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Sample records for moti yung dongdai

  1. QuasiMotiFinder: protein annotation by searching for evolutionarily conserved motif-like patterns.

    PubMed

    Gutman, Roee; Berezin, Carine; Wollman, Roy; Rosenberg, Yossi; Ben-Tal, Nir

    2005-07-01

    Sequence signature databases such as PROSITE, which include amino acid segments that are indicative of a protein's function, are useful for protein annotation. Lamentably, the annotation is not always accurate. A signature may be falsely detected in a protein that does not carry out the associated function (false positive prediction, FP) or may be overlooked in a protein that does carry out the function (false negative prediction, FN). A new approach has emerged in which a signature is replaced with a sequence profile, calculated based on multiple sequence alignment (MSA) of homologous proteins that share the same function. This approach, which is superior to the simple pattern search, essentially searches with the sequence of the query protein against an MSA library. We suggest here an alternative approach, implemented in the QuasiMotiFinder web server (http://quasimotifinder.tau.ac.il/), which is based on a search with an MSA of homologous query proteins against the original PROSITE signatures. The explicit use of the average evolutionary conservation of the signature in the query proteins significantly reduces the rate of FP prediction compared with the simple pattern search. QuasiMotiFinder also has a reduced rate of FN prediction compared with simple pattern searches, since the traditional search for precise signatures has been replaced by a permissive search for signature-like patterns that are physicochemically similar to known signatures. Overall, QuasiMotiFinder and the profile search are comparable to each other in terms of performance. They are also complementary to each other in that signatures that are falsely detected in (or overlooked by) one may be correctly detected by the other.

  2. Assessing the Efficacy of MOTI-4 for Reducing the Use of Cannabis Among Youth in the Netherlands: A Randomized Controlled Trial.

    PubMed

    Dupont, Hans B; Candel, Math J J M; Kaplan, Charles D; van de Mheen, Dike; de Vries, Nanne K

    2016-06-01

    The Moti-4 intervention, in which motivational interviewing, self-monitoring, and strengthening behavioral control are used, was developed in the Netherlands in response to several rapid assessments of problematic use of cannabis among vulnerable adolescents. The main goal of the study reported in this article was to determine whether the Moti-4 intervention was able to reduce two outcome measures pertaining to the level of cannabis use; the amount of Euros spent a week on cannabis and the mean number of cannabis joints (cigarettes) smoked in a week. In a randomized controlled trial (RCT) with a 6-month follow-up, 27 trained Dutch prevention workers recruited 71 Moti-4 participants and 60 controls assigned to usual care. Participants were Dutch youth aged 14-24 years who had used cannabis during the preceding month. At baseline (T0), post-test (T1) and 6-month follow-up (T2), participants completed a questionnaire with 51 items. The 27 prevention workers also completed a checklist to assess the fidelity of delivering each item to each participant in the Moti-4 protocol. Multilevel and binary logistic regression was used to assess the impact of the prevention worker and 14 participant variables on the likelihood of drop-out. Mean scores for cannabis use outcome measures by Moti-4 participants and controls at baseline, T1 and T2 were compared using paired sample t-tests. Top-down multiple regression was used to assess relationships between Moti-4 and 13 other variables on the one hand and changes in weekly cannabis use at T1 and T2 on the other. The Moti-4 experimental condition had a significant and positive influence in reducing the level of expenditure on cannabis (p<0.05). There was no significant difference in outcome, neither for the 4 participating institutes nor for the professionals implementing the intervention. Baseline cannabis use was the strongest predictor (p<0.001) of weekly cannabis expenditure at posttest and 6-month follow-up. This effect was still

  3. Crystallization and preliminary X-ray analysis of MotY, a stator component of the Vibrio alginolyticus polar flagellar motor.

    PubMed

    Shinohara, Akari; Sakuma, Mayuko; Yakushi, Toshiharu; Kojima, Seiji; Namba, Keiichi; Homma, Michio; Imada, Katsumi

    2007-02-01

    The polar flagellum of Vibrio alginolyticus is rotated by the sodium motor. The stator unit of the sodium motor consists of four different proteins: PomA, PomB, MotX and MotY. MotX and MotY, which are unique components of the sodium motor, form the T-ring structure attached to the LP ring in the periplasmic space. MotY has a putative peptidoglycan-binding motif in its C-terminal region and MotX is suggested to interact with PomB. Thus, MotX and MotY are thought to be required for incorporation and stabilization of the PomA/B complex. In this study, mature MotY composed of 272 amino-acid residues and its SeMet derivative were expressed with a C-terminal hexahistidine-tag sequence, purified and crystallized. Native crystals were grown in the hexagonal space group P6(1)22/P6(5)22, with unit-cell parameters a = b = 104.1, c = 132.6 A. SeMet-derivative crystals belonged to the same space group with the same unit-cell parameters as the native crystals. Anomalous difference Patterson maps of the SeMet derivative showed significant peaks in their Harker sections, indicating that the derivatives are suitable for structure determination.

  4. Combining Persuasive Technology With Behavioral Theory to Support Weight Maintenance Through a Mobile Phone App: Protocol for the MotiMate App

    PubMed Central

    Hendrie, Gilly A; Freyne, Jill

    2016-01-01

    Background The prevalence of health-focused mobile phone apps available for download increases daily, with weight management apps being among the most proliferative. However, most lack theoretic grounding or evidence of efficacy. There is a significant body of literature which provides evidence for behaviors which are associated with successful weight loss maintenance. Behavioral theory also provides further insight regarding successful behavior change and maintenance. Objective We aimed to apply this knowledge to the development of the functionality of an app targeting weight loss maintenance. Methods We have subsequently undertaken the development of a persuasive and behavior targeting mobile app (MotiMate) to assist in maintenance of weight loss. MotiMate combines persuasive and behavior change theories in a practical targeted tool through its motivational messages, personalized feedback, and intelligent supportive tools to manage weight, food, exercise, mood and stress. Results The development and trial of MotiMate received funding support in May 2014. All 88 volunteers started the trial by December 2014 and were in the process of completing their final visits when this paper was submitted (May 2015). Data analysis is currently underway. Conclusions The paper has presented a scientifically informed mobile phone app to support weight loss maintenance. Further evaluation of its efficacy is in progress. Trial Registration ANZCTR 12614000474651; https://www.anzctr.org.au/Trial/Registration/TrialReview.aspx?id=366120 (Archived by WebCite at http://www.webcitation.org/6eJeQiKxi). PMID:26747725

  5. Prevalence of parasitic infection in captive wild animals in Bir Moti Bagh mini zoo (Deer Park), Patiala, Punjab

    PubMed Central

    Mir, A. Q.; Dua, K.; Singla, L. D.; Sharma, S.; Singh, M. P.

    2016-01-01

    Aim: The study was conducted to know the prevalence of gastrointestinal parasites of captive wild animals at Bir Moti Bagh Mini Zoo (Deer Park), Patiala, Punjab. Materials and Methods: A total of 31 fecal samples from eight species of captive animals including Civet cat (Viverra zibetha), Porcupine (Hystrix indica), Nilgai (Boselaphus tragocamelus), Spotted deer (Axis axis), Black buck (Antelope cervicapra), Sambar deer (Cervus unicolor), Hog deer (Axis porcinus), and Barking deer (Muntiacus muntjak) were screened using classical parasitological techniques including sedimentation and floatation technique. Results: Out of 31 fecal samples examined, 20 were positive for parasitic ova/oocysts of different species indicating an overall prevalence of 68.0%. The six different types of parasites observed in the study included strongyle (67%), Strongyloides spp. (14%), coccidia (38%), Trichuris spp. (19%), ascarid (10%), and Capillaria spp. (10%). Strongyles were the most common parasites observed (67%) followed by coccidia (38%). Mixed helminth and protozoan infection were observed in 48% of animals. No cestode or trematodes were detected during the study. Conclusion: The high prevalence of gastrointestinal parasites without overt clinical signs of disease or mortality as observed in this study is suggestive of subclinical infection. The findings will help in formulating the appropriate deworming protocol for parasitic control in these captive animals. PMID:27397973

  6. Investigating Remediation Reagents Injection and Rainfall Effect by using Self-Potential Method in a Soil and Groundwater Contamination Site located in Yung Kang, Taiwan

    NASA Astrophysics Data System (ADS)

    Chuang, Yung-Chieh; Chen, Chien-Chih; Wang, Tzu-Pin; Dong, Tien-Hsing; Chen, Yao-Tsung; Lin, Su-Tien; Ho, Ching-Jen

    2016-04-01

    In this study, we have proposed the use of time-lapse SP (self-potential) monitoring system to investigate a remediation reagents injection and rainfall effect in the soil and groundwater contamination site which was located in Yung Kang, Taiwan. We set up two mutually perpendicular survey lines to continuously record the SP data at a sampling rate of 25 Hz. One extended in N-S direction for a total length of 85 m with 17 potential electrodes and 1 common reference electrode. Another extended in E-W direction for a total length of 35 m with 7 potential electrodes and 1 common reference electrode. By averaging 1 day hourly SP median data, we calculated the time-lapse SPT (self-potential tomography) with a published code SP2DINV, and got the following results. First and foremost, from the daily SPTs, we found some artificial structures at a depth of circa 5 m. Then, by observing the positive and negative electric potential distributions in both N-S and E-W SPTs, we determined that the regional groundwater flow direction was in NE. Besides, making use of interpolation scheme, we filtered the rainfall effect out of the raw SP data. Then from the SPTs within the rainy days, we successfully demonstrated the SP response to the precipitation. And this phenomenon was interpreted as streaming potential which was caused from the enhancement of groundwater pressure. In addition, we correlated the charge density variation above 5m from SPTs with daily rainfall from August to September, to evaluate the Streaming Potential Coupling Coefficient. Last but not the least, by analyzing the SPTs variation from 13th to 18th October 2015 and from 23th to 25th November 2015, we compared the SPTs difference between two remediation reagents injection periods. And we also computed the passing time of the equal-potential lines between two fixed points, to evaluate the apparent hydraulic conductivities in this study area.

  7. Mo/Ti Diffusion Bonding for Making Thermoelectric Devices

    NASA Technical Reports Server (NTRS)

    Sakamoto, Jeffrey; Kisor, Adam; Caillat, Thierry; Lara, Liana; Ravi, Vilupanur; Firdosy, Samad; Fleuiral, Jean-Pierre

    2007-01-01

    An all-solid-state diffusion bonding process that exploits the eutectoid reaction between molybdenum and titanium has been developed for use in fabricating thermoelectric devices based on skutterudite compounds. In essence, the process is one of heating a flat piece of pure titanium in contact with a flat piece of pure molybdenum to a temperature of about 700 C while pushing the pieces together with a slight pressure [a few psi (of the order of 10 kPa)]. The process exploits the energy of mixing of these two metals to form a strong bond between them. These two metals were selected partly because the bonds formed between them are free of brittle intermetallic phases and are mechanically and chemically stable at high temperatures. The process is a solution of the problem of bonding hot-side metallic interconnections (denoted hot shoes in thermoelectric jargon) to titanium-terminated skutterudite n and p legs during the course of fabrication of a unicouple, which is the basic unit cell of a thermoelectric device (see figure). The hot-side operating temperature required for a skutterudite thermoelectric device is 700 C. This temperature precludes the use of brazing to attach the hot shoe; because brazing compounds melt at lower temperatures, the hot shoe would become detached during operation. Moreover, the decomposition temperature of one of the skutterudite compounds is 762 C; this places an upper limit on the temperature used in bonding the hot shoe. Molybdenum was selected as the interconnection metal because the eutectoid reaction between it and the titanium at the ends of the p and n legs has characteristics that are well suited for this application. In addition to being suitable for use in the present bonding process, molybdenum has high electrical and thermal conductivity and excellent thermal stability - characteristics that are desired for hot shoes of thermoelectric devices. The process takes advantage of the chemical potential energy of mixing between molybdenum and titanium. These metals have a strong affinity for each other. They are almost completely soluble in each other and remain in the solid state at temperatures above the eutectoid temperature of 695 C. As a result, bonds formed by interdiffusion of molybdenum and titanium are mechanically stable at and well above the original bonding temperature of about 700 C. Inasmuch as the bonds are made at approximately the operating temperature, thermomechanical stresses associated with differences in thermal expansion are minimized.

  8. Education, Training and Contexts: Studies and Essays.

    ERIC Educational Resources Information Center

    Lauglo, Jon

    This volume provides an overview of some of the outstanding features of the work of the Norwegian sociologist and comparative educationist, Jon Lauglo. After an introduction, "'It Ain't Necessarily So!': Theories and Observations in Jon Lauglo's World of Education and Training" (Se-Yung Lim and Klaus Schaack), essays and studies are presented in…

  9. New Visions in Asian American Studies. Diversity, Community, Power.

    ERIC Educational Resources Information Center

    Ng, Franklin, Ed.; And Others

    This collection of essays from the eighth national conference of the Association for Asian American Studies is organized into four sections: history and women's studies; social science; literature; and Hawaiian studies. The following papers are included: (1) "History and Women Studies" (Yung); (2) "From Old to New Plantations: Labor's Growing…

  10. Measuring Civic Engagement Processes and Youth Civic Empowerment in the Classroom: The CIVVICS Observation Tool

    ERIC Educational Resources Information Center

    Stolte, Laurel Cadwallader; Isenbarger, Molly; Cohen, Alison Klebanoff

    2014-01-01

    Grounded in the context of the gap in civic participation, action-based civics curricula, and how classroom interactions may affect student development, we present the CIVVICS (Civic Interactions motiVating diVerse Individuals in Classroom Settings) observation tool. CIVVICS's four domains--Lesson Planning and Implementation, Classroom…

  11. Placental endoplasmic reticulum stress and acidosis: relevant aspects in gestational diabetes.

    PubMed

    Jawerbaum, Alicia

    2016-10-01

    In this issue, Yung and colleagues (doi: 10.1007/s00125-016-4040-2 ) report endoplasmic reticulum stress in the placenta of patients with gestational diabetes mellitus. With the use of a trophoblast-like cell line, these authors identify putative mechanisms involved in, and treatments to prevent the induction of endoplasmic reticulum stress. Here, the relevance and possible implications of these findings and areas for further research are discussed. PMID:27379669

  12. A Record Book of Open Heart Surgical Cases between 1959 and 1982, Hand-Written by a Cardiac Surgeon

    PubMed Central

    Kim, Won-Gon

    2016-01-01

    A book of brief records of open heart surgery underwent between 1959 and 1982 at Seoul National University Hospital was recently found. The book was hand-written by the late professor and cardiac surgeon Yung Kyoon Lee (1921–1994). This book contains valuable information about cardiac patients and surgery at the early stages of the establishment of open heart surgery in Korea, and at Seoul National University Hospital. This report is intended to analyze the content of the book. PMID:27525246

  13. A Record Book of Open Heart Surgical Cases between 1959 and 1982, Hand-Written by a Cardiac Surgeon.

    PubMed

    Kim, Won-Gon

    2016-08-01

    A book of brief records of open heart surgery underwent between 1959 and 1982 at Seoul National University Hospital was recently found. The book was hand-written by the late professor and cardiac surgeon Yung Kyoon Lee (1921-1994). This book contains valuable information about cardiac patients and surgery at the early stages of the establishment of open heart surgery in Korea, and at Seoul National University Hospital. This report is intended to analyze the content of the book. PMID:27525246

  14. Placental endoplasmic reticulum stress and acidosis: relevant aspects in gestational diabetes.

    PubMed

    Jawerbaum, Alicia

    2016-10-01

    In this issue, Yung and colleagues (doi: 10.1007/s00125-016-4040-2 ) report endoplasmic reticulum stress in the placenta of patients with gestational diabetes mellitus. With the use of a trophoblast-like cell line, these authors identify putative mechanisms involved in, and treatments to prevent the induction of endoplasmic reticulum stress. Here, the relevance and possible implications of these findings and areas for further research are discussed.

  15. Wear Resistant Coating on Tungsten Carbide Hard Alloy

    NASA Astrophysics Data System (ADS)

    Oskolkova, T. N.

    2015-09-01

    The article reveals new knowledge about the role of zirconium in the composition of (Ti, Zr)N ion-plasma coating applied on WC10KS alloy. It is determined that when zirconium is introduced into ion-plasma coating TiN (50%) wear resistance and adhesion strength grow, nanohardness increases by 23% (up to 38500MPa), Yung's modulus rises by 67%, friction coefficient reduces to p = 0.07 and performance characteristics of a carbide alloy improve.

  16. Confining strings in supersymmetric theories with Higgs branches

    NASA Astrophysics Data System (ADS)

    Shifman, M.; Tallarita, Gianni; Yung, Alexei

    2015-03-01

    We study flux tubes (strings) on the Higgs branches in supersymmetric gauge theories. In generic vacua on the Higgs branches, strings were shown to develop long-range "tails" associated with massless fields, a characteristic feature of the Higgs branch (the only exception is the vacuum at the base of the Higgs branch). A natural infrared regularization for the above tails is provided by a finite string length L . We perform a numerical study of these strings in generic vacua. We focus on the simplest example of strings in N =1 supersymmetric QED with the Fayet-Iliopoulos term. In particular, we examine the accuracy of a logarithmic approximation (proposed earlier by Evlampiev and Yung) for the tension of such string solutions. In the Evlampiev-Yung formula, the dependence of tension on the string length is logarithmic, and the dependence on the geodesic length from the base of the Higgs branch is quadratic. We observe a remarkable agreement of our numerical results for the string tension with the Evlampiev-Yung analytic expression.

  17. [The Jung model of active style of schema].

    PubMed

    Ogłodek, Ewa; Araszkiewicz, Aleksander

    2011-12-01

    Yung was of an opinion that the borderline personality as a pathology results from the experiences of a frightened and violence-experiencing child who is left to their own devices in the hostile world. In that situation, the child, longing for safety, simultaneously experiences fear of abuse, hurt and rejection and remains distrustful. In order to understand the dramatic changes in the individual's behaviour, in case of the borderline personality disorders, Yung developed the concept, presented by Aaron Beck at the therapeutic workshops in the 1980s. Beck's concept was based upon the assumption that some pathological states expressed strong emotional states, experienced in childhood on the basis of regression. Yung presented them in the form of conceptualization in the categories of the active styles of schema. Apart from the states of regression, he also differentiated less regressive styles of schema. The style of schema should be interpreted as a pattern of experiencing, thinking and behaviour, based upon a determined set of schema, and characterized by independence from other styles.

  18. Alkali Metal Thermoelectric Conversion (AMTEC) for space nuclear power systems

    NASA Astrophysics Data System (ADS)

    Bankston, C. P.; Cole, T.; Khanna, S. K.; Thakoor, A. P.

