Decrease in neuronal nicotinic acetylcholine receptor subunit and PSD-93 transcript levels in the male mouse MPG after cavernous nerve injury or explant culture.

PubMed

Girard, Beatrice M; Merriam, Laura A; Tompkins, John D; Vizzard, Margaret A; Parsons, Rodney L

2013-11-15

Quantitative real-time PCR was used to test whether cavernous nerve injury leads to a decrease in major pelvic ganglia (MPG) neuronal nicotinic ACh receptor (nAChR) subunit and postsynaptic density (PSD)-93 transcript levels. Subunits α3, β4, and α7, commonly expressed in the MPG, were selected for analysis. After 72 h in explant culture, MPG transcript levels for α3, β4, α7, and PSD-93 were significantly depressed. Three days after cavernous nerve axotomy or crush in vivo, transcript levels for α3, β4, and PSD-93, but not for α7, were significantly depressed. Three days after dissection of the cavernous nerve free of underlying tissue and application of a 5-mm lateral stretch (manipulation), transcript levels for α3 and PSD-93 were also significantly decreased. Seven days after all three surgical procedures, α3 transcript levels remained depressed, but PSD-93 transcript levels were still decreased only after axotomy or nerve crush. At 30 days postsurgery, transcript levels for the nAChR subunits and PSD-93 had recovered. ACh-induced currents were significantly smaller in MPG neurons dissociated from 3-day explant cultured ganglia than from those recorded in neurons dissociated from acutely isolated ganglia; this observation provides direct evidence showing that a decrease in nAChR function was coincident with a decrease in nAChR subunit transcript levels. We conclude that a downregulation of nAChR subunit and PSD-93 expression after cavernous nerve injury, or even manipulation, could interrupt synaptic transmission within the MPG and thus contribute to the loss of neural control of urogenital organs after pelvic surgeries.

Distribution of PLGA-modified nanoparticles in 3D cell culture models of hypo-vascularized tumor tissue.

PubMed

Sims, Lee B; Huss, Maya K; Frieboes, Hermann B; Steinbach-Rankins, Jill M

2017-10-05

Advanced stage cancer treatments are often invasive and painful-typically comprised of surgery, chemotherapy, and/or radiation treatment. Low transport efficiency during systemic chemotherapy may require high chemotherapeutic doses to effectively target cancerous tissue, resulting in systemic toxicity. Nanotherapeutic platforms have been proposed as an alternative to more safely and effectively deliver therapeutic agents directly to tumor sites. However, cellular internalization and tumor penetration are often diametrically opposed, with limited access to tumor regions distal from vasculature, due to irregular tissue morphologies. To address these transport challenges, nanoparticles (NPs) are often surface-modified with ligands to enhance transport and longevity after localized or systemic administration. Here, we evaluate stealth polyethylene-glycol (PEG), cell-penetrating (MPG), and CPP-stealth (MPG/PEG) poly(lactic-co-glycolic-acid) (PLGA) NP co-treatment strategies in 3D cell culture representing hypo-vascularized tissue. Smaller, more regularly-shaped avascular tissue was generated using the hanging drop (HD) method, while more irregularly-shaped masses were formed with the liquid overlay (LO) technique. To compare NP distribution differences within the same type of tissue as a function of different cancer types, we selected HeLa, cervical epithelial adenocarcinoma cells; CaSki, cervical epidermoid carcinoma cells; and SiHa, grade II cervical squamous cell carcinoma cells. In HD tumors, enhanced distribution relative to unmodified NPs was measured for MPG and PEG NPs in HeLa, and for all modified NPs in SiHa spheroids. In LO tumors, the greatest distribution was observed for MPG and MPG/PEG NPs in HeLa, and for PEG and MPG/PEG NPs in SiHa spheroids. Pre-clinical evaluation of PLGA-modified NP distribution into hypo-vascularized tumor tissue may benefit from considering tissue morphology in addition to cancer type.

N-methylpurine DNA glycosylase and DNA polymerase β modulate BER inhibitor potentiation of glioma cells to temozolomide

PubMed Central

Tang, Jiang-bo; Svilar, David; Trivedi, Ram N.; Wang, Xiao-hong; Goellner, Eva M.; Moore, Briana; Hamilton, Ronald L.; Banze, Lauren A.; Brown, Ashley R.; Sobol, Robert W.

2011-01-01

Temozolomide (TMZ) is the preferred chemotherapeutic agent in the treatment of glioma following surgical resection and/or radiation. Resistance to TMZ is attributed to efficient repair and/or tolerance of TMZ-induced DNA lesions. The majority of the TMZ-induced DNA base adducts are repaired by the base excision repair (BER) pathway and therefore modulation of this pathway can enhance drug sensitivity. N-methylpurine DNA glycosylase (MPG) initiates BER by removing TMZ-induced N3-methyladenine and N7-methylguanine base lesions, leaving abasic sites (AP sites) in DNA for further processing by BER. Using the human glioma cell lines LN428 and T98G, we report here that potentiation of TMZ via BER inhibition [methoxyamine (MX), the PARP inhibitors PJ34 and ABT-888 or depletion (knockdown) of PARG] is greatly enhanced by over-expression of the BER initiating enzyme MPG. We also show that methoxyamine-induced potentiation of TMZ in MPG expressing glioma cells is abrogated by elevated-expression of the rate-limiting BER enzyme DNA polymerase β (Polβ), suggesting that cells proficient for BER readily repair AP sites in the presence of MX. Further, depletion of Polβ increases PARP inhibitor-induced potentiation in the MPG over-expressing glioma cells, suggesting that expression of Polβ modulates the cytotoxic effect of combining increased repair initiation and BER inhibition. This study demonstrates that MPG overexpression, together with inhibition of BER, sensitizes glioma cells to the alkylating agent TMZ in a Polβ-dependent manner, suggesting that the expression level of both MPG and Polβ might be used to predict the effectiveness of MX and PARP-mediated potentiation of TMZ in cancer treatment. PMID:21377995

Effectiveness of Miles-Per-Gallon Meters as a Means to Conserve Gasoline in Automobiles

DOT National Transportation Integrated Search

1976-10-01

This report is an assessment of fuel flow instruments reading directly in miles per gallon (mpg). It describes currently available mpg meters, their installation, utility, and safety and presents an analysis of potential cost savings. It discusses me...

Effects of miles per gallon feedback on fuel efficiency in gas-powered cars.

DOT National Transportation Integrated Search

2009-10-01

This study tested the impact of continuous miles per gallon (MPG) feedback on driving : behavior and fuel efficiency in gas-powered cars. We compared an experimental condition, : where drivers received real-time MPG feedback and a tip sheet, to a con...

Modeling Fuel Efficiency: MPG or GPHM?

ERIC Educational Resources Information Center

Bartkovich, Kevin G.

2013-01-01

The standard for measuring fuel efficiency in the U.S. has been miles per gallon (mpg). However, the Environmental Protection Agency's (EPA) switch in rating fuel efficiency from miles per gallon to gallons per hundred miles with the 2013 model-year cars leads to interesting and relevant mathematics with real-world connections. By modeling…

A Supernova in ZWI:16.7+1.57

NASA Astrophysics Data System (ADS)

Shahbazian, R. K.; Borngen, F.

1984-09-01

A supernova near the galaxy Zw1 16.7+1.57, has been found on the maps of the Palomar Observatory. The eye estimation of photographic and red magnitudes gives: mpg = 18.3, mr = 18.6. The blue colour and the supposed luminosity (Mpg = -17.2) of the object suggest that it is of type II near the maximum.

49 CFR 533.5 - Requirements.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 49 Transportation 6 2014-10-01 2014-10-01 false Requirements. 533.5 Section 533.5 Transportation... (gal/mi) 2012 29.82 22.27 0.0004546 0.014900 2013 30.67 22.74 0.0004546 0.013968 2014 31.38 23.13 0... for the Light Truck Fuel Economy Targets for MYs 2017-2025 Model year Parameters a (mpg) b (mpg) c...

Photodegradation of methyl red under visible light by mesoporous carbon nitride

NASA Astrophysics Data System (ADS)

Hu, Yueyue; Zhang, Min; Xiao, Zaozao; Jiang, Tao; Yan, Bing; Li, Jian

2018-02-01

Mesoporous carbon nitride (mpg-C3N4) with tunable microstructure has been successfully prepared through a simple polymerization reaction of cyanamide by a nano hard-templating approach. The obtained materials have been characterized using X-ray diffraction (XRD), N2 adsorption, and Fourier transform infrared (FT-IR) spectroscopy. The results show that the pore diameter of the mpg-C3N4 materials can be easily tuned from 3.8 to 10.5 nm. The mpg-C3N4 materials are demonstrated to exhibit much higher visible light photocatalytic activity than that of g-C3N4 for the degradation of aqueous methyl red (MR). The high surface areas and large pore volume contributed to the efficient visible light photocatalytic activity.

Theoretical analysis and simulation of the influence of self-bunching effects and longitudinal space charge effects on the propagation of keV electron bunch produced by a novel S-band Micro-Pulse electron Gun

NASA Astrophysics Data System (ADS)

Zhao, Jifei; Lu, Xiangyang; Zhou, Kui; Yang, Ziqin; Yang, Deyu; Luo, Xing; Tan, Weiwei; Yang, Yujia

2016-06-01

As an important electron source, Micro-Pulse electron Gun (MPG) which is qualified for producing high average current, short pulse, low emittance electron bunches steadily holds promise to use as an electron source of Coherent Smith-Purcell Radiation (CSPR), Free Electron Laser (FEL). The stable output of S-band MPG has been achieved in many labs. To establish reliable foundation for the future application of it, the propagation of picosecond electron bunch produced by MPG should be studied in detail. In this article, the MPG which was working on the rising stage of total effective Secondary Electron Yield (SEY) curve was introduced. The self-bunching mechanism was discussed in depth both in the multipacting amplifying state and the steady working state. The bunch length broadening induced by the longitudinal space-charge (SC) effects was investigated by different theoretical models in different regions. The 2D PIC codes MAGIC and beam dynamic codes TraceWin simulations were also performed in the propagation. The result shows an excellent agreement between the simulation and the theoretical analysis for bunch length evolution.

Downscaling remotely sensed imagery using area-to-point cokriging and multiple-point geostatistical simulation

NASA Astrophysics Data System (ADS)

Tang, Yunwei; Atkinson, Peter M.; Zhang, Jingxiong

2015-03-01

A cross-scale data integration method was developed and tested based on the theory of geostatistics and multiple-point geostatistics (MPG). The goal was to downscale remotely sensed images while retaining spatial structure by integrating images at different spatial resolutions. During the process of downscaling, a rich spatial correlation model in the form of a training image was incorporated to facilitate reproduction of similar local patterns in the simulated images. Area-to-point cokriging (ATPCK) was used as locally varying mean (LVM) (i.e., soft data) to deal with the change of support problem (COSP) for cross-scale integration, which MPG cannot achieve alone. Several pairs of spectral bands of remotely sensed images were tested for integration within different cross-scale case studies. The experiment shows that MPG can restore the spatial structure of the image at a fine spatial resolution given the training image and conditioning data. The super-resolution image can be predicted using the proposed method, which cannot be realised using most data integration methods. The results show that ATPCK-MPG approach can achieve greater accuracy than methods which do not account for the change of support issue.

Teaching Mineralogy, Petrology and Geochemistry in the 21st Century: Instructional Resources for Geoscience Faculty

NASA Astrophysics Data System (ADS)

Mogk, D. W.; Beane, R. J.; Whitney, D. L.; Nicolaysen, K. E.; Panero, W. R.; Peck, W. H.

2011-12-01

Mineralogy, petrology and geochemistry (MPG) are pillars of the geoscience curriculum because of their relevance in interpreting Earth history and processes, application to geo-hazards, resources, and environmental issues, and contributions to emerging fields such as geology and human health. To keep faculty current in scientific advances in these fields, and in modern instructional methods, the On the Cutting Edge program convened a workshop at the University of Minnesota in August, 2011. This workshop builds on the previous 15 year's work that has been focused on identifying, aggregating, and developing high-quality collections of teaching activities and related resources, and in building a community of scholars in support of excellence in instruction in MPG courses. The goals of the workshop were to: a) develop an integrated, comprehensive and reviewed curriculum for MPG courses, and to seek ways to make connections with the larger geoscience curriculum; b) to explore emerging topics in MPG such as geobiology and climate change; c) demonstrate effective methods in teaching MPG in the context of Earth system science; d) share effective teaching activities and strategies for the classroom, laboratory and field including advances in pedagogy, assessments and research on learning; e) keep faculty current on recent advances in mineralogy, petrology and geochemistry research and to apply these findings to our teaching; f) explore and utilize current societal and global issues that intersect mineralogy, petrology and geochemistry to heighten the relevancy of course content for students; and h) meet colleagues and foster future teaching and research collaborations. A significant outcome of this workshop is a peer reviewed of collection of 300+ existing teaching activities, and a gap analysis to identify teaching activities needed to make these collections comprehensive and coherent. In addition, a series of thematic collections were developed to assist high priority areas of teaching MPG (e.g. MPG in Introductory Geoscience Courses-Beyond "Rocks in a Box"; thermobarometry programs). All demonstrations and presentations made at the workshop are accessible from the workshop webpage, including a wide variety of active learning exercises and demonstrations of modern computer applications (e.g. SHAPE, ATOMS, CrystalMaker, MELTS, Theriak-Domino, Perplex, TWQ, Google Earth and Gigapans, and PHREEQC). A post-workshop field trip to the Precambrian rocks of northern Minnesota focused on effective teaching and learning in the field. We encourage the geoscience community to use these online resources, and please consider contributing additional teaching activities and resources to these collections.

An Ethical Basis for Autonomous System Deployment

DTIC Science & Technology

2009-09-24

Discussion on Robo -Ethics, Amsterdam, NL, March 2008.GSU Neurophilosophy 20. Brown Bag Lunch Series, "Governing Lethal Behavior: Embedding Ethics in an...5. Implementation of responsibility advisor : An ethical permission responsibility advisor was prototyped and demonstrated in a manner fully...PTF_Interface_Final_Largev3.mpg • Demonstration of the Ethical Responsibility Advisor : http://www.cc.gatech.edu/ai/robot-lab/ethics/res-advisor.mpg

Attenuation of ischemia-reperfusion-induced alterations in intracellular Ca2+ in cardiomyocytes from hearts treated with N-acetylcysteine and N-mercaptopropionylglycine.

PubMed

Saini-Chohan, Harjot K; Dhalla, Naranjan S

2009-12-01

This study was undertaken to test whether Ca(2+)-handling abnormalities in cardiomyocytes after ischemia-reperfusion (I/R) are prevented by antioxidants such as N-acetyl L-cysteine (NAC), which is known to reduce oxidative stress by increasing the glutathione redox status, and N-(2-mercaptopropionyl)-glycine (MPG), which scavenges both peroxynitrite and hydroxyl radicals. For this purpose, isolated rat hearts were subjected to 30 min of global ischemia followed by 30 min of reperfusion, and cardiomyocytes were prepared to monitor changes in the intracellular concentration of free Ca(2+) ([Ca(2+)](i)). Marked depression in the left ventricular developed pressure and elevation in the left ventricular end-diastolic pressure in I/R hearts were attenuated by treatment with NAC or MPG. Cardiomyocytes obtained from I/R hearts showed an increase in the basal level of [Ca(2+)](i) as well as augmentation of the low Na(+)-induced increase in [Ca(2+)](i), with no change in the KCl-induced increase in [Ca(2+)](i). These I/R-induced alterations in Ca(2+) handling by cardiomyocytes were attenuated by treatment of hearts with NAC or MPG. Furthermore, reduction in the isoproterenol-, ATP-, ouabain-, and caffeine-induced increases in [Ca(2+)](i) in cardiomyocytes from I/R hearts were limited by treatment with NAC or MPG. The increases in the basal [Ca(2+)](i), unlike the KCl-induced increase in [Ca(2+)](i), were fully or partially prevented by both NAC and MPG upon exposing cardiomyocytes to hypoxia-reoxygenation, H(2)O(2), or a mixture of xanthine and xanthine oxidase. These results suggest that improvement in cardiac function of I/R hearts treated with NAC or MPG was associated with attenuation of changes in Ca(2+) handling by cardiomyocytes, and the results support the view that oxidative stress due to oxyradical generation and peroxynitrite formation plays an important role in the development of intracellular Ca(2+) overload in cardiomyocytes as a consequence of I/R injury.

Monodisperse cobalt ferrite nanoparticles assembled on mesoporous graphitic carbon nitride (CoFe2O4/mpg-C3N4): A magnetically recoverable nanocomposite for the photocatalytic degradation of organic dyes

NASA Astrophysics Data System (ADS)

Hassani, Aydin; Eghbali, Paria; Ekicibil, Ahmet; Metin, Önder

2018-06-01

Monodisperse cobalt ferrite (CoFe2O4) nanoparticles (NPs) were synthesized by thermal decomposition of metal precursors in the presence of surfactants and then assembled on mesoporous graphitic carbon nitride (mpg-C3N4) via sonication of two components in ethanol solution. The yielded nanocomposite, namely CoFe2O4/mpg-C3N4, were characterized by using many advanced analytical techniques (TEM, HR-SEM, EDX, XRD, BET, PPMS-VSM, UV-vis DRS and ICP-MS). The magnetic properties of the CoFe2O4/mpg-C3N4 nanocomposite were studied by using M-H and M-T loops and the magnetic saturation and blocking temperature of the nanocomposite were found to be 6.1 emu/g and 269 K, respectively. The nanocomposite were then tested in the photocatalytic degradation of Malachite Green (MG) and showed considerably high photocatalytic activity under UV-light irradiation. The effects of various key operating parameters comprising catalyst amount, initial dye concentration, pH and reaction time span for the degradation of MG dye were studied to optimize the reaction conditions. The maximum degradation efficiency (DE %) of 93.41% was obtained by using 0.08 g L-1 catalyst and 10 mg L-1 MG dye at pH 5 within 120 min reaction time. Besides MG, the photocatalytic degradation of several other organic dyes (methylene blue, acid orange 7 and rhodamine B) was also studied to exhibit the performance of CoFe2O4/mpg-C3N4 nanocomposite under the optimized conditions. The results revealed that the kinetic of dye removal process could be designated through the application of pseudo-first-order kinetic model. In addition to high photocatalytic activity, CoFe2O4/mpg-C3N4 nanocomposite could be magnetically recovered after the dye degradation and reused for consecutive five runs without a significant loss (nearly 17%) in their initial performance.

ABAEnrichment: an R package to test for gene set expression enrichment in the adult and developing human brain.

PubMed

Grote, Steffi; Prüfer, Kay; Kelso, Janet; Dannemann, Michael

2016-10-15

We present ABAEnrichment, an R package that tests for expression enrichment in specific brain regions at different developmental stages using expression information gathered from multiple regions of the adult and developing human brain, together with ontologically organized structural information about the brain, both provided by the Allen Brain Atlas. We validate ABAEnrichment by successfully recovering the origin of gene sets identified in specific brain cell-types and developmental stages. ABAEnrichment was implemented as an R package and is available under GPL (≥ 2) from the Bioconductor website (http://bioconductor.org/packages/3.3/bioc/html/ABAEnrichment.html). steffi_grote@eva.mpg.de, kelso@eva.mpg.de or michael_dannemann@eva.mpg.deSupplementary information: Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press.

VizieR Online Data Catalog: PACS Evolutionary Probe (PEP-DR1) catalogs (Lutz+, 2011)

NASA Astrophysics Data System (ADS)

Lutz, D.; Poglitsch, A.; Altieri, B.; Andreani, P.; Aussel, H.; Berta, S.; Bongiovanni, A.; Brisbin, D.; Cava, A.; Cepa, J.; Cimatti, A.; Daddi, E.; Dominguez-Sanchez, H.; Elbaz, D.; Foerster Schreiber, N. M.; Genzel, R.; Grazian, A.; Gruppioni, C.; Harwit, M.; Le Floc'h, E.; Magdis, G.; Magnelli, B.; Maiolino, R.; Nordon, R.; Perez Garcia, A. M.; Popesso, P.; Pozzi, F.; Riguccini, L.; Rodighiero, G.; Saintonge, A.; Sanchez Portal, M.; Santini, P.; Shao, L.; Sturm, E.; Tacconi, L. J.; Valtchanov, I.; Wetzstein, M.; Wieprecht, E.

2013-11-01

PACS catalogs built by the PEP team, with key contributions by Stefano Berta, Benjamin Magnelli, Paola Popesso, Dieter Lutz, Francesca Pozzi, Bruno Altieri, Herve Aussel, Hoseong Hwang, Emeric Le Floc'h, Georgios Magdis, Raanan Nordon, Albrecht Poglitsch, Laurie Riguccini, Amelie Saintonge, Li Shao. For more details, please refer to Lutz et al. (2011A&A...532A..90L) and to the PDF documentation associated to the release. Data and catalogs can be retrieved from the web page http://www.mpe.mpg.de/ir/Research/PEP/publicdatareleases.php See the PDF documentation associated to the PEP DR1 release, http://www.mpe.mpg.de/resources/PEP/DR1tarballs/readmePEP_global.pdf and http://www.mpe.mpg.de/resources/PEP/DR1tarballs/readmePEP_SPIRE.pdf for more details. (69 data files).

Eighteen-Month Final Evaluation of UPS Second Generation Diesel Hybrid-Electric Delivery Vans

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lammert, M.; Walkowicz, K.

2012-09-01

A parallel hybrid-electric diesel delivery van propulsion system was evaluated at a UPS facility in Minneapolis using on-vehicle data logging, fueling, and maintenance records. Route and drive cycle analysis showed different duty cycles for hybrid vs. conventional delivery vans; routes were switched between the study groups to provide a valid comparison. The hybrids demonstrated greater advantage on the more urban routes; the initial conventional vans' routes had less dense delivery zones. The fuel economy of the hybrids on the original conventional group?s routes was 10.4 mpg vs. 9.2 mpg for the conventional group on those routes a year earlier. Themore » hybrid group's fuel economy on the original hybrid route assignments was 9.4 mpg vs. 7.9 mpg for the conventional group on those routes a year later. There was no statistically significant difference in total maintenance cost per mile or for the vehicle total cost of operation per mile. Propulsion-related maintenance cost per mile was 77% higher for the hybrids, but only 52% more on a cost-per-delivery-day basis. Laboratory dynamometer testing demonstrated 13%-36% hybrid fuel economy improvement, depending on duty cycle, and up to a 45% improvement in ton-mi/gal. NOx emissions increased 21%-49% for the hybrids in laboratory testing.« less

Cell penetrating peptide-modified poly(lactic-co-glycolic acid) nanoparticles with enhanced cell internalization.

PubMed

Steinbach, Jill M; Seo, Young-Eun; Saltzman, W Mark

2016-01-01

The surface modification of nanoparticles (NPs) can enhance the intracellular delivery of drugs, proteins, and genetic agents. Here we studied the effect of different surface ligands, including cell penetrating peptides (CPPs), on the cell binding and internalization of poly(lactic-co-glycolic) (PLGA) NPs. Relative to unmodified NPs, we observed that surface-modified NPs greatly enhanced cell internalization. Using one CPP, MPG (unabbreviated notation), that achieved the highest degree of internalization at both low and high surface modification densities, we evaluated the effect of two different NP surface chemistries on cell internalization. After 2h, avidin-MPG NPs enhanced cellular internalization by 5 to 26-fold relative to DSPE-MPG NP formulations. Yet, despite a 5-fold increase in MPG density on DSPE compared to Avidin NPs, both formulations resulted in similar internalization levels (48 and 64-fold, respectively) after 24h. Regardless of surface modification, all NPs were internalized through an energy-dependent, clathrin-mediated process, and became dispersed throughout the cell. Overall both Avidin- and DSPE-CPP modified NPs significantly increased internalization and offer promising delivery options for applications in which internalization presents challenges to efficacious delivery. Copyright © 2015 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.

Theoretical analysis and simulation of the influence of self-bunching effects and longitudinal space charge effects on the propagation of keV electron bunch produced by a novel S-band Micro-Pulse electron Gun

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhao, Jifei; Lu, Xiangyang, E-mail: xylu@pku.edu.cn; Yang, Ziqin

As an important electron source, Micro-Pulse electron Gun (MPG) which is qualified for producing high average current, short pulse, low emittance electron bunches steadily holds promise to use as an electron source of Coherent Smith-Purcell Radiation (CSPR), Free Electron Laser (FEL). The stable output of S-band MPG has been achieved in many labs. To establish reliable foundation for the future application of it, the propagation of picosecond electron bunch produced by MPG should be studied in detail. In this article, the MPG which was working on the rising stage of total effective Secondary Electron Yield (SEY) curve was introduced. Themore » self-bunching mechanism was discussed in depth both in the multipacting amplifying state and the steady working state. The bunch length broadening induced by the longitudinal space-charge (SC) effects was investigated by different theoretical models in different regions. The 2D PIC codes MAGIC and beam dynamic codes TraceWin simulations were also performed in the propagation. The result shows an excellent agreement between the simulation and the theoretical analysis for bunch length evolution.« less

Light-duty vehicle fuel economy improvements, 1979--1998: A consumer purchase model of corporate average fuel economy, fuel price, and income effects

NASA Astrophysics Data System (ADS)

Chien, David Michael

2000-10-01

The Energy Policy and Conservation Act of 1975, which created fuel economy standards for automobiles and light trucks, was passed by Congress in response to the rapid rise in world oil prices as a result of the 1973 oil crisis. The standards were first implemented in 1978 for automobiles and 1979 for light trucks, and began with initial standards of 18 MPG for automobiles and 17.2 MPG for light trucks. The current fuel economy standards for 1998 have been held constant at 27.5 MPG for automobiles and 20.5 MPG for light trucks since 1990--1991. While actual new automobile fuel economy has almost doubled from 14 MPG in 1974 to 27.2 MPG in 1994, it is reasonable to ask if the CAFE standards are still needed. Each year Congress attempts to pass another increase in the Corporate Average Fuel Economy (CAFE) standard and fails. Many have called for the abolition of CAFE standards citing the ineffectiveness of the standards in the past. In order to determine whether CAFE standards should be increased, held constant, or repealed, an evaluation of the effectiveness of the CAFE standards to date must be established. Because fuel prices were rising concurrently with the CAFE standards, many authors have attributed the rapid rise in new car fuel economy solely to fuel prices. The purpose of this dissertation is to re-examine the determinants of new car fuel economy via three effects: CAFE regulations, fuel price, and income effects. By measuring the marginal effects of the three fuel economy determinants upon consumers and manufacturers choices, for fuel economy, an estimate was made of the influence of each upon new fuel economy. The conclusions of this dissertation present some clear signals to policymakers: CAFE standards have been very effective in increasing fuel economy from 1979 to 1998. Furthermore, they have been the main cause of fuel economy improvement, with income being a much smaller component. Furthermore, this dissertation has suggested that fuel prices have very limited effects upon fuel economy, ranging from no primary effect on certain size classes to a minimal secondary effect through higher performance or horsepower demanded.

