layers coincide with warm North Atlantic millennial-scale Dansgaard-Oeschger events, indicating a direct link between the strength of the OMZ and paleoclimate. A total of 214 samples spanning 13 m and 52 Kyr of deposition were selected for geochemical analyses and paleoclimate proxy measurements, as well as high-throughput metagenomic DNA sequencing of bacteria and archaea. A novel DNA extraction protocol was developed that allowed for direct (unamplified) metagenomic sequencing of DNA from each sample. This dataset represents the highest resolved sedimentary metagenomic sampling profile to date. Analysis of these data together with multiple paleoceanographic proxies show that millennial-scale paleoenvironmental conditions correlate with the metabolism and diversity of bacteria and archaea over the last glacial-interglacial cycle in the Arabian Sea. The metabolic potential for bacterial denitrification correlates with climate-driven OMZ strength and concomitant nitrogen stable isotope fractionation, whereas catabolic potential reflects changing marine organic matter sources across the Last Glacial Maximum. These results indicate that the subsisting microbial communities had been stratified to a large extent by paleoceanographic conditions at the time of deposition. Paleoenvironmental conditions should thus be considered as a mechanism that can help explain microbiome stratigraphy in marine sediment.

Accumulation of Fe oxyhydroxides in the Peruvian oxygen deficient zone implies non-oxygen dependent Fe oxidation

DOE PAGES

Heller, Maija I.; Lam, Phoebe J.; Moffett, James W.; ...

2017-05-19

Oxygen minimum zones (OMZs) have been proposed to be an important source of dissolved iron (Fe) into the interior ocean. However, previous studies in OMZs have shown a sharp decrease in total dissolved Fe (dFe) and/or dissolved Fe(II) (dFe(II)) concentrations at the shelf-break, despite constant temperature, salinity and continued lack of oxygen across the shelf-break. The loss of both total dFe and dFe(II) suggests a conversion of the dFe to particulate form, but studies that have coupled the reduction-oxidation (redox) speciation of both dissolved and particulate phases have not previously been done. Here in this work, we have measured themore » redox speciation and concentrations of both dissolved and particulate forms of Fe in samples collected during the U.S. GEOTRACES Eastern tropical Pacific Zonal Transect (EPZT) cruise in 2013 (GP16). This complete data set allows us to assess possible mechanisms for loss of dFe. We observed an offshore loss of dFe(II) within the oxygen deficient zone (ODZ), where dissolved oxygen is undetectable, accompanied by an increase in total particulate Fe (pFe). Total pFe concentrations were highest in the upper ODZ. X-ray absorption spectroscopy revealed that the pFe maximum was primarily in the Fe(III) form as Fe(III) oxyhydroxides. The remarkable similarity in the distributions of total particulate iron and nitrite suggests a role for nitrite in the oxidation of dFe(II) to pFe(III). Lastly, we present a conceptual model for the rapid redox cycling of Fe that occurs in ODZs, despite the absence of oxygen.« less

Accumulation of Fe oxyhydroxides in the Peruvian oxygen deficient zone implies non-oxygen dependent Fe oxidation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heller, Maija I.; Lam, Phoebe J.; Moffett, James W.

Oxygen minimum zones (OMZs) have been proposed to be an important source of dissolved iron (Fe) into the interior ocean. However, previous studies in OMZs have shown a sharp decrease in total dissolved Fe (dFe) and/or dissolved Fe(II) (dFe(II)) concentrations at the shelf-break, despite constant temperature, salinity and continued lack of oxygen across the shelf-break. The loss of both total dFe and dFe(II) suggests a conversion of the dFe to particulate form, but studies that have coupled the reduction-oxidation (redox) speciation of both dissolved and particulate phases have not previously been done. Here in this work, we have measured themore » redox speciation and concentrations of both dissolved and particulate forms of Fe in samples collected during the U.S. GEOTRACES Eastern tropical Pacific Zonal Transect (EPZT) cruise in 2013 (GP16). This complete data set allows us to assess possible mechanisms for loss of dFe. We observed an offshore loss of dFe(II) within the oxygen deficient zone (ODZ), where dissolved oxygen is undetectable, accompanied by an increase in total particulate Fe (pFe). Total pFe concentrations were highest in the upper ODZ. X-ray absorption spectroscopy revealed that the pFe maximum was primarily in the Fe(III) form as Fe(III) oxyhydroxides. The remarkable similarity in the distributions of total particulate iron and nitrite suggests a role for nitrite in the oxidation of dFe(II) to pFe(III). Lastly, we present a conceptual model for the rapid redox cycling of Fe that occurs in ODZs, despite the absence of oxygen.« less

Accumulation of Fe oxyhydroxides in the Peruvian oxygen deficient zone implies non-oxygen dependent Fe oxidation

NASA Astrophysics Data System (ADS)

Heller, Maija I.; Lam, Phoebe J.; Moffett, James W.; Till, Claire P.; Lee, Jong-Mi; Toner, Brandy M.; Marcus, Matthew A.

2017-08-01

Oxygen minimum zones (OMZs) have been proposed to be an important source of dissolved iron (Fe) into the interior ocean. However, previous studies in OMZs have shown a sharp decrease in total dissolved Fe (dFe) and/or dissolved Fe(II) (dFe(II)) concentrations at the shelf-break, despite constant temperature, salinity and continued lack of oxygen across the shelf-break. The loss of both total dFe and dFe(II) suggests a conversion of the dFe to particulate form, but studies that have coupled the reduction-oxidation (redox) speciation of both dissolved and particulate phases have not previously been done. Here we have measured the redox speciation and concentrations of both dissolved and particulate forms of Fe in samples collected during the U.S. GEOTRACES Eastern tropical Pacific Zonal Transect (EPZT) cruise in 2013 (GP16). This complete data set allows us to assess possible mechanisms for loss of dFe. We observed an offshore loss of dFe(II) within the oxygen deficient zone (ODZ), where dissolved oxygen is undetectable, accompanied by an increase in total particulate Fe (pFe). Total pFe concentrations were highest in the upper ODZ. X-ray absorption spectroscopy revealed that the pFe maximum was primarily in the Fe(III) form as Fe(III) oxyhydroxides. The remarkable similarity in the distributions of total particulate iron and nitrite suggests a role for nitrite in the oxidation of dFe(II) to pFe(III). We present a conceptual model for the rapid redox cycling of Fe that occurs in ODZs, despite the absence of oxygen.

Polychaete community structure in the South Eastern Arabian Sea continental margin (200-1000 m)

NASA Astrophysics Data System (ADS)

Abdul Jaleel, K. U.; Anil Kumar, P. R.; Nousher Khan, K.; Correya, Neil S.; Jacob, Jini; Philip, Rosamma; Sanjeevan, V. N.; Damodaran, R.

2014-11-01

Macrofaunal polychaete communities (>500 μm) in the South Eastern Arabian Sea (SEAS) continental margin (200-1000 m) are described, based on three systematic surveys carried out in 9 transects (at ~200 m, 500 m and 1000 m) between 7°00‧and 14°30‧N latitudes. A total of 7938 polychaetes belonging to 195 species were obtained in 136 grab samples collected at 27 sites. Three distinct assemblages were identified in the northern part of the SEAS margin (10-14°30‧N), occupying the three sampled depth strata (shelf edge, upper and mid-slope) and two assemblages (shelf edge and slope) in the south (7-10°N). Highest density of polychaetes and dominance of a few species were observed in the shelf edge, where the Arabian Sea oxygen minimum zone (OMZ) impinged on the seafloor, particularly in the northern transects. The resident fauna in this region (Cossura coasta, Paraonis gracilis, Prionospio spp. and Tharyx spp.) were characteristically of smaller size, and well suited to thrive in the sandy sediments in OMZ settings. Densities were lowest along the most northerly transect (T9), where dissolved oxygen (DO) concentrations were extremely low (<0.15 ml l-1, i.e.<6.7 μmol l-1). Beyond the realm of influence of the OMZ (i.e. mid-slope, ~1000 m), the faunal density decreased while species diversity increased. The relative proportion of silt increased with depth, and the dominance of the aforementioned species decreased, giving way to forms such as Paraprionospio pinnata, Notomastus sp., Eunoe sp. and lumbrinerids. Relatively high species richness and diversity were observed in the sandy sediments of the southern sector (7-9°N), where influence of the OMZ was less intense. The area was also characterized by certain species (e.g. Aionidella cirrobranchiata, Isolda pulchella) that were nearly absent in the northern region. The gradients in DO concentration across the core and lower boundary of the OMZ, along with bathymetric and latitudinal variation in sediment texture, were responsible for differences in polychaete size and community structure on the SEAS margin. Spatial and temporal variations were observed in organic matter (OM) content of the sediment, but these were not reflected in the density, diversity or distribution pattern of the polychaetes.

Morphological responses of macrobenthic polychaetes to low oxygen on the Oman continental slope, NW Arabian Sea

NASA Astrophysics Data System (ADS)

Lamont, Peter A.; Gage, John D.

2000-01-01

Morphological adaptation to low dissolved oxygen consisting of enlarged respiratory surface area is described in polychaete species belonging to the family Spionidae from the Oman margin where the oxygen minimum zone impinges on the continental slope. Similar adaptation is suggested for species in the family Cossuridae. Such morphological adaptation apparently has not been previously recorded among polychaetes living in hypoxic conditions. The response consists of enlargement in size and branching of the branchiae relative to similar species living in normal levels of dissolved oxygen. Specimens were examined in benthic samples from different depths along a transect through the oxygen minimum zone. There was a highly significant trend shown to increasing respiratory area relative to body size in two undescribed spionid species with decreasing depth and oxygen within the OMZ. Yet the size and number of branchiae are often used as taxonomic characters. These within-species differences in size and number of branchiae may be a direct response by the phenotype to intensity of hypoxia. The alternative explanations are that they either reflect a pattern of differential post-settlement selection among a highly variable genotype, or represent early genetic differentiation among depth-isolated sub-populations.

Impacts of hypoxia on the structure and processes in the pelagic community (zooplankton, macro-invertebrates and fish)

NASA Astrophysics Data System (ADS)

Ekau, W.; Auel, H.; Pörtner, H.-O.; Gilbert, D.

2009-05-01

Dissolved oxygen (DO) concentration in the water column is an environmental parameter that is crucial for the successful development of many pelagic organisms. Hypoxia tolerance and threshold values are species- and stage-specific and can vary enormously. While some fish species may suffer from oxygen values of less than 3 ml L-1 and show impact on growth, development and behaviour, other organisms such as euphausiids may survive DO levels as low as 0.1 ml L-1. A change in the average or the minimum or maximum DO in an area may have significant impacts on the survival of certain species and hence on the species composition in the ecosystem with consequent changes in trophic pathways and productivity. Evidence of the deleterious effects of oxygen depletion on species of the pelagic realm is scarce, particularly in terms of the effect of low oxygen on development, recruitment and patterns of migration and distribution. While planktonic organisms have to cope with different DOs and find adaptive mechanisms, nektonic species may avoid areas of inconvenient DO and develop adapted migrational strategies. Planktonic organisms may only be able to escape vertically, above or beneath the Oxygen Minimum Zone (OMZ). In shallow areas only the surface layer can serve as a refuge, in deep waters many organisms have developed vertical migration strategies to use, pass and cope with the OMZ. This paper elucidates the role of DO for different taxa in the pelagic realm and the consequences of low oxygen for foodweb structure and system productivity.

Indian Monsoon and denitrification change in the Laxmi Basin (IODP Exp. 355 Site U1456) of the Eastern Arabian Sea during the last 800 kyrs

NASA Astrophysics Data System (ADS)

Kim, J. E.; Khim, B. K.; Ikehara, M.; Lee, J.

2017-12-01

The Arabian Sea is a famous site for the basin-wide denitrification in the globe. The Western Arabian Sea has been acknowledged by its upwelling-induced denitrification related to the Indian Monsoon system (Altabet et al., 1999). It was recently reported that the denitrification in the Eastern Arabian Sea (IODP Exp. 355 Site U1456) has been persistent and consistent during the mid-Pleistocene as reflected in the bulk sediment δ15N values (Tripathi et al., 2017). Based on the age model reconstructed by δ18O stratigraphy of planktonic foraminifera (Globigerinoides ruber) together with shipboard biostratigraphic and paleomagnetic data at Site U1456 drilled in the Laxmi Basin of the Eastern Arabian Sea, the glacial-interglacial fluctuations of denitrification in association with the development of oxygen minimum zone (OMZ) were resolved in the context of Indian Monsoon activity. One of striking features in the Eastern Arabian Sea is that the δ15N values of bulk sediment show clear and consistent denitrification with minimum δ15N values exceeding 6‰ even during glacial periods, when its western counterpart experienced a temporal collapse of OMZ and denitrification. The Eastern Arabian Sea is fed not only by the upwelling-induced productivity in the western margin during the summer monsoon but also by the high productivity during the winter monsoon, both of which maintain the increased productivity affecting the OMZ through the consumption of dissolved oxygen by the degradation of sinking organic particles. The Eastern Arabian Sea is further influenced by the clockwise surface currents, intermediate water ventilation change by the blockage of Antarctic Intermediate Water, limited inflow from the Red Sea/Persian Gulf, and the freshwater salinity stratification due to nearby riverine discharges, all of which make the denitrification process more complicated than the Western Arabian Sea. Nonetheless, the glacial-interglacial denitrification change in the Eastern Arabian Sea is interpreted to be linked strongly with the intensity of Indian Monsoon.

(Tele)presenting Secrets from the Deep Southern California Margin

NASA Astrophysics Data System (ADS)

Levin, L. A.; Girguis, P. R.; Brennan, M.; German, C. R.; Raineault, N.; Le, J. T.; Grupe, B.; Gallo, N.; Inderbitzen, K. E.; Tuzun, S.; Wagner, J.

2016-02-01

This past summer scientists, students and the public participated through telepresence in 2 weeks of deep-sea exploration via the EV Nautilus, visiting a tremendous diversity of sites found along the southern California continental margin (200-900m). We observed previously unknown cold seeps; new and unexpected assemblages and species distributions; and novel animal behaviors; all under the overarching influence of strong oxygen gradients from the East Pacific oxygen minimum zone (OMZ). The expedition discovered four new methane seep sites, each with distinct biota reflecting varying depth and oxygen levels. OMZ specialists such as lucinid clams, hagfish, and thornyhead fishes coexisted with seep biota (vesicoymid clams) at a 1.4-km long seep off Point Dume (Malibu, CA), forming a blended ecosystem with distinct zonation. A range of habitats (canyons, knolls, mounds) within the OMZ hosted fish, crustacean, echinoderm and cnidarian species with unusual hypoxia tolerance to < 3 µM O2 or lower. Organic falls (a sunken whale and naturally occurring kelp holdfasts) hosted many invertebrates and served as clear magnets for scavengers and predators. In situ observations revealed unusual behaviors including "parasailing" snails and drifting benthic siphonophores in the Santa Monica Basin, fish aggregating at seep carbonates, and cruising catsharks and their egg cases at methane seeps. Many of these observations advance understanding of the ecosystem services provided by deep-sea, margin habitats, while stimulating public interest in ocean exploration. Telepresence permitted broad engagement of students and scientists from as near as Los Angeles and as far as South Africa, as well as meaningful interactions with the public. In situ exploration and observation can and will play increasingly important roles in environmental management of the deep ocean as disturbance from resource extraction and climate change intensify.

Biogeochemical modelling of dissolved oxygen in a changing ocean.

PubMed

Andrews, Oliver; Buitenhuis, Erik; Le Quéré, Corinne; Suntharalingam, Parvadha

2017-09-13

Secular decreases in dissolved oxygen concentration have been observed within the tropical oxygen minimum zones (OMZs) and at mid- to high latitudes over the last approximately 50 years. Earth system model projections indicate that a reduction in the oxygen inventory of the global ocean, termed ocean deoxygenation, is a likely consequence of on-going anthropogenic warming. Current models are, however, unable to consistently reproduce the observed trends and variability of recent decades, particularly within the established tropical OMZs. Here, we conduct a series of targeted hindcast model simulations using a state-of-the-art global ocean biogeochemistry model in order to explore and review biases in model distributions of oceanic oxygen. We show that the largest magnitude of uncertainty is entrained into ocean oxygen response patterns due to model parametrization of p CO 2 -sensitive C : N ratios in carbon fixation and imposed atmospheric forcing data. Inclusion of a p CO 2 -sensitive C : N ratio drives historical oxygen depletion within the ocean interior due to increased organic carbon export and subsequent remineralization. Atmospheric forcing is shown to influence simulated interannual variability in ocean oxygen, particularly due to differences in imposed variability of wind stress and heat fluxes.This article is part of the themed issue 'Ocean ventilation and deoxygenation in a warming world'. © 2017 The Author(s).

Reversal of Increasing Tropical Ocean Hypoxia Trends With Sustained Climate Warming

NASA Astrophysics Data System (ADS)

Fu, Weiwei; Primeau, Francois; Keith Moore, J.; Lindsay, Keith; Randerson, James T.

2018-04-01

Dissolved oxygen (O2) is essential for the survival of marine animals. Climate change impacts on future oxygen distributions could modify species biogeography, trophic interactions, biodiversity, and biogeochemistry. The Coupled Model Intercomparison Project Phase 5 models predict a decreasing trend in marine O2 over the 21st century. Here we show that this increasing hypoxia trend reverses in the tropics after 2100 in the Community Earth System Model forced by atmospheric CO2 from the Representative Concentration Pathway 8.5 and Extended Concentration Pathway 8.5. In tropical intermediate waters between 200 and 1,000 m, the model predicts a steady decline of O2 and an expansion of oxygen minimum zones (OMZs) during the 21st century. By 2150, however, the trend reverses with oxygen concentration increasing and OMZ volume shrinking through 2300. A novel five-box model approach in conjunction with output from the full Earth system model is used to separate the contributions of biological and physical processes to the trends in tropical oxygen. The tropical O2 recovery is caused mainly by reductions in tropical biological export, coupled with a modest increase in ventilation after 2200. The time-evolving oxygen distribution impacts marine nitrogen cycling, with potentially important climate feedbacks.

Biogeochemical modelling of dissolved oxygen in a changing ocean

NASA Astrophysics Data System (ADS)

Andrews, Oliver; Buitenhuis, Erik; Le Quéré, Corinne; Suntharalingam, Parvadha

2017-08-01

Secular decreases in dissolved oxygen concentration have been observed within the tropical oxygen minimum zones (OMZs) and at mid- to high latitudes over the last approximately 50 years. Earth system model projections indicate that a reduction in the oxygen inventory of the global ocean, termed ocean deoxygenation, is a likely consequence of on-going anthropogenic warming. Current models are, however, unable to consistently reproduce the observed trends and variability of recent decades, particularly within the established tropical OMZs. Here, we conduct a series of targeted hindcast model simulations using a state-of-the-art global ocean biogeochemistry model in order to explore and review biases in model distributions of oceanic oxygen. We show that the largest magnitude of uncertainty is entrained into ocean oxygen response patterns due to model parametrization of pCO2-sensitive C : N ratios in carbon fixation and imposed atmospheric forcing data. Inclusion of a pCO2-sensitive C : N ratio drives historical oxygen depletion within the ocean interior due to increased organic carbon export and subsequent remineralization. Atmospheric forcing is shown to influence simulated interannual variability in ocean oxygen, particularly due to differences in imposed variability of wind stress and heat fluxes. This article is part of the themed issue 'Ocean ventilation and deoxygenation in a warming world'.

Orbital-scale denitrification changes in the Eastern Arabian Sea during the last 800 kyrs.

PubMed

Kim, Ji-Eun; Khim, Boo-Keun; Ikehara, Minoru; Lee, Jongmin

2018-05-04

Denitrification in the Arabian Sea is closely related to the monsoon-induced upwelling and subsequent phytoplankton production in the surface water. The δ 15 N values of bulk sediments collected at Site U1456 of the International Ocean Discovery Program (IODP) Expedition 355 reveal the orbital-scale denitrification history in response to the Indian Monsoon. Age reconstruction based on the correlation of planktonic foraminifera (Globigerinoides ruber) δ 18 O values with the LR04 stack together with the shipboard biostratigraphic and paleomagnetic data assigns the study interval to be 1.2 Ma. Comparison of δ 15 N values during the last 800 kyrs between Site U1456 (Eastern Arabian Sea) and Site 722B (Western Arabian Sea) showed that δ 15 N values were high during interglacial periods, indicating intensified denitrification, while the opposite was observed during glacial periods. Taking 6‰ as the empirical threshold of denitrification, the Eastern Arabian Sea has experienced a persistent oxygen minimum zone (OMZ) to maintain strong denitrification whereas the Western Arabian Sea has undergone OMZ breakdown during some glacial periods. The results of this study also suggests that five principal oceanographic conditions were changed in response to the Indian Monsoon following the interglacial and glacial cycles, which controls the degree of denitrification in the Arabian Sea.

Variability of dissolved oxygen over the last millennium and the 21st century in CESM

NASA Astrophysics Data System (ADS)

Hameau, Angélique; Joos, Fortunat; Mignot, Juliette; Keller, Kathrin

2017-04-01

The earth system models simulate a depletion of the oxygen content in the ocean under global warming conditions (Cocco et al. 2012, Frölicher et al. 2009). The response to external forcing and mechanism underlying this evolution are not completely understood. Physical and biogeochemical processes are involved and tangled up to each other leading to a decrease of the global mean concentration of O2 in the ocean with the increase of the ocean temperature. This result is supported by experimental and observational studies in Atlantic and Pacific oceans (Stramma et al. 2008, Brandt et al. 2010). Here, we study the evolution of dissolved oxygen in a climate simulation of the Community Earth System Model (CESM) covering the last millennium and the 21st century. This long period allows us to identify the natural variability of the climate in this system, and therefore analyse the time of emergence (ToE) of the anthropogenic signal under the RCP8.5 scenario. Based on Keller et al. 2014, the time of emergence is defined as the point in time when the trend signal reaches twice the standard deviation of the signal during the preindustrial period (1000 years). The ToE of oxygen and of temperature present an offset. We show that the anthropogenic emissions are seen in a first hand by the oxygen and only then by the temperature. We also look at the OMZ response. The oxygen minimum zones result from a combination of weak ventilation and sustained respiration by the microorgamisms. With a global decrease of the oceanic oxygen content, the OMZ may therefore expand impacting the environment of marine species. But this statement is questioned by Deutsch et al 2014, who relates the variations of Pacific OMZ to the variations of the tropical Walker circulation. The CESM climate model predicts an expansion of the oxygen low zones and the emergence of new ones over the last century. Magnitude and timescales of these responses will be discussed and compared to natural variability.

The Architecture of A Variscan Collisional Crust, As Revealed By The Iberseis Seismic Reflection Profile In Southwest Iberia

NASA Astrophysics Data System (ADS)

Simancas, F.; Carbonell, R.; Gonzalez-Lodeiro, F.; Perez-Estaun, A.; Ayarza, P.; Juhlin, C.; Azor, A.; Saez, R.; Martinez-Poyatos, D.; Pascual, E.

The recently acquired IBERSEIS Seismic Reflection Profile runs across major do- mains of the Variscan Orogen in SW Iberia. Geological studies indicate that the seis- mically surveyed region has been built up from three terranes, namely the South Por- tuguese Zone (SPZ), the Ossa-Morena Zone (OMZ) and the Central Iberian Zone (CIZ). These terranes became sutured after a complex, mainly transpressive (left- lateral), collisional history in Devonian-Carboniferous time. The deep seismic reflec- tion profile IBERSEIS has successfully imaged the sutures between these terranes as well as the structure of their crust. The following main features emerge from the pre- liminary integration of seismic and geological data: 1) The suture between the SPZ and OMZ terranes, marked by oceanic amphibolites, appears at present as a north- dipping left-lateral thrust merging in a mid-crustal detachment; the continuity of this suture-contact in the lower crust is not well defined in the seismic image. 2) The OMZ/CIZ suture, a shear zone with eclogites, is clearly imaged in the upper crust as a band of reflectivity dipping to the NE which, after a flat geometry in the middle crust, may continue downwards to the Moho as NE-dipping lower crustal reflections. 3) The SPZ upper crust has an imbricate structure merging into a mid-crustal detachment at constant depth in the surveyed profile. 4) The structure of the OMZ upper crust is dominated by large-scale recumbent folds affected by late upright folds, as fore- seen by geology and fully confirmed by the seismic image. 5) A general mid-crustal detachment exists in the whole surveyed area, whose geometry varies from a sharp detachment-level in the SPZ to a pinching and swelling horizontal band of reflectivity -a melting layer?- in the OMZ; in any case, a strong decoupling between upper and lower crust characterizes this transect of the Variscan orogen. 6) The lower crust of the SPZ has an intense seismic fabric, in accordance with the consideration of this ter- rane as an external orogenic domain with discrete shear bands preserved in the whole crust. 7) The lower crust of the OMZ is much less reflective than the lower crust of the SPZ. 8) The Moho is flat all along the surveyed area, which means that crustal 1 roots formed during the collisional processes were eliminated later on, probably in Late Carboniferous-Permian times. Despite the disturbance due to the generation of a post-orogenic flat Moho, the IBERSEIS seismic image seems to be a good snapshot of the Variscan collision, with very minor reworking by alpine processes. 2

Benthic foraminifera from the Arabian Sea oxygen minimum zone: towards a paleo-oxygenation proxy.

NASA Astrophysics Data System (ADS)

Clemence, Caulle; Meryem, Mojtahid; Karoliina, Koho; Andy, Gooday; Gert-Jan, Reichart; Gerhard, Schmiedl; Frans, Jorissen

2014-05-01

Benthic foraminifera from the Arabian Sea oxygen minimum zone: towards a paleo-oxygenation proxy. C. Caulle1, M. Mojtahid1, K. Koho2,3, A. Gooday4, G. J. Reichart2,3, G. Schmiedl5, F. Jorissen1 1UMR CNRS 6112 LPG-BIAF, University of Angers, 2 bd Lavoisier, 49045 Angers Cedex 2Utrecht University, Faculty of Geosciences, Department of Earth Sciences, Budapestlaan 4, 3584 CD Utrecht, The Netherlands 3Royal Netherland Institute for Sea Research (Royal NIOZ), Landsdiep 4, 1797 SZ 't Horntje (Texel) 4Southampton Oceanography Centre, Empress Dock, European Way, Southampton SO14 3ZH, UK 5Department of Geosciences, University of Hamburg, Bundesstraße 55, 20146 Hamburg, Germany The thermohaline circulation oxygenates the deep ocean sediment and therefore enables aerobic life on the sea-floor. In the past, interruption of this deep water formation occurred several times causing hypoxic to anoxic conditions on the sea-floor leading to major ecological turnover. A better understanding of the interaction between climate and bottom water oxygenation is therefore essential in order to predict future oceanic responses. Presently, permanent (stable over decadal timescale) low-oxygen conditions occur naturally at mid-water depths in the northern Indian Ocean (Arabian Sea). Oxygen Minimum Zones (OMZ) are key areas to understand the hypoxic-anoxic events and their impact on the benthic ecosystem. In this context, a good knowledge of the ecology and life cycle adaptations of the benthic foraminiferal assemblages living in these low oxygen areas is essential. A series of multicores were recovered from three transects showing an oxygen gradient across the OMZ: the Murray Ridge, the Oman margin and the Indian margin. The stations located at the same depths showed slightly different oxygen concentrations and large differences in organic matter content. These differences are mainly related to the geographic location in the Arabian Sea. We investigated at these stations live and dead benthic foraminiferal faunas. At each location, faunal diversity seems to be controlled by bottom-water oxygen content; limited diversity corresponding to low oxygen content. Foraminiferal abundances reflect organic matter quantity and quality; higher organic matter quality and quantity are related to higher foraminiferal abundances. When comparing the three study areas, similar foraminiferal species (live and dead) are observed suggesting that benthic foraminifera from the Arabian Sea predominantly respond to bottom-water oxygenation. Based on these observations, we aim to develop a paleo-oxygenation proxy based on live, dead and fossil faunas resulting from both our study and previous studies in the Arabian Sea.

Implications of Deoxygenation and Acidification for Deep Sea Urchins in Southern California

NASA Astrophysics Data System (ADS)

Sato, Kirk Nicholas Suda

Implications of multiple climate drivers for sea urchins were investigated across a spectrum of biological organization ranging from the urchin guild scale, to individual life history traits, to the geochemistry, material properties and porosity of sea urchin calcium carbonate skeletal tests. Using pink fragile sea urchins (Strongylocentrotus fragilis) on the southern California upwelling margin as a model species, links between biological traits and environmental parameters in nature across multiple spatial and temporal scales revealed correlations with dissolved oxygen (DO), pH, and temperature. Temporal trends in sea urchin populations assessed from trawl surveys conducted in southern California over the last 20 years (1994-2013) revealed changes in deep-sea urchin densities and depth distributions that coincide with trends in DO and pH on multidecadal and interdecadal (El Nino Southern Oscillation) time scales. The shallower urchin species ( Lytechinus pictus) decreased in density in the upper 200 m by 80%, and the deeper S. fragilis increased in density by ˜300%, providing the first evidence of habitat compression and expansion in sea urchin populations associated with secular and interdecadal variability in DO and pH. In this context, marketable food quality properties of the roe were compared between S. fragilis and the currently fished California red urchin, Mesocentrotus franciscanus, to assess the feasibility of developing a climate change-tolerant future S. fragilis trap fishery. Although roe color, texture, and resilience were similar between the two species, smaller and softer S. fragilis roe suggest it may only supplement, but not replace M. franciscanus in future fisheries. In comparisons across natural margin depth and climate gradients from 100-1100 m, S. fragilis exhibited reduced gonad production, smaller, weaker and more porous calcified tests in the Oxygen Minimum Zone (DO < 22 mumol kg-1) and pH Minimum Zone (in situ pHTotal <7.57) than those collected from less acidic and more oxygenated shelf and oxygen limiting zones above and the lower OMZ below. Thus S. fragilis may be more vulnerable to crushing predators if low oxygen, low pH OMZs continue to shoal and intensify in the future. This research highlights the utility of quantifying natural variability in species' traits along natural gradients on upwelling margins to improve understanding about potential impacts of changing climate drivers.

Early benthic successional processes at implanted substrates in Barkley Submarine Canyon affected by a permanent oxygen minimum zone

NASA Astrophysics Data System (ADS)

Cabrera De Leo, F.; Smith, C. R.; Levin, L. A.; Fleury, A.; Aguzzi, J.

2016-02-01

With the advent of cabled observatories scientists are now able to have a permanent presence in the deep-seafloor, being able to reveal previously unseen faunal behavior as well as to track long-term changes in biodiversity and ecosystem function. The Ocean Networks Canada 800-km loop seafloor observatory array (NEPTUNE) located in the NE Pacific has instruments measuring a variety of environmental variables ranging from temperature, salinity, oxygen, currents, turbidity, fluorescence, etc, at multiple and very high temporal resolution scales. High-definition video cameras also monitor benthic communities in multiple deep-sea habitats, all at some extent influenced by an oxygen minimum zone (OMZ). In the present study, whale-bone and wood substrates are being used to evaluate bathymetric, regional and inter-basin variations in benthic biodiversity and connectivity, as well as interactions between biodiversity and ecosystem function. In May of 2014 three humpback whale (Megaptera novaeangliae) rib sections, one 20x20x10 cm block of Douglas Fir (Pseudotsunga meniziesii), and a 30x30x30 block of authigenic carbonate were placed with the use of an ROV at 890 m depth inside Barkley Canyon. The substrate packages were placed concentrically, 45-cm away from a HD video camera. Five-minute videos were captured at 2-hr intervals. Preliminary data analysis from 8 months of deployment showed very distinct early community succession patterns between the two organic substrates (bones and wood) and the authigenic carbonate. Whalebones and wood showed amphipod (Orchomene obtusa) abundance peaks mostly contained during the first 60 days after deployment; Amphipod peak abundance rapid decline coincides with rapid growth of bacterial mat on whalebone and wood surfaces. Low abundance, species richness and substrate degradation rates are in agreement with a low oxygen environment of the OMZ in the canyon. Despite the early stages of data analysis, this experiment demonstrates how cabled observatories are suited for conducting experiments in the deep-sea, where researchers gain full control of observation parameters and benefit from high-frequency measuring of environmental fluctuation.

Uptake of algal carbon and the synthesis of an "essential" fatty acid by Uvigerina ex. gr. semiornata (Foraminifera) within the Pakistan margin oxygen minimum zone: evidence from fatty acid biomarker and 13C tracer experiments

NASA Astrophysics Data System (ADS)

Larkin, K. E.; Gooday, A. J.; Woulds, C.; Jeffreys, R.; Schwartz, M.; Cowie, G.; Whitcraft, C.; Levin, L.; Dick, J. R.; Pond, D. W.

2014-01-01

Foraminifera are an important component of benthic communities in oxygen depleted settings, where they potentially play a~significant role in the processing of organic matter. We tracked the uptake of a 13C-labeled algal food source into individual fatty acids in the benthic foraminiferal species, Uvigerina ex. gr. semiornata, from the Arabian Sea oxygen minimum zone (OMZ). The tracer experiments were conducted on the Pakistan Margin during the late/post monsoon period (August-October 2003). A monoculture of the diatom Thalassiosira weisflogii was 13C-labeled and used to simulate a pulse of phytoplankton in two complementary experiments. A lander system was used for in situ incubations at 140 m and for 2.5 days duration, whilst a laboratory incubation used an oxystat system to maintain ambient dissolved oxygen concentrations. These shipboard experiments were terminated after 5 days. Uptake of diatoms was rapid, with high incorporation of diatom fatty acids into foraminifera after ~2 days in both experiments. Ingestion of the diatom food source was indicated by the increase over time in the quantity of diatom biomarker fatty acids in the foraminifera and by the high percentage of 13C in many of the fatty acids present at the endpoint of both in~situ and laboratory-based experiments. These results indicate that U. ex. gr. semiornata rapidly ingested the diatom food source and that this foraminifera will play an important role in the short-term cycling of organic matter within this OMZ environment. The experiments also suggested that U. ex. gr. semiornata consumed non-labeled bacterial food items, particularly bacteria, and synthesised the polyunsaturated fatty acid 20:4(n-6) de novo. 20:4(n-6) is often abundant in benthic fauna yet its origins and function have remained unclear. This study demonstrates that U. ex. gr. semiornata is capable of de novo synthesis of this "essential fatty acid" and is potentially a major source of this dietary nutrient in benthic food webs.

Megafaunal responses to strong oxygen gradients on the Pakistan margin of the Arabian Sea

NASA Astrophysics Data System (ADS)

Murty, Sarah J.; Bett, Brian J.; Gooday, Andrew J.

2009-03-01

The Arabian Sea oxygen minimum zone (OMZ), which intersects the continental margin between approximately 100 and 1200 m, is one of the world's largest deep-water oxygen-deficient water masses. We analysed megafaunal organisms seen in images obtained using a wide-angle survey photographic (WASP) system at nine sites (140-1850 m water depth) across the OMZ on the Pakistan Margin during the late-monsoon period (August-September 2003). The visible megafauna comprised: (1) the megabenthos sensu strictu ( s.s.), (2) large polychaetes and (3) the benthopelagic megafauna (fish, natant decapods and octopods). Large protozoans, mainly the foraminiferan Pelosina sp., were counted but not included in the megafauna. The megabenthos s.s. were rare at the seasonally hypoxic 140-m site (O 2=0.11 ml l -1), entirely absent in the OMZ core and most of the lower transition zone (300-900 m; O 2=0.12-0.15 ml l -1), but peaked in abundance (27.94 indiv. m -2) at 1000 m (O 2=0.16 ml l -1). Densities were much lower at 1100 and 1200 m (0.52-0.69 indiv. m -2; O 2=0.25-0.38 ml l -1), and declined to minimal values (0.01 indiv. m -2) at 1850 m (O 2=1.68 ml l -1). There was no correlation with depth, dissolved-oxygen concentration or sediment organic chemistry variables (%C org, %Total N, C:N, δ13C, δ15N). Pelosina sp. was the only strictly benthic organism visible at 400 and 700 m. Fish and natant decapods were fairly common at 300 m, and fish were the only metazoans seen in photographs from 700 m. Large polychaetes, almost certainly Linopherus sp., were very abundant in photographs from 900 m, where megabenthos s.s. were absent, and somewhat less abundant at 1000 m. Suspension-feeding cnidarians and tunicates were abundant at 1100 and 1200 m, respectively. The number of megabenthos s.s. species visible at each site ranged from six (1000 and 1850 m) to 11 (1100 and 1200 m). Diversity ( H'(log e)) was the lowest at 1000 and 1850 m and the highest at 1100 m, with intermediate values at 140 and 1200 m. Dominance was the highest (>99%) at 1000 m, high (87%) at 1200 m and lower (32-50%) at 140, 1100 and 1850 m. Benthopelagic megafauna appeared more tolerant of dysoxia than the megabenthos s.s., although densities peaked at 1100 m, slightly deeper than for the megabenthos s.s.. The presence of uneaten carrion (dead fish and natant decapods) between 300 and 900 m suggests that scavengers were either not active or not present within the OMZ. The megabenthos s.s. appeared to respond to oxygen concentrations above a threshold value (˜0.15-0.16 ml l -1). The ophiuroid-dominated abundance peak at 1000 m, and the abrupt changes in megabenthic assemblage composition between 1000 and 1200 m, were probably expressions of an 'edge effect', known from other OMZs and believed to reflect a threshold release from physiological oxygen limitation accompanied by an abundant food supply.

Evidence for an evolving oxygen minimum zone in the Eastern Mediterranean during sapropel S1 controlled partly by the increased outflow from the Nile flood

NASA Astrophysics Data System (ADS)

Zirks, Eleen; Goodman-Tchernov, Beverly; Krom, Michael D.

2017-04-01

Understanding the nature and evolution of past Oxygen Minimum Zones (OMZ) are of great interest since they shed light on expanding OMZ's in the modern ocean. Furthermore, as we alter the nutrient fluxes emitted from modern major rivers there are known to major, often undesirable, consequence to the oxygen status in the marine basin both proximal and distal to the river discharge (e.g. Mississippi). Recent Global Climate Model (GCM) of the nature and development of S-1 sapropel in the Eastern Mediterranean (EMS) have suggested a four layer system with a well-ventilated surface water (0-200 m) and intermediate water (200-500 m), a partially ventilated sapropel intermediate water (SIW, 500-1800 m) and long-term stagnant deep water below 1800 m. Our conceptual model is of the partially ventilated SIW flowing from Adriatic/Aegean towards the east and becoming depleted in oxygen as it is increasingly influenced by descending labile organic matter derived directly or indirectly from the Nile flood. Most studies of sapropels in the EMS concentrate on the deep water below 1800 m water depths with only a limited number of samples having been taken from the SIW layer. In this review, we focus on the several stations sampled between 500-1800 m and particularly on stations in the Eastern Aegean and Levantine basins. Data has been obtained from sediment cores (9509, 9501, SL112, PS009PC, SL123, 562MC) in which either benthic foraminifera fauna or redox sensitive trace metals (RSTM) data have been measured. The Shannon-Weaver diversity index and the Oxygen Index have been calculated on the benthic foraminifera fauna. These cores reveal a distinct pattern in onset and offset of sapropel S1 and in the interruption of the sapropel at 8.2 ka BP. The onset of S1 was earlier in the shallower water depths consistent with greater respiration rates from progressively less labile organic matter dropping from the photic zone. There was a clear spatial trend in intensity of the OMZ with benthic foraminifera surviving in SIW throughout S1 offshore Libya (562MC) and close to Crete (SL123) nearer the source of SIW. By contrast the diversity is reduced and in case of 562MC the Oxygen Index reached zero close to the Israeli coast and under the direct influence of the Nile. There was an observed correlation between the V/Al ratio (PS009PC), a redox sensitive trace metal used as an indicator for sub-oxic conditions in the water column and the calculated Oxygen Index as well as diversity on benthic foraminifera (SL112). Our study also shows that the intensity of S1 sapropel was greater in this region between its onset and the 8.2 interruption, than in the period from 8.2 to the end of S1. Indeed, close to Cyprus (9501) sapropel S1 ends at 8.2 ka BP and doesn't have a second sapropelic part.

Basin Scale Variation on the Composition and Diversity of Archaea in the Pacific Ocean.

PubMed

Xia, Xiaomin; Guo, Wang; Liu, Hongbin

2017-01-01

The Archaea are a widely distributed group of prokaryotes that inhabit and thrive in many different environments. In the sea, they play key roles in various global biogeochemical processes. Here, in order to investigate the vertical profiles of archaeal community across a large geographic distance, the compositions of archaeal communities in seven seawater columns in the Pacific Ocean were investigated using high throughput 454 pyrosequencing of the 16S rRNA gene. The surface archaeal communities showed lower diversity and greater variability than those in the deeper layers. Two of the major archaeal phyla that displayed different depth preferences were Thaumarchaeota and Euryarchaeota. The majority of Thaumarchaeota belonged to Marine Group I (MGI), which had high relative abundance in deep water. In contrast, Euryarchaeota, which mainly consisted of Marine Group II (MGII) and III (MGIII), were dominant in the surface layer. Compared with MGI and MGII, MGIII were less abundant in seawater and generally absent from the surface water of the subarctic Pacific. In addition, niche separation in the MGI, MGII, and MGIII subgroups was also observed. For example, MGI.C and MGII.A (the major subgroups of MGI and MGII, respectively) displayed a strong negative correlation with each other. The highest level of archaeal diversity was found in the core of an oxygen minimum zone (OMZ) located off Costa Rica, which resulted from the co-occurrence of both anaerobic and aerobic archaea. For example, methanotrophic archaea ANME-2, methanogenic archaea and several sediment origin archaea, such as Marine Benthic Group A (MBGA) and Bathyarchaeota, were all detected at relatively high abundance in the OMZ. Together, our findings indicate that vertical heterogeneities along water columns and latitudinal differentiation in the surface waters are ubiquitous features of archaeal communities in the Pacific Ocean, and the OMZ off Costa Rica is an archaeal biodiversity hot-spot.

Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean.

PubMed

Allers, Elke; Wright, Jody J; Konwar, Kishori M; Howes, Charles G; Beneze, Erica; Hallam, Steven J; Sullivan, Matthew B

2013-02-01

Marine Group A (MGA) is a candidate phylum of Bacteria that is ubiquitous and abundant in the ocean. Despite being prevalent, the structural and functional properties of MGA populations remain poorly constrained. Here, we quantified MGA diversity and population structure in relation to nutrients and O(2) concentrations in the oxygen minimum zone (OMZ) of the Northeast subarctic Pacific Ocean using a combination of catalyzed reporter deposition fluorescence in situ hybridization (CARD-FISH) and 16S small subunit ribosomal RNA (16S rRNA) gene sequencing (clone libraries and 454-pyrotags). Estimates of MGA abundance as a proportion of total bacteria were similar across all three methods although estimates based on CARD-FISH were consistently lower in the OMZ (5.6%±1.9%) than estimates based on 16S rRNA gene clone libraries (11.0%±3.9%) or pyrotags (9.9%±1.8%). Five previously defined MGA subgroups were recovered in 16S rRNA gene clone libraries and five novel subgroups were defined (HF770D10, P262000D03, P41300E03, P262000N21 and A714018). Rarefaction analysis of pyrotag data indicated that the ultimate richness of MGA was very nearly sampled. Spearman's rank analysis of MGA abundances by CARD-FISH and O(2) concentrations resulted in significant correlation. Analyzed in more detail by 16S rRNA pyrotag sequencing, MGA operational taxonomic units affiliated with subgroups Arctic95A-2 and A714018 comprised 0.3-2.4% of total bacterial sequences and displayed strong correlations with decreasing O(2) concentration. This study is the first comprehensive description of MGA diversity using complementary techniques. These results provide a phylogenetic framework for interpreting future studies on ecotype selection among MGA subgroups, and suggest a potentially important role for MGA in the ecology and biogeochemistry of OMZs.

Vertical and lateral flux on the continental slope off Pakistan: correlation of sediment core and trap results

NASA Astrophysics Data System (ADS)

Schulz, H.; von Rad, U.

2014-06-01

Due to the lack of bioturbation, the varve-laminated muds from the oxygen minimum zone (OMZ) off Pakistan provide a unique opportunity to precisely determine the vertical and lateral sediment fluxes in the nearshore part of the northeastern Arabian Sea. West of Karachi (Hab area), the results of two sediment trap stations (EPT and WPT) were correlated with 16 short sediment cores on a depth transect crossing the OMZ. The top of a distinct, either reddish- or light-gray silt layer, 210Pb-dated as AD 1905 ± 10, was used as an isochronous stratigraphic marker bed to calculate sediment accumulation rates. In one core, the red and gray layer were separated by a few (5-10) thin laminae. According to our varve model, this contributes < 10 years to the dating uncertainty, assuming that the different layers are almost synchronous. We directly compared the accumulation rates with the flux rates from the sediment traps that collected the settling material within the water column above. All traps on the steep Makran continental slope show exceptionally high, pulsed winter fluxes of up to 5000 mg m-2 d-1. Based on core results, the flux at the seafloor amounts to 4000 mg m-2 d-1 and agrees remarkably well with the bulk winter flux of material, as well as with the flux of the individual bulk components of organic carbon, calcium carbonate and opal. However, due to the extreme mass of remobilized matter, the high winter flux events exceeded the capacity of the shallow traps. Based on our comparisons, we argue that high-flux events must occur regularly during winter within the upper OMZ off Pakistan to explain the high accumulations rates. These show distribution patterns that are a negative function of water depth and distance from the shelf. Some of the sediment fractions show marked shifts in accumulation rates near the lower boundary of the OMZ. For instance, the flux of benthic foraminifera is lowered but stable below ~1200-1300 m. However, flux and sedimentation in the upper eastern Makran area are dominated by the large amount of laterally advected fine-grained material and by the pulsed nature of the resuspension events at the upper margin during winter.

Uptake of phytodetritus by benthic foraminifera under oxygen depletion at the Indian margin (Arabian Sea)

NASA Astrophysics Data System (ADS)

Enge, A. J.; Witte, U.; Kucera, M.; Heinz, P.

2014-04-01

Benthic foraminifera in sediments on the Indian margin of the Arabian Sea, where the oxygen minimum zone (OMZ) impinges on the continental slope, are exposed to particularly severe levels of oxygen depletion. Food supply for the benthic community is high but delivered in distinct pulses during upwelling and water mixing events associated with summer and winter monsoon periods. In order to investigate the response by benthic foraminifera to such pulsed food delivery under oxygen concentrations of less than 0.1 mL L-1 (4.5 μmol L-1), an in situ isotope labeling experiment (13C, 15N) was performed on the western continental slope of India at 540 m water depth (OMZ core region). The assemblage of living foraminifera (>125 μm) in the uppermost centimeter at this depth is characterized by an unexpectedly high population density of 3982 individuals 10 cm-2 and a strong dominance by few calcareous species. For the experiment, we concentrated on the nine most abundant taxa, which constitute 93% of the entire foraminiferal population at 0-1 cm sediment depth. Increased concentrations of 13C and 15N in the cytoplasm indicate that all investigated taxa took up labeled phytodetritus during the 4 day experimental phase. In total, these nine species had assimilated 113.8 mg C m-2 (17.5% of the total added carbon). Uptake of nitrogen by the three most abundant taxa (Bolivina aff. B. dilatata, Cassidulina sp., Bulimina gibba) was 2.7 mg N m-2 (2% of the total added nitrogen). The response to the offered phytodetritus varied largely among foraminiferal species with Uvigerina schwageri being by far the most important species in short-term processing, whereas the most abundant taxa Bolivina aff. B. dilatata and Cassidulina sp. showed comparably low uptake of the offered food. We suggest the observed species-specific differences are related to species biomass and specific feeding preferences. In summary, the experiment in the OMZ core region shows rapid processing of fresh phytodetritus by foraminifera under almost anoxic conditions. The uptake of large amounts of organic matter by few species within four days suggests that foraminifera may play an important role in short-term carbon cycling in the OMZ core region on the Indian margin.

Contrasting Responses of the Humboldt Current Ecosystem between the Holocene and MIS5e Interglacials Revealed from Multiple Sediment Records

NASA Astrophysics Data System (ADS)

Salvatteci, R.; Schneider, R. R.; Blanz, T.; Martinez, P.; Crosta, X.

2016-12-01

The Humboldt Current Ecosystem (HCE) off Peru yields about 10% of the global fish catch, producing more fish per unit area than any other region in the world. The high productivity is maintained by the upwelling of cold, nutrient-rich water from the oxygen minimum zone (OMZ), driven by strong trade winds. However, the potential impacts of climate change on upwelling dynamics and oceanographic conditions in the near future are uncertain, threatening local and global economies. Here, we unravel the response of the HCE to contrasting climatic conditions during the last two interglacials (i.e. Holocene and MIS5e) providing an independent insight about the relation between climatic factors and upwelling and productivity dynamics. For this purpose, we used multiple cores to reconstruct past changes in OMZ and upwelling intensity, productivity and fish biomass variability. Chronologies for the Holocene were obtained by multiple 14C ages and laminae correlations among cores, while for the MIS5e they were mainly done by correlation of prominent features in several proxies with other published records. We used a multiproxy approach including alkenones to reconstruct sea surface temperatures, δ15N as a proxy for water column denitrification, redox sensitive metals as proxies for sediment redox conditions, and diatom and fish debris assemblages to reconstruct ecological changes. The results show a very different response of the HCE to climate conditions during the last 2 interglacials, likely driven by changes in Tropical Pacific dynamics. During the Holocene we find that 1) the Late Holocene exhibits higher multi-centennial scale variability compared to the Early Holocene, 2) increased upwelling and a weak OMZ during the mid-Holocene, and 3) long term increase in productivity (diatoms and fishes) from the Early to the Late Holocene. During the MIS5e we find an 1) intense OMZ, 2) strong water column stratification, 3) high siliceous biomass, and 4) low fish biomass compared to the Holocene and a regime shift towards more hemipelagic fishes. Our paleoreconstructions during the globally warm MIS5e are consistent with models indicating that the expected increase in stratification and atmospheric CO2 concentrations may significantly reduce fish capacity in the HCE with heavy ecological and economic consequences.

Anoxygenic photosynthesis modulated Proterozoic oxygen and sustained Earth's middle age

PubMed Central

Johnston, D. T.; Wolfe-Simon, F.; Pearson, A.; Knoll, A. H.

2009-01-01

Molecular oxygen (O2) began to accumulate in the atmosphere and surface ocean ca. 2,400 million years ago (Ma), but the persistent oxygenation of water masses throughout the oceans developed much later, perhaps beginning as recently as 580–550 Ma. For much of the intervening interval, moderately oxic surface waters lay above an oxygen minimum zone (OMZ) that tended toward euxinia (anoxic and sulfidic). Here we illustrate how contributions to primary production by anoxygenic photoautotrophs (including physiologically versatile cyanobacteria) influenced biogeochemical cycling during Earth's middle age, helping to perpetuate our planet's intermediate redox state by tempering O2 production. Specifically, the ability to generate organic matter (OM) using sulfide as an electron donor enabled a positive biogeochemical feedback that sustained euxinia in the OMZ. On a geologic time scale, pyrite precipitation and burial governed a second feedback that moderated sulfide availability and water column oxygenation. Thus, we argue that the proportional contribution of anoxygenic photosynthesis to overall primary production would have influenced oceanic redox and the Proterozoic O2 budget. Later Neoproterozoic collapse of widespread euxinia and a concomitant return to ferruginous (anoxic and Fe2+ rich) subsurface waters set in motion Earth's transition from its prokaryote-dominated middle age, removing a physiological barrier to eukaryotic diversification (sulfide) and establishing, for the first time in Earth's history, complete dominance of oxygenic photosynthesis in the oceans. This paved the way for the further oxygenation of the oceans and atmosphere and, ultimately, the evolution of complex multicellular organisms. PMID:19805080

Anoxygenic photosynthesis modulated Proterozoic oxygen and sustained Earth's middle age.

PubMed

Johnston, D T; Wolfe-Simon, F; Pearson, A; Knoll, A H

2009-10-06

Molecular oxygen (O(2)) began to accumulate in the atmosphere and surface ocean ca. 2,400 million years ago (Ma), but the persistent oxygenation of water masses throughout the oceans developed much later, perhaps beginning as recently as 580-550 Ma. For much of the intervening interval, moderately oxic surface waters lay above an oxygen minimum zone (OMZ) that tended toward euxinia (anoxic and sulfidic). Here we illustrate how contributions to primary production by anoxygenic photoautotrophs (including physiologically versatile cyanobacteria) influenced biogeochemical cycling during Earth's middle age, helping to perpetuate our planet's intermediate redox state by tempering O(2) production. Specifically, the ability to generate organic matter (OM) using sulfide as an electron donor enabled a positive biogeochemical feedback that sustained euxinia in the OMZ. On a geologic time scale, pyrite precipitation and burial governed a second feedback that moderated sulfide availability and water column oxygenation. Thus, we argue that the proportional contribution of anoxygenic photosynthesis to overall primary production would have influenced oceanic redox and the Proterozoic O(2) budget. Later Neoproterozoic collapse of widespread euxinia and a concomitant return to ferruginous (anoxic and Fe(2+) rich) subsurface waters set in motion Earth's transition from its prokaryote-dominated middle age, removing a physiological barrier to eukaryotic diversification (sulfide) and establishing, for the first time in Earth's history, complete dominance of oxygenic photosynthesis in the oceans. This paved the way for the further oxygenation of the oceans and atmosphere and, ultimately, the evolution of complex multicellular organisms.