    Performance parameters of the Alkali Metal Thermoelectric Converter (AMTEC) for a 100 kW electric power system have been calculated at four technological levels assuming a heat pipe-cooled nuclear reactor heat source. The most advanced level considered would operate between 1180 K converter temperature and 711 K radiator temperature at 16 percent efficiency, and would weigh 1850 kg with a radiator area of 43 sq m. In addition, electrode research studies for the AMTEC systems have been conducted utilizing an experimental test cell of Bankston et al. (1983) and Mo and several Mo-Ti electrodes. It was found that the Mo-Ti electrodes offered no improvement in lifetime characteristics over the pure Mo electrodes, however, oxygen treatment of a degraded Mo electrode restored its specific power output to 90 percent of its original specific power and maintained this level for 60 hr, thus offering a potential for lifetime stability.

  19. AGU membership applications

    NASA Astrophysics Data System (ADS)

    Applications for membership have been received from the following individuals. The letter after the name denotes the proposed primary section affiliation.Henry D. I. Abarbanel (O), Julia C. Allen (H), Gwendolyn L. Anson (GP), Andrew Bakun (O), C. A. Bengtson (T), Patricia A. Berge (S), Peter R. Betzer (O), Pierre Boivin (V), Michael V. Capobianco (P), Martin C. Chapman (S), Chu-Yung Chen (V), Timothy J. Clarke (S), Steven C. Constable (GP), Michele Dermer (H), G. M. Dow (T), Carl E. Draper (G), Dean A. Dunn (O), I. B. Everingham (S).

  20. Avian artificial insemination and semen preservation

    USGS Publications Warehouse

    Gee, G.F.; Risser, Arthur C.; Todd, Frank S.

    1983-01-01

    Summary: Artificial insemination is a practical propagation tool that has been successful with a variety of birds. Cooperative, massage, and electroejaculation and modifications of these three basic methods of semen collection are described for a variety of birds. Semen color and consistency and sperm number, moti!ity, and morphology, as discussed, are useful indicators of semen quality, but the most reliable test of semen quality is the production of fertile eggs. Successful cryogenic preservation of avian semen with DMSO or glycerol as the cryoprotectant has been possible. Although the methods for preservation require special equipment, use of frozen semen requires only simple insemination supplies

  1. Comparative Genomics of Cluster O Mycobacteriophages

    PubMed Central

    Cresawn, Steven G.; Pope, Welkin H.; Jacobs-Sera, Deborah; Bowman, Charles A.; Russell, Daniel A.; Dedrick, Rebekah M.; Adair, Tamarah; Anders, Kirk R.; Ball, Sarah; Bollivar, David; Breitenberger, Caroline; Burnett, Sandra H.; Butela, Kristen; Byrnes, Deanna; Carzo, Sarah; Cornely, Kathleen A.; Cross, Trevor; Daniels, Richard L.; Dunbar, David; Findley, Ann M.; Gissendanner, Chris R.; Golebiewska, Urszula P.; Hartzog, Grant A.; Hatherill, J. Robert; Hughes, Lee E.; Jalloh, Chernoh S.; De Los Santos, Carla; Ekanem, Kevin; Khambule, Sphindile L.; King, Rodney A.; King-Smith, Christina; Klyczek, Karen; Krukonis, Greg P.; Laing, Christian; Lapin, Jonathan S.; Lopez, A. Javier; Mkhwanazi, Sipho M.; Molloy, Sally D.; Moran, Deborah; Munsamy, Vanisha; Pacey, Eddie; Plymale, Ruth; Poxleitner, Marianne; Reyna, Nathan; Schildbach, Joel F.; Stukey, Joseph; Taylor, Sarah E.; Ware, Vassie C.; Wellmann, Amanda L.; Westholm, Daniel; Wodarski, Donna; Zajko, Michelle; Zikalala, Thabiso S.; Hendrix, Roger W.; Hatfull, Graham F.

    2015-01-01

    Mycobacteriophages – viruses of mycobacterial hosts – are genetically diverse but morphologically are all classified in the Caudovirales with double-stranded DNA and tails. We describe here a group of five closely related mycobacteriophages – Corndog, Catdawg, Dylan, Firecracker, and YungJamal – designated as Cluster O with long flexible tails but with unusual prolate capsids. Proteomic analysis of phage Corndog particles, Catdawg particles, and Corndog-infected cells confirms expression of half of the predicted gene products and indicates a non-canonical mechanism for translation of the Corndog tape measure protein. Bioinformatic analysis identifies 8–9 strongly predicted SigA promoters and all five Cluster O genomes contain more than 30 copies of a 17 bp repeat sequence with dyad symmetry located throughout the genomes. Comparison of the Cluster O phages provides insights into phage genome evolution including the processes of gene flux by horizontal genetic exchange. PMID:25742016

  2. Oxygen isotope fractionation in stratospheric CO2

    NASA Technical Reports Server (NTRS)

    Thiemens, M. H.; Jackson, T.; Mauersberger, K.; Schueler, B.; Morton, J.

    1991-01-01

    A new cryogenic collection system has been flown on board a balloon gondola to obtain separate samples of ozone and carbon dioxide without entrapping major atmospheric gases. Precision laboratory isotopic analysis of CO2 samples collected between 26 and 35.5 km show a mass-independent enrichment in both O-17 and O-18 of about 11 per mil above tropospheric values. Ozone enrichment in its heavy isotopes was 9 to 16 percent in O3-50 and 8 to 11 percent in O3-49, respectively (Schueler et al., 1990). A mechanism to explain the isotope enrichment in CO2 has been recently proposed by Yung et al. (1991). The model is based on the isotope exchange between CO2 and O3 via O(1D), resulting in a transfer of the ozone isotope enrichment to carbon dioxide. Predicted enrichment and measured values agree well.

  3. International Ultraviolet Explorer observations of Venus SO2 and SO

    NASA Astrophysics Data System (ADS)

    Na, C. Y.; Esposito, L. W.; Skinner, T. E.

    1990-05-01

    Results of recent International Ultraviolet Explorer observations of Venus made on January 20, 1987 and April 2 and 3, 1988 are presented along with a reanalysis of the 1979 observations (Conway et al., 1979). The observations indicate that the amount of sulfur dioxide at the cloud tops of Venus declined by a factor of 8 + or - 4 from 380 + or - 70 ppb in 1979 to 50 + or - 20 ppb in 1987 and 1988. These values are consistent with the Pioneer Venus results. Absorption features of sulfur monoxide are identified for the first time, and the SO mixing ratio above the cloud level is estimated to be 20 + or - 10 ppb for 1979. This is consistent with photochemical models by Winick and Stewart (1980) and Yung and DeMore (1982) and with the upper limit from Wilson et al. (1981).

  4. Comparative genomics of Cluster O mycobacteriophages.

    PubMed

    Cresawn, Steven G; Pope, Welkin H; Jacobs-Sera, Deborah; Bowman, Charles A; Russell, Daniel A; Dedrick, Rebekah M; Adair, Tamarah; Anders, Kirk R; Ball, Sarah; Bollivar, David; Breitenberger, Caroline; Burnett, Sandra H; Butela, Kristen; Byrnes, Deanna; Carzo, Sarah; Cornely, Kathleen A; Cross, Trevor; Daniels, Richard L; Dunbar, David; Findley, Ann M; Gissendanner, Chris R; Golebiewska, Urszula P; Hartzog, Grant A; Hatherill, J Robert; Hughes, Lee E; Jalloh, Chernoh S; De Los Santos, Carla; Ekanem, Kevin; Khambule, Sphindile L; King, Rodney A; King-Smith, Christina; Klyczek, Karen; Krukonis, Greg P; Laing, Christian; Lapin, Jonathan S; Lopez, A Javier; Mkhwanazi, Sipho M; Molloy, Sally D; Moran, Deborah; Munsamy, Vanisha; Pacey, Eddie; Plymale, Ruth; Poxleitner, Marianne; Reyna, Nathan; Schildbach, Joel F; Stukey, Joseph; Taylor, Sarah E; Ware, Vassie C; Wellmann, Amanda L; Westholm, Daniel; Wodarski, Donna; Zajko, Michelle; Zikalala, Thabiso S; Hendrix, Roger W; Hatfull, Graham F

    2015-01-01

    Mycobacteriophages--viruses of mycobacterial hosts--are genetically diverse but morphologically are all classified in the Caudovirales with double-stranded DNA and tails. We describe here a group of five closely related mycobacteriophages--Corndog, Catdawg, Dylan, Firecracker, and YungJamal--designated as Cluster O with long flexible tails but with unusual prolate capsids. Proteomic analysis of phage Corndog particles, Catdawg particles, and Corndog-infected cells confirms expression of half of the predicted gene products and indicates a non-canonical mechanism for translation of the Corndog tape measure protein. Bioinformatic analysis identifies 8-9 strongly predicted SigA promoters and all five Cluster O genomes contain more than 30 copies of a 17 bp repeat sequence with dyad symmetry located throughout the genomes. Comparison of the Cluster O phages provides insights into phage genome evolution including the processes of gene flux by horizontal genetic exchange. PMID:25742016

  5. Recovery of Weak Factor Loadings When Adding the Mean Structure in Confirmatory Factor Analysis: A Simulation Study

    PubMed Central

    Ximénez, Carmen

    2016-01-01

    This article extends previous research on the recovery of weak factor loadings in confirmatory factor analysis (CFA) by exploring the effects of adding the mean structure. This issue has not been examined in previous research. This study is based on the framework of Yung and Bentler (1999) and aims to examine the conditions that affect the recovery of weak factor loadings when the model includes the mean structure, compared to analyzing the covariance structure alone. A simulation study was conducted in which several constraints were defined for one-, two-, and three-factor models. Results show that adding the mean structure improves the recovery of weak factor loadings and reduces the asymptotic variances for the factor loadings, particularly for the models with a smaller number of factors and a small sample size. Therefore, under certain circumstances, modeling the means should be seriously considered for covariance models containing weak factor loadings. PMID:26779071

  6. Mapping water in Jupiter with Herschel/HIFI

    NASA Astrophysics Data System (ADS)

    Cavalié, Thibault; Hartogh, P.; Lellouch, E.; Moreno, R.; Jarchow, C.; Billebaud, F.; Orton, G.; Rengel, M.; Sagawa, H.; Lara, L.; Gonzalez, A.; HssO Team

    2010-10-01

    A major discovery of ISO was the detection of water in the upper atmospheres of the four giant planets and Titan (Feuchtgruber et al, 1997; Coustenis et al, 1998), implying the existence of external sources of water. This oxygen supply, which manifests itself also through the presence of CO2 and CO in these atmospheres, may have several sources: (i) a permanent flux from interplanetary dust particles produced from asteroid collisions and from comet activity (Prather et al,1978), (ii) local sources from planetary environments (rings, satellites) (Strobel and Yung, 1979; Prangé et al, 2006), (iii) cometary ``Shoemaker-Levy 9 (SL9) type'’ impacts (Lellouch et al, 1995). Disentangling the various sources at Jupiter is a key objective of the Herschel Space Observatory key program HssO (Hartogh et al, 2009). Herschel/HIFI observed H2O in Jupiter at 1669 GHz in a 5x5 point map on July 7, 2010. From this observation, we will present and discuss the search for latitudinal variability of H2O in Jupiter. Acknowledgement: Research by T. Cavalié was supported by the Fondation des Amis des Sciences. References: Coustenis et al, A&A 336,L85-L89. Feuchtgruber et al, 1997. Nature 389, 159-162. Hartogh et al, 2009. Planet. Space Sci. 57, 1596-1606. Lellouch et al, 1995. Nature 373, 592-595. Prangé et al, 2006. Icarus 180, 379-392. Prather, 1978. ApJ 223, 1072-1081. Strobel & Yung, 1979. Icarus 37, 256-263.

  7. Heavy hydrogen isotopes penetration through austenitic and martensitic steels

    NASA Astrophysics Data System (ADS)

    Dolinski, Yu.; Lyasota, I.; Shestakov, A.; Repritsev, Yu.; Zouev, Yu.

    2000-12-01

    Experimental results are presented of deuterium and tritium permeability through samples of nickel, austenitic steel (16Cr-15Ni-3Mo-Ti), and martensitic steel DIN 1.4914 (MANET) exposed to a gaseous phase. Experiments were carried out at the RFNC-VNHTF installation, which has the capability of measuring the permeability of hydrogen isotopes by mass spectrometry over a temperature range of 293-1000 K, hydrogen isotope pressure ranges of 50-1000 Pa. Sample disks (30 and 40 mm diam.) can be assembled in the test chamber by electron-beam welding or mounted (30-mm diam. disks) on gaskets. Diffusion and permeability dependencies on temperature and pressure are determined and corresponding activation energies are presented.

  8. [Polyetheretherketone (PEEK). Part II: application in clinical practice].

    PubMed

    Pokorný, D; Fulín, P; Slouf, M; Jahoda, D; Landor, I; Sosna, A

    2010-01-01

    Polyetheretherketone (PEEK) is one of the up-to-date organic polymer thermoplastics with applications in orthopaedics and trauma medicine. This study presents a detailed analysis of its tests and applications in clinical medicine. A wide range of PEEK modifications and composites are commercially available, e.g., PEEK-Classix, PEEK-Optima, Endolign and Motis. They differ in their physical properties, which makes them suitable for different applications. Other forms, so-called PEEK bioactive composites, contain beta-tricalcium phosphate and hydroxyapatite. Research in this field is also concerned with the surface finish of this polymer thermoplastic and involves macroporous titanium and hydroxyapatite layers, or treatment with laser for an exactly defined surface structure. The clinical applications of PEEK and its composites include, in addition to components for spinal surgery, osteosynthesis plates, screws, intramedullary nails or external fixators, which are implants still at the stage of prototypes. In this review, attention is paid to the use of PEEK thermoplastics for joint replacement. Mid-term studies involving hundreds of patients have shown that, for instance, the VerSys Epoch Fullcoat Hip System (Zimmer) has a markedly lower stress-shielding effect. Carbon fibre-reinforced (CFR-PEEK) composites are used to make articulating components for total hip replacement. Their convenient properties allow for production of much thinner liners and an enlargement of the femoral head diameter, thus reducing the wear of joint implants. CFR-PEEK composites are particularly effective for hip resurfacing in which the Mitch PCR (Stryker) acetabular component has been used with good results. The MOTIS polymer acetabular cup (Invibio Ltd.) is another example. Further PEEK applications include the construction of finger-joint prostheses (Mathys AG), suture anchors (Stryker) and various kinds of augmentations (Medin). Based on the information obtained, the authors suggest

  9. Photochemical Modeling of the Venus Middle Atmosphere

    NASA Astrophysics Data System (ADS)

    Mills, F. P.; Allen, M. A.; Yung, Y. L.; Lin, A.

    1997-07-01

    The primary photochemical cycle of the Venus middle atmosphere is the photolysis of CO_2 to form CO and oxygen atoms on the dayside, and the re-formation of CO_2 from CO and oxygen via catalytic cycles. Previous modeling used ClO_x [Krasnopolsky & Parshev 1983, Yung & DeMore 1982], SO_x [Winick & Stewart 1980], and HO_x [Sze & McElroy 1975] radicals to catalyze the re-formation of CO_2. These models qualitatively explained the stability of Venus' CO_2 atmosphere, but, despite the powerful catalytic cycles introduced, none could quantitatively explain either the low column abundance of molecular oxygen (two-sigma upper limit of ~ 0.3 - 1.0 x 10(18) molecules cm(-2) depending on the assumed altitude for optical depth unity, Trauger & Lunine 1983) or the intense nightside airglow in the O_2 ((1) Delta ) band. We have developed a revised one-dimensional, steady-state model based on the latest kinetic and photoabsorption data and observations of the abundances of HCl, SO_2, SO, and H_2O. The vertical eddy diffusion profile and the abundance of SO_2 at the lower boundary (58-km altitude) were adjusted to simultaneously reproduce (within the stated error bars and temporal/spatial variability) the retrieved SO profile [Na et al. 1994], the retrieved SO_2 abundance and scale height at the cloud tops [Na et al. 1994], and the retrieved CO profile [Clancy & Muhleman 1991]. Using only gas-phase chemistry, the predicted column abundance of molecular oxygen (above 58-km altitude) has been reduced to ~ 3 x 10(18) molecules cm(-2) by adjusting the rates for selected reactions within their one-sigma uncertainties. Although still larger than the observed upper limit, this column abundance is a factor of 10 smaller than would have been predicted using the Yung & DeMore 1982 model with the currently accepted abundance for HCl (0.4 ppm, Connes et al. 1967, Pollack et al. 1993). Our preliminary results affirm the importance of the ClO_x catalytic cycles in the chemistry of the Venus

  10. Technical Knowledge, Cultural Practices and Social Boundaries: Wan-Nan Scholars and the Recasting of Jesuit Astronomy, 1600-1800

    NASA Astrophysics Data System (ADS)

    Chu, Ping-Yi.

    Taking four Wan-nan Confucian scholars--Yang Kuang -hsien, Mei Wen-ting, Chiang Yung and Tai Chen--as examples, this dissertation studies how an immigrant Jesuit scientific community built and defended itself in a specialized institutional niche located at the Ch'ing court and how a defeated Chinese scientific tradition successfully survived by occupying a broader cultural space, with the Manchu emperor in between. Special attention is paid to how these four Confucian scholars constructed social boundaries between the Chinese and the Westerners in their astronomical discourses and how they domesticated Western astronomy in order to fit the Chinese cultural conditions situated in the power structure built by the Manchus. This inquiry begins with a brief introduction of Wan-nan and the Wan-nan school. I then discuss how the Jesuits legitimated their knowledge during the Ming -Ch'ing transition, and how Jesuit astronomy was situated within the power nexus between the Confucian literati and the emperors. The next chapter focuses on Yang Kuang-hsien and his challenges to the Jesuits. I examine his strategies and the power structure in which Yang carried out his challenge to the Jesuits. The fourth and fifth chapters investigate how Mei Wen-ting restructured the relationship between Confucianism and astronomy. The former chapter focuses on Mei's social networking and his ambivalence towards the Ming and Ch'ing dynasties, on the one hand, and towards Chinese and Western learning on the other. The latter chapter deals with how Mei Wen-ting recast Chinese astronomical tradition and Confucianism. In the sixth chapter, I will compare the fame of Chiang Yung and Tai Chen in order to demonstrate how astronomy was practiced in evidential studies after Mei Wen-ting, and how evidential studies itself conveyed an ideological construction of the other. Through integrating Western astronomy with indigenous tradition while exorcising the otherness contained within the cultural package

  11. Mars atmospheric D/H - Consistent with polar volatile theory?

    NASA Technical Reports Server (NTRS)

    Jakosky, Bruce M.

    1990-01-01

    Current theories on the Martian water history are discussed on the basis of data for the D/H ratio in the Martian atmosphere (which was found to be enhanced by a factor of 6 + or - relative to the value on earth). In particular, the calculations of Yung et al. (1988), on the basis of their photochemical model, are found to be inconsistent with current theories for the evolution of the polar deposits on Mars. While the photochemical model predicts that about 95 percent of the Martian water has escaped over geologic time and the nonatmospheric reservoir is now only 02 m thick, the polar volatile theory suggest that polar deposits contain the equivalent of tens of meters of water, requiring a more rapid escape of H and D to space than predicted by the photochemical model to match the observed D/H ratio. The paper examines the behavior of the polar caps and the atmospheric water vapor over geologic time and the loss of H and D to space. It is concluded that, at present, it is premature to accept a specific history for water on Mars.