Comprehensive, comprehensible, distributed and intelligent databases: current status.

PubMed

Frishman, D; Heumann, K; Lesk, A; Mewes, H W

1998-01-01

It is only a matter of time until a user will see not many but one integrated database of information for molecular biology. Is this true? Is it a good thing? Why will it happen? Where are we now? What developments are fostering and what developments are impeding progress towards this end? A list of WWW resources devoted to database issues in molecular biology is available at http://www.mips.biochem.mpg.de frishman@mips.biochem.mpg.de

A fluorescent sensor for selective detection of cyanide using mesoporous graphitic carbon(IV) nitride.

PubMed

Lee, Eun Zoo; Lee, Sun Uk; Heo, Nam-Su; Stucky, Galen D; Jun, Young-Si; Hong, Won Hi

2012-04-25

A turn-on fluorescence sensor, Cu(2+)-c-mpg-C(3)N(4), was developed for detection of CN(-) in aqueous solution by simply mixing cubic mesoporous graphitic carbon nitride (c-mpg-C(3)N(4)) and aqueous solution of Cu(NO(3))(2). The highly sensitive detection of CN(-) with a detection limit of 80 nM is not only possible in aqueous solution but also in human blood serum.

Space Launch System (SLS) Mission Planner's Guide

NASA Technical Reports Server (NTRS)

Smith, David Alan

2017-01-01

The purpose of this Space Launch System (SLS) Mission Planner's Guide (MPG) is to provide future payload developers/users with sufficient insight to support preliminary SLS mission planning. Consequently, this SLS MPG is not intended to be a payload requirements document; rather, it organizes and details SLS interfaces/accommodations in a manner similar to that of current Expendable Launch Vehicle (ELV) user guides to support early feasibility assessment. Like ELV Programs, once approved to fly on SLS, specific payload requirements will be defined in unique documentation.

Automotive Stirling Engine Development Program

NASA Technical Reports Server (NTRS)

1978-01-01

The third quarter (April-June, 1978) effort of the Ford/DOE Automotive Stirling Engine Development Program is reported, specifically Task 1 of that effort, which is Fuel Economy Assessment. At the end of this quarter the total fourth generation fuel economy projection was 26.12 MPG (gasoline) with a confidence level of 44%. This represents an improvement of 66.4% over the baseline M-H fuel economy of 15.7 MPG. The confidence level for the original 20.6 MPG goal has been increased from 53% to 57%. Engine 3X17 has accumulated a total of 213 hours of variable speed running. A summary of the individual sub-tasks of Task 1 are given. The sub-tasks are grouped into two categories: Category 1 consists of those sub-tasks which are directly related to fuel economy and Category 2 consists of those sub-tasks which are not directly related to fuel economy but are an integral part of the Task 1 effort.

Caspase-3 dependent nitrergic neuronal apoptosis following cavernous nerve injury is mediated via RhoA and ROCK activation in major pelvic ganglion.

PubMed

Hannan, Johanna L; Matsui, Hotaka; Sopko, Nikolai A; Liu, Xiaopu; Weyne, Emmanuel; Albersen, Maarten; Watson, Joseph W; Hoke, Ahmet; Burnett, Arthur L; Bivalacqua, Trinity J

2016-07-08

Axonal injury due to prostatectomy leads to Wallerian degeneration of the cavernous nerve (CN) and erectile dysfunction (ED). Return of potency is dependent on axonal regeneration and reinnervation of the penis. Following CN injury (CNI), RhoA and Rho-associated protein kinase (ROCK) increase in penile endothelial and smooth muscle cells. Previous studies indicate that nerve regeneration is hampered by activation of RhoA/ROCK pathway. We evaluated the role of RhoA/ROCK pathway in CN regulation following CNI using a validated rat model. CNI upregulated gene and protein expression of RhoA/ROCK and caspase-3 mediated apoptosis in the major pelvic ganglion (MPG). ROCK inhibitor (ROCK-I) prevented upregulation of RhoA/ROCK pathway as well as activation of caspase-3 in the MPG. Following CNI, there was decrease in the dimer to monomer ratio of neuronal nitric oxide synthase (nNOS) protein and lowered NOS activity in the MPG, which were prevented by ROCK-I. CNI lowered intracavernous pressure and impaired non-adrenergic non-cholinergic-mediated relaxation in the penis, consistent with ED. ROCK-I maintained the intracavernous pressure and non-adrenergic non-cholinergic-mediated relaxation in the penis following CNI. These results suggest that activation of RhoA/ROCK pathway mediates caspase-3 dependent apoptosis of nitrergic neurons in the MPG following CNI and that ROCK-I can prevent post-prostatectomy ED.

Out-of-Plane Continuous Electrostatic Micro-Power Generators

PubMed Central

Mahmoud, M. A. E.; Abdel-Rahman, E. M.; Mansour, R. R.; El-Saadany, E. F.

2017-01-01

This paper presents an out-of-plane electrostatic micro-power generator (MPG). Electret-based continuous MPGs with different gaps and masses are fabricated to demonstrate the merits of this topology. Experimental results of the MPG demonstrate output power of 1 mW for a base acceleration amplitude and frequency of 0.08 g and 86 Hz. The MPGs also demonstrate a wideband harvesting bandwidth reaching up to 9 Hz. A free-flight and an impact mode model of electrostatic MPGs are also derived and validated by comparison to experimental results. PMID:28420151

Base excision repair imbalance in colorectal cancer has prognostic value and modulates response to chemotherapy

PubMed Central

Leguisamo, Natalia M.; Gloria, Helena C.; Kalil, Antonio N.; Martins, Talita V.; Azambuja, Daniel B.

2017-01-01

Colorectal cancer (CRC) is prevalent worldwide, and treatment often involves surgery and genotoxic chemotherapy. DNA repair mechanisms, such as base excision repair (BER) and mismatch repair (MMR), may not only influence tumour characteristics and prognosis but also dictate chemotherapy response. Defective MMR contributes to chemoresistance in colorectal cancer. Moreover, BER affects cellular survival by repairing genotoxic base damage in a process that itself can disrupt metabolism. In this study, we characterized BER and MMR gene expression in colorectal tumours and the association between this repair profile with patients’ clinical and pathological features. In addition, we exploited the possible mechanisms underlying the association between altered DNA repair, metabolism and response to chemotherapy. Seventy pairs of sporadic colorectal tumour samples and adjacent non-tumour mucosal specimens were assessed for BER and MMR gene and protein expression and their association with pathological and clinical features. MMR-deficient colon cancer cells (HCT116) transiently overexpressing MPG or XRCC1 were treated with 5-FU or TMZ and evaluated for viability and metabolic intermediate levels. Increase in BER gene and protein expression is associated with more aggressive tumour features and poor pathological outcomes in CRC. However, tumours with reduced MMR gene expression also displayed low MPG, OGG1 and PARP1 expression. Imbalancing BER by overexpression of MPG, but not XRCC1, sensitises MMR-deficient colon cancer cells to 5-FU and TMZ and leads to ATP depletion and lactate accumulation. MPG overexpression alters DNA repair and metabolism and is a potential strategy to overcome 5-FU chemotherapeutic resistance in MMR-deficient CRC. PMID:28903334

The Effect of Temperature on Umami Taste

PubMed Central

Alvarado, Cynthia; Andrew, Kendra; Nachtigal, Danielle

2016-01-01

The effect of temperature on umami taste has not been previously studied in humans. Reported here are 3 experiments in which umami taste was measured for monopotassium glutamate (MPG) and monosodium glutamate (MSG) at solution temperatures between 10 and 37 °C. Experiment 1 showed that for subjects sensitive to MPG on the tongue tip, 1) cooling reduced umami intensity whether sampled with the tongue tip or in the whole mouth, but 2) had no effect on the rate of umami adaptation on the tongue tip. Experiment 2 showed that temperature had similar effects on the umami taste of MSG and MPG on the tongue tip but not in the whole mouth, and that contrary to umami taste, cooling to 10 °C increased rather than decreased the salty taste of both stimuli. Experiment 3 was designed to investigate the contribution of the hT1R1–hT1R3 glutamate receptor to the cooling effect on umami taste by using the T1R3 inhibitor lactisole. However, lactisole failed to block the umami taste of MPG at any temperature, which supports prior evidence that lactisole does not block umami taste for all ligands of the hT1R1–hT1R3 receptor. We conclude that temperature can affect sensitivity to the umami and salty tastes of glutamates, but in opposite directions, and that the magnitude of these effects can vary across stimuli and modes of tasting (i.e., whole mouth vs. tongue tip exposures). PMID:27102813

Upgraded automotive gas turbine engine design and development program, volume 2

NASA Technical Reports Server (NTRS)

Wagner, C. E. (Editor); Pampreen, R. C. (Editor)

1979-01-01

Results are presented for the design and development of an upgraded engine. The design incorporated technology advancements which resulted from development testing on the Baseline Engine. The final engine performance with all retro-fitted components from the development program showed a value of 91 HP at design speed in contrast to the design value of 104 HP. The design speed SFC was 0.53 versus the goal value of 0.44. The miss in power was primarily due to missing the efficiency targets of small size turbomachinery. Most of the SFC deficit was attributed to missed goals in the heat recovery system relative to regenerator effectiveness and expected values of heat loss. Vehicular fuel consumption, as measured on a chassis dynamometer, for a vehicle inertia weight of 3500 lbs., was 15 MPG for combined urban and highway driving cycles. The baseline engine achieved 8 MPG with a 4500 lb. vehicle. Even though the goal of 18.3 MPG was not achieved with the upgraded engine, there was an improvement in fuel economy of 46% over the baseline engine, for comparable vehicle inertia weight.

Investigation on extracellular polymeric substances, sludge flocs morphology, bound water release and dewatering performance of sewage sludge under pretreatment with modified phosphogypsum.

PubMed

Dai, Quxiu; Ma, Liping; Ren, Nanqi; Ning, Ping; Guo, Zhiying; Xie, Longgui; Gao, Haijun

2018-06-06

Modified phosphogypsum (MPG) was developed to improve dewaterability of sewage sludge, and dewatering performance, properties of treated sludge, composition and morphology distribution of EPS, dynamic analysis and multiple regression model on bound water release were investigated. The results showed that addition of MPG caused extracellular polymeric substances (EPS) disintegration through charge neutralization. Destruction of EPS promoted the formation of larger sludge flocs and the release of bound water into supernatant. Simultaneously, content of organics with molecular weight between 1000 and 7000 Da in soluble EPS (SB-EPS) increased with increasing of EPS dissolved into the liquid phase. Besides, about 8.8 kg•kg -1 DS of bound water was released after pretreatment with 40%DS MPG dosage. Additionally, a multiple linear regression model for bound water release was established, showing that lower loosely bond EPS (LB-EPS) content and specific resistance of filtration (SRF) may improve dehydration performance, and larger sludge flocs may be beneficial for sludge dewatering. Copyright © 2018 Elsevier Ltd. All rights reserved.

[Legal aspects of reuse and re-sterilization of disposable products in the hospital].

PubMed

Bohle, T

2000-06-01

What consequences may follow if the hospital administration decides to introduce recycling and resterilisation of disposable medical products? While some consider the chief executive administrators and doctors to be seriously endangered by the legal implications of the German Medical Products Act (MPG), others consider recycling and resterilisation to be clearly admissible. A closer look at what constitutes an offence as described in sec. 43, para 1 No. 1 of the MPG reveals that mere presumptions do not suffice to incur the respective penalties; rather, a concrete, scientifically sound basis for assuming an endangerment of safety or health are required for penal measures to be justified. The manufacturer's designation "for once-only use" may not be considered "intended purpose" as stipulated in sec. 4, para 1 No. 1 of the MPG. If recycling or resterilisation be confined to self-made disposables, there is no necessity for CE marking. Information of the patient and individual documentation must be extended to cover the use of recycled or resterilised disposable products only if the use of the latter may constitute a significant additional danger to the patient.

Midline posterior glossectomy and lingual tonsillectomy in obese and nonobese children with down syndrome: Biomarkers for success.

PubMed

Propst, Evan J; Amin, Reshma; Talwar, Natasha; Zaman, Michele; Zweerink, Allison; Blaser, Susan; Zaarour, Christian; Luginbuehl, Igor; Karsli, Cengiz; Aziza, Albert; Forrest, Christopher; Drake, James; Narang, Indra

2017-03-01

To examine outcomes following midline posterior glossectomy (MPG) plus lingual tonsillectomy (LT) for the treatment of significant obstructive sleep apnea (OSA) in children with Down syndrome (DS). Patients with DS who had persistent OSA following tonsillectomy and adenoidectomy (TA) and were relatively intolerant of positive airway pressure (PAP) therapy were evaluated by physical examination and sleep/CINE magnetic resonance imaging to determine the etiology of upper airway obstruction. Patients with relative macroglossia underwent MPG plus LT if required. Successful surgical outcome was defined as the resolution of OSA or the ability to tolerate PAP. Thirteen children (8 male, 5 female), mean (standard deviation) age 14.2 (4.0) years underwent MPG plus LT. Fifty-four percent of patients were obese (Body mass index [BMI] > 95th centile) and 8% were overweight (BMI 85th-95th centile) preoperatively. All patients underwent pre- and postoperative polysomnography. Postoperatively, the obstructive apnea-hypopnea index fell significantly from 47.0/hour to 5.6/hour (P <.05) in normal weight individuals who did not become obese, but not in obese patients or those who became obese postoperatively. Successful surgical outcome was seen in all (N = 6) children who were normal weight or overweight preoperatively compared with none who were obese preoperatively (N = 7). Midline posterior glossectomy and LT are beneficial in normal weight and overweight children with DS who have persistent OSA following TA and are intolerant of PAP therapy. Obesity pre- or postoperatively portends a worse prognosis following MPG, suggesting that aggressive weight loss initiatives should be considered as an adjunct to surgery in this population. 4. Laryngoscope, 127:757-763, 2017. © 2016 The American Laryngological, Rhinological and Otological Society, Inc.

Beneficial Effects of N-acetylcysteine and N-mercaptopropionylglycine on Ischemia Reperfusion Injury in the Heart.

PubMed

Bartekova, Monika; Barancik, Miroslav; Ferenczyova, Kristina; Dhalla, Naranjan S

2018-01-30

Ischemia-reperfusion (I/R) injury of the heart as a consequence of myocardial infarction or cardiac surgery represents a serious clinical problem. One of the most prominent mechanisms of I/R injury is the development of oxidative stress in the heart. In this regard, I/R has been shown to enhance the production of reactive oxygen/nitrogen species in the heart which lead to the imbalance between the pro-oxidants and antioxidant capacities of the endogenous radical-scavenging systems. Increasing the antioxidant capacity of the heart by the administration of exogenous antioxidants is considered beneficial for the heart exposed to I/R. N-acetylcysteine (NAC) and Nmercaptopropionylglycine (MPG) are two sulphur containing amino acid substances, which belong to the broad category of exogenous antioxidants that have been tested for their protective potential in cardiac I/R injury. Pretreatment of hearts with both NAC and MPG has demonstrated that these agents attenuate the I/R-induced alterations in sarcolemma, sarcoplasmic reticulum, mitochondria and myofibrils in addition to improving cardiac function. While experimental studies have revealed promising data suggesting beneficial effects of NAC and MPG in cardiac I/R injury, the results of clinical trials are not conclusive because both positive and no effects of these substances have been reported on the post-ischemic recovery of heart following cardiac surgery or myocardial infarction. It is concluded that both NAC and MPG exert beneficial effects in preventing the I/Rinduced injury; however, further studies are needed to establish their effectiveness in reversing the I/R-induced abnormalities in the heart. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

Evaluation of the performance of Human Papillomavirus testing in paired urine and clinician-collected cervical samples among women aged over 30 years in Bhutan.

PubMed

Tshomo, Ugyen; Franceschi, Silvia; Tshokey, Tshokey; Tobgay, Tashi; Baussano, Iacopo; Tenet, Vanessa; Snijders, Peter J F; Gheit, Tarik; Tommasino, Massimo; Vorsters, Alex; Clifford, Gary M

2017-04-08

Urine sampling may offer a less invasive solution than cervical sampling to test for human papillomavirus (HPV) for HPV vaccine impact monitoring. Paired samples of urine and exfoliated cervical cells were obtained for 89 women with history of high-risk (HR) HPV-positive normal cytology in Bhutan. Urine sampling protocol included self-collection of first-void urine immediately into a conservation medium and procedures to optimize DNA yield. Colposcopical abnormalities were biopsied. Two HPV assays were used: a multiplex type-specific PCR (E7-MPG) and a less analytically sensitive GP5+/6+ PCR followed by reverse line blot. HPV positivity for 21 types common to both assays was similar in urine and cells by E7-MPG (62.9% and 57.3%, respectively, p = 0.32) but lower in urine by GP5+/6+ (30.3% and 40.4%, p = 0.05). HPV6/11/16/18 positivity did not significantly differ between urine and cells by either assay. Sensitivity of urine (using cells as gold standard) to detect 21 HPV types was 80% and 58% for E7-MPG and GP5+/6+, respectively, with specificity 61% and 89%. HPV type distribution in urine and cells was similar, regardless of assay. The 5 detected CIN3+ were HR-HPV positive in cells by both assays, compared to 4 and 3 by E7-MPG and GP5+/6+, respectively, in urine samples. For the monitoring of vaccine impact, we demonstrate validity of a urine sampling protocol to obtain HPV prevalence data that are broadly comparable to that from cervical cells. However, detection of HPV in urine varies according to assay sensitivity, presumably because low level infections are frequent.

Fuel economy and exhaust emissions characteristics of diesel vehicles: Test results of a prototype Chrysler Volare, 225 CID (3.7-liter) automobile

NASA Technical Reports Server (NTRS)

Walter, R. A.

1982-01-01

The results obtained from fuel economy and emission tests conducted on a prototype Chrysler Volare diesel vehicle are documented. The vehicle was tested on a chassis dynamometer over selected drive cycles and steady-state conditions. The fuel used, was a DOE/BETC referee fuel. Particulate emission rates were calculated from dilution tunnel measurements and large volume particulate samples were collected for biological and chemical analysis. The vehicle obtained 32.7 mpg for the FTP urban cycle and 48.8 mpg for the highway cycle. The emissions rates were 0.42/1.58/1.17/0.28 g/mile of HC, CO, NOx and particulates respectively.

Advanced automotive diesel engine system study

NASA Technical Reports Server (NTRS)

1983-01-01

A conceptual study of an advanced automotive diesel engine is discussed. The engine concept selected for vehicle installation was a supercharged 1.4 liter, 4 cylinder spark assisted diesel of 14:1 compression ratio. A compounding unit consisting of a Lysholm compressor and expander is connected to the engine crankshaft by a belt drive. The inlet air charge is heated by the expander exhaust gas via a heat exchanger. Four levels of technology achievement on the selected engine concept were evaluated, from state-of-the-art to the ideal case. This resulted in the fuel economy increasing from 53.2 mpg to 81.7 mpg, and the 0-60 mph time decreasing from 17.6 seconds to 10.9 seconds.

Mining Survey System (MSS) - innovative solution in Polish mines. (Polish Title: Mobilna Platforma Gurnicza (MPG) - nowatorskim rozwilazaniem w polskich kopalniach)

NASA Astrophysics Data System (ADS)

Adamek, A.

2015-12-01

Mobile laser scanning technology is developing rapidly also in mining. For several years research and tests are conducted on the use of that type of measurement in the inventory of the mine shafts. The company SKALA 3D in the project 1.4 POIG by PARP undertook to create Mobile automatic steering system of spatial geometry measurements mine shafts using laser scanning technology. Its main advantage is a faithful reflection of the object being measured in just a few hours. It is based on the data flowing from laser scanners and precision inertial unit. The main problem of the research was to determine the trajectory of the passing Mobile Platforms Mining (MPG) in the shaft as accurately as possible. Unable to receive signals from satellites in the pipe shaft prevented the use of solutions known for measuring terrestrial mobile systems. The company SKALA 3D has developed a methodology for determine the trajectory of the system, based on geometrical data coming from laser scanners and readings of accelerometers and gyroscopes of inertial unit. To improve the quality and accuracy of measurements MPG is also equipped with a set of anti-vibration parts prevent the transmission of vibrations ascending while cage is moving in the shaft on the measuring system. The whole forms a calibrated system, which in a short time is able to provide spatial measurement data from the measuring shaft. The accuracy of 2-3 mm in a single measurement horizon and a few centimeters determine the position of a point on the thousandth meter below ground make the system very accurate. During the project there have been numerous research problems, including the need to define the physical references, drift of IMU whether harsh weather conditions in the shaft. However, the company SKALA 3D solved these problems and making MPG unique in the world.

In-use fuel economy of hybrid-electric school buses in Iowa.

PubMed

Hallmark, Shauna; Sperry, Bob; Mudgal, Abhisek

2011-05-01

Although it is much safer and more fuel-efficient to transport children to school in buses than in private vehicles, school buses in the United States still consume 822 million gal of diesel fuel annually, and school transportation costs can account for a significant portion of resource-constrained school district budgets. Additionally, children in diesel-powered school buses may be exposed to higher levels of particulates and other pollutants than children in cars. One solution to emission and fuel concerns is use of hybrid-electric school buses, which have the potential to reduce emissions and overall lifecycle costs compared with conventional diesel buses. Hybrid-electric technologies are available in the passenger vehicle market as well as the transit bus market and have a track record indicating fuel economy and emissions benefits. This paper summarizes the results of an in-use fuel economy evaluation for two plug-in hybrid school buses deployed in two different school districts in Iowa. Each school district selected a control bus with a route similar to that of the hybrid bus. Odometer readings, fuel consumption, and maintenance needs were recorded for each bus. The buses were deployed in 2008 and data were collected through May 2010. Fuel consumption was calculated for each school district. In Nevada, IA, the overall average fuel economy was 8.23 mpg for the hybrid and 6.35 mpg for the control bus. In Sigourney, IA, the overall average fuel economy was 8.94 mpg for the hybrid and 6.42 mpg for the control bus. The fuel consumption data were compared for the hybrid and control buses using a Wilcoxon signed rank test. Results indicate that fuel economy for the Nevada hybrid bus was 29.6% better than for the Nevada control bus, and fuel economy for the Sigourney hybrid bus was 39.2% higher than for the Sigourney control bus. Both differences were statistically significant.

Some lumbar sympathetic neurons develop a glutamatergic phenotype after peripheral axotomy with a note on VGLUT2-positive perineuronal baskets

PubMed Central

Brumovsky, Pablo R.; Seroogy, Kim B.; Lundgren, Kerstin H.; Watanabe, Masahiko; Hökfelt, Tomas; Gebhart, G. F.

2011-01-01

Glutamate is the main excitatory neurotransmitter in the nervous system, including in primary afferent neurons. However, to date a glutamatergic phenotype of autonomic neurons has not been described. Therefore, we explored the expression of vesicular glutamate transporters (VGLUTs) type 1, 2 and 3 in lumbar sympathetic chain (LSC) and major pelvic ganglion (MPG) of naïve BALB/C mice, as well as after pelvic nerve axotomy (PNA), using immunohistochemistry and in situ hybridization. Colocalization with activating transcription factor-3 (ATF-3), tyrosine hydroxylase (TH), vesicular acetylcholine transporter (VAChT) and calcitonin generelated peptide was also examined. Sham-PNA, sciatic nerve axotomy (SNA) or naïve mice were included. In naïve mice, VGLUT2-like immunoreactivity (LI) was only detected in fibers and varicosities in LSC and MPG; no ATF-3-immunoreactive (IR) neurons were visible. In contrast, PNA induced upregulation of VGLUT2 protein and transcript, as well as of ATF-3-LI in subpopulations of LSC neurons. Interestingly, VGLUT2-IR LSC neurons coexpressed ATF-3, and often lacked the noradrenergic marker TH. SNA only increased VGLUT2 protein and transcript in scattered LSC neurons. Neither PNA nor SNA upregulated VGLUT2 in MPG neurons. We also found perineuronal baskets immunoreactive either for VGLUT2 or the acetylcholinergic marker VAChT in non-PNA MPGs, usually around TH-IR neurons. VGLUT1-LI was restricted to some varicosities in MPGs, was absent in LSCs, and remained largely unaffected by PNA or SNA. This was confirmed by the lack of expression of VGLUT1 or VGLUT3 mRNAs in LSCs, even after PNA or SNA. Taken together, axotomy of visceral and non-visceral nerves results in a glutamatergic phenotype of some LSC neurons. In addition, we show previously non-described MPG perineuronal glutamatergic baskets. PMID:21596036

Early lactation production, health, and welfare characteristics of cows selected for extended lactation.

PubMed

Lehmann, J O; Mogensen, L; Kristensen, T

2017-02-01

Some cows are able to achieve relatively high milk yields during extended lactations beyond 305 d in milk, and farmers may be able to use this potential by selecting the most suitable cows for an extended lactation. However, the decision to postpone insemination has to rely on information available in early lactation. The main objectives of this study were, therefore, to assess the association between the information available in early lactation and the relative milk production of cows on extended lactation, and to investigate if this information can be used to differentiate time of first insemination between cows. Data came from 4 Danish private herds practicing extended lactation in which some cows are selected to have a delayed time of planned first insemination. Average herd size varied from 93 to 157 cows, and milk yield varied from 7,842 to 12,315 kg of energy-corrected milk (ECM) per cow per year across herds. The analysis was based on 422 completed extended lactations (427 ± 87 d), and each lactation was assigned to 1 of 3 (low, medium, and high) milk performance groups (MPG) within parity group within herd based on a standardized lactation yield. For cows in the high MPG, peak ECM yield, and ECM yield at dry off were significantly greater, the relative reduction in milk yield between 60 and 305 d in milk was significantly smaller, and a smaller proportion had a body condition score (scale: 1-5) at dry off of 3.5 or greater compared with cows in low MPG. Previous lactation days in milk at peak ECM yield and ECM yield at dry off were higher, the relative reduction in milk yield between 60 and 305 d in milk was smaller, and the number of inseminations per conception was higher for multiparous cows in high MPG compared with low. Current lactation ECM yield at second and third milk recording were greater for cows in high MPG compared with low. A principal component analysis indicated that variables related to fertility, diseases, and milk yield explained most of the total variation between primiparous cows, whereas variables related to milk yield, fertility, and days in milk at peak yield were the most dominating for multiparous cows. Our study indicated that milk yields in previous lactation and at second and third milk recording correlate well with milk production potential, and therefore, may be promising indicators when selecting the most suitable cows for extended lactation. Copyright © 2017 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

Validation Testing of a Peridynamic Impact Damage Model Using NASA's Micro-Particle Gun

NASA Technical Reports Server (NTRS)

Baber, Forrest E.; Zelinski, Brian J.; Guven, Ibrahim; Gray, Perry

2017-01-01

Through a collaborative effort between the Virginia Commonwealth University and Raytheon, a peridynamic model for sand impact damage has been developed1-3. Model development has focused on simulating impacts of sand particles on ZnS traveling at velocities consistent with aircraft take-off and landing speeds. The model reproduces common features of impact damage including pit and radial cracks, and, under some conditions, lateral cracks. This study focuses on a preliminary validation exercise in which simulation results from the peridynamic model are compared to a limited experimental data set generated by NASA's recently developed micro-particle gun (MPG). The MPG facility measures the dimensions and incoming and rebound velocities of the impact particles. It also links each particle to a specific impact site and its associated damage. In this validation exercise parameters of the peridynamic model are adjusted to fit the experimentally observed pit diameter, average length of radial cracks and rebound velocities for 4 impacts of 300 µm glass beads on ZnS. Results indicate that a reasonable fit of these impact characteristics can be obtained by suitable adjustment of the peridynamic input parameters, demonstrating that the MPG can be used effectively as a validation tool for impact modeling and that the peridynamic sand impact model described herein possesses not only a qualitative but also a quantitative ability to simulate sand impact events.