Uptake of algal carbon and the likely synthesis of an "essential" fatty acid by Uvigerina ex. gr. semiornata (Foraminifera) within the Pakistan margin oxygen minimum zone: evidence from fatty acid biomarker and 13C tracer experiments

NASA Astrophysics Data System (ADS)

Larkin, K. E.; Gooday, A. J.; Woulds, C.; Jeffreys, R. M.; Schwartz, M.; Cowie, G.; Whitcraft, C.; Levin, L.; Dick, J. R.; Pond, D. W.

2014-07-01

Foraminifera are an important component of benthic communities in oxygen-depleted settings, where they potentially play a significant role in the processing of organic matter. We tracked the uptake of a 13C-labelled algal food source into individual fatty acids in the benthic foraminiferal species Uvigerina ex. gr. semiornata from the Arabian Sea oxygen minimum zone (OMZ). The tracer experiments were conducted on the Pakistan margin during the late/post monsoon period (August-October 2003). A monoculture of the diatom Thalassiosira weisflogii was 13C-labelled and used to simulate a pulse of phytoplankton in two complementary experiments. A lander system was used for in situ incubations at 140 m water depth and for 2.5 days in duration. Shipboard laboratory incubations of cores collected at 140 m incorporated an oxystat system to maintain ambient dissolved oxygen concentrations and were terminated after 5 days. Uptake of diatoms was rapid, with a high incorporation of diatom fatty acids into foraminifera after ~ 2 days in both experiments. Ingestion of the diatom food source was indicated by the increase over time in the quantity of diatom biomarker fatty acids in the foraminifera and by the high percentage of 13C in many of the fatty acids present at the endpoint of both in situ and laboratory-based experiments. These results indicate that

Ocean N2O Emissions : Recent Global Estimates and Anthropogenically Influenced Changes

NASA Astrophysics Data System (ADS)

Suntharalingam, P.; Buithenuis, E.; Andrews, O.; Le Quere, C.

2016-12-01

Oceanic N2O is produced by microbial activity during organic matter cycling in the subsurface ocean; its production mechanisms display sensitivity to ambient oxygen level. In the oxic ocean, N2O is produced as a byproduct during the oxidation of ammonia to nitrate, mediated by ammonia oxidizing bacteria and archea. N2O is also produced and consumed in sub-oxic and anoxic waters through the action of marine denitrifiers during the multi-step reduction of nitrate to gaseous nitrogen. The oceanic N2O distribution therefore displays significant heterogeneity with background levels of 10-20 nmol/l in the well-oxygenated ocean basins, high concentrations (> 40 nmol/l) in hypoxic waters, and N2O depletion in the core of ocean oxygen minimum zones (OMZs). Oceanic N2O emissions are estimated to account for up to a third of the pre-industrial N2O fluxes to the atmosphere, however the natural cycle of ocean N2O has been perturbed in recent decades by inputs of anthropogenically derived nutrient, and by the impacts of climate change. Anthropogenic nitrogen inputs (e.g., NOx and NHy from fossil fuel combustion and agricultural fertilizer) enter the ocean via atmospheric deposition and riverine fluxes, influencing oceanic N2O production via their impact on the marine organic matter cycle. In addition, climate variations associated with surface ocean warming affect oceanic circulation and nutrient transport pathways, influencing marine productivity and the ventilation of oxygen minimum zones. Recent studies have suggested that possible expansion of oceanic OMZs in a warming climate could lead to significant changes in N2O production and fluxes from these regions. We will summarise the current state of knowledge on the ocean N2O budget and net flux to the atmosphere. Recently reported estimates have been based on (i) empirical relationships derived from ocean tracer data (e.g., involving excess N2O and Apparent Oxygen Utilization (AOU) correlations), (ii) ocean biogeochemical models, and (iii) air-sea flux calculations which combine surface ocean N2O measurements with gas-exchange relationships. We will also present results from ongoing ocean biogeochemistry model analyses evaluating the separate influences of climate variation and anthropogenic nutrient inputs on ocean N2O emissions for recent decades.

On the effects of ENSO on ocean biogeochemistry in the Northern Humboldt Current System (NHCS): A modeling study

NASA Astrophysics Data System (ADS)

Mogollón, Rodrigo; Calil, Paulo H. R.

2017-08-01

The response of the ocean biogeochemistry to intense El Niño Southern Oscillation (ENSO) events in the Northern Humboldt Current System (NHCS) is assessed with an eddy-resolving coupled physical-biogeochemical model. El Niño (EN) 1997-1998 and La Niña (LN) 1999-2000 are well reproduced, inducing large spatial and temporal variability of biogeochemical properties at three coastal upwelling centers along the Peruvian coast (Chimbote 9.4°S, Callao 12.1°S, and Pisco 14°S). During EN, the upper limit of the Oxygen Minimum Zone (OMZ) experiences an offshore displacement of, approximately, 60 km and a deepening of, approximately, 150 m when compared to neutral-ENSO conditions, thus ventilating the upper 100 m of the water column. In contrast, during LN, the OMZ tongue outcrops over the continental shelf deoxygenating the water column at all locations. During LN, at the southernmost location, enhanced Eddy Kinetic Energy (EKE) induces a leaking of the coastal nutrient inventory by horizontally advecting nitrogen from the nearshore region into the oligotrophic ocean. This leads to a reduction of biological production in the coastal zone. During EN, nitrification is an order of magnitude larger than denitrification in supplying the nitrite coastal pool. During LN peak, nitrification is reduced by 80%, while denitrification becomes equally important, evidencing a coupling between these two oxygen-dependent processes. The nitrogen removal due to suboxic activity is mostly controlled by the Anaerobic Ammonium Oxidation (Anammox) in the southern domain during neutral-ENSO conditions. Our results show that during EN, denitrification contributes with 60% of the total nitrogen removal. In contrast, Anammox contributes with 70% during LN. The outgassing of nitrous oxide (N2O), an intermediate product of denitrification, is reduced and enhanced during EN and LN, respectively, and it is strongly modulated by the spatiotemporal variability of oxygen in the environment.

Evaluating the effect of oceanic striations on biogeochemistry in the eastern South Pacific

NASA Astrophysics Data System (ADS)

Auger, P. A.; Belmadani, A.; Donoso, D.; Hormazabal, S.

2017-12-01

In recent years, quasi-zonal mesoscale jet-like features or striations have been ubiquitously detected in the time-mean circulation of the world ocean using satellite altimetry and in situ data. Most likely the result of some organization of the mesoscale eddy field such as preferred eddy tracks, these striations may be able to advect and mix physical properties. Yet, their impact on biogeochemistry has not been assessed yet. Off central Chile, the interaction between striations and sharp background gradients of biogeochemical properties may spatially structure biogeochemistry, with potential implications for marine ecosystems. For instance, striations may affect the mean horizontal distribution of surface phytoplankton biomass in the coastal transition zone (CTZ), or the structure and variability of the oxygen-minimum zone (OMZ). Here, we evaluate the expression of striations in satellite records of ocean color and in a set of numerically simulated biogeochemical tracers off central Chile (chlorophyll, carbon, primary production, oxygen, nutrients), averaged over the surface productive layer, the OMZ at intermediate depths or the water column. A multi-decadal hindcast simulation of the physical-biogeochemical dynamics was run over the period 1984-2013 using the ROMS-PISCES (for Regional Oceanic Modeling System - Pelagic Interactions Scheme for Carbon and Ecosystem Studies) platform at an eddy-resolving resolution. Satellite data and model outputs are spatially high-pass filtered to remove the large-scale signal and evaluate the match between striations and biogeochemical tracer anomalies in the model and observations. The effect of striations on the mean shape of the zonal gradient of phytoplankton biomass in the CTZ between eutrophic coastal waters and oligotrophic offshore waters is then deduced. The fraction of tracer anomalies due to striations is quantified, and the structuring roles of stationary and transient striations are respectively explored by matching striations and biogeochemical tracers on moving frames of variable widths from 6 months to several years.

Temporal and spatial variability of biological nitrogen fixation off the upwelling system of central Chile (35-38.5°S)

NASA Astrophysics Data System (ADS)

Fernandez, Camila; González, Maria Lorena; Muñoz, Claudia; Molina, Veronica; Farias, Laura

2015-05-01

Although N2 fixation could represent a supplementary source of bioavailable nitrogen in coastal upwelling areas and underlying oxygen minimum zones (OMZs), the limited data available prevent assessing its variability and biogeochemical significance. Here we report the most extensive N2 fixation data set gathered to date in the upwelling area off central Chile (36°S). It covers interannual to high frequency time scales in an area of about 82,500 km2 in the eastern South Pacific (ESP). Because heterotrophic N2 fixation may be regulated by DOM availability in the ESP, we conducted experiments at different oxygen conditions and included DOM amendments in order to test diazotrophic activity. Rates in the euphotic zone showed strong temporal variability which resulted in values reaching 0.5 nmol L-1 d-1 in 2006 (average 0.32 ± 0.17 nmol L-1 d-1) and up to 126.8 nmol L-1 d-1 (average 24.75 ± 37.9 nmol L-1 d-1) in 2011. N2 fixation in subsurface suboxic conditions (1.5 ± 1.16 nmol L-1 d-1) also occurred mainly during late summer and autumn while virtually absent in winter. The diversity of diazotrophs was dominated by heterotrophs, with higher richness in surface compared to OMZ waters. Rates in oxygen depleted conditions could exceed values obtained in the euphotic layer, but rates were not dependent on the availability of dissolved organic matter. N2 fixation also showed a positive correlation with total chlorophyll and the C:N ratio of phytoplankton, but not to the P excess compared to N. We conclude that the diazotrophic community responds to the composition of phytoplankton rather than the extent of N deficiency and the availability of bulk DOM in this system.

Influence of mesoscale eddies on the distribution of nitrous oxide in the eastern tropical South Pacific

NASA Astrophysics Data System (ADS)

Arévalo-Martínez, Damian L.; Kock, Annette; Löscher, Carolin R.; Schmitz, Ruth A.; Stramma, Lothar; Bange, Hermann W.

2016-02-01

Recent observations in the eastern tropical South Pacific (ETSP) have shown the key role of meso- and submesoscale processes (e.g. eddies) in shaping its hydrographic and biogeochemical properties. Off Peru, elevated primary production from coastal upwelling in combination with sluggish ventilation of subsurface waters fuels a prominent oxygen minimum zone (OMZ). Given that nitrous oxide (N2O) production-consumption processes in the water column are sensitive to oxygen (O2) concentrations, the ETSP is a region of particular interest to investigate its source-sink dynamics. To date, no detailed surveys linking mesoscale processes and N2O distributions as well as their relevance to nitrogen (N) cycling are available. In this study, we present the first measurements of N2O across three mesoscale eddies (two mode water or anticyclonic and one cyclonic) which were identified, tracked, and sampled during two surveys carried out in the ETSP in November-December 2012. A two-peak structure was observed for N2O, wherein the two maxima coincide with the upper and lower boundaries of the OMZ, indicating active nitrification and partial denitrification. This was further supported by the abundances of the key gene for nitrification, ammonium monooxygenase (amoA), and the gene marker for N2O production during denitrification, nitrite reductase (nirS). Conversely, we found strong N2O depletion in the core of the OMZ (O2 < 5 µmol L-1) to be consistent with nitrite (NO2-) accumulation and low levels of nitrate (NO3-), thus suggesting active denitrification. N2O depletion within the OMZ's core was substantially higher in the centre of mode water eddies, supporting the view that eddy activity enhances N-loss processes off Peru, in particular near the shelf break where nutrient-rich, productive waters from upwelling are trapped before being transported offshore. Analysis of eddies during their propagation towards the open ocean showed that, in general, "ageing" of mesoscale eddies tends to decrease N2O concentrations through the water column in response to the reduced supply of material to fuel N loss, although hydrographic variability might also significantly impact the pace of the production-consumption pathways for N2O. Our results evidence the relevance of mode water eddies for N2O distribution, thereby improving our understanding of the N-cycling processes, which are of crucial importance in times of climate change and ocean deoxygenation.

The microbiology of deep-sea hydrothermal vent plumes: ecological and biogeographic linkages to seafloor and water column habitats.

PubMed

Dick, Gregory J; Anantharaman, Karthik; Baker, Brett J; Li, Meng; Reed, Daniel C; Sheik, Cody S

2013-01-01

Hydrothermal plumes are an important yet understudied component of deep-sea vent microbial ecosystems. The significance of plume microbial processes can be appreciated from three perspectives: (1) mediation of plume biogeochemistry, (2) dispersal of seafloor hydrothermal vent microbes between vents sites, (3) as natural laboratories for understanding the ecology, physiology, and function of microbial groups that are distributed throughout the pelagic deep sea. Plume microbiology has been largely neglected in recent years, especially relative to the extensive research conducted on seafloor and subseafloor systems. Rapidly advancing technologies for investigating microbial communities provide new motivation and opportunities to characterize this important microbial habitat. Here we briefly highlight microbial contributions to plume and broader ocean (bio)geochemistry and review recent work to illustrate the ecological and biogeographic linkages between plumes, seafloor vent habitats, and other marine habitats such as oxygen minimum zones (OMZs), cold seeps, and oil spills. 16S rRNA gene surveys and metagenomic/-transcriptomic data from plumes point to dominant microbial populations, genes, and functions that are also operative in OMZs (SUP05, ammonia-oxidizing Archaea, and SAR324 Deltaproteobacteria) and hydrocarbon-rich environments (methanotrophs). Plume microbial communities are distinct from those on the seafloor or in the subsurface but contain some signatures of these habitats, consistent with the notion that plumes are potential vectors for dispersal of microorganisms between seafloor vent sites. Finally, we put forward three pressing questions for the future of deep-sea hydrothermal plume research and consider interactions between vents and oceans on global scales.

Rapid shift and millennial-scale variations in Holocene North Pacific Intermediate Water ventilation.

PubMed

Lembke-Jene, Lester; Tiedemann, Ralf; Nürnberg, Dirk; Gong, Xun; Lohmann, Gerrit

2018-05-22

The Pacific hosts the largest oxygen minimum zones (OMZs) in the world ocean, which are thought to intensify and expand under future climate change, with significant consequences for marine ecosystems, biogeochemical cycles, and fisheries. At present, no deep ventilation occurs in the North Pacific due to a persistent halocline, but relatively better-oxygenated subsurface North Pacific Intermediate Water (NPIW) mitigates OMZ development in lower latitudes. Over the past decades, instrumental data show decreasing oxygenation in NPIW; however, long-term variations in middepth ventilation are potentially large, obscuring anthropogenic influences against millennial-scale natural background shifts. Here, we use paleoceanographic proxy evidence from the Okhotsk Sea, the foremost North Pacific ventilation region, to show that its modern oxygenated pattern is a relatively recent feature, with little to no ventilation before six thousand years ago, constituting an apparent Early-Middle Holocene (EMH) threshold or "tipping point." Complementary paleomodeling results likewise indicate a warmer, saltier EMH NPIW, different from its modern conditions. During the EMH, the Okhotsk Sea switched from a modern oxygenation source to a sink, through a combination of sea ice loss, higher water temperatures, and remineralization rates, inhibiting ventilation. We estimate a strongly decreased EMH NPIW oxygenation of ∼30 to 50%, and increased middepth Pacific nutrient concentrations and carbon storage. Our results ( i ) imply that under past or future warmer-than-present conditions, oceanic biogeochemical feedback mechanisms may change or even switch direction, and ( ii ) provide constraints on the high-latitude North Pacific's influence on mesopelagic ventilation dynamics, with consequences for large oceanic regions. Copyright © 2018 the Author(s). Published by PNAS.

A Model for the Decrease in Amplitude of Carbon Isotope Excursions Throughout the Phanerozoic

NASA Astrophysics Data System (ADS)

Bachan, A.; Lau, K. V.; Saltzman, M.; Thomas, E.; Kump, L. R.; Payne, J.

2016-12-01

The geological cycling of carbon ties the ocean-­atmosphere carbon pool to Earth's biosphere and sedimentary reservoirs. Perturbations to this coupled system are recorded in the carbon-isotopic (δ13C) composition of marine carbonates. Large amplitude δ13C variations with durations of 0.5 - 10 m.y. are typically treated as individual events and interpreted accordingly. However, a recent compilation of Phanerozoic data reveals a decline in the variance of the δ13C record over time, suggesting a common underlying control. Here we propose that the redox structure of the continental shelves was a key determinant of the sensitivity of the geologic carbon cycle: when oxygen minimum zones (OMZs) were large, shallow, and prone to expansion, recurrent physical forcings (such as sea level and tectonics) would have had the capacity to drive large changes in the areal extent of OMZs, resulting in a strong leverage on δ13C values. Using a simple model of the geologic carbon cycle, we demonstrate that interactions between the carbon and phosphate cycles can result in amplification of recurrent forcings with periods in the 0.5 - 10 m.y. range. Thus, rather than requiring that physical forcings have their largest amplitude of variation on those time scales, enhanced sensitivity of the carbon cycle can account for the characteristic duration of δ13C excursions. Biologically mediated aspects of geologic carbon cycling, including the depth of bioturbation and evolution of pelagic calcifiers, likely drove a decline in the depth and extent of ocean anoxia over the Phanerozoic resulting in the stabilization of the geologic carbon cycle.

The microbiology of deep-sea hydrothermal vent plumes: ecological and biogeographic linkages to seafloor and water column habitats

PubMed Central

Dick, Gregory J.; Anantharaman, Karthik; Baker, Brett J.; Li, Meng; Reed, Daniel C.; Sheik, Cody S.

2013-01-01

Hydrothermal plumes are an important yet understudied component of deep-sea vent microbial ecosystems. The significance of plume microbial processes can be appreciated from three perspectives: (1) mediation of plume biogeochemistry, (2) dispersal of seafloor hydrothermal vent microbes between vents sites, (3) as natural laboratories for understanding the ecology, physiology, and function of microbial groups that are distributed throughout the pelagic deep sea. Plume microbiology has been largely neglected in recent years, especially relative to the extensive research conducted on seafloor and subseafloor systems. Rapidly advancing technologies for investigating microbial communities provide new motivation and opportunities to characterize this important microbial habitat. Here we briefly highlight microbial contributions to plume and broader ocean (bio)geochemistry and review recent work to illustrate the ecological and biogeographic linkages between plumes, seafloor vent habitats, and other marine habitats such as oxygen minimum zones (OMZs), cold seeps, and oil spills. 16S rRNA gene surveys and metagenomic/-transcriptomic data from plumes point to dominant microbial populations, genes, and functions that are also operative in OMZs (SUP05, ammonia-oxidizing Archaea, and SAR324 Deltaproteobacteria) and hydrocarbon-rich environments (methanotrophs). Plume microbial communities are distinct from those on the seafloor or in the subsurface but contain some signatures of these habitats, consistent with the notion that plumes are potential vectors for dispersal of microorganisms between seafloor vent sites. Finally, we put forward three pressing questions for the future of deep-sea hydrothermal plume research and consider interactions between vents and oceans on global scales. PMID:23720658

Physiological effects of environmental acidification in the deep-sea urchin Strongylocentrotus fragilis

NASA Astrophysics Data System (ADS)

Taylor, J. R.; Lovera, C.; Whaling, P. J.; Buck, K. R.; Pane, E. F.; Barry, J. P.

2014-03-01

Anthropogenic CO2 is now reaching depths over 1000 m in the Eastern Pacific, overlapping the Oxygen Minimum Zone (OMZ). Deep-sea animals are suspected to be especially sensitive to environmental acidification associated with global climate change. We have investigated the effects of elevated pCO2 and variable O2 on the deep-sea urchin Strongylocentrotus fragilis, a species whose range of 200-1200 m depth includes the OMZ and spans a pCO2 range of approx. 600-1200 μatm (approx. pH 7.6 to 7.8). Individuals were evaluated during two exposure experiments (1-month and 4 month) at control and three levels of elevated pCO2 at in situ O2 levels of approx. 10% air saturation. A treatment of control pCO2 at 100% air saturation was also included in experiment two. During the first experiment, perivisceral coelomic fluid (PCF) acid-base balance was investigated during a one-month exposure; results show S. fragilis has limited ability to compensate for the respiratory acidosis brought on by elevated pCO2, due in part to low non-bicarbonate PCF buffering capacity. During the second experiment, individuals were separated into fed and fasted experimental groups, and longer-term effects of elevated pCO2 and variable O2 on righting time, feeding, growth, and gonadosomatic index (GSI) were investigated for both groups. Results suggest that the acidosis found during experiment one does not directly correlate with adverse effects during exposure to realistic future pCO2 levels.

The influence of oxic degradation on the sedimentary biomarker record II. Evidence from Arabian Sea sediments

NASA Astrophysics Data System (ADS)

Sinninghe Damsté, Jaap S.; Rijpstra, W. Irene C.; Reichart, Gert-jan

2002-09-01

Biomarker accumulation rates in nine different time slices in three cores on and at the foot of a submarine high in the northern Arabian Sea (the Murray Ridge) were measured to investigate the influence of oxygen exposure time on the preservation of biomarker signals in the sedimentary record. All three sites experienced the same history of surface water productivity and sediment supply but had different bottom-water redox conditions due to their different positions (in, just below, well below) relative to the present location of the intense oxygen minimum zone (OMZ). Past variations in the intensity and position of the OMZ, known from a wide variety of proxies (TOC content, distribution and abundance of planktonic and benthic foraminifera and pteropods, trace metals, and δ 15N), enabled specific biomarker (i.e., n-alkanes, steroids, alkenones, alkyldiols, C 26 fatty acid, loliolide, biphytane diols, and archaeal tetraether lipids) accumulation rates at contrasting oxygen exposure times to be compared. The results indicate that these accumulation rates can vary by more than an order of magnitude for marine biomarkers. In addition, there are significant differences in the degree of oxic degradation of different types of biomarkers: Terrestrial n-alkanes are much more resistant than alkenones and n-alkyl diols, which are more refractory than steroids and biphytane diols. These differences in degree of oxic degradation indicate that biomarker distributions will change on increasing exposure to oxygen. These findings have a significant impact on the application of biomarkers to sedimentary settings in which oxygen exposure time is likely to change significantly.

The Third Indochina Conflict: Cambodia’s Total War

DTIC Science & Technology

2014-12-12

Military Region. NR National Road. OMZ Operational Military Zone. PAVN People’s Army of Vietnam. PMC Provincial Military Command. PRK People’s......of the Khmer Rouge regime escaped to the Cambodian-Thai border and started a resistance movement aimed at deposing the PRK and driving out the

Effects of hypoxia caused by mussel farming on benthic foraminifera in semi-closed Gamak Bay, South Korea.

PubMed

Lee, Yeon Gyu; Jeong, Da Un; Lee, Jung Sick; Choi, Yang Ho; Lee, Moon Ok

2016-08-15

Seawater monitoring and geochemical and benthic foraminiferal analysis of sediments were conducted to identify the effects of hypoxia created by a mussel farm on benthic foraminifera in a semi-closed bay. Extremely polluted reductive conditions with a high content of organic matter (OM) at >12.0% and oxygen minimum zones (OMZs) with dissolved oxygen (DO) <0.4mg∙L(-1) were formed below the mussel farm in the northwest area of Gamak Bay, and gradually diffused toward the south. Highly similar patterns of variation were observed in species diversity, abundance frequency, and benthic foraminiferal assemblage distributed from Elphidium subarcticum-Ammonia beccarii in the northwest area through E. subarcticum-A. beccarii-Trochammina hadai, E. subarcticum-A. beccarii-Elphidiumclavatum, and E. clavatum-Ammonia ketienziensis in the southern area. These phenomena were caused by hydrodynamics in the current water mass. It was thought that E. subarcticum is a bioindicator of organic pollution caused by the mussel farm. Copyright © 2016 Elsevier Ltd. All rights reserved.

Spatio-temporal biodiversity of soft bottom macrofaunal assemblages in shallow coastal waters exposed to episodic hypoxic events.

PubMed

Veas, Rodrigo; Hernández-Miranda, Eduardo; Quiñones, Renato A; Carrasco, Franklin D

2012-07-01

The Humboldt Current System (HCS) has one of the three most important oxygen minimum zones (OMZ) of the global ocean. Several studies have looked at the macrofaunal benthic assemblages inhabiting the continental shelf and shallow bays off central-southern Chile associated with low oxygen areas, but little is known about open coast macrofaunal communities within this zone, which are frequently subjected to the low oxygen conditions of Equatorial Subsurface Waters (ESSW). In order to assess local and mesoscale coastal macrofauna dynamics, the sampling area (ca. 40 linear km) was divided into seven local zones (Cobquecura, southern Cobquecura, northern Itata, Itata River mouth, external, southern Itata, and Coliumo). Eight oceanographic cruises were carried out between May 2006 and February 2008 covering 16 coastal sampling sites, between 36°07'S and 36°30'S. The macrofaunal assemblage was dominated by polychaetes, crustaceans, and mollusks. Our results suggest a high degree of temporal faunal stability on the mesoscale in soft bottom communities along the open coast, given the persistence of a faunal assemblage dominated by organisms tolerant of low oxygen conditions. While there is some local variability in community attributes, the main structuring factor for soft bottom communities in the shallow coastal area off central-southern Chile is the seasonal intrusion of low oxygen ESSW. Copyright © 2012 Elsevier Ltd. All rights reserved.

Dynamics of Productivity-Related Oxygen Minimum Zone along the Shirshov Ridge, Western Bering Sea, during the Last Glacial Termination

NASA Astrophysics Data System (ADS)

Ovsepyan, E.; Ivanova, E. V.; Tiedemann, R.

2017-12-01

Seasonally sea-ice covered Bering Sea is known to be a sensitive region to study rapid climatic oscillations. Based on benthic (BF) and planktic (PF) foraminiferal data from two sediment cores SO201-2-85KL (85KL, w.d. 968 m) and SO201-2-77KL (77KL, w.d. 2163 m) we reconstruct variations in intensity of oxygen minimum zone (OMZ) and its relation to sea-surface bioproductivity in the central and southern parts of the Shirshov Ridge, western Bering Sea, during the Termination I. A prevalence of suboxic BF group (Kaiho, 1994) in both cores mirrors moderately oxygenated intermediate and deep waters during LGM-Heinrich I interval. Rapid increase in percentages of dysoxic group is registered in the core 77KL at the onset of Bølling/Allerød. This implies that relatively low-oxygen conditions developed at 2 km water depths in the southwestern Bering Sea, but occurrence (20-30%) of suboxic group suggests that oxygen depletion was not dramatic. Simultaneous spikes of high-productivity species point to a bioproductivity rise above the southern part of the ridge. Increase in bioproductivity and decrease in oxygen content are detected 0.9 kyr later above the central part of Shirshov Ridge than above the southern one. This delay might reflect a gradual sea ice retreat from station 77 KL to 85KL during the global warming and sea level rise. Moderate bottom-water oxygenation is suggested for the intermediate depths of 1 km whereas no changes in relative oxygen content are found at 2 km below sea level during the Younger Dryas. Concurrent decrease in bioproductivity is reconstructed from BF records from the core 85KL. However, presence of high-productivity species and elevated BF accumulation rates in the core 77KL point to higher organic matter flux to the sea floor in the southern part of the ridge at the end of Younger Dryas. For the Early Holocene, bioproductivity rise and oxygen depletion in the intermediate waters are inferred from BF data. Strong dominance of dysoxic group in the 85KL indicates that oxygen content at the intermediate depths was much lower during the Early Holocene than during the Bølling/Allerød. The results provide evidence for complex development of OMZ in the western Bering Sea during the Termination I. They also demonstrate high potential to extend such studies to the North Pacific realm.

Mesopelagic fishes across the tropical and equatorial Atlantic: Biogeographical and vertical patterns

NASA Astrophysics Data System (ADS)

Olivar, M. Pilar; Hulley, P. Alexander; Castellón, Arturo; Emelianov, Mikhail; López, Cristina; Tuset, Víctor M.; Contreras, Tabit; Molí, Balbina

2017-02-01

In this investigation we analysed the changes in fish species occurrences and relative abundances across the tropical and equatorial Atlantic, and their vertical distribution patterns in relation to the different environmental scenarios. The study covers a wide region encompassing different water masses, and marked differences in productivity, from an oligotrophic zone close to the Brazilian coast, to a very productive upwelling region close to the Northwest African upwelling. Fishes were collected with a medium-sized midwater trawl (Mesopelagos), complemented by hauls made with a macrozooplankton net (MOCNESS). Species richness in the region was higher than in subtropical, temperate and cold regions. The total number of species and their overall abundance was lower in the stations closer to the Brazilian coast. Abundant species across the entire region were the gonostomatids Cyclothone alba, Cyclothone acclinidens, Cyclothone pallida and Cyclothone pseudopallida, the myctophid Lampanyctus alatus, the sternoptychid Sternoptyx diaphana, and the phosichthyid Vinciguerria nimbaria. The occurrences and abundances of C. parapallida, Lampanyctus nobilis and Lepidophanes guentheri were related to zones where AAIW waters occupied the mesopelagic layers, while other species such as Cyclothone livida and Polyipnus polli increased their abundance when AAIW disappears from their living depths. The presence of Eastern North Atlantic Central Water (ENACW) was associated with the occurrence of several myctophids (Benthosema glaciale, Ceratoscopelus maderensis, Diaphus holti, Diaphus rafinesquii, Hygophum hygomii, Lampanyctus crocodilus, Myctophum punctatum, Symbolophorus veranyi), and the gonostomatid Cyclothone braueri. In spite of the important differences in hydrographic features across the tropical and equatorial Atlantic, all stations showed either the general night migration into the epipelagic layers carried out by myctophids, phosicthyids, and some stomiids, or the presence of the several species of Cyclothone, sternoptychids and melamphaeids that remain in the mesopelagic layers, both day and night. The oxygen minimum zone (OMZ) at mesopelagic depths in the north-eastern sector does not seem to disrupt diel vertical migration. Day-night distributions in our study proved that mesopelagic migratory species are capable of crossing these wide hypoxic layers, and that some species such as Diaphus vanhoeffeni remain in these layers during the day. Other non-migratory fishes (Cyclothone spp. and S. diaphana) proved to be widely tolerant to these low oxygen concentrations, as shown by their high numerical abundances in the OMZ.

On the preservation of laminated sediments along the western margin of North America

USGS Publications Warehouse

VanGeen, A.; Zheng, Yen; Bernhard, J.M.; Cannariato, K.G.; Carriquiry, J.; Dean, W.E.; Eakins, B.W.; Ortiz, J.D.; Pike, J.

2003-01-01

Piston, gravity, and multicores as well as hydrographic data were collected along the Pacific margin of Baja California to reconstruct past variations in the intensity of the oxygen-minimum zone (OMZ). Gravity cores collected from within the OMZ north of 24??N did not contain laminated surface sediments even though bottom water oxygen (BWO) concentrations were close to 5 ??mol/kg. However, many of the cores collected south of 24??N did contain millimeter- to centimeter-scale, brown to black laminations in Holocene and older sediments but not in sediments deposited during the Last Glacial Maximum. In addition to the dark laminations, Holocene sediments in Soledad Basin, silled at 290 m, also contain white coccolith laminae that probably represent individual blooms. Two open margin cores from 430 and 700 m depth that were selected for detailed radiocarbon dating show distinct transitions from bioturbated glacial sediment to laminated Holocene sediment occurring at 12.9 and 11.5 ka, respectively. The transition is delayed and more gradual (11.3-10.0 ka) in another dated core from Soledad Basin. The observations indicate that bottom-water oxygen concentrations dropped below a threshold for the preservation of laminations at different times or that a synchronous hydrographic change left an asynchronous sedimentary imprint due to local factors. With the caveat that laminated sections should therefore not be correlated without independent age control, the pattern of older sequences of laminations along the North American western margin reported by this and previous studies suggests that multiple patterns of regional productivity and ventilation prevailed over the past 60 kyr. Copyright 2003 by the American Geophysical Union.

Biological nitrate transport in sediments on the Peruvian margin mitigates benthic sulfide emissions and drives pelagic N loss during stagnation events

NASA Astrophysics Data System (ADS)

Dale, A. W.; Sommer, S.; Lomnitz, U.; Bourbonnais, A.; Wallmann, K.

2016-06-01

Benthic N cycling in the Peruvian oxygen minimum zone (OMZ) was investigated at ten stations along 12 °S from the middle shelf (74 m) to the upper slope (1024 m) using in situ flux measurements, sediment biogeochemistry and modeling. Middle shelf sediments were covered by mats of the filamentous bacteria Thioploca spp. and contained a large 'hidden' pool of nitrate that was not detectable in the porewater. This was attributed to a biological nitrate reservoir stored within the bacteria to oxidize sulfide during 'dissimilatory nitrate reduction to ammonium' (DNRA). The extremely high rates of DNRA on the shelf (15.6 mmol m-2 d-1 of N), determined using an empirical steady-state model, could easily supply all the ammonium requirements for anammox in the water column. The model further showed that denitrification by foraminifera may account for 90% of N2 production at the lower edge of the OMZ. At the time of sampling, dissolved oxygen was below detection limit down to 400 m and the water body overlying the shelf had stagnated, resulting in complete depletion of nitrate and nitrite. A decrease in the biological nitrate pool was observed on the shelf during fieldwork concomitant with a rise in porewater sulfide levels in surface sediments to 2 mM. Using a non-steady state model to simulate this natural anoxia experiment, these observations were shown to be consistent with Thioploca surviving on a dwindling intracellular nitrate reservoir to survive the stagnation period. The model shows that sediments hosting Thioploca are able to maintain high ammonium fluxes for many weeks following stagnation, potentially sustaining pelagic N loss by anammox. In contrast, sulfide emissions remain low, reducing the economic risk to the Peruvian fishery by toxic sulfide plume development.

Impacts of hypoxia on the structure and processes in pelagic communities (zooplankton, macro-invertebrates and fish)

NASA Astrophysics Data System (ADS)

Ekau, W.; Auel, H.; Pörtner, H.-O.; Gilbert, D.

2010-05-01

Dissolved oxygen (DO) concentration in the water column is an environmental parameter that is crucial for the successful development of many pelagic organisms. Hypoxia tolerance and threshold values are species- and stage-specific and can vary enormously. While some fish species may suffer from oxygen values of less than 3 mL O2 L-1 through impacted growth, development and behaviour, other organisms such as euphausiids may survive DO levels as low as 0.1 mL O2 L-1. A change in the average or the range of DO may have significant impacts on the survival of certain species and hence on the species composition in the ecosystem with consequent changes in trophic pathways and productivity. Evidence for the deleterious effects of oxygen depletion on pelagic species is scarce, particularly in terms of the effect of low oxygen on development, recruitment and patterns of migration and distribution. While planktonic organisms have to cope with variable DOs and exploit adaptive mechanisms, nektonic species may avoid areas of unfavourable DO and develop adapted migration strategies. Planktonic organisms may only be able to escape vertically, above or beneath the Oxygen Minimum Zone (OMZ). In shallow areas only the surface layer can serve as a refuge, but in deep waters many organisms have developed vertical migration strategies to use, pass through and cope with the OMZ. This paper elucidates the role of DO for different taxa in the pelagic realm and the consequences of low oxygen for foodweb structure and system productivity. We describe processes in two contrasting systems, the semi-enclosed Baltic Sea and the coastal upwelling system of the Benguela Current to demonstrate the consequences of increasing hypoxia on ecosystem functioning and services.

Locomotion and behavior of Humboldt squid, Dosidicus gigas, in relation to natural hypoxia in the Gulf of California, Mexico.

PubMed

Gilly, William F; Zeidberg, Louis D; Booth, J Ashley T; Stewart, Julia S; Marshall, Greg; Abernathy, Kyler; Bell, Lauren E

2012-09-15

We studied the locomotion and behavior of Dosidicus gigas using pop-up archival transmitting (PAT) tags to record environmental parameters (depth, temperature and light) and an animal-borne video package (AVP) to log these parameters plus acceleration along three axes and record forward-directed video under natural lighting. A basic cycle of locomotor behavior in D. gigas involves an active climb of a few meters followed by a passive (with respect to jetting) downward glide carried out in a fins-first direction. Temporal summation of such climb-and-glide events underlies a rich assortment of vertical movements that can reach vertical velocities of 3 m s(-1). In contrast to such rapid movements, D. gigas spends more than 80% of total time gliding at a vertical velocity of essentially zero (53% at 0±0.05 m s(-1)) or sinking very slowly (28% at -0.05 to -0.15 m s(-1)). The vertical distribution of squid was compared with physical features of the local water column (temperature, oxygen and light). Oxygen concentrations of ≤20 μmol kg(-1), characteristic of the midwater oxygen minimum zone (OMZ), can influence the daytime depth of squid, but this depends on location and season, and squid can 'decouple' from this environmental feature. Light is also an important factor in determining daytime depth, and temperature can limit nighttime depth. Vertical velocities were compared over specific depth ranges characterized by large differences in dissolved oxygen. Velocities were generally reduced under OMZ conditions, with faster jetting being most strongly affected. These data are discussed in terms of increased efficiency of climb-and-glide swimming and the potential for foraging at hypoxic depths.

Inorganic geochemical indicators of glacial-interglacial changes in productivity and anoxia on the California continental margin

USGS Publications Warehouse

Dean, W.E.; Gardner, J.V.; Piper, D.Z.

1997-01-01

Evidence from sediments in cores collected from within the present oxygen-minimum zone (OMZ; 600-1200 m) on the central and northern California margins record several episodes during the last interstadial (OIS-3, ca. 60-24 ka) of deposition of laminated sediments containing elevated concentrations of several trace elements indicative of anoxic conditions (e.g., Mo, Ni, Zn, and Cu). The presence of abundant well-preserved organic matter, as well as lack of bioturbation and the presence of elevated concentrations of Mo and other trace elements, all support the theory that the OMZ in the northeastern Pacific Ocean was more intense, possibly anoxic, at several times during the late Pleistocene. Sediments of all ages in cores from the southern California margin contain elevated concentrations of Mo, suggesting that this area has always had higher rates of sulfate reduction than either the central or northern California areas. Most of the Ba in sediments in all cores collected on the upper continental slope (200-2700 m) off California and southern Oregon is derived from detrital clastic material, and this source did not change much in time. However, the amount of biogenic Ba did vary with time, and these variations closely follow the temporal variations in organic C (Corg) mass accumulation rate. Using Ba and Corg mass accumulation rates as proxy variables for productivity, all cores show that organic productivity under the California Current upwelling system was highest during OIS-3 and the Holocene, and lowest during the last glacial interval (LGI, ca. 24-10 ka). All paleoproductivity proxy variables indicate that the southern California area has always experienced higher productivity than other areas under the California Current, at least over the last 50 ky. Copyright ?? 1997 Elsevier Science Ltd.

Nitrogen fixation in denitrified marine waters.

PubMed

Fernandez, Camila; Farías, Laura; Ulloa, Osvaldo

2011-01-01

Nitrogen fixation is an essential process that biologically transforms atmospheric dinitrogen gas to ammonia, therefore compensating for nitrogen losses occurring via denitrification and anammox. Currently, inputs and losses of nitrogen to the ocean resulting from these processes are thought to be spatially separated: nitrogen fixation takes place primarily in open ocean environments (mainly through diazotrophic cyanobacteria), whereas nitrogen losses occur in oxygen-depleted intermediate waters and sediments (mostly via denitrifying and anammox bacteria). Here we report on rates of nitrogen fixation obtained during two oceanographic cruises in 2005 and 2007 in the eastern tropical South Pacific (ETSP), a region characterized by the presence of coastal upwelling and a major permanent oxygen minimum zone (OMZ). Our results show significant rates of nitrogen fixation in the water column; however, integrated rates from the surface down to 120 m varied by ∼30 fold between cruises (7.5±4.6 versus 190±82.3 µmol m(-2) d(-1)). Moreover, rates were measured down to 400 m depth in 2007, indicating that the contribution to the integrated rates of the subsurface oxygen-deficient layer was ∼5 times higher (574±294 µmol m(-2) d(-1)) than the oxic euphotic layer (48±68 µmol m(-2) d(-1)). Concurrent molecular measurements detected the dinitrogenase reductase gene nifH in surface and subsurface waters. Phylogenetic analysis of the nifH sequences showed the presence of a diverse diazotrophic community at the time of the highest measured nitrogen fixation rates. Our results thus demonstrate the occurrence of nitrogen fixation in nutrient-rich coastal upwelling systems and, importantly, within the underlying OMZ. They also suggest that nitrogen fixation is a widespread process that can sporadically provide a supplementary source of fixed nitrogen in these regions.

Seasonal and high-frequency measurements of pH, oxygen and aragonite saturation state in a coral reef: Cabo Pulmo, Mexico.

NASA Astrophysics Data System (ADS)

Norzagaray, O.; Martin Hernandez-Ayon, J. M.; Calderon Aguilera, L. E.; Reyes-Bonilla, H.; Castro, R.; Trasviña, A.

2016-02-01

Cabo Pulmo reef is located in the coastal area within the oxygen minimum zone (OMZ), which has been reported as shallow as 70m, and characterized by CO2-rich waters (>2200 μmolkg-1) and low pH (<7.7). To date it is unknown whether the OMZ waters influence these coral reef at any point of the year, or during certain oceanographic episodes, therefore, it is important to know the temporal variability of these parameters. This study presents high frequency data series from November 2013 to June 2014 from a SeapHOX sensor deployed at 15 m depth and 1.5 km from shore. The pH series was calibrated with discrete samples (total carbon and alkalinity measurements). A high-resolution aragonite saturation state (< Ωar) series was calculated from pH series and total alkalinity. Discrete and continuous measurements showed the seasonal influence of two water masses, the Gulf of California water during winter (GCW), and the surface Tropical water (TSW) during spring-summer. From December to April the conditions with the lowest pH were found (<Ωar), related to GCW, and two months with TSW; the highest pH values (> Ωar) were from May to June. During winter-spring (mostly-TSW) were present the most optimal conditions for coral calcification (>Ωar). Dissolved oxygen (OD) was always up to 3.4 mlL-1. However, two events (5-10 days length) arose in winter (February/TSW) and summer (June/GCW) with low pH (<7.9), low Ωar (<2.6), low temperature (<22oC), and low DO (<4 mlL-1), threshold values reported to cause negative effects on coral calcification and with exposure times on the order of days.

Plankton dynamics and biogeochemical fluxes in the Costa Rica Dome: introduction to the CRD Flux and Zinc Experiments.

PubMed

Landry, Michael R; De Verneil, Alain; Goes, Joaquim I; Moffett, James W

2016-03-01

The Costa Rica Dome (CRD) is an open-ocean upwelling system in the Eastern Tropical Pacific that overlies the ocean's largest oxygen minimum zone (OMZ). The region has unique characteristics, biomass dominance by picophytoplankton, suppressed diatoms, high biomass of higher consumers and presumptive trace metal limitation, but is poorly understood in terms of pelagic stock and process relationships, including productivity and production controls. Here, we describe the goals, project design, physical context and major findings of the Flux and Zinc Experiments cruise conducted in June-July 2010 to assess trophic flux relationships and elemental controls on phytoplankton in the CRD. Despite sampling during a year of suppressed summertime surface chlorophyll, cruise results show high productivity (∼1 g C m -2 day -1 ), high new production relative to export, balanced production and grazing, disproportionate biomass-specific productivity of large phytoplankton and high zooplankton stocks. Zinc concentrations are low in surface waters relative to phosphorous and silicate in other regions, providing conditions conducive to picophytoplankton, like Synechococcus , with low Zn requirements. Experiments nonetheless highlight phytoplankton limitation or co-limitation by silicic acid, driven by a strong silica pump that is linked to low dissolution of biogenic silica in the cold shallow thermocline of the lower euphotic zone.

Global compilation of marine varve records

NASA Astrophysics Data System (ADS)

Schimmelmann, Arndt; Lange, Carina B.; Schieber, Juergen; Francus, Pierre; Ojala, Antti E. K.; Zolitschka, Bernd

2017-04-01

Marine varves contain highly resolved records of geochemical and other paleoceanographic and paleoenvironmental proxies with annual to seasonal resolution. We present a global compilation of marine varved sedimentary records throughout the Holocene and Quaternary covering more than 50 sites worldwide. Marine varve deposition and preservation typically depend on environmental and sedimentological conditions, such as a sufficiently high sedimentation rate, severe depletion of dissolved oxygen in bottom water to exclude bioturbation by macrobenthos, and a seasonally varying sedimentary input to yield a recognizable rhythmic varve pattern. Additional oceanographic factors may include the strength and depth range of the Oxygen Minimum Zone (OMZ) and regional anthropogenic eutrophication. Modern to Quaternary marine varves are not only found in those parts of the open ocean that comply with these conditions, but also in fjords, embayments and estuaries with thermohaline density stratification, and nearshore 'marine lakes' with strong hydrologic connections to ocean water. Marine varves have also been postulated in pre-Quaternary rocks. In the case of non-evaporitic laminations in fine-grained ancient marine rocks, such as banded iron formations and black shales, laminations may not be varves but instead may have multiple alternative origins such as event beds or formation via bottom currents that transported and sorted silt-sized particles, clay floccules, and organic-mineral aggregates in the form of migrating bedload ripples. Modern marine ecosystems on continental shelves and slopes, in coastal zones and in estuaries are susceptible to stress by anthropogenic pressures, for example in the form of eutrophication, enhanced OMZs, and expanding ranges of oxygen-depletion in bottom waters. Sensitive laminated sites may play the important role of a 'canary in the coal mine' where monitoring the character and geographical extent of laminations/varves serves as a diagnostic tool to judge the environmental conditions and longer-term trends of benthic ecosystems. Analyses of modern varve records will gain importance for simultaneously providing high-resolution and longer-term perspectives. Especially in regions with limited resources or at remote sites, the comparatively low cost of high-resolution sediment analyses for environmental monitoring is an essential advantage over continuous monitoring of oceanographic conditions in the water column.

Oceanic N2O emissions in the 21st century

NASA Astrophysics Data System (ADS)

Martinez-Rey, J.; Bopp, L.; Gehlen, M.; Tagliabue, A.; Gruber, N.

2014-12-01

The ocean is a substantial source of nitrous oxide (N2O) to the atmosphere, but little is known on how this flux might change in the future. Here, we investigate the potential evolution of marine N2O emissions in the 21st century in response to anthropogenic climate change using the global ocean biogeochemical model NEMO-PISCES. We implemented two different parameterizations of N2O production, which differ primarily at low oxygen (O2) conditions. When forced with output from a climate model simulation run under the business-as-usual high CO2 concentration scenario (RCP8.5), our simulations suggest a decrease of 4 to 12% in N2O emissions from 2005 to 2100, i.e., a reduction from 4.03/3.71 to 3.54/3.56 Tg N yr-1 depending on the parameterization. The emissions decrease strongly in the western basins of the Pacific and Atlantic oceans, while they tend to increase above the Oxygen Minimum Zones (OMZs), i.e., in the Eastern Tropical Pacific and in the northern Indian Ocean. The reduction in N2O emissions is caused on the one hand by weakened nitrification as a consequence of reduced primary and export production, and on the other hand by stronger vertical stratification, which reduces the transport of N2O from the ocean interior to the ocean surface. The higher emissions over the OMZ are linked to an expansion of these zones under global warming, which leads to increased N2O production associated primarily with denitrification. From the perspective of a global climate system, the averaged feedback strength associated with the projected decrease in oceanic N2O emissions amounts to around -0.009 W m-2 K-1, which is comparable to the potential increase from terrestrial N2O sources. However, the assesment for a compensation between the terrestrial and marine feedbacks calls for an improved representation of N2O production terms in fully coupled next generation of Earth System Models.

The Humboldt Current System: Ecosystem components and processes, fisheries, and sediment studies

NASA Astrophysics Data System (ADS)

Montecino, Vivian; Lange, Carina B.

2009-12-01

In the Humboldt Current System (HCS), biological and non-biological components, ecosystem processes, and fisheries are known to be affected by multi-decadal, inter-annual, annual, and intra-seasonal scales. The interplay between atmospheric variability, the poleward undercurrent, the shallow oxygen minimum zone (OMZ), and the fertilizing effect of coastal upwelling and overall high primary production rates drive bio-physical interactions, the carbon biomass, and fluxes of gases and particulate and dissolved matter through the water column. Coastal upwelling (permanent and seasonally modulated off Peru and northern Chile, and markedly seasonal between 30°S and 40°S) is the key process responsible for the high biological productivity in the HCS. At present, the western coast of South America produces more fish per unit area than any other region in the world ocean (i.e. ∼7.5 × 10 6 t of anchoveta were landed in 2007). Climate changes on different temporal scales lead to alterations in the distribution ranges of anchoveta and sardine populations and shifts in their dominance throughout the HCS. The factors affecting the coastal marine ecosystem that reverberate in the fisheries are crucial from a social perspective, since the economic consequences of mismanagement can be severe. Fish remains are often well-preserved in sediment settings under the hypoxic conditions of the OMZ off Peru and Chile, and reveal multi-decadal variability and centennial-scale changes in fish populations. Sediment studies from the Chilean continental margin encompassing the last 20,000 years of deposition reveal changes in sub-surface conditions in the HCS during deglaciation, interpreted to include: a major reorganization of the OMZ; a deglacial increase in denitrification decoupled from local marine productivity; and higher deglacial and Holocene paleoproductivities compared to the Last Glacial Maximum in central-south Chile (35-37°S) while this scheme is reversed for north-central Chile. Multi-scale, interdisciplinary approaches and focused research groups are needed to understand air-sea interactions, plankton dynamics, biomass removal by fisheries, and the transformation and fluxes of matter across the different HCS components. In this paper, we present a multidisciplinary synthesis of the HCS that covers its physics, atmosphere, primary and secondary production, medium and high trophic levels, fisheries including management aspects, and relevant sedimentary studies.

The trophic and metabolic pathways of foraminifera in the Arabian Sea: evidence from cellular stable isotopes

NASA Astrophysics Data System (ADS)

Jeffreys, R. M.; Fisher, E. H.; Gooday, A. J.; Larkin, K. E.; Billett, D. S. M.; Wolff, G. A.

2015-03-01

The Arabian Sea is a region of elevated productivity with the highest globally recorded fluxes of particulate organic matter (POM) to the deep ocean, providing an abundant food source for fauna at the seafloor. However, benthic communities are also strongly influenced by an intense oxygen minimum zone (OMZ), which impinges on the continental slope from 100 to 1000 m water depth. We compared the trophic ecology of foraminifera on the Oman and Pakistan margins of the Arabian Sea (140-3185 m water depth). These two margins are contrasting both in terms of the abundance of sedimentary organic matter and the intensity of the OMZ. Organic carbon concentrations of surficial sediments were higher on the Oman margin (3.32 ± 1.4%) compared to the Pakistan margin (2.45 ± 1.1%) and sedimentary organic matter (SOM) quality estimated from the Hydrogen Index was also higher on the Oman margin (300-400 mg HC mg TOC-1) compared to the Pakistan margin (< 250 mg HC mg TOC-1). The δ13C and δ15N values of sediments were similar on both margins (-20 and 8‰, respectively). Stable isotope analysis (SIA) showed that foraminiferal cells had a wide range of δ13C values (-25.5 to -11.5‰), implying that they utilise multiple food sources; indeed δ13C values varied between depths, foraminiferal types and between the two margins. Foraminifera had broad ranges in δ15N values (-7.8 to 27.3‰). The enriched values suggest that some species may store nitrate to utilise in respiration; this was most notable on the Pakistan margin. Depleted foraminiferal δ15N values, particularly at the Oman margin, may reflect feeding on chemosynthetic bacteria. We suggest that differences in productivity regimes may be responsible for the differences observed in foraminiferal isotopic composition. In addition, at the time of sampling, whole jellyfish carcasses (Crambionella orsini) and a carpet of jelly detritus were observed across the Oman margin transect. Associated chemosynthetic bacteria may have provided an organic-rich food source for foraminifera at these sites. Our data suggest that foraminifera in OMZ settings can utilise a variety of food sources and metabolic pathways to meet their energetic demands.