  12. Study of Tropospheric Ozone and UV Reflectivity Using TOMS Data

    NASA Technical Reports Server (NTRS)

    Yung, Yuk L.

    2002-01-01

    Perhaps the single most important result from the study of Chuang and Yung is that the interannual variability of the Earth's albedo (especially in Spring) on land is dominated by snow/ice, and not by clouds. This interannual variability could be the major driver of changes in the atmosphere and the biosphere. It is plausible that the interannual variability of snow/ice, through interactions with the atmosphere and biosphere, is responsible for the interannual variability of atmospheric CO2. By carefully studying the albedo variations off the Peru coast, we found evidence for indirect aerosol effect on clouds. Based on a detailed analysis of the cloud data obtained by the International Satellite Cloud Climatology Project (SCCP) in the years 1983-1991, we show that besides the reported 3 % variation in global cloudiness, the global mean cloud optical thickness (MCOT) also has significant variation which is out of phase with that of the global cloudiness. The combined effect of the two opposing variations may be a null effect on the cloud reflectivity. These results are consistent with the Total Ozone Mapping Spectrometer (TOMS) reflectively measurements. The MCOT variation is further shown to be correlated with both the solar cycle and the ENSO (El Nino Southern Oscillation) cycle. Our present analysis cannot distinguish which of the above two provides better correlation, although independent data from the High resolution Infrared Radiation Sounder (HIRS) from 1990 to 1996 favor the solar cycle. Future data are needed to identify the true cause of these changes.

  13. The bioethical principles and Confucius' moral philosophy.

    PubMed

    Tsai, D F-C

    2005-03-01

    This paper examines whether the modern bioethical principles of respect for autonomy, beneficence, non-maleficence, and justice proposed by Beauchamp and Childress are existent in, compatible with, or acceptable to the leading Chinese moral philosophy-the ethics of Confucius. The author concludes that the moral values which the four prima facie principles uphold are expressly identifiable in Confucius' teachings. However, Confucius' emphasis on the filial piety, family values, the "love of gradation", altruism of people, and the "role specified relation oriented ethics" will inevitably influence the "specification" and application of these bioethical principles and hence tend to grant "beneficence" a favourable position that diminishes the respect for individual rights and autonomy. In contrast, the centrality of respect for autonomy and its stance of "first among equals" are more and more stressed in Western liberal viewpoints. Nevertheless, if the Confucian "doctrine of Mean" (chung-yung) and a balanced "two dimensional personhood" approach are properly employed, this will require both theorists and clinicians, who are facing medical ethical dilemmas, of searching to attain due mean out of competing moral principles thus preventing "giving beneficence a priority" or "asserting autonomy must triumph".

  14. Summer fluxes of atmospheric greenhouse gases N2O, CH4 and CO2 from mangrove soil in South China.

    PubMed

    Chen, G C; Tam, N F Y; Ye, Y

    2010-06-01

    The atmospheric fluxes of N(2)O, CH(4) and CO(2) from the soil in four mangrove swamps in Shenzhen and Hong Kong, South China were investigated in the summer of 2008. The fluxes ranged from 0.14 to 23.83 micromol m(-2)h(-1), 11.9 to 5168.6 micromol m(-2)h(-1) and 0.69 to 20.56 mmol m(-2)h(-1) for N(2)O, CH(4) and CO(2), respectively. Futian mangrove swamp in Shenzhen had the highest greenhouse gas fluxes, followed by Mai Po mangrove in Hong Kong. Sha Kong Tsuen and Yung Shue O mangroves in Hong Kong had similar, low fluxes. The differences in both N(2)O and CH(4) fluxes among different tidal positions, the landward, seaward and bare mudflat, in each swamp were insignificant. The N(2)O and CO(2) fluxes were positively correlated with the soil organic carbon, total nitrogen, total phosphate, total iron and NH(4)(+)-N contents, as well as the soil porosity. However, only soil NH(4)(+)-N concentration had significant effects on CH(4) fluxes.

  15. NOx in the atmospheres of aquaplanets as electron acceptors for life

    NASA Astrophysics Data System (ADS)

    Wong, M. L.; Yung, Y. L.; Russell, M. J.

    2014-12-01

    A high potential electron acceptor is required to drive the highly endergonic reactions at the entry points to the autotrophic metabolic pathways that would lead to life on any wet rocky world. Nitrate and nitrite in the earliest oceans are the most attractive candidates (Ducluzeau et al., 2009, 2014). It has been estimated that, given a CO2 and N2 atmosphere, lightning (a proportion of it volcanic), meteorite impacts and volcanic gases would have produced enough NOx in a million years or so (>1018 g) to generate micromolar amounts of NO3- and NO2- in the ocean (Yung and McElroy, 1979; Kasting, 1990; Navarro-González et al., 1998; Martin et al., 2007). It is notable that lightning has been detected on Venus and Mars along with evidence of atmospheric NO. Because a figure 1018 g of nitrate/nitrite is controversial, we will present new calculations based on 10 atmospheres of CO2, two atmospheres of N2 and stepped concentrations of water vapor dependent on surface temperatures.

  16. A first application of marine-controlled source method on gas-hydrate study off SW Taiwan

    NASA Astrophysics Data System (ADS)

    Chiang, C.; Hsu, S.; Chen, C.; Evans, R. L.

    2011-12-01

    Bottom simulating reflector (BSR), high methane flux, shallow sulfide/methane interface, fluid gushed from the seafloor, self-carbonate within sediment, methane reef, and self-biome are widely distributed in the offshore of the southwestern Taiwan. These geophysical and geochemistry signatures imply a high gas hydrate reservoir area. However, the upper bound of the gas hydrate and shallow section of the sediment are still unclear. This study shows the results of our first marine controlled-source electromagnetic survey in 2010 and provides the information of shallow sediment around the offshore of southwestern Taiwan. Three target areas were conducted: the southeast of Small Ryukyu Islands (seepage, G96), west of Yung-An Ridge (YAR) and northwest of Good Weather Ridge (GWR). In total, fourteen survey lines have been carried out, and the total survey length is about 72 km. Our preliminary result shows that the resistivity/porosity anomalies within pockmarks and seepages correspond to the features from the sub-bottom profilers. The range of porosity change is 4 % in G96 and YAR sites, while in the GWR site there is up to 8 % of porosity change and implies a high gas hydrate potential area.

  17. Schrödinger

    NASA Astrophysics Data System (ADS)

    Kilmister, C. W.

    1989-03-01

    1. Introduction C. W. Kilmister; 2. Boltzmann's influence on Schrödinger Dieter Flamm; 3. Schrödinger's original interpretation of the Schrödinger equation: a rescue attempt Jon Dorling; 4. Are there quantum jumps? J. S. Bell; 5. Square root of minus one, complex phases and Erwin Schrödinger Chen Ning Yung; 6. Consequences of the Schrödinger equation for atomic and molecular physics W. E. Thirring; 7. Molecular dynamics: from H + H, to biomolecules Martin Karplus; 8. Orbital presentation of chemical reactions Kenichi Fukui; 9. Quantum chemistry A. D. Buckingham; 10. Eamon de Valera, Erwin Schrödinger and the Dublin Institute Sir William McCrea; 11. Do bosons condense? J. T. Lewis; 12. Schrödinger's nonlinear optics James McConnell; 13. Schrödinger's unified field theory seen 40 years later O. Hittmair; 14. The Schrödinger equation of the Universe S. W. Hawking; 15. Overview of particle physics A. Salam; 16. Gauge fields, topological defects and cosmology T. W. B. Kibble; 17. Quantum theory and astronomy M. J. Seaton; 18. Schrödinger's contributions to chemistry and biology Linus Pawling; 19. Erwin Schrödinger's What is Life? and molecular biology M. F. Perutz.

  18. Isotopic fractionation of hydrogen in planetary exospheres due to ionosphere-exosphere coupling - Implications for Venus

    NASA Technical Reports Server (NTRS)

    Hodges, R. R., Jr.

    1993-01-01

    The paper considers isotopic hydrogen fractionation processes in the Venusian exosphere due to ionosphere-exosphere coupling by addressing two deficiencies in the present theory of differential escape. First, a set of D/H isotopic fractionation curves is derived for the ion-neutral interactions of charge and collisional momentum transfer, and these are compared with the results of Gurwell and Yung (1993) for hot O collisional ejection. Then, the question of the relative importance of collisional ejection in atmospheric escape is reexamined using two simple exosphere models. It is shown that O-O collisions suppress the high energy component of the hot O distribution by more than a factor of 10. Moreover, the ballistic trajectories of fast O atoms that reach the nighttime reservoir of exospheric hydrogen favor downward scatter of D and H rather than their escape. It is concluded that, due to severe limits placed on the effectiveness of collisional ejection, the differential escape of D and H from Venus is determined by charge exchange interactions rather than the collisional ejection.

  19. International Ultraviolet Explorer observations of Venus SO sub 2 and SO

    SciTech Connect

    Na, Chan Y.; Esposito, L.W.; Skinner, T.E. )

    1990-05-20

    Results of recent International Ultraviolet Explorer (IUE) observations of Venus made on January 20, 1987, and April 2 and 3, 1988, along with a reanalysis of the 1979 observations (Conway et al., 1979) are presented. The observations indicate that the amount of sulfur dioxide at the cloud tops of Venus declined by a factor of 8 {plus minus} 4 from 3809 {plus minus} 70 ppb in 1987 and 1988. These values are consistent with the Pioneer Venus results (L.W. Esposito, A recalibration of the solar flux for Pioneer Venus results and a comparison of existing SO{sub 2} measurements on Venus, unpublished manuscript, 1989). The authors identify absorption features of sulfur monoxide for the first time, and estimate the SO mixing ratio above the cloud level is 20 {plus minus} 10 ppb for 1979. This is consistent with photochemical models by Winick and Stewart (1980) and Yung and DeMore (1982) and with the upper limit from Wilson et al. (1981).

  20. Exploring Chemical Equilibrium in Hot Jovians

    NASA Astrophysics Data System (ADS)

    Blumenthal, Sarah; Harrington, Joseph; Mandell, Avi; Hébrard, Eric; Venot, Olivia; Cubillos, Patricio; Blecic, Jasmina; Challener, Ryan

    2016-01-01

    It has been established that equilibrium chemistry is usually achieved deep in the atmosphere of hot Jovians where timescales are short (Line and Yung 2013). Thus, equilibrium chemistry has been used as a starting point (setting initial conditions) for evaluating disequilibrium processes. We explore parameters of setting these initial conditions including departures from solar metallicity, the number of species allowed in a system, the types of species allowed in a system, and different thermodynamic libraries in an attempt to create a standard for evaluating equilibrium chemistry. NASA's open source code Chemical Equilibrium and Applications (CEA) is used to calculate model planet abundances by varying the metallicity, in the pressure regime 0.1 to 1 bar. These results are compared to a variety of exoplanets(Teq between 600 and 2100K) qualitatively by color maps of the dayside with different temperature redistributions. Additionally, CEA (with an up-dated thermodynamic library) is compared with the thermochemical model presented in Venotet al. (2012) for HD 209458b and HD 189733b. This same analysis is then applied to the cooler planet HD 97658b. Spectra are generated and we compare both models' outputs using the open source codetransit (https://github.com/exosports/transit) using the opacities of 15 molecules. We make the updated CEA thermodyanamic library and supporting Python scripts to do the CEA analyses available open source. Thiswork was supported by NASA Planetary Atmospheres grant NNX12AI69G.

  1. Helical Majorana fermions in d+id'-wave topological superconductivity of doped correlated quantum spin Hall insulators

    NASA Astrophysics Data System (ADS)

    Chung, Chung-Hou; Sun, Shih-Jye; Chang, Yung-Yeh; Tsai, Wei-Feng; Zhang, Fuchun

    Large Hubbard U limit of the Kane-Mele model on a zigzag ribbon of honeycomb lattice near half-filling is studied via a renormalized mean-field theory. The ground state exhibits time-reversal symmetry (TRS) breaking dx2 -y2 + idxy -wave superconductivity. At large spin-orbit coupling, the Z2 topological phase with non-trivial spin Chern number in the pure Kane-Mele model is persistent into the TRS broken state (called ``spin-Chern phase''), and has two pairs of counter-propagating helical Majorana modes at the edges. As the spin-orbit coupling is reduced, the system undergoes a topological quantum phase transition from the spin-Chern to chiral superconducting states. Possible relevance of our results to adatom-doped graphene and irridate compounds is discussed.Ref.:Shih-Jye Sun, Chung-Hou Chung, Yung-Yeh Chang, Wei-Feng Tsai, and Fu-Chun Zhang, arXiv:1506.02584. CHC acknowledges support from NSC Grant No. 98-2918-I-009-06, No. 98-2112-M-009-010-MY3, the NCTU-CTS, the MOE-ATU program, the NCTS of Taiwan, R.O.C.

  2. Aging behavior and mechanical properties of maraging steels in the presence of submicrocrystalline Laves phase particles

    SciTech Connect

    Mahmoudi, A.; Ghavidel, M.R. Zamanzad; Nedjad, S. Hossein; Heidarzadeh, A.; Ahmadabadi, M. Nili

    2011-10-15

    Cold rolling and annealing of homogenized Fe-Ni-Mn-Mo-Ti-Cr maraging steels resulted in the formation of submicrocrystalline Fe{sub 2}(Mo,Ti) Laves phase particles. Optical and scanning electron microscopy, X-ray diffraction, tensile and hardness tests were used to study the microstructure, aging behavior and mechanical properties of the annealed steels. The annealed microstructures showed age hardenability during subsequent isothermal aging at 753 K. Ultrahigh fracture stress but poor tensile ductility was obtained after substantial age hardening in the specimens with 2% and 4% chromium. Increasing chromium addition up to 6% toughened the aged microstructure at the expense of the fracture stress by increasing the volume fraction of retained austenite. The Laves phase particles acted as crack nucleation sites during tensile deformation. - Highlights: {yields} Laves phases dispersed in a BCC iron matrix by annealing of cold rolled samples. {yields} The samples showed age hardenability during subsequent isothermal aging at 753 K. {yields} Ultrahigh fracture stress but poor ductility was obtained after age hardening. {yields} Increasing chromium addition toughened the aged microstructure. {yields} Laves phase particles acting as crack nucleation sites during tensile deformation.

  3. "Tinni" Rice ( Oryza rufipogon Griff.) Production: An Integrated Sociocultural Agroecosystem in Eastern Uttar Pradesh of India

    NASA Astrophysics Data System (ADS)

    Singh, Ranjay K.; Turner, Nancy J.; Pandey, C. B.

    2012-01-01

    This study reports how Traditional Ecological Knowledge (TEK) and informal cultural institutions have conserved key varieties of the wildgrowing rice, ` tinni' (red rice, or brownbeard rice, Oriza rufipogon Griff.), within the Bhar community of eastern Uttar Pradesh, India. The study was conducted, using conventional and participatory methods, in 10 purposively selected Bhar villages. Two distinct varieties of tinni (` tinni patali' and ` tinni moti') with differing habitats and phenotypic characters were identified. Seven microecosystems (Kari, Badaila, Chammo, Karmol, Bhainsiki, Bhainsala and Khodailia) were found to support these varieties in differing proportions. Tinni rice can withstand more extreme weather conditions (the highest as well as lowest temperatures and rainfall regimes) than the `genetically improved' varieties of rice ( Oriza sativa L.) grown in the region. Both tinni varieties are important bioresources for the Bhar's subsistence livelihoods, and they use distinctive conservation approaches in their maintenance. Bhar women are the main custodians of tinni rice agrobiodiversity, conserving tinni through an institution called Sajha. Democratic decision-making at meetings organized by village elders determines the market price of the tinni varieties. Overall, the indigenous institutions and women's participation seem to have provided safeguards from excessive exploitation of tinni rice varieties. The maintenance of tinni through cultural knowledge and institutions serves as an example of the importance of locally maintained crop varieties in contributing to people's resilience and food security in times of rapid social and environmental change.

  4. "Tinni" rice (Oryza rufipogon Griff.) production: an integrated sociocultural agroecosystem in eastern Uttar Pradesh of India.

    PubMed

    Singh, Ranjay K; Turner, Nancy J; Pandey, C B

    2012-01-01

    This study reports how Traditional Ecological Knowledge (TEK) and informal cultural institutions have conserved key varieties of the wildgrowing rice, 'tinni' (red rice, or brownbeard rice, Oriza rufipogon Griff.), within the Bhar community of eastern Uttar Pradesh, India. The study was conducted, using conventional and participatory methods, in 10 purposively selected Bhar villages. Two distinct varieties of tinni ('tinni patali' and 'tinni moti') with differing habitats and phenotypic characters were identified. Seven microecosystems (Kari, Badaila, Chammo, Karmol, Bhainsiki, Bhainsala and Khodailia) were found to support these varieties in differing proportions. Tinni rice can withstand more extreme weather conditions (the highest as well as lowest temperatures and rainfall regimes) than the 'genetically improved' varieties of rice (Oriza sativa L.) grown in the region. Both tinni varieties are important bioresources for the Bhar's subsistence livelihoods, and they use distinctive conservation approaches in their maintenance. Bhar women are the main custodians of tinni rice agrobiodiversity, conserving tinni through an institution called Sajha. Democratic decision-making at meetings organized by village elders determines the market price of the tinni varieties. Overall, the indigenous institutions and women's participation seem to have provided safeguards from excessive exploitation of tinni rice varieties. The maintenance of tinni through cultural knowledge and institutions serves as an example of the importance of locally maintained crop varieties in contributing to people's resilience and food security in times of rapid social and environmental change.

  5. Microstructural Characterization of U-Nb-Zr, U-Mo-Nb, and U-Mo-Ti Alloys via Electron Microscopy

    SciTech Connect

    A. Ewh; D. D. Keiser, Jr.; Y. H. Sohn

    2010-06-01

    Ternary uranium molybdenum alloys are currently being investigated for use as dispersion and monolithic nuclear fuels in research reactors. In this study, two such ternary alloys, with compositions U-8Mo-3Nb and U-7Mo-3Ti in wt.%, were examined using scanning electron microscopy (SEM), X-ray diffraction (XRD), and transmission electron microscopy (TEM) with high angle annular dark field (HAADF) imaging via scanning transmission electron microscopy (STEM) to identify phase constituents. These alloys were homogenized at 950°C for 96 hours and were expected to be single-phase bcc-!-U. However, upon examination, it was determined that despite homogenization, each of the alloys contained a small volume fraction precipitate phase. Through SEM and XRD, it was confirmed that the matrix retained the bcc-!-U phase, but the precipitate phases could not be identified using these methods. TEM specimens were prepared using site-specific focused ion beam (FIB) in situ lift out (INLO) technique to include at least one precipitate from each alloy. By electron diffraction, the precipitate phases for the U- 8Mo-3Nb and U-7Mo-3Ti alloys were identified as bcc-(Mo,Nb) solid solution and bcc- (Mo,Ti) solid solution, respectively.