A non-covalent peptide-based strategy for ex vivo and in vivo oligonucleotide delivery.

PubMed

Crombez, Laurence; Morris, May C; Heitz, Frederic; Divita, Gilles

2011-01-01

The dramatic acceleration in identification of new nucleic acid-based therapeutic molecules such as short interfering RNA (siRNA) and peptide-nucleic acid (PNA) analogues has provided new perspectives for therapeutic targeting of specific genes responsible for pathological disorders. However, the poor cellular uptake of nucleic acids together with the low permeability of the cell membrane to negatively charged molecules remain major obstacles to their clinical development. Several non-viral strategies have been proposed to improve the delivery of synthetic short oligonucleotides both in cultured cells and in vivo. Cell-penetrating peptides constitute very promising tools for non-invasive cellular import of oligonucleotides and analogs. We recently described a non-covalent strategy based on short amphiphatic peptides (MPG8/PEP3) that have been successfully applied ex vivo and in vivo for the delivery of therapeutic siRNA and PNA molecules. PEP3 and MPG8 form stable nanoparticles with PNA analogues and siRNA, respectively, and promote their efficient cellular uptake, independently of the endosomal pathway, into a wide variety of cell lines, including primary and suspension lines, without any associated cytotoxicity. This chapter describes easy-to-handle protocols for the use of MPG-8 or PEP-3-nanoparticle technologies for PNA and siRNA delivery into adherent and suspension cell lines as well as in vivo into cancer mouse models.

Increased fuel standards among broad range of energy options

NASA Astrophysics Data System (ADS)

Showstack, Randy

During simpler times, the mention of the word 'cafe' might have primarily conjured up images of sidewalk coffee and tea bars along Paris' Champs-Elysees. However, with today's concerns about energy needs, CAFE or Corporate Average Fuel Economy standards for automobile fuel efficiency is a hot topic.On August 2, the U.S. House of Representa tives passed an energy bill rejecting a proposal to substantially increase CAFE standards for increasingly popular sport utility vehicles (SUVs). The proposal, which would have required SUVs to increase their current fleet average of 20.5 miles per gallon (mpg) to 27.5 mpg by 2007, to equal the current passenger car fleet requirement, was shelved for a requirement to more modestly raise mpgs by cutting total SUV gasoline usage by 5 billion gallons over 6 years.

Results of R/V Yaquina cruise YALOC-74, Leg 3: seabed disposal program, North Pacific study area MPG-2, 33$sup 0$20'N, 151$sup 0$00'W, November 30--December 21, 1974

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heath, G R

1975-07-01

During 10 days in the vicinity of 33$sup 0$20'N, 151$sup 0$00'W (MPG-2 area), three near-bottom current meters were deployed, the bathymetry and subbottom acoustic structure of the surrounding seafloor were determined, and sediment cores were collected for studies of artificial radionuclide distribution, geotechnical properties, geochemical properties, and to identify the character of shallow acoustic reflectors. Large volume water samples for artificial radionuclide studies and suspended sediment were also collected. These samples and data will supplement earlier material to be used in the evaluation of the central North Pacific as a potential site for the ultimate disposal of high-level reactor wastes.more » (auth)« less

A toxicological review of the propylene glycols.

PubMed

Fowles, Jeff R; Banton, Marcy I; Pottenger, Lynn H

2013-04-01

The toxicological profiles of monopropylene glycol (MPG), dipropylene glycol (DPG), tripropylene glycol (TPG) and polypropylene glycols (PPG; including tetra-rich oligomers) are collectively reviewed, and assessed considering regulatory toxicology endpoints. The review confirms a rich data set for these compounds, covering all of the major toxicological endpoints of interest. The metabolism of these compounds share common pathways, and a consistent profile of toxicity is observed. The common metabolism provides scientific justification for adopting a read-across approach to describing expected hazard potential from data gaps that may exist for specific oligomers. None of the glycols reviewed presented evidence of carcinogenic, mutagenic or reproductive/developmental toxicity potential to humans. The pathologies reported in some animal studies either occurred at doses that exceeded experimental guidelines, or involved mechanisms that are likely irrelevant to human physiology and therefore are not pertinent to the exposures experienced by consumers or workers. At very high chronic doses, MPG causes a transient, slight decrease in hemoglobin in dogs and at somewhat lower doses causes Heinz bodies to form in cats in the absence of any clinical signs of anemia. Some evidence for rare, idiosyncratic skin reactions exists for MPG. However, the larger data set indicates that these compounds have low sensitization potential in animal studies, and therefore are unlikely to represent human allergens. The existing safety evaluations of the FDA, USEPA, NTP and ATSDR for these compounds are consistent and point to the conclusion that the propylene glycols present a very low risk to human health.

Retirement of Massimo Tarenghi

NASA Astrophysics Data System (ADS)

Madsen, C.

2013-09-01

Massimo Tarenghi, chronologically MPG/ESO project scientist, NTT project manager, VLT programme manager and first Director, ALMA Director and ESO Representative in Chile, has retired after 35 years at ESO. A brief summary of his achievements is presented.

Automotive Stirling engine development program

NASA Technical Reports Server (NTRS)

Ernst, W.; Richey, A.; Farrell, R.; Riecke, G.; Smith, G.; Howarth, R.; Cronin, M.; Simetkosky, M.; Meacher, J.

1986-01-01

The major accomplishments were the completion of the Basic Stirling Engine (BSE) and the Stirling Engine System (SES) designs on schedule, the approval and acceptance of those designs by NASA, and the initiation of manufacture of BSE components. The performance predictions indicate the Mod II engine design will meet or exceed the original program goals of 30% improvement in fuel economy over a conventional Internal Combustion (IC) powered vehicle, while providing acceptable emissions. This was accomplished while simultaneously reducing Mod II engine weight to a level comparable with IC engine power density, and packaging the Mod II in a 1985 Celebrity with no external sheet metal changes. The projected mileage of the Mod II Celebrity for the combined urban and highway CVS cycle is 40.9 mpg which is a 32% improvement over the IC Celebrity. If additional potential improvements are verified and incorporated in the Mod II, the mileage could increase to 42.7 mpg.

When is it safe to stop patching?

PubMed

Oster, J G; Simon, J W; Jenkins, P

1990-12-01

Prior reports indicate that about half of amblyopia patients successfully treated with occlusion subsequently require maintenance patching. This retrospective study was designed to discover what clinical characteristics might be associated with a stable outcome following primary occlusion. Included were 188 patients who: (1) had amblyopia related to strabismus, anisometropia or media opacity; and (2) were followed up for at least one year after successful primary occlusion. Patients who did not comply with treatment or who did not achieve equal vision were excluded. Their ages ranged from 2 to 119 months (mean 29 months). Eighty-eight patients (47%) who required no further occlusion were designated the clinically stable group (CSG). The remaining 100 (53%), who subsequently needed patching because of unequal acuities, constituted the maintenance patching group (MPG). CSG patients were older at the beginning (mean 33 months) and at the end (mean 40 months) of primary occlusion than were MPG patients (means 26 and 31 months). Primary occlusion was more likely to have been discontinued because of equal recognition acuities in CSG patients, while equal fixation behaviour or preferential looking was more likely in MPG patients. Distribution of diagnoses, severity of amblyopia at presentation, and length of follow-up were similar in the two groups. Visual outcomes at last follow-up were slightly better in the CSG (p = 0.002). We conclude that, in general, patching can be safely discontinued after the third birthday. Although follow-up after primary occlusion is important to ensure stable results in all patients, preverbal children are more likely to require maintenance patching.

Summary of fuel economy performance

DOT National Transportation Integrated Search

2009-03-30

This report contains estimated fleet production numbers and CAFE figures obtained from pre-model year (source 1) and mid-model year (source 2) documents assembled prior to or during the model year. The actual mpg values reported to EPA at the end of ...

Summary of fuel economy performance

DOT National Transportation Integrated Search

2010-04-20

This report contains estimated fleet production numbers and CAFE figures obtained from pre-model year (source I) and mid-model year (source 2) documents assembled prior to or during the model year. The actual mpg values reported to EPA at the end of ...

Summary of fuel economy performance

DOT National Transportation Integrated Search

2009-12-09

This report contains estimated fleet production numbers and CAFE figures obtained from pre-model year (source I) and mid-model year (source 2) documents assembled prior to or during the model year. The actual mpg values reported to EPA at the end of ...

Direct Ca2+-dependent Heterophilic Interaction between Desmosomal Cadherins, Desmoglein and Desmocollin, Contributes to Cell–Cell Adhesion

PubMed Central

Chitaev, Nikolai A.; Troyanovsky, Sergey M.

1997-01-01

Human fibrosarcoma cells, HT-1080, feature extensive adherens junctions, lack mature desmosomes, and express a single known desmosomal protein, Desmoglein 2 (Dsg2). Transfection of these cells with bovine Desmocollin 1a (Dsc1a) caused dramatic changes in the subcellular distribution of endogenous Dsg2. Both cadherins clustered in the areas of the adherens junctions, whereas only a minor portion of Dsg2 was seen in these areas in the parental cells. Deletion mapping showed that intact extracellular cadherin-like repeats of Dsc1a (Arg1-Thr170) are required for the translocation of Dsg2. Deletion of the intracellular C-domain that mediates the interaction of Dsc1a with plakoglobin, or the CSI region that is involved in the binding to desmoplakin, had no effect. Coimmunoprecipitation experiments of cell lysates stably expressing Dsc1a with anti-Dsc or -Dsg antibodies demonstrate that the desmosomal cadherins, Dsg2 and Dsc1a, are involved in a direct Ca2+-dependent interaction. This conclusion was further supported by the results of solid phase binding experiments. These showed that the Dsc1a fragment containing cadherin-like repeats 1 and 2 binds directly to the extracellular portion of Dsg in a Ca2+-dependent manner. The contribution of the Dsg/ Dsc interaction to cell–cell adhesion was tested by coculturing HT-1080 cells expressing Dsc1a with HT-1080 cells lacking Dsc but expressing myc-tagged plakoglobin (MPg). In the latter cells, MPg and the endogenous Dsg form stable complexes. The observed specific coimmunoprecipitation of MPg by anti-Dsc antibodies in coculture indicates that an intercellular interaction between Dsc1 and Dsg is involved in cell–cell adhesion. PMID:9214392

Permutation importance: a corrected feature importance measure.

PubMed

Altmann, André; Toloşi, Laura; Sander, Oliver; Lengauer, Thomas

2010-05-15

In life sciences, interpretability of machine learning models is as important as their prediction accuracy. Linear models are probably the most frequently used methods for assessing feature relevance, despite their relative inflexibility. However, in the past years effective estimators of feature relevance have been derived for highly complex or non-parametric models such as support vector machines and RandomForest (RF) models. Recently, it has been observed that RF models are biased in such a way that categorical variables with a large number of categories are preferred. In this work, we introduce a heuristic for normalizing feature importance measures that can correct the feature importance bias. The method is based on repeated permutations of the outcome vector for estimating the distribution of measured importance for each variable in a non-informative setting. The P-value of the observed importance provides a corrected measure of feature importance. We apply our method to simulated data and demonstrate that (i) non-informative predictors do not receive significant P-values, (ii) informative variables can successfully be recovered among non-informative variables and (iii) P-values computed with permutation importance (PIMP) are very helpful for deciding the significance of variables, and therefore improve model interpretability. Furthermore, PIMP was used to correct RF-based importance measures for two real-world case studies. We propose an improved RF model that uses the significant variables with respect to the PIMP measure and show that its prediction accuracy is superior to that of other existing models. R code for the method presented in this article is available at http://www.mpi-inf.mpg.de/ approximately altmann/download/PIMP.R CONTACT: altmann@mpi-inf.mpg.de, laura.tolosi@mpi-inf.mpg.de Supplementary data are available at Bioinformatics online.

Human methyl purine DNA glycosylase and DNA polymerase ß expression collectively predict sensitivity to temozolomide

PubMed Central

Trivedi, Ram N.; Wang, Xiao-hong; Jelezcova, Elena; Goellner, Eva M.; Tang, Jiangbo; Sobol, Robert W.

2014-01-01

Over-expression of N-methylpurine DNA glycosylase (MPG) has been suggested as a possible gene therapy approach to sensitize tumor cells to the cell killing effects of temozolomide, an imidazotetrazine-class chemotherapeutic alkylating agent. In the present study, we show that both elevated MPG expression and shRNA-mediated loss of Pol ß expression in human breast cancer cells increases cellular sensitivity to temozolomide. Resistance to temozolomide is restored by complementation of either wild-type human Pol ß or human Pol ß with an inactivating mutation specific to the polymerase active site yet functional for 5′dRP lyase activity. These genetic and cellular studies uniquely demonstrate that over-expression of MPG causes an imbalance in BER leading to an accumulation of cytotoxic 5′dRP lesions and that the 5′dRP lyase activity of Pol ß is required to restore resistance to temozolomide. These results imply that Pol ß dependent 5′dRP lyase activity is the rate-limiting step in BER in these cells and suggests that BER is a tightly balanced pathway for the repair of alkylated bases such as N7-MeG and N3-MeA. Further, we find that 5′dRP-mediated cell death is independent of caspase-3 activation and does not induce the formation of autophagosomes, as measured by GFP-LC3 localization. The experiments presented herein suggest that it will be important to investigate whether an active BER pathway could be partially responsible for the temozolomide-mediated resistance seen in some tumors and that balanced BER protein expression and overall BER capacity may help predict sensitivity to temozolomide. PMID:18477668

Model year 2002 fuel economy guide

DOT National Transportation Integrated Search

2001-01-01

The Fuel Economy Guide is published by the U.S. Department of Energy as an aid to consumers considering the purchase of a new vehicle. The Guide lists estimates of miles per gallon (mpg) for each vehicle available for the new model year. The Guide is...

Advanced Automotive Diesel Assessment Program, executive summary

NASA Technical Reports Server (NTRS)

1983-01-01

The objectives of this analytical study were: to select one advanced automotive diesel engine (AAD) concept which would increase the tank mileage of a 3,000 pound passenger car from the present 35 mpg to at least 52 mpg; to identify long term component research and development work required to bring the selected concept to fruition; and to prepare a development strategy that will bring the selected concept to a prototype testing phase. Cummins Engine Company has completed this study. The selected concept is a 4 stroke cycle, direct injection, spark assisted, advanced adiabatic diesel engine with positive displacement compounding plus expander and part load air preheating. The engine does not use a liquid coolant nor liquid lubricants. It is a 4 cylinder, in-line, 77 mm bore x 77 mm stroke, 1.434 liters displacement engine weighing 300 lb, and rated at 70 BHP at 3000 rpm. Installation dimensions are 621 mm length x 589 mm width x 479 mm height (24.4 inch x 22 inch x 18.9 inch).

Carbon nitride supported Fe2 cluster catalysts with superior performance for alkene epoxidation.

PubMed

Tian, Shubo; Fu, Qiang; Chen, Wenxing; Feng, Quanchen; Chen, Zheng; Zhang, Jian; Cheong, Weng-Chon; Yu, Rong; Gu, Lin; Dong, Juncai; Luo, Jun; Chen, Chen; Peng, Qing; Draxl, Claudia; Wang, Dingsheng; Li, Yadong

2018-06-15

Sub-nano metal clusters often exhibit unique and unexpected properties, which make them particularly attractive as catalysts. Herein, we report a "precursor-preselected" wet-chemistry strategy to synthesize highly dispersed Fe 2 clusters that are supported on mesoporous carbon nitride (mpg-C 3 N 4 ). The obtained Fe 2 /mpg-C 3 N 4 sample exhibits superior catalytic performance for the epoxidation of trans-stilbene to trans-stilbene oxide, showing outstanding selectivity of 93% at high conversion of 91%. Molecular oxygen is the only oxidant and no aldehyde is used as co-reagent. Under the same condition, by contrast, iron porphyrin, single-atom Fe, and small Fe nanoparticles (ca. 3 nm) are nearly reactively inert. First-principles calculations reveal that the unique reactivity of the Fe 2 clusters originates from the formation of active oxygen species. The general applicability of the synthesis approach is further demonstrated by producing other diatomic clusters like Pd 2 and Ir 2 , which lays the foundation for discovering diatomic cluster catalysts.

Advanced automotive diesel assessment program

NASA Technical Reports Server (NTRS)

Sekar, R.; Tozzi, L.

1983-01-01

Cummins Engine Company completed an analytical study to identify an advanced automotive (light duty) diesel (AAD) power plant for a 3,000-pound passenger car. The study resulted in the definition of a revolutionary diesel engine with several novel features. A 3,000-pound car with this engine is predicted to give 96.3, 72.2, and 78.8 MPG in highway, city, and combined highway-city driving, respectively. This compares with current diesel powered cars yielding 41.7, 35.0, and 37.7 MPG. The time for 0-60 MPH acceleration is 13.9 sec. compared to the baseline of 15.2 sec. Four technology areas were identified as crucial in bringing this concept to fruition. They are: (1) part-load preheating, (2) positive displacement compounding, (3) spark assisted diesel combustion system, and (4) piston development for adiabatic, oilless diesel engine. Marketing and planning studies indicate that an aggressive program with significant commitment could result in a production car in 10 years from the date of commencement.

TADtool: visual parameter identification for TAD-calling algorithms.

PubMed

Kruse, Kai; Hug, Clemens B; Hernández-Rodríguez, Benjamín; Vaquerizas, Juan M

2016-10-15

Eukaryotic genomes are hierarchically organized into topologically associating domains (TADs). The computational identification of these domains and their associated properties critically depends on the choice of suitable parameters of TAD-calling algorithms. To reduce the element of trial-and-error in parameter selection, we have developed TADtool: an interactive plot to find robust TAD-calling parameters with immediate visual feedback. TADtool allows the direct export of TADs called with a chosen set of parameters for two of the most common TAD calling algorithms: directionality and insulation index. It can be used as an intuitive, standalone application or as a Python package for maximum flexibility. TADtool is available as a Python package from GitHub (https://github.com/vaquerizaslab/tadtool) or can be installed directly via PyPI, the Python package index (tadtool). kai.kruse@mpi-muenster.mpg.de, jmv@mpi-muenster.mpg.deSupplementary information: Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press.

A study of the gas-star formation relation over cosmic time

NASA Astrophysics Data System (ADS)

Genzel, R.; Tacconi, L. J.; Gracia-Carpio, J.; Sternberg, A.; Cooper, M. C.; Shapiro, K.; Bolatto, A.; Bouché, N.; Bournaud, F.; Burkert, A.; Combes, F.; Comerford, J.; Cox, P.; Davis, M.; Schreiber, N. M. Förster; Garcia-Burillo, S.; Lutz, D.; Naab, T.; Neri, R.; Omont, A.; Shapley, A.; Weiner, B.

2010-10-01

We use the first systematic data sets of CO molecular line emission in z ~ 1-3 normal star-forming galaxies (SFGs) for a comparison of the dependence of galaxy-averaged star formation rates on molecular gas masses at low and high redshifts, and in different galactic environments. Although the current high-z samples are still small and biased towards the luminous and massive tail of the actively star-forming `main-sequence', a fairly clear picture is emerging. Independent of whether galaxy-integrated quantities or surface densities are considered, low- and high-z SFG populations appear to follow similar molecular gas-star formation relations with slopes 1.1 to 1.2, over three orders of magnitude in gas mass or surface density. The gas-depletion time-scale in these SFGs grows from 0.5 Gyr at z ~ 2 to 1.5 Gyr at z ~ 0. The average corresponds to a fairly low star formation efficiency of 2 per cent per dynamical time. Because star formation depletion times are significantly smaller than the Hubble time at all redshifts sampled, star formation rates and gas fractions are set by the balance between gas accretion from the halo and stellar feedback. In contrast, very luminous and ultraluminous, gas-rich major mergers at both low and high z produce on average four to 10 times more far-infrared luminosity per unit gas mass. We show that only some fraction of this difference can be explained by uncertainties in gas mass or luminosity estimators; much of it must be intrinsic. A possible explanation is a top-heavy stellar mass function in the merging systems but the most likely interpretation is that the star formation relation is driven by global dynamical effects. For a given mass, the more compact merger systems produce stars more rapidly because their gas clouds are more compressed with shorter dynamical times, so that they churn more quickly through the available gas reservoir than the typical normal disc galaxies. When the dependence on galactic dynamical time-scale is explicitly included, disc galaxies and mergers appear to follow similar gas-to-star formation relations. The mergers may be forming stars at slightly higher efficiencies than the discs. Based on observations with the Plateau de Bure millimetre interferometre, operated by the Institute for Radio Astronomy in the Millimetre Range (IRAM), which is funded by a partnership of INSU/CNRS (France), MPG (Germany) and IGN (Spain). E-mail: genzel@mpe.mpg.de; linda@mpe.mpg.de ‡ Spitzer Fellow. § MPG-Fellow at MPE.

Genetics and Genomics

USDA-ARS?s Scientific Manuscript database

Good progress is being made on genetics and genomics of sugar beet, however it is in process and the tools are now being generated and some results are being analyzed. The GABI BeetSeq project released a first draft of the sugar beet genome of KWS2320, a dihaploid (see http://bvseq.molgen.mpg.de/Gen...

GROND followup of ASASSN-17gu/AT2017eip

NASA Astrophysics Data System (ADS)

Chen, Ting-Wan; Chen, Tau

2017-05-01

We observed the field of ASASSN-17gu/AT2017eip (Stone et al, ATel #10431) simultaneously in g'r'i'z'JHK with GROND (Greiner et al. 2008, PASP 120, 405) mounted at the 2.2m MPG telescope at the ESO La Silla Observatory (Chile).

49 CFR Appendix A to Part 533 - Example of Calculating Compliance Under § 533.5 Paragraph (g)

Code of Federal Regulations, 2010 CFR

2010-10-01

... comply with the CAFE standard for MY 2012 as set forth in section 533.5(i). ER06AP06.041 Note to Appendix... to its required fuel economy level of 23.1 mpg, Manufacturer X complies with the Reformed CAFE...

40 CFR 600.510-08 - Calculation of average fuel economy.

Code of Federal Regulations, 2011 CFR

2011-07-01

... Regulations for Model Year 1978 Passenger Automobiles and for 1979 and Later Model Year Automobiles (Light Trucks and Passenger Automobiles)-Procedures for Determining Manufacturer's Average Fuel Economy and...) Average fuel economy will be calculated to the nearest 0.1 mpg for the classes of automobiles identified...

40 CFR 600.510-86 - Calculation of average fuel economy.

Code of Federal Regulations, 2011 CFR

2011-07-01

... Regulations for Model Year 1978 Passenger Automobiles and for 1979 and Later Model Year Automobiles (Light Trucks and Passenger Automobiles)-Procedures for Determining Manufacturer's Average Fuel Economy and...) Average fuel economy will be calculated to the nearest 0.1 mpg for the classes of automobiles identified...

40 CFR 600.510-93 - Calculation of average fuel economy.

Code of Federal Regulations, 2011 CFR

2011-07-01

... Regulations for Model Year 1978 Passenger Automobiles and for 1979 and Later Model Year Automobiles (Light Trucks and Passenger Automobiles)-Procedures for Determining Manufacturer's Average Fuel Economy and...) Average fuel economy will be calculated to the nearest 0.1 mpg for the classes of automobiles identified...

49 CFR Appendix A to Part 533 - Example of Calculating Compliance Under § 533.5 Paragraph (g)

Code of Federal Regulations, 2011 CFR

2011-10-01

... comply with the CAFE standard for MY 2012 as set forth in section 533.5(i). ER06AP06.041 Note to Appendix... to its required fuel economy level of 23.1 mpg, Manufacturer X complies with the Reformed CAFE...

The loess-paleosol profile Datthausen, on the penultimate-glacial terrace of the upper Danube River: Luminescence dating and interpretation

NASA Astrophysics Data System (ADS)

Kadereit, Annette; Sauer, Daniela; Kühn, Peter; Herrmann, Ludger; Kösel, Michael; Miller, Christopher; Shinonaga, Taeko; Kreutzer, Sebastian; Starkovich, Britt

2015-04-01

The loess-paleosol profile Datthausen is situated on the penultimate-glacial (Würmian) terrace of the upper Danube River in southern Germany. The sequence of reworked, mostly sandy loess deposits exhibits brownish, loamy paleosols in its lower part and slightly de-carbonated and hydromorphic horizons in its upper part. The stratigraphic bisection is interpreted as the transition from the terrestrial Middle Pleniglacial (Middle Würmian) to the Upper Pleniglacial (Upper Würmian). This interpretation is supported by the observation that the upper two of the loamy paleosols show an olive tint and features of sediment reworking at the top (see Sauer et al. in this session). A similar stratigraphic pattern was observed in other central European loess-paleosol sections (Schönhals et al. 1964, E&G 15: 199-206) and was recently corroborated for, e.g., Nussloch on the Upper Rhine and Schwalbenberg II on the Middle Rhine (Antoine et al. 2009, QSR 28: 2955-2973; Schirmer 2012, E&G 61: 32-47). However, the chronometric position of the terrestrial Middle Pleniglacial to Upper Pleniglacial (MPG/UPG) transition is still under debate, as are the palaeoclimatic triggers controlling loess and soil formation. Valuable information hereon may be gained by matching the terrestrial chronologies with the marine and Greenland ice-core records. The chronometry of the Datthausen section is based on blue-light stimulated luminescence (BLSL) dating of small aliquots (ca. 200-500 grains) of quartz coarse grains (125-212 µm), using a single-aliquot regeneration (SAR) protocol (Murray & Wintle 2000, Rad. Meas. 32: 57-73) and a minimum-age model (Galbraith et al. 1999, Archaeometry 41: 339-364). Formation of the paleosols was likely promoted during the warmer Greenland Interstadials (GIS). Luminescence dating on samples taken from these paleosols determines the time of sediment deposition that preceded the soil formation in the respective sediment. We sampled two horizons below and three horizons above the MPG/UPG-boundary. A BLSL-age around ca. 37-35 ka for the lowermost sampled paleosol (6Bg5) suggests soil formation during a period matching GIS7 to GIS5. Therefore, the paleosol could conform to the Lohne Soil at Nussloch and Schwalbenberg II. A BLSL-age around ca. 29 ka for the uppermost MPG-palaeosol (5Bg4) may indicate soil formation during GIS4 or GIS3. Fragments of snail shells in the lowermost dated UPG-horizon (3Bw1) point to a reworked soil sediment. BLSL-dating yielded an age around ca. 26-27 ka. Therefore, at Datthausen the MPG/UPG transition appears to conform to the transition from marine/oxygen isotope stage (MIS/OIS) 3 to 2. De-carbonated horizon 2Bg1 (around ca. 23 ka) may possibly match GIS2. Hydromorphic horizon Cg2 (around ca. 22 ka) fits in a later period of the last glacial maximum (LGM). Correlations between the loess-paleosol sequence and ice-core records are challenging as the luminescence ages have uncertainties of ca. 10 % (1-sigma). Further, the sediments appear partially bleached and, partly affected by bio- or cryturbation. Overall, the chronometry fits to the field observations and the results of the pedological analyses, but the MPG/UPG transition appears to start slightly later than at Nussloch and Schwalbenberg II, where it precedes the MIS3/MIS2 boundary.