Mimicking the oxygen minimum zones: stimulating interaction of aerobic archaeal and anaerobic bacterial ammonia oxidizers in a laboratory-scale model system

PubMed Central

Yan, Jia; Haaijer, Suzanne C M; Op den Camp, Huub J M; Niftrik, Laura; Stahl, David A; Könneke, Martin; Rush, Darci; Sinninghe Damsté, Jaap S; Hu, Yong Y; Jetten, Mike S M

2012-01-01

In marine oxygen minimum zones (OMZs), ammonia-oxidizing archaea (AOA) rather than marine ammonia-oxidizing bacteria (AOB) may provide nitrite to anaerobic ammonium-oxidizing (anammox) bacteria. Here we demonstrate the cooperation between marine anammox bacteria and nitrifiers in a laboratory-scale model system under oxygen limitation. A bioreactor containing ‘Candidatus Scalindua profunda’ marine anammox bacteria was supplemented with AOA (Nitrosopumilus maritimus strain SCM1) cells and limited amounts of oxygen. In this way a stable mixed culture of AOA, and anammox bacteria was established within 200 days while also a substantial amount of endogenous AOB were enriched. ‘Ca. Scalindua profunda’ and putative AOB and AOA morphologies were visualized by transmission electron microscopy and a C18 anammox [3]-ladderane fatty acid was highly abundant in the oxygen-limited culture. The rapid oxygen consumption by AOA and AOB ensured that anammox activity was not affected. High expression of AOA, AOB and anammox genes encoding for ammonium transport proteins was observed, likely caused by the increased competition for ammonium. The competition between AOA and AOB was found to be strongly related to the residual ammonium concentration based on amoA gene copy numbers. The abundance of archaeal amoA copy numbers increased markedly when the ammonium concentration was below 30 μM finally resulting in almost equal abundance of AOA and AOB amoA copy numbers. Massive parallel sequencing of mRNA and activity analyses further corroborated equal abundance of AOA and AOB. PTIO addition, inhibiting AOA activity, was employed to determine the relative contribution of AOB versus AOA to ammonium oxidation. The present study provides the first direct evidence for cooperation of archaeal ammonia oxidation with anammox bacteria by provision of nitrite and consumption of oxygen. PMID:23057688

Pleistocene Thermocline Reconstruction and Oxygen Minimum Zone Evolution in the Maldives

NASA Astrophysics Data System (ADS)

Yu, S. M.; Wright, J.

2017-12-01

Drift deposits of the southern flank the Kardiva Channel in the eastern Inner Sea of the Maldives provide a complete record of Pleistocene water column changes in conjunction with monsoon cyclicity and fluctuations in the current system. We sampled IODP Site 359-U1467 to reconstruct water column using foraminiferal stable isotope records. This unlithified lithostratigraphic unit is rich in well-preserved microfossils and has an average sedimentation rate of 3.4 cm/yr. Marine Isotope Stages 1-6 were identified and show higher sedimentation rates during the interglacial sections approaching 6 cm/kyr. We present the δ13C and δ18O record of planktonic and benthic foraminiferal species taken at intervals of 3 cm. Globigerinoides ruber was used to constrain surface conditions. The thermocline dwelling species, Globorotalia menardii, was chosen to monitor fluctuations in the thermocline compared to the mixed layer. Lastly, the δ13C of the benthic species, Cibicidoides subhaidingerii and Planulina renzi, reveal changes to the bottom water ventilation and expansion of oxygen minimum zones over time. All three taxa recorded similar changes in δ18O over the glacial/interglacial cycles which is remarkable given the large sea level change ( 120 m) and the relatively shallow water depth ( 450 m). There is a small increase in the δ13C gradient during the glacial intervals which might reflect less ventilated bottom waters in the Inner Sea. This multispecies approach allows us to better constrain the thermocline hydrography and suggests that changes in the OMZ thickness are driven by the intensification of the monsoon cycles while painting a more cohesive picture to the changes in the water column structure.

Preventative effect of OMZ-SPT on lipopolysaccharide-induced acute lung injury and inflammation via nuclear factor-kappa B signaling in mice

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Ting; Department of Respiratory Medicine, Children's Hospital of Chongqing Medical University, Chongqing, 400014; Hou, Wanru

Acute lung injury (ALI) is an early pathophysiologic change in acute respiratory distress syndrome and its management can be challenging. Omalizumab (Xolair™) is a recombinant DNA-derived, humanized antibody. OMZ-SPT is a polypeptide on the heavy chain of omalizumab monoclonal antibody. Here, we found that intramuscular administration of OMZ-SPT significantly improved survival and attenuated lung inflammation in female C57BL/6 mice suffering from lipopolysaccharide (LPS)-induced ALI. We also demonstrated that OMZ-SPT can inhibit expression of the inflammatory cytokines tumor necrosis factor-α, interleukin-1β and interleukin-6 by ELISA in mice suffering from LPS-induced ALI and a mouse macrophage line (RAW264.7 cells). In addition, we showedmore » that OMZ-SPT inhibited LPS-induced activation of nuclear factor-kappa B (NF-κB) signaling and total expression of NF-κB by western blotting. These data suggest that OMZ-SPT could be a novel therapeutic choice for ALI. - Highlights: • OMZ-SPT is a polypeptide on the heavy chain of omalizumab monoclonal antibody. • Omalizumab (Xolair™) have anti-inflammatory effects. • OMZ-SPT can inhibit inflammatory responses and lung injury in LPS-induced ALI mice. • Protective effect of OMZ-SPT on ALI is due to inhibition of NF-κB signaling. • OMZ-SPT could be a novel therapeutic choice for ALI.« less

Denitrifying SUP05 Require Exogenous Nitrogen

NASA Astrophysics Data System (ADS)

Shah, V.; Chang, B. X.; Morris, R. M.

2016-02-01

Members of the SUP05 clade of gamma-proteobacteria are among the most abundant chemoautotrophs in the ocean. Environmental sequencing studies suggest that they have critical roles in mediating carbon fixation, denitrification, and sulfur oxidation in oxygen minimum zones (OMZs). They have evaded cultivation and little is known about the specific growth requirements or substrate ranges that determine their abundance, distribution and impact on marine biogeochemical cycles. We evaluated the genetic potential of an isolate from the SUP05 clade "Ca. Thioglobus autotrophica strain EF1" to fix carbon, reduce nitrogen and oxidize sulfur under anaerobic growth conditions. Growth experiments support genomic predictions, indicating that strain EF1 is a facultatively anaerobic sulfur-oxidizing chemolithoautotroph that reduces nitrate to nitrite and nitric oxide to nitrous oxide. These experiments also revealed that strain EF1 is limited for growth by ammonium, which indicates that it requires an exogenous source of nitrogen for biosynthesis. Evidence that SUP05 cells produce nitrite and nitrous oxide and require exogenous nitrogen suggests that they have important roles in nitrogen cycling and that their growth is ultimately limited by the degradation of sinking organic matter.

High-resolution responses of sedimentary δ15N to climate change in the southern California for the past 2000 years

NASA Astrophysics Data System (ADS)

Wang, Y.; Hendy, I. L.; Thunell, R.

2017-12-01

The short duration of instrumental records limits our understanding of nitrogen loss to denitrification on interannual to centennial time scales. Bulk sediment δ15N is widely applied as a proxy for water column denitrification in oxygen minimum zones (OMZ). Lying within the California OMZ, Santa Barbara Basin (SBB) provides an ideal location for producing a high-resolution δ15N record for denitrification reconstruction. Here we present a high-resolution ( 1-2 y) 2000-year record of δ15N from SPR0901-03KC (34°16.99'N, 120°2.408'W; 586 m depth). Grey flood layer sediments are associated with abrupt decreases of 0.9 to 2.5 ‰ in the δ15N record. After removal of flood-affected samples from the record, δ15N varies from 6.8 to 8.7 ‰ with an average of 7.7 ‰. After 1800 AD δ15N experienced a sustained decrease to its minimum at the core top. Comparison with the principal components (PCs) of scanning X-ray fluorescence (XRF) elemental counts allow for further investigation of factors driving δ15N variations. The first PC (PC1) of scanning XRF elemental records contains high loadings for lithogenic sediment components while the second PC (PC2) has high loadings for biogenic components. The δ15N record is positively correlated with PC2 (r=0.2521, p<0.01) throughout the core while negatively correlated with PC1 relationship (r=-0.2596, p<0.01) between AD 1000-1800. Peaks of δ15N and PC2 (high primary productivity) coincide with intensified upwelling intervals supported by high anchovy scale counts, and bloom-forming diatoms (Rhizosolenia spp.) and silicoflagellates (D. speculum) from a nearby core. These upwelling intervals coincide with low PC1 (low river runoff). The coherent variability appears to indicate an atmospheric influence on the marine environment through the relative intensity of North Pacific High (NPH). Enhanced NPH induces stronger coastal upwelling with associated upward advection of δ15N-enriched subsurface water and higher primary productivity in the surface ocean. Subsurface waters are fed by California Undercurrent originated from the north Eastern Tropical Pacific, where active water column denitrification occurs generating high δ15N values.

Projections of oceanic N2O emissions in the 21st century using the IPSL Earth system model

NASA Astrophysics Data System (ADS)

Martinez-Rey, J.; Bopp, L.; Gehlen, M.; Tagliabue, A.; Gruber, N.

2015-07-01

The ocean is a substantial source of nitrous oxide (N2O) to the atmosphere, but little is known about how this flux might change in the future. Here, we investigate the potential evolution of marine N2O emissions in the 21st century in response to anthropogenic climate change using the global ocean biogeochemical model NEMO-PISCES. Assuming nitrification as the dominant N2O formation pathway, we implemented two different parameterizations of N2O production which differ primarily under low-oxygen (O2) conditions. When forced with output from a climate model simulation run under the business-as-usual high-CO2 concentration scenario (RCP8.5), our simulations suggest a decrease of 4 to 12 % in N2O emissions from 2005 to 2100, i.e., a reduction from 4.03/3.71 to 3.54/3.56 TgN yr-1 depending on the parameterization. The emissions decrease strongly in the western basins of the Pacific and Atlantic oceans, while they tend to increase above the oxygen minimum zones (OMZs), i.e., in the eastern tropical Pacific and in the northern Indian Ocean. The reduction in N2O emissions is caused on the one hand by weakened nitrification as a consequence of reduced primary and export production, and on the other hand by stronger vertical stratification, which reduces the transport of N2O from the ocean interior to the ocean surface. The higher emissions over the OMZ are linked to an expansion of these zones under global warming, which leads to increased N2O production, associated primarily with denitrification. While there are many uncertainties in the relative contribution and changes in the N2O production pathways, the increasing storage seems unequivocal and determines largely the decrease in N2O emissions in the future. From the perspective of a global climate system, the averaged feedback strength associated with the projected decrease in oceanic N2O emissions amounts to around -0.009 W m-2 K-1, which is comparable to the potential increase from terrestrial N2O sources. However, the assessment for a potential balance between the terrestrial and marine feedbacks calls for an improved representation of N2O production terms in fully coupled next-generation Earth system models.

Reconnaissance 14C Dating and the Evaluation of Mg/Li as a Temperature Proxy in Bamboo Corals from the California Margin

NASA Astrophysics Data System (ADS)

Freiberger, M. M.; LaVigne, M.; Miller, H.; Hill, T. M.; McNichol, A. P.; Lardie Gaylord, M.

2015-12-01

In the face of anthropogenically induced climate changes, it is becoming increasingly important to develop high-resolution paleoceanographic records that may elucidate how ocean conditions may shift in coming decades. Recently, bamboo corals (gorgonian octocorals) have been proposed as archives of intermediate ocean conditions. This study used 'reconnaissance' radiocarbon analysis to identify the nuclear bomb 14C spike in the proteinaceous nodes of bamboo corals and to quantify radial growth rates and ages of corals spanning the eastern Pacific oxygen minimum zone (OMZ) (790-2055 m). Preliminary data suggest that these corals exhibit a wide range of growth rates (9.4-350 μm/yr) that are non-linear over time and decrease with coral age and depth. Records of Mg/Li were investigated in these corals, given that previous studies have demonstrated positive correlations between Mg/Li and temperature in benthic foraminifera and surface and deep-sea aragonitic corals, with a reduced influence of vital effects over Mg/Ca. Intracoral reproducibility observed for replicate Mg/Li timeseries within each sample (p=0.6±0.2, n=6) and strong correlations between Mg/Ca and Li/Ca (0.9±0.1, n=6) indicate similar environmental or biological drivers of Mg and Li incorporation in bamboo corals. Given the strong positive correlations between Mg/Li and water temperature across a depth transect (r2=0.87, n=6), increasing Mg/Li observed over the growth history of each of the corals more likely reflects declining growth rates resulting in decreased Li incorporation over time rather than cooling of California Margin intermediate waters. Reductions in growth rate over the lifespan of each coral (~100+ years) may be a function of natural coral growth patterns or changes in carbonate chemistry, oxygen, or food supply in a sensitive OMZ coral ecosystem.

Dysoxia in the Gulf of Alaska evinced by benthic foraminiferal assemblages and redox-sensitive trace elements during deglacial and glacial intervals

NASA Astrophysics Data System (ADS)

Sharon, S.; Belanger, C. L.; Du, J.; Mix, A. C.; Asahi, H.

2016-12-01

During the last ice age, millennial-scale episodes of expanded low-oxygen conditions occurred around the margins of the North Pacific, however the drivers of these events are not well understood. Differences in the timing of dysoxic events in the shallow and deep Pacific have been proposed, which imply changes in ocean circulation may play a role. Here we combine faunal and geochemical analyses to investigate the timing and severity of low-oxygen events in the North Pacific at a slope (682 m) and a deeper-water (3680 m) site from a transect cored by IODP Expedition 341 in the Gulf of Alaska. At the slope site, multivariate faunal analyses based on the relative abundances of benthic foraminiferal species reveal a distinct fauna characterized by high abundances of taxa associated with dysoxic to suboxic conditions including Buliminella tenuata, Bolivia pacifica, and Epistominella pacifica. These assemblages occur during the most recent deglacial ( 12,000 kyr) and during MIS 3 from 45,000-55,000 years ago. These fossil assemblages have no faunal analog within the modern Gulf of Alaska, although they are most similar to faunas from the modern oxygen minimum zone (OMZ). Thus, these faunas may represent a more intense OMZ. Sedimentary trace element analyses show enrichment in Re, Mo, and U where these faunas are found, supporting them as low-oxygen indicators. Similarly, a distinct fauna occurs at the deeper site, which has high relative abundances of Nonionella sp., Stainforthia fusiformis, and small-bodied taxa common in suboxic settings with high phytodetritus. Ongoing age-model improvements and increased sampling resolution will allow us to better test whether faunal changes are offset at the two sites and assess the abruptness of the onset of extreme low-oxygen events in the North Pacific.

Evaluating the Mn/Ca Ratio of Foraminiferal Calcite Determined by Flow-Through ICP-MS as a Proxy for Terrigenous Input, Upwelling, and Carbon Rain Rate

NASA Astrophysics Data System (ADS)

Klinkhammer, G. P.; Mix, A. C.; Benway, H. M.; Haley, B. A.

2004-12-01

The Mn/Ca ratio of the biogenic calcite preserved in deep-sea sediments has potential as a tracer of terrestrial input, upwelling, and carbon rain rate over geologic time scales. The basis for this potential lies in features of the Mn cycle in the oceans, which are well known. Manganese is a biogeochemically reactive element, but has a lower affinity for dissolved oxygen and organic matter than iron, making it more stable over short time scales, and less affected by speciation. Depth profiles of Mn in oligotrophic ocean waters show a sharp contrast between low concentrations in deep water (0.20 nM) and relatively high concentrations in the mixed layer (2-5 nM). Mn oxides are stable in high oxygen environments but reduced in the suboxic conditions found in the oxygen minimum zone (OMZ). This behavior makes the intermediate water to surface water concentration ratio of Mn sensitive to the intensity of the OMZ, an artifact of the carbon rain rate, and dust/river input. In sediments, suboxic dissolution is balanced by the formation of carbonate making Mn highly reactive during early diagenesis. These features of the Mn cycle in seawater make the Mn/Ca ratio of foraminifera an attractive paleoproxy, but only if the primary signature can be recovered after diagenetic alteration. Recently our laboratory developed a flow-through extraction system that gives us fresh insight into this problem by making it possible to separate mineral phases associated with the foraminiferal fraction by differences in their solubilities. This paper examines foraminiferal Mn/Ca ratios in core tops and down core records from the eastern equatorial Pacific determined with this new technique. We access the potential of flow-through Mn/Ca by comparing its record to those of Mg/Ca and stable isotopes.

A high-resolution sulfur isotope record of the Paleocene-Eocene Thermal Maximum (PETM)

NASA Astrophysics Data System (ADS)

Yao, W.; Paytan, A.; Wortmann, U.

2017-12-01

The Paleocene-Eocene Thermal Maximum (PETM) is a transient episode of extreme global warming lasting 10,000 to 40,000 years, characterized by the significant rise in deep-ocean and equatorial sea-surface temperatures. Our current understanding of the PETM is based on sedimentological evidence (short-term negative excursions of benthic δ13C and δ18O, widespread oceanic carbonate dissolution). Here we add to this body of research by presenting a high-resolution δ34S and δ18OSO4 data of seawater sulfate derived from marine barite (ODP Leg 199 Core 1221C-11X-3). Our results show that during the PETM, the δ34S of seawater sulfate increases from 17.26 permil to 18.31 permil between 55.30 and 55.19 Ma, and quickly returns to values around 17.60 permil at 55.15 Ma. Similarly, the δ18OSO4 value exhibits a positive excursion of 1.7 permil over the same time. The peak of δ18OSO4 appears coincident with the peak of δ34S within the PETM interval (55.21-55.17 Ma). While these numbers appear small, the long residence time of sulfate in the ocean implies rather large fluxes. We show that these changes require the removal of about 1.5e17 mol of 32S through microbial sulfate reduction. The quick return of the δ34S-signal necessitates that the reduced sulfur is stored in a transient reservoir, and released back into the ocean. The magnitude and reversibility of this process render pyrite burial unlikely. Rather, we suggest that large quantities of reduced sulfur are temporarily stored in an expanded oxygen minimum zone (OMZ). Depending on the assumed H2S concentrations, the OMZ must have increased somewhere between 100 and 1000 meters in thickness. The observed sulfate δ18OSO4 is consistent with this interpretation.

[The electron microscopic observation of the effect of monoclonal antibody on the form and structure of mutans streptococci OMZ176].

PubMed

Wen, L; Yue, S

1996-01-01

The effect of monoclonal antibody on the form and structure of Mutans Streptococci OMZ176 was studied. The result showed that a great number of Mutans Streptococci OMZ176 was agglutianated after treating with monoclonal antibody prepared by a cell wall protein antigen (molecular weight 220 kd) of Mutans Streptococci OMZ176. Bacterial cells were swollen obviously. The gap between cell wall and cytoplasmic was widened. The electronic density of cell plasm was greatly decreased.

Particle export fluxes to the oxygen minimum zone of the eastern tropical North Atlantic

NASA Astrophysics Data System (ADS)

Engel, Anja; Wagner, Hannes; Le Moigne, Frédéric A. C.; Wilson, Samuel T.

2017-04-01

In the ocean, sinking of particulate organic matter (POM) drives carbon export from the euphotic zone and supplies nutrition to mesopelagic communities, the feeding and degradation activities of which in turn lead to export flux attenuation. Oxygen (O2) minimum zones (OMZs) with suboxic water layers (< 5 µmol O2 kg-1) show a lower carbon flux attenuation compared to well-oxygenated waters (> 100 µmol O2 kg-1), supposedly due to reduced heterotrophic activity. This study focuses on sinking particle fluxes through hypoxic mesopelagic waters (< 60 µmol O2 kg-1); these represent ˜ 100 times more ocean volume globally compared to suboxic waters, but they have less been studied. Particle export fluxes and attenuation coefficients were determined in the eastern tropical North Atlantic (ETNA) using two surface-tethered drifting sediment trap arrays with seven trapping depths located between 100 and 600 m. Data on particulate matter fluxes were fitted to the normalized power function Fz = F100 (z/100)-b, with F100 being the flux at a depth (z) of 100 m and b being the attenuation coefficient. Higher b values suggest stronger flux attenuation and are influenced by factors such as faster degradation at higher temperatures. In this study, b values of organic carbon fluxes varied between 0.74 and 0.80 and were in the intermediate range of previous reports, but lower than expected from seawater temperatures within the upper 500 m. During this study, highest b values were determined for fluxes of particulate hydrolyzable amino acids (PHAA), followed by particulate organic phosphorus (POP), nitrogen (PN), carbon (POC), chlorophyll a (Chl a) and transparent exopolymer particles (TEP), pointing to a sequential degradation of organic matter components during sinking. Our study suggests that in addition to O2 concentration, organic matter composition co-determines transfer efficiency through the mesopelagic. The magnitude of future carbon export fluxes may therefore also depend on how organic matter quality in the surface ocean changes under influence of warming, acidification and enhanced stratification.

The Peru Margin as an Authigenic Mineral Factory, Evidence From Surface Sediments and Oceanography

NASA Astrophysics Data System (ADS)

Dean, W. E.; Arthur, M. A.

2004-12-01

Characteristics of sediments deposited within an intense oxygen-minimum zone (OMZ) on the Peru continental margin were mapped by submersible, and studied in samples collected in deck-deployed box cores and submersible push cores on two east-west transects over water depths of 75 to 1000 m at 12 degrees and 13.5 degrees S. On the basis of sampling of the top 1-2 cm of available cores, three main belts of sediments were identified in each transect with increasing depth: 1) organic-carbon (OC)-rich muds; 2) authigenic phosphatic mineral crusts; and 3) glaucony facies. These facies patterns are primarily controlled by redox conditions and strength of bottom currents. OC-rich sediments on the 12-degree transect were mainly located on the outer shelf and upper slope (150-350 m), but they occurred in much shallower water (ca. 100 m) on the 13.5-degree transect. The organic matter is almost entirely marine, resulting from very high primary productivity. The OC concentrations are highest (up to 18%) in sediments where intermediate water masses with low dissolved oxygen concentrations (less than 5 micromoles/kg) impinge on the slope at water depths between 75 and 450 m. The region between 175 and 350 m depth is characterized by bedforms stabilized by bacterial mats, extensive authigenic mineral crusts, and (or) thick organic flocs. Currents as high as 30 cm/sec were measured over that depth interval. Current-resuspension of surficial organic matter, activity of organisms, and transport to and from more oxygenated zones contribute to greater oxidation and poorer preservation of organic matter than occur under oxygen-deficient conditions. Phosphate-rich sediments occurred at depths of about 300 to 550 m on both transects. Nodular crusts cemented by carbonate-fluorapatite (CFA; phosphorite) or dolomite form within the OMZ. The crusts start by cementation of sediment near the sediment-water interface forming stiff but friable phosphatizes claystone "protocrusts". The protocrusts evolve into dense, dark phosphorite crusts, cemented breccias, and pavements. The degree of phosphatization and thickness of the phosphorite crusts depends on rates of sediment supply and strength and frequency of currents that re-expose crusts on the seafloor. Glaucony-rich surficial sediments, relatively undiluted by other components, mainly were found in deeper water on the 13.5 degree transect (750 m to at least 1067 m). These sediments consist almost entirely of sand-size glaucony pellets (aggregates of clay minerals with pelletoid shapes). These widespread glaucony sands possibly formed in situ and were then concentrated and reworked by strong currents that winnowed away the fine-grained matrix. Overall, sedimentation rate must be slow in order for the glaucony minerals to remain in contact with seawater, which is the source of cations during growth. The close association of glaucony and phosphorite indicates that there is a delicate balance between slightly oxidizing and slightly reducing conditions at the base of the OMZ- slightly reducing to mobilize iron and phosphate, and slightly oxidizing to form glaucony.

Formation of ferromanganese crusts on northwest intertropical Pacific seamounts: Electron photomicrography and microprobe chemistry

USGS Publications Warehouse

Jeong, K.S.; Jung, H.-S.; Kang, J.-K.; Morgan, C.L.; Hein, J.R.

2000-01-01

Seven ferromanganese crusts from the northwest intertropical Pacific seamounts were analyzed for photomicroscopic growth structures, microprobe chemistry, and ages based on Co-chronometer growth rate. The crusts on the Marshall Islands seamounts are thick and ale divided into phosphatized lower older and nonphosphatized upper younger growth generations: the older crust consists of compact laminations and columns impregnated with carbonate fluoapatite (CFA), whereas the younger crust is characterized by porous botryoids and columns of ??-MnO2 and Fe oxyhydroxide. The crusts on the Federated States of Micronesia (FSM) and Palau Islands seamounts are thin and are often incorporated with inorganic opal-A in the uppermost part, comprising the younger generation. Some crusts show scours and fractures. Although the growth of crusts has been often interrupted by mass failure of slope sediments, the crusts on the Marshall Islands seamounts are estimated to have grown at rate of about 3 mm/Ma since the middle Eocene and to have been phosphatized in the late Oligocene during the host seamounts were located beneath the equatorial zone of high productivity. Prolonged infiltration of the oxygen minimum zone (OMZ) water into shallower water older crusts redistributed crust composition by precipitating CFA, enriching subsequent amounts of Mn and Ni, and removing some Co. The younger crust has formed at slower rate (about 2 mm/Ma) under the stronger influence of bottom-water circulation in the north of the equatorial zone, concentrating abundant Co. In the uppermost part of some crusts, siliceous skeletons transform with burial to inorganic opal-A and Si-rich Fe oxyhydroxide, suggesting that biosilica diagenesis can enhance crust growth. (C) 2000 Elsevier Science B.V.

Synthesis, physicochemical characterization, DFT calculation and biological activities of Fe(III) and Co(II)-omeprazole complexes. Potential application in the Helicobacter pylori eradication

NASA Astrophysics Data System (ADS)

Russo, Marcos G.; Vega Hissi, Esteban G.; Rizzi, Alberto C.; Brondino, Carlos D.; Salinas Ibañez, Ángel G.; Vega, Alba E.; Silva, Humberto J.; Mercader, Roberto; Narda, Griselda E.

2014-03-01

The reaction between the antiulcer agent omeprazole (OMZ) with Fe(III) and Co(II) ions was studied, observing a high ability to form metal complexes. The isolated microcrystalline solid complexes were characterized by elemental analysis, X-ray powder diffraction (XRPD), Scanning Electron Microscopy (SEM), magnetic measurements, thermal study, FTIR, UV-Visible, Mössbauer, electronic paramagnetic resonance (EPR), and DFT calculations. The metal-ligand ratio for both complexes was 1:2 determined by elemental and thermal analysis. FTIR spectroscopy showed that OMZ acts as a neutral bidentate ligand through the pyridinic nitrogen of the benzimidazole ring and the oxygen atom of the sulfoxide group, forming a five-membered ring chelate. Electronic, Mössbauer, and EPR spectra together with magnetic measurements indicate a distorted octahedral geometry around the metal ions, where the coordination sphere is completed by two water molecules. SEM and XRPD were used to characterize the morphology and the crystal nature of the complexes. The most favorable conformation for the Fe(III)-OMZ and Co(II)-OMZ complexes was obtained by DFT calculations by using B3LYP/6-31G(d)&LanL2DZ//B3LYP/3-21G(d)&LanL2DZ basis set. Studies of solubility along with the antibacterial activity against Helicobacter pylori for OMZ and its Co(II) and Fe(III) complexes are also reported. Free OMZ and both metal complexes showed antibacterial activity against H. pylori. Co(II)-OMZ presented a minimal inhibitory concentration ˜32 times lower than that of OMZ and ˜65 lower than Fe(III)-OMZ, revealing its promising potential use for the treatment of gastric pathologies associated with the Gram negative bacteria. The morphological changes observed in the cell membrane of the bacteria after the incubation with the metal-complexes were also analyzed by SEM microscopy. The antimicrobial activity of the complexes was proved by the viability test.

Plankton Production Biology

DTIC Science & Technology

2010-09-30

which are not yet in data centers. I enjoy the trust of Indian colleagues, so observations from inside the Indian Exclusive Economic Zone are...where O2 is ≤ 0.1 mL L-1 (~ 4 µM) over about 10˚ of latitude. The geochemical significance of OMZs is the reduction of nitrate from the perpetual...scenario, the O2 remaining would vanish in days, while the removal of nitrate is likely to take several weeks. The H2S is first observed inshore rather

Size really does matter: effects of filter fractionation on microbial community structure in a model oxygen minimum zone.

NASA Astrophysics Data System (ADS)

Torres Beltran, M.

2016-02-01

The Scientific Committee on Oceanographic Research (SCOR) Working Group 144 "Microbial Community Responses to Ocean Deoxygenation" workshop held in Vancouver, British Columbia in July 2014 had the primary objective of kick-starting the establishment of a minimal core of technologies, techniques and standard operating procedures (SOPs) to enable compatible process rate and multi-molecular data (DNA, RNA and protein) collection in marine oxygen minimum zones (OMZs) and other oxygen starved waters. Experimental activities conducted in Saanich Inlet, a seasonally anoxic fjord on Vancouver Island British Columbia, were designed to compare and cross-calibrate in situ sampling devices (McLane PPS system) with conventional bottle sampling and incubation methods. Bottle effects on microbial community composition, and activity were tested using different filter combinations and sample volumes to compare PPS/IPS (0.4 µm) versus Sterivex (0.22 µm) filtration methods with and without prefilters (2.7 µm). Resulting biomass was processed for small subunit ribosomal RNA gene sequencing across all three domains of life on the 454 platform followed by downstream community structure analyses. Significant community shifts occurred within and between filter fractions for in situ versus on-ship processed samples. For instance, the relative abundance of several bacterial phyla including Bacteroidetes, Delta and Gammaproteobacteria decreased five-fold on-ship when compared to in situ filtration. Similarly, experimental mesocosms showed similar community structure and activity to in situ filtered samples indicating the need to cross-calibrate incubations to constrain bottle effects. In addition, alpha and beta diversity significantly changed as function of filter size and volume, as well as the operational taxonomic units identified using indicator species analysis for each filter size. Our results provide statistical support that microbial community structure is systematically biased by filter fraction methods and highlight the need for establishing compatible techniques among researchers that facilitate comparative and reproducible science for the whole community.

Oxidative stress in deep scattering layers: Heat shock response and antioxidant enzymes activities of myctophid fishes thriving in oxygen minimum zones

NASA Astrophysics Data System (ADS)

Lopes, Ana Rita; Trübenbach, Katja; Teixeira, Tatiana; Lopes, Vanessa M.; Pires, Vanessa; Baptista, Miguel; Repolho, Tiago; Calado, Ricardo; Diniz, Mário; Rosa, Rui

2013-12-01

Diel vertical migrators, such as myctophid fishes, are known to encounter oxygen minimum zones (OMZ) during daytime in the Eastern Pacific Ocean and, therefore, have to cope with temperature and oxidative stress that arise while ascending to warmer, normoxic surface waters at night-time. The aim of this study was to investigate the antioxidant defense strategies and heat shock response (HSR) in two myctophid species, namely Triphoturus mexicanus and Benthosema panamense, at shallow and warm surface waters (21 kPa, 20-25 °C) and at hypoxic, cold (≤1 kPa, 10 °C) mesopelagic depths. More specifically, we quantified (i) heat shock protein concentrations (HSP70/HSC70) (ii) antioxidant enzyme activities [including superoxide dismutase (SOD), catalase (CAT) and glutathione-S-transferase (GST)], and (iii) lipid peroxidation [malondialdehyde (MDA) levels]. HSP70/HSC70 levels increased in both myctophid species at warmer, well-oxygenated surface waters probably to prevent cellular damage (oxidative stress) due to increased oxygen demand under elevated temperatures and reactive oxygen species (ROS) formation. On the other hand, CAT and GST activities were augmented under hypoxic conditions, probably as preparatory response to a burst of oxyradicals during the reoxygenation phase (while ascending). SOD activity decreased under hypoxia in B. panamense, but was kept unchanged in T. mexicanus. MDA levels in B. panamense did not change between the surface and deep-sea conditions, whereas T. mexicanus showed elevated MDA and HSP70/HSC70 concentrations at warmer surface waters. This indicated that T. mexicanus seems to be not so well tuned to temperature and oxidative stress associated to diel vertical migrations. The understanding of such physiological strategies that are linked to oxygen deprivation and reoxygenation phases may provide valuable information about how different species might respond to the impacts of environmental stressors (e.g. expanding mesopelagic hypoxia) coupled with global climate change.

Oceanographic controls on sedimentary and geochemical facies on the Peru outer shelf and upper slope

USGS Publications Warehouse

Arthur, Michael A.; Dean, Walter E.

2013-01-01

Concentrations and characteristics of organic matter in surface sediments deposited under an intense oxygen-minimum zone (OMZ) on the Peru margin were mapped and studied in samples from deck-deployed box cores and push cores acquired by submersible on two east-west transects spanning depths of 75 to 1,000 meters (m) at 12°S and 13.5°S. On the basis of sampling and analyses of the top 1–2 centimeters (cm) of available cores, three main belts of sediments were identified on each transect with increasing depth: (1) muds rich in organic carbon (OC); (2) authigenic phosphatic mineral crusts and pavements; and (3) glaucony facies.Sediments rich in OC on the 12°S transect were mainly located on the outer shelf and upper slope (150–350 m), but they occurred in much shallower water (approximately 100 m) on the 13.5°S transect. The organic matter is almost entirely marine as confirmed by Rock-Eval pyrolysis and isotopic composition of OC. Concentrations of OC are highest (up to 18 percent) in sediments within the OMZ where dissolved oxygen (DO) concentrations are <5 micromoles per kilogram (μM). Even at these low concentrations of DO, however, the surface sediments from within the OMZ are dominantly unlaminated. Concentrations of DO may have the dominant effect on organic matter characteristics, but reworking of fine-grained sediment and organic matter by strong bottom currents with velocities as high as 30 centimeters per second (cm/s) on the slope between 150 and 300 m and redeposition on the seafloor in areas of lower energy and higher DO concentration also exert important controls on OC concentration and degree of oxidation in this region.Phosphate-rich sediments and crusts occurred at depths of about 300 to 550 m on both transects. Nodular crusts of sediment cemented by carbonate-fluorapatite (CFA; phosphorite) or dolomite form within the OMZ. These phosphorite crusts evolve through cementation from light olive-green, stiff but friable, phosphatized claystone “protocrusts” through dense, dark phosphorite crusts, cemented breccias, and pavements. The degree of phosphatization and thickness of the crusts depend on the rates of sediment supply and on the strength and frequency of currents that re-expose crusts on the seafloor. Phosphorite crusts and pavements on the Peru margin can only become buried and incorporated into the geologic record once bottom currents slacken sufficiently to allow fine-grained sediment to accumulate.Glaucony-rich surface sediments, relatively undiluted by other components, were found mainly in deeper water on the 13.5°S transect (750 m to at least 1,067 m). These sediments consist almost entirely of sand-size glaucony pellets. These widespread glaucony sands formed in place and were then concentrated and reworked by strong currents that winnowed away the fine-grained matrix. Although the glaucony occurs in sand-size pellets, the pellets are made up of aggregates of authigenic, platy, micaceous clay minerals. Glaucony is predominantly a potassium (K), sodium (Na), iron (Fe), magnesium (Mg) aluminosilicate with an approximate formula of (K,Na)(Fe3+,Al,Mg)2(Si,Al)4O10(OH)2. The glaucony on the 13.5°S transect forms by alteration of one or more original “framework” minerals (carbonate and [or] aluminosilicates) to form pellital aggregates of Fe-, K-, and Mg-rich clay minerals. Because Fe, K, and Mg are derived from seawater, sedimentation rates must be extremely slow in order for the original framework minerals to remain in contact with seawater. The close association of glaucony and phosphorite indicates a delicate balance between the slightly oxidizing conditions at the base of the OMZ that form glaucony and the slightly reducing conditions that mobilize iron and phosphate to form phosphorite.

Macrofaunal colonization across the Indian margin oxygen minimum zone

NASA Astrophysics Data System (ADS)

Levin, L. A.; McGregor, A. L.; Mendoza, G. F.; Woulds, C.; Cross, P.; Witte, U.; Gooday, A. J.; Cowie, G.; Kitazato, H.

2013-11-01

There is a growing need to understand the ability of bathyal assemblages to recover from disturbance and oxygen stress, as human activities and expanding oxygen minimum zones increasingly affect deep continental margins. The effects of a pronounced oxygen minimum zone (OMZ) on slope benthic community structure have been studied on every major upwelling margin; however, little is known about the dynamics or resilience of these benthic populations. To examine the influence of oxygen and phytodetritus on short-term settlement patterns, we conducted colonization experiments at 3 depths on the West Indian continental margin. Four colonization trays were deployed at each depth for 4 days at 542 and 802 m (transect 1-16°58' N) and for 9 days at 817 and 1147 m (transect 2-17°31' N). Oxygen concentrations ranged from 0.9 μM (0.02 mL L-1) at 542 m to 22 μM (0.5 mL L-1) at 1147 m. All trays contained local defaunated sediments; half of the trays at each depth also contained 13C/15N-labeled phytodetritus mixed into the sediments. Sediment cores were collected between 535 m and 1140 m from 2 cross-margin transects for analysis of ambient (source) macrofaunal (>300 μm) densities and composition. Ambient macrofaunal densities ranged from 0 ind m-2 (at 535-542 m) to 7400 ind m-2, with maximum values on both transects at 700-800 m. Macrofaunal colonizer densities ranged from 0 ind m-2 at 542 m, where oxygen was lowest, to average values of 142 ind m-2 at 800 m, and 3074 ind m-2 at 1147 m, where oxygen concentration was highest. These were equal to 4.3 and 151% of the ambient community at 800 m and 1147 m, respectively. Community structure of settlers showed no response to the presence of phytodetritus. Increasing depth and oxygen concentration, however, significantly influenced the community composition and abundance of colonizing macrofauna. Polychaetes constituted 92.4% of the total colonizers, followed by crustaceans (4.2%), mollusks (2.5%), and echinoderms (0.8%). The majority of colonizers were found at 1147 m; 88.5% of these were Capitella sp., although they were rare in the ambient community. Colonists at 800 and 1147 m also included ampharetid, spionid, syllid, lumbrinerid, cirratulid, cossurid and sabellid polychaetes. Consumption of 13C/15N-labeled phytodetritus was observed for macrofaunal foraminifera (too large to be colonizers) at the 542 and 802/817 m sites, and by metazoan macrofauna mainly at the deepest, better oxygenated sites. Calcareous foraminifera (Uvigerina, Hoeglundina sp.), capitellid polychaetes and cumaceans were among the major phytodetritus consumers. These preliminary experiments suggest that bottom-water oxygen concentrations may strongly influence ecosystem services on continental margins, as reflected in rates of colonization by benthos and colonizer processing of carbon following disturbance. They may also provide a window into future patterns of settlement on the continental slope as the world's oxygen minimum zones expand.

Some Immunochemical Properties of Dextransucrase and Invertase from Streptococcus mutans

PubMed Central

Fukui, Kazuhiro; Fukui, Yoshio; Moriyama, Takafumi

1974-01-01

Dextransucrase and invertase of some strains of Streptococcus mutans were examined by immunodiffusion with antisera against enzymes purified from strain HS-6 (Bratthall's serotype a). Both antisera cross-reacted with crude enzyme preparations from the other serotype a (strains HS-1 and AHT) and d organisms (strains KIR, OMZ176, and OMZ65) but not with those from serotype b (strains FA-1 and BHT) or c organisms (strains GS-5, Ingbritt, and NCTC 10449). Based upon the antiserum used, the orders of antigenic similarity of the cross-reacting enzymes to the HS-6 enzymes were HS-6 > HS-1 > AHT = KIR = OMZ176 = OMZ65 for dextransucrase and HS-6 = HS-1 > AHT = KIR = OMZ176 = OMZ65 for invertase. It was found that the enzymes from serotype a organisms were not always antigenically homogeneous, as seen between strains HS-6, HS-1, or AHT for dextransucrase, and between the HS group and strain AHT for invertase. Antiserum against the HS-6 dextransucrase markedly inhibited the heterologous dextransucrases of serotype a organisms with the exception of strain HS-1 and d organisms, with or without the addition of dextran. Images PMID:16558114

Coastal sources, sinks and strong organic complexation of dissolved cobalt within the US North Atlantic GEOTRACES transect GA03

NASA Astrophysics Data System (ADS)

Noble, Abigail E.; Ohnemus, Daniel C.; Hawco, Nicholas J.; Lam, Phoebe J.; Saito, Mak A.

2017-06-01

Cobalt is the scarcest of metallic micronutrients and displays a complex biogeochemical cycle. This study examines the distribution, chemical speciation, and biogeochemistry of dissolved cobalt during the US North Atlantic GEOTRACES transect expeditions (GA03/3_e), which took place in the fall of 2010 and 2011. Two major subsurface sources of cobalt to the North Atlantic were identified. The more prominent of the two was a large plume of cobalt emanating from the African coast off the eastern tropical North Atlantic coincident with the oxygen minimum zone (OMZ) likely due to reductive dissolution, biouptake and remineralization, and aeolian dust deposition. The occurrence of this plume in an OMZ with oxygen above suboxic levels implies a high threshold for persistence of dissolved cobalt plumes. The other major subsurface source came from Upper Labrador Seawater, which may carry high cobalt concentrations due to the interaction of this water mass with resuspended sediment at the western margin or from transport further upstream. Minor sources of cobalt came from dust, coastal surface waters and hydrothermal systems along the Mid-Atlantic Ridge. The full depth section of cobalt chemical speciation revealed near-complete complexation in surface waters, even within regions of high dust deposition. However, labile cobalt observed below the euphotic zone demonstrated that strong cobalt-binding ligands were not present in excess of the total cobalt concentration there, implying that mesopelagic labile cobalt was sourced from the remineralization of sinking organic matter. In the upper water column, correlations were observed between total cobalt and phosphate, and between labile cobalt and phosphate, demonstrating a strong biological influence on cobalt cycling. Along the western margin off the North American coast, this correlation with phosphate was no longer observed and instead a relationship between cobalt and salinity was observed, reflecting the importance of coastal input processes on cobalt distributions. In deep waters, both total and labile cobalt concentrations were lower than in intermediate depth waters, demonstrating that scavenging may remove labile cobalt from the water column. Total and labile cobalt distributions were also compared to a previously published South Atlantic GEOTRACES-compliant zonal transect (CoFeMUG, GAc01) to discern regional biogeochemical differences. Together, these Atlantic sectional studies highlight the dynamic ecological stoichiometry of total and labile cobalt. As increasing anthropogenic use and subsequent release of cobalt poses the potential to overpower natural cobalt signals in the oceans, it is more important than ever to establish a baseline understanding of cobalt distributions in the ocean.

Reduction of the Powerful Greenhouse Gas N2O in the South-Eastern Indian Ocean.

PubMed

Raes, Eric J; Bodrossy, Levente; Van de Kamp, Jodie; Holmes, Bronwyn; Hardman-Mountford, Nick; Thompson, Peter A; McInnes, Allison S; Waite, Anya M

2016-01-01

Nitrous oxide (N2O) is a powerful greenhouse gas and a key catalyst of stratospheric ozone depletion. Yet, little data exist about the sink and source terms of the production and reduction of N2O outside the well-known oxygen minimum zones (OMZ). Here we show the presence of functional marker genes for the reduction of N2O in the last step of the denitrification process (nitrous oxide reductase genes; nosZ) in oxygenated surface waters (180-250 O2 μmol.kg(-1)) in the south-eastern Indian Ocean. Overall copy numbers indicated that nosZ genes represented a significant proportion of the microbial community, which is unexpected in these oxygenated waters. Our data show strong temperature sensitivity for nosZ genes and reaction rates along a vast latitudinal gradient (32°S-12°S). These data suggest a large N2O sink in the warmer Tropical waters of the south-eastern Indian Ocean. Clone sequencing from PCR products revealed that most denitrification genes belonged to Rhodobacteraceae. Our work highlights the need to investigate the feedback and tight linkages between nitrification and denitrification (both sources of N2O, but the latter also a source of bioavailable N losses) in the understudied yet strategic Indian Ocean and other oligotrophic systems.

The trophic and metabolic pathways of foraminifera in the Arabian Sea: evidence from cellular stable isotopes

NASA Astrophysics Data System (ADS)

Jeffreys, R. M.; Fisher, E. H.; Gooday, A. J.; Larkin, K. E.; Wolff, G. A.; Billett, D. S. M.

2014-12-01

The Arabian Sea is a region of elevated productivity with the highest globally recorded fluxes of particulate organic matter (POM) to the deep ocean, providing an abundant food source for fauna at the seafloor. However, benthic communities are also strongly influenced by an intense oxygen minimum zone (OMZ), which impinges on the continental slope at bathyal depths. We compared the trophic ecology of foraminifera on the Oman and Pakistan margins of the Arabian Sea (140-3185 m water depth). Organic carbon concentrations of surficial sediments were higher on the Oman margin (3.32 ± 1.4%) compared to the Pakistan margin (2.45 ± 1.1%) and sedimentary organic matter (SOM) quality estimated from the Hydrogen Index was also higher on the Oman margin (300-400 mg HC (mg TOC)-1) compared to the Pakistan margin (<250 mg HC (mg TOC)-1). δ13C and δ15N values of sediments were similar on both margins (-20 and 8‰, respectively). Stable isotope analysis (SIA) showed that foraminiferal cells had a wide range of δ13C values (-25.5 to -11.5‰), implying that they utilise multiple food sources; indeed δ13C values varied between depths, foraminiferal types and between the two margins. Foraminifera had broad ranges in δ15N values (-7.8 to 27.3‰). The enriched values suggest that some species may store nitrate to utilise in respiration; this was most notable on the Pakistan margin. Depleted foraminiferal δ15N values were identified on both margins, particularly the Oman margin, and may reflect feeding on chemosynthetic bacteria. We suggest that differences in productivity regimes between the two margins may be responsible for the differences observed in foraminiferal isotopic composition. In addition, at the time of sampling, whole jellyfish carcasses (Crambionella orsini) and a carpet of jelly detritus were observed across the Oman margin transect. Associated chemosynthetic bacteria may have provided an organic-rich food source for foraminifera at these sites. Our data suggest that foraminifera in OMZ settings can utilise a variety of food sources and metabolic pathways to meet their energetic demands.

Denitrification across landscapes and waterscapes: A synthesis

USGS Publications Warehouse

Seitzinger, S.; Harrison, J.A.; Böhlke, J.K.; Bouwman, A.F.; Lowrance, R.; Peterson, B.; Tobias, C.; Van Drecht, G.

2006-01-01

Denitrification is a critical process regulating the removal of bioavailable nitrogen (N) from natural and human-altered systems. While it has been extensively studied in terrestrial, freshwater, and marine systems, there has been limited communication among denitrification scientists working in these individual systems. Here, we compare rates of denitrification and controlling factors across a range of ecosystem types. We suggest that terrestrial, freshwater, and marine systems in which denitrification occurs can be organized along a continuum ranging from (1) those in which nitrification and denitrification are tightly coupled in space and time to (2) those in which nitrate production and denitrification are relatively decoupled.In aquatic ecosystems, N inputs influence denitrification rates whereas hydrology and geomorphology influence the proportion of N inputs that are denitrified. Relationships between denitrification and water residence time and N load are remarkably similar across lakes, river reaches, estuaries, and continental shelves.Spatially distributed global models of denitrification suggest that continental shelf sediments account for the largest portion (44%) of total global denitrification, followed by terrestrial soils (22%) and oceanic oxygen minimum zones (OMZs; 14%). Freshwater systems (groundwater, lakes, rivers) account for about 20% and estuaries 1% of total global denitrification. Denitrification of land-based N sources is distributed somewhat differently. Within watersheds, the amount of land-based N denitrified is generally highest in terrestrial soils, with progressively smaller amounts denitrified in groundwater, rivers, lakes and reservoirs, and estuaries. A number of regional exceptions to this general trend of decreasing denitrification in a downstream direction exist, including significant denitrification in continental shelves of N from terrestrial sources. Though terrestrial soils and groundwater are responsible for much denitrification at the watershed scale, per-area denitrification rates in soils and groundwater (kg N·km−2·yr−1) are, on average, approximately one-tenth the per-area rates of denitrification in lakes, rivers, estuaries, continental shelves, or OMZs. A number of potential approaches to increase denitrification on the landscape, and thus decrease N export to sensitive coastal systems exist. However, these have not generally been widely tested for their effectiveness at scales required to significantly reduce N export at the whole watershed scale.

Revisiting nitrification in the Eastern Tropical South Pacific: A focus on controls

NASA Astrophysics Data System (ADS)

Peng, Xuefeng; Fuchsman, Clara A.; Jayakumar, Amal; Warner, Mark J.; Devol, Allan H.; Ward, Bess B.

2016-03-01

Nitrification, the oxidation of ammonium (NH4+) to nitrite (NO2-) and to nitrate (NO3-), is a component of the nitrogen (N) cycle internal to the fixed N pool. In oxygen minimum zones (OMZs), which are hotspots for oceanic fixed N loss, nitrification plays a key role because it directly supplies substrates for denitrification and anaerobic ammonia oxidation (anammox), and may compete for substrates with these same processes. However, the control of oxygen and substrate concentrations on nitrification are not well understood. We performed onboard incubations with 15N-labeled substrates to measure rates of NH4+ and NO2- oxidation in the eastern tropical South Pacific (ETSP). The spatial and depth distributions of NH4+ and NO2- oxidation rates were primarily controlled by NH4+ and NO2- availability, oxygen concentration, and light. In the euphotic zone, nitrification was partially photoinhibited. In the anoxic layer, NH4+ oxidation was negligible or below detection, but high rates of NO2- oxidation were observed. NH4+ oxidation displayed extremely high affinity for both NH4+ and oxygen. The positive linear correlations between NH4+ oxidation rates and in situ NH4+ concentrations and ammonia monooxygenase subunit A (amoA) gene abundances in the upper oxycline indicate that the natural assemblage of ammonia oxidizers responds to in situNH4+ concentrations or supply by adjusting their population size, which determines the NH4+ oxidation potential. The depth distribution of archaeal and bacterial amoA gene abundances and N2O concentration, along with independently reported simultaneous direct N2O production rate measurements, suggests that AOA were predominantly responsible for NH4+ oxidation, which was a major source of N2O production at oxygen concentrations > 5 µM.

Cytochrome cd1-containing nitrite reductase encoding gene nirS as a new functional biomarker for detection of anaerobic ammonium oxidizing (Anammox) bacteria.

PubMed

Li, Meng; Ford, Tim; Li, Xiaoyan; Gu, Ji-Dong

2011-04-15

A newly designed primer set (AnnirS), together with a previously published primer set (ScnirS), was used to detect anammox bacterial nirS genes from sediments collected from three marine environments. Phylogenetic analysis demonstrated that all retrieved sequences were clearly different from typical denitrifiers' nirS, but do group together with the known anammox bacterial nirS. Sequences targeted by ScnirS are closely related to Scalindua nirS genes recovered from the Peruvian oxygen minimum zone (OMZ), whereas sequences targeted by AnnirS are more closely affiliated with the nirS of Candidatus 'Kuenenia stuttgartiensis' and even form a new phylogenetic nirS clade, which might be related to other genera of the anammox bacteria. Analysis demonstrated that retrieved sequences had higher sequence identities (>60%) with known anammox bacterial nirS genes than with denitrifiers' nirS, on both nucleotide and amino acid levels. Compared to the 16S rRNA and hydrazine oxidoreductase (hzo) genes, the anammox bacterial nirS not only showed consistent phylogenetic relationships but also demonstrated more reliable quantification of anammox bacteria because of the single copy of the nirS gene in the anammox bacterial genome and the specificity of PCR primers for different genera of anammox bacteria, thus providing a suitable functional biomarker for investigation of anammox bacteria.

The cycling of iron, zinc and cadmium in the North East Pacific Ocean - Insights from stable isotopes

NASA Astrophysics Data System (ADS)

Conway, Tim M.; John, Seth G.

2015-09-01

Dissolved stable isotope ratios of the transition metals provide useful information, both for understanding the cycling of these bioactive trace elements through the oceans, and tracing their marine sources and sinks. Here, we present seawater dissolved Fe, Zn and Cd concentration and stable isotope ratio (δ56Fe, δ66Zn, and δ114Cd) profiles from two stations in the Pacific Ocean, the SAFe Station (30°N 140°W) in the subtropical North East Pacific from the GEOTRACES IC2 cruise, and the marginal San Pedro Basin (33.8°N 118.4°W) within the South California Bight. These data represent, to our knowledge, the first full-water column profiles for δ66Zn and δ56Fe from the open-ocean North Pacific, and the first observations of dissolved δ66Zn and δ114Cd in a low-oxygen marginal basin. At the SAFe station, δ56Fe is isotopically lighter throughout the water column (-0.6 to +0.1‰, relative to IRRM-014) compared to the North Atlantic, suggesting significant differences in Fe sources or Fe cycling between these two ocean basins. A broad minimum in δ56Fe associated with the North Pacific oxygen minimum zone (OMZ; <75 μmol kg-1 dissolved oxygen; ∼550-2000 m depth) is consistent with reductive sediments along the California margin being an important source of dissolved Fe to the North Pacific. Other processes which may influence δ56Fe at SAFe include biological cycling in the upper ocean, and input of Fe from hydrothermal vents and oxic sediments below the OMZ. Zn and Cd concentration profiles at both stations broadly match the distribution of the macronutrients silicate and phosphate, respectively. At SAFe, δ114Cd increases towards the surface, reflecting the biological preference for assimilation of lighter Cd isotopes, while negative Cd∗ (-0.12) associated with low oxygen waters supports the recently proposed hypothesis of water-column CdS precipitation. In contrast to δ114Cd, δ66Zn at SAFe decreases towards the surface ocean, perhaps due to scavenging of isotopically heavy Zn, while at intermediate depths δ66Zn provides further evidence of a mid-depth dissolved δ66Zn maximum. We suggest this may be a global feature of Zn biogeochemistry related to either regeneration of heavy adsorbed Zn, or to ZnS formation and removal within the water column. Data from San Pedro shows that anoxic sediments can be a source of isotopically light Zn to the water column (δ66Zn of ∼-0.3‰ relative to JMC Lyon), though evidence of this signal is not observed being transported to SAFe. Within North Pacific Intermediate Water at SAFe (NPIW; ∼500 m) elevated Cd∗ and Zn∗ and a focused minimum in δ56Fe suggest possible transport of Fe, Zn, and Cd over thousands of km from subpolar waters, meaning that NPIW may have a strong influence on the subsurface distribution of trace metals throughout the North Pacific.