  6. SCC of austenitic stainless steel, Ni-21Cr-13.5Mo alloy, and 0.3Mo-0.8Ni-Ti in 350 C synthetic, NO{sub 2}2-NO{sub 3}-OH tank waste

    SciTech Connect

    Pednekar, S.P.

    1998-12-31

    A necessary step in preparation of high-level radioactive tank waste for sate disposal is removal of non radioactive organic and inorganic components from washed waste. The oxidizing and alkaline nature of most wastes allows the removal of the organic components as water vapor, carbon dioxide, and ammonia gas merely by heating the wastes to no more than 350 C. Type 3 16L stainless steel (UNS S3 1603) a 21Cr-13.5Mo-Ni alloy (UNS N06022), and 0.8Ni-0.3Mo-Ti alloy (UNS R53400) were candidate materials for reactors in which the oxidation could be performed. Slow-strain-rate tests were performed on these three materials at a strain rate of 10{sup {minus}6}sec{sup {minus}1} in a diluted waste type solution containing 4.1% NO{sub 2}, 3.7% NO{sub 3}, 1% OH, and 0.22% TIC. All three materials showed intergranular stress corrosion cracking with substantial losses in ductility and strength.

  7. Comparison of a Simple Patched Conic Trajectory Code to Commercially Available Software

    NASA Technical Reports Server (NTRS)

    AndersonPark, Brooke M.; Wright, Henry S.

    2007-01-01

    Often in spaceflight proposal development, mission designers must eva luate numerous trajectories as different design factors are investiga ted. Although there are numerous commercial software packages availab le to help develop and analyze trajectories, most take a significant amount of time to develop the trajectory itself, which isn't effectiv e when working on proposals. Thus a new code, PatCon, which is both q uick and easy to use, was developed to aid mission designers to condu ct trade studies on launch and arrival times for any given target pla net. The code is able to run quick analyses, due to the incorporation of the patched conic approximation, to determine the trajectory. PatCon provides a simple but accurate approximation of the four body moti on problem that would be needed to solve any planetary trajectory. P atCon has been compared to a patched conic test case for verification, with limited validation or comparison with other COTS software. This paper describes the patched conic technique and its implementation i n PatCon. A description of the results and comparison of PatCon to ot her more evolved codes such as AGI#s Satellite Tool Kit and JAQAR As trodynamics# Swingby Calculator is provided. The results will include percent differences in values such as C3 numbers, and Vinfinity at a rrival, and other more subjective results such as the time it takes to build the simulation, and actual calculation time.

  8. The FlgT Protein Is Involved in Aeromonas hydrophila Polar Flagella Stability and Not Affects Anchorage of Lateral Flagella

    PubMed Central

    Merino, Susana; Tomás, Juan M.

    2016-01-01

    Aeromonas hydrophila sodium-driven polar flagellum has a complex stator-motor. Consist of two sets of redundant and non-exchangeable proteins (PomA/PomB and PomA2/PomB2), which are homologs to other sodium-conducting polar flagellum stator motors; and also two essential proteins (MotX and MotY), that they interact with one of those two redundant pairs of proteins and form the T-ring. In this work, we described an essential protein for polar flagellum stability and rotation which is orthologs to Vibrio spp. FlgT and it is encoded outside of the A. hydrophila polar flagellum regions. The flgT was present in all mesophilic Aeromonas strains tested and also in the non-motile Aeromonas salmonicida. The A. hydrophila ΔflgT mutant is able to assemble the polar flagellum but is more unstable and released into the culture supernatant from the cell upon completion assembly. Presence of FlgT in purified polar hook-basal bodies (HBB) of wild-type strain was confirmed by Western blotting and electron microscopy observations showed an outer ring of the T-ring (H-ring) which is not present in the ΔflgT mutant. Anchoring and motility of proton-driven lateral flagella was not affected in the ΔflgT mutant and specific antibodies did not detect FlgT in purified lateral HBB of wild type strain. PMID:27507965

  9. Cytotoxicity of Metal and Ceramic Particles in Different Sizes

    NASA Astrophysics Data System (ADS)

    Yoshida, Kazuhiro; Morita, Masafumi; Mishina, Hiroshi

    The wear debris caused by joint prosthesis is well known to induce an inflammation in the peripheral tissue. The authors carried out two kinds of experiments, to clarify the phagocytable size of wear particles and the cytotoxicity of macrophage related to the size and materials. The test materials were Al2O3, SiO2, TiO2 fine particles and Ti-6Al-4V, Co-28Cr-6Mo wear particles. The results showed that the phagocytable particle size was less than 11.9±11.2µm. It appears that the cytotoxicity did not depend on the particle size, even if the particles were phagocytable size. In the relationship between material type and inflammation, damage levels were found to be different between SiO2 and TiO2 particles, even if neither material released metal ions. The cells were damaged more severely by SiO2 particles than by Co-28Cr-6Mo for which the eluted ion could not be ignored (damage levels; SiO2>Co-28Cr-6Mo>Ti-6Al-4V>Al2O3≧TiO2). For these reasons, it was confirmed that there was a factor in addition to the toxicity of the eluted metal ion (i. e., the implant material's corrosion resistance ability), which influenced the inflammation.

  10. NASA Tech Briefs, July 2007

    NASA Technical Reports Server (NTRS)

    2007-01-01

    Topics covered include: Miniature Intelligent Sensor Module; "Smart" Sensor Module; Portable Apparatus for Electrochemical Sensing of Ethylene; Increasing Linear Dynamic Range of a CMOS Image Sensor; Flight Qualified Micro Sun Sensor; Norbornene-Based Polymer Electrolytes for Lithium Cells; Making Single-Source Precursors of Ternary Semiconductors; Water-Free Proton-Conducting Membranes for Fuel Cells; Mo/Ti Diffusion Bonding for Making Thermoelectric Devices; Photodetectors on Coronagraph Mask for Pointing Control; High-Energy-Density, Low-Temperature Li/CFx Primary Cells; G4-FETs as Universal and Programmable Logic Gates; Fabrication of Buried Nanochannels From Nanowire Patterns; Diamond Smoothing Tools; Infrared Imaging System for Studying Brain Function; Rarefying Spectra of Whispering-Gallery-Mode Resonators; Large-Area Permanent-Magnet ECR Plasma Source; Slot-Antenna/Permanent-Magnet Device for Generating Plasma; Fiber-Optic Strain Gauge With High Resolution And Update Rate; Broadband Achromatic Telecentric Lens; Temperature-Corrected Model of Turbulence in Hot Jet Flows; Enhanced Elliptic Grid Generation; Automated Knowledge Discovery From Simulators; Electro-Optical Modulator Bias Control Using Bipolar Pulses; Generative Representations for Automated Design of Robots; Mars-Approach Navigation Using In Situ Orbiters; Efficient Optimization of Low-Thrust Spacecraft Trajectories; Cylindrical Asymmetrical Capacitors for Use in Outer Space; Protecting Against Faults in JPL Spacecraft; Algorithm Optimally Allocates Actuation of a Spacecraft; and Radar Interferometer for Topographic Mapping of Glaciers and Ice Sheets.

  11. S3 and S4 abundances and improved chemical kinetic model for the lower atmosphere of Venus

    NASA Astrophysics Data System (ADS)

    Krasnopolsky, Vladimir A.

    2013-07-01

    Mixing ratios of S3 and S4 are obtained from reanalysis of the spectra of true absorption in the visible range retrieved by Maiorov et al. (Maiorov, B.S. et al. [2005]. Solar Syst. Res. 39, 267-282) from the Venera 11 observations. These mixing ratios are fS3 = 11 ± 3 ppt at 3-10 km and 18 ± 3 ppt at 10-19 km, fS4 = 4 ± 4 ppt at 3-10 km and 6 ± 2 ppt at 10-19 km, and show a steep decrease in both S3 and S4 above 19 km. Photolysis rates of S3 and S4 at various altitudes are calculated using the Venera 11 spectra and constant photolysis yields as free parameters. The chemical kinetic model for the Venus lower atmosphere (Krasnopolsky, V.A. [2007]. Icarus 191, 25-37) has been improved by inclusion of the S4 cycle from Yung et al. (Yung, Y.L. et al. [2009]. J. Geophys. Res. 114, E00B34), reduction of the H2SO4 and CO fluxes at the upper boundary of 47 km by a factor of 4 in accord with the recent photochemical models for the middle atmosphere, by using a closed lower boundary for OCS instead of a free parameter for this species at the surface, and some minor updates. Our model with the S4 cycle but without the SO3 + 2 OCS reaction suggested by Krasnopolsky and Pollack (Krasnopolsky, V.A., Pollack, J.B. [1994]. Icarus 109, 58-78) disagrees with the observations of OCS, CO, S3, and S4. However, inclusion of the S4 cycle improves the model fit to all observational constraints. The best-fit activation energy of 7800 K for thermolysis of S4 supports the S4 enthalpy from Mills (Mills, K.C. [1974]. Thermodynamic Data for Inorganic Sulfides, Selenides and Tellurides. Butterworths, London). Chemistry of the Venus lower atmosphere is initiated by disequilibrium products H2SO4 and CO from the middle atmosphere, photolysis of S3 and S4, and thermochemistry in the lowest scale height. The chemistry is mostly driven by sulfur that is formed in a slow reaction SO + SO, produces OCS, and results in dramatic changes in abundances of OCS, CO, and free sulfur allotropes. The SX + OCS

  12. Mapping daily evapotranspiration at field to global scales using geostationary and polar orbiting satellite imagery

    NASA Astrophysics Data System (ADS)

    Anderson, M. C.; Kustas, W. P.; Norman, J. M.; Hain, C. R.; Mecikalski, J. R.; Schultz, L.; González-Dugo, M. P.; Cammalleri, C.; D'Urso, G.; Pimstein, A.; Gao, F.

    2010-08-01

    Thermal infrared (TIR) remote sensing of land-surface temperature (LST) provides valuable information about the sub-surface moisture status required for estimating evapotranspiration (ET) and detecting the onset and severity of drought. While empirical indices measuring anomalies in LST and vegetation amount (e.g., as quantified by the Normalized Difference Vegetation Index; NDVI) have demonstrated utility in monitoring ET and drought conditions over large areas, they may provide ambiguous results when other factors (soil moisture, advection, air temperature) are affecting plant stress. A more physically based interpretation of LST and NDVI and their relationship to sub-surface moisture conditions can be obtained with a surface energy balance model driven by TIR remote sensing. The Atmosphere-Land Exchange Inverse (ALEXI) model is a multi-sensor TIR approach to ET mapping, coupling a two-source (soil+canopy) land-surface model with an atmospheric boundary layer model in time-differencing mode to routinely and robustly map daily fluxes at continental scales and 5-10 km resolution using thermal band imagery and insolation estimates from geostationary satellites. A related algorithm (DisALEXI), spatially disaggregates ALEXI fluxes down to finer spatial scales using moderate resolution TIR imagery from polar orbiting satellites. An overview of this modeling approach is presented, along with strategies for fusing information from multiple satellite platforms and wavebands to map daily ET down to resolutions of 30 m. The ALEXI/DisALEXI model has potential for global applications by integrating data from multiple geostationary meteorological satellite systems, such as the US Geostationary Operational Environmental Satellites, the European Meteosat satellites, the Chinese Fen-yung 2B series, and the Japanese Geostationary Meteorological Satellites. Work is underway to further evaluate multi-scale ALEXI implementations over the US, Europe and, Africa and other continents

  13. Mapping daily evapotranspiration at field to continental scales using geostationary and polar orbiting satellite imagery

    NASA Astrophysics Data System (ADS)

    Anderson, M. C.; Kustas, W. P.; Norman, J. M.; Hain, C. R.; Mecikalski, J. R.; Schultz, L.; González-Dugo, M. P.; Cammalleri, C.; D'Urso, G.; Pimstein, A.; Gao, F.

    2011-01-01

    Thermal infrared (TIR) remote sensing of land-surface temperature (LST) provides valuable information about the sub-surface moisture status required for estimating evapotranspiration (ET) and detecting the onset and severity of drought. While empirical indices measuring anomalies in LST and vegetation amount (e.g., as quantified by the Normalized Difference Vegetation Index; NDVI) have demonstrated utility in monitoring ET and drought conditions over large areas, they may provide ambiguous results when other factors (e.g., air temperature, advection) are affecting plant functioning. A more physically based interpretation of LST and NDVI and their relationship to sub-surface moisture conditions can be obtained with a surface energy balance model driven by TIR remote sensing. The Atmosphere-Land Exchange Inverse (ALEXI) model is a multi-sensor TIR approach to ET mapping, coupling a two-source (soil + canopy) land-surface model with an atmospheric boundary layer model in time-differencing mode to routinely and robustly map daily fluxes at continental scales and 5 to 10-km resolution using thermal band imagery and insolation estimates from geostationary satellites. A related algorithm (DisALEXI) spatially disaggregates ALEXI fluxes down to finer spatial scales using moderate resolution TIR imagery from polar orbiting satellites. An overview of this modeling approach is presented, along with strategies for fusing information from multiple satellite platforms and wavebands to map daily ET down to resolutions on the order of 10 m. The ALEXI/DisALEXI model has potential for global applications by integrating data from multiple geostationary meteorological satellite systems, such as the US Geostationary Operational Environmental Satellites, the European Meteosat satellites, the Chinese Fen-yung 2B series, and the Japanese Geostationary Meteorological Satellites. Work is underway to further evaluate multi-scale ALEXI implementations over the US, Europe, Africa and other

  14. Up-regulation of the mammalian target of rapamycin complex 1 subunit Raptor by aldosterone induces abnormal pulmonary artery smooth muscle cell survival patterns to promote pulmonary arterial hypertension.

    PubMed

    Aghamohammadzadeh, Reza; Zhang, Ying-Yi; Stephens, Thomas E; Arons, Elena; Zaman, Paula; Polach, Kevin J; Matar, Majed; Yung, Lai-Ming; Yu, Paul B; Bowman, Frederick P; Opotowsky, Alexander R; Waxman, Aaron B; Loscalzo, Joseph; Leopold, Jane A; Maron, Bradley A

    2016-07-01

    Activation of the mammalian target of rapamycin complex 1 (mTORC1) subunit Raptor induces cell growth and is a downstream target of Akt. Elevated levels of aldosterone activate Akt, and, in pulmonary arterial hypertension (PAH), correlate with pulmonary arteriole thickening, which suggests that mTORC1 regulation by aldosterone may mediate adverse pulmonary vascular remodeling. We hypothesized that aldosterone-Raptor signaling induces abnormal pulmonary artery smooth muscle cell (PASMC) survival patterns to promote PAH. Remodeled pulmonary arterioles from SU-5416/hypoxia-PAH rats and monocrotaline-PAH rats with hyperaldosteronism expressed increased levels of the Raptor target, p70S6K, which provided a basis for investigating aldosterone-Raptor signaling in human PASMCs. Aldosterone (10(-9) to 10(-7) M) increased Akt/mTOR/Raptor to activate p70S6K and increase proliferation, viability, and apoptosis resistance in PASMCs. In PASMCs transfected with Raptor-small interfering RNA or treated with spironolactone/eplerenone, aldosterone or pulmonary arterial plasma from patients with PAH failed to increase p70S6K activation or to induce cell survival in vitro Optimal inhibition of pulmonary arteriole Raptor was achieved by treatment with Staramine-monomethoxy polyethylene glycol that was formulated with Raptor-small interfering RNA plus spironolactone in vivo, which decreased arteriole muscularization and pulmonary hypertension in 2 experimental animal models of PAH in vivo Up-regulation of mTORC1 by aldosterone is a critical pathobiologic mechanism that controls PASMC survival to promote hypertrophic vascular remodeling and PAH.-Aghamohammadzadeh, R., Zhang, Y.-Y., Stephens, T. E., Arons, E., Zaman, P., Polach, K. J., Matar, M., Yung, L.-M., Yu, P. B., Bowman, F. P., Opotowsky, A. R., Waxman, A. B., Loscalzo, J., Leopold, J. A., Maron, B. A. Up-regulation of the mammalian target of rapamycin complex 1 subunit Raptor by aldosterone induces abnormal pulmonary artery smooth

  15. Quantitative Measurements of the Contribution of Titan Tholin to the Mixing Ratio of Methane in Titan's Atmosphere

    NASA Astrophysics Data System (ADS)

    Khare, Bishun N.; Wells-Rutherford, S.; McPherson, S.; Sekine, Y.; Wilhite, P.; McKay, C.; Cruikshank, D.; Nna-Mvondo, D.

    2009-09-01

    Photochemical processes would have removed all methane in a short geological timeframe (Yung et al. 1984), and it is known that Titan's atmosphere contains an abundance of methane. In order to maintain the mixing ratio of CH4 in Titan's atmosphere, it was earlier thought that seas of acetylene and ethane were necessary to replenish it (Lunine et al. 1983). However, since the Cassini-Huygens mission, it is known that this is not the case. Some possible explanations for the abundance of methane include cryovolcanism as a source of new methane (Tobie et al. 2006) and methanogenic bacteria recycling methane (McKay and Smith 2005). Our research has shown that the organic solids in Titan's atmosphere known as Tholins absorb CH4, C2H6, NH3, etc., and that it desorbs these gases when left in vacuum. It is possible that because of the desorption of methane, the mixing ratio in the atmosphere is at least partially maintained by this method of recycling. Previously, we have reported the contribution of Titan Tholin to the mixing ratio of CH4 in Titan (Khare et al. 2008). Our on going efforts are to determine the quantitative mixing ratio of CH4 in Titan's atmosphere. To accomplish this, we have designed an experiment that will synthesize the Titan Tholin and let it degas. We will calibrate absorbance vs. pressure and then compare it to the absorbance from the degassing Tholin over time in order to quantify the amount of methane the Tholin produces. We will report the progress of this work at the 2009 DPS meeting.

  16. Infrared Spectroscopy of Ammonia - Hydrocarbon Ices Relevant to Jupiter's Clouds

    NASA Astrophysics Data System (ADS)

    Engel, P. A.; Kalogerakis, K. S.

    2005-12-01

    Observational evidence and thermochemical models indicate an abundance of ammonia ice clouds in Jupiter's atmosphere. However, spectrally identifiable ammonia ice clouds are found covering less than 1% of Jupiter's atmosphere, notably in turbulent areas.1,2 This discrepancy highlights an important gap in our understanding of ammonia and its spectral signatures in Jupiter's atmosphere. Current literature suggests two possible explanations: coating by a hydrocarbon haze and/or photochemical processing ("tanning").2,3 We are performing laboratory experiments that investigate the above hypotheses. Thin films of ammonia ices are deposited in a cryogenic apparatus, coated with hydrocarbons, and characterized by infrared spectroscopy. The ice films can be irradiated by ultraviolet light. These spectroscopic measurements aim to identify the photophysical and chemical processes that control the optical properties of the ice mixtures and quantify their dependence on the identity of the coating, the temperature, and the ice composition. Our current results indicate a consistent suppression of the ammonia absorption feature at 3 μm with coverage by thin layers of hexane, cyclohexane, and benzene. Furthermore, strongest suppression is observed in the case of benzene, followed in magnitude by hexane and cyclohexane. Funding from the NSF Planetary Astronomy Program under grant AST-0206270 is gratefully acknowledged. The participation of Patricia A. Engel was made possible by the NSF Research Experiences for Undergraduates Program under grant PHY-0353745. 1. S. K. Atreya, A.-S. Wong, K. H. Baines, M. H. Wong, T. C. Owen, Planet. Space Science 53, 498 (2005). 2. K. H. Baines, R. W. Carlson, and L. W. Kamp, Icarus 159, 74 (2002). 3. A.-S. Wong, Y. L. Yung, and A. J. Friedson, Geophys. Res. Lett. 30, 1447 (2003).