40 CFR 600.311-12 - Determination of values for fuel economy labels.

Code of Federal Regulations, 2014 CFR

2014-07-01

... value from paragraph (a) of this section, in miles per kW-hour. (4) For hydrogen fuel cell vehicles... for hydrogen fuel cell vehicles. MPG = The combined fuel economy value from paragraph (a) of this... hydrogen fuel cell vehicles. Average Annual Miles = The estimated annual mileage figure provided by EPA, in...

40 CFR 600.311-12 - Determination of values for fuel economy labels.

Code of Federal Regulations, 2013 CFR

2013-07-01

... value from paragraph (a) of this section, in miles per kW-hour. (4) For hydrogen fuel cell vehicles... for hydrogen fuel cell vehicles. MPG = The combined fuel economy value from paragraph (a) of this... hydrogen fuel cell vehicles. Average Annual Miles = The estimated annual mileage figure provided by EPA, in...

40 CFR 600.510-12 - Calculation of average fuel economy and average carbon-related exhaust emissions.

Code of Federal Regulations, 2011 CFR

2011-07-01

... MOTOR VEHICLES Fuel Economy Regulations for Model Year 1978 Passenger Automobiles and for 1979 and Later Model Year Automobiles (Light Trucks and Passenger Automobiles)-Procedures for Determining Manufacturer... will be calculated to the nearest 0.1 mpg for the categories of automobiles identified in this section...

BMP2 induces PANC-1 cell invasion by MMP-2 overexpression through ROS and ERK.

PubMed

Liu, Jun; Ben, Qi-Wen; Yao, Wei-Yan; Zhang, Jian-Jun; Chen, Da-Fan; He, Xiang-Yi; Li, Lei; Yuan, Yao-Zong

2012-06-01

The emerging roles of bone morphogenetic proteins (BMPs) in the initiation and progression of multiple cancers have drawn great attention in cancer research. We hypothesized that BMP2 promotes cancer metastasis by modulating MMP-2 secretion and activity through intracellular ROS regulation and ERK activation in human pancreatic cancer. Our data show that stimulation of PANC-1 cells with BMP2 induced MMP-2 secretion and activation, associated with decreased E-cadherin expression, resulting in epithelial-to-mesenchymal transformation (EMT) and cell invasion. Blockade of ROS by the ROS scavenger, 2-MPG, abolished cell invasion, inhibited the EMT process and decreased MMP-2 expression, suggesting ROS accumulation caused an increase in MMP-2 expression in BMP2-stimulated PANC-1 cell invasion. Furthermore, treatment of PANC-1 cells with 2-MPG or ERK inhibitor PD98059 reduced the phosphorylation of ERK, resulting in attenuation of BMP2-induced cell invasion and MMP-2 activation. Taken together, these results suggest that BMP2 induces the cell invasion of PANC-1 cells by enhancing MMP-2 secretion and acting through ROS accumulation and ERK activation.

Energy conservation through utilization of mechanical energy storage

NASA Astrophysics Data System (ADS)

Eisenhaure, D. B.; Bliamptis, T. E.; Downer, J. R.; Heinemann, P. C.

Potential benefits regarding fuel savings, necessary technology, and evaluation criteria for the development of flywheel-hybrid vehicles are examined. A case study is quoted in which adoption of flywheel-hybrid vehicles in a taxi fleet would result in an increase of 10 mpg average to 32 mpg. Two proposed systems are described, one involving direct engine power to the flywheel and the second regenerating the flywheel from braking energy through a continuously variable transmission. Fuel consumption characteristics are considered the ultimate determinant in the choice of configuration, while material properties and housing shape determine the flywheel speed range. Vehicle losses are characterized and it is expected that a flywheel at 12,000 rpm will experience less than one hp average parasitic power loss. Flywheel storage is suitable for smaller engines because larger engines dominate the power train mass. Areas considered important for further investigation include reliability of an engine run near maximum torque, noise and vibration associated with flywheel operation, start up delays, compatibility of driver controls, integration of normal with regenerative braking systems, and, most importantly, the continuously variable transmission.

Hydrodynamic endurance test of the prosthetic valve used in the various types of the ventricular assist device.

PubMed

Nitta, S; Yambe, T; Katahira, Y; Sonobe, T; Saijoh, Y; Naganuma, S; Akiho, H; Kakinuma, Y; Tanaka, M; Miura, M

1991-12-01

To evaluate the various basic designs of the pump chambers used in the ventricular assist devices (VADs), hydrodynamic endurance test was performed from the viewpoint of the durability of the prosthetic valves used in the VAD. For the hydrodynamic analysis, we designed three basic types of pump (sac type, diaphragm type, and pusher plate type) using the same material and having the same capacity and shape. Prosthetic valves in these VADs were tested from the standpoint of the water hammer effect, which affects the valve durability, to determine which pump design would be most durable as a prosthetic valve in the VAD. The water-hammer phenomenon was evaluated using the maximum pressure gradient (MPG) across the prosthetic valve in the moc circulatory loop. Maximum pump output was recorded when we used the diaphragm type model, and minimum MPG in the commonly used driving condition of the VAD were recorded when we used the sac type model. The results suggest that the sac type VAD model is the most durable design for the prosthetic value.

Urine testing to monitor the impact of HPV vaccination in Bhutan and Rwanda.

PubMed

Franceschi, Silvia; Chantal Umulisa, M; Tshomo, Ugyen; Gheit, Tarik; Baussano, Iacopo; Tenet, Vanessa; Tshokey, Tshokey; Gatera, Maurice; Ngabo, Fidele; Van Damme, Pierre; Snijders, Peter J F; Tommasino, Massimo; Vorsters, Alex; Clifford, Gary M

2016-08-01

Bhutan (2010) and Rwanda (2011) were the first countries in Asia and Africa to introduce national, primarily school-based, human papillomavirus (HPV) vaccination programmes. These target 12 year-old girls and initially included catch-up campaigns (13-18 year-olds in Bhutan and ninth school grade in Rwanda). In 2013, to obtain the earliest indicators of vaccine effectiveness, we performed two school-based HPV urine surveys; 973 female students (median age: 19 years, 5th-95th percentile: 18-22) were recruited in Bhutan and 912 (19 years, 17-20) in Rwanda. Participants self-collected a first-void urine sample using a validated protocol. HPV prevalence was obtained using two PCR assays that differ in sensitivity and type spectrum, namely GP5+/GP6+ and E7-MPG. 92% students in Bhutan and 43% in Rwanda reported to have been vaccinated (median vaccination age = 16, 5th-95th: 14-18). HPV positivity in urine was significantly associated with sexual activity measures. In Rwanda, HPV6/11/16/18 prevalence was lower in vaccinated than in unvaccinated students (prevalence ratio, PR = 0.12, 95% confidence interval, CI: 0.03-0.51 by GP5+/GP6+, and 0.45, CI: 0.23-0.90 by E7-MPG). For E7-MPG, cross-protection against 10 high-risk types phylogenetically related to HPV16 or 18 was of borderline significance (PR = 0.68; 95% CI: 0.45-1.01). In Bhutan, HPV6/11/16/18 prevalence by GP5+/GP6+ was lower in vaccinated than in unvaccinated students but CIs were broad. In conclusion, our study supports the feasibility of urine surveys to monitor HPV vaccination and quantifies the effectiveness of the quadrivalent vaccine in women vaccinated after pre-adolescence. Future similar surveys should detect increases in vaccine effectiveness if vaccination of 12 year-olds continues. © 2016 UICC.

Manipulating the motion of large molecules: Information from the molecular frame

NASA Astrophysics Data System (ADS)

Küpper, Jochen

2011-05-01

Large molecules have complex potential-energy surfaces with many local minima. They exhibit multiple stereoisomers, even at the low temperatures (~1 K) in a molecular beam, with rich intra- and intermolecular dynamics. Over the last years, we have developed methods to manipulate the motion of large, complex molecules and to select their quantum states. We have exploited this state-selectivity, for example, to spatially separate individual structural isomers of complex molecules and to demonstrate unprecedented degrees of laser alignment and mixed-field orientation of these molecules. Such clean, well-defined samples strongly benefit, or simply allow, novel experiments on the dynamics of complex molecules, for instance, femtosecond pump-probe measurements, X-ray or electron diffraction of molecular ensembles (including diffraction-from-within experiments), or tomographic reconstructions of molecular orbitals. These samples could also be very advantageous for metrology applications, such as, for example, matter-wave interferometry or the search for electroweak interactions in chiral molecules. Moreover, they provide an extreme level of control for stereo-dynamically controlled reaction dynamics. We have recently exploited these state-selected and oriented samples to measure photoelectron angular distributions in the molecular frame (MFPADs) from non-resonant femtosecond-laser photoionization and using the X-ray Free-Electron-Laser LCLS. We have also investigated X-ray diffraction imaging and, using ion momentum imaging, the induced radiation damage of these samples using the LCLS. This work was carried out within a collaboration for which J. Küpper, H. Chapman, and D. Rolles are spokespersons. The collaboration consists of CFEL (DESY, MPG, University Hamburg), Fritz-Haber-Institute Berlin, MPI Nuclear Physics Heidelberg, MPG Semi-conductor Lab, Aarhus University, FOM AMOLF Amsterdam, Lund University, MPI Medical Research Heidelberg, TU Berlin, Max Born Institute Berlin, and SLAC Menlo Park, CA, USA. The experiments were carried out using CAMP (designed and built by the MPG-ASG at CFEL) at the LCLS (operated by Stanford University on behalf of the US DOE).

Echocardiography underestimates stroke volume and aortic valve area: implications for patients with small-area low-gradient aortic stenosis.

PubMed

Chin, Calvin W L; Khaw, Hwan J; Luo, Elton; Tan, Shuwei; White, Audrey C; Newby, David E; Dweck, Marc R

2014-09-01

Discordance between small aortic valve area (AVA; < 1.0 cm(2)) and low mean pressure gradient (MPG; < 40 mm Hg) affects a third of patients with moderate or severe aortic stenosis (AS). We hypothesized that this is largely due to inaccurate echocardiographic measurements of the left ventricular outflow tract area (LVOTarea) and stroke volume alongside inconsistencies in recommended thresholds. One hundred thirty-three patients with mild to severe AS and 33 control individuals underwent comprehensive echocardiography and cardiovascular magnetic resonance imaging (MRI). Stroke volume and LVOTarea were calculated using echocardiography and MRI, and the effects on AVA estimation were assessed. The relationship between AVA and MPG measurements was then modelled with nonlinear regression and consistent thresholds for these parameters calculated. Finally the effect of these modified AVA measurements and novel thresholds on the number of patients with small-area low-gradient AS was investigated. Compared with MRI, echocardiography underestimated LVOTarea (n = 40; -0.7 cm(2); 95% confidence interval [CI], -2.6 to 1.3), stroke volumes (-6.5 mL/m(2); 95% CI, -28.9 to 16.0) and consequently, AVA (-0.23 cm(2); 95% CI, -1.01 to 0.59). Moreover, an AVA of 1.0 cm(2) corresponded to MPG of 24 mm Hg based on echocardiographic measurements and 37 mm Hg after correction with MRI-derived stroke volumes. Based on conventional measures, 56 patients had discordant small-area low-gradient AS. Using MRI-derived stroke volumes and the revised thresholds, a 48% reduction in discordance was observed (n = 29). Echocardiography underestimated LVOTarea, stroke volume, and therefore AVA, compared with MRI. The thresholds based on current guidelines were also inconsistent. In combination, these factors explain > 40% of patients with discordant small-area low-gradient AS. Copyright © 2014 Canadian Cardiovascular Society. Published by Elsevier Inc. All rights reserved.

Self-bunching electron guns

NASA Astrophysics Data System (ADS)

Mako, Frederick M.; Len, L. K.

1999-05-01

We report on three electron gun projects that are aimed at power tube and injector applications. The purpose of the work is to develop robust electron guns which produce self-bunched, high-current-density beams. We have demonstrated, in a microwave cavity, self-bunching, cold electron emission, long life, and tolerance to contamination. The cold process is based on secondary electron emission. FMT has studied using simulation codes the resonant bunching process which gives rise to high current densities (0.01-5 kA/cm2), high charge bunches (up to 500 nC/bunch), and short pulses (1-100 ps) for frequencies from 1 to 12 GHz. The beam pulse width is nominally ˜5% of the rf period. The first project is the L-Band Micro-Pulse Gun (MPG). Measurements show ˜40 ps long micro-bunches at ˜20 A/cm2 without contamination due to air exposure. Lifetime testing has been carried out for about 18 months operating at 1.25 GHz for almost 24 hours per day at a repetition rate of 300 Hz and 5 μs-long macro-pulses. Approximately 5.8×1013 micro-bunches or 62,000 coulombs have passed through this gun and it is still working fine. The second project, the S-Band MPG, is now operational. It is functioning at a frequency of 2.85 GHz, a repetition rate of 30 Hz, with a 2 μs-long macro-pulse. It produces about 45 A in the macro-pulse. The third project is a 34.2 GHz frequency-multiplied source driven by an X-Band MPG. A point design was performed at an rf output power of 150 MW at 34.2 GHz. The resulting system efficiency is 53% and the gain is 60 dB. The system efficiency includes the input cavity efficiency, input driver efficiency (a 50 MW klystron at 11.4 GHz), output cavity efficiency, and the post-acceleration efficiency.

Patterns of amino acid conservation in human and animal immunodeficiency viruses.

PubMed

Voitenko, Olga S; Dhroso, Andi; Feldmann, Anna; Korkin, Dmitry; Kalinina, Olga V

2016-09-01

Due to their high genomic variability, RNA viruses and retroviruses present a unique opportunity for detailed study of molecular evolution. Lentiviruses, with HIV being a notable example, are one of the best studied viral groups: hundreds of thousands of sequences are available together with experimentally resolved three-dimensional structures for most viral proteins. In this work, we use these data to study specific patterns of evolution of the viral proteins, and their relationship to protein interactions and immunogenicity. We propose a method for identification of two types of surface residues clusters with abnormal conservation: extremely conserved and extremely variable clusters. We identify them on the surface of proteins from HIV and other animal immunodeficiency viruses. Both types of clusters are overrepresented on the interaction interfaces of viral proteins with other proteins, nucleic acids or low molecular-weight ligands, both in the viral particle and between the virus and its host. In the immunodeficiency viruses, the interaction interfaces are not more conserved than the corresponding proteins on an average, and we show that extremely conserved clusters coincide with protein-protein interaction hotspots, predicted as the residues with the largest energetic contribution to the interaction. Extremely variable clusters have been identified here for the first time. In the HIV-1 envelope protein gp120, they overlap with known antigenic sites. These antigenic sites also contain many residues from extremely conserved clusters, hence representing a unique interacting interface enriched both in extremely conserved and in extremely variable clusters of residues. This observation may have important implication for antiretroviral vaccine development. A Python package is available at https://bioinf.mpi-inf.mpg.de/publications/viral-ppi-pred/ voitenko@mpi-inf.mpg.de or kalinina@mpi-inf.mpg.de Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Development of novel recombinant biomimetic chimeric MPG-based peptide as nanocarriers for gene delivery: Imitation of a real cargo.

PubMed

Majidi, Asia; Nikkhah, Maryam; Sadeghian, Faranak; Hosseinkhani, Saman

2016-10-01

In last decades great efforts have been devoted to the study of development of recombinant peptide based vectors that consist of biological motifs with potential applications in gene therapy. Recombinant Biomimetic Chimeric Vectors (rBCVs) are biopolymeric nanocarriers that are designed to mimic viral features to overcome the cellular obstacles in gene transferring pathway into cell nucleus. In this research, we designed and genetically engineered three novel rBCVs with similar sequences that differed in motifs arrangement and motif abundance: MPG-2H1, 2TMPG-2H1 and 2RMPG-2H1. The MPG as a famous amphipathic cell penetrating peptide is the main segment of these constructs which was studied for the first time in association with truncated histone H1 DNA condensing motif. Through the performance of several physicochemical and biological assays, the rBCVs were remarkably examined regarding transfection efficiency. The main objective of this study is focused on the importance of motif design in transfection efficiency of rBCVs on one hand, and the assessment of correlation between structural features and functionality of motifs on the other hand. The results revealed that all three kinds of rBCVs/pDNA nanoparticles with average sizes of 200nm could overwhelm the cellular obstacles associated with gene transfer, and lead to efficient gene delivery. Furthermore, no significant toxicity was perceived and efficient endosome disruptive activity was obtained. It is noteworthy to say among three mentioned constructs 2RMPG-2H1 showed the highest transfection efficiency. Overall the peptide based vectors hold great promise as a nontoxic and effective gene carrier in vitro and in vivo, besides the rational design possibility as the most vital advantages over the other non-viral gene delivery vectors. Copyright © 2016 Elsevier B.V. All rights reserved.

40 CFR 600.307-08 - Fuel economy label format requirements.

Code of Federal Regulations, 2010 CFR

2010-07-01

....210-08(c), located directly above the arrow. (iv) The statement “This Vehicle” directly above the... “This Vehicle” statement, and centered above the bar, in two lines, if needed. (C) For dedicated natural... alternate fuel, in a size and format specified in Appendix V of this part. (c) The city mpg number shall be...

40 CFR 600.307-08 - Fuel economy label format requirements.

Code of Federal Regulations, 2011 CFR

2011-07-01

....210-08(c), located directly above the arrow. (iv) The statement “This Vehicle” directly above the... “This Vehicle” statement, and centered above the bar, in two lines, if needed. (C) For dedicated natural... alternate fuel, in a size and format specified in appendix V of this part. (c) The city mpg number shall be...

Sensor development at the semiconductor laboratory of the Max-Planck-Society

NASA Astrophysics Data System (ADS)

Bähr, A.; Lechner, P.; Ninkovic, J.

2017-12-01

For more than twenty years the semiconductor laboratory of the Max-Planck Society (MPG-HLL) is developing high-performing, specialised, scientific silicon sensors including the integration of amplifying electronics on the sensor chip. This paper summarises the actual status of these devices like pnCCDs and DePFET Active Pixel Sensors and their applications.

Delft University at the TREC 2009 Entity Track: Ranking Wikipedia Entities

DTIC Science & Technology

2009-11-01

2http://www.mpi-inf.mpg.de/ yago -naga/ 3http://dbpedia.org/ontology/ 4.4.2 Using infoboxes, Yago and Wordnet Since only a limited number of Wikipedia...sources: properties specified in the infobox of al- most every article (around 1,750,000), and Wordnet classes assigned by Yago to almost every second

NWEA Recommendations for Transitioning Students from MPG to MAP 2-5

ERIC Educational Resources Information Center

Northwest Evaluation Association, 2014

2014-01-01

In order to determine which test is more appropriate to administer to elementary grade students, it is important to consider the purpose of the test in conjunction with the ability and grade level of the students. Northwest Evaluation Association™ (NWEA™) designed Measures of Academic Progress® (MAP®) tests mindful of the amount of learning that…

Alternative Fuels Data Center: Driving Tips for MPG

Science.gov Websites

Corporation Adds Propane Buses to Its Fleet Nov. 11, 2016 Photo of a man charging a car. Sacramento Powers up with Electric Vehicles Oct. 3, 2016 Photo of a car. Cleveland Car Dealership Working Toward a More Corridor Now Open Feb. 21, 2015 Photo of an electric car. College Students Engineer Efficient Vehicles in

Accounting for aquifer heterogeneity from geological data to management tools.

PubMed

Blouin, Martin; Martel, Richard; Gloaguen, Erwan

2013-01-01

A nested workflow of multiple-point geostatistics (MPG) and sequential Gaussian simulation (SGS) was tested on a study area of 6 km(2) located about 20 km northwest of Quebec City, Canada. In order to assess its geological and hydrogeological parameter heterogeneity and to provide tools to evaluate uncertainties in aquifer management, direct and indirect field measurements are used as inputs in the geostatistical simulations to reproduce large and small-scale heterogeneities. To do so, the lithological information is first associated to equivalent hydrogeological facies (hydrofacies) according to hydraulic properties measured at several wells. Then, heterogeneous hydrofacies (HF) realizations are generated using a prior geological model as training image (TI) with the MPG algorithm. The hydraulic conductivity (K) heterogeneity modeling within each HF is finally computed using SGS algorithm. Different K models are integrated in a finite-element hydrogeological model to calculate multiple transport simulations. Different scenarios exhibit variations in mass transport path and dispersion associated with the large- and small-scale heterogeneity respectively. Three-dimensional maps showing the probability of overpassing different thresholds are presented as examples of management tools. © 2012, The Author(s). Groundwater © 2012, National Ground Water Association.

Near-term hybrid vehicle program, phase 1. Appendix B: Design trade-off studies. [various hybrid/electric power train configurations and electrical and mechanical drive-line components

NASA Technical Reports Server (NTRS)

1979-01-01

The relative attractiveness of various hybrid/electric power train configurations and electrical and mechanical drive-line components was studied. The initial screening was concerned primarily with total vehicle weight and economic factors and identified the hybrid power train combinations which warranted detailed evaluation over various driving cycles. This was done using a second-by-second vehicle simulation program which permitted the calculations of fuel economy, electricity usage, and emissions as a function of distance traveled in urban and highway driving. Power train arrangement possibilities were examined in terms of their effect on vehicle handling, safety, serviceability, and passenger comfort. A dc electric drive system utilizing a separately excited motor with field control and battery switching was selected for the near term hybrid vehicle. Hybrid vehicle simulations showed that for the first 30 mi (the electric range of the vehicle) in urban driving, the fuel economy was 80 mpg using a gasoline engine and 100 mpg using a diesel engine. In urban driving the hybrid would save about 75% of the fuel used by the conventional vehicle and in combined urban/highway driving the fuel saving is about 50%.

Free-piston Stirling hydraulic engine and drive system for automobiles

NASA Technical Reports Server (NTRS)

Beremand, D. G.; Slaby, J. G.; Nussle, R. C.; Miao, D.

1982-01-01

The calculated fuel economy for an automotive free piston Stirling hydraulic engine and drive system using a pneumatic accumulator with the fuel economy of both a conventional 1980 spark ignition engine in an X body class vehicle and the estimated fuel economy of a 1984 spark ignition vehicle system are compared. The results show that the free piston Stirling hydraulic system with a two speed transmission has a combined fuel economy nearly twice that of the 1980 spark ignition engine - 21.5 versus 10.9 km/liter (50.7 versus 25.6 mpg) under comparable conditions. The fuel economy improvement over the 1984 spark ignition engine was 81 percent. The fuel economy sensitivity of the Stirling hydraulic system to system weight, number of transmission shifts, accumulator pressure ratio and maximum pressure, auxiliary power requirements, braking energy recovery, and varying vehicle performance requirements are considered. An important finding is that a multispeed transmission is not required. The penalty for a single speed versus a two speed transmission is about a 12 percent drop in combined fuel economy to 19.0 km/liter (44.7 mpg). This is still a 60 percent improvement in combined fuel economy over the projected 1984 spark ignition vehicle.

Flow pattern in the ventricle of brain with cilia beating and CSF circulation

NASA Astrophysics Data System (ADS)

Wang, Yong; Westendorf, Christian; Faubel, Regina; Eichele, Gregor; Bodenschatz, Eberhard

We recently discovered that cilia of the ventral third ventricle (v3V) of mammalian brain generate a complex flow network close to the wall. However, the flow pattern in the overall three dimensional v3V, especially under physiological condition, remains to be investigated. Computational fluid dynamics is arguably the best approach for such investigations. Several v3V geometries are reconstructed from different data for comparison study. The lattice Boltzmann method and immersed boundary method are used to reproduce the experimental set-up for an opened v3V firstly. The experimentally recorded cilia induced flow network is projected on the curved v3V wall. The flow maps obtained numerically at different heights from the v3V wall agree with the experimental data qualitatively. We then consider the entire v3V with ciliary flow network along the wall for boundary condition. Moreover, we add a time dependent flow rate to represent the CSF circulation, and study flow pattern in the ventricle. We thank the Max Planck Society (MPG) for financial support. This work is conducted within the Physics and Medicine Initiative at Goettingen Campus between MPG and University Medical Center.

History of EISCAT - Part 4: On the German contribution to the early years of EISCAT

NASA Astrophysics Data System (ADS)

Haerendel, Gerhard

2016-07-01

The decision of the Max Planck Society (MPG) to get involved in the establishment of an incoherent scatter radar in northern Europe was intimately linked to the future of the Max Planck Institute for Aeronomy (MPAe) in Katlenburg-Lindau. Delegates of the MPG played an important role in defining the rules for participation in EISCAT during the period from 1973 to 1975. The "technical" period from 1976 to 1981 was mainly devoted to the development of the UHF transmitter and the klystrons. The latter encountered great difficulties, causing substantial delays. During the same period the ionospheric heating facility was established by MPAe at Ramfjordmoen, Norway. The period following the inauguration in August 1981 saw a great number of changes in the leading personnel. In this context much attention had to be given to taxation rules. Besides continuing hardware problems with the UHF radar, severe problems arose with design and manufacturing of the VHF klystrons, requiring changes of the contractor. However, by fall of 1983 the UHF radar was able to reach the intended operational level. In 1984 important steps were made for archiving and for proper exploitation of the EISCAT data.