Detailed seamount-scale studies of ferromanganese crusts reveal new insights into their formation and resource assessment.

NASA Astrophysics Data System (ADS)

Murton, B. J.; Lusty, P.; Yeo, I. A.; Howarth, S.

2017-12-01

The seafloor hosts abundant mineral deposits critical for low-carbon economies and emerging technologies. These include ferromanganese crusts (FeMnC) that grow on seamounts. While the broad distribution of FeMnC is known, local controls on growth, composition and formation are not. Here, we describe a detailed study of a gyot in the NE Atlantic (Tropic Seamount) that explores the controls, from the surface to the seafloor, exerted on FeMnC growth from current energy, surface productivity, sediment distribution, seafloor morphology, substrate lithology, sediments mobility and thickness, and seamount subsidence. During cruise JC142 (2016), we mapped the seamount with EM120 multibeam, mapped the 400km2 summit with AUV multibeam, sidescan sonar, sub-bottom profiler and 361,644 photographs. During 28 ROV dives we drilled 58 core and collected 344 individual rock samples. We found FeMnC at all depths, with the thickest (<20cm) located at the greatest depths (3000-4000m). The thinnest are on the summit plateau, with the centre and southern edge having the thickest sediment. FeMnC pavements form many different terraces on the summit. Frequent undercuts expose a calcareous substrate. Elsewhere, cobbles and pebbles form the nucleolus for crusts up to 10cm thick, with growth into the sediment. Many substrates are found to comprise semi-consolidated sediment. The presence of thick crusts at the base of the seamount contradicts accepted understanding of FeMnC deposition just below the oxygen minimum zone (OMZ). In areas on the eastern and western spurs, between 2500m and 1000m, where current energy is greatest, sessile fauna are most abundant. Dense coral debris at these locations appears to inhibit crust formation and coral and sponge `gardens' are frequent on near vertical cliffs. The observation that crusts have grown downwards into and over soft sediment is enigmatic since present understanding requires hard substrates to be exposed to seawater for crusts to grow, and any burial would inhibit such growth. Plume tracking shows reduction to background within 1000m. Our study challenges the view that ferromanganese crusts form at the base of the OMZ and grow upwards on solid substrates. Instead, we see an interplay between crust precipitation, the morphological evolution of the seamount, its hydrography and substrates.

Geochemistry of Peruvian near-surface sediments

NASA Astrophysics Data System (ADS)

Böning, Philipp; Brumsack, Hans-Jürgen; Böttcher, Michael E.; Schnetger, Bernhard; Kriete, Cornelia; Kallmeyer, Jens; Borchers, Sven Lars

2004-11-01

Sixteen short sediment cores were recovered from the upper edge (UEO), within (WO) and below (BO) the oxygen minimum zone (OMZ) off Peru during cruise 147 of R/V Sonne. Solids were analyzed for major/trace elements, total organic carbon, total inorganic carbon, total sulfur, the stable sulfur isotope composition (δ 34S) of pyrite, and sulfate reduction rates (SRR). Pore waters were analyzed for dissolved sulfate/sulfide and δ 34S of sulfate. In all cores highest SRR were observed in the top 5 cm where pore water sulfate concentrations varied little due to resupply of sulfate by sulfide oxidation and/or diffusion of sulfate from bottom water. δ 34S of dissolved sulfate showed only minor downcore increases. Strong 32S enrichments in sedimentary pyrite (to -48‰ vs. V-CDT) are due to processes in the oxidative part of the sulfur cycle in addition to sulfate reduction. Manganese and Co are significantly depleted in Peruvian upwelling sediments most likely due to mobilization from particles settling through the OMZ, whereas release of both elements from reducing sediments only seems to occur in near-coastal sites. Cadmium, Mo and Re are exceptionally enriched in WO sediments (<600 m water depth). High Re and moderate Cd and Mo enrichments are seen in BO sediments (>600 m water depth). Re/Mo ratios indicate anoxic and suboxic conditions for WO and BO sediments, respectively. Cadmium and Mo downcore profiles suggest considerable contribution to UEO/WO sediments by a biodetrital phase, whereas Re presumably accumulates via diffusion across the sediment-water interface to precipitation depth. Uranium is distinctly enriched in WO sediments (due to sulfidic conditions) and in some BO sediments (due to phosphorites). Silver transfer to suboxic BO sediments is likely governed by diatomaceous matter input, whereas in anoxic WO sediments Ag is presumably trapped due to sulfide precipitation. Cadmium, Cu, Zn, Ni, Cr, Ag, and T1 predominantly accumulate via biogenic pre-concentration in plankton remains. Rhenium, Sb, As, V, U and Mo are enriched in accordance with seawater TE availability. Lead and Bi enrichment in UEO surface sediments is likely contributed by anthropogenic activity (mining). Accumulation rates of TOC, Cd, Mo, U, and V from Peruvian and Namibian sediments exceed those from the Oman Margin and Gulf of California due to enhanced preservation off Peru and Namibia.

A rapid Fourier transform infrared spectroscopic method for analysis of certain proton pump inhibitors in binary and ternary mixtures

NASA Astrophysics Data System (ADS)

Khashaba, Pakinaz Y.; Ali, Hassan Refat H.; El-Wekil, Mohamed M.

2018-02-01

A simple and non-destructive FTIR method was used to determine certain proton pump inhibitors (PPIs) in binary and ternary mixtures. Proton pump inhibitors (PPIs); omeprazole (OMZ), esomeprazole (EZM), lansoprazole (LAN), pantoprazole sodium (PAN sodium) and rabeprazole sodium (RAB sodium) in binary mixture with domperidone (DOM) and ternary mixture of OMZ, clarithromycin (CLM) and tinidazole (TNZ) were determined in the solid-state by FTIR spectroscopy for the first time. The method was validated according to ICH-guidelines where linearity was ranged from 20 to 850 μg/g and 20-360 μg/g for PPIs and DOM, respectively in binary mixtures and 10-400, 100-8000 and 150-14,000 μg/g for OMZ, CLM and TNZ, respectively. Limits of detection were found to be 6-100 and 9-100 μg/g for PPIs and DOM, respectively and 4, 40 and 50 μg/g for OMZ, CLM and TNZ, respectively. The method was applied successfully for determination of the cited drugs in their respective pharmaceutical dosage forms.

Physiological compensation for environmental acidification is limited in the deep-sea urchin Strongylocentrotus fragilis

NASA Astrophysics Data System (ADS)

Taylor, J. R.; Lovera, C.; Whaling, P. J.; Buck, K. R.; Pane, E. F.; Barry, J. P.

2013-05-01

Anthropogenic CO2 is now reaching depths over 1000 m in the Eastern Pacific, overlapping the Oxygen Minimum Zone (OMZ). Deep-sea animals - particularly, calcifiers - are suspected to be especially sensitive to environmental acidification associated with global climate change. We have investigated the effects of hypercapnia and hypoxia on the deep-sea urchin Strongylocentrotus fragilis, during two long-term exposure experiments (1 month and 4 month) at three levels of reduced pH at in situ O2 levels of approx. 10% saturation, and also to control pH at 100% O2 saturation. During the first experiment, internal acid-base balance was investigated during a one-month exposure; results show S. fragilis has limited ability to compensate for the respiratory acidosis brought on by reduced pH, due in part to low non-bicarbonate extracellular fluid buffering capacity. During the second experiment, longer-term effects of hypercapnia and variable O2 on locomotion, feeding, growth, and gonadosomatic index (GSI) were investigated; results show significant mortality and correlation of all measured parameters with environmental acidification at pH 6.6. Transient adverse effects on locomotion and feeding were seen at pH 7.2, without compromise of growth or GSI. Based on the expected changes in ocean pH and oxygen, results suggest extinction of S. fragilis in the eastern North Pacific is unlikely. Rather, we expect a shoaling and contraction of its bathymetric range.

The Distribution of Dissolved Iron in the West Atlantic Ocean

PubMed Central

Rijkenberg, Micha J. A.; Middag, Rob; Laan, Patrick; Gerringa, Loes J. A.; van Aken, Hendrik M.; Schoemann, Véronique; de Jong, Jeroen T. M.; de Baar, Hein J. W.

2014-01-01

Iron (Fe) is an essential trace element for marine life. Extremely low Fe concentrations limit primary production and nitrogen fixation in large parts of the oceans and consequently influence ocean ecosystem functioning. The importance of Fe for ocean ecosystems makes Fe one of the core chemical trace elements in the international GEOTRACES program. Despite the recognized importance of Fe, our present knowledge of its supply and biogeochemical cycle has been limited by mostly fragmentary datasets. Here, we present highly accurate dissolved Fe (DFe) values measured at an unprecedented high intensity (1407 samples) along the longest full ocean depth transect (17500 kilometers) covering the entire western Atlantic Ocean. DFe measurements along this transect unveiled details about the supply and cycling of Fe. External sources of Fe identified included off-shelf and river supply, hydrothermal vents and aeolian dust. Nevertheless, vertical processes such as the recycling of Fe resulting from the remineralization of sinking organic matter and the removal of Fe by scavenging still dominated the distribution of DFe. In the northern West Atlantic Ocean, Fe recycling and lateral transport from the eastern tropical North Atlantic Oxygen Minimum Zone (OMZ) dominated the DFe-distribution. Finally, our measurements showed that the North Atlantic Deep Water (NADW), the major driver of the so-called ocean conveyor belt, contains excess DFe relative to phosphate after full biological utilization and is therefore an important source of Fe for biological production in the global ocean. PMID:24978190

An uncommon or just an ecologically demanding species? Finding of aggregations of the brittle-star Ophiothrix maculata on the Northwest African slope

NASA Astrophysics Data System (ADS)

Calero, Belén; Ramos, Ana; Ramil, Fran

2018-01-01

Ophiuroidea constitutes the largest class of the phylum Echinodermata. It includes families with suspension-feeder behaviour that can be found in dense aggregations in all oceans worldwide. Ophiothrix maculata was known as a rare suspension-feeder brittle star, with only four records in the Eastern Central Atlantic dating from almost 100 years ago. During the ten multidisciplinary Spanish and Norwegian surveys carried out from 2004 to 2012 off Northwest Africa, between the Gibraltar Strait and the Sierra Leone border from 19 to 1888 m depth, we sampled 1298 stations. We gathered about one million individuals and 124 kg of brittle stars at 501 of the stations. Eight hundred and thirty-two specimens of Ophiothrix maculata were collected at six localities on the continental slope off Mauritania, Western Sahara and Guinea Bissau, at depths between 155 and 594 m. The Guinea Bissau samples represent the southernmost current record for the species. Even though Ophiothrix maculata has been previously recorded only in isolation, we discovered dense concentrations on the Mauritanian slope on the Wolof's Seamount (580 individuals) and off the Western Sahara, in a Lophelia pertusa reef (202 individuals). In this paper, we describe these findings and discuss the association of this species to hard-bottom habitats and high primary production areas, outside of the oxygen minimum zone (OMZ). We also analyse what other factors may explain the patchy distribution of O. maculata on the Northwest African slope.

Environmental factors determining ammonia-oxidizing organism distribution and diversity in marine environments.

PubMed

Bouskill, Nicholas J; Eveillard, Damien; Chien, Diana; Jayakumar, Amal; Ward, Bess B

2012-03-01

Ammonia-oxidizing bacteria (AOB) and archaea (AOA) play a vital role in bridging the input of fixed nitrogen, through N-fixation and remineralization, to its loss by denitrification and anammox. Yet the major environmental factors determining AOB and AOA population dynamics are little understood, despite both groups having a wide environmental distribution. This study examined the relative abundance of both groups of ammonia-oxidizing organisms (AOO) and the diversity of AOA across large-scale gradients in temperature, salinity and substrate concentration and dissolved oxygen. The relative abundance of AOB and AOA varied across environments, with AOB dominating in the freshwater region of the Chesapeake Bay and AOA more abundant in the water column of the coastal and open ocean. The highest abundance of the AOA amoA gene was recorded in the oxygen minimum zones (OMZs) of the Eastern Tropical South Pacific (ETSP) and the Arabian Sea (AS). The ratio of AOA : AOB varied from 0.7 in the Chesapeake Bay to 1600 in the Sargasso Sea. Relative abundance of both groups strongly correlated with ammonium concentrations. AOA diversity, as determined by phylogenetic analysis of clone library sequences and archetype analysis from a functional gene DNA microarray, detected broad phylogenetic differences across the study sites. However, phylogenetic diversity within physicochemically congruent stations was more similar than would be expected by chance. This suggests that the prevailing geochemistry, rather than localized dispersal, is the major driving factor determining OTU distribution. © 2011 Society for Applied Microbiology and Blackwell Publishing Ltd.

Global Compilation of Marine Varve Records

NASA Astrophysics Data System (ADS)

Schimmelmann, A.; Lange, C.; Schieber, J.; Francus, P.; Ojala, A.; Zolitschka, B.

2016-02-01

Marine varves contain highly resolved records of geochemical and other paleoceanographic and paleoenvironmental proxies with annual to seasonal resolution. We present a global compilation of marine varved sedimentary records throughout the Holocene and Quaternary covering more than 50 sites worldwide. Marine varve deposition and preservation typically depend on environmental and sedimentological principles, such as a sufficiently high sedimentation rate, severe depletion of dissolved oxygen in bottom water to exclude bioturbation by macrobenthos, and a seasonally varying sedimentary input to yield a recognizable rhythmic varve pattern. Additional oceanographic factors may include the strength and depth range of the Oxygen Minimum Zone (OMZ) and regional anthropogenic eutrophication. Modern to Quaternary marine varves are not only found in those parts of the open ocean that comply with these principles, but also in fjords, embayments and estuaries with thermohaline density stratification, and nearshore `saline lakes' with strong hydrologic connections to ocean water. Marine varves have also been postulated in pre-Quaternary rocks. In the case of non-evaporitic laminations in fine-grained ancient marine rocks, laminations may not be varves but instead may have multiple alternative origins such as event beds or formation via bottom currents that transported and sorted silt-sized particles, clay floccules, and organic-mineral aggregates in the form of migrating bedload ripples. Modern marine ecosystems on continental shelves and slopes, in coastal zones and in estuaries are susceptible to stress by various factors that may result in oxygen-depletion in bottom waters. Sensitive laminated sites may play the important role of a `canary in the coal mine' where monitoring the character and geographical extent of laminations/varves serves as a diagnostic tool to judge environmental trends. Analyses of modern varve records will gain importance for simultaneously providing high-resolution and longer-term perspectives. Especially in regions with limited resources or at remote sites, the comparatively low cost of high-resolution sediment analyses for environmental monitoring is an essential advantage over continuous monitoring of oceanographic conditions in the water column.

Abundance of genes involved in mercury methylation in oceanic environments

NASA Astrophysics Data System (ADS)

Palumbo, A. V.; Podar, M.; Gilmour, C. C.; Brandt, C. C.; Brown, S. D.; Crable, B. R.; Weighill, D.; Jacobson, D. A.; Somenahally, A. C.; Elias, D. A.

2016-02-01

The distribution and diversity of genes involved in mercury methylation in oceanic environments is of interest in determining the source of mercury in ocean environments and may have predictive value for mercury methylation rates. The highly conserved hgcAB genes involved in mercury methylation provide an avenue for evaluating the genetic potential for mercury methylation. The genes are sporadically present in a few diverse groups of bacteria and Archaea including Deltaproteobacteria, Firmicutes and Archaea and of over 7000 sequenced species they are only present in about 100 genomes. Examination of sequence data from methylators and non-methylators indicates that these genes are associated with other genes involved in metal transformations and transport. We examined hgcAB presence in over 3500 microbial metagenomes (from all environments) and found the hgcAB genes were present in anaerobic oceanic environments but not in aerobic layers of the open ocean. The genes were common in sediments from marine, coastal and estuarine sources as well as polluted environments. The genes were rare, found in 7 of 138 samples, in metagenomes from the pelagic water column including profiles though the oxygen minimum zone. Other oxic and sub-oxic coastal waters also demonstrated a lack of hgcAB genes including the OMZ in the Eastern North Pacific Ocean. There were some unique hgcA like unique sequences found in metagenomes from depth in the Pacific and Southern Atlantic Ocean. Coastal "dead zone" waters may be important sources of MeHg as the hgcAB genes were abundant in the anoxic waters of a stratified fjord. The genes were absent in microbiomes from vertebrates but were in invertebrate microbiomes However, oceanic species were underrepresented in these samples. Climate change could provide an additional flux of MeHg to the oceans as we found the most abundant representation of hgcAB genes in arctic permafrost. Thus warming could increase flux of methyl mercury to arctic waters.

Effects of varied nitrate and phosphate supply on polysaccharidic and proteinaceous gel particles production during tropical phytoplankton bloom experiments

NASA Astrophysics Data System (ADS)

Engel, A.; Borchard, C.; Loginova, A.; Meyer, J.; Hauss, H.; Kiko, R.

2015-04-01

It has been suggested that oxygen minimum zones (OMZ) will expand in the tropical oceans as a result of global change with potential consequences for marine element cycling, such as an increase in anaerobic nitrogen loss, resulting in a lower supply of nitrate relative to phosphate to the euphotic zone. So far, the effects of changes in nutrient ratios on organic matter recycling and export fluxes are not well understood. Here, were investigated how different phosphate (Varied P: 0.15-1.58 μmol L-1) or nitrate (Varied N: 1.9-21.9 μmol L-1) concentrations affect the abundance and size distribution of polysaccharidic transparent exopolymer particles (TEP), which are suggested to enhance particle aggregation and export fluxes, and on proteinaceous coomassie stainable particles (CSP), a supposedly good substrate for heterotrophic bacteria. Two series of mesocosm bloom experiments were conducted with natural plankton communities collected from the Eastern Tropical North Atlantic (ETNA) close to Cape Verde in October 2012. Until bloom peak, a positive correlation between gel particle abundance and Chl a concentration was determined, linking the release of dissolved gel precursors and the subsequent formation of gel particles to autotrophic production. After bloom peak, gel particle abundance remained stable or even increased, implying a continued partitioning of dissolved into particulate organic matter after biomass production itself ceased. During both experiments, differences between TEP and CSP dynamics were observed; TEP were generally more abundant than CSP. Changes in size distribution indicated aggregation of TEP during the bloom, while newly formed CSP decomposed. Abundance of gel particles clearly increased with nitrate concentration during the second experiment, suggesting that changes in [DIN]:[DIP] ratios can affect gel particle formation with potential consequences for carbon and nitrogen cycling as well as food web dynamics in tropical ecosystems.

Ontogenetic Responses of Calanus chilensis to Hypoxia from Northern Chile (23ºS), Humboldt Current Ecosystem

NASA Astrophysics Data System (ADS)

Ruz, P. M.; Hidalgo, P.; Escribano, R.; Franco-Cisterna, B.; Yebra, L.; Keister, J. E.

2016-02-01

Eastern Boundary Upwelling Systems are being subjected to expansion, intensification and shoaling of Oxygen Minimum Zones (OMZ's), as a result of ongoing climate change. To understand how dominant epipelagic copepods may respond to stressful conditions induced by low oxygen, we experimentally studied the effect of hypoxia over the stage-specific physiology of Calanus chilensis from the Mejillones Bay (23°S — 70°W), northern Chile, during the winters of 2013 and 2014. Females, eggs and nauplii (NI to NIV) of C. chilensis were incubated under hypoxia ( 0.7 mg O2 L-1) and normoxia ( 8.3 mg O2 L-1) conditions at a constant temperature of 14ºC as to estimate egg production rate (EPR), hatching success (HS) and naupliar growth and development time. Additionally, we estimated survivorship by using Neutral Red technique, and also examined female metabolism by measuring specific activity of the enzymes Aminoacyl-tRNA synthetases (spAARS) (growth index) and the electron transport system (spETS) (potential respiration). Survival of females and EPR were not significantly affected by dissolved oxygen (DO) conditions, coinciding with no significant changes in their metabolism. By contrast, HS was reduced from normoxia (70%) to hypoxia (30%), whereas naupliar growth (NI to NIII) was lower under hypoxia (0.155 ± 0.007 d-1) than normoxia (0.237 ± 0.006 d-1), resulting also in a longer development time, 6.490 ± 0.353 d and 4.238 ± 0.149 d, respectively. Most eggs and nauplii collected at the end of the experiments were alive, although a higher proportion of organisms were recovered in normoxia than hypoxia. Our results revealed stage-specific responses to hypoxia in C. chilensis and the importance of ontogenetic responses to variable levels of oxygenation in the upwelling zone.

Uptake of phytodetritus by benthic foraminifera under oxygen depletion at the Indian Margin (Arabian Sea)

NASA Astrophysics Data System (ADS)

Enge, A. J.; Witte, U.; Kucera, M.; Heinz, P.

2013-09-01

Benthic foraminifera in sediments on the Indian margin of the Arabian Sea where the oxygen minimum zone (OMZ) impinges on the continental slope are exposed to particularly severe levels of oxygen depletion. Food supply for the benthic community is high but delivered in distinct pulses during upwelling and water mixing events associated with summer and winter monsoon periods. In order to investigate the response by benthic foraminifera to such pulsed food delivery under oxygen concentrations of less than 0.1 mL L-1 (4.5 μmol L-1), an in situ isotope labeling experiment (13C, 15N) was performed at the western continental slope of India at 540 m water depth (OMZ core region). The assemblage of living foraminifera (>125 μm) in the uppermost centimeter at this depth is characterized by an unexpectedly high population density of 3982 ind. 10 cm-2 and a strong dominance by few calcareous species. For the experiment, we concentrated on the nine most abundant taxa, which constitute 93% of the entire foraminifera population at 0-1 cm sediment depth. Increased concentrations of 13C and 15N in the cytoplasm indicate that all investigated taxa took up the labeled phytodetritus during the 4 day experimental phase. In total, these nine species had assimilated 113.8 mg C m-2 (17.5% of the total added carbon). The uptake of nitrogen by the three most abundant taxa (Bolivina aff. B. dilatata, Cassidulina sp., Bulimina gibba) was 2.7 mg N m-2 (2% of the total added nitrogen) and showed the successful application of 15N as tracer in foraminiferal studies. The short-term response to the offered phytodetritus varied largely among foraminiferal species with Uvigerina schwageri being by far the most important species in short-term processing whereas the most abundant taxa Bolivina aff. B. dilatata and Cassidulina sp. showed comparably low uptake of the offered food. We suggest that the observed species-specific differences are related to individual biomass of species and to specific feeding preferences. The high numbers of living foraminifera and their rapid response to deposited fresh phytodetritus demonstrate the importance of foraminifera in short-term carbon cycling under oxygen-depleted conditions. We propose that foraminifera at the studied site benefit from unique adaptations in their metabolisms to nearly anoxic conditions as well as from the exclusion of macrofauna and the resulting relaxation of competition for food and low predation pressure.

Putative archaeal viruses from the mesopelagic ocean.

PubMed

Vik, Dean R; Roux, Simon; Brum, Jennifer R; Bolduc, Ben; Emerson, Joanne B; Padilla, Cory C; Stewart, Frank J; Sullivan, Matthew B

2017-01-01

Oceanic viruses that infect bacteria, or phages, are known to modulate host diversity, metabolisms, and biogeochemical cycling, while the viruses that infect marine Archaea remain understudied despite the critical ecosystem roles played by their hosts. Here we introduce "MArVD", for Metagenomic Archaeal Virus Detector, an annotation tool designed to identify putative archaeal virus contigs in metagenomic datasets. MArVD is made publicly available through the online iVirus analytical platform. Benchmarking analysis of MArVD showed it to be >99% accurate and 100% sensitive in identifying the 127 known archaeal viruses among the 12,499 viruses in the VirSorter curated dataset. Application of MArVD to 10 viral metagenomes from two depth profiles in the Eastern Tropical North Pacific (ETNP) oxygen minimum zone revealed 43 new putative archaeal virus genomes and large genome fragments ranging in size from 10 to 31 kb. Network-based classifications, which were consistent with marker gene phylogenies where available, suggested that these putative archaeal virus contigs represented six novel candidate genera. Ecological analyses, via fragment recruitment and ordination, revealed that the diversity and relative abundances of these putative archaeal viruses were correlated with oxygen concentration and temperature along two OMZ-spanning depth profiles, presumably due to structuring of the host Archaea community. Peak viral diversity and abundances were found in surface waters, where Thermoplasmata 16S rRNA genes are prevalent, suggesting these archaea as hosts in the surface habitats. Together these findings provide a baseline for identifying archaeal viruses in sequence datasets, and an initial picture of the ecology of such viruses in non-extreme environments.

40 CFR 63.1365 - Test methods and initial compliance procedures.

Code of Federal Regulations, 2013 CFR

2013-07-01

... design minimum and average temperature in the combustion zone and the combustion zone residence time. (B... establish the design minimum and average flame zone temperatures and combustion zone residence time, and... carbon bed temperature after regeneration, design carbon bed regeneration time, and design service life...

New Sensitive Kinetic Spectrophotometric Methods for Determination of Omeprazole in Dosage Forms

PubMed Central

Mahmoud, Ashraf M.

2009-01-01

New rapid, sensitive, and accurate kinetic spectrophotometric methods were developed, for the first time, to determine omeprazole (OMZ) in its dosage forms. The methods were based on the formation of charge-transfer complexes with both iodine and 2,3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ). The variables that affected the reactions were carefully studied and optimized. The formed complexes and the site of interaction were examined by UV/VIS, IR, and 1H-NMR techniques, and computational molecular modeling. Under optimum conditions, the stoichiometry of the reactions between OMZ and the acceptors was found to be 1 : 1. The order of the reactions and the specific rate constants were determined. The thermodynamics of the complexes were computed and the mechanism of the reactions was postulated. The initial rate and fixed time methods were utilized for the determination of OMZ concentrations. The linear ranges for the proposed methods were 0.10–3.00 and 0.50–25.00 μg mL−1 with the lowest LOD of 0.03 and 0.14 μg mL−1 for iodine and DDQ, respectively. Analytical performance of the methods was statistically validated; RSD was <1.25% for the precision and <1.95% for the accuracy. The proposed methods were successfully applied to the analysis of OMZ in its dosage forms; the recovery was 98.91–100.32% ± 0.94–1.84, and was found to be comparable with that of reference method. PMID:20140076

The role of the oceanic oxygen minima in generating biodiversity in the deep sea

NASA Astrophysics Data System (ADS)

Rogers, Alex D.

2000-01-01

Many studies on the deep-sea benthic biota have shown that the most species-rich areas lie on the continental margins between 500 and 2500 m, which coincides with the present oxygen-minimum in the world's oceans. Some species have adapted to hypoxic conditions in oxygen-minimum zones, and some can even fulfil all their energy requirements through anaerobic metabolism for at least short periods of time. It is, however, apparent that the geographic and vertical distribution of many species is restricted by the presence of oxygen-minimum zones. Historically, cycles of global warming and cooling have led to periods of expansion and contraction of oxygen-minimum layers throughout the world's oceans. Such shifts in the global distribution of oxygen-minimum zones have presented many opportunities for allopatric speciation in organisms inhabiting slope habitats associated with continental margins, oceanic islands and seamounts. On a smaller scale, oxygen-minimum zones can be seen today as providing a barrier to gene-flow between allopatric populations. Recent studies of the Arabian Sea and in other regions of upwelling also have shown that the presence of an oxygen-minimum layer creates a strong vertical gradient in physical and biological parameters. The reduced utilisation of the downward flux of organic material in the oxygen-minimum zone results in an abundant supply of food for organisms immediately below it. The occupation of this area by species exploiting abundant food supplies may lead to strong vertical gradients in selective pressures for optimal rates of growth, modes of reproduction and development and in other aspects of species biology. The presence of such strong selective gradients may have led to an increase in habitat specialisation in the lower reaches of oxygen-minimum zones and an increased rate of speciation.

Bounds on strain in large Tertiary shear zones of SE Asia from boudinage restoration

NASA Astrophysics Data System (ADS)

Lacassin, R.; Leloup, P. H.; Tapponnier, P.

1993-06-01

We have used surface-balanced restoration of stretched, boudinaged layers to estimate minimum amounts of finite strain in the mylonitic gneisses of the Oligo-Miocene Red River-Ailao Shan shear zone (Yunnan, China) and of the Wang Chao shear zone (Thailand). The layer-parallel extension values thus obtained range between 250 and 870%. We discuss how to use such extension values to place bounds on amounts of finite shear strain in these large crustal shear zones. Assuming simple shear, these values imply minimum total and late shear strains of, respectively, 33 ± 6 and 7 ± 3 at several sites along the Red River-Ailao Shan shear zone. For the Wang Chao shear zone a minimum shear strain of 7 ± 4 is deduced. Assuming homogeneous shear would imply that minimum strike-slip displacements along these two left-lateral shear zones, which have been interpreted to result from the India-Asia collision, have been of the order of 330 ± 60 km (Red River-Ailao Shan) and 35 ± 20 km (Wang Chao).

Cnm is a major virulence factor of invasive Streptococcus mutans and part of a conserved three-gene locus

PubMed Central

Avilés-Reyes, A.; Miller, J.H.; Simpson-Haidaris, P.J.; Lemos, J.A.; Abranches, J.

2014-01-01

SUMMARY Cnm, a collagen- and laminin-binding protein present in a subset of Streptococcus mutans strains, mediates binding to extracellular matrices (ECM), intracellular invasion and virulence in the Galleria mellonella model. Antibodies raised against Cnm were used to confirm expression and the cell surface localization of Cnm in the highly invasive OMZ175 strain. Sequence analysis identified two additional genes (cnaB and cbpA) encoding putative surface proteins immediately upstream of cnm. Inactivation of cnaB and cbpA in OMZ175, individually or in combination, did not decrease the ability of this highly invasive and virulent strain to bind to different ECM proteins, invade human coronary artery endothelial cells (HCAEC), or kill G. mellonella. Similarly, expression of cnaB and cbpA in the cnm− strain UA159 revealed that these genes did not enhance Cnmrelated phenotypes. However, integration of cnm in the chromosome of UA159 significantly increased its ability to bind to collagen and laminin, invade HCAEC, and kill G. mellonella. Moreover, the presence of antibodies against Cnm nearly abolished the ability of OMZ175 to bind to collagen and laminin and invade HCAEC, and significantly protected G. mellonella against OMZ175 infection. We concluded that neither CnaB nor CbpA is necessary for the expression of Cnm-related traits. We also provided definitive evidence that Cnm is an important virulence factor and a suitable target for the development of novel preventive and therapeutic strategies to combat invasive S. mutans strains. PMID:24103776

Oceanic nitrogen cycling and N2O flux perturbations in the Anthropocene

NASA Astrophysics Data System (ADS)

Landolfi, A.; Somes, C. J.; Koeve, W.; Zamora, L. M.; Oschlies, A.

2017-08-01

There is currently no consensus on how humans are affecting the marine nitrogen (N) cycle, which limits marine biological production and CO2 uptake. Anthropogenic changes in ocean warming, deoxygenation, and atmospheric N deposition can all individually affect the marine N cycle and the oceanic production of the greenhouse gas nitrous oxide (N2O). However, the combined effect of these perturbations on marine N cycling, ocean productivity, and marine N2O production is poorly understood. Here we use an Earth system model of intermediate complexity to investigate the combined effects of estimated 21st century CO2 atmospheric forcing and atmospheric N deposition. Our simulations suggest that anthropogenic perturbations cause only a small imbalance to the N cycle relative to preindustrial conditions (˜+5 Tg N y-1 in 2100). More N loss from water column denitrification in expanded oxygen minimum zones (OMZs) is counteracted by less benthic denitrification, due to the stratification-induced reduction in organic matter export. The larger atmospheric N load is offset by reduced N inputs by marine N2 fixation. Our model predicts a decline in oceanic N2O emissions by 2100. This is induced by the decrease in organic matter export and associated N2O production and by the anthropogenically driven changes in ocean circulation and atmospheric N2O concentrations. After comprehensively accounting for a series of complex physical-biogeochemical interactions, this study suggests that N flux imbalances are limited by biogeochemical feedbacks that help stabilize the marine N inventory against anthropogenic changes. These findings support the hypothesis that strong negative feedbacks regulate the marine N inventory on centennial time scales.

Multiproxy Study of a Holocene Record From Western Pescadero Basin, Gulf of California, Mexico: Paleoclimatic inferences

NASA Astrophysics Data System (ADS)

Perez-Cruz, L. L.; Valdez, M.; Roy, P. D.

2013-12-01

A sedimentary sequence (gravity core T-56, 256 cm length) from Pescadero Basin on the western side of the Gulf of California is analyzed as part of a multiproxy study. The core was collected within the Oxygen Minimum Zone (OMZ) at 597 m depth, aboard of the R/V "El Puma". Pescadero basin is located at mouth of the gulf; in a location sensitive to record the changes in the gulf and the Eastern Pacific Ocean. The sedimentary sequence is analyzed to contribute to understanding the climatic variability in the southern part of the gulf of California during the Holocene using geochemistry (major and trace elements and Corg), magnetic properties and benthic foraminifera assemblages as proxy of changes in paleoproductivity, paleoprecipitation and bottom water oxygenation. The core is characterized by silty-clay sediments, and exhibits a turbidite between 130 and 235 cm, distinguished by sandy sediments and reworking material. From 130 cm to the top it shows a visible laminated structure. Chronology is based on six AMS radiocarbon dates, and estimated sedimentation rates are 0.22, 0.18, 0.17 and 0.05 mm/yr. The core covers c. last 10,500 years. Variations in major and trace elements (Ti, K, Al, K, Zr) and magnetic susceptibility indicate fluctuations in terrigenous input related to changes in hydrological conditions, Benthic foraminifera assemblages and Corg along the sequence indicate that Pescadero basin is sensitive to paleoceanographic changes. Corg and benthic foraminiferal assemblages show downcore variations related to paleoproductivity changes. For the Early Holocene, low values of Corg and epifaunal benthic foraminifera suggest oxic conditions in bottom waters and strong stratification with low productivity. Organic carbon shows higher values towards the bottom of the core, for the last 1300 years.

The Effect of Temperature on Key Aspects of the Nitrogen Cycle: Comparisons Across Systems

NASA Astrophysics Data System (ADS)

Warren, V.

2016-02-01

The nitrogen cycle sustains life by converting inert di-nitrogen gas (N2) into fixed bio-available forms (e.g. ammonium, nitrate), as well as returning it via gases such as N2 and nitrous oxide (N2O) back into the atmosphere. Recently, the effects of long term warming on key components of the carbon cycle, which is tightly coupled to the nitrogen cycle, have been highlighted but how global warming might systematically affect the balance of the nitrogen cycle is still largely unknown. The effect of long term warming on denitrification and nitrification were investigated using long-term, experimental mesocosm (2006 to present), allowing us to study the effect of warming on natural communities of bacteria involved in these processes. Denitrification activity responded to warming in the short-term in a predictable way, however, long-term moderate warming of 3-5oC (the predicted global increase by the end of the century) increased the specific activity of the sediment and had a pronounced effect on the ratio of N2O to N2. The latter suggesting that with sustained warming, denitrifying bacteria become more efficient at complete denitrification. Molecular analysis of denitrifying communities in our long-term mesocosm experiment also suggested a profound alteration of the communities underlying these differences in process. Similar short-term experiments were carried out on sediments and the water column of the North Eastern Tropical Pacific Oxygen minimum zone (NETP OMZ) including its effect on N2 fixation and here we contrast the findings from those markedly different settings. This research has indicated that we may see similar effects on the nitrogen cycle as we have previously determined in the carbon cycle, with the balance of N-species consumed and created becoming out of balance.

Analysis of Ecological Distribution and Genomic Content from a Clade of Bacteroidetes Endemic to Sulfidic Environments

NASA Astrophysics Data System (ADS)

Zhou, K.; Sylvan, J. B.; Hallam, S. J.

2017-12-01

The Bacteroidetes are a ubiquitous phylum of bacteria found in a wide variety of habitats. Marine Bacteroidetes are known to utilize complex carbohydrates and have a potentially important role in the global carbon cycle through processing these compounds, which are not digestible by many other microbes. Some members of the phylum are known to perform denitrification and are facultative anaerobes, but Bacteroidetes are not known to participate in sulfur redox cycling. Recently, it was shown that a clade of uncultured Bacteroidetes, including the VC2.1_Bac22 group, appears to be endemic to sulfidic environments, including hydrothermal vent sulfide chimneys, sediments and marine water column oxygen minimum zones (OMZs). This clade, dubbed the Sulfiphilic Bacteroidetes, is not detected in 16S rRNA amplicon studies from non-sulfidic environments. To test the hypothesis that the Sulphiphilic Bacteroidetes are involved in sulfur redox chemistry, we updated our meta-analysis of the clade using 16s rRNA sequences from public databases and employed single-cell genomics to survey their genomic potential using 19 single amplified genomes (SAGs) isolated from the seasonally anoxic Saanich Inlet, a seasonally hypoxic basin in British Columbia. Initial analysis of these SAGs indicates the Sulphiphilic Bacteroidetes may perform sulfur redox reactions using a three gene psrABC operon encoding the polysulfide reductase enzyme complex with a thiosulfate sulfurtransferase (rhodanese), which putatively uses cyanide to convert thiosulfate to sulfite, just upstream. Interestingly, this is the same configuration as discovered recently in some Marine Group A bacteria. Further aspects of the Sulphiphilic Bacteroidetes' genomic potential will be presented in light of their presence in sulfidic environments.

Abundance and distribution of archaeal acetyl-CoA/propionyl-CoA carboxylase genes indicative for putatively chemoautotrophic Archaea in the tropical Atlantic's interior.

PubMed

Bergauer, Kristin; Sintes, Eva; van Bleijswijk, Judith; Witte, Harry; Herndl, Gerhard J

2013-06-01

Recently, evidence suggests that dark CO2 fixation in the pelagic realm of the ocean does not only occur in the suboxic and anoxic water bodies but also in the oxygenated meso- and bathypelagic waters of the North Atlantic. To elucidate the significance and phylogeny of the key organisms mediating dark CO2 fixation in the tropical Atlantic, we quantified functional genes indicative for CO2 fixation. We used a Q-PCR-based assay targeting the bifunctional acetyl-CoA/propionyl-CoA carboxylase (accA subunit), a key enzyme powering inter alia the 3-hydroxypropionate/4-hydroxybutyrate cycle (HP/HB) and the archaeal ammonia monooxygenase (amoA). Quantification of accA-like genes revealed a consistent depth profile in the upper mesopelagial with increasing gene abundances from subsurface layers towards the oxygen minimum zone (OMZ), coinciding with an increase in archaeal amoA gene abundance. Gene abundance profiles of metabolic marker genes (accA, amoA) were correlated with thaumarchaeal 16S rRNA gene abundances as well as CO2 fixation rates to link the genetic potential to actual rate measurements. AccA gene abundances correlated with archaeal amoA gene abundance throughout the water column (r(2)  = 0.309, P < 0.0001). Overall, a substantial genetic predisposition of CO2 fixation was present in the dark realm of the tropical Atlantic in both Archaea and Bacteria. Hence, dark ocean CO2 fixation might be more widespread among prokaryotes inhabiting the oxygenated water column of the ocean's interior than hitherto assumed. © 2013 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

Zooplankton and the oceanography of the eastern tropical Pacific: A review

NASA Astrophysics Data System (ADS)

Fernández-Álamo, María Ana; Färber-Lorda, Jaime

2006-05-01

We review the spatial and temporal patterns of zooplankton in the eastern tropical Pacific Ocean and relationships with oceanographic factors that affect zooplankton distribution, abundance and trophic relationships. Large-scale spatial patterns of some zooplankton groups show broad coincidence with surface water masses, circulation, and upwelling regions, in agreement with an ecological and dynamic partitioning of the pelagic ecosystem. The papers reviewed and a new compilation of zooplankton volume data at large-scale show that abundance patterns of zooplankton biomass have their highest values in the upwelling regions, including the Gulf of Tehuantepec, the Costa Rica Dome, the equatorial cold tongue, and the coast of Peru. Some of the first studies of zooplankton vertical distribution were done in this region, and a general review of the topic is presented. The possible physiological implications of vertical migration in zooplankton and the main hypotheses are described, with remarks on the importance of the oxygen minimum zone (OMZ) as a barrier to both the vertical distribution and migration of zooplankton in the region. Recent results, using multiple-net gear, show that vertical distribution is more complex than previously thought. There are some well-adapted species that do live and migrate within the OMZ. Temporal patterns are reviewed and summarized with historical data. Seasonal variations in zooplankton biomass follow productivity cycles in upwelling areas. No zooplankton time series exist to resolve ENSO effects in oceanic regions, but some El Niño events have had effects in the Peru Current ecosystem. Multidecadal periods of up to 50 years show a shift from a warm sardine regime with a low zooplankton biomass to a cool anchovy regime in the eastern Pacific with higher zooplankton biomasses. However, zooplankton volume off Peru has remained at low values since the 1972 El Niño, a trend opposite to that of anchoveta biomass since 1984. Studies of trophic relations emphasize the difference in the productivity cycle in the eastern tropical Pacific compared to temperate or polar ecosystems, with no particular peaks in the stocks of either zooplankton or phytoplankton. Productivity is more dependent on local events like coastal upwelling or water circulation, especially in the equatorial countercurrent and around the equatorial cool-tongue. Micrograzers are very important in the tropics as are predatory mesozooplankton. Up to 70% of the daily primary productivity is consumed by microzooplankton, which thus regulates the phytoplankton stocks. Micrograzers are an important link between primary producers, including bacteria, and mesozooplankton, constituting up to 80% of mesozooplankton food. Oceanography affects zooplankton trophic relationships through spatial-temporal effects on primary productivity and on the distributions of metabolic factors, food organisms, and predators. This paper is part of a comprehensive review of the oceanography of the eastern tropical Pacific.

Linking Net Community Production and Hydrography Under La Nina and El Nino conditions in the Eastern Tropical South Pacific (ETSP)

NASA Astrophysics Data System (ADS)

Prokopenko, M. G.

2016-02-01

Presence of the Subantarctic Mode Water (SAMW) in the upper thermocline of the ETSP results in steep vertical gradients in the major nutrient stoichiometry, specifically the silicate to nitrate ratio. Thus, biological export production within the High Nutrient Low Chlorophyll (HNLC) and low-silicate waters of the northern ETSP, the region of high CO2 outgassing, is likely to be particularly sensitive to the variability in the hydrographic conditions that determine the depth of origin for the waters upwelled into the euphotic zone. During two cruises, in spring 2010 (mild El Nino), and in spring 2011 (moderately strong La Nina), we quantified Net Community Production rates (NCP, as Net biological O2 production), based on O2/Ar supersaturation ratios measured along 10S between the coast of Peru and 100W. Biases in the estimates of the net biological O2 production within the mixed layer arising from non-equilibrium O2 fluxes from the Oxygen Minimum Zone below, were quantified with a regional box model of coupled oxygen-nitrate mass balances. Potential export efficiencies along the 10S transect were derived from the comparison between satellite-based Net Primary Production and our field-based NCP estimates. Somewhat predictably, regional NCP rates and potential export efficiency, as well as the degree of the biological nitrate uptake were higher under the La Nina than under the El Nino conditions, likely due to deeper origin of the upwelled waters characterized by the higher silicate to nitrate ratios. A less intuitive implication is that while reducing the CO2 outgassing by the increased biological carbon uptake locally, the La Nina-enhanced export production within the ETSP may transiently diminish basin-scale capacity for the oceanic biological CO2 uptake by enhancing the fixed nitrogen losses, This may occur via expanding the vertical extent of the regional OMZ, as was observed at several stations along the cruise tracks in 2011, which in turn may drive an increase in the magnitude of regional denitrification. Further work would test this hypothesis.

40 CFR 63.1257 - Test methods and compliance procedures.

Code of Federal Regulations, 2012 CFR

2012-07-01

...)(2), or 63.1256(h)(2)(i)(C) with a minimum residence time of 0.5 seconds and a minimum temperature of... temperature of the organic HAP, must consider the vent stream flow rate, and must establish the design minimum and average temperature in the combustion zone and the combustion zone residence time. (B) For a...

40 CFR 63.1257 - Test methods and compliance procedures.

Code of Federal Regulations, 2011 CFR

2011-07-01

...)(2), or 63.1256(h)(2)(i)(C) with a minimum residence time of 0.5 seconds and a minimum temperature of... temperature of the organic HAP, must consider the vent stream flow rate, and must establish the design minimum and average temperature in the combustion zone and the combustion zone residence time. (B) For a...

40 CFR 63.1257 - Test methods and compliance procedures.

Code of Federal Regulations, 2010 CFR

2010-07-01

...)(2), or 63.1256(h)(2)(i)(C) with a minimum residence time of 0.5 seconds and a minimum temperature of... temperature of the organic HAP, must consider the vent stream flow rate, and must establish the design minimum and average temperature in the combustion zone and the combustion zone residence time. (B) For a...

Therapeutic effect of low molecular weight chitosan containing sepia ink on ethanol-induced gastric ulcer in rats.

PubMed

Zhang, Wei; Liu, Kang; Li, Lei; Li, Yingxin; Sui, Xianxian; Rao, Yinzhu; Wu, Jiahao; Wu, Qiuping

2016-12-01

To evaluate the role of low molecular chitosan containing sepia ink (LMCS) in ethanol-induced (5 ml/kg) gastric ulcer in rats. Animals were divided into four groups (n = 12): normal group (Normal), negative control group (Con), experiment group (LMCS) and positive control Omeprazole group (OMZ). Gastric empty rate was detected in the first 7 days. Rats were sacrificed at 7, 14 and 21 day for histology and ELISA detections. Gastric empty was no significant differences among the groups (P > 0.05). Histological observation showed gastric mucosal LMCS treated had better healing effect. Hydroxyproline (Hyp) was significantly increased from 7 day (P < 0.05). LMCS significantly inhibited malondialdehyde (MDA) generation for lipid peroxidation from 7 day (P < 0.05). LMCS significantly promoted the activity of superoxide dismutase (SOD), catalase (CAT) and glutathione peroxidase (GPx) at the earlier stage (P < 0.05). OMZ had the similar effects above. As for myeloperoxidase (MPO), LMCS significantly decreased and restored it to normal levels from 7 day (P < 0.05), it is earlier than OMZ which is from 14 day. LMCS can improve gastric mucosa tissue repair, exert significant influences on oxidative and antioxidant enzyme activities and neutrophil infiltration.

Healing effects of Musa sapientum var. paradisiaca in diabetic rats with co-occurring gastric ulcer: cytokines and growth factor by PCR amplification.

PubMed

Kumar, Mohan; Gautam, Manish Kumar; Singh, Amit; Goel, Raj Kumar

2013-11-05

The present study evaluates the effects of extract of Musa sapientum fruit (MSE) on ulcer index, blood glucose level and gastric mucosal cytokines, TNF-α and IL-1β and growth factor, TGF-α (affected in diabetes and chronic ulcer) in acetic acid (AA)-induced gastric ulcer (GU) in diabetic (DR) rat. MSE (100 mg/kg, oral), omeprazole (OMZ, 2.0 mg/kg, oral), insulin (INS, 4 U/kg, sc) or pentoxyphylline (PTX, 10 mg/kg, oral) were given once daily for 10 days in 14 days post-streptozotocin (60 mg/kg, intraperitoneal)-induced diabetic rats while, the normal/diabetic rats received CMC for the same period after induction of GU with AA. Ulcer index was calculated based upon the product of length and width (mm2/rat) of ulcers while, TNF-α, IL-1β and TGF-α were estimated in the gastric mucosal homogenate from the intact/ulcer region. Phytochemical screening and HPTLC analysis of MSE was done following standard procedures. An increase in ulcer index, TNF-α and IL-1β were observed in normal (NR)-AA rat compared to NR-normal saline rat, which were further increased in DR-AA rat while, treatments of DR-AA rat with MSE, OMZ, INS and PTX reversed them, more so with MSE and PTX. Significant increase in TGF-α was found in NR-AA rat which did not increase further in DR-AA rat. MSE and PTX tended to increase while, OMZ and INS showed little or no effect on TGF-α in AA-DR rat. Phytochemical screening of MSE showed the presence of saponins, flavonoids, glycosides, steroids and alkaloids and HPTLC analysis indicated the presence of eight active compounds. MSE showed antidiabetic and better ulcer healing effects compared with OMZ (antiulcer) or INS (antidiabetic) in diabetic rat and could be more effective in diabetes with concurrent gastric ulcer.

High exhaust temperature, zoned, electrically-heated particulate matter filter

DOEpatents

Gonze, Eugene V.; Paratore, Jr., Michael J.; Bhatia, Garima

2015-09-22

A system includes a particulate matter (PM) filter, an electric heater, and a control circuit. The electric heater includes multiple zones, which each correspond to longitudinal zones along a length of the PM filter. A first zone includes multiple discontinuous sub-zones. The control circuit determines whether regeneration is needed based on an estimated level of loading of the PM filter and an exhaust flow rate. In response to a determination that regeneration is needed, the control circuit: controls an operating parameter of an engine to increase an exhaust temperature to a first temperature during a first period; after the first period, activates the first zone; deactivates the first zone in response to a minimum filter face temperature being reached; subsequent to deactivating the first zone, activates a second zone; and deactivates the second zone in response to the minimum filter face temperature being reached.

76 FR 44880 - Security Zone; Escorted Vessels in Captain of the Port Ohio Valley Zone

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-27

.... Minimum safe speed means the speed at which a vessel proceeds when it is fully off plane, completely... minimum safe speed if it is: (1) On a plane; (2) In the process of coming up onto or coming off a plane...

[Assessment on the ecological suitability in Zhuhai City, Guangdong, China, based on minimum cumulative resistance model].

PubMed

Li, Jian-fei; Li, Lin; Guo, Luo; Du, Shi-hong

2016-01-01

Urban landscape has the characteristics of spatial heterogeneity. Because the expansion process of urban constructive or ecological land has different resistance values, the land unit stimulates and promotes the expansion of ecological land with different intensity. To compare the effect of promoting and hindering functions in the same land unit, we firstly compared the minimum cumulative resistance value of promoting and hindering functions, and then looked for the balance of two landscape processes under the same standard. According to the ecology principle of minimum limit factor, taking the minimum cumulative resistance analysis method under two expansion processes as the evaluation method of urban land ecological suitability, this research took Zhuhai City as the study area to estimate urban ecological suitability by relative evaluation method with remote sensing image, field survey, and statistics data. With the support of ArcGIS, five types of indicators on landscape types, ecological value, soil erosion sensitivity, sensitivity of geological disasters, and ecological function were selected as input parameters in the minimum cumulative resistance model to compute urban ecological suitability. The results showed that the ecological suitability of the whole Zhuhai City was divided into five levels: constructive expansion prohibited zone (10.1%), constructive expansion restricted zone (32.9%), key construction zone (36.3%), priority development zone (2.3%), and basic cropland (18.4%). Ecological suitability of the central area of Zhuhai City was divided into four levels: constructive expansion prohibited zone (11.6%), constructive expansion restricted zone (25.6%), key construction zone (52.4%), priority development zone (10.4%). Finally, we put forward the sustainable development framework of Zhuhai City according to the research conclusion. On one hand, the government should strictly control the development of the urban center area. On the other hand, the secondary urban center area such as Junchang and Doumen need improve the public infrastructure to relieve the imbalance between eastern and western development in Zhuhai City.