  17. Studies on Ammonia Spectral Signatures Relevant to Jupiter's Clouds

    NASA Astrophysics Data System (ADS)

    Oza, A. U.; Marschall, J.; Wong, M. H.; Kalogerakis, K. S.

    2006-12-01

    Observational evidence and thermochemical models indicate an abundance of ammonia ice clouds in Jupiter's atmosphere. However, spectrally identifiable ammonia ice clouds are found covering less than 1% of Jupiter's atmosphere, notably in turbulent areas [1,2]. Current literature suggests two possible explanations: coating by a hydrocarbon haze and/or photochemical processing ("tanning")[2,3]. We are pursuing a research program investigating the above hypotheses. In the experiments, thin films of ammonia ices are deposited in a cryogenic apparatus, coated with hydrocarbons, and characterized by infrared spectroscopy. The ice films can be irradiated by ultraviolet light to study their photochemistry. The spectroscopic measurements aim to identify the processes that control the optical properties of the ice mixtures and quantify their dependence on the identity of the coating, the temperature, and the ice composition. We have observed a consistent suppression of the ammonia absorption feature at 3 μm with coverage by thin layers of hydrocarbons. Modeling calculations of the multi-layer thin films assist in the interpretation of the experimental results and reveal the role of optical interference in masking the aforementioned ammonia spectral feature. The implications of these results for Jupiter's atmosphere will be discussed. Funding from the NSF Planetary Astronomy Program under grant AST-0206270 and from the NASA Outer Planets Research Program under grant NNG06GF37G is gratefully acknowledged. The participation of Anand Oza (Princeton University) was made possible by the NSF Research Experiences for Undergraduates Program under grant PHY-0353745. 1. S. K. Atreya, A.-S. Wong, K. H. Baines, M. H. Wong, T. C. Owen, Planet. Space Science 53, 498 (2005). 2. K. H. Baines, R. W. Carlson, and L. W. Kamp, Icarus 159, 74 (2002). 3. A.-S. Wong, Y. L. Yung, and A. J. Friedson, Geophys. Res. Lett. 30, 1447 (2003).

  18. Studies on Ammonia Spectral Signatures Relevant to Jupiter's Clouds

    NASA Astrophysics Data System (ADS)

    Kalogerakis, Konstantinos S.; Oza, A. U.; Marschall, J.; Wong, M. H.

    2006-09-01

    Observational evidence and thermochemical models indicate an abundance of ammonia ice clouds in Jupiter's atmosphere. However, spectrally identifiable ammonia ice clouds are found covering less than 1% of Jupiter's atmosphere, notably in turbulent areas [1,2]. Current literature suggests two possible explanations: coating by a hydrocarbon haze and/or photochemical processing ("tanning") [2,3]. We are pursuing a research program investigating the above hypotheses. In the experiments, thin films of ammonia ices are deposited in a cryogenic apparatus, coated with hydrocarbons, and characterized by infrared spectroscopy. The ice films can be irradiated by ultraviolet light to study their photochemistry. The spectroscopic measurements aim to identify the processes that control the optical properties of the ice mixtures and quantify their dependence on the identity of the coating, the temperature, and the ice composition. We have observed a consistent suppression of the ammonia absorption feature at 3 μm with coverage by thin layers of hydrocarbons. Modeling calculations of the multi-layer thin films assist in the interpretation of the experimental results and reveal the role of optical interference in masking the aforementioned ammonia spectral feature. The implications of these results for Jupiter's atmosphere will be discussed. Funding from the NSF Planetary Astronomy Program under grant AST-0206270 and from the NASA Outer Planets Research Program under grant NNG06GF37G is gratefully acknowledged. The participation of Anand Oza (Princeton University) was made possible by the NSF Research Experiences for Undergraduates Program under grant PHY-0353745. 1. S. K. Atreya, A.-S. Wong, K. H. Baines, M. H. Wong, T. C. Owen, Planet. Space Science 53, 498 (2005). 2. K. H. Baines, R. W. Carlson, and L. W. Kamp, Icarus 159, 74 (2002). 3. A.-S. Wong, Y. L. Yung, and A. J. Friedson, Geophys. Res. Lett. 30, 1447 (2003).

  19. Mapping the clouds of Titan over 3.5 years with VIMS/Cassini: Implications for Titan climatology

    NASA Astrophysics Data System (ADS)

    Rodriguez, S.; Le Mouélic, S.; Rannou, P.; Sotin, C.; Tobie, G.; Barnes, J. W.; Griffith, C. A.; Hirtzig, M.; Pitman, K. M.; Brown, R. H.; Baines, K. H.; Buratti, B. J.; Clark, R. N.; Nicholson, P. D.

    2008-11-01

    The N_2-rich atmosphere of Saturn's largest moon Titan contains a few percent of methane (CH_4) ( te{}Kuiper 1944) which dissociates to produce a plethora of organic compounds, the most abundant of which is ethane (C_2H_6) (Yung et al. 1984; Toublanc et al. 1995). Methane and ethane are involved in a cycle similar to the terrestrial hydrological cycle, including clouds, rain, surface or sub-surface liquids and evaporation (Flasar 1998; Tokano 2001; Rannou et al. 2006). Clouds are visible consequences of meteorological activity on Titan. The Cassini spacecraft, in orbit in the Saturnian system since July 2004, has provided an unprecedented view of Titan's clouds. We present here the first comprehensive map of cloud events, detected from the Visual and Infrared Mapping Spectrometer onboard the Cassini spacecraft. We detect more than one hundred and fifty cloud events between July 2004 and December 2007. Three categories of clouds have been identified: 1) bursts of clouds at the south pole, 2) a long lived widespread cloud system at the north pole, and 3) transient temperate clouds centered around 40^oS which may display longitudinal variations. These observations are consistent with control of the cloud spatial distribution dominated by the global atmospheric circulation, possibly combined with some geographic forcing (gravity waves imposed by Saturn's tides and local surface sources of methane), mostly observable at temperate latitudes. Global circulation models (GCM) predict dramatic changes in the cloud activity as Titan's equinox approaches (2009). Such long-term variations should be observed during the extension of the Cassini mission.

  20. Coupled Sulfur and Chlorine Chemistry in Venus' Upper Cloud Layer

    NASA Astrophysics Data System (ADS)

    Mills, Franklin P.

    2006-09-01

    Venus' atmosphere likely contains a rich variety of sulfur and chlorine compounds because HCl, SO2, and OCS have all been observed. Photodissociation of CO2 and SO2 in the upper cloud layer produces oxygen which can react directly or indirectly with SO2 to form SO3 and eventually H2SO4. Photodissociation of HCl within and above the upper cloud layer produces chlorine which can react with CO and O2 to form ClCO and ClC(O)OO. These two species have been identified as potentially critical intermediaries in the production of CO2. Much less work has been done on the potential coupling between sulfur and chlorine chemistry that may occur within the upper cloud layer. Several aspects have been examined in recent modeling: (1) linkage of the CO2 and sulfur oxidation cycles (based on ideas from Yung and DeMore, 1982), (2) reaction of Cl with SO2 to form ClSO2 (based on ideas from DeMore et al., 1985), and (3) the chemistry of SmCln for m,n = 1,2 (based on preliminary work in Mills, 1998). Initial results suggest the chemistry of SmCln may provide a pathway for accelerated production of polysulfur, Sx, if the oxygen abundance in the upper cloud layer is as small as is implied by the observational limit on O2 (Trauger and Lunine, 1983). Initial results also suggest that ClSO2 can act as a buffer which helps increase the scale height of SO2 and decrease the rate of production of H2SO4. This presentation will describe the results from this modeling; discuss their potential implications for the CO2, sulfur oxidation, and polysulfur cycles; and outline key observations from Venus Express that can help resolve existing questions concerning the chemistry of Venus' upper cloud. Partial funding for this research was provided by the Australian Research Council.

  1. Observations of Altitude Dependence and Temporal Variation of ClO in the Venus Mesosphere

    NASA Astrophysics Data System (ADS)

    Sandor, Brad J.; Clancy, R. Todd

    2015-11-01

    Analysis of the first observations of ClO in the Venus mesosphere indicate ClO is present above 85 +/-3 km altitude and not below. The retrieved nightside mean abundances show a factor of 2 decrease between observation dates Oct. 23 and Nov. 11, 2015, with change between the two dates evident at more than two sigma confidence. Abundances and altitude distributions are retrieved from submm spectroscopic observations of the 352.88 GHz line of 35ClO (made with the James Clerk Maxwell Telescope - JCMT - located an Mauna Kea, Hawaii).Detection of ClO in the Venus atmosphere confirms a theory put forward by Yung and DeMore (1982) that the Venus atmosphere is stabilized as CO2 due to chlorine catalytic recombination of CO and O. (Without some form of catalysis, the Venus atmosphere would have 10s of percent CO and O2, but it is in fact 97% CO2 and 3% N2, with only trace amounts of CO and O2.) Detailed retrieval of ClO abundances and altitude distributions (the focus of this talk) provides greater insight to the catalytic process, and to other aspects of Venus atmospheric chlorine chemistry. We compare findings of our quantitave retrieval with predictions of photochemical models, and discuss the implications for chlorine photochemisty of the Venus atmosphere. We also discuss retrieved ClO temporal variation with that of upper mesospheric HCl (Sandor and Clancy, 2012).[We acknowledge funding of this project by NASA grants NNX10AB33G, NNX12AI32G, and NNX14AK05G, as well as NSF grant AST-1312985.

  2. Cellular mechanisms and behavioral consequences of Kv1.2 regulation in the rat cerebellum

    PubMed Central

    Williams, Michael R; Fuchs, Jason R; Green, John T; Morielli, Anthony D

    2012-01-01

    The potassium channel Kv1.2 alpha-subunit is expressed in cerebellar Purkinje cell (PC) dendrites where its pharmacological inhibition increases excitability (Khavandgar et al., 2005). Kv1.2 is also expressed in cerebellar basket cell (BC) axon terminals (Sheng et al., 1994), where its blockade increases BC inhibition of PCs (Southan and Robertson, 1998a). Secretin receptors are also expressed both in PC dendrites and BC axon terminals (reviewed in (Yuan et al.). The effect of secretin on PC excitability is not yet known, but, like Kv1.2 inhibitors, secretin potently increases inhibitory input to PCs (Yung et al., 2001). This suggests secretin may act in part by suppressing Kv1.2. Receptor-mediated endocytosis is a mechanism of Kv1.2 suppression (Nesti et al., 2004). This process can be regulated by protein kinase A (PKA) (Connors et al., 2008). Since secretin receptors activate PKA (Wessels-Reiker et al., 1993), we tested the hypothesis that secretin regulates Kv1.2 trafficking in the cerebellum. Using cell surface protein biotinylation of rat cerebellar slices, we found secretin decreased cell-surface Kv1.2 levels by modulating Kv1.2 endocytic trafficking. This effect was mimicked by activating adenylate cyclase (AC) with forskolin, and was blocked by pharmacological inhibitors of AC or PKA. Imaging studies identified the BC axon terminal and Purkinje cell dendrites as loci of AC-dependent Kv1.2 trafficking. The physiological significance of secretin regulated Kv1.2 endocytosis is supported by our finding that infusion into the cerebellar cortex of either the Kv1.2 inhibitor Tityustoxin-Kα, or of the Kv1.2 regulator secretin, significantly enhances acquisition of eyeblink conditioning in rats. PMID:22764231

  3. [From influence to confluence : positioning the history of pre-modern Korean medicine in East Asia].

    PubMed

    Suh, Soyoung

    2010-12-31

    This article surveys studies focusing on pre-modern Korean medicine, which are both written in English and analyzed primary sources up to 1876. Overall, the history of pre-modern Korean medicine is an unknown filed in Anglophone academia. Yung Sik Kim's, James Palais's, and Carter Ecart's problematization of the nationalist framework of Korean scholarship partially explains the marginality of the field. Addressing these criticisms, this review argues that pre-modern Korean medicine's uneasy task lies in both elaborating Korea's own experience of medicine, while simultaneously avoiding making the "Korean" category itself essential. Korean narratives of premodern medicine need to go beyond the mere territorilalization of Korean medicine against its Chinese, Japanese, or Western counterparts, thereby to tackle the field's own boundary of research objects. The existing scholarship in English responds to this challenge by primarily examining the way in which Korea has shared textual tradition with China. Sirhak scholars' innovation in medicine, visual representation of Tongŭi bogam, Korean management of epidemics in the eleventh century, and Korean indexing of local botanicals, engages not only native achievements, but also the process of modifying medicine across geographical and political boundaries. More to the point, the emerging native narratives, although written in Korean, are implicitly resonant with those currently present in Anglophone academia. Taking "tension," "intertextuality," and "local traits" as a lens, this article assesses a series of current research in Korea. Aiming to go beyond appeals for a "distinctively" Korean experience of medicine, the future study of Korean pre-modern medicine will further elucidate confluences of different flows, such as "Chinese and Korean," "universal and local," "center and periphery," and "native and foreign," which will eventually articulate a range of Korean techniques of creating a bricolage in medicine. PMID

  4. Diverse interface effects on ferroelectricity and magnetoelectric coupling in asymmetric multiferroic tunnel junctions: the role of the interfacial bonding structure.

    PubMed

    Liu, X T; Chen, W J; Jiang, G L; Wang, B; Zheng, Yue

    2016-01-28

    Interface and size effects on electric/magnetic orders and magnetoelectric coupling are vital in the modern application of quantum-size functional devices based on multiferroic tunnel junctions. In order to give a comprehensive study of the interface and size effects, the properties of a typical asymmetric multiferroic tunnel junction, i.e., Fe/BaTiO3/Co, have been calculated using the first-principles simulations. Most importantly, all of the eight possible structures with four combinations of electrode/ferroelectric interfaces (i.e., Fe/BaO, Fe/TiO2, Co/BaO and Co/TiO2) and a series of barrier thicknesses have been taken into account. In this work, the equilibrium configurations, polarization, charge density, spin density and magnetic moments, etc., have been completely simulated and comprehensively analyzed. It is found that the ferroelectric stability is determined as a competition outcome of the strength of short-range chemical bondings and long-range depolarization/built-in fields. M/BaO (M = magnetic metal) terminations show an extraordinary enhancement of local polarization near the interface and increase the critical thickness of ferroelectricity. The bistability of polarization is well kept at the M/TiO2 interface. At the same time, the induced magnetic moment on atoms at the interfaces is rather localized and dominated by the local interfacial configuration. Reversing electric polarization can switch the induced magnetic moments, wherein atoms in M-O-Ti and M-Ti-O chains show preference for being magnetized. In addition, the difference between the sum of the interfacial magnetic moments is also enlarged with the increase of the barrier thickness. Our study provides a comprehensive and detailed reference to the manipulation and utilization of the interface, size and magnetoelectric effects in asymmetric multiferroic tunnel junctions.

  5. Geotechnical and rheological characteristics of waste materials taken from abandoned mine deposit

    NASA Astrophysics Data System (ADS)

    Jeong, Sueng-Won; Ji, Sang Woo; Fukuoka, Hiroshi

    2014-05-01

    According to the Ministry of Trade, Industry & Energy in Korean (MOTIE), approximately 5,000 metal mines are spread in the Republic of Korea, but almost 80% mines are still left without any proper remediation and cleanup. The physic-chemical properties of waste materials in the mountainous area are strongly affected by heavy rainfall. Failed sediments pose the largest threat to the mountain communities and environments. In particular, a significant amount of heavy metals, such as arsenic, cadmium, copper, zinc, lead etc., is introduced to soil systems. This study examined the geotechnical and rheological characteristics of waste rock materials collected from mine deposits, located in Imgi-ri, Busan Metropolitan City, Korea. We used a ring shear apparatus for geotechnical properties and a rheometer for rheological properties. The materials collected from mines are classified as gravelly sand soils. A series of drained and undrained ring shear tests were performed to examine the stress characteristics with regard to (i) shearing time dependency, (ii) shear speed dependency, and (iii) normal stress dependency. In addition, the grain crushing in the shear zone was examined to explain a high mobile failed masses. This work is also concerned with post-failure characteristics of rainfall-induced debris flows. From the rheological tests, the materials examined exhibited the shear-thinning behavior, which is the viscosity decreases with increasing shear rates. In the relationship between shear stress and shear rate, one of simplest rheological models, i.e., the ideal Bingham fluid model, is selected to examine the debris flow potential. There are positive relationships between the volumetric concentration of sediment ranging from 50% to 65% and rheological values (i.e., yield stress and viscosities). However, the difference in rheological parameters is of significance for given shear rates. The effect of wall-slip in different geometries between ball and vane

  6. Resolution analysis of high-resolution marine seismic data acquired off Yeosu, Korea

    NASA Astrophysics Data System (ADS)

    Lee, Ho-Young; Kim, Wonsik; Koo, Nam-Hyung; Park, Keun-Pil; Yoo, Dong-Geun; Kang, Dong-Hyo; Kim, Young-Gun; Seo, Gab-Seok; Hwang, Kyu-Duk

    2014-05-01

    High-resolution marine seismic surveys have been conducted for the mineral exploration and engineering purpose survey. To improve the quality of high-resolution seismic data, small-scaled multi-channel seismic techniques are used. In this study, we designed high-resolution marine seismic survey using a small airgun and an 8-channel streamer cable and analyzed the resolution of the seismic data related to acquisition and processing parameters. The field survey was conducted off Yeosu, Korea where the stratified thin sedimentary layers are deposited. We used a 30 in3 airgun and an 8-channel streamer cable with a 5 m group interval. We shoot the airgun with a 5 m shot interval and recorded digital data with a 0.1 ms sample interval and 1 s record length. The offset between the source and the first channel was 20 m. We processed the acquired data with simple procedure such as gain recovery, deconvolution, digital filtering, CMP sorting, NMO correction, static correction and stacking. To understand the effect of the acquisition parameters on the vertical and horizontal resolution, we resampled the acquired data using various sample intervals and CMP intervals and produced seismic sections. The analysis results show that the detailed subsurface structures can be imaged with good resolution and continuity using acquisition parameters with a sample interval shorter than 0.2 ms and a CMP interval shorter than 2.5 m. A high-resolution marine 8-channel airgun seismic survey using appropriate acquisition and processing parameters can be effective in imaging marine subsurface structure with a high resolution. This study is a part of a National Research Laboratory (NRL) project and a part of an Energy Technology Innovation (ETI) Project of the Korea Institute of Energy Technology Evaluation and Planning (KETEP), funded by the Ministry of Trade, Industry and Energy (MOTIE). The authors thank the officers and crew of the R/V Tamhae II for their efforts in the field survey.