West Philly Hybrid X Team

NASA Image and Video Library

2010-06-06

NASA Chief Technologist Bobby Braun talks with student members of the West Philly Hybrid X Team at West Philadelphia High School in Philadelphia, Monday, June 7, 2010. The prize-winning West Philly Hybrid X Team has drawn international recognition as the only high school among 22 finalists in the Progressive Insurance Automotive X Prize (PIAXP) competition to develop cars that achieve over 100 MPG. Photo Credit: (NASA/Bill Ingalls)

Perceptual variation in umami taste and polymorphisms in TAS1R taste receptor genes1234

PubMed Central

Chen, Qing-Ying; Alarcon, Suzanne; Tharp, Anilet; Ahmed, Osama M; Estrella, Nelsa L; Greene, Tiffani A; Rucker, Joseph; Breslin, Paul AS

2009-01-01

Background: The TAS1R1 and TAS1R3 G protein–coupled receptors are believed to function in combination as a heteromeric glutamate taste receptor in humans. Objective: We hypothesized that variations in the umami perception of glutamate would correlate with variations in the sequence of these 2 genes, if they contribute directly to umami taste. Design: In this study, we first characterized the general sensitivity to glutamate in a sample population of 242 subjects. We performed these experiments by sequencing the coding regions of the genomic TAS1R1 and TAS1R3 genes in a separate set of 87 individuals who were tested repeatedly with monopotassium glutamate (MPG) solutions. Last, we tested the role of the candidate umami taste receptor hTAS1R1-hTAS1R3 in a functional expression assay. Results: A subset of subjects displays extremes of sensitivity, and a battery of different psychophysical tests validated this observation. Statistical analysis showed that the rare T allele of single nucleotide polymorphism (SNP) R757C in TAS1R3 led to a doubling of umami ratings of 25 mmol MPG/L. Other suggestive SNPs of TAS1R3 include the A allele of A5T and the A allele of R247H, which both resulted in an approximate doubling of umami ratings of 200 mmol MPG/L. We confirmed the potential role of the human TAS1R1-TAS1R3 heteromer receptor in umami taste by recording responses, specifically to l-glutamate and inosine 5′-monophosphate (IMP) mixtures in a heterologous expression assay in HEK (human embryonic kidney) T cells. Conclusions: There is a reliable and valid variation in human umami taste of l-glutamate. Variations in perception of umami taste correlated with variations in the human TAS1R3 gene. The putative human taste receptor TAS1R1-TAS1R3 responds specifically to l-glutamate mixed with the ribonucleotide IMP. Thus, this receptor likely contributes to human umami taste perception. PMID:19587085

Low-Level Outflow Potential of Non-Tornadic Thunderstorms Inferred from Single-Doppler Radar

DTIC Science & Technology

1988-01-01

10) MNGATE(3) , MIGATE (3) ,NFLD,ELCNT, * + BD.ANGE .ERANGE COMMON/PARMS/IVOL,KVOL,SN ,FN COMMON/WNITS! ITJNT, JUN17 ,KUN DIMENSION R01(3) ,DRI(3) ,MPG(3... MIGATE (ILOOP) NO (IOOP) - NXIATE (ILOOP) -MNGITE(ILOOP) +1I!8 FCAGNTINUE E RED(UNI ) AZ 1),NIT DO 1 ILOP-1,NLD DONUNT 58 LOP1,N(IOOP)N K~~~EI UNIT) BICNT

Program Affordability Tradeoffs

DTIC Science & Technology

2016-04-30

engineering, trade -studies, and risk assessment and management for a variety of civilian and DoD sponsors. She holds a master’s degree in mathematics...mph in as little as 2.8 seconds. Prius Model 2 fuel economy (MPG): 54 - 58 city | 50 - 53 highway Trade -Off Analysis Costs: $80,000...affordability trades  What is the impact to goals/missions/objectives of pursuing a lower cost, lower performing alternative? Is this impact

40 CFR 600.510-12 - Calculation of average fuel economy and average carbon-related exhaust emissions.

Code of Federal Regulations, 2013 CFR

2013-07-01

... nearest 0.1 mpg; or (iii) For natural gas-fueled model types, the fuel economy value calculated for that... as determined in § 600.208-12(b)(5)(i). (vi) For natural gas dual fuel model types, for model years... natural gas as determined in § 600.208-12(b)(5)(ii) divided by 0.15 provided the requirements of paragraph...

40 CFR 600.510-12 - Calculation of average fuel economy and average carbon-related exhaust emissions.

Code of Federal Regulations, 2012 CFR

2012-07-01

... paragraph (b)(2) of this section divided by 0.15 and rounded to the nearest 0.1 mpg; or (iii) For natural....15 provided the requirements of paragraph (g) of this section are met; or (v) For natural gas dual... economy value for operation on natural gas as determined in § 600.208-12(b)(5)(ii) divided by 0.15...

40 CFR 600.510-12 - Calculation of average fuel economy and average carbon-related exhaust emissions.

Code of Federal Regulations, 2014 CFR

2014-07-01

... nearest 0.1 mpg; or (iii) For natural gas-fueled model types, the fuel economy value calculated for that... as determined in § 600.208-12(b)(5)(i). (vi) For natural gas dual fuel model types, for model years... natural gas as determined in § 600.208-12(b)(5)(ii) divided by 0.15 provided the requirements of paragraph...

Maximum Power Game as a Physical and Social Extension of Classical Games

NASA Astrophysics Data System (ADS)

Kim, Pilwon

2017-03-01

We consider an electric circuit in which the players participate as resistors and adjust their resistance in pursuit of individual maximum power. The maximum power game(MPG) becomes very complicated in a circuit which is indecomposable into serial/parallel components, yielding a nontrivial power distribution at equilibrium. Depending on the circuit topology, MPG covers a wide range of phenomena: from a social dilemma in which the whole group loses to a well-coordinated situation in which the individual pursuit of power promotes the collective outcomes. We also investigate a situation where each player in the circuit has an intrinsic heat waste. Interestingly, it is this individual inefficiency which can keep them from the collective failure in power generation. When coping with an efficient opponent with small intrinsic resistance, a rather inefficient player gets more power than efficient one. A circuit with multiple voltage inputs forms the network-based maximum power game. One of our major interests is to figure out, in what kind of the networks the pursuit for private power leads to greater total power. It turns out that the circuits with the scale-free structure is one of the good candidates which generates as much power as close to the possible maximum total.

Ceramics for the advanced automotive gas turbine engine: A look at a single shaft design

NASA Technical Reports Server (NTRS)

Nosek, S. M.

1977-01-01

The results of a preliminary analysis of a single shaft regenerative design with a single stage radial turbine are presented to show the fuel economy that can be achieved at high turbine inlet temperatures, with this particular advanced design, if the turbine tip speed and regenerator inlet temperature are not limited. The engine size was 100 hp for application to a 3500 lb auto. The fuel economy was analyzed by coupling the engine to the auto through a continuously variable speed-ratio transmission and operating the system at constant turbine inlet temperature over the Composite Driving Cycle. The fuel was gasoline and the analysis was for a 85 F day. With a turbine inlet temperature of 2500 F the fuel economy was 26.2 mpg, an improvement of 18 percent over that of 22.3 mpg with a turbine inlet temperature of 1900 F. The turbine tip speed needed for best economy with the 2500 F engine was 2530 ft/sec. The regenerator temperature was approximately 2200 F at idle. Disk stresses were estimated for one single stage radial turbine and two two-stage radial-axial turbines and compared with maximum allowable stress curves estimated for a current ceramic material. Results show a need for higher Weibull Modulus, higher strength ceramics.

Advanced oxidation process-biological system for wastewater containing a recalcitrant pollutant.

PubMed

Oller, I; Malato, S; Sánchez-Pérez, J A; Maldonado, M I; Gernjak, W; Pérez-Estrada, L A

2007-01-01

Two advanced oxidation processes (AOPs), ozonation and photo-Fenton, combined with a pilot aerobic biological reactor at field scale were employed for the treatment of industrial non-biodegradable saline wastewater (TOC around 200 mgL(-1)) containing a biorecalcitrant compound, alpha-methylphenylglycine (MPG), at a concentration of 500 mgL(-1). Ozonation experiments were performed in a 50-L reactor with constant inlet ozone of 21.9 g m(-3). Solar photo-Fenton tests were carried out in a 75-L pilot plant made up of four compound parabolic collector (CPC) units. The catalyst concentration employed in this system was 20 mgL(-1) of Fe2+ and the H2O2 concentration was kept in the range of 200-500mgL(-1). Complete degradation of MPG was attained after 1,020 min of ozone treatment, while only 195 min were required for photo-Fenton. Samples from different stages of both AOPs were taken for Zahn-Wellens biocompatibility tests. Biodegradability enhancement of the industrial saline wastewater was confirmed (>70% biodegradability). Biodegradable compounds generated during the preliminary oxidative processes were biologically mineralised in a 170-L aerobic immobilised biomass reactor (IBR). The global efficiency of both AOP/biological combined systems was 90% removal of an initial TOC of over 500 mgL(-1).

Monitoring of the spatial and temporal dynamics of BER/SSBR pathway proteins, including MYH, UNG2, MPG, NTH1 and NEIL1-3, during DNA replication.

PubMed

Bj Rås, Karine Ø; Sousa, Mirta M L; Sharma, Animesh; Fonseca, Davi M; S Gaard, Caroline K; Bj Rås, Magnar; Otterlei, Marit

2017-08-21

Base lesions in DNA can stall the replication machinery or induce mutations if bypassed. Consequently, lesions must be repaired before replication or in a post-replicative process to maintain genomic stability. Base excision repair (BER) is the main pathway for repair of base lesions and is known to be associated with DNA replication, but how BER is organized during replication is unclear. Here we coupled the iPOND (isolation of proteins on nascent DNA) technique with targeted mass-spectrometry analysis, which enabled us to detect all proteins required for BER on nascent DNA and to monitor their spatiotemporal orchestration at replication forks. We demonstrate that XRCC1 and other BER/single-strand break repair (SSBR) proteins are enriched in replisomes in unstressed cells, supporting a cellular capacity of post-replicative BER/SSBR. Importantly, we identify for the first time the DNA glycosylases MYH, UNG2, MPG, NTH1, NEIL1, 2 and 3 on nascent DNA. Our findings suggest that a broad spectrum of DNA base lesions are recognized and repaired by BER in a post-replicative process. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

Automotive advertising copy test. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

In order to better understand consumer perceptions and use of the mileage estimates as presented in print advertising, the Department of Energy, in conjunction with the Federal Trade Commission and the EPA, initiated a research project. Purpose was to: measure recall/recognition of EPA Estimated MPG/highway mileage estimates in print ads; determine consumer expectations and believability of advertised mileage guidelines; measure recall/comprehension of mileage disclaimers; and determine how consumers utilize published mileage estimates.

VizieR Online Data Catalog: Transiting planet GJ 1132 (Southworth+, 2017)

NASA Astrophysics Data System (ADS)

Southworth, J.; Mancini, L.; Madhusudhan, N.; Molliere, P.; Ciceri, S.; Henning, T.

2018-05-01

Light curves of 10 transits of the extrasolar planetary system GJ 1132 are presented. The data were obtained using the MPG 2.2m telescope with GROND imager, and observed simultaneously in the g, r, i, z, J, H and K passbands. The errorbars for each transit have been scaled so the best-fitting model (obtained using the JKTEBOP code) has a reduced chi-squared value of 1.0. (1 data file).

Green Flight Challenge

NASA Image and Video Library

2011-09-27

The e-Genius aircraft prepares to takeoff for the miles per gallon (MPG) flight during the 2011 Green Flight Challenge, sponsored by Google, at the Charles M. Schulz Sonoma County Airport in Santa Rosa, Calif. on Tuesday, Sept. 27, 2011. NASA and the Comparative Aircraft Flight Efficiency (CAFE) Foundation are having the challenge with the goal to advance technologies in fuel efficiency and reduced emissions with cleaner renewable fuels and electric aircraft. Photo Credit: (NASA/Bill Ingalls)

Green Flight Challenge

NASA Image and Video Library

2011-09-27

The PhoEnix aircraft prepares to takeoff for the miles per gallon (MPG) flight during the 2011 Green Flight Challenge, sponsored by Google, at the Charles M. Schulz Sonoma County Airport in Santa Rosa, Calif. on Tuesday, Sept. 27, 2011. NASA and the Comparative Aircraft Flight Efficiency (CAFE) Foundation are having the challenge with the goal to advance technologies in fuel efficiency and reduced emissions with cleaner renewable fuels and electric aircraft. Photo Credit: (NASA/Bill Ingalls)

Green Flight Challenge

NASA Image and Video Library

2011-09-27

The Pipistrel-USA, Taurus G4 aircraft prepares to takeoff for the miles per gallon (MPG) flight during the 2011 Green Flight Challenge, sponsored by Google, at the Charles M. Schulz Sonoma County Airport in Santa Rosa, Calif. on Tuesday, Sept. 27, 2011. NASA and the Comparative Aircraft Flight Efficiency (CAFE) Foundation are having the challenge with the goal to advance technologies in fuel efficiency and reduced emissions with cleaner renewable fuels and electric aircraft. Photo Credit: (NASA/Bill Ingalls)

Green Flight Challenge

NASA Image and Video Library

2011-09-27

The e-Genius aircraft is pulled out to the runway for the miles per gallon (MPG) flight during the 2011 Green Flight Challenge, sponsored by Google, at the Charles M. Schulz Sonoma County Airport in Santa Rosa, Calif. on Tuesday, Sept. 27, 2011. NASA and the Comparative Aircraft Flight Efficiency (CAFE) Foundation are having the challenge with the goal to advance technologies in fuel efficiency and reduced emissions with cleaner renewable fuels and electric aircraft. Photo Credit: (NASA/Bill Ingalls)

Green Flight Challenge

NASA Image and Video Library

2011-09-27

Media and ground crew look at aircraft as they participate in the miles per gallon (MPG) flight during the 2011 Green Flight Challenge, sponsored by Google, at the Charles M. Schulz Sonoma County Airport in Santa Rosa, Calif. on Tuesday, Sept. 27, 2011. NASA and the Comparative Aircraft Flight Efficiency (CAFE) Foundation are having the challenge with the goal to advance technologies in fuel efficiency and reduced emissions with cleaner renewable fuels and electric aircraft. Photo Credit: (NASA/Bill Ingalls)

West Philly Hybrid X Team

NASA Image and Video Library

2010-06-06

NASA Chief Technologist Bobby Braun, left, and Congressman Chaka Fattah (D-PA), right, talk to student members of the West Philly Hybrid X Team at West Philadelphia High School in Philadelphia, Monday, June 7, 2010. The prize-winning West Philly Hybrid X Team has drawn international recognition as the only high school among 22 finalists in the Progressive Insurance Automotive X Prize (PIAXP) competition to develop cars that achieve over 100 MPG. Photo Credit: (NASA/Bill Ingalls)

West Philly Hybrid X Team

NASA Image and Video Library

2010-06-06

NASA Chief Technologist Bobby Braun, left, and Pennsylvania State Representative Jim Roebuck talk with students of the West Philly Hybrid X Team at West Philadelphia High School in Philadelphia, Monday, June 7, 2010. The prize-winning West Philly Hybrid X Team has drawn international recognition as the only high school among 22 finalists in the Progressive Insurance Automotive X Prize (PIAXP) competition to develop cars that achieve over 100 MPG. Photo Credit: (NASA/Bill Ingalls)

The change in NT-pro-BNP and post-PTMC echocardiography parameters in patients with mitral stenosis. A pilot study.

PubMed

Safi, Morteza; Bayat, Fariba; Ahmadi, Zahra; Shekarchizadeh, Masood; Khaheshi, Isa; Naderian, Mohammadreza

2017-06-01

The change in the level of NT-pro-BNP (N-terminal-pro-Brain Natriuretic Peptide) is now considered as a reflection of the hemodynamic alterations and its circulatory reductions reported early after successful PTMC (percutaneous transvenous mitral commissurotomy). The present study aims to assess the change in the level of NT-pro BNP following PTMC in patients with mitral stenosis and also to determine the association between circulatory NT-pro-BNP reduction and post-PTMC echocardiography parameters. Twenty five symptomatic consecutive patients with severe MS undergoing elective PTMC were prospectively enrolled. All patients underwent echocardiography before and also 24 to 48 hours after PTMC. Peripheral blood samples were taken for measurement of NT-pro-BNP before as well as 24 to 48 hours after PTMC. The patients were also classified in group with normal sinus rhythm or having atrial fibrillation (AF) based on their 12-lead electrocardiogram. It was shown a significant decrease in the parameters of PPG (Peak Pressure Gradient), MPG (Mean Pressure Gradient), PHT (Pressure Half Time), PAP (Pulmonary Arterial Pressure), LAV (Left Atrial Volume), and also a significant increase in MVA (Mitral Valve Area) RVS (Right Ventricular S velocity), and strains of lateral, septal, inferior and anterior walls of LA following PTMC. The mean LVEF remained unchanged after PTMC. The mean NT-pro-BNP before PTMC was 309.20 ± 17.97 pg/lit that significantly diminished after PTMC to 235.72 ± 22.46 pg/lit (p = 0.009). Among all echocardiography parameters, only MPG was positively associated with the change in NT-pro-BNP after PTMC. Comparing the change in echocardiography indices between the patients with normal rhythm and those with AF, lower change in PAP was shown in the group with AF. However, more change in the level of NT-pro-BNP after PTMC was shown in the patients with AF compared to those without this arrhythmia. PTMC procedure leads to reduce the level of NT-pro-BNP. The change in NT-pro-BNP is an indicator for change in MS severity indicated by decreasing MPG parameter. Lower change in PAP as well as higher change in NT-pro-BNP is predicted following PTMC in the group with AF compared to those with normal sinus rhythm.

P650Influence of fetunin-a level on progression of calcific aortic valve stenosis The COFRASA - GENERAC Study.

PubMed

Kubota, N; David Messika-Zeitoun, Dmz

2016-12-01

In recent years, pathophysiology of aortic stenosis (AS) has been considered as a possibly active inflammatory process, but its determinants remain unclear. Calcium tissue deposition observed in dilaysis patients have been linked to low level of Fetuin-A, a powerful inhibitor of ectopic calcification. It is thus suspected to play a role in development of aortic stenosis. To assess correlation between Fetuin-A level and AS progression in a prospective cohort of AS patients, COFRASA (clinicalTrial.gov_number_NCT00338676) and GENERAC (clinicalTrial.gov_number_NCT00647088). A comprehensive clinical evaluation and Fetuin-A plasma level measurement was performed at baseline. AS severity was evaluated at baseline and yearly thereafter using echocardiography (mean pressure gradient (MPG)) and computed tomography (degree of aortic valve calcification or AVC). Annual progression was calculated as [(final measurement - baseline measurement)/follow-up duration] for both MPG and AVC measurements. We enrolled 296 patients with at least 1 year of follow-up. Mean age was 74±10 years, 217 (73%) were men. Mean Fetuin-A level was 0.55±0.15 g/L. After a mean follow-up of 3.0±1.7 years, no correlation was found between AS progression and Fetuin-A level, using either MPG (r=0.015, p=0.82) or AVC (r=0.014, p=0.82). This was also true when comparing patients with lower level of Fetuin-A (≤0.53 g/L, the median in our cohort) with patients with higher level(+3±5 mmHg/year (median 2, [0-5] vs +4±4 mmHg/year (median 2, [1-6]) p=0.06, and +205±290 AUC/year (median 122, [32-269]) vs +240±310 AUC/year (median 145, [50-313], p=0.24). This was true also after adjustment for baseline severity and valve antomy. In our prospective cohortot of AS patients we found no impact of Fetuin-A on both hemodynamic and anatomic AS progression. Despite strong capacity to inhibit ectopic calcium deposition, Fetuin-A plasma level seems to have minor influence on AS progression. Published on behalf of the European Society of Cardiology. All rights reserved. © The Author 2016. For permissions please email: Journals.permissions@oup.com.

Prospective assessment of the frequency of low gradient severe aortic stenosis with preserved left ventricular ejection fraction: Critical impact of aortic flow misalignment and pressure recovery phenomenon.

PubMed

Ringle, Anne; Castel, Anne-Laure; Le Goffic, Caroline; Delelis, François; Binda, Camille; Bohbot, Yohan; Ennezat, Pierre Vladimir; Guerbaai, Raphaëlle A; Levy, Franck; Vincentelli, André; Graux, Pierre; Tribouilloy, Christophe; Maréchaux, Sylvestre

2018-02-10

The frequency of paradoxical low-gradient severe aortic stenosis (AS) varies widely across studies. The impact of misalignment of aortic flow and pressure recovery phenomenon on the frequency of low-gradient severe AS with preserved left ventricular ejection fraction (LVEF) has not been evaluated in prospective studies. To investigate prospectively the impact of aortic flow misalignment by Doppler and lack of pressure recovery phenomenon correction on the frequency of low-gradient (LG) severe aortic stenosis (AS) with preserved LVEF. Aortic jet velocities and mean pressure gradient (MPG) were obtained by interrogating all windows in 68 consecutive patients with normal LVEF and severe AS (aortic valve area [AVA] ≤1cm 2 ) on the basis of the apical imaging window alone (two-dimensional [2D] apical approach). Patients were classified as having LG or high-gradient (HG) AS according to MPG <40mmHg or ≥40mmHg, and normal flow (NF) or low flow (LF) according to stroke volume index >35mL/m 2 or ≤35mL/m 2 , on the basis of the 2D apical approach, the multiview approach (multiple windows evaluation) and AVA corrected for pressure recovery. The proportion of LG severe AS was 57% using the 2D apical approach alone. After the multiview approach and correction for pressure recovery, the proportion of LG severe AS decreased from 57% to 13% (LF-LG severe AS decreased from 23% to 3%; NF-LG severe AS decreased from 34% to 10%). As a result, 25% of patients were reclassified as having HG severe AS (AVA ≤1cm 2 and MPG ≥40mmHg) and 19% as having moderate AS. Hence, 77% of patients initially diagnosed with LG severe AS did not have "true" LG severe AS when the multiview approach and the pressure recovery phenomenon correction were used. Aortic flow misevaluation, resulting from lack of use of multiple windows evaluation and pressure recovery phenomenon correction, accounts for a large proportion of incorrectly graded AS and considerable overestimation of the frequency of LG severe AS with preserved LVEF. Copyright © 2018 Elsevier Masson SAS. All rights reserved.

Green Flight Challenge

NASA Image and Video Library

2011-09-27

The e-Genius aircraft is pulled pulled out to the runway for the miles per gallon (MPG) flight during the 2011 Green Flight Challenge, sponsored by Google, at the Charles M. Schulz Sonoma County Airport in Santa Rosa, Calif. on Tuesday, Sept. 27, 2011. NASA and the Comparative Aircraft Flight Efficiency (CAFE) Foundation are having the challenge with the goal to advance technologies in fuel efficiency and reduced emissions with cleaner renewable fuels and electric aircraft. Photo Credit: (NASA/Bill Ingalls)

Green Flight Challenge

NASA Image and Video Library

2011-09-27

The e-Genius pilots talk with a fellow team member prior to their takeoff for the miles per gallon (MPG) flight during the 2011 Green Flight Challenge, sponsored by Google, at the Charles M. Schulz Sonoma County Airport in Santa Rosa, Calif. on Tuesday, Sept. 27, 2011. NASA and the Comparative Aircraft Flight Efficiency (CAFE) Foundation are having the challenge with the goal to advance technologies in fuel efficiency and reduced emissions with cleaner renewable fuels and electric aircraft. Photo Credit: (NASA/Bill Ingalls)

Green Flight Challenge

NASA Image and Video Library

2011-09-27

The Pipistrel-USA team look up at aircraft as they participate in the miles per gallon (MPG) flight during the 2011 Green Flight Challenge, sponsored by Google, at the Charles M. Schulz Sonoma County Airport in Santa Rosa, Calif. on Tuesday, Sept. 27, 2011. NASA and the Comparative Aircraft Flight Efficiency (CAFE) Foundation are having the challenge with the goal to advance technologies in fuel efficiency and reduced emissions with cleaner renewable fuels and electric aircraft. Photo Credit: (NASA/Bill Ingalls)

Green Flight Challenge

NASA Image and Video Library

2011-09-27

The Embry-Riddle Aeronautical University, EcoEagle prepares to takeoff as an demonstration aircraft for the miles per gallon (MPG) flight during the 2011 Green Flight Challenge, sponsored by Google, at the Charles M. Schulz Sonoma County Airport in Santa Rosa, Calif. on Tuesday, Sept. 27, 2011. NASA and the Comparative Aircraft Flight Efficiency (CAFE) Foundation are having the challenge with the goal to advance technologies in fuel efficiency and reduced emissions with cleaner renewable fuels and electric aircraft. Photo Credit: (NASA/Bill Ingalls)

Green Flight Challenge

NASA Image and Video Library

2011-09-27

The checkered flag is waved as the PhoEnix aircraft crosses the finish line of the miles per gallon (MPG) flight during the 2011 Green Flight Challenge, sponsored by Google, at the Charles M. Schulz Sonoma County Airport in Santa Rosa, Calif. on Tuesday, Sept. 27, 2011. NASA and the Comparative Aircraft Flight Efficiency (CAFE) Foundation are having the challenge with the goal to advance technologies in fuel efficiency and reduced emissions with cleaner renewable fuels and electric aircraft. Photo Credit: (NASA/Bill Ingalls)

Green Flight Challenge

NASA Image and Video Library

2011-09-27

The Pipistrel-USA, Taurus G4 aircraft is seen as it participates in the miles per gallon (MPG) flight during the 2011 Green Flight Challenge, sponsored by Google, at the Charles M. Schulz Sonoma County Airport in Santa Rosa, Calif. on Tuesday, Sept. 27, 2011. NASA and the Comparative Aircraft Flight Efficiency (CAFE) Foundation are having the challenge with the goal to advance technologies in fuel efficiency and reduced emissions with cleaner renewable fuels and electric aircraft. Photo Credit: (NASA/Bill Ingalls)

West Philly Hybrid X Team

NASA Image and Video Library

2010-06-06

NASA Chief Technologist Bobby Braun, left, and Congressman Chaka Fattah (D-PA), center, listen to Azeem Hill, a member of the West Philly Hybrid X Team at West Philadelphia High School in Philadelphia, Monday, June 7, 2010. The prize-winning West Philly Hybrid X Team has drawn international recognition as the only high school among 22 finalists in the Progressive Insurance Automotive X Prize (PIAXP) competition to develop cars that achieve over 100 MPG. Photo Credit: (NASA/Bill Ingalls)

West Philly Hybrid X Team

NASA Image and Video Library

2010-06-06

NASA Chief Technologist Bobby Braun, left, and Congressman Chaka Fattah (D-PA), center, and Pennsylvania State Representative Jim Roebuck talk with students of the West Philly Hybrid X Team at West Philadelphia High School in Philadelphia, Monday, June 7, 2010. The prize-winning West Philly Hybrid X Team has drawn international recognition as the only high school among 22 finalists in the Progressive Insurance Automotive X Prize (PIAXP) competition to develop cars that achieve over 100 MPG. Photo Credit: (NASA/Bill Ingalls)

Crystallization and preliminary crystallographic analysis of mannosyl-3-phosphoglycerate synthase from Rubrobacter xylanophilus

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sá-Moura, Bebiana; Albuquerque, Luciana; Empadinhas, Nuno

2008-08-01

The enzyme mannosyl-3-phosphoglycerate synthase from R. xylanophilus has been expressed, purified and crystallized. The crystals belong to the hexagonal space group P6{sub 5}22 and diffract to 2.2 Å resolution. Rubrobacter xylanophilus is the only Gram-positive bacterium known to synthesize the compatible solute mannosylglycerate (MG), which is commonly found in hyperthermophilic archaea and some thermophilic bacteria. Unlike the salt-dependent pattern of accumulation observed in (hyper)thermophiles, in R. xylanophilus MG accumulates constitutively. The synthesis of MG in R. xylanophilus was tracked from GDP-mannose and 3-phosphoglycerate, but the genome sequence of the organism failed to reveal any of the genes known to bemore » involved in this pathway. The native enzyme was purified and its N-terminal sequence was used to identify the corresponding gene (mpgS) in the genome of R. xylanophilus. The gene encodes a highly divergent mannosyl-3-phosphoglycerate synthase (MpgS) without relevant sequence homology to known mannosylphosphoglycerate synthases. In order to understand the specificity and enzymatic mechanism of this novel enzyme, it was expressed in Escherichia coli, purified and crystallized. The crystals thus obtained belonged to the hexagonal space group P6{sub 5}22 and contained two protein molecules per asymmetric unit. The structure was solved by SIRAS using a mercury derivative.« less

Partial degradation of five pesticides and an industrial pollutant by ozonation in a pilot-plant scale reactor.