Microbial diversity from chlorophyll maximum, oxygen minimum and bottom zones in the southwestern Atlantic Ocean

NASA Astrophysics Data System (ADS)

Medina-Silva, Renata; de Oliveira, Rafael R.; Pivel, Maria A. G.; Borges, Luiz G. A.; Simão, Taiz L. L.; Pereira, Leandro M.; Trindade, Fernanda J.; Augustin, Adolpho H.; Valdez, Fernanda P.; Eizirik, Eduardo; Utz, Laura R. P.; Groposo, Claudia; Miller, Dennis J.; Viana, Adriano R.; Ketzer, João M. M.; Giongo, Adriana

2018-02-01

Conspicuous physicochemical vertical stratification in the deep sea is one of the main forces driving microbial diversity in the oceans. Oxygen and sunlight availability are key factors promoting microbial diversity throughout the water column. Ocean currents also play a major role in the physicochemical stratification, carrying oxygen down to deeper zones as well as moving deeper water masses up towards shallower depths. Water samples within a 50-km radius in a pockmark location of the southwestern Atlantic Ocean were collected and the prokaryotic communities from different water depths - chlorophyll maximum, oxygen minimum and deep-sea bottom (down to 1355 m) - were described. At phylum level, Proteobacteria were the most frequent in all water depths, Cyanobacteria were statistically more frequent in chlorophyll maximum zone, while Thaumarchaeota were significantly more abundant in both oxygen minimum and bottom waters. The most frequent microorganism in the chlorophyll maximum and oxygen minimum zones was a Pelagibacteraceae operational taxonomic unit (OTU). At the bottom, the most abundant genus was the archaeon Nitrosopumilus. Beta diversity analysis of the 16S rRNA gene sequencing data uncovered in this study shows high spatial heterogeneity among water zones communities. Our data brings important contribution for the characterisation of oceanic microbial diversity, as it consists of the first description of prokaryotic communities occurring in different oceanic water zones in the southwestern Atlantic Ocean.

Immunological relationships between glucosyltransferases from Streptococcus mutans serotypes.

PubMed

Kuramitsu, H; Ingersoll, L

1976-09-01

Partially purified glycosyltransferase enzymes for Streptococcus mutans GS-5 (serotype c) have been utilized to prepare antibodies directed against the soluble glucan-synthesizing activity, GTF-B, and the insoluble-soluble glucan synthetic activity, GTF-A. Anti-GTF-A inhibited insoluble glucan formation catalyzed by the extracellular enzymes from strains GS-5 and FA-1 (serotype b) to a much greater extent than that of strains HS-6 (serotype a) or OMZ-176 (serotype d). This antibody fraction also inhibited both the cell-associated glucosyltransferase activities as well as the sucrose-mediated adherence of cells to glass surfaces by strains GS-5 and FA-1 but not that of strains HS-6 and OMZ-176. Anti-GTF-B inhibited soluble glucan formation catalyzed by the extracellular enzymes of strains GS-5 but not that of strain HS-6, FA-1, or OMZ-176. However, this antibody fraction did not strongly inhibit either the cell-associated glycosyltransferase activity or cellular adherence of any of the four strains. These results with body antibody fractions were also correlated with the ability of the antibodies to agglutinate the cells and form precipitin bands after immunodiffusion with the extracellular enzymes. Antibody prepared against the homogeneous soluble glucan-synthesizing enzyme demonstrated similar effects to the anti-GTF-B fraction. These results are discussed in terms of the antigenic relationships existing between the glucosyltransferases from different serotypes of S. mutans.

Seasonal monitoring of deep-sea megabenthos in Barkley Canyon cold seep by internet operated vehicle (IOV)

PubMed Central

Doya, Carolina; Chatzievangelou, Damianos; Bahamon, Nixon; Purser, Autun; De Leo, Fabio C.; Juniper, S. Kim; Thomsen, Laurenz; Aguzzi, Jacopo

2017-01-01

Knowledge of the processes shaping deep-sea benthic communities at seasonal scales in cold-seep environments is incomplete. Cold seeps within highly dynamic regions, such as submarine canyons, where variable current regimes may occur, are particularly understudied. Novel Internet Operated Vehicles (IOVs), such as tracked crawlers, provide new techniques for investigating these ecosystems over prolonged periods. In this study a benthic crawler connected to the NEPTUNE cabled infrastructure operated by Ocean Networks Canada was used to monitor community changes across 60 m2 of a cold-seep area of the Barkley Canyon, North East Pacific, at ~890 m depth within an Oxygen Minimum Zone (OMZ). Short video-transects were run at 4-h intervals during the first week of successive calendar months, over a 14 month period (February 14th 2013 to April 14th 2014). Within each recorded transect video megafauna abundances were computed and changes in environmental conditions concurrently measured. The responses of fauna to environmental conditions as a proxy of seasonality were assessed through analysis of abundances in a total of 438 video-transects (over 92 h of total footage). 7698 fauna individuals from 6 phyla (Cnidaria, Ctenophora, Arthropoda, Echinodermata, Mollusca, and Chordata) were logged and patterns in abundances of the 7 most abundant taxa (i.e. rockfish Sebastidae, sablefish Anoplopoma fimbria, hagfish Eptatretus stoutii, buccinids (Buccinoidea), undefined small crabs, ctenophores Bolinopsis infundibulum, and Scyphomedusa Poralia rufescens) were identified. Patterns in the reproductive behaviour of the grooved tanner crab (Chionnecetes tanneri) were also indicated. Temporal variations in biodiversity and abundance in megabenthic fauna was significantly influenced by variabilities in flow velocity flow direction (up or down canyon), dissolved oxygen concentration and month of study. Also reported here for the first time are transient mass aggregations of grooved tanner crabs through these depths of the canyon system, in early spring and likely linked to the crab’s reproductive cycle. PMID:28557992

Changing nutrient stoichiometry affects phytoplankton production, DOP build up and dinitrogen fixation - a mesocosm experiment in the eastern tropical North Atlantic

NASA Astrophysics Data System (ADS)

Meyer, J.; Löscher, C. R.; Neulinger, S. C.; Reichel, A. F.; Loginova, A.; Borchard, C.; Schmitz, R. A.; Hauss, H.; Kiko, R.; Riebesell, U.

2015-07-01

Ocean deoxygenation due to climate change may alter redox-sensitive nutrient cycles in the marine environment. The productive eastern tropical North Atlantic (ETNA) upwelling region may be particularly affected when the relatively moderate oxygen minimum zone (OMZ) deoxygenates further and microbially-driven nitrogen (N) loss processes are promoted. Consequently, water masses with a low N : P ratio could reach the euphotic layer, possibly influencing primary production in those waters. Previous mesocosm studies in the oligotrophic Atlantic Ocean identified N availability as controlling of primary production, while a possible co-limitation of nitrate and phosphate (P) could not be ruled out. To better understand the impact of changing N : P ratios on primary production and on N2 fixation in the ETNA surface ocean, we conducted land-based mesocosm experiments with natural plankton communities and applied a broad range of N : P ratios (2.67-48). Silicate was supplied at 15 μmol L-1 in all mesocosms. We monitored nutrient drawdown, bloom formation, biomass build up and diazotrophic feedback in response to variable nutrient stoichiometry. Our results confirmed N to be limiting to primary production. We found that excess P was channeled through particulate organic matter (POP) into the dissolved organic matter (DOP) pool. In mesocosms with low P availability, DOP was utilized while N2 fixation increased, suggesting a link between those two processes. Interestingly this observation was most pronounced in mesocosms where inorganic N was still available, indicating that bioavailable N does not necessarily has to have a negative impact on N2 fixation. We observed a shift from a mixed cyanobacterial/proteobacterial dominated active diazotrophic community towards diazotrophic diatom symbionts of the Richelia-Rhizosolenia symbiosis. We hypothesize that a potential change in nutrient stoichiometry in the ETNA might lead to a general shift within the diazotrophic community, potentially modifying primary productivity.

Changing nutrient stoichiometry affects phytoplankton production, DOP accumulation and dinitrogen fixation - a mesocosm experiment in the eastern tropical North Atlantic

NASA Astrophysics Data System (ADS)

Meyer, J.; Löscher, C. R.; Neulinger, S. C.; Reichel, A. F.; Loginova, A.; Borchard, C.; Schmitz, R. A.; Hauss, H.; Kiko, R.; Riebesell, U.

2016-02-01

Ocean deoxygenation due to climate change may alter redox-sensitive nutrient cycles in the marine environment. The productive eastern tropical North Atlantic (ETNA) upwelling region may be particularly affected when the relatively moderate oxygen minimum zone (OMZ) deoxygenates further and microbially driven nitrogen (N) loss processes are promoted. Consequently, water masses with a low nitrogen to phosphorus (N : P) ratio could reach the euphotic layer, possibly influencing primary production in those waters. Previous mesocosm studies in the oligotrophic Atlantic Ocean identified nitrate availability as a control of primary production, while a possible co-limitation of nitrate and phosphate could not be ruled out. To better understand the impact of changing N : P ratios on primary production and N2 fixation in the ETNA surface ocean, we conducted land-based mesocosm experiments with natural plankton communities and applied a broad range of N : P ratios (2.67-48). Silicic acid was supplied at 15 µmol L-1 in all mesocosms. We monitored nutrient drawdown, biomass accumulation and nitrogen fixation in response to variable nutrient stoichiometry. Our results confirmed nitrate to be the key factor determining primary production. We found that excess phosphate was channeled through particulate organic matter (POP) into the dissolved organic matter (DOP) pool. In mesocosms with low inorganic phosphate availability, DOP was utilized while N2 fixation increased, suggesting a link between those two processes. Interestingly this observation was most pronounced in mesocosms where nitrate was still available, indicating that bioavailable N does not necessarily suppress N2 fixation. We observed a shift from a mixed cyanobacteria-proteobacteria dominated active diazotrophic community towards a diatom-diazotrophic association of the Richelia-Rhizosolenia symbiosis. We hypothesize that a potential change in nutrient stoichiometry in the ETNA might lead to a general shift within the diazotrophic community, potentially influencing primary productivity and carbon export.

Experimental incubations elicit profound changes in community transcription in OMZ bacterioplankton.

PubMed

Stewart, Frank J; Dalsgaard, Tage; Young, Curtis R; Thamdrup, Bo; Revsbech, Niels Peter; Ulloa, Osvaldo; Canfield, Don E; Delong, Edward F

2012-01-01

Sequencing of microbial community RNA (metatranscriptome) is a useful approach for assessing gene expression in microorganisms from the natural environment. This method has revealed transcriptional patterns in situ, but can also be used to detect transcriptional cascades in microcosms following experimental perturbation. Unambiguously identifying differential transcription between control and experimental treatments requires constraining effects that are simply due to sampling and bottle enclosure. These effects remain largely uncharacterized for "challenging" microbial samples, such as those from anoxic regions that require special handling to maintain in situ conditions. Here, we demonstrate substantial changes in microbial transcription induced by sample collection and incubation in experimental bioreactors. Microbial communities were sampled from the water column of a marine oxygen minimum zone by a pump system that introduced minimal oxygen contamination and subsequently incubated in bioreactors under near in situ oxygen and temperature conditions. Relative to the source water, experimental samples became dominated by transcripts suggestive of cell stress, including chaperone, protease, and RNA degradation genes from diverse taxa, with strong representation from SAR11-like alphaproteobacteria. In tandem, transcripts matching facultative anaerobic gammaproteobacteria of the Alteromonadales (e.g., Colwellia) increased 4-13 fold up to 43% of coding transcripts, and encoded a diverse gene set suggestive of protein synthesis and cell growth. We interpret these patterns as taxon-specific responses to combined environmental changes in the bioreactors, including shifts in substrate or oxygen availability, and minor temperature and pressure changes during sampling with the pump system. Whether such changes confound analysis of transcriptional patterns may vary based on the design of the experiment, the taxonomic composition of the source community, and on the metabolic linkages between community members. These data highlight the impressive capacity for transcriptional changes within complex microbial communities, underscoring the need for caution when inferring in situ metabolism based on transcript abundances in experimental incubations.

Experimental Incubations Elicit Profound Changes in Community Transcription in OMZ Bacterioplankton

PubMed Central

Stewart, Frank J.; Dalsgaard, Tage; Young, Curtis R.; Thamdrup, Bo; Revsbech, Niels Peter; Ulloa, Osvaldo; Canfield, Don E.; DeLong, Edward F.

2012-01-01

Sequencing of microbial community RNA (metatranscriptome) is a useful approach for assessing gene expression in microorganisms from the natural environment. This method has revealed transcriptional patterns in situ, but can also be used to detect transcriptional cascades in microcosms following experimental perturbation. Unambiguously identifying differential transcription between control and experimental treatments requires constraining effects that are simply due to sampling and bottle enclosure. These effects remain largely uncharacterized for “challenging” microbial samples, such as those from anoxic regions that require special handling to maintain in situ conditions. Here, we demonstrate substantial changes in microbial transcription induced by sample collection and incubation in experimental bioreactors. Microbial communities were sampled from the water column of a marine oxygen minimum zone by a pump system that introduced minimal oxygen contamination and subsequently incubated in bioreactors under near in situ oxygen and temperature conditions. Relative to the source water, experimental samples became dominated by transcripts suggestive of cell stress, including chaperone, protease, and RNA degradation genes from diverse taxa, with strong representation from SAR11-like alphaproteobacteria. In tandem, transcripts matching facultative anaerobic gammaproteobacteria of the Alteromonadales (e.g., Colwellia) increased 4–13 fold up to 43% of coding transcripts, and encoded a diverse gene set suggestive of protein synthesis and cell growth. We interpret these patterns as taxon-specific responses to combined environmental changes in the bioreactors, including shifts in substrate or oxygen availability, and minor temperature and pressure changes during sampling with the pump system. Whether such changes confound analysis of transcriptional patterns may vary based on the design of the experiment, the taxonomic composition of the source community, and on the metabolic linkages between community members. These data highlight the impressive capacity for transcriptional changes within complex microbial communities, underscoring the need for caution when inferring in situ metabolism based on transcript abundances in experimental incubations. PMID:22615914

Seasonal monitoring of deep-sea megabenthos in Barkley Canyon cold seep by internet operated vehicle (IOV).

PubMed

Doya, Carolina; Chatzievangelou, Damianos; Bahamon, Nixon; Purser, Autun; De Leo, Fabio C; Juniper, S Kim; Thomsen, Laurenz; Aguzzi, Jacopo

2017-01-01

Knowledge of the processes shaping deep-sea benthic communities at seasonal scales in cold-seep environments is incomplete. Cold seeps within highly dynamic regions, such as submarine canyons, where variable current regimes may occur, are particularly understudied. Novel Internet Operated Vehicles (IOVs), such as tracked crawlers, provide new techniques for investigating these ecosystems over prolonged periods. In this study a benthic crawler connected to the NEPTUNE cabled infrastructure operated by Ocean Networks Canada was used to monitor community changes across 60 m2 of a cold-seep area of the Barkley Canyon, North East Pacific, at ~890 m depth within an Oxygen Minimum Zone (OMZ). Short video-transects were run at 4-h intervals during the first week of successive calendar months, over a 14 month period (February 14th 2013 to April 14th 2014). Within each recorded transect video megafauna abundances were computed and changes in environmental conditions concurrently measured. The responses of fauna to environmental conditions as a proxy of seasonality were assessed through analysis of abundances in a total of 438 video-transects (over 92 h of total footage). 7698 fauna individuals from 6 phyla (Cnidaria, Ctenophora, Arthropoda, Echinodermata, Mollusca, and Chordata) were logged and patterns in abundances of the 7 most abundant taxa (i.e. rockfish Sebastidae, sablefish Anoplopoma fimbria, hagfish Eptatretus stoutii, buccinids (Buccinoidea), undefined small crabs, ctenophores Bolinopsis infundibulum, and Scyphomedusa Poralia rufescens) were identified. Patterns in the reproductive behaviour of the grooved tanner crab (Chionnecetes tanneri) were also indicated. Temporal variations in biodiversity and abundance in megabenthic fauna was significantly influenced by variabilities in flow velocity flow direction (up or down canyon), dissolved oxygen concentration and month of study. Also reported here for the first time are transient mass aggregations of grooved tanner crabs through these depths of the canyon system, in early spring and likely linked to the crab's reproductive cycle.

Healing effects of Musa sapientum var. paradisiaca in diabetic rats with co-occurring gastric ulcer: cytokines and growth factor by PCR amplification

PubMed Central

2013-01-01

Background The present study evaluates the effects of extract of Musa sapientum fruit (MSE) on ulcer index, blood glucose level and gastric mucosal cytokines, TNF-α and IL-1β and growth factor, TGF-α (affected in diabetes and chronic ulcer) in acetic acid (AA)-induced gastric ulcer (GU) in diabetic (DR) rat. Methods MSE (100 mg/kg, oral), omeprazole (OMZ, 2.0 mg/kg, oral), insulin (INS, 4 U/kg, sc) or pentoxyphylline (PTX, 10 mg/kg, oral) were given once daily for 10 days in 14 days post-streptozotocin (60 mg/kg, intraperitoneal)-induced diabetic rats while, the normal/diabetic rats received CMC for the same period after induction of GU with AA. Ulcer index was calculated based upon the product of length and width (mm2/rat) of ulcers while, TNF-α, IL-1β and TGF-α were estimated in the gastric mucosal homogenate from the intact/ulcer region. Phytochemical screening and HPTLC analysis of MSE was done following standard procedures. Results An increase in ulcer index, TNF-α and IL-1β were observed in normal (NR)-AA rat compared to NR-normal saline rat, which were further increased in DR-AA rat while, treatments of DR-AA rat with MSE, OMZ, INS and PTX reversed them, more so with MSE and PTX. Significant increase in TGF-α was found in NR-AA rat which did not increase further in DR-AA rat. MSE and PTX tended to increase while, OMZ and INS showed little or no effect on TGF-α in AA-DR rat. Phytochemical screening of MSE showed the presence of saponins, flavonoids, glycosides, steroids and alkaloids and HPTLC analysis indicated the presence of eight active compounds. Conclusion MSE showed antidiabetic and better ulcer healing effects compared with OMZ (antiulcer) or INS (antidiabetic) in diabetic rat and could be more effective in diabetes with concurrent gastric ulcer. PMID:24192345

Three Essays In and Tests of Theoretical Urban Economics

NASA Astrophysics Data System (ADS)

Zhao, Weihua

This dissertation consists of three essays on urban economics. The three essays are related to urban spatial structure change, energy consumption, greenhouse gas emissions, and housing redevelopment. Chapter 1 answers the question: Does the classic Standard Urban Model still describe the growth of cities? Chapter 2 derives the implications of telework on urban spatial structure, energy consumption, and greenhouse gas emissions. Chapter 3 investigates the long run effects of minimum lot size zoning on neighborhood redevelopment. Chapter 1 identifies a new implication of the classic Standard Urban Model, the "unitary elasticity property (UEP)", which is the sum of the elasticity of central density and the elasticity of land area with respect to population change is approximately equal to unity. When this implication of the SUM is tested, it fits US cities fairly well. Further analysis demonstrates that topographic barriers and age of housing stock are the key factors explaining deviation from the UEP. Chapter 2 develops a numerical urban simulation model with households that are able to telework to investigate the urban form, congestion, energy consumption and greenhouse gas emission implications of telework. Simulation results suggest that by reducing transportation costs, telework causes sprawl, with associated longer commutes and consumption of larger homes, both of which increase energy consumption. Overall effects depend on who captures the gains from telework (workers versus firms), urban land use regulation such as height limits or greenbelts, and the fraction of workers participating in telework. The net effects of telework on energy use and GHG emissions are generally negligible. Chapter 3 applies dynamic programming to investigate the long run effects of minimum lot size zoning on neighborhood redevelopment. With numerical simulation, comparative dynamic results show that minimum lot size zoning can delay initial land conversion and slow down demolition and housing redevelopment. Initially, minimum lot size zoning is not binding. However, as city grows, it becomes binding and can effectively distort housing supply. It can lower both floor area ratio and residential density, and reduce aggregate housing supply. Overall, minimum lot size zoning can stabilize the path of structure/land ratios, housing service levels, structure density, and housing prices. In addition, minimum lot size zoning provides more incentive for developer to maintain the building, slow structure deterioration, and raise the minimum level of housing services provided over the life cycle of development.

Estimates of in-place oil shale of various grades in federal lands, Piceance Basin, Colorado

USGS Publications Warehouse

Mercier, Tracey J.; Johnson, Ronald C.; Brownfield, Michael E.

2010-01-01

The entire oil shale interval in the Piceance Basin is subdivided into seventeen “rich” and “lean” zones that were assessed separately. These zones are roughly time-stratigraphic units consisting of distinctive, laterally continuous sequences of oil shale beds that can be traced throughout much of the Piceance Basin. Several subtotals of the 1.5 trillion barrels total were calculated: (1) about 920 billion barrels (60 percent) exceed 15 gallons per ton (GPT); (2) about 352 billion barrels (23 percent) exceed 25 GPT; (3) more than one trillion barrels (70 percent) underlie Federally-managed lands; and (4) about 689 billion barrels (75 percent) of the 15 GPT total and about 284 billion barrels (19 percent) of the 25 GPT total are under Federal mineral (subsurface) ownership. These 15 and 25 GPT estimates include only those areas where the weighted average of an entire zone exceeds those minimum cutoffs. In areas where the entire zone does not meet the minimum criteria, some oil shale intervals of significant thicknesses could exist within the zone that exceed these minimum cutoffs. For example, a 30-ft interval within an oil shale zone might exceed 25 GPT but if the entire zone averages less than 25 GPT, these resources are not included in the 15 and 25 GPT subtotals, although they might be exploited in the future.

Correlation analysis of the optics of progressive addition lenses.

PubMed

Sheedy, James E

2004-05-01

To investigate the relations between selected key optical parameters and the sizes of the clear viewing areas of progressive addition lenses (PALs). The optics of 28 PALs (plano with +2.00 D add) currently on the market were measured with a Rotlex Class Plus lens analyzer. Horizontal cross sections were analyzed in 1 mm vertical steps with respect to the fitting cross. Distance, intermediate, and near viewing zone widths and areas were calculated from the measurements. The maximum amount of unwanted astigmatism, minimum zone width (0.50 DC limit), and maximum power rate in the corridor were also recorded for each lens. Correlation coefficients were determined for all relations. Each of the three viewing zone areas had a significant negative relation with the other (r of -0.4 to -0.8), indicating design tradeoff. Maximum power rate was significantly related to minimum zone width (r = -0.695), which was significantly related to maximum astigmatism (r = -0.616), but there was not a significant relation between maximum power rate and maximum astigmatism. Higher power rates and narrower minimum zones were significantly related to smaller intermediate and larger near zones (r = 0.4 to 0.9). Maximum astigmatism was related to distance zone width (r = 0.42) and to intermediate zone size (r = -0.4 to -0.56), but not significantly related to near viewing zone. Power rate and astigmatism each vary relatively uniformly across each lens. The fundamental relation appears to be between power rate and zone width, each of which is highly related to sizes of the intermediate and near viewing zones. The maximum amount of astigmatism is related to zone width, but not to maximum power rate. The amount of astigmatism is unrelated to the size of the near zone. The pattern of correlations between the optical and viewing zone parameters help identify the underlying optical relations of PALs.

Assessment of Energy Savings Potential from the Use of Demand Control Ventilation Systems in General Office Spaces in California

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hong, Tianzhen; Fisk, William J.

2009-07-08

Demand controlled ventilation (DCV) was evaluated for general office spaces in California. A medium size office building meeting the prescriptive requirements of the 2008 California building energy efficiency standards (CEC 2008) was assumed in the building energy simulations performed with the EnergyPlus program to calculate the DCV energy savings potential in five typical California climates. Three design occupancy densities and two minimum ventilation rates were used as model inputs to cover a broader range of design variations. The assumed values of minimum ventilation rates in offices without DCV, based on two different measurement methods, were 81 and 28 cfm per occupant. These rates are based on the co-author's unpublished analyses of data from EPA's survey of 100 U.S. office buildings. These minimum ventilation rates exceed the 15 to 20 cfm per person required in most ventilation standards for offices. The cost effectiveness of applying DCV in general office spaces was estimated via a life cycle cost analyses that considered system costs and energy cost reductions. The results of the energy modeling indicate that the energy savings potential of DCV is largest in the desert area of California (climate zone 14), followed by Mountains (climate zone 16), Central Valley (climate zone 12), North Coast (climate zone 3), and South Coast (climate zone 6). The results of the life cycle cost analysis show DCV is cost effective for office spaces if the typical minimum ventilation rates without DCV is 81 cfm per person, except at the low design occupancy of 10 people per 1000 ft{sup 2} in climate zones 3 and 6. At the low design occupancy of 10 people per 1000 ft{sup 2}, the greatest DCV life cycle cost savings is a net present value (NPV) ofmore » $$0.52/ft{sup 2} in climate zone 14, followed by $$0.32/ft{sup 2} in climate zone 16 and $$0.19/ft{sup 2} in climate zone 12. At the medium design occupancy of 15 people per 1000 ft{sup 2}, the DCV savings are higher with a NPV $$0.93/ft{sup 2} in climate zone 14, followed by $$0.55/ft{sup 2} in climate zone 16, $$0.46/ft{sup 2} in climate zone 12, $$0.30/ft{sup 2} in climate zone 3, $$0.16/ft{sup 2} in climate zone 3. At the high design occupancy of 20 people per 1000 ft{sup 2}, the DCV savings are even higher with a NPV $$1.37/ft{sup 2} in climate zone 14, followed by $$0.86/ft{sup 2} in climate zone 16, $$0.84/ft{sup 2} in climate zone 3, $$0.82/ft{sup 2} in climate zone 12, and $0.65/ft{sup 2} in climate zone 6. DCV was not found to be cost effective if the typical minimum ventilation rate without DCV is 28 cfm per occupant, except at high design occupancy of 20 people per 1000 ft{sup 2} in climate zones 14 and 16. Until the large uncertainties about the base case ventilation rates in offices without DCV are reduced, the case for requiring DCV in general office spaces will be a weak case.« less

The acceleration of dissolved cobalt's ecological stoichiometry due to biological uptake, remineralization, and scavenging in the Atlantic Ocean

NASA Astrophysics Data System (ADS)

Saito, Mak A.; Noble, Abigail E.; Hawco, Nicholas; Twining, Benjamin S.; Ohnemus, Daniel C.; John, Seth G.; Lam, Phoebe; Conway, Tim M.; Johnson, Rod; Moran, Dawn; McIlvin, Matthew

2017-10-01

The stoichiometry of biological components and their influence on dissolved distributions have long been of interest in the study of the oceans. Cobalt has the smallest oceanic inventory of inorganic micronutrients and hence is particularly vulnerable to influence by internal oceanic processes including euphotic zone uptake, remineralization, and scavenging. Here we observe not only large variations in dCo : P stoichiometry but also the acceleration of those dCo : P ratios in the upper water column in response to several environmental processes. The ecological stoichiometry of total dissolved cobalt (dCo) was examined using data from a US North Atlantic GEOTRACES transect and from a zonal South Atlantic GEOTRACES-compliant transect (GA03/3e and GAc01) by Redfieldian analysis of its statistical relationships with the macronutrient phosphate. Trends in the dissolved cobalt to phosphate (dCo : P) stoichiometric relationships were evident in the basin-scale vertical structure of cobalt, with positive dCo : P slopes in the euphotic zone and negative slopes found in the ocean interior and in coastal environments. The euphotic positive slopes were often found to accelerate towards the surface and this was interpreted as being due to the combined influence of depleted phosphate, phosphorus-sparing (conserving) mechanisms, increased alkaline phosphatase metalloenzyme production (a zinc or perhaps cobalt enzyme), and biochemical substitution of Co for depleted Zn. Consistent with this, dissolved Zn (dZn) was found to be drawn down to only 2-fold more than dCo, despite being more than 18-fold more abundant in the ocean interior. Particulate cobalt concentrations increased in abundance from the base of the euphotic zone to become ˜ 10 % of the overall cobalt inventory in the upper euphotic zone with high stoichiometric values of ˜ 400 µmol Co mol-1 P. Metaproteomic results from the Bermuda Atlantic Time-series Study (BATS) station found cyanobacterial isoforms of the alkaline phosphatase enzyme to be prevalent in the upper water column, as well as a sulfolipid biosynthesis protein indicative of P sparing. The negative dCo : P relationships in the ocean interior became increasingly vertical with depth, and were consistent with the sum of scavenging and remineralization processes (as shown by their dCo : P vector sums). Attenuation of the remineralization with depth resulted in the increasingly vertical dCo : P relationships. Analysis of particulate Co with particulate Mn and particulate phosphate also showed positive linear relationships below the euphotic zone, consistent with the presence and increased relative influence of Mn oxide particles involved in scavenging. Visualization of dCo : P slopes across an ocean section revealed hotspots of scavenging and remineralization, such as at the hydrothermal vents and below the oxygen minimum zone (OMZ) region, respectively, while that of an estimate of Co* illustrated stoichiometrically depleted values in the mesopelagic and deep ocean due to scavenging. This study provides insights into the coupling between the dissolved and particulate phase that ultimately creates Redfield stoichiometric ratios, demonstrating that the coupling is not an instantaneous process and is influenced by the element inventory and rate of exchange between phases. Cobalt's small water column inventory and the influence of external factors on its biotic stoichiometry can erode its limited inertia and result in an acceleration of the dissolved stoichiometry towards that of the particulate phase in the upper euphotic zone. As human use of cobalt grows exponentially with widespread adoption of lithium ion batteries, there is a potential to affect the limited biogeochemical inertia of cobalt and its resultant ecology in the oceanic euphotic zone.

Transition from the Sector Zone to the Unipolar Zone in the Heliosheath: Voyager 2 Magnetic Field Observations

NASA Technical Reports Server (NTRS)

Burlaga, L. F.; Ness, N. F.

2011-01-01

The magnetic polarity pattern observed by Voyager 2 (V2) evolved with time from a nearly equal mixture of positive and negative polarity sectors in the sector zone from 2007.00 to 2007.67 to nearly uniform positive polarity (magnetic fields directed away from the Sun) in the unipolar zone from 2009.6 to 2010.3. This change was caused by the decreasing latitudinal extent of the sector zone, when the minimum extent of the heliospheric current sheet moved northward toward the solar equator as the solar activity associated with solar cycle 23 decreased a minimum in 2010. In the heliosheath, the distribution of daily averages of the magnetic field strength B was lognormal in the sector zone from 2008.83 to 2009.57 and Gaussian in the unipolar zone from 2009.57 to 2010.27. The distribution of daily increments of B was a Tsallis distribution (q-Gaussian distribution) with q = 1.66 +/- 0.010 in the sector zone and . Gaussian (q = 1.01+/-0.29) in the unipolar zone. The unipolar region appears to be in a relatively undisturbed equilibrium state.

Experimental and Theoretical Study on Minimum Achievable Foil Thickness during Asymmetric Rolling

PubMed Central

Tang, Delin; Liu, Xianghua; Song, Meng; Yu, Hailiang

2014-01-01

Parts produced by microforming are becoming ever smaller. Similarly, the foils required in micro-machines are becoming ever thinner. The asymmetric rolling technique is capable of producing foils that are thinner than those produced by the conventional rolling technique. The difference between asymmetric rolling and conventional rolling is the ‘cross-shear’ zone. However, the influence of the cross-shear zone on the minimum achievable foil thickness during asymmetric rolling is still uncertain. In this paper, we report experiments designed to understand this critical influencing factor on the minimum achievable thickness in asymmetric rolling. Results showed that the minimum achievable thickness of rolled foils produced by asymmetric rolling with a rolling speed ratio of 1.3 can be reduced to about 30% of that possible by conventional rolling technique. Furthermore, the minimum achievable thickness during asymmetric rolling could be correlated to the cross-shear ratio, which, in turn, could be related to the rolling speed ratio. From the experimental results, a formula to calculate the minimum achievable thickness was established, considering the parameters cross-shear ratio, friction coefficient, work roll radius, etc. in asymmetric rolling. PMID:25203265

Solar-cycle Variations of Meridional Flows in the Solar Convection Zone Using Helioseismic Methods

NASA Astrophysics Data System (ADS)

Lin, Chia-Hsien; Chou, Dean-Yi

2018-06-01

The solar meridional flow is an axisymmetric flow in solar meridional planes, extending through the convection zone. Here we study its solar-cycle variations in the convection zone using SOHO/MDI helioseismic data from 1996 to 2010, including two solar minima and one maximum. The travel-time difference between northward and southward acoustic waves is related to the meridional flow along the wave path. Applying the ray approximation and the SOLA inversion method to the travel-time difference measured in a previous study, we obtain the meridional flow distributions in 0.67 ≤ r ≤ 0.96R ⊙ at the minimum and maximum. At the minimum, the flow has a three-layer structure: poleward in the upper convection zone, equatorward in the middle convection zone, and poleward again in the lower convection zone. The flow speed is close to zero within the error bar near the base of the convection zone. The flow distribution changes significantly from the minimum to the maximum. The change above 0.9R ⊙ shows two phenomena: first, the poleward flow speed is reduced at the maximum; second, an additional convergent flow centered at the active latitudes is generated at the maximum. These two phenomena are consistent with the surface meridional flow reported in previous studies. The change in flow extends all the way down to the base of the convection zone, and the pattern of the change below 0.9R ⊙ is more complicated. However, it is clear that the active latitudes play a role in the flow change: the changes in flow speed below and above the active latitudes have opposite signs. This suggests that magnetic fields could be responsible for the flow change.

40 CFR 265.278 - Unsaturated zone (zone of aeration) monitoring.

Code of Federal Regulations, 2012 CFR

2012-07-01

... soils nearby; this background monitoring must be conducted before or in conjunction with the monitoring... a minimum: (1) Soil monitoring using soil cores, and (2) Soil-pore water monitoring using devices... demonstrate in his unsaturated zone monitoring plan that: (1) The depth at which soil and soil-pore water...

40 CFR 265.278 - Unsaturated zone (zone of aeration) monitoring.

Code of Federal Regulations, 2011 CFR

2011-07-01

... soils nearby; this background monitoring must be conducted before or in conjunction with the monitoring... a minimum: (1) Soil monitoring using soil cores, and (2) Soil-pore water monitoring using devices... demonstrate in his unsaturated zone monitoring plan that: (1) The depth at which soil and soil-pore water...

40 CFR 265.278 - Unsaturated zone (zone of aeration) monitoring.

Code of Federal Regulations, 2010 CFR

2010-07-01

... soils nearby; this background monitoring must be conducted before or in conjunction with the monitoring... a minimum: (1) Soil monitoring using soil cores, and (2) Soil-pore water monitoring using devices... demonstrate in his unsaturated zone monitoring plan that: (1) The depth at which soil and soil-pore water...

40 CFR 265.278 - Unsaturated zone (zone of aeration) monitoring.

Code of Federal Regulations, 2014 CFR

2014-07-01

... soils nearby; this background monitoring must be conducted before or in conjunction with the monitoring... a minimum: (1) Soil monitoring using soil cores, and (2) Soil-pore water monitoring using devices... demonstrate in his unsaturated zone monitoring plan that: (1) The depth at which soil and soil-pore water...

40 CFR 265.278 - Unsaturated zone (zone of aeration) monitoring.

Code of Federal Regulations, 2013 CFR

2013-07-01

... soils nearby; this background monitoring must be conducted before or in conjunction with the monitoring... a minimum: (1) Soil monitoring using soil cores, and (2) Soil-pore water monitoring using devices... demonstrate in his unsaturated zone monitoring plan that: (1) The depth at which soil and soil-pore water...

Scheduling work zones in multi-modal networks phase 1: scheduling work zones in transportation service networks.

DOT National Transportation Integrated Search

2016-06-01

The purpose of this project is to study the optimal scheduling of work zones so that they have minimum negative impact (e.g., travel delay, gas consumption, accidents, etc.) on transport service vehicle flows. In this project, a mixed integer linear ...

Simulated effects of southern hemispheric wind changes on the Pacific oxygen minimum zone

NASA Astrophysics Data System (ADS)

Getzlaff, Julia; Dietze, Heiner; Oschlies, Andreas

2016-01-01

A coupled ocean biogeochemistry-circulation model is used to investigate the impact of observed past and anticipated future wind changes in the Southern Hemisphere on the oxygen minimum zone in the tropical Pacific. We consider the industrial period until the end of the 21st century and distinguish effects due to a strengthening of the westerlies from effects of a southward shift of the westerlies that is accompanied by a poleward expansion of the tropical trade winds. Our model results show that a strengthening of the westerlies counteracts part of the warming-induced decline in the global marine oxygen inventory. A poleward shift of the trade-westerlies boundary, however, triggers a significant decrease of oxygen in the tropical oxygen minimum zone. In a business-as-usual CO2 emission scenario, the poleward shift of the trade-westerlies boundary and warming-induced increase in stratification contribute equally to the expansion of suboxic waters in the tropical Pacific.

Trees and highway safety.

DOT National Transportation Integrated Search

2011-03-01

To minimize the severity of run-off-road collisions of vehicles with trees, departments of transportation (DOTs) : commonly establish clear zones for trees and other fixed objects. Caltrans clear zone on freeways is 30 feet : minimum (40 feet pref...

Generalized provisional seed zones for native plants

Treesearch

Andrew D. Bower; J. Bradley St.Clair; Vicky Erickson

2014-01-01

Deploying well-adapted and ecologically appropriate plant materials is a core component of successful restoration projects. We have developed generalized provisional seed zones that can be applied to any plant species in the United States to help guide seed movement. These seed zones are based on the intersection of high-resolution climatic data for winter minimum...

Bottom-water oxygenation and environmental change in Santa Monica Basin, southern California during the last 22 kyr

DOE Office of Scientific and Technical Information (OSTI.GOV)

Balestra, Barbara; Krupinksi, Nadine Quintana; Erhoina, Tzvetina

The Southern California Borderland (SCB) is a region that experiences strong natural variations in bottom water oxygen and pH. Here, we use marine sediments from the Santa Monica Basin (SMB) to reconstruct environmental conditions and changes in the basin's bottom water oxygenation from the Last Glacial Maximum (LGM) to present, and compare the records to the adjacent Santa Barbara Basin (SBB) and Santa Lucia Slope (SLS). High-resolution records of benthic foraminiferal oxygen and carbon isotopes (δ 18O and δ 13C), benthic foraminiferal assemblages, and bulk sedimentary organic matter geochemistry records exhibit major changes associated with late Quaternary millennial-scale global climatemore » oscillations. Our data show the dominance of low-oxygen benthic foraminifera assemblages during warm intervals, and assemblages representing higher dissolved oxygen during cooler intervals, as also seen in SBB and SLS. But, our record shows a stronger and longer-lasting oxygen minimum zone (OMZ) between the end of the Bølling-Allerød (B-A) and the Early Holocene (including the Younger Dryas) than at neighboring sites, indicated by dominance of Bolivina tumida (characteristic of major hypoxia) in the assemblage. The middle to late Holocene (from ~ 8.8 to 0 ka) had weaker hypoxia than the early Holocene, with assemblages mainly composed of Bolivina argentea and Uvigerina peregrina. The SMB remains mostly slightly low in oxygen throughout the studied interval, with differences in the degree of hypoxia relative to SBB and SLS (especially from the B-A to the Early Holocene) likely due to its greater depth and its more southern geographic position and therefore decreased exposure to North Pacific Intermediate Water current. Regional effects, such as changing intermediate water source and/or changing ventilation (oxygenation) of the intermediate water source, also affect SMB deep water. Our analysis utilizing parallel geochemical and micropaleontological records brings new insights into bottom water and climate conditions in SMB, indicating regional similarities and differences with adjacent basins, and provides insight into the causes for changes in bottom water oxygenation.« less

Bottom-water oxygenation and environmental change in Santa Monica Basin, southern California during the last 22 kyr

DOE PAGES

Balestra, Barbara; Krupinksi, Nadine Quintana; Erhoina, Tzvetina; ...

2017-09-29

The Southern California Borderland (SCB) is a region that experiences strong natural variations in bottom water oxygen and pH. Here, we use marine sediments from the Santa Monica Basin (SMB) to reconstruct environmental conditions and changes in the basin's bottom water oxygenation from the Last Glacial Maximum (LGM) to present, and compare the records to the adjacent Santa Barbara Basin (SBB) and Santa Lucia Slope (SLS). High-resolution records of benthic foraminiferal oxygen and carbon isotopes (δ 18O and δ 13C), benthic foraminiferal assemblages, and bulk sedimentary organic matter geochemistry records exhibit major changes associated with late Quaternary millennial-scale global climatemore » oscillations. Our data show the dominance of low-oxygen benthic foraminifera assemblages during warm intervals, and assemblages representing higher dissolved oxygen during cooler intervals, as also seen in SBB and SLS. But, our record shows a stronger and longer-lasting oxygen minimum zone (OMZ) between the end of the Bølling-Allerød (B-A) and the Early Holocene (including the Younger Dryas) than at neighboring sites, indicated by dominance of Bolivina tumida (characteristic of major hypoxia) in the assemblage. The middle to late Holocene (from ~ 8.8 to 0 ka) had weaker hypoxia than the early Holocene, with assemblages mainly composed of Bolivina argentea and Uvigerina peregrina. The SMB remains mostly slightly low in oxygen throughout the studied interval, with differences in the degree of hypoxia relative to SBB and SLS (especially from the B-A to the Early Holocene) likely due to its greater depth and its more southern geographic position and therefore decreased exposure to North Pacific Intermediate Water current. Regional effects, such as changing intermediate water source and/or changing ventilation (oxygenation) of the intermediate water source, also affect SMB deep water. Our analysis utilizing parallel geochemical and micropaleontological records brings new insights into bottom water and climate conditions in SMB, indicating regional similarities and differences with adjacent basins, and provides insight into the causes for changes in bottom water oxygenation.« less

Sulfur isotope change across the Early Mississippian K-O (Kinderhookian-Osagean) δ13C excursion

NASA Astrophysics Data System (ADS)

Maharjan, Dev; Jiang, Ganqing; Peng, Yongbo; Nicholl, Michael J.

2018-07-01

Paired carbonate associate sulfate (CAS) sulfur isotopes (δ34SCAS), pyrite sulfur isotopes (δ34SPY) and CAS oxygen isotopes (δ18OCAS) across the Early Mississippian K-O δ13C excursion are documented from two sections of a west-dipping carbonate ramp in the southern Great Basin, western U.S.A. A 4-6‰ positive δ34SCAS anomaly, accompanied by negative shifts in δ34SPY and δ18OCAS, is found within the K-O δ13C excursion. In the section with a broader δ13C excursion, Δ34S (Δ34 S =δ34SCAS-δ34SPY) increases from 15‰ to 45‰ and δ13Ccarb drops from 7‰ to 4‰ at the same stratigraphic interval. If this δ34SCAS anomaly represents a global phenomenon, the large magnitude (4-6‰) and short duration (shorter than that of δ13C) suggest an unusual pyrite burial event that expanded from sediments to the ocean water column. In this scenario, the areal and volumetric expansion of sulfate reduction and pyrite burial was likely triggered by abundantly available organic matter near the peak of the K-O δ13C excursion, during which organic carbon production and burial may have reached a maximum, thus substantially expanding the oxygen minimum zone (OMZ). Numerical simulations suggest that pyrite burial rates 2.5-5 times higher than that of the modern ocean followed by sulfide oxidation are required to produce the observed δ34SCAS anomaly in a sulfate-rich ([SO4] ≥28 mM) Early Mississippian ocean. Alternatively, the sulfur and CAS oxygen isotope anomalies may record local sulfur cycling in a foreland basin where changes in weathering input and bottom-water redox conditions in response to sea-level fall and cooling resulted in isotope changes. In both scenarios (either local or global), the integrated carbon, sulfur, and CAS-oxygen isotope data suggest a much more dynamic sulfur cycle across the K-O δ13C excursion than has been previously suggested.

Study on Crystallographic Orientation Effect on Surface Generation of Aluminum in Nano-cutting

NASA Astrophysics Data System (ADS)

Xu, Feifei; Fang, Fengzhou; Zhu, Yuanqing; Zhang, Xiaodong

2017-04-01

The material characteristics such as size effect are one of the most important factors that could not be neglected in cutting the material at nanoscale. The effects of anisotropic nature of single crystal materials in nano-cutting are investigated employing the molecular dynamics simulation. Results show that the size effect of the plastic deformation is based on different plastic carriers, such as the twin, stacking faults, and dislocations. The minimum uncut chip thickness is dependent on cutting direction, where even a negative value is obtained when the cutting direction is {110}<001>. It also determines the material deformation and removal mechanism (e.g., shearing, extruding, and rubbing mechanism) with a decrease in uncut chip thickness. When material is deformed by shearing, the primary shearing zone expands from the stagnation point or the tip of stagnation zone. When a material is deformed by extruding and rubbing, the primary deformation zone almost parallels to the cutting direction and expands from the bottom of the cutting edge merging with the tertiary deformation zone. The generated surface quality relates to the crystallographic orientation and the minimum uncut chip thickness. The cutting directions of {110}<001>, {110}<1-10>, and {111}<1-10>, whose minimum uncut chip thickness is relatively small, have better surface qualities compared to the other cutting direction.

Study on Crystallographic Orientation Effect on Surface Generation of Aluminum in Nano-cutting.

PubMed

Xu, Feifei; Fang, Fengzhou; Zhu, Yuanqing; Zhang, Xiaodong

2017-12-01

The material characteristics such as size effect are one of the most important factors that could not be neglected in cutting the material at nanoscale. The effects of anisotropic nature of single crystal materials in nano-cutting are investigated employing the molecular dynamics simulation. Results show that the size effect of the plastic deformation is based on different plastic carriers, such as the twin, stacking faults, and dislocations. The minimum uncut chip thickness is dependent on cutting direction, where even a negative value is obtained when the cutting direction is {110}<001>. It also determines the material deformation and removal mechanism (e.g., shearing, extruding, and rubbing mechanism) with a decrease in uncut chip thickness. When material is deformed by shearing, the primary shearing zone expands from the stagnation point or the tip of stagnation zone. When a material is deformed by extruding and rubbing, the primary deformation zone almost parallels to the cutting direction and expands from the bottom of the cutting edge merging with the tertiary deformation zone. The generated surface quality relates to the crystallographic orientation and the minimum uncut chip thickness. The cutting directions of {110}<001>, {110}<1-10>, and {111}<1-10>, whose minimum uncut chip thickness is relatively small, have better surface qualities compared to the other cutting direction.

40 CFR 61.356 - Recordkeeping requirements.

Code of Federal Regulations, 2010 CFR

2010-07-01

... test protocol and the means by which sampling variability and analytical variability were accounted for... also establish the design minimum and average temperature in the combustion zone and the combustion... the design minimum and average temperatures across the catalyst bed inlet and outlet. (C) For a boiler...

40 CFR 63.1257 - Test methods and compliance procedures.

Code of Federal Regulations, 2013 CFR

2013-07-01

... the design minimum and average flame zone temperatures and combustion zone residence time; and shall... establish the design exhaust vent stream organic compound concentration level, adsorption cycle time, number... regeneration cycle, design carbon bed temperature after regeneration, design carbon bed regeneration time, and...

40 CFR 63.1257 - Test methods and compliance procedures.

Code of Federal Regulations, 2014 CFR

2014-07-01

... the design minimum and average flame zone temperatures and combustion zone residence time; and shall... establish the design exhaust vent stream organic compound concentration level, adsorption cycle time, number... regeneration cycle, design carbon bed temperature after regeneration, design carbon bed regeneration time, and...

Using U-Th-Pb petrochronology to determine rates of ductile thrusting: Time windows into the Main Central Thrust, Sikkim Himalaya

NASA Astrophysics Data System (ADS)

Mottram, Catherine M.; Parrish, Randall R.; Regis, Daniele; Warren, Clare J.; Argles, Tom W.; Harris, Nigel B. W.; Roberts, Nick M. W.

2015-07-01

Quantitative constraints on the rates of tectonic processes underpin our understanding of the mechanisms that form mountains. In the Sikkim Himalaya, late structural doming has revealed time-transgressive evidence of metamorphism and thrusting that permit calculation of the minimum rate of movement on a major ductile fault zone, the Main Central Thrust (MCT), by a novel methodology. U-Th-Pb monazite ages, compositions, and metamorphic pressure-temperature determinations from rocks directly beneath the MCT reveal that samples from 50 km along the transport direction of the thrust experienced similar prograde, peak, and retrograde metamorphic conditions at different times. In the southern, frontal edge of the thrust zone, the rocks were buried to conditions of 550°C and 0.8 GPa between 21 and 18 Ma along the prograde path. Peak metamorphic conditions of 650°C and 0.8-1.0 GPa were subsequently reached as this footwall material was underplated to the hanging wall at 17-14 Ma. This same process occurred at analogous metamorphic conditions between 18-16 Ma and 14.5-13 Ma in the midsection of the thrust zone and between 13 Ma and 12 Ma in the northern, rear edge of the thrust zone. Northward younging muscovite 40Ar/39Ar ages are consistently 4 Ma younger than the youngest monazite ages for equivalent samples. By combining the geochronological data with the >50 km minimum distance separating samples along the transport axis, a minimum average thrusting rate of 10 ± 3 mm yr-1 can be calculated. This provides a minimum constraint on the amount of Miocene India-Asia convergence that was accommodated along the MCT.

Universal time dependence of nighttime F region densities at high latitudes

NASA Technical Reports Server (NTRS)

De La Beaujardiere, O.; Wickwar, V. B.; Caudal, G.; Holt, J. M.; Craven, J. D.; Frank, L. A.; Brace, L. H.

1985-01-01

Coincident auroral-zone experiments using three incoherent-scatter radars at widely spaced longitudes are reported. The observational results demonstrate that, during the night, the F layer electron density is strongly dependent on the longitude of the observing site. Ionization patches were observed in the nighttime F region from the Chatanika and EISCAT radars, while densities observed from the Millstone radar were substantially smaller. The electron density within these maxima is larger at EISCAT than at Chatanika. When observed in the midnight sector auroral zone, these densities had a peak density at a high altitude of 360-475 km. The density was maximum when EISCAT was in the midnight sector and minimum when Millstone was in the midnight sector. A minimum in insolation in the auroral zone occurs at the UT when Millstone is in the midnight sector.

Characterization and impact of "dead-zone" eddies in the tropical Northeast Atlantic Ocean

NASA Astrophysics Data System (ADS)

Schuette, Florian; Karstensen, Johannes; Krahmann, Gerd; Hauss, Helena; Fiedler, Björn; Brandt, Peter; Visbeck, Martin; Körtzinger, Arne

2016-04-01

Localized open-ocean low-oxygen dead-zones in the tropical Northeast Atlantic are recently discovered ocean features that can develop in dynamically isolated water masses within cyclonic eddies (CE) and anticyclonic modewater eddies (ACME). Analysis of a comprehensive oxygen dataset obtained from gliders, moorings, research vessels and Argo floats shows that eddies with low oxygen concentrations at 50-150 m depths can be found in surprisingly high numbers and in a large area (from about 5°N to 20°N, from the shelf at the eastern boundary to 30°W). Minimum oxygen concentrations of about 9 μmol/kg in CEs and close to anoxic concentrations (< 1 μmol/kg) in ACMEs were observed. In total, 495 profiles with oxygen concentrations below the minimum background concentration of 40 μmol/kg could be associated with 27 independent "dead-zone" eddies (10 CEs; 17 ACMEs). The low oxygen concentration right beneath the mixed layer has been attributed to the combination of high productivity in the surface waters of the eddies and the isolation of the eddies' cores. Indeed eddies of both types feature a cold sea surface temperature anomaly and enhanced chlorophyll concentrations in their center. The oxygen minimum is located in the eddy core beneath the mixed layer at around 80 m depth. The mean oxygen anomaly between 50 to 150 m depth for CEs (ACMEs) is -49 (-81) μmol/kg. Eddies south of 12°N carry weak hydrographic anomalies in their cores and seem to be generated in the open ocean away from the boundary. North of 12°N, eddies of both types carry anomalously low salinity water of South Atlantic Central Water origin from the eastern boundary upwelling region into the open ocean. This points to an eddy generation near the eastern boundary. A conservative estimate yields that around 5 dead-zone eddies (4 CEs; 1 ACME) per year entering the area north of 12°N between the Cap Verde Islands and 19°W. The associated contribution to the oxygen budget of the shallow oxygen minimum zone in that area is about -10.3 (-3.0) μmol/kg/yr for CEs (ACMEs). The consumption within these eddies represents an essential part of the total consumption in the open tropical Northeast Atlantic Ocean and might be partly responsible for the formation of the shallow oxygen minimum zone.

40 CFR 146.83 - Minimum criteria for siting.

Code of Federal Regulations, 2012 CFR

2012-07-01

... or fractures and of sufficient areal extent and integrity to contain the injected carbon dioxide... without initiating or propagating fractures in the confining zone(s). (b) The Director may require owners... vertical fluid movement, are free of faults and fractures that may interfere with containment, allow for...

40 CFR 146.83 - Minimum criteria for siting.

Code of Federal Regulations, 2014 CFR

2014-07-01

... or fractures and of sufficient areal extent and integrity to contain the injected carbon dioxide... without initiating or propagating fractures in the confining zone(s). (b) The Director may require owners... vertical fluid movement, are free of faults and fractures that may interfere with containment, allow for...

40 CFR 146.83 - Minimum criteria for siting.

Code of Federal Regulations, 2013 CFR

2013-07-01

... or fractures and of sufficient areal extent and integrity to contain the injected carbon dioxide... without initiating or propagating fractures in the confining zone(s). (b) The Director may require owners... vertical fluid movement, are free of faults and fractures that may interfere with containment, allow for...