  7. Potential Impact of the National Plan for Future Electric Power Supply on Air Quality in Korea

    NASA Astrophysics Data System (ADS)

    Shim, C.; Hong, J.

    2014-12-01

    Korean Ministry of Trade, Industry and Energy (MOTIE) announced the national plan for Korea's future electric power supply (2013 - 2027) in 2013. According to the plan, the national demand for electricity will be increased by 60% compared to that of 2010 and primary energy sources for electric generation will still lean on the fossil fuels such as petroleum, LNG, and coal, which would be a potential threat to air quality of Korea. This study focused on two subjects: (1) How the spatial distribution of the primary air pollutant's emissions (i.e., NOx, SOx, CO, PM) will be changed and (2) How the primary emission changes will influence on the national ambient air quality including ozone in 2027. We used GEOS-Chem model simulation with modification of Korean emissions inventory (Clean Air Policy Support System (CAPSS)) to simulate the current and future air quality in Korea. The national total emissions of CO, NOx, SOx, PM in year 2027 will be increased by 3%, 8%, 13%, 2%, respectively compared to 2010 and there are additional concern that the future location of the power plants will be closer to the Seoul Metropolitan Area (SMA), where there are approximately 20 million population vulnerable to the potentially worsened air quality. While there are slight increase of concentration of CO, NOx, SOx, and PM in 2027, the O3 concentration is expected to be similar to the level of 2010. Those results may imply the characteristics of air pollution in East Asia such as potentially severe O3 titration and poorer O3/CO or O3/NOx ratio. Furthermore, we will discuss on the impact of transboundary pollution transport from China in the future, which is one of the large factors to control the air quality of Korea.

  8. Comparison of Sub1 markers and their combinations for submergence tolerance and analysis of adaptation strategies of rice in rainfed lowland ecology.

    PubMed

    Pradhan, Sharat Kumar; Barik, Saumya Ranjan; Sahoo, Jayashree; Pandit, Elssa; Nayak, Deepak Kumar; Pani, Dipti Ranjan; Anandan, Annamalai

    2015-10-01

    Ninety lowland rice cultivars of the eastern region of India were collected and screened for submergence and water logging tolerance and further used for validating the efficiency of molecular markers and their combinations for submergence tolerance. Submergence tolerance and elongation ability of the tested genotypes were measured in screening tanks along with tolerant and susceptible checks. The genotypes FR13A, Khoda, CR Dhan 300, Savitri Sub1, IR64 Sub1, IC-568009 and IC-568842 exhibited high submergence tolerance may be used as donor in the breeding program. Landrace 'Khoda' showed tolerance to submergence with moderate elongation ability for adaption. Boitalpakhia, Gayatri, Atiranga, Aghonibora, Chakaakhi, Moti, IC-567993 and IC-568921 possessed both characters of moderate elongation ability and moderate tolerance to submergence. Both of these traits are required for lowland varieties of eastern India to survive under flash flood and accumulated stagnant water conditions. RM8300, Sub1A203, AEX, Sub1BC2 and Sub1C173 were employed for molecular screening to identify the submergence-tolerant genotypes. Sub1A203 was capable of differentiating the tolerant and susceptible genotypes into groups. RM8300 and Sub1BC2 could also differentiate the genotypes with inclusion of some susceptible genotypes. The AEX and Sub1C173 marker could not show discrimination among the genotypes with respect to the traits. Using Sub1A203+Sub1BC2 was better amongst the combinations studied. The results of the study indicated a trend toward a negative association of Sub1BC2 with submergence tolerance while AEX and Sub1C marker did not show any significant association. The donors identified can be useful as parental lines while the molecular markers can be used for marker-assisted breeding work. PMID:26321658

  9. Human Cytomegalovirus UL97 Kinase Activity Is Required for the Hyperphosphorylation of Retinoblastoma Protein and Inhibits the Formation of Nuclear Aggresomes

    SciTech Connect

    Prichard, Mark N.; Sztul, Elizabeth; Daily, Shannon L.; Perry, Amie L.; Frederick, Samuel L.; Gill, Rachel B.; Hartline, Caroll B.; Streblow, Daniel N.; Varnum, Susan M.; Smith, Richard D.; Kern, Earl R.

    2008-05-01

    Cells infected with human cytomegalovirus in the absence of UL97 kinase activity produce large nuclear aggregates that sequester considerable quantities of viral proteins. A transient expression assay suggested that pp71 and IE1 were also involved in this process, and this suggestion was significant, since both proteins have been reported to interact with components of promyelocytic leukemia (PML) bodies (ND10) and also interact functionally with retinoblastoma pocket proteins (RB). PML bodies have been linked to the formation of nuclear aggresomes, and colocalization studies suggested that viral proteins were recruited to these structures and that UL97 kinase activity inhibited their formation. Proteins associated with PML bodies were examined by Western blot analysis, and pUL97 appeared to specifically affect the phosphorylation of RB in a kinasedependent manner. Three consensus RB binding motifs were identified in the UL97 kinase, and recombinant viruses were constructed in which each was mutated to assess a potential role in the phosphorylation of RB and the inhibition of nuclear aggresome formation. The mutation of either the conserved LxCxE RB binding moti for the lysine required for kinase activity impaired the ability of the virus to stabilize and phosphorylate RB. We concluded from these studies that both UL97 kinase activity and the LxCxE RB binding motif are required for the phosphorylation and stabilization of RB in infected cells and that this effect can be antagonized by the antiviral drug maribavir. These data also suggest a potential link between RB function and the formation of aggresomes.

  10. SU-E-J-217: Accuracy Comparison Between Surface and Volumetric Registrations for Patient Setup of Head and Neck Radiation Therapy

    SciTech Connect

    Kim, Y; Li, R; Na, Y; Jenkins, C; Xing, L; Lee, R

    2014-06-01

    Purpose: Optical surface imaging has been applied to radiation therapy patient setup. This study aims to investigate the accuracy of the surface registration of the optical surface imaging compared with that of the conventional method of volumetric registration for patient setup in head and neck radiation therapy. Methods: Clinical datasets of planning CT and treatment Cone Beam CT (CBCT) were used to compare the surface and volumetric registrations in radiation therapy patient setup. The Iterative Closest Points based on point-plane closest method was implemented for surface registration. We employed 3D Slicer for rigid volumetric registration of planning CT and treatment CBCT. 6 parameters of registration results (3 rotations and 3 translations) were obtained by the two registration methods, and the results were compared. Digital simulation tests in ideal cases were also performed to validate each registration method. Results: Digital simulation tests showed that both of the registration methods were accurate and robust enough to compare the registration results. In experiments with the actual clinical data, the results showed considerable deviation between the surface and volumetric registrations. The average root mean squared translational error was 2.7 mm and the maximum translational error was 5.2 mm. Conclusion: The deviation between the surface and volumetric registrations was considerable. Special caution should be taken in using an optical surface imaging. To ensure the accuracy of optical surface imaging in radiation therapy patient setup, additional measures are required. This research was supported in part by the KIST institutional program (2E24551), the Industrial Strategic technology development program (10035495) funded by the Ministry of Trade, Industry and Energy (MOTIE, KOREA), and the Radiation Safety Research Programs (1305033) through the Nuclear Safety and Security Commission, and the NIH (R01EB016777)

  11. Impact of learning nutrition on medical students: their eating habits, knowledge and confidence in addressing dietary issues of patients.

    PubMed

    Shaikh, Shama; Dwivedi, Shraddha; Khan, Maroof A

    2011-12-01

    Nutrition is an important component in the treatment of acute and chronic diseases and is a cornerstone in strategies for disease prevention and health promotion. Despite the acknowledged importance of nutrition, there is evidence to indicate that the nutrition training of medical students is inadequate in both quality and quantity. The study aimed to know the dietary/eating habits of medical students, assess their knowledge on nutrition and to assess their confidence in addressing the dietary issues of patients. It was a cross-sectional study conducted on final year medical students, interns and postgraduate students of Moti Lal Nehru Government Medical College, Allahabad. The sampling was purposive and a total of 218 participated in the study voluntarily. Overall 55% of the students were less knowledgeable and only 45% of them were more knowledgeable. Most (62%) postgraduates were more knowledgeable (p < 0.001). Majority of them (89.9%) were having healthy eating habits. There was no association between their healthy habits and more knowledge (p > 0.340). Only 45.4% of them were confident in assessing the diet of patients and 44% of them were confident in recommending change of diet in patients. However this study shows no association between increase in the level of knowledge and confidence levels of the students (p > 0.339 and p > 0.109) suggesting that we need to incorporate innovative teaching methods to increase their confidence. Most students (79%) said that the medical curriculum was either just enough or not enough in preparing them to deal with the dietary issues of patients and 55% of them were of the opinion that the faculty should be trained in nutrition. The study results intend to stimulate active consideration of proper role of nutrition learning in medical education.

  12. WE-G-18A-07: Clinical Evaluation of Normalized Metal Artifact Reduction in KVCT Using MVCT Prior Images (MVCT-NMAR) Technique in Radiotherapy

    SciTech Connect

    Paudel, M; MacKenzie, M; Fallone, B; Rathee, S

    2014-06-15

    Purpose: To evaluate the metal artifacts in diagnostic kVCT images of patients that are corrected using a normalized metal artifact reduction method with MVCT prior images, MVCT-NMAR. Methods: An MVCTNMAR algorithm was developed and applied to five patients: three with bilateral hip prostheses, one with unilateral hip prosthesis and one with dental fillings. The corrected images were evaluated for visualization of tissue structures and their interfaces, and for radiotherapy dose calculations. They were also compared against the corresponding images corrected by a commercial metal artifact reduction technique, O-MAR, on a Phillips™ CT scanner. Results: The use of MVCT images for correcting kVCT images in the MVCT-NMAR technique greatly reduces metal artifacts, avoids secondary artifacts, and makes patient images more useful for correct dose calculation in radiotherapy. These improvements are significant over the commercial correction method, provided the MVCT and kVCT images are correctly registered. The remaining and the secondary artifacts (soft tissue blurring, eroded bones, false bones or air pockets, CT number cupping within the metal) present in O-MAR corrected images are removed in the MVCT-NMAR corrected images. Large dose reduction is possible outside the planning target volume (e.g., 59.2 Gy in comparison to 52.5 Gy in pubic bone) when these MVCT-NMAR corrected images are used in TomoTherapy™ treatment plans, as the corrected images no longer require directional blocks for prostate plans in order to avoid the image artifact regions. Conclusion: The use of MVCT-NMAR corrected images in radiotherapy treatment planning could improve the treatment plan quality for cancer patients with metallic implants. Moti Raj Paudel is supported by the Vanier Canada Graduate Scholarship, the Endowed Graduate Scholarship in Oncology and the Dissertation Fellowship at the University of Alberta. The authors acknowledge the CIHR operating grant number MOP 53254.

  13. Fluid Flow Patterns Derived from Bottom Simulating Reflections Offshore Southwestern Taiwan

    NASA Astrophysics Data System (ADS)

    Chen, L.; Wu, S.; Chi, W.; Liu, C.; Wang, Y.

    2012-12-01

    Fluid migration pattern is important for understanding the structural characteristics of a mountain belt and for hydrocarbon exploration. However, these patterns are difficult to measure on the seafloor. Using phase properties of the gas hydrates, we studied the fluid flow patterns offshore Southwestern Taiwan. Seismic explorations in this region show a wide-spread bottom-simulating-reflector (BSR), which is interpreted as the bottom of the gas hydrate stability zone. It provides us an opportunity to study possible fluid flow patterns at several hundred meters sub-bottom depths of the marine sediments. We used BSR-based geothermal gradient patterns to derive 1D vertical fluid flow models by analyzing the Péclet numbers. We found the regional fluid flow rates ranges from 6 cm/yr to 43 cm/yr and also discovered two prospect sites: Yung-An Ridge and Formosa Ridge in active and passive margins respectively. Next, we forward-modeled 2D steady-state temperature fields of these two sites to account for the topographic effects to compare with the BSR-based temperature. The discrepancy between the 2D conductive thermal model and the BSR-based temperature was interpreted as a result of fluid migration. We discovered our interpreted fluid migration patterns are pretty consistent with the regional structure, and the BSR-based temperatures are about 2~3oC higher than the conduction model near faults and chimney zones. We interpret that it is possible active dewatering inside the accretionary prism to allow fluid to migrate upward here. For Formosa Ridge in the passive margin, the BSR-based temperatures are about 4-5oC colder than the theoretical model, especially on the flanks. We interpret that cold seawater is moving into the ridge from the flanks, cooling the ridge, and then some of the fluid is expelled at the ridge top. The shallow temperature fields are strongly affected by 2D or even 3D topographic effects, but we can still gain much information regarding fluid flow

  14. Geological Processes Affecting the Thermal Structures of Shallow Seafloor: An Example from offshore SW Taiwan

    NASA Astrophysics Data System (ADS)

    Chen, Liwen; Chi, Wu-Cheng; Wu, Shao-Kai; Liu, Char-Shine; Lu, Chia-Yu

    2014-05-01

    Fluid migration pattern is important for understanding the structural features of a mountain belt and for hydrocarbon exploration. However, these patterns are difficult to measure on the seafloor. Using phase properties of the gas hydrates, we studied the fluid flow patterns offshore southwestern Taiwan. Seismic explorations in this region show wide spreading bottom-simulating-reflectors (BSR), which is interpreted as the bottom of the gas hydrate stability zone. It provides us an opportunity to study possible fluid flow patterns at several hundred meters sub-bottom depths of the marine sediments. First, we used BSR-based geothermal gradient patterns to derive 1D vertical fluid flow models by analyzing the Péclet numbers. We found the regional fluid flow rates ranges from 6 cm/yr to 43 cm/yr, then we also discovered several prospect sites to examine the fluid migration pattern in the environs of active, passive and deformation front. Next, we forward 2D steady-state temperature fields of these sites to account for the topographic effects to compare with the BSR-based temperature. The discrepancy between the 2D conductive thermal model and the BSR-based temperature was interpreted as a result of fluid migration. And furthermore, we built 3D steady-state temperature fields, for comparing with BSR-based temperatures, to detail describe the regional temperature discrepancy with the structure evolution in 3D seismic data. We discovered our interpreted fluid migration patterns are consistent with the regional structure. The BSR-based temperatures in Yung-An Ridge, which is in active margin, are higher than the conduction model near faults and chimney zones, we interpret that it is possible active dewatering inside the accretionary prism to allow fluid to migrate upward here. For the upper reach of Peng-Hu Canyon, which is across deformation front, we found the disequilibrium temperature field probably induced by the recently landslide. For the Formosa Ridge in passive

  15. The distribution of atomic hydrogen and oxygen in the magnetosphere of Saturn

    NASA Astrophysics Data System (ADS)

    Melin, Henrik; Shemansky, Don E.; Liu, Xianming

    2009-12-01

    The intensity of H Ly α1216A˚ ( 2P- 1S) and OI 1304A˚ ( 2p33s3S-2p4P) is mapped in the magnetosphere of Saturn using the ultraviolet imaging spectrograph (UVIS) [Esposito, L.W., Barth, C.A., Colwell, J.E., Lawrence, G.M., McClintock, W.E., Stewart, A.I.F., Keller, H.U., Korth, A., Lauche, H., Festou, M.C., Lane, A.L., Hansen, C.J., Maki, J.N., West, R.A., Jahn, H., Reulke, R., Warlich, K., Shemansky, D.E., Yung, Y.L., 2004. The Cassini ultraviolet imaging spectrograph investigation. Space Science Reviews 115, 299-361] onboard Cassini. Spatial coverage is built up by stepping the slit sequentially across the system (system scan). Data are obtained at a large range of space-craft-Saturn distances. The observed atomic hydrogen distribution is very broad, extending beyond 40RS in the equatorial plane, with the intensity increasing with decreasing distances to Saturn. The distribution displays persistent local-time asymmetries, and is seen connecting continuously to the upper atmosphere of the planet at sub-solar latitudes located well outside of the equatorial (ring) plane. This is consistent with the source of the atomic hydrogen being located at the top of the atmosphere on the sun-lit side of the planet on the southern hemisphere. In addition there are a number of temporally persistent features in the intensity distribution, indicating a complex hydrogen energy distribution. The emission from OI 1304A˚ is generally distributed as a broad torus centered around ˜4RS although the position of the peak intensity can vary by as much as ±1RS. There is significant intensity present out to ±10RS. HST observations of hydroxyl (OH) are re-analyzed and display a distribution half as broad as that of oxygen, also centered at 4RS. The observed atomic oxygen distribution requires a sourcing of 1.3×1028atomss-1 against loss due to charge capture with the plasma. Using the ion partitioning of Schippers et al. [2008. Multi-instrument analysis of electron populations in Saturn

  16. Effects of Induced Sputtering on delta (13) C and AR in the Martian Atmosphere

    NASA Astrophysics Data System (ADS)

    Kass, D. M.; Yung, Y. L.