PubMed

Maldonado, M I; Malato, S; Pérez-Estrada, L A; Gernjak, W; Oller, I; Doménech, Xavier; Peral, José

2006-11-16

Aqueous solutions of a mixture of several pesticides (alachlor, atrazine, chlorfenvinphos, diuron and isoproturon), considered PS (priority substances) by the European Commission, and an intermediate product of the pharmaceutical industry (alpha-methylphenylglycine, MPG) chosen as a model industrial pollutant, have been degraded at pilot-plant scale using ozonation. This study is part of a large research project [CADOX Project, A Coupled Advanced Oxidation-Biological Process for Recycling of Industrial Wastewater Containing Persistent Organic Contaminants, Contract No.: EVK1-CT-2002-00122, European Commission, http://www.psa.es/webeng/projects/cadox/index.html] founded by the European Union that inquires into the potential coupling between chemical and biological oxidations for the removal of toxic or non-biodegradable contaminants from water. The evolution of pollutant concentration, TOC mineralization, generation of inorganic species and consumption of O3 have been followed in order to visualize the chemical treatment effectiveness. Although complete mineralization is hard to accomplish, and large amounts of the oxidant are required to lower the organic content of the solutions, the possibility of ozonation cannot be ruled out if partial degradation is the final goal wanted. In this sense, Zahn-Wellens biodegradability tests of the ozonated MPG solutions have been performed, and the possibility of a further coupling with a secondary biological treatment for complete organic removal is envisaged.

De novo identification of highly diverged protein repeats by probabilistic consistency.

PubMed

Biegert, A; Söding, J

2008-03-15

An estimated 25% of all eukaryotic proteins contain repeats, which underlines the importance of duplication for evolving new protein functions. Internal repeats often correspond to structural or functional units in proteins. Methods capable of identifying diverged repeated segments or domains at the sequence level can therefore assist in predicting domain structures, inferring hypotheses about function and mechanism, and investigating the evolution of proteins from smaller fragments. We present HHrepID, a method for the de novo identification of repeats in protein sequences. It is able to detect the sequence signature of structural repeats in many proteins that have not yet been known to possess internal sequence symmetry, such as outer membrane beta-barrels. HHrepID uses HMM-HMM comparison to exploit evolutionary information in the form of multiple sequence alignments of homologs. In contrast to a previous method, the new method (1) generates a multiple alignment of repeats; (2) utilizes the transitive nature of homology through a novel merging procedure with fully probabilistic treatment of alignments; (3) improves alignment quality through an algorithm that maximizes the expected accuracy; (4) is able to identify different kinds of repeats within complex architectures by a probabilistic domain boundary detection method and (5) improves sensitivity through a new approach to assess statistical significance. Server: http://toolkit.tuebingen.mpg.de/hhrepid; Executables: ftp://ftp.tuebingen.mpg.de/pub/protevo/HHrepID

Inferring nucleosome positions with their histone mark annotation from ChIP data

PubMed Central

Mammana, Alessandro; Vingron, Martin; Chung, Ho-Ryun

2013-01-01

Motivation: The nucleosome is the basic repeating unit of chromatin. It contains two copies each of the four core histones H2A, H2B, H3 and H4 and about 147 bp of DNA. The residues of the histone proteins are subject to numerous post-translational modifications, such as methylation or acetylation. Chromatin immunoprecipitiation followed by sequencing (ChIP-seq) is a technique that provides genome-wide occupancy data of these modified histone proteins, and it requires appropriate computational methods. Results: We present NucHunter, an algorithm that uses the data from ChIP-seq experiments directed against many histone modifications to infer positioned nucleosomes. NucHunter annotates each of these nucleosomes with the intensities of the histone modifications. We demonstrate that these annotations can be used to infer nucleosomal states with distinct correlations to underlying genomic features and chromatin-related processes, such as transcriptional start sites, enhancers, elongation by RNA polymerase II and chromatin-mediated repression. Thus, NucHunter is a versatile tool that can be used to predict positioned nucleosomes from a panel of histone modification ChIP-seq experiments and infer distinct histone modification patterns associated to different chromatin states. Availability: The software is available at http://epigen.molgen.mpg.de/nuchunter/. Contact: chung@molgen.mpg.de Supplementary information: Supplementary data are available at Bioinformatics online. PMID:23981350

CSB: a Python framework for structural bioinformatics.

PubMed

Kalev, Ivan; Mechelke, Martin; Kopec, Klaus O; Holder, Thomas; Carstens, Simeon; Habeck, Michael

2012-11-15

Computational Structural Biology Toolbox (CSB) is a cross-platform Python class library for reading, storing and analyzing biomolecular structures with rich support for statistical analyses. CSB is designed for reusability and extensibility and comes with a clean, well-documented API following good object-oriented engineering practice. Stable release packages are available for download from the Python Package Index (PyPI) as well as from the project's website http://csb.codeplex.com. ivan.kalev@gmail.com or michael.habeck@tuebingen.mpg.de

West Philly Hybrid X Team

NASA Image and Video Library

2010-06-06

NASA Chief Technologist Bobby Braun sits in the West Philly X Prize hybrid sports car as Sowande Gay, a student member of the West Philly Hybrid Team at West Philadelphia High School, explains the modifications made to the car, in Philadelphia, Monday, June 7, 2010. The prize-winning West Philly Hybrid X Team has drawn international recognition as the only high school among 22 finalists in the Progressive Insurance Automotive X Prize (PIAXP) competition to develop cars that achieve over 100 MPG. Photo Credit: (NASA/Bill Ingalls)

Comprehensive Analysis of DNA Methylation Data with RnBeads

PubMed Central

Walter, Jörn; Lengauer, Thomas; Bock, Christoph

2014-01-01

RnBeads is a software tool for large-scale analysis and interpretation of DNA methylation data, providing a user-friendly analysis workflow that yields detailed hypertext reports (http://rnbeads.mpi-inf.mpg.de). Supported assays include whole genome bisulfite sequencing, reduced representation bisulfite sequencing, Infinium microarrays, and any other protocol that produces high-resolution DNA methylation data. Important applications of RnBeads include the analysis of epigenome-wide association studies and epigenetic biomarker discovery in cancer cohorts. PMID:25262207

Green Flight Challenge

NASA Image and Video Library

2011-09-27

CAFE Foundation Hanger Boss Mike Fenn waves the checkered flag as aircraft pass the finish line of the miles per gallon (MPG) flight during the 2011 Green Flight Challenge, sponsored by Google, at the Charles M. Schulz Sonoma County Airport in Santa Rosa, Calif. on Tuesday, Sept. 27, 2011. NASA and the Comparative Aircraft Flight Efficiency (CAFE) Foundation are having the challenge with the goal to advance technologies in fuel efficiency and reduced emissions with cleaner renewable fuels and electric aircraft. Photo Credit: (NASA/Bill Ingalls)

Formation of Glycidyl Fatty Acid Esters Both in Real Edible Oils during Laboratory-Scale Refining and in Chemical Model during High Temperature Exposure.

PubMed

Cheng, Weiwei; Liu, Guoqin; Liu, Xinqi

2016-07-27

In the present study, the formation mechanisms of glycidyl fatty acid esters (GEs) were investigated both in real edible oils (soybean oil, camellia oil, and palm oil) during laboratory-scale preparation and refining and in chemical model (1,2-dipalmitin (DPG) and 1-monopalmitin (MPG)) during high temperature exposure (160-260 °C under nitrogen). The formation process of GEs in the chemical model was monitored using attenuated total reflection-Fourier transform infrared (ATR-FTIR) spectroscopy. The results showed that the roasting and pressing process could produce certain amounts of GEs that were much lower than that produced in the deodorization process. GE contents in edible oils increased continuously and significantly with increasing deodorization time below 200 °C. However, when the temperature exceeded 200 °C, GE contents sharply increased in 1-2 h followed by a gradual decrease, which could verify a simultaneous formation and degradation of GEs at high temperature. In addition, it was also found that the presence of acylglycerol (DAGs and MAGs) could significantly increase the formation yield of GEs both in real edible oils and in chemical model. Compared with DAGs, moreover, MAGs displayed a higher formation capacity but substantially lower contribution to GE formation due to their low contents in edible oils. In situ ATR-FTIR spectroscopic evidence showed that cyclic acyloxonium ion intermediate was formed during GE formation derived from DPG and MPG in chemical model heated at 200 °C.

Translocation of cell-penetrating peptides into Candida fungal pathogens.

PubMed

Gong, Zifan; Karlsson, Amy J

2017-09-01

Cell-penetrating peptides (CPPs) are small peptides capable of crossing cellular membranes while carrying molecular cargo. Although they have been widely studied for their ability to translocate nucleic acids, small molecules, and proteins into mammalian cells, studies of their interaction with fungal cells are limited. In this work, we evaluated the translocation of eleven fluorescently labeled peptides into the important human fungal pathogens Candida albicans and C. glabrata and explored the mechanisms of translocation. Seven of these peptides (cecropin B, penetratin, pVEC, MAP, SynB, (KFF) 3 K, and MPG) exhibited substantial translocation (>80% of cells) into both species in a concentration-dependent manner, and an additional peptide (TP-10) exhibiting strong translocation into only C. glabrata. Vacuoles were involved in translocation and intracellular trafficking of the peptides in the fungal cells and, for some peptides, escape from the vacuoles and localization in the cytosol were correlated to toxicity toward the fungal cells. Endocytosis was involved in the translocation of cecropin B, MAP, SynB, MPG, (KFF) 3 K, and TP-10, and cecropin B, penetratin, pVEC, and MAP caused membrane permeabilization during translocation. These results indicate the involvement of multiple translocation mechanisms for some CPPs. Although high levels of translocation were typically associated with toxicity of the peptides toward the fungal cells, SynB was translocated efficiently into Candida cells at concentrations that led to minimal toxicity. Our work highlights the potential of CPPs in delivering antifungal molecules and other bioactive cargo to Candida pathogens. © 2017 The Protein Society.

P1088Match and mismatch between opening area and resistance in mild and moderate rheumatic mitral stenosis.

PubMed

El-Dosouky, I

2016-12-01

Mitral valve resistance (MVR) is a hemodynamic consequence of mitral stenosis but it has no clear threshold and it has a shortage of data to be reliable. is to investigate match and mismatch between opening area and resistance especially in patients with moderate and mild mitral stenosis. This cross section case control study comprised 88 patients with moderate and mild rheumatic mitral stenosis. Transthorathic echocardiographic study estimated: mitral valve area (MVA) both by planimerty (2D) and pressure half time (PHT), mitral valve score (MVS), mean transmitral pressure gradient (MPG), diastolic filling time(DFT), left ventricular out flow tract diameter (LVOTd) and velocity time integral (LVOT vti) , the MVR was calculated as: MPG/aortic flow ratio [(LVOTd) (LVOTvti)/ DFT] in dynes.sec.cm5, NYHA function class of all patients was estimated. We classified our patients into 2 groups, group 1 (51 patients) with matched MVR and group 2 (37 patients) with unmatched MVR (unexpected high MVR in relation to valve area). Patients with moderate mitral stenosis have MVR less than 105 dynes.sec/cm5, while patient with mild mitral stenosis have MVR less than 76 dynes.sec/cm5 this is in the matched group, but there are patients with unmatched higher MVR. Group 2 compared to group 1; had higher NYHA function class (1.4±0.6 vs. 1.2±0.4, P < 0.05), MVS (8.1±1.8 vs 7±0.9, P < 0.05), MPG (11,3±3.7 vs.7.8±2.5 mmHg, P < 0.01) and higher MVR (122.37±29.87 vs. 67.18±20.12 dynes.sec/cm5 , P < 0.01), MVR showed positive correlation with MVS (r=0.5, P < 0.05), Step wise logistic regression analysis showed that MVS is the only independent predictor of the MVR severity in the mismatched (unexpected high) group , so the higher the MVS the higher the expected MVR whatever the MVA is ; (B±SE=6.997±2.826, t=2.476, 95% CI 1.241±12.752 with an odds ratio=0.412, P < 0.05). It would make much more sense to investigate match and mismatch between opening area and resistance in rheumatic mitral stenosis, the only independent predictor of mismatch is the mitral valve score. Published on behalf of the European Society of Cardiology. All rights reserved. © The Author 2016. For permissions please email: Journals.permissions@oup.com.

Green Flight Challenge

NASA Image and Video Library

2011-09-27

Pipistrel-USA Pilots Robin Reid, left, and David Morss, talk on their cell phones shortly after participating in the miles per gallon (MPG) flight in their Taurus G4 aircraft during the 2011 Green Flight Challenge, sponsored by Google, at the Charles M. Schulz Sonoma County Airport in Santa Rosa, Calif. on Tuesday, Sept. 27, 2011. NASA and the Comparative Aircraft Flight Efficiency (CAFE) Foundation are having the challenge with the goal to advance technologies in fuel efficiency and reduced emissions with cleaner renewable fuels and electric aircraft. Photo Credit: (NASA/Bill Ingalls)

The Genesis of an Impulsive Coronal Mass Ejection Observed at Ultra-High Cadence by AIA on SDO

DTIC Science & Technology

2010-04-01

Most CMEmodels agree that the final ejected structure is a magnetic fluxrope which may correspond to the cavity observed in 3-part CMEs in the outer ...signals the launch of an EUV wave around the bubble (movie1.mpg) but the wave analysis will be reported elsewhere. The outer rim of the bubble becomes...the upper section of the flux-rope and not to its legs. 2RHESSI was observing the Crab Nebula during our event. – 6 – SXR rise profile arises from the

The CfA redshift survey - Data for the NGP + 30 zone

NASA Technical Reports Server (NTRS)

Huchra, John P.; Geller, Margaret J.; De Lapparent, Valerie; Corwin, Harold G., Jr.

1990-01-01

Redshifts and morphological types are presented for a complete sample of 1093 galaxies with m(pg) less than or equal to 15.5 mag in a 6-deg-wide strip crossing the north Galactic pole. Also presented are redshifts for an additional 92 fainter galaxies in the same strip. Outside of the core of the Coma Cluster, both early- and late-type galaxies trace essentially the same structures in redshift space. Thinner slices illustrate the small velocity dispersion perpendicular to the surfaces in the survey.

Green Flight Challenge

NASA Image and Video Library

2011-09-27

CAFE Foundation Security Chief and Event Manager Bruno Mombrinie, left, talks with CAFE Foundation eCharging Chief Alan Soule as flight crews prepare for the miles per gallon (MPG) flight during the 2011 Green Flight Challenge, sponsored by Google, at the Charles M. Schulz Sonoma County Airport in Santa Rosa, Calif. on Tuesday, Sept. 27, 2011. NASA and the Comparative Aircraft Flight Efficiency (CAFE) Foundation are having the challenge with the goal to advance technologies in fuel efficiency and reduced emissions with cleaner renewable fuels and electric aircraft. Photo Credit: (NASA/Bill Ingalls)

No surgery required: the future of feline sterilization: An overview of the Michelson Prize & Grants in Reproductive Biology.

PubMed

Johnston, Shirley; Rhodes, Linda

2015-09-01

For many years, researchers have been studying reproduction of cats and dogs, including approaches to non-surgical sterilization, but scant funding has been available for this work. Recognizing the need to fund research and to attract researchers from the biomedical community to apply their expertise to this area, the Michelson Prize & Grants (MPG) in Reproductive Biology program was founded. Since 2009, it has funded 34 research projects in seven countries toward discovery of a safe single-administration lifetime non-surgical sterilant in male and female cats and dogs. The goal of the MPG program is the reduction or elimination of the approximately 2.7 million deaths of healthy shelter cats and dogs in the US every year. The successful product is expected to be a single-dose injectable product approved by the US Food and Drug Administration as a veterinary prescription item. The most optimistic prediction is that such a product will reach the hands of practicing veterinarians within the next decade. Active research is in progress using approaches such as immunocontraception with a single-administration vaccine against gonadotropin releasing hormone (GnRH). Long-term therapy with GnRH agonists such as deslorelin administered in controlled-release devices is also being studied. Other scientists are targeting cells in the brain or gonads with cytotoxins, such as are used in cancer chemotherapy. Gene therapy expressing proteins that suppress reproduction and gene silencing of peptides essential to reproduction are further avenues of research. Findings are available at www.michelsonprizeandgrants.org/michelson-grants/research-findings. © The Author(s) 2015.

Response properties of the pharyngeal branch of the glossopharyngeal nerve for umami taste in mice and rats.

PubMed

Kitagawa, Junichi; Takahashi, Yoshihiro; Matsumoto, Shigeji; Shingai, Tomio

2007-04-24

Many studies have reported the mechanism underlying umami taste. However, there are no investigations of responses to umami stimuli taste originating from chemoreceptors in the pharyngeal region. The pharyngeal branch of the glossopharyngeal nerve (GPN-ph) innervating the pharynx has unique responses to taste stimulation that differs from responses of the chorda tympani nerve and lingual branch of the glossopharyngeal nerve. Water evokes robust response, but NaCl solutions at physiological concentrations do not elicit responses. The present study was designed to examine umami taste (chemosensory) responses in the GPN-ph. Response characteristics to umami taste were compared between mice and rats. In mice, stimulation with compounds eliciting umami taste (0.1M monosodium L-glutamate (MSG), 0.01M inosine monophosphate (IMP) and the mixture of 0.1M MSG+0.01M IMP) evoked higher responses than application of distilled water (DW). However, synergistic response of a mixture of 0.1M MSG+0.01M IMP was not observed. In rats, there is no significant difference between the responses to umami taste (0.1M MSG, 0.01M IMP and the mixture of 0.1M MSG+0.01M IMP) and DW. Monopotassium glutamate (MPG) was used in rats to examine the contribution of the sodium component of MSG on the response. Stimulation with 0.1M MPG evoked a higher response when compared with responses to DW. The present results suggest that umami taste compounds are effective stimuli of the chemoreceptors in the pharynx of both mice and rats.

The effect of cavernous nerve traction on erectile function in rats

PubMed Central

Chen, Liping; Wang, Tao; Wang, Shaogang; Liu, Jihong

2017-01-01

We performed this study to evaluate the effect of cavernous nerve (CN) traction on erectile function in rats. Thirty-two 8- week-old Sprague–Dawley rats were divided into four groups: control, 1-minute CN traction, 2-minute CN traction, and 2-minute CN crush. CN traction was performed using a glass hook with a tensile force of 0.2 Newton. One month later, the mean arterial pressure (MAP) and intracavernosal pressure (ICP) in response to CN stimulation were measured to assess erectile function. The penis and major pelvic ganglion (MPG) were harvested to explore the expression of neuronal nitric oxide synthase (nNOS) and neurofilament, fibrosis and apoptosis. The ICP/MAP ratio was reduced in the 2-minute CN traction group compared with the control group (P < 0.05). The ICP/MAP ratio in the CN crush group was lower than in the other three groups (P < 0.05, for each). Expression of nNOS in both MPG and dorsal penile nerve was lower in the CN traction group than in the control group, but was higher than in the CN crush group (P < 0.05). Nerve fiber number in the dorsal penile nerve was reduced by 2-minute CN traction (P < 0.05). The ratios of collagen to smooth muscle content and the apoptosis were both increased the in 2-minute CN traction group compared with the control group (P < 0.05). The findings indicate that CN traction is an effective CN injury model and the injury it caused is relatively mild compared with the CN crush model. PMID:28982169

Novel particle and radiation sources and advanced materials

NASA Astrophysics Data System (ADS)

Mako, Frederick

2016-03-01

The influence Norman Rostoker had on the lives of those who had the pleasure of knowing him is profound. The skills and knowledge I gained as a graduate student researching collective ion acceleration has fueled a career that has evolved from particle beam physics to include particle and radiation source development and advanced materials research, among many other exciting projects. The graduate research performed on collective ion acceleration was extended by others to form the backbone for laser driven plasma ion acceleration. Several years after graduate school I formed FM Technologies, Inc., (FMT), and later Electron Technologies, Inc. (ETI). Currently, as the founder and president of both FMT and ETI, the Rostoker influence can still be felt. One technology that we developed is a self-bunching RF fed electron gun, called the Micro-Pulse Gun (MPG). The MPG has important applications for RF accelerators and microwave tube technology, specifically clinically improved medical linacs and "green" klystrons. In addition to electron beam and RF source research, knowledge of materials and material interactions gained indirectly in graduate school has blossomed into breakthroughs in materials joining technologies. Most recently, silicon carbide joining technology has been developed that gives robust helium leak tight, high temperature and high strength joints between ceramic-to-ceramic and ceramic-to-metal. This joining technology has the potential to revolutionize the ethylene production, nuclear fuel and solar receiver industries by finally allowing for the practical use of silicon carbide as furnace coils, fuel rods and solar receptors, respectively, which are applications that have been needed for decades.

Novel particle and radiation sources and advanced materials

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mako, Frederick

The influence Norman Rostoker had on the lives of those who had the pleasure of knowing him is profound. The skills and knowledge I gained as a graduate student researching collective ion acceleration has fueled a career that has evolved from particle beam physics to include particle and radiation source development and advanced materials research, among many other exciting projects. The graduate research performed on collective ion acceleration was extended by others to form the backbone for laser driven plasma ion acceleration. Several years after graduate school I formed FM Technologies, Inc., (FMT), and later Electron Technologies, Inc. (ETI). Currently,more » as the founder and president of both FMT and ETI, the Rostoker influence can still be felt. One technology that we developed is a self-bunching RF fed electron gun, called the Micro-Pulse Gun (MPG). The MPG has important applications for RF accelerators and microwave tube technology, specifically clinically improved medical linacs and “green” klystrons. In addition to electron beam and RF source research, knowledge of materials and material interactions gained indirectly in graduate school has blossomed into breakthroughs in materials joining technologies. Most recently, silicon carbide joining technology has been developed that gives robust helium leak tight, high temperature and high strength joints between ceramic-to-ceramic and ceramic-to-metal. This joining technology has the potential to revolutionize the ethylene production, nuclear fuel and solar receiver industries by finally allowing for the practical use of silicon carbide as furnace coils, fuel rods and solar receptors, respectively, which are applications that have been needed for decades.« less

Synthesis and characterization of DNA minor groove binding alkylating agents.

PubMed

Iyer, Prema; Srinivasan, Ajay; Singh, Sreelekha K; Mascara, Gerard P; Zayitova, Sevara; Sidone, Brian; Fouquerel, Elise; Svilar, David; Sobol, Robert W; Bobola, Michael S; Silber, John R; Gold, Barry

2013-01-18

Derivatives of methyl 3-(1-methyl-5-(1-methyl-5-(propylcarbamoyl)-1H-pyrrol-3-ylcarbamoyl)-1H-pyrrol-3-ylamino)-3-oxopropane-1-sulfonate (1), a peptide-based DNA minor groove binding methylating agent, were synthesized and characterized. In all cases, the N-terminus was appended with an O-methyl sulfonate ester, while the C-terminus group was varied with nonpolar and polar side chains. In addition, the number of pyrrole rings was varied from 2 (dipeptide) to 3 (tripeptide). The ability of the different analogues to efficiently generate N3-methyladenine was demonstrated as was their selectivity for minor groove (N3-methyladenine) versus major groove (N7-methylguanine) methylation. Induced circular dichroism studies were used to measure the DNA equilibrium binding properties of the stable sulfone analogues; the tripeptide binds with affinity that is >10-fold higher than that of the dipeptide. The toxicities of the compounds were evaluated in alkA/tag glycosylase mutant E. coli and in human WT glioma cells and in cells overexpressing and under-expressing N-methylpurine-DNA glycosylase, which excises N3-methyladenine from DNA. The results show that equilibrium binding correlates with the levels of N3-methyladenine produced and cellular toxicity. The toxicity of 1 was inversely related to the expression of MPG in both the bacterial and mammalian cell lines. The enhanced toxicity parallels the reduced activation of PARP and the diminished rate of formation of aldehyde reactive sites observed in the MPG knockdown cells. It is proposed that unrepaired N3-methyladenine is toxic due to its ability to directly block DNA polymerization.

Expression of Vesicular Glutamate Transporters Type 1 and 2 in Sensory and Autonomic Neurons Innervating the Mouse Colorectum

PubMed Central

Brumovsky, Pablo R.; Robinson, David R.; La, Jun-Ho; Seroogy, Kim B.; Lundgren, Kerstin H.; Albers, Kathryn M.; Kiyatkin, Michael E.; Seal, Rebecca P.; Edwards, Robert H.; Watanabe, Masahiko; Hökfelt, Tomas; Gebhart, G.F.