40 CFR 146.83 - Minimum criteria for siting.

Code of Federal Regulations, 2011 CFR

2011-07-01

... or fractures and of sufficient areal extent and integrity to contain the injected carbon dioxide... without initiating or propagating fractures in the confining zone(s). (b) The Director may require owners... vertical fluid movement, are free of faults and fractures that may interfere with containment, allow for...

40 CFR 61.356 - Recordkeeping requirements.

Code of Federal Regulations, 2011 CFR

2011-07-01

... also establish the design minimum and average temperature in the combustion zone and the combustion... temperatures, combustion zone residence time, and description of method and location where the vent stream is... control device are not operated as designed including all periods and the duration when: (i) Any valve car...

The effect of terrain slope on firefighter safety zone effectiveness

Treesearch

Bret Butler; J. Forthofer; K. Shannon; D. Jimenez; D. Frankman

2010-01-01

The current safety zone guidelines used in the US were developed based on the assumption that the fire and safety zone were located on flat terrain. The minimum safe distance for a firefighter to be from a flame was calculated as that corresponding to a radiant incident energy flux level of 7.0kW-m-2. Current firefighter safety guidelines are based on the assumption...

CO2 concentration and occupancy density in the critical zones served by the VAV system

NASA Astrophysics Data System (ADS)

Etoua Evina, Ghislaine; Kajl, Stanislaw; Lamarche, Louis; Beltran-Galindo, Javier

2017-11-01

This article presents the results obtained from monitoring a VAV system with highly diversified zone occupancy density are presented in the article. The investigated VAV system meets the load for 72 zones (68 perimeters and 4 interiors) consisting of classrooms, offices, conference rooms, etc. with highly diversified occupancy densities from 1.875 to 2.5 m2/person for the classrooms and from 10 to 15 m2/person for the offices. The monitoring shows that the CO2 concentration can exceed the set point in the critical rooms. Simulation results are also presented in the article to show that it is often impossible to adjust the operation of such VAV systems because the adjusted System Outdoor Air Fractions, % OA, can reach 100% even where the zone CO2 concentration is not respected. The presented monitoring and simulation results were obtained in the winter, with the VAV system operating at partial load and with the minimum outdoor air flowrate required by the economizer system. As shown in the article, to respect the zone set point CO2 concentration in such period, the VAV system must operate mostly at a %OA equal to 100% instead of its minimum value. To circumvent this, the supply zone air flow rate may have to be designed taking into account the CO2 concentration resulting from the critical zones occupancy density.

23 CFR 630.1014 - Implementation.

Code of Federal Regulations, 2010 CFR

2010-04-01

... PRECONSTRUCTION PROCEDURES Work Zone Safety and Mobility § 630.1014 Implementation. Each State shall work in partnership with the FHWA in the implementation of its policies and procedures to improve work zone safety and mobility. At a minimum, this shall involve an FHWA review of conformance of the State's policies and...

47 CFR 73.610 - Minimum distance separations between stations.

Code of Federal Regulations, 2010 CFR

2010-10-01

... they fail to comply with the requirements specified in paragraphs (b), (c) and (d) of this section... separation. (c) Minimum allotment and station adjacent channel separations applicable to all zones: (1... pairs of channels (see § 73.603(a)). (d) In addition to the requirements of paragraphs (a), (b) and (c...

Performance of an airborne imaging 92/183 GHz radiometer during the Bering Sea Marginal Ice Zone Experiment (MIZEX-WEST)

NASA Technical Reports Server (NTRS)

Gagliano, J. A.; Mcsheehy, J. J.; Cavalieri, D. J.

1983-01-01

An airborne imaging 92/183 GHz radiometer was recently flown onboard NASA's Convair 990 research aircraft during the February 1983 Bering Sea Marginal Ice Zone Experiment (MIZEX-WEST). The 92 GHz portion of the radiometer was used to gather ice signature data and to generate real-time millimeter wave images of the marginal ice zone. Dry atmospheric conditions in the Arctic resulted in good surface ice signature data for the 183 GHz double sideband (DSB) channel situated + or - 8.75 GHz away from the water vapor absorption line. The radiometer's beam scanner imaged the marginal ice zone over a + or - 45 degrees swath angle about the aircraft nadir position. The aircraft altitude was 30,000 feet (9.20 km) maximum and 3,000 feet (0.92 km) minimum during the various data runs. Calculations of the minimum detectable target (ice) size for the radiometer as a function of aircraft altitude were performed. In addition, the change in the atmospheric attenuation at 92 GHz under varying weather conditions was incorporated into the target size calculations. A radiometric image of surface ice at 92 GHz in the marginal ice zone is included.

A dissolved cobalt plume in the oxygen minimum zone of the eastern tropical South Pacific

NASA Astrophysics Data System (ADS)

Hawco, Nicholas J.; Ohnemus, Daniel C.; Resing, Joseph A.; Twining, Benjamin S.; Saito, Mak A.

2016-10-01

Cobalt is a nutrient to phytoplankton, but knowledge about its biogeochemical cycling is limited, especially in the Pacific Ocean. Here, we report sections of dissolved cobalt and labile dissolved cobalt from the US GEOTRACES GP16 transect in the South Pacific. The cobalt distribution is closely tied to the extent and intensity of the oxygen minimum zone in the eastern South Pacific with highest concentrations measured at the oxycline near the Peru margin. Below 200 m, remineralization and circulation produce an inverse relationship between cobalt and dissolved oxygen that extends throughout the basin. Within the oxygen minimum zone, elevated concentrations of labile cobalt are generated by input from coastal sources and reduced scavenging at low O2. As these high cobalt waters are upwelled and advected offshore, phytoplankton export returns cobalt to low-oxygen water masses underneath. West of the Peru upwelling region, dissolved cobalt is less than 10 pM in the euphotic zone and strongly bound by organic ligands. Because the cobalt nutricline within the South Pacific gyre is deeper than in oligotrophic regions in the North and South Atlantic, cobalt involved in sustaining phytoplankton productivity in the gyre is heavily recycled and ultimately arrives from lateral transport of upwelled waters from the eastern margin. In contrast to large coastal inputs, atmospheric deposition and hydrothermal vents along the East Pacific Rise appear to be minor sources of cobalt. Overall, these results demonstrate that oxygen biogeochemistry exerts a strong influence on cobalt cycling.

BMPs for silvicultural chemicals

Treesearch

J. L. Michael

2002-01-01

Silvicultural chemicals include fertilizers and pesticides applied for forest management. All states East of the Rockies have at least some form of voluntary silvicultural chemical BMPs (SCBMPs) and it is widely accepted that these BMPs effect some protection of water quality. All SCBWs recommend a minimum width zone (streamside management zone or SMZ) on each side of...

49 CFR 222.35 - What are the minimum requirements for quiet zones?

Code of Federal Regulations, 2011 CFR

2011-10-01

... within a single political jurisdiction shall be separated by at least one public highway-rail grade... include grade crossings on a segment of rail line crossing more than one political jurisdiction. (b... be credited in calculating the Quiet Zone Risk Index. (c) Advance warning signs. (1) Each highway...

49 CFR 222.35 - What are the minimum requirements for quiet zones?

Code of Federal Regulations, 2010 CFR

2010-10-01

... within a single political jurisdiction shall be separated by at least one public highway-rail grade... include grade crossings on a segment of rail line crossing more than one political jurisdiction. (b... be credited in calculating the Quiet Zone Risk Index. (c) Advance warning signs. (1) Each highway...

40 CFR 63.1365 - Test methods and initial compliance procedures.

Code of Federal Regulations, 2012 CFR

2012-07-01

... temperature of 760 °C, the design evaluation must document that these conditions exist. (ii) For a combustion... autoignition temperature of the organic HAP, must consider the vent stream flow rate, and must establish the design minimum and average temperature in the combustion zone and the combustion zone residence time. (B...

40 CFR 63.1365 - Test methods and initial compliance procedures.

Code of Federal Regulations, 2010 CFR

2010-07-01

... temperature of 760 °C, the design evaluation must document that these conditions exist. (ii) For a combustion... autoignition temperature of the organic HAP, must consider the vent stream flow rate, and must establish the design minimum and average temperature in the combustion zone and the combustion zone residence time. (B...

40 CFR 63.1365 - Test methods and initial compliance procedures.

Code of Federal Regulations, 2011 CFR

2011-07-01

... temperature of 760 °C, the design evaluation must document that these conditions exist. (ii) For a combustion... autoignition temperature of the organic HAP, must consider the vent stream flow rate, and must establish the design minimum and average temperature in the combustion zone and the combustion zone residence time. (B...

40 CFR 63.1365 - Test methods and initial compliance procedures.

Code of Federal Regulations, 2014 CFR

2014-07-01

... temperature of 760 °C, the design evaluation must document that these conditions exist. (ii) For a combustion... autoignition temperature of the organic HAP, must consider the vent stream flow rate, and must establish the design minimum and average temperature in the combustion zone and the combustion zone residence time. (B...

What do parameterized Om(z) diagnostics tell us in light of recent observations?

NASA Astrophysics Data System (ADS)

Qi, Jing-Zhao; Cao, Shuo; Biesiada, Marek; Xu, Teng-Peng; Wu, Yan; Zhang, Si-Xuan; Zhu, Zong-Hong

2018-06-01

In this paper, we propose a new parametrization for Om(z) diagnostics and show how the most recent and significantly improved observations concerning the H(z) and SN Ia measurements can be used to probe the consistency or tension between the ΛCDM model and observations. Our results demonstrate that H 0 plays a very important role in the consistency test of ΛCDM with H(z) data. Adopting the Hubble constant priors from Planck 2013 and Riess, one finds considerable tension between the current H(z) data and ΛCDM model and confirms the conclusions obtained previously by others. However, with the Hubble constant prior taken from WMAP9, the discrepancy between H(z) data and ΛCDM disappears, i.e., the current H(z) observations still support the cosmological constant scenario. This conclusion is also supported by the results derived from the Joint Light-curve Analysis (JLA) SN Ia sample. The best-fit Hubble constant from the combination of H(z)+JLA ({H}0={68.81}-1.49+1.50 km s‑1 Mpc‑1) is very consistent with results derived both by Planck 2013 and WMAP9, but is significantly different from the recent local measurement by Riess.

47 CFR 27.303 - Upper 700 MHz commercial and public safety coordination zone.

Code of Federal Regulations, 2011 CFR

2011-10-01

... safety coordinator. (1) The description must include, at a minimum; (i) The frequency or frequencies on... 47 Telecommunication 2 2011-10-01 2011-10-01 false Upper 700 MHz commercial and public safety... Rules for WCS § 27.303 Upper 700 MHz commercial and public safety coordination zone. (a) General. CMRS...

Euphausia mucronata: A keystone herbivore and prey of the Humboldt Current System

NASA Astrophysics Data System (ADS)

Antezana, Tarsicio

2010-04-01

Euphausiids are important components of many ecosystems, especially in productive regions of temperate and high latitudes. The present paper makes the case that E. mucronata plays a keystone role in the food web of the Humboldt Current System (HCS) based on a synthesis of new and published data supporting its potential role as a primary grazer, as well as a principal prey for upper trophic level fish. E. mucronata is an endemic species, concentrated in the coastal upwelling belt of the HCS, with morpho-physiological adaptations to vertically migrate into the Oxygen Minimum Zone (OMZ). Within the 100-km coastal belt of the HCS it accounts for ca. 50% of the meso zooplankton wet weight in winter. In the mixed layer, it is a herbivore with high night ingestion rates (612.2 ng Chl eq ind -1 h -1 or 1013.9 μg C ind -1 d -1, in winter), and accounted for a 19.3% impact on primary production in winter, at an intermediate population abundance (3.8 ind m -3). At higher abundances (50 ind m -3) equivalent to swarms, impact on primary production could reach 254%. Additionally E. mucronata is a common prey of numerous upper trophic level predators. The diet of jack mackerel ( Trachurus murphyi) off central Chile (34-39°S) indicates a striking dependence on E. mucronata prey (average of 75% of stomach content in weight). The fishing season off central Chile extended from austral fall (March-April) and continued at least until the end of austral winter (September). The average daily ration of jack mackerel was 17.4 g, which is equivalent to 2.3% of fish body weight per day. The total E. mucronata consumed in 1991 by the landed population of fish (3.7 million tons yr -1) amounted to 23.2 million tons yr -1. The total estimated population of jack mackerel that year (17.6 million tons) would have consumed ca. 110.2 million tons of E. mucronata. Based on stomach contents, consumption of E. mucronata by other nektonic predators off Chile and off Peru is also outstanding. Four different food web scenarios are offered for the northern and southern sectors of the HCS, according to regime shifts of small pelagics such as anchovy and jack mackerel, under the assumption that E. mucronata is a keystone link.

Changes in N:P stoichiometry influence taxonomic composition and nutritional quality of phytoplankton in the Peruvian upwelling

NASA Astrophysics Data System (ADS)

Hauss, Helena; Franz, Jasmin M. S.; Sommer, Ulrich

2012-10-01

Inorganic dissolved macronutrient (nitrogen, N, and phosphorus, P) supply to surface waters in the eastern tropical South Pacific is influenced by expanding oxygen minimum zones, since N loss occurs due to microbial processes under anoxic conditions while P is increasingly released from the shelf sediments. To investigate the impact of decreasing N:P supply ratios in the Peruvian Upwelling, we conducted nutrient manipulation experiments using a shipboard mesocosm setup with a natural phytoplankton community. In a first experiment, either N or P or no nutrients were added with mesozooplankton present or absent. In a second experiment, initial nutrient concentrations were adjusted to four N:P ratios ranging from 2.5 to 16 using two "high N" and two "high P" levels in combination (i.e., + N, + P, + N and P, no addition). Over six and seven days, respectively, microalgal biomass development as well as nutrient uptake was monitored. Phytoplankton biomass strongly responded to N addition, in both mesozooplankton-grazed and not grazed treatments. The developing diatom bloom in the "high N" exceeded that in the "low N" treatments by a factor of two. No modulation of the total biomass by P-addition was observed, however, species-specific responses were more variable. Notably, some organisms were able to benefit from low N:P fertilization ratios, especially Heterosigma sp. and Phaeocystis globosa which are notorious for forming blooms that are toxic or inadequate for mesozooplankton nutrition. After the decline of the diatom bloom, the relative contribution of unsaturated fatty acid to the lipid content of seston was positively correlated to diatom biomass in the peak bloom, indicating that positive effects of diatom blooms on food quality of the protist community to higher trophic levels remain even after the phytoplankton biomass was incorporated by grazers. Our results indicate an overall N-limitation of the system, especially in the case of dominating diatoms, which were able to immediately utilize the available nitrate (within two days) and develop a biomass maximum within three days of incubation. After the decline of diatom biomass, detection of the cyanobacterial marker pigment aphanizophyll indicated the occurrence of diazotrophs, especially in those enclosures initially provided with high N supply. This was surprising, as diazotrophs are thought to play a role in compensating to some extent the N deficit above OMZs in the succession of phytoplankton after an upwelling event.

Towards a definition of the "practical" epileptogenic zone: a case of epilepsy with dual pathology.

PubMed

Chassagnon, Serge; Valenti, Maria Paola; Sabourdy, Cécile; Esposito, Philippe; Kehrli, Pierre; Arzimanoglou, Alexis; Ryvlin, Philippe; Kahane, Philippe; Hirsch, Edouard

2006-08-01

Presurgical evaluation for patients with drug-resistant epilepsy requires the definition of various zones that have a variable spatial relationship with the epileptogenic zone. All the available methods to directly measure the actual seizure-onset zone and to define "the minimum amount of cortical tissue that must be resected to produce seizure-freedom" have significant limitations. We report on the case of a patient with dual pathology (hippocampal sclerosis and a post-traumatic scar) and discuss the contribution of the various presurgical investigations that led to surgery and seizure-freedom.

Ocean Profile Measurements During the Seasonal Ice Zone Reconnaissance Surveys Ocean Profiles

DTIC Science & Technology

2017-01-01

repeated ocean, ice, and atmospheric measurements across the Beaufort-Chukchi sea seasonal sea ice zone (SIZ) utilizing US Coast Guard Arctic Domain...contributing to the rapid decline in summer ice extent that has occurred in recent years. The SIZ is the region between maximum winter sea ice extent and...minimum summer sea ice extent. As such, it contains the full range of positions of the marginal ice zone (MIZ) where sea ice interacts with open water

33 CFR 165.773 - Security Zone; Escorted Vessels in Captain of the Port Zone Jacksonville, Florida.

Code of Federal Regulations, 2010 CFR

2010-07-01

... enforcement agency assets clearly identifiable by lights, vessel markings, or with agency insignia as follows...) When escorted vessels are moored, dayboards or other visual indications such as lights or buoys may be... proceeding at minimum safe speed if it is: (1) On a plane; (2) In the process of coming up onto or coming off...

33 CFR 165.773 - Security Zone; Escorted Vessels in Captain of the Port Zone Jacksonville, Florida.

Code of Federal Regulations, 2011 CFR

2011-07-01

... enforcement agency assets clearly identifiable by lights, vessel markings, or with agency insignia as follows...) When escorted vessels are moored, dayboards or other visual indications such as lights or buoys may be... proceeding at minimum safe speed if it is: (1) On a plane; (2) In the process of coming up onto or coming off...

Extent of Implementation of Minimum Standards of Basic Education for the Realisation of the Second Millennium Development Goal in Bayelsa State

ERIC Educational Resources Information Center

Ogochukwu, Emeka; Gbendu, Olaowei Godiva

2015-01-01

The study was carried out in Salga Education Zone of Bayelsa State specifically to determine the extent of implementation of the minimum standards for basic education in order to ensure the realization of the second millennium development goal. The study adopted the descriptive research design. The population of the study comprised of all the…

Feeding ecology of the copepod Lucicutia aff. L. grandis near the lower interface of the Arabian Sea oxygen minimum zone

NASA Astrophysics Data System (ADS)

Gowing, Marcia M.; Wishner, Karen F.

Feeding ecology of the calanoid copepod Lucicutia aff. L. grandis collected in the Arabian Sea at one station during the Spring Intermonsoon and during the Southwest Monsoon of 1995 was studied with transmission electron microscopy of gut-contents. Highest abundances of these animals occurred from ˜400 to 1100 m, near the lower interface of the oxygen minimum zone and at the inflection point where oxygen starts to increase. We expected that their gut-contents would include particles and cells that had sunk relatively undegraded from surface waters as well as those from within the oxygen minimum zone, and that gut-contents would differ between the Spring Intermonsoon and the more productive SW Monsoon. Overall, in both seasons Lucicutia aff. L. grandis was omnivorous, and consumed a variety of detrital particles, prokaryotic and eukaryotic autotrophs, gram-negative bacteria including metal-precipitating bacteria, aggregates of probable gram-positive bacteria, microheterotrophs, virus-like particles and large virus-like particles, as well as cuticle and cnidarian tissue. Few significant differences in types of food consumed were seen among life stages within or among various depth zones. Amorphous, unidentifiable material was significantly more abundant in guts during the Spring Intermonsoon than during the late SW Monsoon, and recognizable cells made up a significantly higher portion of gut-contents during the late SW Monsoon. This is consistent with the Intermonsoon as a time when organic material is considerably re-worked by the surface water microbial loop before leaving the euphotic zone. In both seasons Lucicutia aff. L. grandis had consumed what appeared to be aggregates of probable gram-positive bacteria, similar to those we had previously found in gut-contents of several species of zooplankton from the oxygen minimum zone in the eastern tropical Pacific. By intercepting sinking material, populations of Lucicutia aff. L. grandis act as a filter for carbon sinking to the sea floor. They also modify sinking carbon in several ways: enhancing pelagic-abyssal coupling of carbon from cyanobacteria, eliminating part of the deep-sea microbial loop by direct consumption of bacterial aggregates, and redistributing particulate manganese and iron from association with suspended cells or aggregates to containment in rapidly sinking fecal pellets. Lucicutia aff. L. grandis can be viewed as representative of deep-dwelling detritivorous mesozooplankton. Assessing the magnitude of the effects of such organisms on carbon flux in the Arabian Sea will require data on feeding rates.

Weldability evaluation of high tensile plates using GMAW process

NASA Astrophysics Data System (ADS)

Datta, R.; Mukerjee, D.; Rohira, K. L.; Veeraraghavan, R.

1999-08-01

High tensile plates, SAILMA-450 high impact (HI) (yield strength, 45 kg/mm2 minimum; ultimate tensile strength, 57 kg/mm2 minimum; elongation, 19% minimum; Charpy impact energy 2.0 kg.m at -20 °C minimum) were successfully developed at the Steel Authority of India Ltd., up to 32 mm plate thickness. Since then the steel has been extensively used for the fabrication of impellers, bridges, excavators, and mining machineries, where welding is an important processing step. The present study deals with the weldability properties of SAILMA-450 HI plates employing the gas metal arc welding process and carbon dioxide gas. Implant and elastic restraint cracking tests were conducted to assess the cold cracking resistance of the weld joint under different welding conditions. The static fatigue limit values were found to be in excess of minimum specified yield strength at higher heat input levels (9.4 and 13.0 kJ/cm), indicating adequate cold cracking resistance. The critical restraint intensities, K cr, were found to vary between 720 and 1280 kg/mm2, indicating that the process can be utilized for fabrication of structures involving moderate to low restraint intensities (200 to 1000 kg/mm2). Lamellar tear tests conducted using full thickness plates at heat input levels ranging from 10 to 27 kJ/cm showed no incidence of lamellar tear upon visual, ultrasonic, and four-section macroexamination. These tests were repeated using machined plates, such that the midthickness of the plates (segregated zone) corresponded to the heat affected zone of the weld. No cracks were observed, indicating good lamellar tear resistance of the weld joint. Optimized welding conditions were formulated based on these tests. The weld joint was subjected to extensive tests to assess the physical properties and soundness of the weld joint. The weld joint exhibited good strength (64.7 kg/mm2) and impact toughness (5.7 and 3.5 kg.m at -20 °C for weld metal and heat affected zone properties. Crack tip opening displacement (CTOD) tests carried out for parent metal, heat-affected zone, and weld metal resulted in δm values of 0.41, 0.40, and 0.34 mm, respectively, which indicates adequate resistance to cleavage fracture. It was concluded that the weld joint conforms to the requirements of SAILMA-450 HI specification and ensures a high integrity of the fabricated products.

Predicting Biological Information Flow in a Model Oxygen Minimum Zone

NASA Astrophysics Data System (ADS)

Louca, S.; Hawley, A. K.; Katsev, S.; Beltran, M. T.; Bhatia, M. P.; Michiels, C.; Capelle, D.; Lavik, G.; Doebeli, M.; Crowe, S.; Hallam, S. J.

2016-02-01

Microbial activity drives marine biochemical fluxes and nutrient cycling at global scales. Geochemical measurements as well as molecular techniques such as metagenomics, metatranscriptomics and metaproteomics provide great insight into microbial activity. However, an integration of molecular and geochemical data into mechanistic biogeochemical models is still lacking. Recent work suggests that microbial metabolic pathways are, at the ecosystem level, strongly shaped by stoichiometric and energetic constraints. Hence, models rooted in fluxes of matter and energy may yield a holistic understanding of biogeochemistry. Furthermore, such pathway-centric models would allow a direct consolidation with meta'omic data. Here we present a pathway-centric biogeochemical model for the seasonal oxygen minimum zone in Saanich Inlet, a fjord off the coast of Vancouver Island. The model considers key dissimilatory nitrogen and sulfur fluxes, as well as the population dynamics of the genes that mediate them. By assuming a direct translation of biocatalyzed energy fluxes to biosynthesis rates, we make predictions about the distribution and activity of the corresponding genes. A comparison of the model to molecular measurements indicates that the model explains observed DNA, RNA, protein and cell depth profiles. This suggests that microbial activity in marine ecosystems such as oxygen minimum zones is well described by DNA abundance, which, in conjunction with geochemical constraints, determines pathway expression and process rates. Our work further demonstrates how meta'omic data can be mechanistically linked to environmental redox conditions and biogeochemical processes.

Three-Dimensional Distribution of Larval Fish Habitats in the Shallow Oxygen Minimum Zone in the Eastern Tropical Pacific Ocean off Mexico

NASA Astrophysics Data System (ADS)

Davies, S.; Sanchez Velasco, L.; Beier, E.; Godinez, V. M.; Barton, E. D.; Tamayo, A.

2016-02-01

Three-dimensional distribution of larval fish habitats was analyzed, from the upper limit of the shallow oxygen minimum zone ( 0.2 mL/L) to the sea surface, in the eastern tropical Pacific Ocean off Mexico in February 2010.The upper limit rises from 250 m depth in the entrance of the Gulf of California to 80 m depth off Cabo Corrientes. Three larval fish habitats were defined statistically: (i) a Gulf of California habitat dominated by Anchoa spp. larvae (epipelagic species), constrained to the oxygenated surface layer (>3.5 mL/L) in and above the thermocline ( 60 m depth), and separated by a salinity front from the Tropical Pacific habitat; (ii) a Tropical Pacific habitat, dominated by Vinciguerria lucetia larvae (mesopelagic species), located throughout the sampled water column, but with the highest abundance in the oxygenated upper layer above the thermocline; (iii) an Oxygen Minimum habitat defined mostly below the thermocline in hypoxic (<1 mL/L; 70 m depth) and anoxic (<0.2 mL/L; 80 m depth) water off Cabo Corrientes. This subsurface hypoxic habitat had the highest species richness and larval abundance, with dominance of Bregmaceros bathymaster, an endemic neritic pelagic species; which was an unexpected result. This maybe associated with the shoaling of the upper limit of the shallow oxygen minimum zone near the coast, a result of the strong costal upwelling detected by the Bakun Index. In this region of strong and semi-continuous coastal upwelling in the eastern tropical Pacific off Mexico, the shallow hypoxic water does not have dramatic effects on the total larval fish abundance but appears to affect species composition.

33 CFR 165.749 - Security Zone: Escorted Vessels, Savannah, Georgia, Captain of the Port Zone.

Code of Federal Regulations, 2011 CFR

2011-07-01

... clearly identifiable by lights, vessel markings, or with agency insignia as listed below: (1) Coast Guard... vessels are moored, dayboards or other visual indications such as lights or buoys may be used. In all... minimum safe speed if it is: (1) On a plane; (2) In the process of coming up onto or coming off a plane...

33 CFR 165.749 - Security Zone: Escorted Vessels, Savannah, Georgia, Captain of the Port Zone.

Code of Federal Regulations, 2010 CFR

2010-07-01

... clearly identifiable by lights, vessel markings, or with agency insignia as listed below: (1) Coast Guard... vessels are moored, dayboards or other visual indications such as lights or buoys may be used. In all... minimum safe speed if it is: (1) On a plane; (2) In the process of coming up onto or coming off a plane...

The Hellenic Subduction Zone: A tomographic image and its geodynamic implications

NASA Astrophysics Data System (ADS)

Spakman, W.; Wortel, M. J. R.; Vlaar, N. J.

1988-01-01

New tomographic images of the Hellenic subduction zone demonstrate slab penetration in the Aegean Upper Mantle to depths of at least 600 km. Beneath Greece the lower part of the slab appears to be detached at a depth of about 200 km whereas it still seems to be unruptured beneath the southern Aegean. Schematically we derive minimum time estimates for the duration of the Hellenic subduction zone that range from 26 to 40 Ma. This is considerably longer than earlier estimates which vary between 5 and about 13 Ma.

Effects of tidal current phase at the junction of two straits

USGS Publications Warehouse

Warner, J.; Schoellhamer, D.; Burau, J.; Schladow, G.

2002-01-01

Estuaries typically have a monotonic increase in salinity from freshwater at the head of the estuary to ocean water at the mouth, creating a consistent direction for the longitudinal baroclinic pressure gradient. However, Mare Island Strait in San Francisco Bay has a local salinity minimum created by the phasing of the currents at the junction of Mare Island and Carquinez Straits. The salinity minimum creates converging baroclinic pressure gradients in Mare Island Strait. Equipment was deployed at four stations in the straits for 6 months from September 1997 to March 1998 to measure tidal variability of velocity, conductivity, temperature, depth, and suspended sediment concentration. Analysis of the measured time series shows that on a tidal time scale in Mare Island Strait, the landward and seaward baroclinic pressure gradients in the local salinity minimum interact with the barotropic gradient, creating regions of enhanced shear in the water column during the flood and reduced shear during the ebb. On a tidally averaged time scale, baroclinic pressure gradients converge on the tidally averaged salinity minimum and drive a converging near-bed and diverging surface current circulation pattern, forming a "baroclinic convergence zone" in Mare Island Strait. Historically large sedimentation rates in this area are attributed to the convergence zone. 

36 CFR 27.1 - General objectives.

Code of Federal Regulations, 2010 CFR

2010-07-01

... this part are designed and promulgated to establish minimum standards which local zoning bylaws must... commercial and industrial use, other than existing commercial or industrial use not inconsistent with the...

Method for siting detectors within a facility

DOEpatents

Gleason, Nathaniel Jeremy Meyer

2007-12-11

A method, system and article of manufacture of siting one or more detectors in a facility represented with zones are provided. Signals S.sub.i,j representing an effect in zone j in response to a release of contaminant in zone i for one or more flow conditions are provided. A candidate architecture has one or more candidate zones. A limiting case signal is determined for each flow condition for multiple candidate architectures. The limiting case signal is a smallest system signal of multiple system signals associated with a release in a zone. Each system signal is a maximum one of the signals representing the effect in the candidate zones from the release in one zone for the flow condition. For each candidate architecture, a robust limiting case signal is determined based on a minimum of the limiting case signals. One candidate architecture is selected based on the robust limiting case signals.

Relative air temperature analysis external building on Gowa Campus

NASA Astrophysics Data System (ADS)

Mustamin, Tayeb; Rahim, Ramli; Baharuddin; Jamala, Nurul; Kusno, Asniawaty

2018-03-01

This study aims to data analyze the relative temperature and humidity of the air outside the building. Data retrieval taken from weather monitoring device (monitoring) Vaisala, RTU (Remote Terminal Unit), Which is part of the AWS (Automatic Weather Stations) Then Processing data processed and analyzed by using Microsoft Excel program in the form of graph / picture fluctuation Which shows the average value, standard deviation, maximum value, and minimum value. Results of data processing then grouped in the form: Daily, and monthly, based on time intervals every 30 minutes. The results showed Outside air temperatures in March, April, May and September 2016 Which entered in the thermal comfort zone according to SNI standard (Indonesian National Standard) only at 06.00-10.00. In late March to early April Thermal comfort zone also occurs at 15.30-18.00. The highest maximum air temperature occurred in September 2016 at 11.01-11.30 And the lowest minimum value in September 2016, time 6:00 to 6:30. The result of the next analysis shows the level of data conformity with thermal comfort zone based on SNI (Indonesian National Standard) every month.

Detection of Microbial Trypsin-Like Enzymes by Use of an Agar Gel

DTIC Science & Technology

1990-01-01

Proteus vuloaris N 1’ I Staphylococcus aureus P ATCC 1 2598’ Strep tcoccus faeca/is P 539"’ Streptococ.:v mutans P NCTC 10 4 4 9 ’~ 67159 OMZ 176 - C-21...1- Streptococcus sanguis P, ATCC :0557 ATCC 105585 - 410 - Challis- Treponerna denricola N ATCC 3352W~ D39DP I’ IN39’ Ichelson 2~ 4 TRIRD 4 4 TD 2

Freedom Space for Rivers: A Sustainable Management Approach to Enhance River Resilience

NASA Astrophysics Data System (ADS)

Biron, Pascale M.; Buffin-Bélanger, Thomas; Larocque, Marie; Choné, Guénolé; Cloutier, Claude-André; Ouellet, Marie-Audray; Demers, Sylvio; Olsen, Taylor; Desjarlais, Claude; Eyquem, Joanna

2014-11-01

River systems are increasingly under stress and pressure from agriculture and urbanization in riparian zones, resulting in frequent engineering interventions such as bank stabilization or flood protection. This study provides guidelines for a more sustainable approach to river management based on hydrogeomorphology concepts applied to three contrasted rivers in Quebec (Canada). Mobility and flooding spaces are determined for the three rivers, and three levels of "freedom space" are subsequently defined based on the combination of the two spaces. The first level of freedom space includes very frequently flooded and highly mobile zones over the next 50 years, as well as riparian wetlands. It provides the minimum space for both fluvial and ecological functionality of the river system. On average for the three studied sites, this minimum space was approximately 1.7 times the channel width, but this minimum space corresponds to a highly variable width which must be determined from a thorough hydrogeomorphic assessment and cannot be predicted using a representative average. The second level includes space for floods of larger magnitude and provides for meanders to migrate freely over a longer time period. The last level of freedom space represents exceptional flood zones. We propose the freedom space concept to be implemented in current river management legislation because it promotes a sustainable way to manage river systems, and it increases their resilience to climate and land use changes in comparison with traditional river management approaches which are based on frequent and spatially restricted interventions.

Crustal structure and kinematics of the TAMMAR propagating rift system on the Mid-Atlantic Ridge from seismic refraction and satellite altimetry gravity

NASA Astrophysics Data System (ADS)

Kahle, Richard L.; Tilmann, Frederik; Grevemeyer, Ingo

2016-08-01

The TAMMAR segment of the Mid-Atlantic Ridge forms a classic propagating system centred about two degrees south of the Kane Fracture Zone. The segment is propagating to the south at a rate of 14 mm yr-1, 15 per cent faster than the half-spreading rate. Here, we use seismic refraction data across the propagating rift, sheared zone and failed rift to investigate the crustal structure of the system. Inversion of the seismic data agrees remarkably well with crustal thicknesses determined from gravity modelling. We show that the crust is thickened beneath the highly magmatic propagating rift, reaching a maximum thickness of almost 8 km along the seismic line and an inferred (from gravity) thickness of about 9 km at its centre. In contrast, the crust in the sheared zone is mostly 4.5-6.5 km thick, averaging over 1 km thinner than normal oceanic crust, and reaching a minimum thickness of only 3.5 km in its NW corner. Along the seismic line, it reaches a minimum thickness of under 5 km. The PmP reflection beneath the sheared zone and failed rift is very weak or absent, suggesting serpentinisation beneath the Moho, and thus effective transport of water through the sheared zone crust. We ascribe this increased porosity in the sheared zone to extensive fracturing and faulting during deformation. We show that a bookshelf-faulting kinematic model predicts significantly more crustal thinning than is observed, suggesting that an additional mechanism of deformation is required. We therefore propose that deformation is partitioned between bookshelf faulting and simple shear, with no more than 60 per cent taken up by bookshelf faulting.

The ambient acoustic environment in Laguna San Ignacio, Baja California Sur, Mexico.

PubMed

Seger, Kerri D; Thode, Aaron M; Swartz, Steven L; Urbán, Jorge R

2015-11-01

Each winter gray whales (Eschrichtius robustus) breed and calve in Laguna San Ignacio, Mexico, where a robust, yet regulated, whale-watching industry exists. Baseline acoustic environments in LSI's three zones were monitored between 2008 and 2013, in anticipation of a new road being paved that will potentially increase tourist activity to this relatively isolated location. These zones differ in levels of both gray whale usage and tourist activity. Ambient sound level distributions were computed in terms of percentiles of power spectral densities. While these distributions are consistent across years within each zone, inter-zone differences are substantial. The acoustic environment in the upper zone is dominated by snapping shrimp that display a crepuscular cycle. Snapping shrimp also affect the middle zone, but tourist boat transits contribute to noise distributions during daylight hours. The lower zone has three source contributors to its acoustic environment: snapping shrimp, boats, and croaker fish. As suggested from earlier studies, a 300 Hz noise minimum exists in both the middle and lower zones of the lagoon, but not in the upper zone.

Modified floating-zone growth of organic single crystals

NASA Astrophysics Data System (ADS)

Kou, S.; Chen, C. P.

1994-04-01

For organic materials floating-zone crystal growth is superior to other melt growth processes in two significant respects: (1) the absence of crucible-induced mechanical damage and (2) minimum heating-induced chemical degradation. Due to the rather low surface tension of organic melts, however, floating-zone crystal growth under normal gravity has not been possible so far but microgravity is ideal for such a purpose. With the help of a modified floating-zone technique, organic single crystals of small cross-sections were test grown first under normal gravity. These small crystals were round and rectangular single crystals of benzil and salol, up to about 7 cm long and 6 mm in diameter or 9 mm × 3 mm in cross-section.

Theoretical and experimental separation dynamics in capillary zone electrophoresis

NASA Technical Reports Server (NTRS)

Thormann, Wolfgang; Michaud, Jon-Pierre; Mosher, Richard A.

1986-01-01

The mathematical model of Bier et al. (1983) is used in a computer aided analysis of the conditions in capillary zone electrophoresis (ZE) under which sample zones migrate noninteractively with the carrier electrolyte. The monitoring of sample zones with a capillary analyzer that features both on-line conductivity and UV detection at the end of the separation trough is discussed. Data from a ZE analysis of a 5-component mixture are presented, and it is noted that all five components can be monitored via their conductivity change if enough sample is present. It is suggested from the results that the concentration ratio of background buffer to sample should be a minimum of 100:1 to effectively apply the plate concept to ZE.

Immunoelectrophoretic study of cell surface antigens from different Streptococcus mutans serotypes and Streptococcus sanguis.

PubMed

Ogier, J A; Klein, J P; Niddam, R; Frank, R M

1985-06-01

Antigens prepared from culture supernatants or whole cells of several cariogenic strains were examined by immunoelectrophoresis for their crossed antigenicity, with reference to Streptococcus mutans OMZ175, serotype f. Crossed immunoelectrophoresis revealed a crossreactivity between soluble extracellular and wall associated antigens of six strains of Streptococcus mutans and one strain of Streptococcus sanguis. Protease destroyed the immunoreactivity of crossreactive antigens. One of them was shown to be localized on the bacterial surface.

The Collagen Binding Protein Cnm Contributes to Oral Colonization and Cariogenicity of Streptococcus mutans OMZ175

PubMed Central

Miller, James H.; Avilés-Reyes, Alejandro; Scott-Anne, Kathy; Gregoire, Stacy; Watson, Gene E.; Sampson, Edith; Progulske-Fox, Ann; Koo, Hyun; Bowen, William H.; Lemos, José A.

2015-01-01

Streptococcus mutans is the etiological agent of dental caries and one of the many bacterial species implicated in infective endocarditis. The expression of the collagen-binding protein Cnm by S. mutans has been associated with extraoral infections, but its relevance for dental caries has only been theorized to date. Due to the collagenous composition of dentinal and root tissues, we hypothesized that Cnm may facilitate the colonization of these surfaces, thereby enhancing the pathogenic potential of S. mutans in advancing carious lesions. As shown for extraoral endothelial cell lines, Cnm mediates the invasion of oral keratinocytes and fibroblasts by S. mutans. In this study, we show that in the Cnm+ native strain, OMZ175, Cnm mediates stringent adhesion to dentinal and root tissues as well as collagen-coated surfaces and promotes both cariogenicity and carriage in vivo. In vitro, ex vivo, and in vivo experiments revealed that while Cnm is not universally required for S. mutans cariogenicity, it contributes to (i) the invasion of the oral epithelium, (ii) enhanced binding on collagenous surfaces, (iii) implantation of oral biofilms, and (IV) the severity of caries due to a native Cnm+ isolate. Taken together, our findings reveal that Cnm is a colonization factor that contributes to the pathogenicity of certain S. mutans strains in their native habitat, the oral cavity. PMID:25733523

Structure and function of nematode communities across the Indian western continental margin and its oxygen minimum zone

NASA Astrophysics Data System (ADS)

Singh, R.; Ingole, B. S.

2016-01-01

We studied patterns of nematode distribution along the western Indian continental margin to determine the influence of habitat heterogeneity and low oxygen levels on the community's taxonomic and functional structure. A single transect, perpendicular to the coast at 14° N latitude was sampled from 34 to 2546 m depth for biological and environmental variables during August 2007. The oxygen minimum zone extended from 102 to 1001 m. Nematodes (described and undescribed) were identified to species and classified according to biological and functional traits. A total of 110 nematode species belonging to 24 families were found along the transect. Three depth zones were identified: the shelf (depth range: 34-102 m; highest nematode mean density: 176.6 ± 37 ind 10 cm-2), the slope (525-1524 m; 124.3 ± 16 ind 10 cm-2), and the basin (2001-2546 m; 62.9 ± 2 ind 10 cm-2). Across the entire study area, the dominant species were Terschellingia longicaudata, Desmodora sp. 1, Sphaerolaimus gracilis, and Theristus ensifer; their maximum density was at shelf stations. Nematode communities in different zones differed in species composition. Chromadorita sp. 2 (2.78 %) and Sphaerolaimus gracilis (2.21 %) were dominant on the shelf, whereas Terschellingia longicaudata (4.73 %) and Desmodora sp. 1 (4.42 %) were dominant on the slope, but in the basin, Halalaimus sp. 1(1.11 %) and Acantholaimus elegans (1.11 %) were dominant. The information in a particular functional group was not a simple reflection of the information in species abundance. Ecological information captured by adult length, adult shape, and life-history strategy was less site-specific and thus differed notably from information contained in other taxonomic groups. The functional composition of nematodes was strongly linked to the organic-carbon and dissolved-oxygen concentration. Seven species were found exclusively in the oxygen minimum zone: Pselionema sp. 1, Choanolaimus sp. 2, Halichoanolaimus sp. 1, Cobbia dentata, Daptonema sp. 1, Trissonchulus sp. 1, and Minolaimus sp. 1. Correlation with a number of environmental variables indicated that food quantity (measured as the organic-carbon content and chlorophyll content) and oxygen level were the major factors that influenced nematode community structure and function.

1D minimum p-velocity model of the Kamchatka subducting zone

NASA Astrophysics Data System (ADS)

Nizkous, I.; Sanina, I.; Gontovaya, L.

2003-04-01

Kamchatka peninsula is a very active seismic zone. The old Pacific plate subducts below the North American Plate and this causes high seismic and volcanic activity in this region. The extensive Kamchatka Regional Seismic Network (KRSN) has operated since 1962 and registers around 600 earthquakes per year. This provides a large number of high quality seismic data. In this work we are investigate P-velocity structure of the Kamchatka peninsula and subducting zone in Western Pacific. This region is well studied, but we would like to try a little bit different approach. We would like to present 1D minimum P-velocity model of the Kamchatka region created using VELEST program [3]. Data set based on 84 well-located earthquakes (IP, EP, IS and ES phases) recorded by KRSN in 1998 and in 1999. As the initial model Kuzin's model have been taken [1]. But in our calculations we split model into 17 layers instead of initial 5. Maximal investigated depth is 120 km. Using VELEST simultaneous mode we solve coupled hypocenter-velocity model problem for local earthquakes. In this case it is very important to utilize well locatable events for the sake of minimizing a priori added uncertainties. And this is major point of the approach. We apply this idea and the result is looks like the result obtained by A. Gorbatov et. al. [2] Using this 1D minimum model we redefine earthquakes hypocenter parameters and recalculate p-wave travel time residuals. This work is the first step in 3D modeling of the Kamchatka subducting zone. References: 1. I.P Kuzin. 'Focal zone and upper mantle structure of the East Kamchatka region', Moscow, Nauka, 1974. 2. A. Gorbatov, J. Domingues, G.Suarez, V.kostoglodov, D.Zhao, and E. Gordeev, 'Tomographic imaging of the P-wave velocity structure beneath the Kamchatka peninsula', Geophys. J. Int, 1999, 137, 269-279. 3. Kissling, E., W.L. Ellsworth, D. Eberhart-Phillips, and U. Kradolfer: Initial reference models in local earthquake tomography, J. Geophys. Res., 99, 19635-19646, 1994.

Factors associated with minimal meal frequency and dietary diversity practices among infants and young children in the predominantly agrarian society of Bale zone, Southeast Ethiopia: a community based cross sectional study.

PubMed

Tegegne, Mekonnen; Sileshi, Semere; Benti, Tomas; Teshome, Mulusew; Woldie, Haile

2017-01-01

Poor infant and young child feeding (IYCF) practices in the first 2 years of age are among major causes of childhood malnutrition, in developing countries including Ethiopia. It results in irreversible outcomes of stunting, poor cognitive development, and significantly increases risks of many chronic and infectious diseases. This study was intended to assess factors associated with minimum meal frequency and minimum dietary diversity practice among children aged 6-23 months in the predominantly agrarian society of Bale zone, Southeast Ethiopia. A community based cross sectional study was employed from January to June 2016. An interviewer administered, pretested and structured questionnaire was used to collect data. Multi-stage sampling followed by a systematic random sampling technique was used to include study subjects. Data was entered using Epi info version 3.5.3 and analyzed by SPSS version 20. In the logistic regression, both bivariate and multivariate analyses were carried out to identify factors associated with minimum meal frequency and minimum dietary diversity scores. All variables with P -values of <0.2 in the bivariate were earmarked for the multivariate analysis. Both Crude Odds Ratio (COR) and Adjusted Odds Ratio (AOR) were computed at 95% Confidence Interval (CI) to determine the strength of associations. In the multivariate analysis, variables at P-Values of <0.05 were considered as statistically significant with minimum meal frequency and dietary diversity practice. A total of 801 infants and young children aged 6-23 months and their mothers participated in the study. The overall prevalence of minimum meal frequency and minimum dietary diversity practice was 68.4% [95% CI: 0.652, 0.716] and 28.5% [95% CI: 0.254, 0.316], respectively. Child age (AOR = 0.29; 95% CI: 0.28, 0.94) and parity of mother (AOR = 2.8; 95% CI: 1.11, 7.50) were independently associated with minimal meal frequency. On the other hand, mothers educational level (AOR = 0.52; 95% CI: 0.28, 0.94), child illness in the past 1 week (AOR = 0.44; 95% CI: 0.26, 0.73) and maternal counselling on IYCF practice during postnatal care (PNC) visits (AOR = 2.6; 95% CI: 1.59, 4.45) were factors statistically associated with dietary diversity practice in the study area. Compliance to recommended minimum meal frequency and diversified diets was low in this study community. Minimum meal frequency was associated with the age of child and parity of mother. But, mothers' education, child illness in the past 1 week, and maternal counseling on IYCF during PNC visits were factors associated with minimum dietary diversity practice. Improving the level of maternal and child health care utilization, increasing the educational level of mothers and providing health and nutrition counseling on IYCF during maternal PNC service visits are vital interventions to improve IYCF practices in the predominantly agrarian society of Bale zone, Southeast Ethiopia.

THREE PLANETS ORBITING WOLF 1061

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wright, D. J.; Wittenmyer, R. A.; Tinney, C. G.

We use archival HARPS spectra to detect three planets orbiting the M3 dwarf Wolf 1061 (GJ 628). We detect a 1.36 M{sub ⊕} minimum-mass planet with an orbital period P = 4.888 days (Wolf 1061b), a 4.25 M{sub ⊕} minimum-mass planet with orbital period P = 17.867 days (Wolf 1061c), and a likely 5.21 M{sub ⊕} minimum-mass planet with orbital period P = 67.274 days (Wolf 1061d). All of the planets are of sufficiently low mass that they may be rocky in nature. The 17.867 day planet falls within the habitable zone for Wolf 1061 and the 67.274 day planetmore » falls just outside the outer boundary of the habitable zone. There are no signs of activity observed in the bisector spans, cross-correlation FWHMs, calcium H and K indices, NaD indices, or Hα indices near the planetary periods. We use custom methods to generate a cross-correlation template tailored to the star. The resulting velocities do not suffer the strong annual variation observed in the HARPS DRS velocities. This differential technique should deliver better exploitation of the archival HARPS data for the detection of planets at extremely low amplitudes.« less

The extraction of antimicrobials component of andaliman (Zanthoxylum acanthopodium DC.) and its application on catfish (Pangasius sutchi) fillet

NASA Astrophysics Data System (ADS)

Muzafri, A.; Julianti, E.; Rusmarilin, H.

2018-02-01

Andaliman (Zanthoxylum acanthopodium DC.) is a well known wild species in North Sumatera and used for seasoning in Batak’s traditional cuisine. This study was aimed to examine the phytochemical constituents of andaliman fruit extracts after simple macerated in water, methanol, ethyl acetate and hexana using qualitative phytochemical analysis, and to determine its potential antimicrobial activity against Staphylococus aureus, Escherichia coli and Salmonella sp by using agar well difussion method and minimum inhibitory concentration (MIC). Phytochemicals such as alkaloids, flavonoid, glycosides, saponins, tannins, triterpene/steroid and glycoside anthroquinones were detected in the methanol extracts, but steroids and glycisode antraquinones were absent in the ethyl acetate extract. The ethyl acetate extracts showed maximum zone of inhibition and minimum inhibitory concentration against all the experimental microorganisms. The minimum zone of inhibition was determined in hexane extracts showing less antimicrobial activity against all the experimental microorganisms. The MIC of the ethyl acetate extracts was 0,5% w/v for all tested bacteria. Apllication of ethyl acetate extracts of andaliman fruits showed effective for catfish (Pangasius Sutchi) fillet stored in refrigerator (5 °C) for 3 days.

Minimum inhibitory concentration breakpoints and disk diffusion inhibitory zone interpretive criteria for tilmicosin susceptibility testing against Pasteurella multocida and Actinobacillus pleuropneumoniae associated with porcine respiratory disease.

PubMed

Shryock, Thomas R; Staples, J Mitchell; DeRosa, David C

2002-09-01

Tilmicosin is a novel macrolide antibiotic developed for exclusive use in veterinary medicine. Tilmicosin has been approved as a feed premix to control porcine respiratory disease associated with Pasteurella multocida and Actinobacillus pleuropneumoniae. The development of antimicrobial susceptibility testing guidelines for tilmicosin was predicated on the relationship of clinical efficacy studies that demonstrated a favorable therapeutic outcome, on pharmacokinetic data, and on in vitro test data, as recommended by the National Committee for Clinical Laboratory Standards (NCCLS). The approved breakpoints for the minimum inhibitory concentration dilution testing for both species are resistant, > or = 32 microg/ml, and susceptible, < or = 16 microg/ml. The zone of inhibition interpretive criteria for disk diffusion testing with a 15-microg tilmicosin disk are resistant, < or = 10 mm, and susceptible, > or = 11 mm.

Application of genetic algorithm in the evaluation of the profile error of archimedes helicoid surface

NASA Astrophysics Data System (ADS)

Zhu, Lianqing; Chen, Yunfang; Chen, Qingshan; Meng, Hao

2011-05-01

According to minimum zone condition, a method for evaluating the profile error of Archimedes helicoid surface based on Genetic Algorithm (GA) is proposed. The mathematic model of the surface is provided and the unknown parameters in the equation of surface are acquired through least square method. Principle of GA is explained. Then, the profile error of Archimedes Helicoid surface is obtained through GA optimization method. To validate the proposed method, the profile error of an Archimedes helicoid surface, Archimedes Cylindrical worm (ZA worm) surface, is evaluated. The results show that the proposed method is capable of correctly evaluating the profile error of Archimedes helicoid surface and satisfy the evaluation standard of the Minimum Zone Method. It can be applied to deal with the measured data of profile error of complex surface obtained by three coordinate measurement machines (CMM).

Interacting vegetative and thermal contributions to water movement in desert soil

USGS Publications Warehouse

Garcia, C.A.; Andraski, Brian J.; Stonestrom, David A.; Cooper, C.A.; Šimůnek, J.; Wheatcraft, S.W.

2011-01-01

Thermally driven water-vapor flow can be an important component of total water movement in bare soil and in deep unsaturated zones, but this process is often neglected when considering the effects of soil–plant–atmosphere interactions on shallow water movement. The objectives of this study were to evaluate the coupled and separate effects of vegetative and thermal-gradient contributions to soil water movement in desert environments. The evaluation was done by comparing a series of simulations with and without vegetation and thermal forcing during a 4.7-yr period (May 2001–December 2005). For vegetated soil, evapotranspiration alone reduced root-zone (upper 1 m) moisture to a minimum value (25 mm) each year under both isothermal and nonisothermal conditions. Variations in the leaf area index altered the minimum storage values by up to 10 mm. For unvegetated isothermal and nonisothermal simulations, root-zone water storage nearly doubled during the simulation period and created a persistent driving force for downward liquid fluxes below the root zone (total net flux ~1 mm). Total soil water movement during the study period was dominated by thermally driven vapor fluxes. Thermally driven vapor flow and condensation supplemented moisture supplies to plant roots during the driest times of each year. The results show how nonisothermal flow is coupled with plant water uptake, potentially influencing ecohydrologic relations in desert environments.

Combustion Limits and Efficiency of Turbojet Engines

NASA Technical Reports Server (NTRS)

Barnett, H. C.; Jonash, E. R.