    1996-09-01

    Given the possibility of life having developed on Mars, it becomes important to know the environment that it evolved in. There is geomorphological evidence that the ancient climate was wetter and warmer. This environment was presumably created by a dense CO_2 atmosphere, but it leaves the fundamental question of what happened to the atmosphere. One possibility is that the atmosphere escaped to space. The main method for removing CO_2 is indirect sputtering, a process where the solar wind accelerates O(+) to high energies and then has them impact the upper atmosphere, causing them to eject other particles (see Luhmann and Kozyra, { \\sl JGR}, 1991). The primary constraint on sputtering and its effect on the atmosphere is the isotopic signature. We have updated our Monte-Carlo model for sputtering (Kass and Yung, Science, 1995) with improved cross sections (from Johnson and Liu, Science, in press) and a more realistic handling of the dissociation of CO_2. Using our new model, we find that Mars could have lost as much as a bar of CO_2 in the last 3.5 Gyr. This is sufficient CO_2 to allow a warmer and wetter climate to have existed during the early part of Mars' history. While there are large errors associated with the calculation due to uncertainties in modeling the evolution of the Sun, our modeling indicates (unlike Luhmann et al., \\sl JRL, 1992) that sputtering can play a significant role in the evolution of the Martian atmosphere. Using our new model, we considered the effects of the sputtering on the delta (13) C and (36) Ar /(38) Ar ratio of the Martian atmosphere. Using a simple model combining the effects of sputtering, outgassing (taken from Jakosky et al., \\sl Icarus, 1994), carbonate formation (Stephens, Caltech Thesis, 1995) and polar reservoirs, we find that the model predicts values for the two isotopic systems in agreement with the current measurements for Mars. These two systems were chosen both because they are affected by relatively few processes

  17. NOTE: On the Deuterium Abundance on Mars and Some Related Problems

    NASA Astrophysics Data System (ADS)

    Krasnopolsky, Vladimir

    2000-12-01

    Strong fractionation of deuterium in photolysis of H 2O and above the hygropause reduces the production of HD relative to H 2 on Mars by a factor of 3.7 total. The model by Y. L. Yung et al. (1988, Icarus76, 146-159) for deuterium fractionation in chemical reactions on Mars corrected for this factor results in (HD/H 2)/(HDO/H 2O)=0.43. This value may fit the deuterium abundance observed by V. A. Krasnopolsky et al. (1998, Science 280, 1576-1580) if the eddy diffusion coefficient does not depend on solar activity: K=1.4×10 13n-1/2 cm 2 s -1 (model 2). The Mariner 9 observations show very low variability of atomic oxygen at the 1.2 n bar pressure level (h˜125 km) with solar activity. This requires eddy diffusion to be proportional to the solar activity index F10.7: K=( F10.7 cm/30)×10 13n-1/2 cm 2 s -1 (model 1). The fractionation factor for escape of hydrogen isotopes is equal to 0.016 and 0.135 for models 1 and 2. These values have been averaged over the solar cycle. The three-reservoir model for hydrogen isotope fractionation suggested by Krasnopolsky et al. (1998) involves a reservoir composed primarily of water ice in the polar caps that isotopically interacts with the atmosphere. Assuming that water ice is half of the total volume of the polar caps and the polar-layered deposits, the total loss of water from Mars is equal to 65 and 120 m for models 1 and 2, respectively. Along with thermal and nonthermal escape, these values may include the loss of water by oxidation of regolith, if the released hydrogen escaped with isotopic fractionation. Although the solar-wind α particles are the main source of He on Mars, capture of the solar-wind H + and D + ions by Mars has a negligible effect on the thermospheric abundances of H and D. Improved observations of minor components in Mars' thermosphere may resolve the problem of eddy diffusion at various solar activity and choosing between the models.

  18. Laboratory Studies of Ammonia Ices Relevant to the Jovian Atmosphere

    NASA Astrophysics Data System (ADS)

    Meharchand, R. T.; Boulter, J. E.; Baer, C. E.; Kalogerakis, K. S.

    2004-12-01

    PHY-0353745. 1. S. K. Atreya and A.-S. Wong, Eos. Trans. 84(46), Fall. Meet. Suppl., Abstract A12A-0072 (2003), and references therein. 2. K. H. Baines, R. W. Carlson, and L. W. Kamp, Icarus 159, 74 (2002). 3. A.-S. Wong, Y. L. Yung, and A. J. Friedson, Geophys. Res. Lett. 30, 1447 (2003).

  19. A physical model of Titan's aerosols.

    PubMed

    Toon, O B; McKay, C P; Griffith, C A; Turco, R P

    1992-01-01

    Microphysical simulations of Titan's stratospheric haze show that aerosol microphysics is linked to organized dynamical processes. The detached haze layer may be a manifestation of 1 cm sec-1 vertical velocities at altitudes above 300 km. The hemispherical asymmetry in the visible albedo may be caused by 0.05 cm sec-1 vertical velocities at altitudes of 150 to 200 km, we predict contrast reversal beyond 0.6 micrometer. Tomasko and Smith's (1982, Icarus 51, 65-95) model, in which a layer of large particles above 220 km altitude is responsible for the high forward scattering observed by Rages and Pollack (1983, Icarus 55, 50-62), is a natural outcome of the detached haze layer being produced by rising motions if aerosol mass production occurs primarily below the detached haze layer. The aerosol's electrical charge is critical for the particle size and optical depth of the haze. The geometric albedo, particularly in the ultraviolet and near infrared, requires that the particle size be near 0.15 micrometer down to altitudes below 100 km, which is consistent with polarization observations (Tomasko and Smith 1982, West and Smith 1991, Icarus 90, 330-333). Above about 400 km and below about 150 km Yung et al.'s (1984, Astrophys. J. Suppl. Ser. 55, 465-506) diffusion coefficients are too small. Dynamical processes control the haze particles below about 150 km. The relatively large eddy diffusion coefficients in the lower stratosphere result in a vertically extensive region with nonuniform mixing ratios of condensable gases, so that most hydrocarbons may condense very near the tropopause rather than tens of kilometers above it. The optical depths of hydrocarbon clouds are probably less than one, requiring that abundant gases such as ethane condense on a subset of the haze particles to create relatively large, rapidly removed particles. The wavelength dependence of the optical radius is calculated for use in analyzing observations of the geometric albedo. The lower

  20. D/H on Mars: Effects of floods, volcanism, impacts, and polar processes

    USGS Publications Warehouse

    Carr, M.H.

    1990-01-01

    Water in the Martian atmosphere is 5.1 times more enriched in deuterium than terrestial water. The enrichment has been previously attributed to either a massive loss of water early in the planet's history or the presence of only a very small reservoir of water that has exchanged with the atmosphere over geologic time. Both these interpretations appear inconsistent with geologic evidence of large floods and sustained volcanism. Large floods are believed to have episodically introduced large amounts of water onto the surface. During a large flood roughly 1017 g of water would almost immediately sublime into the atmospher and be frozen out on polar terrain, to form a new layer several centimeters thick. The long-term effect of a flood would depend on where the water pooled after the flood. If the water pooled at low latitudes, all the water would slowly sublime into the atmosphers and ultimately be frozen out at the poles, thereby adding several meters to the polar deposits for each flood. If the water pooled at high latitude, it would form a permanent ice deposit, largely isolated from further interchange with the atmosphere. Volcanism has also episodically introduced water into the atmosphere. Most of this water has become incorporated into the polar deposits. That released over the last 3.5 Ga could have added a few kilometers to the polar deposits, depending on the amount of dust incorporated along with the ice. Large cometary impacts would have introduced additional large amounts of water into the atmosphere. The long-term evolution of D/H in the atmosphere depends on the rate of exchange of water between the atmosphere and the polar deposits. If exchange is active, then loss rates of hydrogen from the upper atmosphere are substantially higher than those estimated by Y. L. Yung, J. Wen, J. P. Pinto, M. Allen, K. K. Pierce, and S. Paulsen [Icarus 76, 146-159 (1988)]. More plausibly, exchange of water between the atmosphere and the polar deposits is limited, so

  1. Inhibition of Janus kinase signaling during controlled mechanical ventilation prevents ventilation-induced diaphragm dysfunction

    PubMed Central

    Smith, Ira J.; Godinez, Guillermo L.; Singh, Baljit K.; McCaughey, Kelly M.; Alcantara, Raniel R.; Gururaja, Tarikere; Ho, Melissa S.; Nguyen, Henry N.; Friera, Annabelle M.; White, Kathy A.; McLaughlin, John R.; Hansen, Derek; Romero, Jason M.; Baltgalvis, Kristen A.; Claypool, Mark D.; Li, Wei; Lang, Wayne; Yam, George C.; Gelman, Marina S.; Ding, Rongxian; Yung, Stephanie L.; Creger, Daniel P.; Chen, Yan; Singh, Rajinder; Smuder, Ashley J.; Wiggs, Michael P.; Kwon, Oh-Sung; Sollanek, Kurt J.; Powers, Scott K.; Masuda, Esteban S.; Taylor, Vanessa C.; Payan, Donald G.; Kinoshita, Taisei; Kinsella, Todd M.

    2014-01-01

    Controlled mechanical ventilation (CMV) is associated with the development of diaphragm atrophy and contractile dysfunction, and respiratory muscle weakness is thought to contribute significantly to delayed weaning of patients. Therefore, therapeutic strategies for preventing these processes may have clinical benefit. The aim of the current study was to investigate the role of the Janus kinase (JAK)/signal transducer and activator of transcription 3 (STAT3) signaling pathway in CMV-mediated diaphragm wasting and weakness in rats. CMV-induced diaphragm atrophy and contractile dysfunction coincided with marked increases in STAT3 phosphorylation on both tyrosine 705 (Tyr705) and serine 727 (Ser727). STAT3 activation was accompanied by its translocation into mitochondria within diaphragm muscle and mitochondrial dysfunction. Inhibition of JAK signaling during CMV prevented phosphorylation of both target sites on STAT3, eliminated the accumulation of phosphorylated STAT3 within the mitochondria, and reversed the pathologic alterations in mitochondrial function, reduced oxidative stress in the diaphragm, and maintained normal diaphragm contractility. In addition, JAK inhibition during CMV blunted the activation of key proteolytic pathways in the diaphragm, as well as diaphragm atrophy. These findings implicate JAK/STAT3 signaling in the development of diaphragm muscle atrophy and dysfunction during CMV and suggest that the delayed extubation times associated with CMV can be prevented by inhibition of Janus kinase signaling.—Smith, I. J., Godinez, G. L., Singh, B. K., McCaughey, K. M., Alcantara, R. R., Gururaja, T., Ho, M. S., Nguyen, H. N., Friera, A. M., White, K. A., McLaughlin, J. R., Hansen, D., Romero, J. M., Baltgalvis, K. A., Claypool, M. D., Li, W., Lang, W., Yam, G. C., Gelman, M. S., Ding, R., Yung, S. L., Creger, D. P., Chen, Y., Singh, R., Smuder, A. J., Wiggs, M. P., Kwon, O.-S., Sollanek, K. J., Powers, S. K., Masuda, E. S., Taylor, V. C., Payan, D. G

  2. Inhibition of Janus kinase signaling during controlled mechanical ventilation prevents ventilation-induced diaphragm dysfunction.

    PubMed

    Smith, Ira J; Godinez, Guillermo L; Singh, Baljit K; McCaughey, Kelly M; Alcantara, Raniel R; Gururaja, Tarikere; Ho, Melissa S; Nguyen, Henry N; Friera, Annabelle M; White, Kathy A; McLaughlin, John R; Hansen, Derek; Romero, Jason M; Baltgalvis, Kristen A; Claypool, Mark D; Li, Wei; Lang, Wayne; Yam, George C; Gelman, Marina S; Ding, Rongxian; Yung, Stephanie L; Creger, Daniel P; Chen, Yan; Singh, Rajinder; Smuder, Ashley J; Wiggs, Michael P; Kwon, Oh-Sung; Sollanek, Kurt J; Powers, Scott K; Masuda, Esteban S; Taylor, Vanessa C; Payan, Donald G; Kinoshita, Taisei; Kinsella, Todd M

    2014-07-01

    Controlled mechanical ventilation (CMV) is associated with the development of diaphragm atrophy and contractile dysfunction, and respiratory muscle weakness is thought to contribute significantly to delayed weaning of patients. Therefore, therapeutic strategies for preventing these processes may have clinical benefit. The aim of the current study was to investigate the role of the Janus kinase (JAK)/signal transducer and activator of transcription 3 (STAT3) signaling pathway in CMV-mediated diaphragm wasting and weakness in rats. CMV-induced diaphragm atrophy and contractile dysfunction coincided with marked increases in STAT3 phosphorylation on both tyrosine 705 (Tyr705) and serine 727 (Ser727). STAT3 activation was accompanied by its translocation into mitochondria within diaphragm muscle and mitochondrial dysfunction. Inhibition of JAK signaling during CMV prevented phosphorylation of both target sites on STAT3, eliminated the accumulation of phosphorylated STAT3 within the mitochondria, and reversed the pathologic alterations in mitochondrial function, reduced oxidative stress in the diaphragm, and maintained normal diaphragm contractility. In addition, JAK inhibition during CMV blunted the activation of key proteolytic pathways in the diaphragm, as well as diaphragm atrophy. These findings implicate JAK/STAT3 signaling in the development of diaphragm muscle atrophy and dysfunction during CMV and suggest that the delayed extubation times associated with CMV can be prevented by inhibition of Janus kinase signaling.-Smith, I. J., Godinez, G. L., Singh, B. K., McCaughey, K. M., Alcantara, R. R., Gururaja, T., Ho, M. S., Nguyen, H. N., Friera, A. M., White, K. A., McLaughlin, J. R., Hansen, D., Romero, J. M., Baltgalvis, K. A., Claypool, M. D., Li, W., Lang, W., Yam, G. C., Gelman, M. S., Ding, R., Yung, S. L., Creger, D. P., Chen, Y., Singh, R., Smuder, A. J., Wiggs, M. P., Kwon, O.-S., Sollanek, K. J., Powers, S. K., Masuda, E. S., Taylor, V. C., Payan, D. G

  3. Vertical profile of H 2SO 4 vapor at 70-110 km on Venus and some related problems

    NASA Astrophysics Data System (ADS)

    Krasnopolsky, Vladimir A.

    2011-09-01

    The vertical profile of H 2SO 4 vapor is calculated using current atmospheric and thermodynamic data. The atmospheric data include the H 2O profiles observed at 70-112 km by the SOIR solar occultations, the SPICAV-UV profiles of the haze extinction at 220 nm, the VeRa temperature profiles, and a typical profile of eddy diffusion. The thermodynamic data are the saturated vapor pressures of H 2O and H 2SO 4 and chemical potentials of these species in sulfuric acid solutions. The calculated concentration of sulfuric acid in the cloud droplets varies from 85% at 70 km to a minimum of 70% at 90 km and then gradually increasing to 90-100% at 110 km. The H 2SO 4 vapor mixing ratio is ˜10 -12 at 70 and 110 km with a deep minimum of 3 × 10 -18 at 88 km. The H 2O-H 2SO 4 system matches the local thermodynamic equilibrium conditions up to 87 km. The column photolysis rate of H 2SO 4 is 1.6 × 10 5 cm -2 s -1 at 70 km and 23 cm -2 s -1 at 90 km. The calculated abundance of H 2SO 4 vapor at 90-110 km and its photolysis rate are smaller than those presented in the recent model by Zhang et al. (Zhang, X., Liang, M.C., Montmessin, F., Bertaux, J.L., Parkinson, C., Yung, Y.L. [2010]. Nat. Geosci. 3, 834-837) by factors of 10 6 and 10 9, respectively. Assumptions of 100% sulfuric acid, local thermodynamic equilibrium, too warm atmosphere, supersaturation of H 2SO 4 (impossible for a source of SO X), and cross sections for H 2SO 4·H 2O (impossible above the pure H 2SO 4) are the main reasons of this huge difference. Significant differences and contradictions between the SPICAV-UV, SOIR, and ground-based submillimeter observations of SO X at 70-110 km are briefly discussed and some weaknesses are outlined. The possible source of high altitude SO X on Venus remains unclear and probably does not exist.

  4. Phase diagram and density of fluids in the water-methanol system: experiments and implications for the crystallization and dynamics of subsurface oceans in icy moons

    NASA Astrophysics Data System (ADS)

    Yao, C.; Mantegazzi, D.; Deschamps, F.; Sanchez-Valle, C.

    2013-12-01

    : Deschamps, F., Mousis, O., Sanchez-Valle, C., and Lunine, J.I., Astrophys. J., 2010. Hodyss, R., Parkinson, C.D. Johnson, V.D., Stern, J.V., Goguen, J.D, Yung, Y.L., and Kanik, I., Geophys. Res. Lett., 1992. Miller, G.A., and Carpenter, D.A., J. Chem. Eng. Data, 1964. Vuillard, G., and Sanchez, M., Bull. Soc. Chim. France, 1961.

  5. The Sensitivity of Venus' Oxygen Budget to Venus' Mesospheric Temperature

    NASA Astrophysics Data System (ADS)

    Jessup, K.; Mills, F.; Yung, Y.; Allen, M.

    2009-05-01

    The dominant chemical cycle in Venus' mesosphere above the clouds (70-110 km altitude) is the CO2 cycle. The primary steps of this cycle are photodissociation of CO2 to produce CO and O on the day side, transport of CO and O from the day side to the night side, formation of O2 on the day and night sides, and production of CO2 from CO and O2. Many photochemical models have attempted to identify the mechanisms by which CO2 is produced, but none has satisfactorily reproduced the observational upper limit on the O2 abundance (Trauger and Lunine 1983, Krasnopolsky 2006). In these models (Yung and DeMore 1982, Krasnopolsky and Parshev 1983, Pernice et al 2004) the assumed mesospheric vertical pressure and temperature profiles were derived from Pioneer Venus data. However, recent SPICAV observations (Bertaux et al. 2007) indicate mesospheric temperatures at 110 km may be up to 50 K warmer than the standard values adopted from the Pioneer Venus data. The CO2 cross section is sensitive to temperature, so an increase in temperature in the upper part of the mesosphere will increase photodissociation in the upper part of the mesosphere and decrease photodissociation at lower altitudes. These changes should, in turn, affect the abundances and vertical profiles of CO, O2 and O. We have developed a simplified version of the Caltech/JPL photochemical model (Allen et al. 1981) which limits the mesospheric chemistry solely to carbon and oxygen species. Using temperature dependent CO2 cross-section data in this model, we will investigate the impact of temperature on the vertical profile of CO2 photodissociation and the calculated abundances of CO, O, and O2. Two sets of temperature dependent CO2 cross section data a) Lewis and Carver 1983, and b) Yoshino et al. 1996; Parkinson et al 2003 will be utilized in this study. The sensitivity of the model results to differences between the two sets of cross section measurements will be quantified.

  6. Variations of carbon monoxide in the martian lower atmosphere

    NASA Astrophysics Data System (ADS)

    Krasnopolsky, Vladimir A.

    2015-06-01

    Our observations of variations of CO on Mars by means of the ground-based spatially-resolved high-resolution spectroscopy (Krasnopolsky, V.A. [2003]. J. Geophys. Res. 108(E2), 5010; Krasnopolsky, V.A. [2007]. Icarus 190, 93-102) have been significantly improved using the 13CO lines near 4148 cm-1 and the CO2 lines near 4570 cm-1. These lines are of optimal strength, of low sensitivity to variations of temperature, and covered by the ATMOS solar spectrum that makes it possible to use the synthetic spectra technique for retrieval of CO and CO2 to get CO mixing ratios. The CO2 line strengths from Toth et al. (2008) were also essential to improve accuracy of the results. The 13CO/CO ratio of 1.023 times the terrestrial carbon isotope ratio was calculated using the known 13CO2/CO2 = 1.046 in the martian atmosphere (Webster, C.R., et al. [2013]. Science 341, 260-263), the photo-induced isotope fractionation (Miller, C.E., Yung, Y.L. [2000]. J. Geophys. Res. 105(D23), 29039-29051) in the CO2 photolysis, and isotope fractionation in the reaction between CO and OH (Feilberg, K.L., Johnson, M.S., Nielsen, C.J. [2005]. Phys. Chem. Chem. Phys. 7, 2318-2323). The observations were conducted at LS = 60°, 89°, 110°, and 145° and extend over the maximum of CO in the southern hemisphere during the northern summer. The CO mixing ratio was observed to be constant over the 55°S-90°N latitudinal range to within 7%, for each observed LS period. Therefore our observations show that the enrichment of incondensable gases by condensation of CO2 in the southern polar regions does not significantly extend to the middle and low latitudes. This behavior agrees with the Mars Climate Database (Lefevre, F., Forget, F. [2009]. Nature 460, 720-722), whereas most other observations exhibit much larger latitudinal gradients and seasonal variations. Our measurements do not show the CO depletion at high northern latitudes predicted by MCD of ∼20% at LS≈ 60-150° and observed as much stronger

  7. Swell effect correction for the high-resolution marine seismic data acquired using an airgun and an 8-channel streamer cable

    NASA Astrophysics Data System (ADS)

    Lee, Ho-Young; Koo, Nam-Hyung; Kim, Wonsik; Kim, Byoung-yeop; Cheong, Snons; Kim, Young-Jun

    2015-04-01

    Energy Technology Innovation (ETI) Project of the Korea Institute of Energy Technology Evaluation and Planning (KETEP), funded by the Ministry of Trade, Industry and Energy (MOTIE). The authors thank the officers and crew of the R/V Tamhae II for their efforts in the field survey.