2013-01-01

Vesicular glutamate transporters (VGLUTs) have been extensively studied in various neuronal systems, but their expression in visceral sensory and autonomic neurons remains to be analyzed in detail. Here we studied VGLUTs type 1 and 2 (VGLUT1 and VGLUT2, respectively) in neurons innervating the mouse colorectum. Lumbosacral and thoracolumbar dorsal root ganglion (DRG), lumbar sympathetic chain (LSC), and major pelvic ganglion (MPG) neurons innervating the colorectum of BALB/C mice were retrogradely traced with Fast Blue, dissected, and processed for immunohistochemistry. Tissue from additional naïve mice was included. Previously characterized antibodies against VGLUT1, VGLUT2, and calcitonin gene-related peptide (CGRP) were used. Riboprobe in situ hybridization, using probes against VGLUT1 and VGLUT2, was also performed. Most colorectal DRG neurons expressed VGLUT2 and often colocalized with CGRP. A smaller percentage of neurons expressed VGLUT1. VGLUT2-immunoreactive (IR) neurons in the MPG were rare. Abundant VGLUT2-IR nerves were detected in all layers of the colorectum; VGLUT1-IR nerves were sparse. A subpopulation of myenteric plexus neurons expressed VGLUT2 protein and mRNA, but VGLUT1 mRNA was undetectable. In conclusion, we show 1) that most colorectal DRG neurons express VGLUT2, and to a lesser extent, VGLUT1; 2) abundance of VGLUT2-IR fibers innervating colorectum; and 3) a subpopulation of myenteric plexus neurons expressing VGLUT2. Altogether, our data suggests a role for VGLUT2 in colorectal glutamatergic neurotransmission, potentially influencing colorectal sensitivity and motility. PMID:21800314

The Hubble diagram in V for supernovae of Type Ia and the value of H(0) therefrom

NASA Technical Reports Server (NTRS)

Sandage, Allan; Tammann, G. A.

1993-01-01

The Hubble diagram for Type I supernovae is derived in V and is summarized from the literature in B and in m(pg). The ridge line equation of the diagram in V and the calibration of the absolute magnitudes at maximum are presented. The intrinsic (B - V) color at B maximum light is 0.09 +/- 0.04 mag. The Virgo Cluster distance is derived and found to be 23.9 +/- 2.4 Mpc. This Virgo distance gives the cosmic value of the Hubble constant to be H(0) = 47 +/- 5 km/sec per Mpc.

49 CFR Appendix A to Part 531 - Example of Calculating Compliance Under § 531.5(c)

Code of Federal Regulations, 2010 CFR

2010-10-01

...) Transmission class Description Actualmeasured fuel economy (mpg) Volume 1 PC A FWD 1.8 A5 2-door sedan 34.0 1,500 2 PC A FWD 1.8 M6 2-door sedan 34.6 2,000 3 PC A FWD 2.5 A6 4-door wagon 33.8 2,000 4 PC A AWD 1.8 A6 4-door wagon 34.4 1,000 5 PC A AWD 2.5 M6 2-door hatchback 32.9 3,000 6 PC B RWD 2.5 A6 4-door...

Model Year 2013 Fuel Economy Guide: EPA Fuel Economy Estimates

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

2012-12-01

The Fuel Economy Guide is published by the U.S. Department of Energy as an aid to consumers considering the purchase of a new vehicle. The Guide lists estimates of miles per gallon (mpg) for each vehicle available for the new model year. These estimates are provided by the U.S. Environmental Protection Agency in compliance with Federal Law. By using this Guide, consumers can estimate the average yearly fuel cost for any vehicle. The Guide is intended to help consumers compare the fuel economy of similarly sized cars, light duty trucks and special purpose vehicles.

Model Year 2012 Fuel Economy Guide: EPA Fuel Economy Estimates

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

2011-11-01

The Fuel Economy Guide is published by the U.S. Department of Energy as an aid to consumers considering the purchase of a new vehicle. The Guide lists estimates of miles per gallon (mpg) for each vehicle available for the new model year. These estimates are provided by the U.S. Environmental Protection Agency in compliance with Federal Law. By using this Guide, consumers can estimate the average yearly fuel cost for any vehicle. The Guide is intended to help consumers compare the fuel economy of similarly sized cars, light duty trucks and special purpose vehicles.

Model Year 2011 Fuel Economy Guide: EPA Fuel Economy Estimates

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

2010-11-01

The Fuel Economy Guide is published by the U.S. Department of Energy as an aid to consumers considering the purchase of a new vehicle. The Guide lists estimates of miles per gallon (mpg) for each vehicle available for the new model year. These estimates are provided by the U.S. Environmental Protection Agency in compliance with Federal Law. By using this Guide, consumers can estimate the average yearly fuel cost for any vehicle. The Guide is intended to help consumers compare the fuel economy of similarly sized cars, light duty trucks and special purpose vehicles.

Model Year 2017 Fuel Economy Guide: EPA Fuel Economy Estimates

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

The Fuel Economy Guide is published by the U.S. Department of Energy as an aid to consumers considering the purchase of a new vehicle. The Guide lists estimates of miles per gallon (mpg) for each vehicle available for the new model year. These estimates are provided by the U.S. Environmental Protection Agency in compliance with Federal Law. By using this Guide, consumers can estimate the average yearly fuel cost for any vehicle. The Guide is intended to help consumers compare the fuel economy of similarly sized cars, light duty trucks and special purpose vehicles.

Model Year 2018 Fuel Economy Guide: EPA Fuel Economy Estimates

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

The Fuel Economy Guide is published by the U.S. Department of Energy as an aid to consumers considering the purchase of a new vehicle. The Guide lists estimates of miles per gallon (mpg) for each vehicle available for the new model year. These estimates are provided by the U.S. Environmental Protection Agency in compliance with Federal Law. By using this Guide, consumers can estimate the average yearly fuel cost for any vehicle. The Guide is intended to help consumers compare the fuel economy of similarly sized cars, light duty trucks and special purpose vehicles.

Development of Technologies for a High Efficiency, Very Low Emission, Diesel Engine for Light Trucks and Sport Utility Vehicles

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stang, John H.

2005-12-19

Cummins Inc., in partnership with the Department of Energy, has developed technology for a new highly efficient, very low emission, diesel engine for light trucks and sport utility vehicles. This work began in April 1997, and started with very aggressive goals for vehicles in the 5751 to 8500 pound GCW weight class. The primary program goals were as follows: (1) EMISSIONS -- NOx = 0.50 g/mi; PM = 0.05 g/mi; CO = 2.8 g/mi; and NMHC = 0.07 g/mi. California decided to issue new and even tougher LEV II light truck regulations late in 1999. EPA also issued its lowermore » Tier 2 regulations late in 2000. The net result was that the targets for this diesel engine project were lowered, and these goals were eventually modified by the publication of Federal Tier 2 emission standards early in 2000 to the following: NOx = 0.07 g/mi; and PM = 0.01 g/mi. (2) FUEL ECONOMY -- The fuel economy goal was 50 percent MPG improvement (combined city/highway) over the 1997 gasoline powered light truck or sport utility vehicle in the vehicle class for which this diesel engine is being designed to replace. The goal for fuel economy remained at 50 percent MPG improvement, even with the emissions goal revisions. (3) COOPERATIVE DEVELOPMENT -- Regular design reviews of the engine program will be conducted with a vehicle manufacturer to insure that the concepts and design specifics are commercially feasible. (DaimlerChrysler has provided Cummins with this design review input.) Cummins has essentially completed a demonstration of proof-of-principle for a diesel engine platform using advanced combustion and fuel system technologies. Cummins reported very early progress in this project, evidence that new diesel engine technology had been developed that demonstrated the feasibility of the above emissions goals. Emissions levels of NOx = 0.4 g/mi and PM = 0.06 g/mi were demonstrated for a 5250 lb. test weight vehicle with passive aftertreatment only. These results were achieved using the full chassis dynamometer FTP-75 test procedure that allowed compliance with the Tier 2 Interim Bin 10 Standards and would apply to vehicles in MY2004 through MY2007 timeframe. In further technology development with active aftertreatment management, Cummins has been able to report that the emissions goals for the Tier 2 Bin 5 standards were met on an engine running the full FTP-75 test procedure. The fuel economy on the chassis tests was measured at over 59 percent MPG improvement over the gasoline engines that are offered in typical SUVs and light trucks. The above demonstration used only in-cylinder fueling for management of the aftertreatment system.« less

Development of Technologies for a High Efficiency, Very Low Emission, Diesel Engine for Light Trucks and Sport Utility Vehicles

DOE Office of Scientific and Technical Information (OSTI.GOV)

John H. Stang

2005-12-31

Cummins Inc., in partnership with the Department of Energy, has developed technology for a new highly efficient, very low emission, diesel engine for light trucks and sport utility vehicles. This work began in April 1997, and started with very aggressive goals for vehicles in the 5751 to 8500 pound GCW weight class. The primary program goals were as follows: (1) EMISSIONS--NO{sub x} = 0.50 g/mi; PM = 0.05 g/mi; CO = 2.8 g/mi; and NMHC = 0.07 g/mi. California decided to issue new and even tougher LEV II light truck regulations late in 1999. EPA also issued its lower Tiermore » 2 regulations late in 2000. The net result was that the targets for this diesel engine project were lowered, and these goals were eventually modified by the publication of Federal Tier 2 emission standards early in 2000 to the following: NO{sub x} = 0.07 g/mi; and PM = 0.01 g/mi. (2) FUEL ECONOMY--The fuel economy goal was 50 percent MPG improvement (combined city/highway) over the 1997 gasoline powered light truck or sport utility vehicle in the vehicle class for which this diesel engine is being designed to replace. The goal for fuel economy remained at 50 percent MPG improvement, even with the emissions goal revisions. (3) COOPERATIVE DEVELOPMENT--Regular design reviews of the engine program will be conducted with a vehicle manufacturer to insure that the concepts and design specifics are commercially feasible. (DaimlerChrysler has provided Cummins with this design review input.) Cummins has essentially completed a demonstration of proof-of-principle for a diesel engine platform using advanced combustion and fuel system technologies. Cummins reported very early progress in this project, evidence that new diesel engine technology had been developed that demonstrated the feasibility of the above emissions goals. Emissions levels of NOx = 0.4 g/mi and PM = 0.06 g/mi were demonstrated for a 5250 lb. test weight vehicle with passive aftertreatment only. These results were achieved using the full chassis dynamometer FTP-75 test procedure that allowed compliance with the Tier 2 Interim Bin 10 Standards and would apply to vehicles in MY2004 through MY2007 timeframe. In further technology development with active aftertreatment management, Cummins has been able to report that the emissions goals for the Tier 2 Bin 5 standards were met on an engine running the full FTP-75 test procedure. The fuel economy on the chassis tests was measured at over 59 percent MPG improvement over the gasoline engines that are offered in typical SUVs and light trucks. The above demonstration used only in-cylinder fueling for management of the aftertreatment system.« less

Development of Technologies for a High Efficiency, Very Low Emission, Diesel Engine for Light Trucks and Sport Utility Vehicles

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stang, John H.

1997-12-01

Cummins Inc., in partnership with the Department of Energy, has developed technology for a new highly efficient, very low emission, diesel engine for light trucks and sport utility vehicles. This work began in April 1997, and started with very aggressive goals for vehicles in the 5751 to 8500 pound GCW weight class. The primary program goals were as follows: (1) EMISSIONS NOx = 0.50 g/mi PM = 0.05 g/mi CO = 2.8 g/mi NMHC = 0.07 g/mi California decided to issue new and even tougher LEV II light truck regulations late in 1999. EPA also issued its lower Tier 2more » regulations late in 2000. The net result was that the targets for this diesel engine project were lowered, and these goals were eventually modified by the publication of Federal Tier 2 emission standards early in 2000 to the following: NOx = 0.07 g/mi PM = 0.01 g/mi (2) FUEL ECONOMY The fuel economy goal was 50 percent MPG improvement (combined city/highway) over the 1997 gasoline powered light truck or sport utility vehicle in the vehicle class for which this diesel engine is being designed to replace. The goal for fuel economy remained at 50 percent MPG improvement, even with the emissions goal revisions. (3) COOPERATIVE DEVELOPMENT Regular design reviews of the engine program will be conducted with a vehicle manufacturer to insure that the concepts and design specifics are commercially feasible. (DaimlerChrysler has provided Cummins with this design review input.) Cummins has essentially completed a demonstration of proof-of-principle for a diesel engine platform using advanced combustion and fuel system technologies. Cummins reported very early progress in this project, evidence that new diesel engine technology had been developed that demonstrated the feasibility of the above emissions goals. Emissions levels of NOx = 0.4 g/mi and PM = 0.06 g/mi were demonstrated for a 5250 lb. test weight vehicle with passive aftertreatment only. These results were achieved using the full chassis dynamometer FTP-75 test procedure that allowed compliance with the Tier 2 Interim Bin 10 Standards and would apply to vehicles in MY2004 through MY2007 timeframe. In further technology development with active aftertreatment management, Cummins has been able to report that the emissions goals for the Tier 2 Bin 5 standards were met on an engine running the full FTP-75 test procedure. The fuel economy on the chassis tests was measured at over 59 percent MPG improvement over the gasoline engines that are offered in typical SUVs and light trucks. The above demonstration used only in-cylinder fueling for management of the aftertreatment system.« less

Redox and Activation of Protein Kinase A Dysregulates Calcium Homeostasis in Pulmonary Vein Cardiomyocytes of Chronic Kidney Disease.

PubMed

Huang, Shih-Yu; Chen, Yao-Chang; Kao, Yu-Hsun; Hsieh, Ming-Hsiung; Lin, Yung-Kuo; Chen, Shih-Ann; Chen, Yi-Jen

2017-07-12

Chronic kidney disease (CKD) increases the occurrence of atrial fibrillation and pulmonary vein (PV) arrhythmogenesis. Calcium dysregulation and reactive oxygen species (ROS) enhance PV arrhythmogenic activity. The purposes of this study were to investigate whether CKD modulates PV electrical activity through dysregulation of calcium homeostasis and ROS. Biochemical and electrocardiographic studies were conducted in rabbits with and without CKD (induced by 150 mg/kg per day neomycin sulfate and 500 mg/kg per day cefazolin). Confocal microscopy with fluorescence and a whole-cell patch clamp were applied to study calcium homeostasis and electrical activities in control and CKD isolated single PV cardiomyocytes with or without treatment with H89 (1 μmol/L, a protein kinase A inhibitor) and MPG (N-[2-mercaptopropionyl]glycine; 100 μmol/L, a ROS scavenger). The ROS in mitochondria and cytosol were evaluated via intracellular dye fluorescence and lipid peroxidation. CKD rabbits had excessive atrial premature captures over those of control rabbits. Compared with the control, CKD PV cardiomyocytes had a faster beating rate and larger calcium transient amplitudes, sarcoplasmic reticulum calcium contents, sodium/calcium exchanger currents, and late sodium currents but smaller L-type calcium current densities. CKD PV cardiomyocytes had a higher frequency and longer duration of calcium sparks and more ROS in the mitochondria and cytosol than did controls. Moreover, H89 suppressed all calcium sparks in CKD PV cardiomyocytes, and H89- and MPG-treated CKD PV cardiomyocytes had similar calcium transients compared with control PV cardiomyocytes. CKD increases PV arrhythmogenesis with enhanced calcium-handling abnormalities through activation of protein kinase A and ROS. © 2017 The Authors. Published on behalf of the American Heart Association, Inc., by Wiley.

Match and mismatch between opening area and resistance in mild and moderate rheumatic mitral stenosis.

PubMed

El-Dosouky, Ibtesam Ibrahim

2016-12-01

Mitral valve resistance (MVR) is a hemodynamic consequence of mitral stenosis (MS), but it has no clear threshold with a shortage of data to be reliable. We aimed to investigate match and mismatch between opening area and resistance especially in patients with moderate and mild MS. This study comprised 88 patients with moderate and mild rheumatic MS. Transthoracic echocardiographic study estimated the following: mitral valve area (MVA) by both planimetry (2D) and pressure half-time (PHT), mitral valve score (MVS), mean transmitral pressure gradient (MPG), diastolic filling time (DFT), left ventricular out flow tract diameter (LVOTd) and velocity-time integral (LVOTvti), and MVR = MPG/aortic flow ratio [(LVOTd) (LVOTvti)/DFT] in dynes·s/cm 5 . Patients were classified into two groups: group 1 (51 patients) with matched MVR and group 2 (37 patients) with mismatched higher MVR. In the matched group, moderate MS showed MVR <105 dynes·s/cm 5 and <76dynes·s/cm 5 with mild MS. Group 2 compared to group 1 had higher NYHA class (1.4±0.6 vs 1.2±0.4, P<.05) and higher MVS (8.1±1.8 vs 7±0.9, P<.05). MVR showed positive correlation with MVS (r=.5, P<.05), and logistic regression analysis showed that MVS is the only independent predictor of the MVR severity in the mismatched group (i.e., with higher MVR compared to the ROC analysis results) (B±SE=6.997±2.826, t=2.476, 95% CI 1.241±12.752 with an odds ratio=0.412, P<.05). On investigating match and mismatch between opening area and resistance, the only independent predictor of mismatch is the mitral valve score. © 2016, Wiley Periodicals, Inc.

Mitochondrial reactive oxygen species activate the slow force response to stretch in feline myocardium

PubMed Central

Caldiz, Claudia I; Garciarena, Carolina D; Dulce, Raúl A; Novaretto, Leonardo P; Yeves, Alejandra M; Ennis, Irene L; Cingolani, Horacio E; Chiappe de Cingolani, Gladys; Pérez, Néstor G

2007-01-01

When the length of the myocardium is increased, a biphasic response to stretch occurs involving an initial rapid increase in force followed by a delayed slow increase called the slow force response (SFR). Confirming previous findings involving angiotensin II in the SFR, it was blunted by AT1 receptor blockade (losartan). The SFR was accompanied by an increase in reactive oxygen species (ROS) of ∼30% and in intracellular Na+ concentration ([Na+]i) of ∼2.5 mmol l−1 over basal detected by H2DCFDA and SBFI fluorescence, respectively. Abolition of ROS by 2-mercapto-propionyl-glycine (MPG) and EUK8 suppressed the increase in [Na+]i and the SFR, which were also blunted by Na+/H+ exchanger (NHE-1) inhibition (HOE642). NADPH oxidase inhibition (apocynin or DPI) or blockade of the ATP-sensitive mitochondrial potassium channels (5HD or glybenclamide) suppressed both the SFR and the increase in [Na+]i after stretch, suggesting that endogenous angiotensin II activated NADPH oxidase leading to ROS release by the ATP-sensitive mitochondrial potassium channels, which promoted NHE-1 activation. Supporting the notion of ROS-mediated NHE-1 activation, stretch increased the ERK1/2 and p90rsk kinases phosphorylation, effect that was cancelled by losartan. In agreement, the SFR was cancelled by inhibiting the ERK1/2 signalling pathway with PD98059. Angiotensin II at a dose that mimics the SFR (1 nmol l−1) induced an increase in ·O2− production of ∼30–40% detected by lucigenin in cardiac slices, an effect that was blunted by losartan, MPG, apocynin, 5HD and glybenclamide. Taken together the data suggest a pivotal role of mitochondrial ROS in the genesis of the SFR to stretch. PMID:17823205

Nicorandil improves post-fatigue tension in slow skeletal muscle fibers by modulating glutathione redox state.

PubMed

Sánchez-Duarte, E; Trujillo, X; Cortés-Rojo, C; Saavedra-Molina, A; Camargo, G; Hernández, L; Huerta, M; Montoya-Pérez, R

2017-04-01

Fatigue is a phenomenon in which force reduction has been linked to impairment of several biochemical processes. In skeletal muscle, the ATP-sensitive potassium channels (K ATP ) are actively involved in myoprotection against metabolic stress. They are present in sarcolemma and mitochondria (mitoK ATP channels). K + channel openers like nicorandil has been recognized for their ability to protect skeletal muscle from ischemia-reperfusion injury, however, the effects of nicorandil on fatigue in slow skeletal muscle fibers has not been explored, being the aim of this study. Nicorandil (10 μM), improved the muscle function reversing fatigue as increased post-fatigue tension in the peak and total tension significantly with respect to the fatigued condition. However, this beneficial effect was prevented by the mitoK ATP channel blocker 5-hydroxydecanoate (5-HD, 500 μM) and by the free radical scavenger N-2-mercaptopropionyl glycine (MPG, 1 mM), but not by the nitric oxide (NO) synthase inhibitor Nω-nitro-L-arginine methyl ester (L-NAME, 100 μM). Nicorandil also decreased lipid peroxidation and maintained both reduced glutathione (GSH) levels and an elevated GSH/GSSG ratio, whereas total glutathione (TGSH) remained unaltered during post-fatigue tension. In addition, NO production, measured through nitrite concentrations was significantly increased with nicorandil during post-fatigue tension; this increase remained unaltered in the presence of nicorandil plus L-NAME, nonetheless, this effect was reversed with nicorandil plus MPG. Hence, these results suggest that nicorandil improves the muscle function reversing fatigue in slow skeletal muscle fibers of chicken through its effects not only as a mitoK ATP channel opener but also as NO donor and as an antioxidant.

Population genetic variation in the tree fern Alsophila spinulosa (Cyatheaceae): effects of reproductive strategy.

PubMed

Wang, Ting; Su, Yingjuan; Li, Yuan

2012-01-01

Essentially all ferns can perform both sexual and asexual reproduction. Their populations represent suitable study objects to test the population genetic effects of different reproductive systems. Using the diploid homosporous fern Alsophila spinulosa as an example species, the main purpose of this study was to assess the relative impact of sexual and asexual reproduction on the level and structure of population genetic variation. Inter-simple sequence repeats analysis was conducted on 140 individuals collected from seven populations (HSG, LCH, BPC, MPG, GX, LD, and ZHG) in China. Seventy-four polymorphic bands discriminated a total of 127 multilocus genotypes. Character compatibility analysis revealed that 50.0 to 70.0% of the genotypes had to be deleted in order to obtain a tree-like structure in the data set from populations HSG, LCH, MPG, BPC, GX, and LD; and there was a gradual decrease of conflict in the data set when genotypes with the highest incompatibility counts were successively deleted. In contrast, in population ZHG, only 33.3% of genotypes had to be removed to achieve complete compatibility in the data set, which showed a sharp decline in incompatibility upon the deletion of those genotypes. All populations examined possessed similar levels of genetic variation. Population ZHG was not found to be more differentiated than the other populations. Sexual recombination is the predominant source of genetic variation in most of the examined populations of A. spinulosa. However, somatic mutation contributes most to the genetic variation in population ZHG. This change of the primary mode of reproduction does not cause a significant difference in the population genetic composition. Character compatibility analysis represents an effective approach to separate the role of sexual and asexual components in shaping the genetic pattern of fern populations.

Demonstration Project for a Multi-Material Lightweight Prototype Vehicle as Part of the Clean Energy Dialogue with Canada

DOE Office of Scientific and Technical Information (OSTI.GOV)

Skszek, Tim

2015-12-29

The intent of the Multi-Material Lightweight Vehicle (“MMLV”) was to assess the feasibility of achieving a significant level of vehicle mass reduction, enabling engine downsizing resulting in a tangible fuel reduction and environmental benefit. The MMLV project included the development of two (2) lightweight vehicle designs, referred to as Mach-I and Mach-II MMLV variants, based on a 2013 Ford production C/D segment production vehicle (Fusion). Weight comparison, life cycle assessment and limited full vehicle testing are included in the project scope. The Mach-I vehicle variant was comprised of materials and processes that are commercially available or previously demonstrated. The 363more » kg mass reduction associated with the Mach-I design enabled use of a one-liter, three-cylinder, gasoline turbocharged direct injection engine, maintaining the performance and utility of the baseline vehicle. The full MMLV project produced seven (7) MMLV Mach-I “concept vehicles” which were used for testing and evaluation. The full vehicle tests confirmed that MMLV Mach-I concept vehicle performed approximately equivalent to the baseline 2013 Ford Fusion vehicle thereby validating the design of the multi material lightweight vehicle design. The results of the Life Cycle Assessment, conducted by third party consultant, indicated that if the MMLV Mach-I design was built and operated in North America for 250,000 km (155,343 miles) it would produce significant environmental and fuel economy benefits including a 16% reduction in Global Warming Potential (GWP) and 16% reduction in Total Primary Energy (TPE). The LCA calculations estimated the combined fuel economy of 34 mpg (6.9 l/100 km) associated with the MMLV Mach-I Design compared to 28 mpg (8.4 l/100 km) for the 2013 Ford Fusion.« less

Analysis of regenerated single-shaft ceramic gas-turbine engines and resulting fuel economy in a compact car

NASA Technical Reports Server (NTRS)

Klann, J. L.; Tew, R. C., Jr.

1977-01-01

Ranges in design and off-design operating conditions of an advanced gas turbine and their effects on fuel economy were analyzed. The assumed engine incorporated a single stage radial flow turbine and compressor with fixed geometry. Fuel economies were calculated over the composite driving cycle with gasoline as the fuel. At a constant turbine-inlet temperature, with a regenerator sized for a full power effectiveness the best fuel economies ranged from 11.1 to 10.2 km/liter (26.2 to 22.5 mpg) for full power turbine tip speeds of 770 to 488m/sec (2530 to 1600ft/sec), respectively.

PyFDAP: automated analysis of fluorescence decay after photoconversion (FDAP) experiments.

PubMed

Bläßle, Alexander; Müller, Patrick

2015-03-15

We developed the graphical user interface PyFDAP for the fitting of linear and non-linear decay functions to data from fluorescence decay after photoconversion (FDAP) experiments. PyFDAP structures and analyses large FDAP datasets and features multiple fitting and plotting options. PyFDAP was written in Python and runs on Ubuntu Linux, Mac OS X and Microsoft Windows operating systems. The software, a user guide and a test FDAP dataset are freely available for download from http://people.tuebingen.mpg.de/mueller-lab. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Relations between elliptic multiple zeta values and a special derivation algebra

NASA Astrophysics Data System (ADS)

Broedel, Johannes; Matthes, Nils; Schlotterer, Oliver

2016-04-01

We investigate relations between elliptic multiple zeta values (eMZVs) and describe a method to derive the number of indecomposable elements of given weight and length. Our method is based on representing eMZVs as iterated integrals over Eisenstein series and exploiting the connection with a special derivation algebra. Its commutator relations give rise to constraints on the iterated integrals over Eisenstein series relevant for eMZVs and thereby allow to count the indecomposable representatives. Conversely, the above connection suggests apparently new relations in the derivation algebra. Under https://tools.aei.mpg.de/emzv we provide relations for eMZVs over a wide range of weights and lengths.

Automotive Stirling engine: Mod 2 design report

NASA Technical Reports Server (NTRS)

Nightingale, Noel P.

1986-01-01

The design of an automotive Stirling engine that achieves the superior fuel economy potential of the Stirling cycle is described. As the culmination of a 9-yr development program, this engine, designated the Mod 2, also nullifies arguments that Stirling engines are heavy, expensive, unreliable, demonstrating poor performance. Installed in a General Motors Chevrolet Celebrity car, this engine has a predicted combined fuel economy on unleaded gasoline of 17.5 km/l (41 mpg)- a value 50% above the current vehicle fleet average. The Mod 2 Stirling engine is a four-cylinder V-drive design with a single crankshaft. The engine is also equipped with all the controls and auxiliaries necessary for automotive operation.