1956-01-01

Combustion must be maintained in the turbojet-engine combustor over a wide range of operating conditions resulting from variations in required engine thrust, flight altitude, and flight speed. Furthermore, combustion must be efficient in order to provide the maximum aircraft range. Thus, two major performance criteria of the turbojet-engine combustor are (1) operatable range, or combustion limits, and (2) combustion efficiency. Several fundamental requirements for efficient, high-speed combustion are evident from the discussions presented in chapters III to V. The fuel-air ratio and pressure in the burning zone must lie within specific limits of flammability (fig. 111-16(b)) in order to have the mixture ignite and burn satisfactorily. Increases in mixture temperature will favor the flammability characteristics (ch. III). A second requirement in maintaining a stable flame -is that low local flow velocities exist in the combustion zone (ch. VI). Finally, even with these requirements satisfied, a flame needs a certain minimum space in which to release a desired amount of heat, the necessary space increasing with a decrease in pressure (ref. 1). It is apparent, then, that combustor design and operation must provide for (1) proper control of vapor fuel-air ratios in the combustion zone at or near stoichiometric, (2) mixture pressures above the minimum flammability pressures, (3) low flow velocities in the combustion zone, and (4) adequate space for the flame.

A multi-proxy analysis of Late Quaternary ocean and climate variability for the Maldives, Inner Sea

NASA Astrophysics Data System (ADS)

Bunzel, Dorothea; Schmiedl, Gerhard; Lindhorst, Sebastian; Mackensen, Andreas; Reolid, Jesús; Romahn, Sarah; Betzler, Christian

2017-12-01

As a natural sediment trap, the marine sediments of the sheltered central part of the Maldives Inner Sea represent an exceptional archive for paleoenvironmental and climate changes in the equatorial Indian Ocean. To evaluate the complex interplay between high-latitude and monsoonal climate variability, related dust fluxes, and regional oceanographic responses, we focused on Fe / Al, Ti / Al and Si / Ca ratios as proxies for terrigenous sediment delivery and total organic carbon (TOC) and Br XRF counts as proxies for marine productivity. Benthic foraminiferal fauna distributions, grain size and stable δ18O and δ13C data were used for evaluating changes in the benthic ecosystem and changes in the intermediate water circulation, bottom water current velocity and oxygenation. Our multi-proxy data record reveals an enhanced dust supply during the glacial intervals, causing elevated Fe / Al and Si / Ca ratios, an overall coarsening of the sediment and an increasing amount of agglutinated benthic foraminifera. The enhanced dust fluxes can be attributed to higher dust availability in the Asian desert and loess areas and its transport by intensified winter monsoon winds during glacial conditions. These combined effects of wind-induced mixing of surface waters and dust fertilization during the cold phases resulted in an increased surface water productivity and related organic carbon fluxes. Thus, the development of highly diverse benthic foraminiferal faunas with certain detritus and suspension feeders was fostered. The difference in the δ13C signal between epifaunal and deep infaunal benthic foraminifera reveals intermediate water oxygen concentrations between approximately 40 and 100 µmol kg-1 during this time. The precessional fluctuation pattern of oxygen changes resembles that from the deep Arabian Sea, suggesting an expansion of the oxygen minimum zone (OMZ) from the Arabian Sea into the tropical Indian Ocean with a probable regional signal of strengthened winter-monsoon-induced organic matter fluxes and oxygen consumption further controlled by the varying inflow intensity of the Antarctic Intermediate Water (AAIW). In addition, the bottom water oxygenation pattern of the Maldives Inner Sea reveals a long phase of reduced ventilation during the last glacial period. This process is likely linked to the combined effects of generally enhanced oxygen consumption rates during high-productivity phases, reduced AAIW production and the restriction of upper bathyal environments in the Inner Sea during sea-level lowstands. Thus, our multi-proxy record reflects a close linkage between the Indian monsoon oscillation, intermediate water circulation, productivity and sea-level changes on orbital timescale.

A Theoretical Basis for the Transition to Denitrification at Nanomolar Oxygen Concentrations

NASA Astrophysics Data System (ADS)

Zakem, E.; Follows, M. J.

2016-02-01

Current climate change is likely to expand the size and intensity of marine oxygen minimum zones. How will this affect denitrification rates? Current global biogeochemical models typically prescribe a critical oxygen concentration below which anaerobic activity occurs, rather than resolve the underlying microbial processes. Here, we explore the dynamics of an idealized, simulated anoxic zone in which multiple prokaryotic metabolisms are resolved mechanistically, defined by redox chemistry and biophysical constraints. We first ask, what controls the critical oxygen concentration governing the favorability of aerobic or anaerobic respiration? The predicted threshold oxygen concentration varies as a function of the environment as well as of cell physiology, and lies within the nanomolar range. The model thus provides a theoretical underpinning for the recent observations of nanomolar oxygen concentrations in oxygen minimum zones. In the context of an idealized, two-dimensional intensified upwelling simulation, we also predict denitrification at oxygen concentrations orders of magnitude higher due to physical mixing, reconciling observations of denitrification over a similar range and demonstrating a decoupling of denitrification from the local oxygen concentration. In a sensitivity study with the idealized ocean model, we comment upon the relationship between the volume of anoxic waters and total denitrification.

Geochemical evidence for enhanced preservation of organic matter in the oxygen minimum zone of the continental margin of northern California during the Late Pleistocene

USGS Publications Warehouse

Dean, Walter E.; Gardner, James V.; Anderson, Roger Y.

1994-01-01

The present upper water mass of the northeastern Pacific Ocean off California has a well-developed oxygen minimum zone between 600 and 1200 m wherein concentrations of dissolved oxygen are less than 0.5 mL/L. Even at such low concentrations of dissolved oxygen, benthic burrowing organisms are abundant enough to thoroughly bioturbate the surface and near-surface sediments. These macro organisms, together with micro organisms, also consume large quantities of organic carbon produced by large seasonal stocks of plankton in the overlying surface waters, which are supported by high concentrations of nutrients within the California Current upwelling system. In contrast to modern conditions of bioturbation, laminated sediments are preserved in upper Pleistocene sections of cores collected on the continental slope at water depths within the present oxygen minimum zone from at least as far north as the California-Oregon border and as far south as Point Conception. Comparison of sediment components in the laminae with those delivered to sediment traps as pelagic marine “snow” demonstrates that the dark-light lamination couplets are indeed annual (varves). These upper Pleistocene varved sediments contain more abundant lipid-rich “sapropelic” (type II) organic matter than the overlying bioturbated, oxidized Holocene sediments. The baseline of stable carbon isotopic composition of the organic matter in these slope cores does not change with time, indicating that the higher concentrations of type II organic matter in the varved sediments represent better preservation of organic matter rather than any change in the source of organic matter.

Structural and functional study of the nematode community from the Indian western continental margin with reference to habitat heterogeneity and oxygen minimum zone

NASA Astrophysics Data System (ADS)

Singh, R.; Ingole, B. S.

2015-07-01

We studied patterns of nematode distribution along the western Indian continental margin to determine the influence of habitat heterogeneity and oxygen minimum on the community's taxonomic and functional structure. A single transect, perpendicular to the coast at 14° N latitude was sampled from 34 to 2546 m depth for biological and environmental variables during August 2007. Nematodes were identified to species and classified according to biological/functional traits. A total of 110 nematode species belonging to 24 families were found along the transect. Mean nematode density was higher on the shelf (176 ind 10 cm-2, 34 m depth) than on the slope (124 ind 10 cm-2) or in the basin 62.9 ind 10 cm-2). Across the entire study area, the dominant species were Terschellingia longicaudata, (15.2 %), Desmodora sp 1, Sphaerolaimus gracilis, and Theristus ensifer; their maximum density was at shelf stations. Multidimensional scaling ordination (nMDS) of the nematode species abundance data indicated the effect of different zones (ANOSIM; Global R = 0.607; P = 0.028), but it was not the same in case of functional traits. Only seven species were found exclusively in the oxygen minimum zone: Pselionema sp 1, Choanolaimus sp 2, Halichoanolaimus sp 1, Cobbia dentata, Daptonema sp 1, Trissonchulus sp 1, and Minolaimus sp 1. Moreover, in our study, species diversity was higher on the shelf than on the slope or in the basin. The distinctive features of all three zones as based on nematofaunal abundance were also reflected in the functional traits (feeding types, body shape, tail shape, and life history strategy). Correlation with a number of environmental variables indicated that food quality (measured as the organic carbon content and chlorophyll content) and oxygen level were the major factors that influenced the nematode community (structural and functional).

23 CFR 630.1102 - Purpose.

Code of Federal Regulations, 2010 CFR

2010-04-01

... zone fatalities and injuries to workers and road users by establishing minimum requirements and..., installation and maintenance of temporary traffic control devices, and use of uniformed law enforcement officers during construction, utility, and maintenance operations, and by requiring contract pay items to...

30 CFR 250.428 - What must I do in certain cementing and casing situations?

Code of Federal Regulations, 2010 CFR

2010-07-01

... point. (h) Need to use less than required cement for the surface casing during floating drilling... permafrost zone uncemented Fill the annulus with a liquid that has a freezing point below the minimum...

Controlled environment crop production - Hydroponic vs. lunar regolith

NASA Technical Reports Server (NTRS)

Bugbee, Bruce G.; Salisbury, Frank B.

1989-01-01

The potential of controlled environment crop production in a lunar colony is discussed. Findings on the effects of optimal root-zone and aerial environments derived as part of the NASA CELSS project at Utah State are presented. The concept of growing wheat in optimal environment is discussed. It is suggested that genetic engineering might produce the ideal wheat cultivar for CELSS (about 100 mm in height with fewer leaves). The Utah State University hydroponic system is outlined and diagrams of the system and plant container construction are provided. Ratio of plant mass to solution mass, minimum root-zone volume, maintenance, and pH control are discussed. A comparison of liquid hydrophonic systems and lunar regoliths as substrates for plant growth is provided. The physiological processes that are affected by the root-zone environment are discussed including carbon partitioning, nutrient availability, nutrient absorption zones, root-zone oxygen, plant water potential, root-produced hormones, and rhizosphere pH control.

Structure and constitution of glass and steel compound in glass-metal composite

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lyubimova, Olga N.; Morkovin, Andrey V.; Dryuk, Sergey A.

2014-11-14

The research using methods of optical and scanning electronic microscopy was conducted and it discovered common factors on structures and diffusing zone forming after welding glass C49-1 and steel Ct3sp in technological process of creating new glass-metal composite. Different technological modes of steel surface preliminary oxidation welded with and without glass were investigated. The time of welding was varied from minimum encountering time to the time of stabilizing width of diffusion zone.

40 CFR 60.153 - Monitoring of operations.

Code of Federal Regulations, 2010 CFR

2010-07-01

...) The owner or operator of any multiple hearth, fluidized bed, or electric sludge incinerator subject to...) Install, calibrate, maintain and operate temperature measuring devices at every hearth in multiple hearth... zones of electric incinerators. For multiple hearth furnaces, a minimum of one temperature measuring...

49 CFR 173.4 - Small quantities for highway and rail.

Code of Federal Regulations, 2014 CFR

2014-10-01

... Division 6.1, Packing Group I, Hazard Zone A or B material; and (iv) [Reserved] (v) Thirty (30) mL water... of plastic having a minimum thickness of no less than 0.2 mm (0.008 inch), or earthenware, glass, or...

Regression analysis and categorical agreement of fluconazole disk zone diameters and minimum inhibitory concentration by broth microdilution of clinical isolates of Candida.

PubMed

Aggarwal, P; Kashyap, B

2017-06-01

Rampant use of fluconazole in Candida infections has led to predominance of less susceptible non-albicans Candida over Candida albicans. The aim of the study was to determine if zone diameters around fluconazole disk can be used to estimate the minimum inhibitory concentration (MIC) for clinical isolates of Candida species and vice versa. Categorical agreement between the Clinical & Laboratory Standards Institute (CLSI) recommended disk diffusion and CLSI broth microdilution method was sought for. Antifungal susceptibility testing by disk diffusion and Broth microdilution was done as per CLSI document M44-S3 and CLSI document M27-S4 for Candida isolates respectively. Regression analysis correlating zone diameters to MIC value was done. Pearson's correlation coefficient was calculated to determine correlation between disk zone diameters and MICs. Candida albicans (33.3%) was clearly outnumbered by other non-albicans species predominantly Candida tropicalis (42.5%) and Candida glabrata (18.4%). Ten percent of the strains were resistant to fluconazole by disk diffusion and 13% by broth microdilution. MIC range for Candida albicans and Candida tropicalis ranged from≤0.25-64μg/ml while that of Candida glabrata ranged from≤0.25-128μg/ml. Categorical agreement between disk diffusion and broth microdilution was 86.8%. Pearson's coefficient of correlation was -0.5975 indicating moderate negative correlation between the two variables. Zone sizes can be used to estimate the MIC values, although with limited accuracy. There should be a constant effort to upgrade the guidelines in view of new clinical data, and laboratories should make an active effort to incorporate them. Copyright © 2017 Elsevier Masson SAS. All rights reserved.

Airborne LiDAR analysis and geochronology of faulted glacial moraines in the Tahoe-Sierra frontal fault zone reveal substantial seismic hazards in the Lake Tahoe region, California-Nevada USA

USGS Publications Warehouse

Howle, James F.; Bawden, Gerald W.; Schweickert, Richard A.; Finkel, Robert C.; Hunter, Lewis E.; Rose, Ronn S.; von Twistern, Brent

2012-01-01

We integrated high-resolution bare-earth airborne light detection and ranging (LiDAR) imagery with field observations and modern geochronology to characterize the Tahoe-Sierra frontal fault zone, which forms the neotectonic boundary between the Sierra Nevada and the Basin and Range Province west of Lake Tahoe. The LiDAR imagery clearly delineates active normal faults that have displaced late Pleistocene glacial moraines and Holocene alluvium along 30 km of linear, right-stepping range front of the Tahoe-Sierra frontal fault zone. Herein, we illustrate and describe the tectonic geomorphology of faulted lateral moraines. We have developed new, three-dimensional modeling techniques that utilize the high-resolution LiDAR data to determine tectonic displacements of moraine crests and alluvium. The statistically robust displacement models combined with new ages of the displaced Tioga (20.8 ± 1.4 ka) and Tahoe (69.2 ± 4.8 ka; 73.2 ± 8.7 ka) moraines are used to estimate the minimum vertical separation rate at 17 sites along the Tahoe-Sierra frontal fault zone. Near the northern end of the study area, the minimum vertical separation rate is 1.5 ± 0.4 mm/yr, which represents a two- to threefold increase in estimates of seismic moment for the Lake Tahoe basin. From this study, we conclude that potential earthquake moment magnitudes (Mw) range from 6.3 ± 0.25 to 6.9 ± 0.25. A close spatial association of landslides and active faults suggests that landslides have been seismically triggered. Our study underscores that the Tahoe-Sierra frontal fault zone poses substantial seismic and landslide hazards.

Ground water stratification and delivery of nitrate to an incised stream under varying flow conditions.

PubMed

Böhlke, J K; O'Connell, Michael E; Prestegaard, Karen L

2007-01-01

Ground water processes affecting seasonal variations of surface water nitrate concentrations were investigated in an incised first-order stream in an agricultural watershed with a riparian forest in the coastal plain of Maryland. Aquifer characteristics including sediment stratigraphy, geochemistry, and hydraulic properties were examined in combination with chemical and isotopic analyses of ground water, macropore discharge, and stream water. The ground water flow system exhibits vertical stratification of hydraulic properties and redox conditions, with sub-horizontal boundaries that extend beneath the field and adjacent riparian forest. Below the minimum water table position, ground water age gradients indicate low recharge rates (2-5 cm yr(-1)) and long residence times (years to decades), whereas the transient ground water wedge between the maximum and minimum water table positions has a relatively short residence time (months to years), partly because of an upward increase in hydraulic conductivity. Oxygen reduction and denitrification in recharging ground waters are coupled with pyrite oxidation near the minimum water table elevation in a mottled weathering zone in Tertiary marine glauconitic sediments. The incised stream had high nitrate concentrations during high flow conditions when much of the ground water was transmitted rapidly across the riparian zone in a shallow oxic aquifer wedge with abundant outflow macropores, and low nitrate concentrations during low flow conditions when the oxic wedge was smaller and stream discharge was dominated by upwelling from the deeper denitrified parts of the aquifer. Results from this and similar studies illustrate the importance of near-stream geomorphology and subsurface geology as controls of riparian zone function and delivery of nitrate to streams in agricultural watersheds.

Ground water stratification and delivery of nitrate to an incised stream under varying flow conditions

USGS Publications Warehouse

Böhlke, J.K.; O'Connell, M. E.; Prestegaard, K.L.

2007-01-01

Ground water processes affecting seasonal variations of surface water nitrate concentrations were investigated in an incised first-order stream in an agricultural watershed with a riparian forest in the coastal plain of Maryland. Aquifer characteristics including sediment stratigraphy, geochemistry, and hydraulic properties were examined in combination with chemical and isotopic analyses of ground water, macropore discharge, and stream water. The ground water flow system exhibits vertical stratification of hydraulic properties and redox conditions, with sub-horizontal boundaries that extend beneath the field and adjacent riparian forest. Below the minimum water table position, ground water age gradients indicate low recharge rates (2-5 cm yr-1) and long residence times (years to decades), whereas the transient ground water wedge between the maximum and minimum water table positions has a relatively short residence time (months to years), partly because of an upward increase in hydraulic conductivity. Oxygen reduction and denitrification in recharging ground waters are coupled with pyrite oxidation near the minimum water table elevation in a mottled weathering zone in Tertiary marine glauconitic sediments. The incised stream had high nitrate concentrations during high flow conditions when much of the ground water was transmitted rapidly across the riparian zone in a shallow oxic aquifer wedge with abundant outflow macropores, and low nitrate concentrations during low flow conditions when the oxic wedge was smaller and stream discharge was dominated by upwelling from the deeper denitrified parts of the aquifer. Results from this and similar studies illustrate the importance of near-stream geomorphology and subsurface geology as controls of riparian zone function and delivery of nitrate to streams in agricultural watersheds. ?? ASA, CSSA, SSSA.

The most oligotrophic subtropical zones of the global ocean: similarities and differences in terms of chlorophyll and yellow substance

NASA Astrophysics Data System (ADS)

Morel, A.; Claustre, H.; Gentili, B.

2010-10-01

The cores of the subtropical anticyclonic gyres are characterized by their oligotrophic status and minimal chlorophyll concentration, compared to that of the whole ocean. These zones are unambiguously detected by space borne ocean color sensors thanks to their typical spectral reflectance, which is that of extremely clear and deep blue waters. Not only the low chlorophyll (denoted [Chl]) level, but also a reduced amount of colored dissolved organic matter (CDOM or "yellow substance") account for this clarity. The oligotrophic waters of the North and South Pacific gyres, the North and South Atlantic gyres, and the South Indian gyre have been comparatively studied with respect to both [Chl] and CDOM contents, by using 10-year data (1998-2007) of the Sea-viewing Wide field-of-view Sensor (SeaWiFS, NASA). Albeit similar these oligotrophic zones are not identical regarding their [Chl] and CDOM contents, as well as their seasonal cycles. According to the zone, the averaged [Chl] value varies from 0.026 to 0.059 mg m-3, whereas the ay(443) average (the absorption coefficient due to CDOM at 443 nm) is between 0.0033 and 0.0072 m-1. The CDOM-to-[Chl] relative proportions also differ between the zones. The clearest waters, corresponding to the lowest [Chl] and CDOM concentrations, are found near Easter Island and near Mariana Islands in the western part of the North Pacific Ocean. In spite of its low [Chl], the Sargasso Sea presents the highest CDOM content amongst the six zones studied. Except in the North Pacific gyre (near Mariana and south of Hawaii islands), a conspicuous seasonality appears to be the rule in the other 4 gyres and affects both [Chl] and CDOM; both quantities vary in a ratio of about 2 (maximum-to-minimum). Coinciding [Chl] and CDOM peaks occur just after the local winter solstice, which is also the period of the maximal mixed layer depth in these latitudes. It is hypothesized that the vertical transport of unbleached CDOM from the subthermocline layers is the main process enhancing the CDOM concentration within the upper layer in winter. In summer, the CDOM experiences its minimum which is delayed with respect to the [Chl] minimum; apparently, the solar photo-bleaching of CDOM is a slower process than the post-bloom algal Chl decay. Where they exist, the seasonal cycles are repeated without notable change from year to year. Long term (10 y) trends have not been detected in these zones. These oligotrophic gyres can conveniently be used for in-flight calibration and comparison of ocean color sensors, provided that their marked seasonal variations are accounted for.

The most oligotrophic subtropical zones of the global ocean: similarities and differences in terms of chlorophyll and yellow substance

NASA Astrophysics Data System (ADS)

Morel, A.; Claustre, H.; Gentili, B.

2010-07-01

The cores of the subtropical anticyclonic gyres are characterized by their oligotrophic status and minimal chlorophyll concentration, compared to that of the whole ocean. These zones are unambiguously detected by space borne ocean color sensors thanks to their typical spectral reflectance, which is that of extremely clear and deep blue waters. Not only the low chlorophyll (denoted [Chl]) level, but also a reduced amount of colored dissolved organic matter (CDOM or "yellow substance") account for this clarity. The oligotrophic waters of the North and South Pacific gyres, the North and South Atlantic gyres, and the South Indian gyre have been comparatively studied with respect to both [Chl] and CDOM contents, by using 10-year data (1998-2007) of the Sea-viewing Wide field-of-view Sensor (SeaWiFS, NASA). Albeit similar these oligotrophic zones are not identical regarding their [Chl] and CDOM contents, as well as their seasonal cycles. According to the zone, the averaged [Chl] value varies from 0.026 to 0.059 mg m-3, whereas the ay(443) average (the absorption coefficient due to CDOM at 443 nm) is comprised between 0.0033 and 0.0072 m-1. The CDOM-to-[Chl] relative proportions also differ between the zones. The clearest waters, corresponding to the lowest [Chl] and CDOM concentrations, are found near Easter Island and near Mariana Islands in the western part of the North Pacific Ocean. In spite of its low [Chl], the Sargasso Sea presents the highest CDOM content amongst the six zones studied. Except in the North Pacific gyre (near Mariana and south of Hawaii islands), a conspicuous seasonality appears to be the rule in the other 4 gyres and affects both [Chl] and CDOM; both quantities vary in a ratio of about 2 (maximum-to-minimum). Coinciding [Chl] and CDOM peaks occur just after the local winter solstice, which is also the period of the maximal mixed layer depth in these latitudes. It is hypothesized that the vertical transport of unbleached CDOM from the subthermocline layers is the main process enhancing the CDOM concentration within the upper layer in winter. In summer, the CDOM experiences its minimum which is delayed with respect to the [Chl] minimum; apparently, the solar photo-bleaching of CDOM is a slower process than the post-bloom algal Chl decay. Where they exist, the seasonal cycles are repeated without notable change from year to year; long term (10 years) trends have not been detected in these zones. These oligotrophic gyres can conveniently be used for in-flight calibration and comparison of ocean color sensors, provided that their marked seasonal variations are accounted for.

Hydrogenation of carbonaceous materials

DOEpatents

Friedman, Joseph; Oberg, Carl L.; Russell, Larry H.

1980-01-01

A method for reacting pulverized coal with heated hydrogen-rich gas to form hydrocarbon liquids suitable for conversion to fuels wherein the reaction involves injection of pulverized coal entrained in a minimum amount of gas and mixing the entrained coal at ambient temperature with a separate source of heated hydrogen. In accordance with the present invention, the hydrogen is heated by reacting a small portion of the hydrogen-rich gas with oxygen in a first reaction zone to form a gas stream having a temperature in excess of about 1000.degree. C. and comprising a major amount of hydrogen and a minor amount of water vapor. The coal particles then are reacted with the hydrogen in a second reaction zone downstream of the first reaction zone. The products of reaction may be rapidly quenched as they exit the second reaction zone and are subsequently collected.

Unravelling Diurnal Asymmetry of Surface Temperature in Different Climate Zones.

PubMed

Vinnarasi, R; Dhanya, C T; Chakravorty, Aniket; AghaKouchak, Amir

2017-08-04

Understanding the evolution of Diurnal Temperature Range (DTR), which has contradicting global and regional trends, is crucial because it influences environmental and human health. Here, we analyse the regional evolution of DTR trend over different climatic zones in India using a non-stationary approach known as the Multidimensional Ensemble Empirical Mode Decomposition (MEEMD) method, to explore the generalized influence of regional climate on DTR, if any. We report a 0.36 °C increase in overall mean of DTR till 1980, however, the rate has declined since then. Further, arid deserts and warm-temperate grasslands exhibit negative DTR trends, while the west coast and sub-tropical forest in the north-east show positive trends. This transition predominantly begins with a 0.5 °C increase from the west coast and spreads with an increase of 0.25 °C per decade. These changes are more pronounced during winter and post-monsoon, especially in the arid desert and warm-temperate grasslands, the DTR decreased up to 2 °C, where the rate of increase in minimum temperature is higher than the maximum temperature. We conclude that both maximum and minimum temperature increase in response to the global climate change, however, their rates of increase are highly local and depend on the underlying climatic zone.

Geochronologic evidence for a possible MIS-11 emergent barrier/beach-ridge in southeastern Georgia, USA

USGS Publications Warehouse

Markewich, H.W.; Pavich, M.J.; Schultz, A.P.; Mahan, S.A.; Aleman-Gonzalez, W. B.; Bierman, P.R.

2013-01-01

Predominantly clastic, off-lapping, transgressive, near-shore marine sediment packages that are morphologically expressed as subparallel NE-trending barriers, beach ridges, and associated back-barrier areas, characterize the near-surface stratigraphic section between the Savannah and the Ogeechee Rivers in Effingham County, southeastern Georgia. Each barrier/back-barrier (shoreline) complex is lower than and cut into a higher/older complex. Each barrier or shoreline complex overlies Miocene strata. No direct age data are available for these deposits. Previous researchers have disagreed on their age and provenance. Using luminescence and meteoric beryllium-10 (10Be) inventory analyses, we estimated a minimum age for the largest, westernmost, morphologically identifiable, and topographically-highest, barrier/beach-ridge (the Wicomico shoreline barrier) and constrained the age of a suite of younger barrier/beach-ridges that lie adjacent and seaward of the Wicomico shoreline barrier. At the study site, the near-shore marine/estuarine deposits underlying the Wicomico shoreline barrier are overlain by eolian sand and an intervening zone-of-mixing. Optically stimulated luminescence (OSL) data indicate ages of ≤43 ka for the eolian sand and 116 ka for the zone-of-mixing. Meteoric 10Be and pedostratigraphic data indicate minimum residence times of 33.4 ka for the eolian sand, 80.6 ka for the zone-of-mixing, and 247 ka for the paleosol. The combined OSL and 10Be age data indicate that, at this locality, the barrier/beach ridge has a minimum age of about 360 ka. This age for the Wicomico shoreline-barrier deposit is the first for any Pleistocene near-shore marine/estuarine deposit in southeast Georgia that is conclusively older than 80 ka. The 360-ka minimum age is in agreement with other geochronologic data for near-coastline deposits in Georgia and South Carolina. The geomorphic position of this barrier/beach-ridge is similar to deposits in South Carolina considered to be ~450 ka to >1 Ma. The age and geomorphic data for Georgia and South Carolina possibly suggest the presence of MIS-11 (~420−360 ka) shoreline deposits between 15 m and 28 m above present sea level in the Southeastern Atlantic Coastal Plain.

Hypoxia Tolerance and Metabolic Suppression in Oxygen Minimum Zone Euphausiids: Implications for Ocean Deoxygenation and Biogeochemical Cycles.

PubMed

Seibel, Brad A; Schneider, Jillian L; Kaartvedt, Stein; Wishner, Karen F; Daly, Kendra L

2016-10-01

The effects of regional variations in oxygen and temperature levels with depth were assessed for the metabolism and hypoxia tolerance of dominant euphausiid species. The physiological strategies employed by these species facilitate prediction of changing vertical distributions with expanding oxygen minimum zones and inform estimates of the contribution of vertically migrating species to biogeochemical cycles. The migrating species from the Eastern Tropical Pacific (ETP), Euphausia eximia and Nematoscelis gracilis, tolerate a Partial Pressure (PO2) of 0.8 kPa at 10 °C (∼15 µM O2) for at least 12 h without mortality, while the California Current species, Nematoscelis difficilis, is incapable of surviving even 2.4 kPa PO2 (∼32 µM O2) for more than 3 h at that temperature. Euphausia diomedeae from the Red Sea migrates into an intermediate oxygen minimum zone, but one in which the temperature at depth remains near 22 °C. Euphausia diomedeae survived 1.6 kPa PO2 (∼22 µM O2) at 22 °C for the duration of six hour respiration experiments. Critical oxygen partial pressures were estimated for each species, and, for E. eximia, measured via oxygen consumption (2.1 kPa, 10 °C, n = 2) and lactate accumulation (1.1 kPa, 10 °C). A primary mechanism facilitating low oxygen tolerance is an ability to dramatically reduce energy expenditure during daytime forays into low oxygen waters. The ETP and Red Sea species reduced aerobic metabolism by more than 50% during exposure to hypoxia. Anaerobic glycolytic energy production, as indicated by whole-animal lactate accumulation, contributed only modestly to the energy deficit. Thus, the total metabolic rate was suppressed by ∼49-64%. Metabolic suppression during diel migrations to depth reduces the metabolic contribution of these species to vertical carbon and nitrogen flux (i.e., the biological pump) by an equivalent amount. Growing evidence suggests that metabolic suppression is a widespread strategy among migrating zooplankton in oxygen minimum zones and may have important implications for the economy and ecology of the oceans. The interacting effects of oxygen and temperature on the metabolism of oceanic species facilitate predictions of changing vertical distribution with climate change. © The Author 2016. Published by Oxford University Press on behalf of the Society for Integrative and Comparative Biology. All rights reserved. For permissions please email: journals.permissions@oup.com.

Water solubility in aluminous orthopyroxene and the origin of Earth's asthenosphere.

PubMed

Mierdel, Katrin; Keppler, Hans; Smyth, Joseph R; Langenhorst, Falko

2007-01-19

Plate tectonics is based on the concept of rigid lithosphere plates sliding on a mechanically weak asthenosphere. Many models assume that the weakness of the asthenosphere is related to the presence of small amounts of hydrous melts. However, the mechanism that may cause melting in the asthenosphere is not well understood. We show that the asthenosphere coincides with a zone where the water solubility in mantle minerals has a pronounced minimum. The minimum is due to a sharp decrease of water solubility in aluminous orthopyroxene with depth, whereas the water solubility in olivine continuously increases with pressure. Melting in the asthenosphere may therefore be related not to volatile enrichment but to a minimum in water solubility, which causes excess water to form a hydrous silicate melt.

Lithospheric strength variations as a control on new plate boundaries: examples from the northern Red Sea region

NASA Astrophysics Data System (ADS)

Steckler, Michael S.; ten Brink, Uri S.

1986-08-01

The complex plate boundary between Arabia and Africa at the northern end of the Red Sea includes the Gulf of Suez rift and the Gulf of Aqaba—Dead Sea transform. Geologic evidence indicates that during the earliest phase of rifting the Red Sea propagated NNW towards the Mediterranean Sea creating the Gulf of Suez. Subsequently, the majority of the relative movement between the plates shifted eastward to the Dead Sea transform. We propose that an increase in the strength of the lithosphere across the Mediterranean continental margin acted as a barrier to the propagation of the rift. A new plate boundary, the Dead Sea transform formed along a zone of minimum strength. We present an analysis of lithospheric strength variations across the Mediterranean continental margin. The main factors controlling these variations are the geotherm, crustal thickness and composition, and sediment thickness. The analysis predicts a characteristic strength profile at continental margins which consists of a marked increase in strength seaward of the hinge zone and a strength minimum landward of the hinge zone. This strength profile also favors the creation of thin continental slivers such as the Levant west of the Dead Sea transform and the continental promontory containing Socotra Island at the mouth of the Gulf of Aden. Calculations of strength variations based on changes of crustal thickness, geotherm and sediment thickness can be extended to other geologic settings as well. They can explain the location of rerifting events at intracratonic basins, of backarc basins and of major continental strike-slip zones.

Analyzing the Implications of Climate Data on Plant Hardiness Zones for Green Infrastructure Planning: Case Study of Knoxville, Tennessee and Surrounding Region

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sylvester, Linda M.; Omitaomu, Olufemi A.; Parish, Esther S.

Downscaled climate data for Knoxville, Tennessee and the surrounding region were used to investigate future changing Plant Hardiness Zones due to climate change. The methodology used is the same as the US Department of Agriculture (USDA), well-known for their creation of the standard Plant Hardiness Zone map used by gardeners and planners. USDA data were calculated from observed daily data for 1976–2005. The modeled climate data for the past is daily data from 1980-2005 and the future data is projected for 2025–2050. The average of all the modeled annual extreme minimums for each time period of interest was calculated. Eachmore » 1 km raster cell was placed into zone categories based on temperature, using the same criteria and categories of the USDA. The individual models vary between suggesting little change to the Plant Hardiness Zones to suggesting Knoxville moves into the next two Hardiness Zones. But overall, the models suggest moving into the next warmer Zone. USDA currently has the Knoxville area categorized as Zone 7a. None of the Zones calculated from the climate data models placed Knoxville in Zone 7a for the similar time period. The models placed Knoxville in a cooler Hardiness Zone and projected the area to increase to Zone 7. The modeled temperature data appears to be slightly cooler than the actual temperature data and this may explain the zone discrepancy. However, overall Knoxville is projected to increase to the next warmer Zone. As the modeled data has Knoxville, overall, moving from Zone 6 to Zone 7, it can be inferred that Knoxville, Tennessee may increase from their current Zone 7 to Zone 8.« less

49 CFR 179.102-4 - Vinyl fluoride, stabilized.

Code of Federal Regulations, 2010 CFR

2010-10-01

...) Include impact specimens of weld metal and heat affected zone prepared and tested in accordance with AAR.... (b) Insulation must be of approved material. (c) Excess flow valves must be installed under all... capacity stencil, MINIMUM OPERATING TEMPERATURE _ °F. (i) The tank car and insulation must be designed to...

33 CFR 334.610 - Key West Harbor, at U.S. Naval Base, Key West, Fla.; naval restricted areas and danger zone.

Code of Federal Regulations, 2010 CFR

2010-07-01

... on shore at latitude 24°35.698′ N., longitude 81°41.981′ W. (b) The Regulations: (1) Entering or... this section shall proceed at speeds commensurate with minimum wake. (c) The regulations in this...

Temperature effects on metabolic rate of juvenile Pacific bluefin tuna Thunnus orientalis.

PubMed

Blank, Jason M; Morrissette, Jeffery M; Farwell, Charles J; Price, Matthew; Schallert, Robert J; Block, Barbara A

2007-12-01

Pacific bluefin tuna inhabit a wide range of thermal environments across the Pacific ocean. To examine how metabolism varies across this thermal range, we studied the effect of ambient water temperature on metabolic rate of juvenile Pacific bluefin tuna, Thunnus thynnus, swimming in a swim tunnel. Rate of oxygen consumption (MO2) was measured at ambient temperatures of 8-25 degrees C and swimming speeds of 0.75-1.75 body lengths (BL) s(-1). Pacific bluefin swimming at 1 BL s(-1) per second exhibited a U-shaped curve of metabolic rate vs ambient temperature, with a thermal minimum zone between 15 degrees C to 20 degrees C. Minimum MO2 of 175+/-29 mg kg(-1) h(-1) was recorded at 15 degrees C, while both cold and warm temperatures resulted in increased metabolic rates of 331+/-62 mg kg(-1) h(-1) at 8 degrees C and 256+/-19 mg kg(-1) h(-1) at 25 degrees C. Tailbeat frequencies were negatively correlated with ambient temperature. Additional experiments indicated that the increase in MO2 at low temperature occurred only at low swimming speeds. Ambient water temperature data from electronic tags implanted in wild fish indicate that Pacific bluefin of similar size to the experimental fish used in the swim tunnel spend most of their time in ambient temperatures in the metabolic thermal minimum zone.

Water masses in the Humboldt Current System: Properties, distribution, and the nitrate deficit as a chemical water mass tracer for Equatorial Subsurface Water off Chile

NASA Astrophysics Data System (ADS)

Silva, Nelson; Rojas, Nora; Fedele, Aldo

2009-07-01

Three sections are used to analyze the physical and chemical characteristics of the water masses in the eastern South Pacific and their distributions. Oceanographic data were taken from the SCORPIO (May-June 1967), PIQUERO (May-June 1969), and KRILL (June 1974) cruises. Vertical sections of temperature, salinity, σ θ, dissolved oxygen, nitrate, nitrite, phosphate, and silicate were used to analyze the water column structure. Five water masses were identified in the zone through T- S diagrams: Subantarctic Water, Subtropical Water, Equatorial Subsurface Water, Antarctic Intermediate Water, and Pacific Deep Water. Their proportions in the sea water mixture are calculated using the mixing triangle method. Vertical sections were used to describe the geographical distributions of the water mass cores in the upper 1500 m. Several characteristic oceanographic features in the study area were analyzed: the shallow salinity minimum displacement towards the equator, the equatorial subsurface salinity maximum associated with a dissolved oxygen minimum zone and a high nutrient content displacement towards the south, and the equatorward intermediate Antarctic salinity minimum associated with a dissolved oxygen maximum. The nitrate deficit generated in the denitrification area off Peru and northern Chile is proposed as a conservative chemical tracer for the Equatorial Subsurface Waters off the coast of Chile, south of 25°S.

Dynamic fracture toughness of ASME SA508 Class 2a ASME SA533 grade A Class 2 base and heat affected zone material and applicable weld metals

DOE Office of Scientific and Technical Information (OSTI.GOV)

Logsdon, W.A.; Begley, J.A.; Gottshall, C.L.

1978-03-01

The ASME Boiler and Pressure Vessel Code, Section III, Article G-2000, requires that dynamic fracture toughness data be developed for materials with specified minimum yield strengths greater than 50 ksi to provide verification and utilization of the ASME specified minimum reference toughness K/sub IR/ curve. In order to qualify ASME SA508 Class 2a and ASME SA533 Grade A Class 2 pressure vessel steels (minimum yield strengths equal 65 kip/in./sup 2/ and 70 kip/in./sup 2/, respectively) per this requirement, dynamic fracture toughness tests were performed on these materials. All dynamic fracture toughness values of SA508 Class 2a base and HAZ material,more » SA533 Grade A Class 2 base and HAZ material, and applicable weld metals exceeded the ASME specified minimum reference toughness K/sub IR/ curve.« less

Modulation of galactic cosmic rays in solar cycles 22-24: Analysis and physical interpretation

NASA Astrophysics Data System (ADS)

Kalinin, M. S.; Bazilevskaya, G. A.; Krainev, M. B.; Svirzhevskaya, A. K.; Svirzhevsky, N. S.; Starodubtsev, S. A.

2017-09-01

This work represents a physical interpretation of cosmic ray modulation in the 22nd-24th solar cycles, including an interpretation of an unusual behavior of their intensity in the last minimum of the solar activity (2008-2010). In terms of the Parker modulation model, which deals with regularly measured heliospheric characteristics, it is shown that the determining factor of the increased intensity of the galactic cosmic rays in the minimum of the 24th solar cycle is an anomalous reduction of the heliospheric magnetic field strength during this time interval under the additional influence of the solar wind velocity and the tilt angle of the heliospheric current sheet. We have used in the calculations the dependence of the diffusion tensor on the rigidity in the form K ij ∝ R 2-μ with μ = 1.2 in the sector zones of the heliospheric magnetic field and with μ = 0.8 outside the sector zones, which leads to an additional amplification of the diffusion mechanism of cosmic ray modulation. The proposed approach allows us to describe quite satisfactorily the integral intensity of protons with an energy above 0.1 GeV and the energy spectra in the minima of the 22nd-24th solar cycles at the same value of the free parameter. The determining factor of the anomalously high level of the galactic cosmic ray intensity in the minimum of the 24th solar cycle is the significant reduction of the heliospheric magnetic field strength during this time interval. The forecast of the intensity level in the minimum of the 25th solar cycle is provided.

In situ stress and pore pressure in the Kumano Forearc Basin, offshore SW Honshu from downhole measurements during riser drilling

NASA Astrophysics Data System (ADS)

Saffer, D. M.; Flemings, P. B.; Boutt, D.; Doan, M.-L.; Ito, T.; McNeill, L.; Byrne, T.; Conin, M.; Lin, W.; Kano, Y.; Araki, E.; Eguchi, N.; Toczko, S.

2013-05-01

situ stress and pore pressure are key parameters governing rock deformation, yet direct measurements of these quantities are rare. During Integrated Ocean Drilling Program (IODP) Expedition #319, we drilled through a forearc basin at the Nankai subduction zone and into the underlying accretionary prism. We used the Modular Formation Dynamics Tester tool (MDT) for the first time in IODP to measure in situ minimum stress, pore pressure, and permeability at 11 depths between 729.9 and 1533.9 mbsf. Leak-off testing at 708.6 mbsf conducted as part of drilling operations provided a second measurement of minimum stress. The MDT campaign included nine single-probe (SP) tests to measure permeability and in situ pore pressure and two dual-packer (DP) tests to measure minimum principal stress. Permeabilities defined from the SP tests range from 6.53 × 10-17 to 4.23 × 10-14 m2. Pore fluid pressures are near hydrostatic throughout the section despite rapid sedimentation. This is consistent with the measured hydraulic diffusivity of the sediments and suggests that the forearc basin should not trap overpressures within the upper plate of the subduction zone. Minimum principal stresses are consistently lower than the vertical stress. We estimate the maximum horizontal stress from wellbore failures at the leak-off test and shallow MDT DP test depths. The results indicate a normal or strike-slip stress regime, consistent with the observation of abundant active normal faults in the seaward-most part of the basin, and a general decrease in fault activity in the vicinity of Site C0009.

Capacity Ratios to Assess the Solvency of a College’s Advanced Pharmacy Practice Experience Program

PubMed Central

McClellan, Nicole H.; Byrd, Debbie C.

2013-01-01

Objective. To use the capacity ratio to determine solvency in 10 advanced pharmacy practice experiences (APPEs) offered by a college of pharmacy. Methods. Availability in each APPE was determined based on preceptor responses, and student need was tabulated from 3 preference forms. Capacity ratios were calculated by dividing preceptor availability by the sum of student requests plus 20% of student requests; ratios ≥ 1 indicated solvency. For the 3 required APPEs, minimum capacity ratios were calculated by dividing availability by the sum of student number plus 20% of the student number. When possible, the capacity ratio for the APPE was calculated by geographic zone. Results. The 3 required APPEs had statewide minimum capacity ratios that were consistent with solvency: advanced community (2.8), advanced institutional (1.6), and ambulatory care (2.5). Only 3 of 7 elective APPEs demonstrated solvency. The elective APPEs for which requests exceeded availability were association management (0.8), emergency medicine (0.8), cardiology (0.6), and human immunodeficiency virus (HIV) ambulatory care clinic (0.4). Analysis by zone revealed additional insolvent practice experiences in some locations. Conclusions. The capacity ratio allowed for assessment of 10 APPEs and identification of practice experience areas that need expansion. While the capacity ratio is a proposed standardized assessment, it does have some limitations, such as an inability to account for practice experience quality, scheduling conflicts, and geographic zone issues. PMID:23519687

Automated detection of preserved photoreceptor on optical coherence tomography in choroideremia based on machine learning.

PubMed

Wang, Zhuo; Camino, Acner; Hagag, Ahmed M; Wang, Jie; Weleber, Richard G; Yang, Paul; Pennesi, Mark E; Huang, David; Li, Dengwang; Jia, Yali

2018-05-01

Optical coherence tomography (OCT) can demonstrate early deterioration of the photoreceptor integrity caused by inherited retinal degeneration diseases (IRDs). A machine learning method based on random forests was developed to automatically detect continuous areas of preserved ellipsoid zone structure (an easily recognizable part of the photoreceptors on OCT) in 16 eyes of patients with choroideremia (a type of IRD). Pseudopodial extensions protruding from the preserved ellipsoid zone areas are detected separately by a local active contour routine. The algorithm is implemented on en face images with minimum segmentation requirements, only needing delineation of the Bruch's membrane, thus evading the inaccuracies and technical challenges associated with automatic segmentation of the ellipsoid zone in eyes with severe retinal degeneration. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Energy and IAQ Implications of Alternative Minimum Ventilation Rates in California Retail and School Buildings

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dutton, Spencer M.; Fisk, William J.

For a stand-alone retail building, a primary school, and a secondary school in each of the 16 California climate zones, the EnergyPlus building energy simulation model was used to estimate how minimum mechanical ventilation rates (VRs) affect energy use and indoor air concentrations of an indoor-generated contaminant. The modeling indicates large changes in heating energy use, but only moderate changes in total building energy use, as minimum VRs in the retail building are changed. For example, predicted state-wide heating energy consumption in the retail building decreases by more than 50% and total building energy consumption decreases by approximately 10% asmore » the minimum VR decreases from the Title 24 requirement to no mechanical ventilation. The primary and secondary schools have notably higher internal heat gains than in the retail building models, resulting in significantly reduced demand for heating. The school heating energy use was correspondingly less sensitive to changes in the minimum VR. The modeling indicates that minimum VRs influence HVAC energy and total energy use in schools by only a few percent. For both the retail building and the school buildings, minimum VRs substantially affected the predicted annual-average indoor concentrations of an indoor generated contaminant, with larger effects in schools. The shape of the curves relating contaminant concentrations with VRs illustrate the importance of avoiding particularly low VRs.« less

Vitrification of waste with conitnuous filling and sequential melting

DOEpatents

Powell, James R.; Reich, Morris

2001-09-04

A method of filling a canister with vitrified waste starting with a waste, such as high-level radioactive waste, that is cooler than its melting point. Waste is added incrementally to a canister forming a column of waste capable of being separated into an upper zone and a lower zone. The minimum height of the column is defined such that the waste in the lower zone can be dried and melted while maintaining the waste in the upper zone below its melting point. The maximum height of the column is such that the upper zone remains porous enough to permit evolved gases from the lower zone to flow through the upper zone and out of the canister. Heat is applied to the waste in the lower zone to first dry then to raise and maintain its temperature to a target temperature above the melting point of the waste. Then the heat is applied to a new lower zone above the melted waste and the process of adding, drying and melting the waste continues upward in the canister until the entire canister is filled and the entire contents are melted and maintained at the target temperature for the desired period. Cooling of the melted waste takes place incrementally from the bottom of the canister to the top, or across the entire canister surface area, forming a vitrified product.

36 CFR 28.12 - Development standards.

Code of Federal Regulations, 2011 CFR

2011-07-01

... significant harm to the natural resources of the Seashore. (c) Minimum lot size is 4,000 square feet. A.../FEMA shown on Flood Insurance Rate Maps for Fire Island communities. (g) A swimming pool is an... hazards and/or detract from the natural or cultural scene. (j) A zoning authority shall have in place...

Biological nitrogen fixation in the oxygen-minimum region of the eastern tropical North Pacific ocean.

PubMed

Jayakumar, Amal; Chang, Bonnie X; Widner, Brittany; Bernhardt, Peter; Mulholland, Margaret R; Ward, Bess B

2017-10-01

Biological nitrogen fixation (BNF) was investigated above and within the oxygen-depleted waters of the oxygen-minimum zone of the Eastern Tropical North Pacific Ocean. BNF rates were estimated using an isotope tracer method that overcame the uncertainty of the conventional bubble method by directly measuring the tracer enrichment during the incubations. Highest rates of BNF (~4 nM day -1 ) occurred in coastal surface waters and lowest detectable rates (~0.2 nM day -1 ) were found in the anoxic region of offshore stations. BNF was not detectable in most samples from oxygen-depleted waters. The composition of the N 2 -fixing assemblage was investigated by sequencing of nifH genes. The diazotrophic assemblage in surface waters contained mainly Proteobacterial sequences (Cluster I nifH), while both Proteobacterial sequences and sequences with high identities to those of anaerobic microbes characterized as Clusters III and IV type nifH sequences were found in the anoxic waters. Our results indicate modest input of N through BNF in oxygen-depleted zones mainly due to the activity of proteobacterial diazotrophs.

Deglacial changes in oxygen minimum zones - the roles of physics, phytoplankton and ... fish? (Invited)

NASA Astrophysics Data System (ADS)

Galbraith, E. D.; bianchi, D.

2013-12-01

A global network of marine multi-proxy sediment records has shown that during the last deglaciation, hypoxic waters of the northern Indo-Pacific expanded, the oxygen minimum zones intensified, and denitrification within the oxygen minima accelerated. These changes would have impacted the fish and zooplankton that migrate on a daily basis down to the upper margins of hypoxic, or even suboxic waters, presumably in order to hide from predators. But the reasons behind these observed changes remain uncertain. Physical circulation changes could have altered the supply rate of oxygen to the subsurface, simultaneously modifying the resupply of nutrients to the ocean surface, while changes in dust deposition could have changed the iron nutrition of phytoplankton, further modifying export fluxes. Changes in respiration patterns could also have played an important part, either by altering the sinking depth of organic particles, or - perhaps - through changes in the respiration patterns of migrating animals, which could have acted as a strong feedback on any of the other changes. We show model simulations that explore the possible roles of these different mechanisms in natural oceanic oxygenation changes of the Quaternary.

Repeated occurrences of methanogenic zones, diagenetic dolomite formation and linked silicate alteration in southern Bering Sea sediments (Bowers Ridge, IODP Exp. 323 Site U1341)

NASA Astrophysics Data System (ADS)

Wehrmann, L. M.; Ockert, C.; Mix, A. C.; Gussone, N.; Teichert, B. M. A.; Meister, P.

2016-03-01

Diagenetic precipitates, such as dolomite, and the chemistry of residual deeply buried porewater often represent the only traces of past biogeochemical activity in marine sediments. A 600 m thick sedimentary section, recently drilled at Integrated Ocean Drilling Program (IODP) Site U1341 on Bowers Ridge (southern Bering Sea), provides insight into such a 4.3 Ma old paleo-diagenetic archive. Hard-lithified calcite-dolomite layers, and laminae of disseminated carbonate, were recovered in diatom-rich sediments over a depth range of 400 m. Carbon isotope values of the diagenetic carbonates between -16.6 and -14.4‰ (VPDB) and strontium isotope ratios of dolomites close to past seawater values suggest carbonate precipitation induced by the production of dissolved inorganic carbon (DIC) during elevated rates of organic carbon mineralization, primarily via sulfate reduction, at shallow sediment depth below the paleo-seafloor. Diagenetic carbonates at 280-440 m below seafloor were likely also produced by the intermittent onset of sulfate reduction coupled to the anaerobic oxidation of methane (AOM) at sulfate-methane transition zones (SMTZ). These microbially mediated processes do not occur in the sediment at this site at present but were likely connected to the presence of a methanogenic zone at 2.58-2.51 Ma. A minimum in sulfate concentrations in modern porewaters and low sedimentary Ba/Al ratios resulting from former sulfate depletion are reminiscent of the presence of this large methanogenic zone. The minimum in sulfate concentrations is reflected in a minimum in magnesium concentrations, less radiogenic strontium and isotopically light calcium in the porewater. It is proposed that magnesium was removed from the porewater during carbonate precipitation and volcanic ash alteration which occurred in the former methanogenic zone and also released strontium with a less radiogenic isotope ratio and isotopically light calcium into the porewater. The isotopic composition of porewater calcium was also influenced by ammonium-calcium exchange on clay minerals and carbonate recrystallization. Our study elucidates the response of porewater element concentrations and isotopic profiles interlinked with the formation of diagenetic carbonates to changes in the deposition of organic carbon in sediments of deeper water sites (>2000 m water depth) over prolonged timescales. It shows that variations in biogeochemical processes in response to changes in oceanographic conditions and a dynamic subseafloor biogeochemical zonation have to also be taken into account at these deep water sites for a global assessment of organic carbon burial fluxes and remineralization.

[The principle of the energy minimum in ontogeny and the channeling of developmental processes].

PubMed

Ozerniuk, N D

1989-01-01

The principle of minimum of energy in ontogenesis has been formulated on the basis of data concerning age changes in energetic metabolism, as well as the influence of ecological factors on this process. According to this principle the smallest expenditures of energy are observed in the zone of the most favorable developmental conditions. The minimal level of energetic metabolism at every developmental stage that corresponds to the most stable state of organism is treated as homeostasis and the developmental stability is treated as homeorrhesis. Regulation mechanisms of energetic metabolism during ontogenesis and under the influence of environmental factors are analyzed.

Hydrothermal alteration mapping using ASTER data in Baogutu porphyry deposit, China

NASA Astrophysics Data System (ADS)

Li, Q.; Zhang, B.; Lu, L.; Lin, Q.