  8. Strong Local-Nonlocal Coupling for Integrated Fracture Modeling

    SciTech Connect

    Littlewood, David John; Silling, Stewart A.; Mitchell, John A.; Seleson, Pablo D.; Bond, Stephen D.; Parks, Michael L.; Turner, Daniel Z.; Burnett, Damon J.; Ostien, Jakob; Gunzburger, Max

    2015-09-01

    dramatically improved consistency at domain boundaries, and an enhancement to the meshfree discretization applied to peridynamic models that removes irregularities at the limit of the nonlocal length scale and dramatically improves conver- gence behavior. Finally, a novel approach for modeling ductile failure has been developed, moti- vated by the desire to apply coupled local-nonlocal models to a wide variety of materials, including ductile metals, which have received minimal attention in the peridynamic literature. Software im- plementation of the partial-stress coupling strategy, the position-aware peridynamic constitutive models, and the strategies for improving the convergence behavior of peridynamic models was completed within the Peridigm and Albany codes, developed at Sandia National Laboratories and made publicly available under the open-source 3-clause BSD license.

  9. Presolar Graphite from AGB Stars: Microstructure and s-Process Enrichment

    NASA Astrophysics Data System (ADS)

    Croat, Thomas K.; Stadermann, Frank J.; Bernatowicz, Thomas J.

    2005-10-01

    Correlated transmission electron microscopy and secondary ion mass spectrometry with submicron spatial resolution (NanoSIMS) investigations of the same presolar graphites spherules from the Murchison meteorite were conducted, to link the isotopic anomalies with the mineralogy and chemical composition of the graphite and its internal grains. Refractory carbide grains (especially titanium carbide) are commonly found within the graphite spherules, and most have significant concentrations of Zr, Mo, and Ru in solid solution, elements primarily produced by s-process nucleosynthesis. The effect of chemical fractionation on the Mo/Ti ratio in these carbides is limited, and therefore from this ratio one can infer the degree of s-process enrichment in the gas from which the graphite condensed. The resulting s-process enrichments within carbides are large (~200 times solar on average), showing that most of the carbide-containing graphites formed in the mass outflows of asymptotic giant branch (AGB) stars. NanoSIMS measurements of these graphites also show isotopically light carbon (mostly in the 100<12C/13C<400 range). The enrichment of these presolar graphites in both s-process elements and 12C considerably exceeds that astronomically observed around carbon stars. However, a natural correlation exists between 12C and s-process elements, as both form in the He intershell region of thermally pulsing AGB stars and are dredged up together to the surface. Their observation together suggests that these graphites may have formed in chemically and isotopically inhomogeneous regions around AGB stars, such as high-density knots or jets. As shown in the companion paper, a gas density exceeding that expected for smooth mass outflows is required for graphite of the observed size to condense at all in circumstellar environments, and the spatially inhomogeneous, high-density regions from which they condense may also be incompletely mixed with the surrounding gas. We have greatly expanded

  10. SU-E-I-64: Transverse Relaxation Time in Methylene Protons of Non-Alcoholic Fatty Liver Disease Rats

    SciTech Connect

    Song, K-H; Lee, D-W; Choe, B-Y

    2015-06-15

    Purpose: The aim of this study was to evaluate transverse relaxation time of methylene resonance compared to other lipid resonances. Methods: The examinations were performed using a 3.0 T scanner with a point — resolved spectroscopy (PRESS) sequence. Lipid relaxation time in a lipid phantom filled with canola oil was estimated considering repetition time (TR) as 6000 msec and echo time (TE) as 40 — 550 msec. For in vivo proton magnetic resonance spectroscopy ({sup 1}H — MRS), eight male Sprague — Dawley rats were given free access to a normal - chow (NC) and eight other male Sprague-Dawley rats were given free access to a high — fat (HF) diet. Both groups drank water ad libitum. T{sub 2} measurements in the rats’ livers were conducted at a fixed TR of 6000 msec and TE of 40 – 220 msec. Exponential curve fitting quality was calculated through the coefficients of determination (R{sup 2}). Results: A chemical analysis of phantom and liver was not performed but a T{sub 2} decay curve was acquired. The T{sub 2} relaxation time of methylene resonance was estimated as follows: NC rats, 37.07 ± 4.32 msec; HF rats, 31.43 ± 1.81 msec (p < 0.05). The extrapolated M0 values were higher in HF rats than in NC rats (p < 0.005). Conclusion: This study of {sup 1}H-MRS led to sufficient spectral resolution and signal — to — noise ratio differences to characterize all observable resonances for yielding T{sub 2} relaxation times of methylene resonance. {sup 1}H — MRS relaxation times may be useful for quantitative characterization of various liver diseases, including fatty liver disease. This study was supported by grant (2012-007883 and 2014R1A2A1A10050270) from the Mid-career Researcher Program through the NRF funded by Ministry of Science. In addition, this study was supported by the Industrial R&D of MOTIE/KEIT (10048997, Development of the core technology for integrated therapy devices based on real-time MRI-guided tumor tracking)

  11. SU-E-I-60: Quality Assurance Testing Methods and Customized Phantom for Magnetic Resonance Imaging and Spectroscopy

    SciTech Connect

    Song, K-H; Lee, D-W; Choe, B-Y

    2015-06-15

    factors simultaneously. This study was supported by grant (2012-007883 and 2014R1A2A1A10050270) from the Mid-career Researcher Program through the NRF funded by Ministry of Science. In addition, this study was supported by the Industrial R&D of MOTIE/KEIT (10048997, Development of the core technology for integrated therapy devices based on real-time MRI-guided tumor tracking)

  12. SU-C-207-01: Four-Dimensional Inverse Geometry Computed Tomography: Concept and Its Validation

    SciTech Connect

    Kim, K; Kim, D; Kim, T; Kang, S; Cho, M; Shin, D; Suh, T

    2015-06-15

    Purpose: In past few years, the inverse geometry computed tomography (IGCT) system has been developed to overcome shortcomings of a conventional computed tomography (CT) system such as scatter problem induced from large detector size and cone-beam artifact. In this study, we intend to present a concept of a four-dimensional (4D) IGCT system that has positive aspects above all with temporal resolution for dynamic studies and reduction of motion artifact. Methods: Contrary to conventional CT system, projection data at a certain angle in IGCT was a group of fractionated narrow cone-beam projection data, projection group (PG), acquired from multi-source array which have extremely short time gap of sequential operation between each of sources. At this, for 4D IGCT imaging, time-related data acquisition parameters were determined by combining multi-source scanning time for collecting one PG with conventional 4D CBCT data acquisition sequence. Over a gantry rotation, acquired PGs from multi-source array were tagged time and angle for 4D image reconstruction. Acquired PGs were sorted into 10 phase and image reconstructions were independently performed at each phase. Image reconstruction algorithm based upon filtered-backprojection was used in this study. Results: The 4D IGCT had uniform image without cone-beam artifact on the contrary to 4D CBCT image. In addition, the 4D IGCT images of each phase had no significant artifact induced from motion compared with 3D CT. Conclusion: The 4D IGCT image seems to give relatively accurate dynamic information of patient anatomy based on the results were more endurable than 3D CT about motion artifact. From this, it will be useful for dynamic study and respiratory-correlated radiation therapy. This work was supported by the Industrial R&D program of MOTIE/KEIT [10048997, Development of the core technology for integrated therapy devices based on real-time MRI guided tumor tracking] and the Mid-career Researcher Program (2014R1A2A1A

  13. SU-E-I-92: Is Photon Starvation Preventing Metal Artifact Reduction Algorithm From Working in KVCT?

    SciTech Connect

    Paudel, M; MacKenzie, M; Fallone, B; Rathee, S

    2014-06-01

    hip implants. Moti Raj Paudel is supported by the Vanier Canada Graduate Scholarship, the Endowed Graduate Scholarship in Oncology and the Dissertation Fellowship at the University of Alberta. The authors acknowledge the CIHR operating grant number MOP 53254.

  14. The potential impact of hydrogen energy use on the atmosphere

    NASA Astrophysics Data System (ADS)

    van Ruijven, B. J.; Lamarque, J. F.; van Vuuren, D. P.; Kram, T.; Eerens, H.

    2009-04-01

    ., Hess, P. G., Collins, W. D., Emmons, L. K., Ginoux, P., Luo, C. and Tie, X. X. (2005). "Response of a coupled chemistry-climate model to changes in aerosol emissions: Global impact on the hydrological cycle and the tropospheric burdens of OH, ozone and NOx." Geophysical Research Letters 32(16). Lamarque, J.-F., Kinnison, D. E., Hess, P. G. and Vitt, F. (2008). "Simulated lower stratospheric trends between 1970 and 2005: identifying the role of climate and composition changes." Journal of Geophysical Research 113(D12301). Price, H., Jaegle, L., Rice, A., Quay, P., Novelli, P. C. and Gammon, R. (2007). "Global budget of molecular hydrogen and its deuterium content: constraints from ground station, cruise, and aircraft observations." Journal of Geophysical Research 112(D22108). Sanderson, M. G., Collins, W. J., Derwent, R. G. and Johnson, C. E. (2003). "Simulation of Global Hydrogen Levels Using a Lagrangian Three-Dimensional Model." Journal of Atmospheric Chemistry 46(1): 15-28. Schultz, M. G., Diehl, T., Brasseur, G. P. and Zittel, W. (2003). "Air Pollution and Climate-Forcing Impacts of a Global Hydrogen Economy." Science 302(5645): 624-627. Tromp, T. K., Shia, R. L., Allen, M., Eiler, J. M. and Yung, Y. L. (2003). "Potential environmental impact of a hydrogen economy on the stratosphere." Science 300(5626): 1740-1742. van Ruijven, B., Hari, L., van Vuuren, D. P. and de Vries, B. (2008). "The potential role of hydrogen in India and Western Europe." Energy Policy 36(5): 1649-1665. van Ruijven, B., van Vuuren, D. P. and de Vries, B. (2007). "The potential role of hydrogen in energy systems with and without climate policy." International Journal of Hydrogen Energy 32(12): 1655-1672. van Vuuren, D. P. (2007). Energy systems and climate policy. Dept. of Science, Technology and Society, Faculty of Science. Utrecht, Utrecht University: 326.

  15. Accidental Predissociation: A Special Case of Photo-Induced Isotope Fractionation Effect and Possible Occurrence in Nature

    NASA Astrophysics Data System (ADS)

    Chakraborty, S.; Thiemens, M. H.

    2009-12-01

    light of these data, anomalous isotopic fractionations associated with accidental predissociation will be discussed for the CO and N2. These fractionations are important as VUV-photodissociation of CO and N2 have been invoked in solar nebula (self-shielding, (9-10)) to explain the observed iso-topic signatures in different solar system objects neglecting these isotope effects during photo-dissociation. References: 1. Y. L. Yung, C. E. Miller, Science 278, 1778 (1997). 2. S. Chakraborty, S. K. Bhattacharya, J. Chem. Phys. 118, 2164 (2003). 3. H. Lefebvre-Brion, R. W. Field, The Spectra and Dynamics of Diatomic Molecules. (Elsevier Academic Press, 2004). 4. A. J. Lorquet, J. C. Lorquet, Chem. Phys. Lett. 26, 138 (1974). 5. W. Ubachs, I. Velchev, P. Cacciani, J. Chem. Phys. 113, 547 (2000). 6. H. Lefebvre-Brion, R. Colin, J. Mol. Spectrosc. 65, 33 (1977). 7. S. Chakraborty, M. Ahmed, T. L. Jackson, M. H. Thiemens, Science 321, 1328 (2008). 8. S. Chakraborty, M. Ahmed, T. L. Jackson, M. H. Thiemens, Science 324, 4 (2009). 9. R. N. Clayton, Nature 415, 860 (2002). 10. J. R. Lyons, E. D. Young, Nature 435, 317 (2005).

  16. Wave propagation, scattering and emission in complex media

    NASA Astrophysics Data System (ADS)

    Jin, Ya-Qiu

    propagation in forested environment / K. Sarabandi, I. Koh. Angle-of-arrival fluctuations due to meteorological conditions in the diffraction zone of C-band radio waves, propagated over the ground surface / T. A. Tyufilina, A. A. Meschelyakov, M. V. Krutikov. Simulating radio channel statistics using ray based prediction codes / H. L. Bertoni. Measurement and simulation of ultra wideband antenna elements / W. Sörgel, W. Wiesbeck. The experimental investigation of a ground-placed radio complex synchronization system / V. P. Denisov ... [et al.] -- VII. Computational electromagnetics. Analysis of 3-D electromagnetic wave scattering with the Krylov subspace FFT iterative methods / R. S. Chen ... [et al.]. Sparse approximate inverse preconditioned iterative algorithm with block toeplitz matrix for fast analysis of microstrip circuits / L. Mo, R. S. Chen, E. K. N. Yung. An Efficient modified interpolation technique for the translation operators in MLFMA / J. Hu, Z. P. Nie, G. X. Zou. Efficient solution of 3-D vector electromagnetic scattering by CG-MLFMA with partly approximate iteration / J. Hu, Z. P. Nie. The effective constitution at interface of different media / L. G. Zheng, W. X. Zhang. Novel basis functions for quadratic hexahedral edge element / P. Liu ... [et al.]. A higher order FDTD method for EM wave propagation in collision plasmas / S. B. Liu, J. J. Mo, N. C. Yuan. Attenuation of electric field eradiated by underground source / J. P. Dong, Y. G. Gao.

  17. PREFACE: XIV International Conference on Calorimetry in High Energy Physics

    NASA Astrophysics Data System (ADS)

    Wang, Yifang

    2011-03-01

    (Texas Tech University), Weidong Li (IHEP) 3) Readout techniques - Gerald Eigen (University of Bergen), Zheng Wang (IHEP) 4) Operating calorimeters and calibration - Marat Gataullin (CERN), Francesco Lanni (BNL) 5) Future calorimetry - Tohru Takeshita (Shinshu University), Lei Xia (Argonne National Laboratory) 6) Astrophysics and neutrino calorimetry - Giuliana Fiorillo (INFN), Hiro Tajima (SLAC) List of Participants AKCHURIN, NuralTexas Tech University AN, ZhenghuaIHEP AUFFRAY, EtiennetteCERN BANFI, DaniloUniversità degli Studi di Milano, INFN BASHARINA-FRESHVILLE, AnastasiaUniversity College London BEAUCHEMIN, Pierre-HuguesUniversity of Oxford BENAGLIA, Andrea DavideUniversity of Milano - Bicocca and INFN BIAN, JianminIHEP BIINO, CristinaINFN BILKI, BurakUniversity of Iowa BLAHA, JanLAPP BOUDRY, VincentLLR / CNRS-IN2P3 CAI, XiaoIHEP CAPONE, AntonioPhysics Department University "La Sapienza" and INFN CAVALLARI, FrancescaCERN and INFN Rome CECCHI, ClaudiaUniversity di Perugia e INFN CHANG, JinfanIHEP CHEN, HuchengBrookhaven National Laboratory CHILDERS, TaylorUniversität Heidelberg - Kirchhoff-Institut für Physik DAO, ValerioGeneva University - DPNC DE LA TAILLE, ChristopheIN2P3/OMEGA-LAL DIEMOZ, MarcellaINFN Roma DOTTI, AndreaCERN EIGEN, GeraldUniversity of Bergen EPIFANOV, DenisBudker Institute of Nuclear Physics FAIVRE, JulienLPSC Grenoble France FANG, JianIHEP FANG, ShuangshiIHEP FANTONI, AlessandraINFN - LNF FERRI, FedericoCEA/Saclay Irfu/SPP FERRONI, FernandoSapienza University & INFN Roma FISK, Henry EugeneFermilab GABALDON, CarolinaCERN GARUTTI, ErikaDESY GAUDIO, GabriellaIstituto Nazionale di Fisica Nucleare - Sezione di Pavia GILLBERG, DagCarleton University GIOVANNINI, PaolaMax-Planck-Institut für Physik GLAZOV, AlexanderDESY GRACHOV, OlegUniversity of Kansas HAPPACHER, FabioINFN HE, MiaoIHEP HORI, YasutoUniversity of Tokyo, CNS HU, TaoIHEP HULTH, Per-OlofStockholm University JUN, Soon YungCarnegie Mellon University JURK, StefanISEG Spezialelektronik gmb

  18. Poster Session B

    PubMed Central

    2014-01-01

    that the most significantly enriched molecular function categories for SSG-modified proteins were free radical scavenging and cell death/survival. This preliminary result provides some insights on protein SSG modification as a potential regulatory mechanism of nanomaterial-induced oxidative stress. B.11 O-GlcNAc Regulates SOX2 Activity in Embryonic Stem Cells by Altering Protein-SOX2 Interactions Samuel Myers1, Sailaja Pedadda, Tara Freidrich, Sean Thomas, Gregor Krings, Michael Lopez, Marena Trinidad, Barbara Panning, Al Burlingame University of California, San Francisco, CA, USA SOX2 is a versatile transcription factor that maintains embryonic stem cell (ESC) pluripotency and self-renewal, and is important for proper lineage specification and adult stem cell maintenance. This versatility is likely due to post-translational modifications (PTMs) as SOX2 has been reported to be modified by numerous chemical moieties in a variety of cell types. One such PTM is O-GlcNAc, the dynamic and regulatory glycosylation of intracellular proteins. Global O-GlcNAc is essential for ESC self-renewal though the function of SOX2 O-GlcNAcylation in ESC is not understood. Here, we show that SOX2 is O-GlcNAc modified in the transactivation domain and alterations of self-renewing signals induce changes in SOX2 O-GlcNAc stoichiometry. Replacement of wild-type SOX2 with an O-GlcNAc-deficient mutant SOX2 in ESCs increases the pluripotency transcriptional network while down-regulating genes involved in differentiation. Analysis of SOX2-interacting proteins from ESCs revealed that the WT and mutant SOX2 interact with distinct subsets of transcriptional regulatory complexes. Thus, SOX2 O-GlcNAcylation modulates the transcriptional landscape of ESCs by modulating SOX2 activity and interactions with epigenetic regulatory complexes. B.12 Development of Multiplexed Assays for Oral Cancer Biomarker Verification by Peptide Immunoaffinity Enrichment and Targeted Mass Spectrometry Yung-Chin Hsiao1, Lang