2014-03-01

Remote sensing plays an important role in mineral exploration. One of its proven applications is extracting host-rock lithology and alteration zones that are related to porphyry copper deposits. An Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) was used to map the Baogutu porphyry deposit alteration area. A circular alteration mineral zoning pattern was clearly observed in the classification result of potassic, phyllic, argillic, propylitic zones. The potassic is characterized by biotite and anhydrite with an absorption feature centered at 1.94 and 2.1um. The phyllic zone is characterized by illite and sericite that indicates an intense Al-OH absorption feature centered at 2.20um. The narrower argillic zone including kaolinite and alunite displays a secondary Al-OH absorption feature at 2.17 um. The mineral assemblages of the outer propylitic zone are epidote, chlorite and calcite that exhibit absorption features at 2.335um.The performance of Principal Component Analysis(PCA), Minimum Noise Fraction (MNF), band ratio(BR) and Constrained Energy Minimization(CEM) has been evaluated. These techniques identified new prospects of porphyry copper mineralization in the study areas. These results indicate that ASTER is a powerful tool in the initial steps of mineral exploration.

Late summer metalimnetic oxygen minimum zone in the northern Baltic Sea

NASA Astrophysics Data System (ADS)

Raateoja, M.; Kuosa, H.; Flinkman, J.; Pääkkönen, J.-P.; Perttilä, M.

2010-02-01

The frequently observed, but commonly ignored hydrographic characteristic of the Baltic Sea, the oxygen minimum zone (OMiZ) above and within the summertime thermocline, was studied during the 6-yr monitoring programme encompassing the Gulfs of Bothnia and Finland in the northern Baltic Sea. A temperature-anomaly-driven density gradient was found to be a prerequisite for the existence of the OMiZ. We determined the magnitude of the apparently utilized O 2 in the OMiZ by combining graphical analysis and empirical modelling. A sound criterion for distinguishing the cases in which the OMiZ had a biological origin, and not only a hydrodynamic one, was the accompanying ammonium maximum zone (AMaZ). Of a total of 46 stations visited, a density gradient was found at every station, an accompanying OMiZ at 37 stations, and an accompanying AMaZ at 20 stations. This suggests that biological activity is an essential factor in forming the OMiZ. We investigated to what extent the OMiZ was a manifestation of microbial decomposition of autochthonous organic matter, as zooplankton respiration was also a factor. As a study average, ~ 80% of the apparently utilized O 2 was consumed by the microbial decomposition process and ~ 20% of it by mesozooplankton respiration. According to the O 2 quota consumed in the process, the microbial community in the OMiZ of the Gulf of Finland decomposed, on average, 14% of all the organic matter settling from the euphotic zone in the time frame of mid-June to early August. A pronounced allochthonous organic carbon pool in the Gulf of Bothnia hinders a prompt estimation of a corresponding share for that basin.

Metal Deposition Along the Peru Margin Since the Last Glacial Maximum: Evidence For Regime Change at \\sim 6ka

NASA Astrophysics Data System (ADS)

Tierney, J.; Cleaveland, L.; Herbert, T.; Altabet, M.

2004-12-01

The Peru Margin upwelling zone plays a key role in regulating marine biogeochemical cycles, particularly the fate of nitrate. High biological productivity and low oxygen waters fed into the oxygen minimum zone result in intense denitrification in the modern system, the consequences of which are global in nature. It has been very difficult, however, to study the paleoclimatic history of this region because of the poor preservation of carbonate in Peru Margin sediments. Here we present records of trace metal accumulation from two cores located in the heart of the suboxic zone off the central Peru coast. Chronology comes from multiple AMS 14C dates on the alkenone fraction of the sediment, as well as correlation using major features of the \\delta 15N record in each core. ODP Site 1228 provides a high resolution, continuous sediment record from the Recent to about 14ka, while gravity core W7706-41k extends the record to the Last Glacial Maximum. Both cores were sampled at a 100 yr resolution, then analyzed for % N, \\delta 15N, alkenones, and trace metal concentration. Analysis of redox-sensitive metals (Mo and V) alongside metals associated with changes in productivity (Ni and Zn) provides perspective on the evolution of the upwelling system and distinguishes the two major factors controlling the intensity of the oxygen minimum zone. The trace metal record exhibits a notable increase in the intensity and variability of low oxygen waters and productivity beginning around 6ka and extending to the present. Within this most recent 6ka interval, the data suggest fluctuations in oxygenation and productivity occur on 1000 yr timescales. Our core records, therefore, suggest that the Peru Margin upwelling system strengthened significantly during the mid to late Holocene.

[Characteristics of dissolved organic carbon release under inundation from typical grass plants in the water-level fluctuation zone of the Three Gorges Reservoir area].

PubMed

Tan, Qiu-Xia; Zhu, Boi; Hua, Ke-Ke

2013-08-01

The water-level fluctuation zone of the Three Gorges Reservoir (TGR) exposes in spring and summer, then, green plants especially herbaceous plants grow vigorously. In the late of September, water-level fluctuation zone of TGR goes to inundation. Meanwhile, annually accumulated biomass of plant will be submerged for decaying, resulting in organism decomposition and release a large amount of dissolved organic carbon (DOC). This may lead to negative impacts on water environment of TGR. The typical herbaceous plants from water-level fluctuation zone were collected and inundated in the laboratory for dynamic measurements of DOC concentration of overlying water. According to the determination, the DOC release rates and fluxes have been calculated. Results showed that the release process of DOC variation fitted in a parabolic curve. The peak DOC concentrations emerge averagely in the 15th day of inundation, indicating that DOC released quickly with organism decay of herbaceous plant. The release process of DOC could be described by the logarithm equation. There are significant differences between the concentration of DOC (the maximum DOC concentration is 486.88 mg x L(-1) +/- 35.97 mg x L(-1) for Centaurea picris, the minimum is 4.18 mg x L(-1) +/- 1.07 mg x L(-1) for Echinochloacrus galli) and the release amount of DOC (the maximum is 50.54 mg x g(-1) for Centaurea picris, the minimum is 6.51 mg x g(-1) for Polygonum hydropiper) due to different characteristics of plants, especially, the values of C/N of herbaceous plants. The cumulative DOC release quantities during the whole inundation period were significantly correlated with plants' C/N values in linear equations.

Progressive addition lenses--measurements and ratings.

PubMed

Sheedy, Jim; Hardy, Raymond F; Hayes, John R

2006-01-01

This study is a followup to a previous study in which the optics of several progressive addition lens (PALs) designs were measured and analyzed. The objective was to provide information about various PAL designs to enable eye care practitioners to select designs based on the particular viewing requirements of the patient. The optical properties of 12 lenses of the same power for each of 23 different PAL designs were measured with a Rotlex Class Plus lens analyzer. Lenses were ordered through optical laboratories and specified to be plano with a +2.00 diopters add. Measurements were normalized to plano at the manufacturer-assigned location for the distance power to eliminate laboratory tolerance errors. The magnitude of unwanted astigmatism and the widths and areas of the distance, intermediate, and near viewing zones were calculated from the measured data according to the same criteria used in a previous study. The optical characteristics of the different PAL designs were significantly different from one another. The differences were significant in terms of the sizes and widths of the viewing zones, the amount of unwanted astigmatism, and the minimum fitting height. Ratings of the distance, intermediate, and near viewing areas were calculated for each PAL design based on the widths and sizes of those zones. Ratings for unwanted astigmatism and recommended minimum fitting heights were also determined. Ratings based on combinations of viewing zone ratings are also reported. The ratings are intended to be used to select a PAL design that matches the particular visual needs of the patient and to evaluate the success and performance of currently worn PALs. Reasoning and task analyses suggest that these differences can be used to select a PAL design to meet the individual visual needs of the patient; clinical trials studies are required to test this hypothesis.

Effect of aqueous and alcoholic Stevia (Stevia rebaudiana) extracts against Streptococcus mutans and Lactobacillus acidophilus in comparison to chlorhexidine: An in vitro study

PubMed Central

Ajagannanavar, Sunil Lingaraj; Shamarao, Supreetha; Battur, Hemant; Tikare, Shreyas; Al-Kheraif, Abdulaziz Abdullah; Al Sayed, Mohammed Sayed Al Esawy

2014-01-01

Introduction: Stevia (S. rebaudiana) a herb which has medicinal value and was used in ancient times as a remedy for a great diversity of ailments and sweetener. Leaves of Stevia contain a high concentration of Stevioside and Rebaudioside which are supposed to be sweetening agents. Aim: To compare the efficacy of aqueous and alcoholic S. rebaudiana extract against Streptococcus mutans and Lactobacillus acidophilus in comparison to chlorhexidine. Materials and Methods: In the first part of the study, various concentrations of aqueous and ethanolic Stevia extract were prepared in the laboratory of Pharmacy College. It was then subjected to microbiological assay to determine its zone of inhibition using Agar disk diffusion test and minimum inhibitory concentration (MIC) using serial broth dilution method against Streptococcus mutans and Lactobacillus acidophilus. Chlorhexidine was used as a positive control. One way Analysis of Variance (ANOVA) test was used for multiple group comparisons followed by Tukey post hoc for group wise comparisons. Results: Minimum inhibitory concentration (MIC) of aqueous and ethnolic Stevia extract against Streptococcus mutans and Lactobacillus acidophilus were 25% and 12.5% respectively. Mean zone of inhibition of the aqueous and alcoholic Stevia extracts against Streptococcus mutans at 48 hours were 22.8 mm and 26.7 mm respectively. Mean zone of inhibition of the aqueous and alcoholic Stevia extracts against Lactobacillus acidophilus at 48 hours were 14.4 mm and 15.1 mm respectively. Mean zone of inhibition of the chlorhexidine against Streptococcus mutans and Lactobacillus acidophilus at 48 hours was 20.5 and 13.2 respectively. Conclusion: The inhibitory effect shown by alcoholic Stevia extract against Streptococcus mutans and Lactobacillus acidophilus was superior when compared with that of aqueous form and was inferior when compared with Chlorhexidine. PMID:25558451

In vitro investigation of antimicrobial activities of ethnomedicinal plants against dental caries pathogens.

PubMed

Besra, Mamta; Kumar, Vipin

2018-05-01

The study aimed to evaluate the antimicrobial activity of medicinal plant extracts against the bacterial pathogens prominent in dental caries. A total of 20 plant species (herbs, shrubs and trees) belonging to 18 genera and 15 families were documented for dental caries. Antimicrobial activity of solvent extracts and essential oil from plants were determined by zone of inhibition on the growth of Streptococcus mutans (MTCC 497) and Lactobacillus acidophilus (MTCC 10307) using the agar well diffusion method. The results of in vitro antimicrobial assay prove that methanol is more successful in the extraction of phytochemicals from plant samples than aqueous solvent, as methanol extracts show higher antimicrobial activity than aqueous extracts against both the test pathogens. Methanol extracts of Nigella sativa, Psidium guajava and Syzygium aromaticum were the most effective among all 20 plant samples and have potent inhibitory activity against both dental caries pathogens with minimum inhibitory concentration of 0.2 mg mL - 1 . N. sativa seed methanol extract was more effective with 22.3 mm zone of inhibition at 0.2 mg mL - 1 against S. mutans (MTCC 497), while L. acidophilus (MTCC 10307) was more sensitive to S. aromaticum bud methanol extract at 11.3 mm zone of inhibition at concentration 0.1 mg mL - 1 . Essential oil extracted from plants also possesses strong antimicrobial activity for both test pathogens, with a minimum inhibitory concentration range of 0.05-0.16 mg mL - 1 . Syzygium aromaticum bud essential oil at 0.05 mg mL - 1 was most active against S. mutans (MTCC 497). Plant extracts viewing antimicrobial activity with minimum inhibitory concentration show the efficacy of the plant products that could be considered as a good indicator of prospective plants for discovering new antimicrobial agents against dental caries pathogens. The findings of this study provide a lead to further polyherbal formulations for the treatment of dental caries malaise.

The Water Level and Transport Regimes of the Lower Columbia River

NASA Astrophysics Data System (ADS)

Jay, D. A.

2011-12-01

Tidal rivers are vital, spatially extensive conduits of material from land to sea. Yet the tidal-fluvial regime remains poorly understood relative to the bordering fluvial and estuarine/coastal regimes with which it interacts. The 235km-long Lower Columbia River (LCR) consists of five zones defined by topographic constrictions: a 5km-long ocean-entrance, the lower estuary (15km), an energy-minimum (67km), the tidal river (142km), and a landslide zone (5km). Buoyant plume lift-off occurs within the entrance zone, which is dominated by tidal and wave energy. The lower estuary is strongly tidally, amplifies the semidiurnal tide, and has highly variable salinity intrusion. Tidal and fluvial influences are balanced in the wide energy-minimum, into which salinity intrudes during low-flow periods. It has a turbidity maximum and a dissipation minimum at its lower end, but a water-level variance minimum at its landward end. The tidal river shows a large increase in the ratio of fluvial-to-tidal energy in the landward direction and strong seasonal variations in tidal properties. Because tidal monthly water level variations are large, low waters are higher on spring than neap tides. The steep landslide zone has only weak tides and is the site of the most seaward hydropower dam. Like many dammed systems, the LCR has pseudo-tides: daily and weakly hydropower peaking waves that propagate seaward. Tidal constituent ratios vary in the alongchannel direction due to frictional non-linearities, the changing balance of dissipation vs. propagation, and power peaking. Long-term changes to the system have occurred due to climate change and direct human manipulation. Flood control, hydropower regulation, and diversion have reduced peak flows, total load and sand transport by ~45, 50 and 80%, respectively, causing a blue-shift in the flow and water level power spectra. Overbank flows have been largely eliminated through a redundant combination of diking and flow regulation. Export of sand to the ocean now occurs mainly through dredging, though fine sediment export may be higher than natural levels. Reduced sediment input and navigational development have reduced water levels in the upper tidal river by ~0.4/1.5m during low/high flow periods, impacting both navigation and shallow-water habitat availability. Tidal amplitudes have increased due both to increased coastal tides and reduced friction. This exacerbates difficulties with low-waters during fall neap tides. Climate-induced changes have so far had much less influence on system properties than human modifications. At present, regional sea level (RSL) rise and tectonic change are in balance, yielding no net sea level rise.

Metagenomic insights into important microbes from the Dead Zone

NASA Astrophysics Data System (ADS)

Thrash, C.; Baker, B.; Seitz, K.; Temperton, B.; Gillies, L.; Rabalais, N. N.; Mason, O. U.

2015-12-01

Coastal regions of eutrophication-driven oxygen depletion are widespread and increasing in number. Also known as dead zones, these regions take their name from the deleterious effects of hypoxia (dissolved oxygen less than 2 mg/L) on shrimp, demersal fish, and other animal life. Dead zones result from nutrient enrichment of primary production, concomitant consumption by chemoorganotrophic aerobic microorganisms, and strong stratification that prevents ventilation of bottom water. One of the largest dead zones in the world occurs seasonally in the northern Gulf of Mexico (nGOM), where hypoxia can reach up to 22,000 square kilometers. While this dead zone shares many features with more well-known marine oxygen minimum zones, it is nevertheless understudied with regards to the microbial assemblages involved in biogeochemical cycling. We performed metagenomic and metatranscriptomic sequencing on six samples from the 2013 nGOM dead zone from both hypoxic and oxic bottom waters. Assembly and binning led to the recovery of over fifty partial to nearly complete metagenomes from key microbial taxa previously determined to be numerically abundant from 16S rRNA data, such as Thaumarcheaota, Marine Group II Euryarchaeota, SAR406, SAR324, Synechococcus spp., and Planctomycetes. These results provide information about the roles of these taxa in the nGOM dead zone, and opportunities for comparing this region of low oxygen to others around the globe.

Implications of SHRIMP and microstructural data on the age and kinematics of shearing in the Asir terrane, southern Arabian Shield, Saudi Arabia

USGS Publications Warehouse

Johnson, P.R.; Kattan, F.H.; Wooden, J.L.

2001-01-01

The Asir terrane consists of north-trending belts of variably metamorphosed volcanic, sedimentary, and plutonic rocks that are cut by numerous shear zones (Fig. 1). Previous workers interpreted the shear zones as sutures, structures that modify earlier sutures, or structures that define the margins of tectonic belts across which there are significant lithologic differences and along which there may have been major transposition (Frisch and Al-Shanti, 1977; Greenwood et al., 1982; Brown et al., 1989). SHRIMP data from zircons (Table 1) and sense-of-shear data recently acquired from selected shear zones in the terrane help to constrain the minimum ages and kinematics of these shearing events and lead to an overall model of terrane assembly that is more complex than previously proposed. 

14 CFR 91.1059 - Flight time limitations and rest requirements: One or two pilot crews.

Code of Federal Regulations, 2010 CFR

2010-01-01

... Rest 10 Hours 12 Hours. (6) Minimum After Duty Rest Period for Multi-Time Zone Flights 14 Hours 18... 14 Aeronautics and Space 2 2010-01-01 2010-01-01 false Flight time limitations and rest... OPERATING AND FLIGHT RULES Fractional Ownership Operations Program Management § 91.1059 Flight time...

Extended Plate and Beam Wall System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gunderson, Patti

Home Innovation Research Labs studied the extended plate and beam wall (EP&B) system during a two-year period from mid-2015 to mid-2017 to determine the wall’s structural performance, moisture durability, constructability, and costeffectiveness for use as a high-R enclosure system for energy code minimum and above-code performance in climate zones 4–8.

75 FR 51237 - Fisheries in the Western Pacific; Hawaii Bottomfish and Seamount Groundfish; Management Measures...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-08-19

... armorhead stock is rebuilt, establish a minimum rebuilding time of 35 years for the U.S. portion of the armorhead stock, and classify the portion of the U.S. Exclusive Economic Zone (EEZ) around the Hancock... armorhead stock. DATES: Comments on the amendment must be received by October 18, 2010. ADDRESSES: Comments...

14 CFR Appendix C to Part 121 - C-46 Nontransport Category Airplanes

Code of Federal Regulations, 2010 CFR

2010-01-01

... discharge shall be such as to provide a minimum of one adequate discharge for each designated fire zone... of discharging, e.g., mechanical cutterheads, electric cartridge, or other method; and whether a one- or two-shot system is used; and if the latter is used, means of cross-feeding or otherwise selecting...

Combustor liner construction

NASA Technical Reports Server (NTRS)

Craig, H. M.; Wagner, W. B.; Strock, W. J. (Inventor)

1983-01-01

A combustor liner is fabricated from a plurality of individual segments each containing counter/parallel Finwall material and are arranged circumferentially and axially to define the combustion zone. Each segment is supported by a hook and ring construction to an opened lattice frame with sufficient tolerance between the hook and ring to permit thermal expansion with a minimum of induced stresses.

Efficacy of buffer zones in disconnecting roads and streams in the coastal plain

Treesearch

J.M. III Grace; E. Davis

2010-01-01

Established forest BMPs rely heavily on the forest floor to disconnect upslope activities from stream systems. Optimizing the buffer length required to negate the storm runoff contribution of upslope activities has been a point of interest for soil scientist, hydrologist, and conservation professionals for the last century. Minimum buffer lengths have been recommended...

14 CFR Appendix C to Part 121 - C-46 Nontransport Category Airplanes

Code of Federal Regulations, 2011 CFR

2011-01-01

... Agency is one requiring the landing gear control to be placed in the up position in case of in-flight... airworthiness directives or FAA approved equivalent; and (2) Drain lines from supercharger case, engine-driven... discharge shall be such as to provide a minimum of one adequate discharge for each designated fire zone...

14 CFR Appendix C to Part 121 - C-46 Nontransport Category Airplanes

Code of Federal Regulations, 2012 CFR

2012-01-01

... Agency is one requiring the landing gear control to be placed in the up position in case of in-flight... airworthiness directives or FAA approved equivalent; and (2) Drain lines from supercharger case, engine-driven... discharge shall be such as to provide a minimum of one adequate discharge for each designated fire zone...

14 CFR Appendix C to Part 121 - C-46 Nontransport Category Airplanes

Code of Federal Regulations, 2014 CFR

2014-01-01

... Agency is one requiring the landing gear control to be placed in the up position in case of in-flight... airworthiness directives or FAA approved equivalent; and (2) Drain lines from supercharger case, engine-driven... discharge shall be such as to provide a minimum of one adequate discharge for each designated fire zone...

14 CFR Appendix C to Part 121 - C-46 Nontransport Category Airplanes

Code of Federal Regulations, 2013 CFR

2013-01-01

... Agency is one requiring the landing gear control to be placed in the up position in case of in-flight... airworthiness directives or FAA approved equivalent; and (2) Drain lines from supercharger case, engine-driven... discharge shall be such as to provide a minimum of one adequate discharge for each designated fire zone...

A comparison of the acid-base and aciduric properties of various serotypes of the bacterium Streptococcus mutans associated with dental plaque.

PubMed

Denepitiya, L; Kleinberg, I

1984-01-01

Of the 20 strains tested, Strep. mutans Ingbritt (c), LM-7(e), QP50 -1(f) and K-1R(d/g) produced the largest decreases in pH with glucose, sucrose and starch whereas E-49(a), OMZ-61(a), FA-1(b), BHT(b), GS-5(c) and OMZ-176(d/g) produced the least. In the absence of saliva, catabolism of starch was less than catabolism of either glucose or sucrose but, with saliva present, the differences were considerably reduced. The strains varied in ability to accumulate and degrade stored polysaccharide (a means of producing a more acidic pH), but without relation to serotype. No strains showed pH-rise activity with saliva supernatant, sialin or urea but the b serotypes showed pH rise with arginine and lysylarginine . All strains showed activity from endogenous substrates. Aciduricity was determined by assessing the ability to grow on brain-heart-infusion agar adjusted to pH 5.0 to 7.0. All strains grew better at pH 7.0 than 5.0. Among the least aciduric strains were those of b serotype which being among those least able to decrease the pH with fermentable carbohydrate and the only one to raise pH with arginine and arginine peptide, suggested that this serotype might appear more often in caries-free than in caries-active plaques and in plaques showing a less acidic Stephan pH response. The acid-base and aciduric properties of the non-b serotype strains indicated that any one or more of these could be associated with caries-active plaques.

Effects of extracellular plaque components on the chlorhexidine sensitivity of strains of Streptococcus mutans and human dental plaque

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wolinsky, L.E.; Hume, W.R.

An in vitro study was undertaken to determine the effects of sucrose-derived extracellular plaque components on the sensitivity of selected oral bacteria to chlorhexidine (CX). Cultures of Streptococcus mutans HS-6, OMZ-176, Ingbritt C, 6715-wt13, and pooled human plaque were grown in trypticase soy media with or without 1% sucrose. The sensitivity to CX of bacteria grown in each medium was determined by fixed-time exposure to CX and subsequent measurement of /sup 3/H-thymidine uptake. One-hour exposure to CX at concentrations of 10(-4) M (0.01% w/v) or greater substantially inhibited subsequent cellular division among all the S. mutans strains and human plaquemore » samples tested. An IC50 (the CX concentration which depressed /sup 3/H-thymidine incorporation to 50% of control level) of close to 10(-4) M was noted for S. mutans strains HS-6, OMZ-176, and 6715-wt13 when grown in the presence of sucrose. The same strains grown in cultures without added sucrose showed about a ten-fold greater sensitivity to CX (IC50 close to 10(-5) M). A three-fold difference was noted for S. mutans Ingbritt C. Only a slight increase in the IC50 was noted for the plaque samples cultured in sucrose-containing media, but their threshold for depression of /sup 3/H-thymidine uptake by CX was lower than that for the sucrose-free plaque samples. The study showed that extracellular products confer some protection against CX to the bacteria examined, and provided an explanation for the disparity between clinically-recommended concentrations for plaque suppression and data on in vitro susceptibility.« less

Identification of Arbitrary Zonation in Groundwater Parameters using the Level Set Method and a Parallel Genetic Algorithm

NASA Astrophysics Data System (ADS)

Lei, H.; Lu, Z.; Vesselinov, V. V.; Ye, M.

2017-12-01

Simultaneous identification of both the zonation structure of aquifer heterogeneity and the hydrogeological parameters associated with these zones is challenging, especially for complex subsurface heterogeneity fields. In this study, a new approach, based on the combination of the level set method and a parallel genetic algorithm is proposed. Starting with an initial guess for the zonation field (including both zonation structure and the hydraulic properties of each zone), the level set method ensures that material interfaces are evolved through the inverse process such that the total residual between the simulated and observed state variables (hydraulic head) always decreases, which means that the inversion result depends on the initial guess field and the minimization process might fail if it encounters a local minimum. To find the global minimum, the genetic algorithm (GA) is utilized to explore the parameters that define initial guess fields, and the minimal total residual corresponding to each initial guess field is considered as the fitness function value in the GA. Due to the expensive evaluation of the fitness function, a parallel GA is adapted in combination with a simulated annealing algorithm. The new approach has been applied to several synthetic cases in both steady-state and transient flow fields, including a case with real flow conditions at the chromium contaminant site at the Los Alamos National Laboratory. The results show that this approach is capable of identifying the arbitrary zonation structures of aquifer heterogeneity and the hydrogeological parameters associated with these zones effectively.

The effect of substrate, season, and agroecological zone on mycoflora and aflatoxin contamination of poultry feed from Khyber Pakhtunkhwa, Pakistan.

PubMed

Alam, Sahib; Shah, Hamid Ullah; Khan, Habibullah; Magan, Naresh

2012-10-01

To study the effects of and interactions among feed types, seasons, and agroecological zones on the total fungal viable count and aflatoxins B1 (AFB1), B2 (AFB2), G1 (AFG1), and G2 (AFG2) production in poultry feed, an experiment was conducted using three-factorial design. A total of 216 samples of poultry feed ingredients, viz. maize, wheat, rice, cotton seed meal (CSM), and finished products, that is, starter and finisher broilers' rations, were collected from Peshawar, Swat, and D. I. Khan districts of Khyber Pakhtunkhwa, Pakistan, during the winter, spring, summer, and autumn seasons of the year 2007/2008. Analysis of variance showed that there was a complex interaction among all these factors and that this influenced the total fungal viable count and relative concentrations of the aflatoxins produced. Minimum total culturable fungi (6.43 × 10³ CFUs/g) were counted in CSM from D. I. Khan region in winter season while maximum (26.68 × 10³ CFUs/g) in starter ration from Peshawar region in summer. Maximum concentrations of AFB1 (191.65 ng/g), AFB2 (86.85 ng/g), and AFG2 (89.90 ng/g) were examined during the summer season whereas the concentration of AFG1 was maximum (167.82 ng/g) in autumn in finisher ration from Peshawar region. Minimum aflatoxins were produced in the winter season across all the three agroecological zones.

Gas centrifuge purge method

DOEpatents

Theurich, Gordon R.

1976-01-01

1. In a method of separating isotopes in a high speed gas centrifuge wherein a vertically oriented cylindrical rotor bowl is adapted to rotate about its axis within an evacuated chamber, and wherein an annular molecular pump having an intake end and a discharge end encircles the uppermost portion of said rotor bowl, said molecular pump being attached along its periphery in a leak-tight manner to said evacuated chamber, and wherein end cap closure means are affixed to the upper end of said rotor bowl, and a process gas withdrawal and insertion system enters said bowl through said end cap closure means, said evacuated chamber, molecular pump and end cap defining an upper zone at the discharge end of said molecular pump, said evacuated chamber, molecular pump and rotor bowl defining a lower annular zone at the intake end of said molecular pump, a method for removing gases from said upper and lower zones during centrifuge operation with a minimum loss of process gas from said rotor bowl, comprising, in combination: continuously measuring the pressure in said upper zone, pumping gas from said lower zone from the time the pressure in said upper zone equals a first preselected value until the pressure in said upper zone is equal to a second preselected value, said first preselected value being greater than said second preselected value, and continuously pumping gas from said upper zone from the time the pressure in said upper zone equals a third preselected value until the pressure in said upper zone is equal to a fourth preselected value, said third preselected value being greater than said first, second and fourth preselected values.

TECHNICAL BASIS DOCUMENT OF MARSSIM FIELD CALIBRATION FOR QUANTIFICATION OF CS-137 VOLUMETRICALLY CONTAMINTED SOILS IN THE BC CONTROLLED AREA USING A 4 BY 4 BY 16 INCH SODIUM IODIDE DETECTOR

DOE Office of Scientific and Technical Information (OSTI.GOV)

PAPPIN JL

The purpose of this paper is to provide the Technical Basis and Documentation for Field Calibrations of radiation measurement equipment for use in the MARSSIM Seeping Surveys of the BC Controlled Area (BCCA). The Be Controlled Area is bounded on tt1e north by (but does not include) the BCCribs & Trenches and is bounded on the south by Army Loop Road. Parts of the BC Controlled Area are posted as a Contamination Area and the remainder is posted as a Soil Contamination Area. The area is approximately 13 square miles and divided into three zones (Zone A , Zone B.more » and Zone C). A map from reference 1 which shows the 3 zones is attached. The MARSSIM Scoping Surveys are intended 10 better identify the boundaries of the three zones based on the volumetric (pCi/g) contamination levels in the soil. The MARSSIM Field Calibration. reference 2. of radiation survey instrumentation will determine the Minimum Detectable Concentration (MDC) and an algorithm for converting counts to pCi/g. The instrumentation and corresponding results are not intended for occupational radiation protection decisions or for the release of property per DOE Order 5400.5.« less

Design and fabrication of the progressive addition lenses

NASA Astrophysics Data System (ADS)

Qin, Linling; Qian, Lin; Yu, Jingchi

2011-11-01

The use of progressive addition lenses (PALs) for the correction of presbyopia has increased dramatically in recent years. These lenses are now being used as the preferred alternative to bifocal and trifocal lenses in many parts of the world. Progressive addition lenses are a kind of opthalmic lenses with freeform surface. The surface curvature of the Progressive addition lenses varies gradually from a minimum value in the upper area, to a maximum value in the lower area. Thus a PAL has a surface with three zones which have very small astigmatism: far-view zone, near-view zone, and intermediate zone. The far view zone and near view zone have relatively constant powers and connected by the intermediate zone with power varies progressively. The design and fabrication technologies of progressive addition lenses have fast progresses because of the massive development of the optical simulation software, multi-axis ultraprecision machining technologies and CNC machining technologies. The design principles of progressive addition lenses are discussed in a historic review. Several kinds of design methods are illustrated, and their advantages and disadvantages are also represented. In the current study, it is shown that the optical characteristics of the different progressive addition lenses designs are significantly different from one another. The different fabrication technologies of Progressive addition lenses are also discussed in the paper. Plastic injection molding and precision-machine turning are the common fabrication technologies for exterior PALs and Interior PALs respectively.

Mechanical evolution of transpression zones affected by fault interactions: Insights from 3D elasto-plastic finite element models

NASA Astrophysics Data System (ADS)

Nabavi, Seyed Tohid; Alavi, Seyed Ahmad; Mohammadi, Soheil; Ghassemi, Mohammad Reza

2018-01-01

The mechanical evolution of transpression zones affected by fault interactions is investigated by a 3D elasto-plastic mechanical model solved with the finite-element method. Ductile transpression between non-rigid walls implies an upward and lateral extrusion. The model results demonstrate that a, transpression zone evolves in a 3D strain field along non-coaxial strain paths. Distributed plastic strain, slip transfer, and maximum plastic strain occur within the transpression zone. Outside the transpression zone, fault slip is reduced because deformation is accommodated by distributed plastic shear. With progressive deformation, the σ3 axis (the minimum compressive stress) rotates within the transpression zone to form an oblique angle to the regional transport direction (∼9°-10°). The magnitude of displacement increases faster within the transpression zone than outside it. Rotation of the displacement vectors of oblique convergence with time suggests that transpression zone evolves toward an overall non-plane strain deformation. The slip decreases along fault segments and with increasing depth. This can be attributed to the accommodation of bulk shortening over adjacent fault segments. The model result shows an almost symmetrical domal uplift due to off-fault deformation, generating a doubly plunging fold and a 'positive flower' structure. Outside the overlap zone, expanding asymmetric basins subside to 'negative flower' structures on both sides of the transpression zone and are called 'transpressional basins'. Deflection at fault segments causes the fault dip fall to less than 90° (∼86-89°) near the surface (∼1.5 km). This results in a pure-shear-dominated, triclinic, and discontinuous heterogeneous flow of the transpression zone.

Fault zone architecture within Miocene-Pliocene syn-rift sediments, Northwestern Red Sea, Egypt

NASA Astrophysics Data System (ADS)

Zaky, Khairy S.

2017-04-01

The present study focusses on field description of small normal fault zones in Upper Miocene-Pliocene sedimentary rocks on the northwestern side of the Red Sea, Egypt. The trend of these fault zones is mainly NW-SE. Paleostress analysis of 17 fault planes and slickenlines indicate that the tension direction is NE-SW. The minimum ( σ3) and intermediate ( σ2) paleostress axes are generally sub-horizontal and the maximum paleostress axis ( σ1) is sub-vertical. The fault zones are composed of damage zones and fault core. The damage zone is characterized by subsidiary faults and fractures that are asymmetrically developed on the hanging wall and footwall of the main fault. The width of the damage zone varies for each fault depending on the lithology, amount of displacement and irregularity of the fault trace. The average ratio between the hanging wall and the footwall damage zones width is about 3:1. The fault core consists of fault gouge and breccia. It is generally concentrated in a narrow zone of ˜0.5 to ˜8 cm width. The overall pattern of the fault core indicates that the width increases with increasing displacement. The faults with displacement < 1 m have fault cores ranging from 0.5 to 4.0 cm, while the faults with displacements of > 2 m have fault cores ranging from 4.0 to 8.0 cm. The fault zones are associated with sliver fault blocks, clay smear, segmented faults and fault lenses' structural features. These features are mechanically related to the growth and linkage of the fault arrays. The structural features may represent a neotectonic and indicate that the architecture of the fault zones is developed as several tectonic phases.

The impact of radiation belts region on top side ionosphere condition during last solar minimum.

NASA Astrophysics Data System (ADS)

Rothkaehl, Hanna; Przepiórka, Dororta; Matyjasiak, Barbara

2014-05-01

The wave particle interactions in radiation belts region are one of the key parameters in understanding the global physical processes which govern the near Earth environment. The populations of outer radiation belts electrons increasing in response to changes in the solar wind and the interplanetary magnetic field, and decreasing as a result of scattering into the loss cone and subsequent absorption by the atmosphere. The most important question in relation to understanding the physical processes in radiation belts region relates to estimate the ratio between acceleration and loss processes. This can be also very useful for construct adequate models adopted in Space Weather program. Moreover the wave particle interaction in inner radiation zone and in outer radiation zone have significant influence on the space plasma property at ionospheric altitude. The aim of this presentation is to show the manifestation of radiation belts region at the top side ionosphere during the last long solar minimum. The presentation of longitude and seasonal changes of plasma parameters affected by process occurred in radiation belts region has been performed on the base of the DEMETER and COSMIC 3 satellite registration. This research is partly supported by grant O N517 418440

Mesoscale Activity and Nitrogen-loss in the Oxygen Minimum Zone of the Eastern Tropical Pacific During ENSO Conditions

NASA Astrophysics Data System (ADS)

Montes, I.; Dewitte, B.; Gutknecht, E.; Paulmier, A.; Dadou, I.; Oschlies, A.; Garçon, V. C.

2015-12-01

The Eastern Tropical South Pacific encompasses one of the most extended Oxygen Minimum zones, which is mainly maintained by a combination of sluggish circulation and high biological productivity in the surface layer leading to elevate organic matter decomposition consuming dissolved oxygen. Low-oxygen areas are important not only for macroorganisms that cannot survive in oxygen-poor conditions, but also because of special biogeochemical processes occurring at low oxygen concentrations. In particular, a large fraction of oceanic nitrogen-loss occurs in these areas via anaerobic microbial processes. These include denitrification and axammox that both lead to a net loss of fixed nitrogen once oxygen concentrations have fallen below some threshold of a few umol/l. Recently it has been found that eddies may act as nitrogen-loss hotspots, possibly by shielding enclosed water parcels from lateral mixing with better ventilated oxygen-richer waters outside the eddies. Here we used a regional coupled biogeochemical model to investigate the relationship between eddies and the nitrogen-loss. We also investigate the mechanisms responsible for the generation of eddies and for possible modulations of eddy activity on interannual timescales, in particular during cold and warm phases of the El Nino Southern Oscillation.

Inter-decadal changes in the intensity of the Oxygen Minimum Zone off Concepción, Chile (~ 36° S) over the last century

NASA Astrophysics Data System (ADS)

Srain, B.; Pantoja, S.; Sepúlveda, J.; Lange, C. B.; Muñoz, P.; Summons, R. E.; McKay, J.; Salamanca, M.

2015-04-01

We reconstructed oxygenation changes in the Oxygen Minimum Zone of the upwelling ecosystem off Concepción (36° S), Chile, using inorganic and organic proxies in a sediment core covering the last ca. 110 years of sedimentation in this area. Authigenic enrichments of Mo, U and Cd were observed between ca. 1935-1971 CE indicating a prolonged period of more reduced conditions in bottom waters and surface sediments. Significant positive correlations (p < 0.05; Spearman) between redox sensitive metals, algal sterols, biomarkers of anaerobic microorganisms, and archaeal glycerol dialkyl glycerol tetraether indicated a coupling among bottom water oxygen depletion, and increased primary and export production, suggesting that the period with low O2 of ca. 35 years, follows low frequency inter-decadal variation of the Pacific Decadal Oscillation, which may have resulted in O2 depletion over the entire continental shelf off Concepción. Taken together with the concurrent increase in sedimentary molecular indicators of anaerobic microbes allow us to suggest that the prokaryote community has been influenced by changes in oxygenation of the water column.

Nitrous oxide as a function of oxygen and archaeal gene abundance in the North Pacific

NASA Astrophysics Data System (ADS)

Trimmer, Mark; Chronopoulou, Panagiota-Myrsini; Maanoja, Susanna T.; Upstill-Goddard, Robert C.; Kitidis, Vassilis; Purdy, Kevin J.

2016-12-01

Oceanic oxygen minimum zones are strong sources of the potent greenhouse gas N2O but its microbial source is unclear. We characterized an exponential response in N2O production to decreasing oxygen between 1 and 30 μmol O2 l-1 within and below the oxycline using 15NO2-, a relationship that held along a 550 km offshore transect in the North Pacific. Differences in the overall magnitude of N2O production were accounted for by archaeal functional gene abundance. A one-dimensional (1D) model, parameterized with our experimentally derived exponential terms, accurately reproduces N2O profiles in the top 350 m of water column and, together with a strong 45N2O signature indicated neither canonical nor nitrifier-denitrification production while statistical modelling supported production by archaea, possibly via hybrid N2O formation. Further, with just archaeal N2O production, we could balance high-resolution estimates of sea-to-air N2O exchange. Hence, a significant source of N2O, previously described as leakage from bacterial ammonium oxidation, is better described by low-oxygen archaeal production at the oxygen minimum zone's margins.

Phylogenetic analyses and nitrate-reducing activity of fungal cultures isolated from the permanent, oceanic oxygen minimum zone of the Arabian Sea.

PubMed

Manohar, Cathrine Sumathi; Menezes, Larissa Danielle; Ramasamy, Kesava Priyan; Meena, Ram M

2015-03-01

Reports on the active role of fungi as denitrifiers in terrestrial ecosystems have stimulated an interest in the study of the role of fungi in oxygen-deficient marine systems. In this study, the culturable diversity of fungi was investigated from 4 stations within the permanent, oceanic, oxygen minimum zone of the Arabian Sea. The isolated cultures grouped within the 2 major fungal phyla Ascomycota and Basidiomycota; diversity estimates in the stations sampled indicated that the diversity of the oxygen-depleted environments is less than that of mangrove regions and deep-sea habitats. Phylogenetic analyses of 18S rRNA sequences revealed a few divergent isolates that clustered with environmental sequences previously obtained by others. This is significant, as these isolates represent phylotypes that so far were known only from metagenomic studies and are of phylogenetic importance. Nitrate reduction activity, the first step in the denitrification process, was recorded for isolates under simulated anoxic, deep-sea conditions showing ecological significance of fungi in the oxygen-depleted habitats. This report increases our understanding of fungal diversity in unique, poorly studied habitats and underlines the importance of fungi in the oxygen-depleted environments.

Thermal characteristics of wild and captive Micronesian Kingfisher nesting habitats

USGS Publications Warehouse

Kesler, Dylan C.; Haig, Susan M.

2004-01-01

To provide information for managing the captive population of endangered Guam Micronesian kingfishers (Halcyon cinnamomina cinnamomina), four biologically relevant thermal metrics were compared among captive facilities on the United States mainland and habitats used by wild Micronesian kingfishers on the island of Pohnpei (H. c. reichenbachii), Federated States of Micronesia. Additionally, aviaries where kingfishers laid eggs were compared to those in which birds did not attempt to breed. Compared to aviaries, habitats used by wild Pohnpei kingfishers had 3.2A?C higher daily maximum and minimum temperatures and the proportion of time when temperatures were in the birds' thermoneutral zone was 45% greater. No differences were found in the magnitude of temperature fluctuation in captive and wild environments. In captive environments in which birds bred, daily maximum temperatures were 2.1A?C higher and temperatures were within the thermoneutral zone 25% more often than in the aviaries where the kingfishers did not breed. No differences were found in the magnitude of temperature fluctuation or the daily minimum temperature. Results suggest that the thermal environment has the potential to influence reproduction, and that consideration should be given to increasing temperatures in captive breeding facilities to improve propagation of the endangered Micronesian kingfisher.

Microstructural evidence for northeastward movement on the Chocolate Mountains fault zone, southeastern California

DOE Office of Scientific and Technical Information (OSTI.GOV)

Simpson, C.

1990-01-10

Microstructural analysis of rocks from the Chocolate Mountains fault zone, Gavilan Hills area, southeastern California, show unequivocal evidence for northeast directed transport of the upper plate gneisses over lower plate Orocopia schists. Samples were taken from transects through the fault zone. Prefaulting fabrics in upper plate gneisses show a strong component of northeast directed rotational deformation under lower amphibolite facies conditions. In contrast, prefaulting lower plate Orocopia schists show strongly coaxial fabrics (minimum stretch value of 2.2) formed at greenschist grade. Mylonitic fabrics associated with the Chocolate Mountains fault are predominantly northeast directed shear bands that are unidirectional (northeastward) inmore » the gneisses but bi-directional in the schists, suggesting a significant component of nonrotational deformation occurred in the Orocopia schists during and after emplacement of the upper plate. The kinematic findings are in agreement with Dillon et al. (1989), who found that the vergence of asymmetrical folds within the fault zone indicates overthrusting to the northeast, toward the craton, in this region. The available evidence favors a single protracted northeastward movement on the Chocolate Mountains fault zone with temperatures waning as deformation proceeded.« less

Fabric transition with dislocation creep of a carbonate fault zone in the brittle regime

NASA Astrophysics Data System (ADS)

Kim, Sungshil; Ree, Jin-Han; Han, Raehee; Kim, Nahyeon; Jung, Haemyeong

2018-01-01

Fabric transition by a switch in the dominant slip system of minerals in the plastic regime can be induced by changes in temperature, strain rate, or water content. We propose here this fabric transition by frictional heating in seismogenic fault zones in the brittle regime. The Garam Thrust in the Taebaeksan Basin of South Korea has a hanging wall of Cambrian dolostone juxtaposed against a footwall of Ordovician limestone and records a minimum displacement of 120 m. In a 10 cm thick plastically deformed layer adjacent to the principal slip layer of the fault zone, the lattice preferred orientation of calcite grains suggests that the dominant slip system changes, approaching the principal slip layer, from r 〈02-21〉 and e-twinning, through r 〈02-21〉 and basal 〈a〉, to basal 〈a〉. This fabric transition requires a high temperature-gradient of 40 °C/cm, which we infer to result from frictional heating of the seismic fault zone. We suggest that fabric transition within a thin plastically deformed layer adjacent to the principal slip layer of a fault zone indicates an unusually steep temperature gradient and provides strong evidence of seismic slip.

Internal tectonic structure of the Central American Wadati-Benioff zone based on analysis of aftershock sequences

NASA Astrophysics Data System (ADS)

Å PičáK, Aleš; Hanuš, VáClav; VaněK, JiřÃ.­; BěHounková, Marie

2007-09-01

Relocated Engdahl et al. (1998) global seismological data for 10 aftershock sequences were used to analyze the internal tectonic structure of the Central American subduction zone; the main shocks of several of these were the most destructive and often referenced earthquakes in the region (e.g., the 1970 Chiapas, 1983 Osa, 1992 Nicaragua, 1999 Quepos, 2001 El Salvador earthquakes). The spatial analysis of aftershock foci distribution was performed in a rotated Cartesian coordinate system (x, y, z) related to the Wadati-Benioff zone, and not in a standard coordinate system (ϕ, λ, h are latitude, longitude, focal depth, respectively). Available fault plane solutions were also transformed into the plane approximating the Wadati-Benioff zone. The spatial distribution of earthquakes in each aftershock sequence was modeled as either a plane fit using a least squares approximation or a volume fit with a minimum thickness rectangular box. The analysis points to a quasi-planar distribution of earthquake foci in all aftershock sequences, manifesting the appurtenance of aftershocks to fracture zones. Geometrical parameters of fracture zones (strike, dip, and dimensions) hosting individual sequences were calculated and compared with the seafloor morphology of the Cocos Plate. The smooth character of the seafloor correlates with the aftershock fracture zones oriented parallel to the trench and commonly subparallel to the subducting slab, whereas subduction of the Cocos Ridge and seamounts around the Quepos Plateau coincides with steeply dipping fracture zones. Transformed focal mechanisms are almost exclusively (>90%) of normal character.

Internal tectonic structure of the Central American Wadati-Benioff zone based on analysis of aftershock sequences

NASA Astrophysics Data System (ADS)

Špičák, Aleš; Hanuš, Václav; Vaněk, Jiří; Běhounková, Marie

2007-09-01

Relocated Engdahl et al. (1998) global seismological data for 10 aftershock sequences were used to analyze the internal tectonic structure of the Central American subduction zone; the main shocks of several of these were the most destructive and often referenced earthquakes in the region (e.g., the 1970 Chiapas, 1983 Osa, 1992 Nicaragua, 1999 Quepos, 2001 El Salvador earthquakes). The spatial analysis of aftershock foci distribution was performed in a rotated Cartesian coordinate system (x, y, z) related to the Wadati-Benioff zone, and not in a standard coordinate system ($\\varphi$, λ, h are latitude, longitude, focal depth, respectively). Available fault plane solutions were also transformed into the plane approximating the Wadati-Benioff zone. The spatial distribution of earthquakes in each aftershock sequence was modeled as either a plane fit using a least squares approximation or a volume fit with a minimum thickness rectangular box. The analysis points to a quasi-planar distribution of earthquake foci in all aftershock sequences, manifesting the appurtenance of aftershocks to fracture zones. Geometrical parameters of fracture zones (strike, dip, and dimensions) hosting individual sequences were calculated and compared with the seafloor morphology of the Cocos Plate. The smooth character of the seafloor correlates with the aftershock fracture zones oriented parallel to the trench and commonly subparallel to the subducting slab, whereas subduction of the Cocos Ridge and seamounts around the Quepos Plateau coincides with steeply dipping fracture zones. Transformed focal mechanisms are almost exclusively (>90%) of normal character.

High Temperature Mechanical Behavior of MgAl2O4-YAG Eutectic Ceramic In Situ Composites by Float Zone Method

NASA Astrophysics Data System (ADS)

Abalı, Serkan

2017-09-01

The directionally solidified eutectic MgAl2O4-Y3Al5O12 crystal was prepared at a pressure of 0.4 MPa of ambient nitrogen gas by the high frequency induction heated floating zone furnace. In order to determine the high temperature characteristics, directionally solidified MgAl2O4-Y3Al5O12 eutectic phase has been analyzed with creep test, tensile strength, young modulus and fracture toughness at the various temperatures and the microstructural variations have been studied according to the analysis results. It has been seen that directionally solidified with zone melting MgAl2O4-YAG eutectic ceramic which has given the value of 168 MPa below 10-6/s strain rate at 1,700 °C temperature has revealed minimum stress.

Benthic foraminifera records in marine sediments during the Holocene from Pescadero basin, Gulf of California, Mexico

NASA Astrophysics Data System (ADS)

Valdez, M.; Perez-Cruz, L. L.; Roy, P.; Monreal, M.; Fenero, R.

2013-05-01

Gravity core T-56 (256 cm length) was collected in Pescadero Basin located on the western side of the Gulf of California within the oxygen minim zone (OMZ) at 597 cm depth, aboard of the R/V "El Puma". Pescadero basin is located at mouth of the gulf; because of its location is sensitive to record the changes in the gulf and in the Eastern Pacific Ocean. The sedimentary sequence is analyzed to contribute to the understanding the oceanographic variability in the southern part of the gulf of California during the Holocene using benthic foraminifera assemblages and organic carbon as proxies of organic matter flux and bottom water oxygenation. In general, the core is characterized by silty-clay sediments, and it exhibits a turbidite between 198 and 134 cm, distinguished by sandy sediments and reworking material. From 134 cm to the top shows a visible laminated structure. The initial chronology is based on three AMS radiocarbon dates, and estimated sedimentation rates are 0.22 and 0.19 mm/yr for the first 32 cm of the core. Six radiocarbon dates are in progress. Preliminary results of benthic foraminiferal assemblages showed that species of Bolivina are dominated, mainly megalospheric forms, from 134 cm to top of the core. They are small and thin-shelled forms (e.g., Bolivina subadvena, Bolivina minuta, Bolivina seminuda, Bolivina plicata), and also Buliminella, Cassidulina and Epistominella are abundant. In particular, species of Bolivina are environmental indicators and exhibit a typical reproductive dimorphism. The predominance of the genus Bolivina suggest organic flux variations, because of the productivity changes that might be related to changes in ocean circulation and in the environmental variability in the region.

Photovoltaic systems sizing for Algeria

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arab, A.H.; Driss, B.A.; Amimeur, R.

1995-02-01

The purpose of this work is to develop an optimization method applicable to stand-alone photovoltaic systems as a function of its reliability. For a given loss-of-load probability (LLP), there are many combinations of battery capacity and photovoltaic array peak power. The problem consists in determining the couple which corresponds to a minimum total system cost. The method has been applied to various areas all over Algeria taking into account various climatic zones. The parameter used to define the different climatic zones is the clearness index KT for all the considered sites. The period of the simulation system is 10 years.more » 5 refs., 4 figs., 5 tabs.« less

PLANETESIMAL FORMATION IN MAGNETOROTATIONALLY DEAD ZONES: CRITICAL DEPENDENCE ON THE NET VERTICAL MAGNETIC FLUX

DOE Office of Scientific and Technical Information (OSTI.GOV)

Okuzumi, Satoshi; Hirose, Shigenobu, E-mail: okuzumi@nagoya-u.jp

Turbulence driven by magnetorotational instability (MRI) affects planetesimal formation by inducing diffusion and collisional fragmentation of dust particles. We examine conditions preferred for planetesimal formation in MRI-inactive 'dead zones' using an analytic dead-zone model based on our recent resistive MHD simulations. We argue that successful planetesimal formation requires not only a sufficiently large dead zone (which can be produced by tiny dust grains) but also a sufficiently small net vertical magnetic flux (NVF). Although often ignored, the latter condition is indeed important since the NVF strength determines the saturation level of turbulence in MRI-active layers. We show that direct collisionalmore » formation of icy planetesimal across the fragmentation barrier is possible when the NVF strength is lower than 10 mG (for the minimum-mass solar nebula model). Formation of rocky planetesimals via the secular gravitational instability is also possible within a similar range of the NVF strength. Our results indicate that the fate of planet formation largely depends on how the NVF is radially transported in the initial disk formation and subsequent disk accretion processes.« less

Estimation of minimum ventilation requirement of dairy cattle barns for different outdoor temperature and its affects on indoor temperature: Bursa case.

PubMed

Yaslioglu, Erkan; Simsek, Ercan; Kilic, Ilker

2007-04-15

In the study, 10 different dairy cattle barns with natural ventilation system were investigated in terms of structural aspects. VENTGRAPH software package was used to estimate minimum ventilation requirements for three different outdoor design temperatures (-3, 0 and 1.7 degrees C). Variation in indoor temperatures was also determined according to the above-mentioned conditions. In the investigated dairy cattle barns, on condition that minimum ventilation requirement to be achieved for -3, 0 and 1.7 degrees C outdoor design temperature and 70, 80% Indoor Relative Humidity (IRH), estimated indoor temperature were ranged from 2.2 to 12.2 degrees C for 70% IRH, 4.3 to 15.0 degrees C for 80% IRH. Barn type, outdoor design temperature and indoor relative humidity significantly (p < 0.01) affect the indoor temperature. The highest ventilation requirement was calculated for straw yard (13879 m3 h(-1)) while the lowest was estimated for tie-stall (6169.20 m3 h(-1)). Estimated minimum ventilation requirements per animal were significantly (p < 0.01) different according to the barn types. Effect of outdoor esign temperatures on minimum ventilation requirements and minimum ventilation requirements per animal was found to be significant (p < 0.05, p < 0.01). Estimated indoor temperatures were in thermoneutral zone (-2 to 20 degrees C). Therefore, one can be said that use of naturally ventilated cold dairy barns in the region will not lead to problems associated with animal comfort in winter.