Engineering analysis of shortfall for new technologies. Analysis memorandum

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1981-03-11

The engineering principles that govern the mpg performance of alternative technologies on the EPA test procedure and under in-use conditions are examined. The results can be used to interpret the shortfall of alternative technologies derived from statistical analyses. The analysis examines each of the four technologies in comparison to the conventional technology counterpart. Manual transmissions are compared to automatics, fuel injected S.I. engines to carburetted S.I. engines, front-wheel drive vehicles to rear-wheel drive vehicles and diesel engines to carburetted S.I. engines. The changes in shortfall of the four technologies in comparison to conventional technologies are explained through differences in responsesmore » to the factors.« less

Identifications and limited spectroscopy for Luyten common proper motion stars with probable white dwarf components. I - Pair brighter than 17th magnitude

NASA Technical Reports Server (NTRS)

Oswalt, Terry D.; Hintzen, Paul M.; Luyten, Willem J.

1988-01-01

Identifications are provided for 103 bright Luyten common proper motion (CPM) stellar systems with m(pg) less than 17.0 mag containing likely white dwarf (WD) components. New spectral types are presented for 55 components, and spectral types for 51 more are available in the literature. With the CPM systems previously published by Giclas et al. (1978), the Luyten stars provide a uniform sample of nearly 200 pairs or multiples brighter than 17h magnitude. Selection effects biasing the combined samples are discussed; in particular, evidence is presented that fewer than 1 percent of wide WD binaries have been detected.

Development & optimization of a rule-based energy management strategy for fuel economy improvement in hybrid electric vehicles

NASA Astrophysics Data System (ADS)

Asfoor, Mostafa

The gradual decline of oil reserves and the increasing demand for energy over the past decades has resulted in automotive manufacturers seeking alternative solutions to reduce the dependency on fossil-based fuels for transportation. A viable technology that enables significant improvements in the overall energy conversion efficiencies is the hybridization of conventional vehicle drive systems. This dissertation builds on prior hybrid powertrain development at the University of Idaho. Advanced vehicle models of a passenger car with a conventional powertrain and three different hybrid powertrain layouts were created using GT-Suite. These different powertrain models were validated against a variety of standard driving cycles. The overall fuel economy, energy consumption, and losses were monitored, and a comprehensive energy analysis was performed to compare energy sources and sinks. The GT-Suite model was then used to predict the formula hybrid SAE vehicle performance. Inputs to this model were a numerically predicted engine performance map, an electric motor torque curve, vehicle geometry, and road load parameters derived from a roll-down test. In this case study, the vehicle had a supervisory controller that followed a rule-based energy management strategy to insure a proper power split during hybrid mode operation. The supervisory controller parameters were optimized using discrete grid optimization method that minimized the total amount of fuel consumed during a specific urban driving cycle with an average speed of approximately 30 [mph]. More than a 15% increase in fuel economy was achieved by adding supervisory control and managing power split. The vehicle configuration without the supervisory controller displayed a fuel economy of 25 [mpg]. With the supervisory controller this rose to 29 [mpg]. Wider applications of this research include hybrid vehicle controller designs that can extend the range and survivability of military combat platforms. Furthermore, the GT-Suite model can be easily accommodated to simulate propulsion systems that store regenerative power when braking, making it available for acceleration and off-road maneuvering.

Genome-scale strain designs based on regulatory minimal cut sets.

PubMed

Mahadevan, Radhakrishnan; von Kamp, Axel; Klamt, Steffen

2015-09-01

Stoichiometric and constraint-based methods of computational strain design have become an important tool for rational metabolic engineering. One of those relies on the concept of constrained minimal cut sets (cMCSs). However, as most other techniques, cMCSs may consider only reaction (or gene) knockouts to achieve a desired phenotype. We generalize the cMCSs approach to constrained regulatory MCSs (cRegMCSs), where up/downregulation of reaction rates can be combined along with reaction deletions. We show that flux up/downregulations can virtually be treated as cuts allowing their direct integration into the algorithmic framework of cMCSs. Because of vastly enlarged search spaces in genome-scale networks, we developed strategies to (optionally) preselect suitable candidates for flux regulation and novel algorithmic techniques to further enhance efficiency and speed of cMCSs calculation. We illustrate the cRegMCSs approach by a simple example network and apply it then by identifying strain designs for ethanol production in a genome-scale metabolic model of Escherichia coli. The results clearly show that cRegMCSs combining reaction deletions and flux regulations provide a much larger number of suitable strain designs, many of which are significantly smaller relative to cMCSs involving only knockouts. Furthermore, with cRegMCSs, one may also enable the fine tuning of desired behaviours in a narrower range. The new cRegMCSs approach may thus accelerate the implementation of model-based strain designs for the bio-based production of fuels and chemicals. MATLAB code and the examples can be downloaded at http://www.mpi-magdeburg.mpg.de/projects/cna/etcdownloads.html. krishna.mahadevan@utoronto.ca or klamt@mpi-magdeburg.mpg.de Supplementary data are available at Bioinformatics online. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Platypus globin genes and flanking loci suggest a new insertional model for beta-globin evolution in birds and mammals.

PubMed

Patel, Vidushi S; Cooper, Steven J B; Deakin, Janine E; Fulton, Bob; Graves, Tina; Warren, Wesley C; Wilson, Richard K; Graves, Jennifer A M

2008-07-25

Vertebrate alpha (alpha)- and beta (beta)-globin gene families exemplify the way in which genomes evolve to produce functional complexity. From tandem duplication of a single globin locus, the alpha- and beta-globin clusters expanded, and then were separated onto different chromosomes. The previous finding of a fossil beta-globin gene (omega) in the marsupial alpha-cluster, however, suggested that duplication of the alpha-beta cluster onto two chromosomes, followed by lineage-specific gene loss and duplication, produced paralogous alpha- and beta-globin clusters in birds and mammals. Here we analyse genomic data from an egg-laying monotreme mammal, the platypus (Ornithorhynchus anatinus), to explore haemoglobin evolution at the stem of the mammalian radiation. The platypus alpha-globin cluster (chromosome 21) contains embryonic and adult alpha- globin genes, a beta-like omega-globin gene, and the GBY globin gene with homology to cytoglobin, arranged as 5'-zeta-zeta'-alphaD-alpha3-alpha2-alpha1-omega-GBY-3'. The platypus beta-globin cluster (chromosome 2) contains single embryonic and adult globin genes arranged as 5'-epsilon-beta-3'. Surprisingly, all of these globin genes were expressed in some adult tissues. Comparison of flanking sequences revealed that all jawed vertebrate alpha-globin clusters are flanked by MPG-C16orf35 and LUC7L, whereas all bird and mammal beta-globin clusters are embedded in olfactory genes. Thus, the mammalian alpha- and beta-globin clusters are orthologous to the bird alpha- and beta-globin clusters respectively. We propose that alpha- and beta-globin clusters evolved from an ancient MPG-C16orf35-alpha-beta-GBY-LUC7L arrangement 410 million years ago. A copy of the original beta (represented by omega in marsupials and monotremes) was inserted into an array of olfactory genes before the amniote radiation (>315 million years ago), then duplicated and diverged to form orthologous clusters of beta-globin genes with different expression profiles in different lineages.

Experimental Investigation of Spark-Ignited Combustion with High-Octane Biofuels and EGR. 1. Engine Load Range and Downsize Downspeed Opportunity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Splitter, Derek A; Szybist, James P

2013-01-01

The present study experimentally investigates spark-ignited combustion with 87 AKI E0 gasoline in its neat form and in midlevel alcohol gasoline blends with 24% vol/vol isobutanol gasoline (IB24) and 30% vol/vol ethanol gasoline (E30). A single-cylinder research engine was used with an 11.85:1 compression ratio, hydraulically actuated valves, laboratory intake air, and was capable of external exhaust gas recirculation (EGR). Experiments were conducted with all fuels to full-load conditions with = 1, using both 0% and 15% external cooled EGR. Higher octane number biofuel blends exhibited increased stoichiometric torque capability at this compression ratio, where the unique properties of ethanolmore » enabled a doubling of the stoichiometric torque capability with E30 as compared to 87 AKI, up to 20 bar IMEPg (indicated mean effective pressure gross) at = 1. EGR provided thermodynamic advantages and was a key enabler for increasing engine efficiency for all fuel types. However, with E30, EGR was less useful for knock mitigation than gasoline or IB24. Torque densities with E30 with 15% EGR at = 1 operation were similar or better than a modern EURO IV calibration turbo-diesel engine. The results of the present study suggest that it could be possible to implement a 40% downsize + downspeed configuration (1.2 L engine) into a representative midsize sedan. For example, for a midsize sedan at a 65 miles/h cruise, an estimated fuel consumption of 43.9 miles per gallon (MPG) (engine out 102 g-CO2/km) could be achieved with similar reserve power to a 2.0 L engine with 87AKI (38.6 MPG, engine out 135 g-CO2/km). Data suggest that, with midlevel alcohol gasoline blends, engine and vehicle optimization can offset the reduced fuel energy content of alcohol gasoline blends and likely reduce vehicle fuel consumption and tailpipe CO2 emissions.« less

Requirements for the admission of medical products made of NiTinol according to the German Medical Products Act (MPG).

PubMed

Frey-Köppel

2004-08-01

This paper describes the procedure in placing a medical product on the market. Since June 1998, medical products must have the CE label according to the directive 93/42 EEC. This means that all medical products must fulfill the essential requirements according to Annex I of this directive. Assessments and certifications are made by so-called Notified Bodies. Medical products are classified into four classes: Classes I, IIa, IIb, and III. There exist 18 classification rules. Biocompatibility of a product must be demonstrated. The standard EN ISO 10993-1 Biological Assessment of Medical Products informs about the type and scope of the tests. The place of application and body contact time are criteria for the tests to be performed. Biocompatibility of NiTinol may be assessed on the basis of clinical data/literature. Clinical suitability of a medical product must also be demonstrated. This can be done by assessing scientific literature or performing clinical tests or by combining both methods. The prerequisites for a clinical test of medical products are outlined among others by Article 20, MPG (General Prerequisites for Clinical Testing). MEDDEV 2.7.1, Evaluation of Clinical Data, represents the guideline for the processing of clinical data. Custom-made products are products intended for a specific patient and manufactured especially for this patient according to a given specification. Custom-made products may be used without a CE label and, hence, are not subjected to assessing by a Notified Body but have to fulfill the essential requirements and must also be documented accordingly. According to the directive 93/42 EEC, the person responsible for placing the product on the market under its own name and CE-label is deemed the manufacturer, even if the product has been manufactured completely by another company.

The impact of feeding growing-finishing pigs with daily tailored diets using precision feeding techniques on animal performance, nutrient utilization, and body and carcass composition.

PubMed

Andretta, I; Pomar, C; Rivest, J; Pomar, J; Lovatto, P A; Radünz Neto, J

2014-09-01

The impact of moving from conventional to precision feeding systems in growing-finishing pig operations on animal performance, nutrient utilization, and body and carcass composition was studied. Fifteen animals per treatment for a total of 60 pigs of 41.2 (SE = 0.5) kg of BW were used in a performance trial (84 d) with 4 treatments: a 3-phase (3P) feeding program obtained by blending fixed proportions of feeds A (high nutrient density) and B (low nutrient density); a 3-phase commercial (COM) feeding program; and 2 daily-phase feeding programs in which the blended proportions of feeds A and B were adjusted daily to meet the estimated nutritional requirements of the group (multiphase-group feeding, MPG) or of each pig individually (multiphase-individual feeding, MPI). Daily feed intake was recorded each day and pigs were weighed weekly during the trial. Body composition was assessed at the beginning of the trial and every 28 d by dual-energy X-ray densitometry. Nitrogen and phosphorus excretion was estimated as the difference between retention and intake. Organ, carcass, and primal cut measurements were taken after slaughter. The COM feeding program reduced (P < 0.05) ADFI and improved G:F rate in relation to other treatments. The MPG and MPI programs showed values for ADFI, ADG, G:F, final BW, and nitrogen and phosphorus retention that were similar to those obtained for the 3P feeding program. However, compared with the 3P treatment, the MPI feeding program reduced the standardized ileal digestible lysine intake by 27%, the estimated nitrogen excretion by 22%, and the estimated phosphorus excretion by 27% (P < 0.05). Organs, carcass, and primal cut weights did not differ among treatments. Feeding growing-finishing pigs with daily tailored diets using precision feeding techniques is an effective approach to reduce nutrient excretion without compromising pig performance or carcass composition.

Infrared galaxies in the IRAS minisurvey

NASA Technical Reports Server (NTRS)

Soifer, B. T.; Neugebauer, G.; Rowan-Robinson, M.; Clegg, P. E.; Emerson, J. P.; Houck, J. R.; De Jong, T.; Aumann, H. H.; Beichman, C. A.; Boggess, N.

1984-01-01

A total of 86 galaxies have been detected at 60 microns in the high galactic latitude portion of the IRAS minisurvey. The surface density of detected galaxies with flux densities greater than 0.5 Jy is 0.25 sq deg. Virtually all the galaxies detected are spiral galaxies and have an infrared to blue luminosity ratio ranging from 50 to 0.5. For the infrared-selected sample, no obvious correlation exists between infrared excess and color temperature. The infrared flux from 10 to 100 microns contributes approximately 5 percent of the blue luminosity for galaxies in the magnitude range 14 less than m(pg) less than 18 mag. The fraction of interacting galaxies is between one-eighth and one-fourth of the sample.

VizieR Online Data Catalog: HeI 5876 & 10830Å EWs of solar-type stars (Andretta+, 2017)

NASA Astrophysics Data System (ADS)

Andretta, V.; Giampapa, M. S.; Covino, E.; Reiners, A.; Beeck, B.

2017-11-01

A total of 134 FEROS spectra (R=48000) of our targets (including telluric standards) were acquired on the night of UT 2011 December 6-7; spectral coverage from 3500 to 9200Å. The Fiber Extended-range Optical Spectrograph (FEROS) was mounted at the 2.2m Max-Planck Gesellschaft/European Southern Observatory (MPG/ESO) telescope at La Silla (Chile). The HeIλ10830 spectroscopic observations were carried out on the same night as the FEROS D3 observations, using the CRyogenic high-resolution InfraRed Echelle Spectrograph (CRIRES), mounted at Unit Telescope 1 (Antu) of the VLT array at Cerro Paranal. The details of the observations is given in table 1. (3 data files).

Methods for evaluating and ranking transportation energy conservation programs

NASA Astrophysics Data System (ADS)

Santone, L. C.

1981-04-01

The energy conservation programs are assessed in terms of petroleum savings, incremental costs to consumers probability of technical and market success, and external impacts due to environmental, economic, and social factors. Three ranking functions and a policy matrix are used to evaluate the programs. The net present value measure which computes the present worth of petroleum savings less the present worth of costs is modified by dividing by the present value of DOE funding to obtain a net present value per program dollar. The comprehensive ranking function takes external impacts into account. Procedures are described for making computations of the ranking functions and the attributes that require computation. Computations are made for the electric vehicle, Stirling engine, gas turbine, and MPG mileage guide program.

Model Year 2014 Fuel Economy Guide: EPA Fuel Economy Estimates

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

2013-12-01

The Fuel Economy Guide is published by the U.S. Department of Energy as an aid to consumers considering the purchase of a new vehicle. The Guide lists estimates of miles per gallon (mpg) for each vehicle available for the new model year. These estimates are provided by the U.S. Environmental Protection Agency in compliance with Federal Law. By using this Guide, consumers can estimate the average yearly fuel cost for any vehicle. The Guide is intended to help consumers compare the fuel economy of similarly sized cars, light duty trucks and special purpose vehicles. The vehicles listed have been dividedmore » into three classes of cars, three classes of light duty trucks, and three classes of special purpose vehicles.« less

Model Year 2015 Fuel Economy Guide: EPA Fuel Economy Estimates

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

2014-12-01

The Fuel Economy Guide is published by the U.S. Department of Energy as an aid to consumers considering the purchase of a new vehicle. The Guide lists estimates of miles per gallon (mpg) for each vehicle available for the new model year. These estimates are provided by the U.S. Environmental Protection Agency in compliance with Federal Law. By using this Guide, consumers can estimate the average yearly fuel cost for any vehicle. The Guide is intended to help consumers compare the fuel economy of similarly sized cars, light duty trucks and special purpose vehicles. The vehicles listed have been dividedmore » into three classes of cars, three classes of light duty trucks, and three classes of special purpose vehicles.« less

Model Year 2016 Fuel Economy Guide: EPA Fuel Economy Estimates

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

The Fuel Economy Guide is published by the U.S. Department of Energy as an aid to consumers considering the purchase of a new vehicle. The Guide lists estimates of miles per gallon (mpg) for each vehicle available for the new model year. These estimates are provided by the U.S. Environmental Protection Agency in compliance with Federal Law. By using this Guide, consumers can estimate the average yearly fuel cost for any vehicle. The Guide is intended to help consumers compare the fuel economy of similarly sized cars, light duty trucks and special purpose vehicles. The vehicles listed have been dividedmore » into three classes of cars, three classes of light duty trucks, and three classes of special purpose vehicles.« less

VizieR Online Data Catalog: Light curves of WASP-52 (Mancini+, 2017)

NASA Astrophysics Data System (ADS)

Mancini, L.; Southworth, J.; Raia, G.; Tregloan-Reed, J.; Molliere, P.; Bozza, V.; Bretton, M.; Bruni, I.; Ciceri, S.; D'Ago, G.; Dominik, M.; Hinse, T. C.; Hundertmark, M.; Jorgensen, U. G.; Korhonen, H.; Rabus, M.; Rahvar, S.; Starkey, D.; Calchi Novati, S.; Figuera Jaimes, R.; Henning, T.; Juncher, D.; Haugbolle, T.; Kains, N.; Popovas, A.; Schmidt, R. W.; Skottfelt, J.; Snodgrass, C.; Surdej, J.; Wertz, O.

2018-03-01

Light curves of transit events of the extrasolar planet WASP-52b. One of the datasets was obtained using the Cassini 1.52m Telescope (Gunn r) at the Astronomical Observatory of Bologna in Loiano (Italy). Three of the datasets were obtained using the Zeiss 1.23m telescope (Cousins R and Cousins I) at the German-Spanish Astronomical Centre at Calar Alto (Spain). Four of the datasets were obtained using the MPG 2.2m telescope (Sloan g, Sloan r, Sloan i, Sloan z) at the ESO Observatory in La Silla (Chile). Four of the datasets were obtained using the 1.54m Danish Telescope at the ESO Observatory in La Silla (Chile). (2 data files).

Stress Corrosion Cracking Issues in Light Metals for Automotive Applications

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jones, Russell H.; Danielson, Michael J.; Baer, Donald R.

The Partnership for New Generation Vehicle has the goal of producing lightweight automobiles that achieve 80 mpg. To accomplish this will require liberal use of Al and Mg alloys such as AA5083 and AZ91D. The corrosion and stress corrosion of alloy AA5083 is controlled by the precipitation of the b-phase (Al3Mg2) at grain boundaries and by the precipitation of the g-phase (Mg17Al12) in AZ91D. The b-phase is anodic to the Al matrix while the g-phase is cathodic to the Mg matrix. The effects of crack propagation along grain boundaries with electrochemically active particles is a key factor in the SCCmore » performance of these materials.« less

PEITH(Θ): perfecting experiments with information theory in Python with GPU support.

PubMed

Dony, Leander; Mackerodt, Jonas; Ward, Scott; Filippi, Sarah; Stumpf, Michael P H; Liepe, Juliane

2018-04-01

Different experiments provide differing levels of information about a biological system. This makes it difficult, a priori, to select one of them beyond mere speculation and/or belief, especially when resources are limited. With the increasing diversity of experimental approaches and general advances in quantitative systems biology, methods that inform us about the information content that a given experiment carries about the question we want to answer, become crucial. PEITH(Θ) is a general purpose, Python framework for experimental design in systems biology. PEITH(Θ) uses Bayesian inference and information theory in order to derive which experiments are most informative in order to estimate all model parameters and/or perform model predictions. https://github.com/MichaelPHStumpf/Peitho. m.stumpf@imperial.ac.uk or juliane.liepe@mpibpc.mpg.de.

Arterial compliance probe for local blood pulse wave velocity measurement.

PubMed

Nabeel, P M; Joseph, Jayaraj; Sivaprakasam, Mohanasankar

2015-08-01

Arterial compliance and vessel wall dynamics are significant in vascular diagnosis. We present the design of arterial compliance probes for measurement of local pulse wave velocity (PWV). Two designs of compliance probe are discussed, viz (a) a magnetic plethysmograph (MPG) based probe, and (b) a photoplethysmograph (PPG) based probe. The ability of the local PWV probes to consistently capture carotid blood pulse waves is verified by in-vivo trials on few volunteers. The probes could reliably perform repeatable measurements of local PWV from carotid artery along small artery sections less than 20 mm. Further, correlation between the measured values of local PWV using probes and various measures of blood pressure (BP) was also investigated. The study indicates that such arterial compliance probes have strong potential in cuff less BP monitoring.

Data mining in newt-omics, the repository for omics data from the newt.

PubMed

Looso, Mario; Braun, Thomas

2015-01-01

Salamanders are an excellent model organism to study regenerative processes due to their unique ability to regenerate lost appendages or organs. Straightforward bioinformatics tools to analyze and take advantage of the growing number of "omics" studies performed in salamanders were lacking so far. To overcome this limitation, we have generated a comprehensive data repository for the red-spotted newt Notophthalmus viridescens, named newt-omics, merging omics style datasets on the transcriptome and proteome level including expression values and annotations. The resource is freely available via a user-friendly Web-based graphical user interface ( http://newt-omics.mpi-bn.mpg.de) that allows access and queries to the database without prior bioinformatical expertise. The repository is updated regularly, incorporating new published datasets from omics technologies.

VizieR Online Data Catalog: A K-selected catalog of the ECDFS from MUSYC (Taylor+, 2009)

NASA Astrophysics Data System (ADS)

Taylor, E. N.; Franx, M.; van Dokkum, P. G.; Quadri, R. F.; Gawiser, E.; Bell, E. F.; Barrientos, L. F.; Blanc, G. A.; Castander, F. J.; Damen, M.; Gonzalez-Perez, V.; Hall, P. B.; Herrera, D.; Hildebrandt, H.; Kriek, M.; Labbe, I.; Lira, P.; Maza, J.; Rudnick, G.; Treister, E.; Urry, C. M.; Willis, J. P.; Wuyts, S.

2010-01-01

Hildebrandt et al. (2006A&A...452.1121H) have collected all (up until 2005 December) archival UU38BRVI imaging data taken using the Wide Field Imager (WFI) on the ESO MPG 2.2m telescope. We have supplemented the WFI optical data with original z'-band imaging taken using Mosaic-II camera on the CTIO 4m Blanco telescope. The ECDFS data were taken in 2005 January. The new MUSYC NIR imaging consists of two mosaics in the J and K bands obtained using the Infrared Sideport Imager (ISPI) on the CTIO Blanco 4m telescope. The data were taken over the course of 15 nights, in 4 separate observing runs between 2003 January and 2004 February. (3 data files).

Haemodynamic and anatomic progression of aortic stenosis.

PubMed

Nguyen, Virginia; Cimadevilla, Claire; Estellat, Candice; Codogno, Isabelle; Huart, Virginie; Benessiano, Joelle; Duval, Xavier; Pibarot, Philippe; Clavel, Marie Annick; Enriquez-Sarano, Maurice; Vahanian, Alec; Messika-Zeitoun, David

2015-06-01

Aortic valve stenosis (AS) is a progressive disease, but the impact of baseline AS haemodynamic or anatomic severity on AS progression remains unclear. In 149 patients (104 mild AS, 36 moderate AS and 9 severe AS) enrolled in 2 ongoing prospective cohorts (COFRASA/GENERAC), we evaluated AS haemodynamic severity at baseline and yearly, thereafter, using echocardiography (mean pressure gradient (MPG)) and AS anatomic severity using CT (degree of aortic valve calcification (AVC)). After a mean follow-up of 2.9±1.0 years, mean MGP increased from 22±11 to 30±16 mm Hg (+3±3 mm Hg/year), and mean AVC from 1108±891 to 1640±1251 AU (arbitrary units) (+188±176 AU/year). Progression of AS was strongly related to baseline haemodynamic severity (+2±3 mm Hg/year in mild AS, +4±3 mm Hg/year in moderate AS and +5±5 mm Hg/year in severe AS (p=0.01)), and baseline haemodynamic severity was an independent predictor of haemodynamic progression (p=0.0003). Annualised haemodynamic and anatomic progression rates were significantly correlated (r=0.55, p<0.0001), but AVC progression rate was also significantly associated with baseline haemodynamic severity (+141±133 AU/year in mild AS, +279±189 AU/year in moderate AS and +361±293 AU/year in severe AS, p<0.0001), and both baseline MPG and baseline AVC were independent determinants of AVC progression (p<0.0001). AS progressed faster with increasing haemodynamic or anatomic severity. Our results suggest that a medical strategy aimed at preventing AVC progression may be useful in all subsets of patients with AS including those with severe AS and support the recommended closer follow-up of patients with AS as AS severity increases. COFRASA (clinicalTrial.gov number NCT 00338676) and GENERAC (clinicalTrial.gov number NCT00647088). Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions.

Platypus globin genes and flanking loci suggest a new insertional model for beta-globin evolution in birds and mammals

PubMed Central

Patel, Vidushi S; Cooper, Steven JB; Deakin, Janine E; Fulton, Bob; Graves, Tina; Warren, Wesley C; Wilson, Richard K; Graves, Jennifer AM

2008-01-01

Background Vertebrate alpha (α)- and beta (β)-globin gene families exemplify the way in which genomes evolve to produce functional complexity. From tandem duplication of a single globin locus, the α- and β-globin clusters expanded, and then were separated onto different chromosomes. The previous finding of a fossil β-globin gene (ω) in the marsupial α-cluster, however, suggested that duplication of the α-β cluster onto two chromosomes, followed by lineage-specific gene loss and duplication, produced paralogous α- and β-globin clusters in birds and mammals. Here we analyse genomic data from an egg-laying monotreme mammal, the platypus (Ornithorhynchus anatinus), to explore haemoglobin evolution at the stem of the mammalian radiation. Results The platypus α-globin cluster (chromosome 21) contains embryonic and adult α- globin genes, a β-like ω-globin gene, and the GBY globin gene with homology to cytoglobin, arranged as 5'-ζ-ζ'-αD-α3-α2-α1-ω-GBY-3'. The platypus β-globin cluster (chromosome 2) contains single embryonic and adult globin genes arranged as 5'-ε-β-3'. Surprisingly, all of these globin genes were expressed in some adult tissues. Comparison of flanking sequences revealed that all jawed vertebrate α-globin clusters are flanked by MPG-C16orf35 and LUC7L, whereas all bird and mammal β-globin clusters are embedded in olfactory genes. Thus, the mammalian α- and β-globin clusters are orthologous to the bird α- and β-globin clusters respectively. Conclusion We propose that α- and β-globin clusters evolved from an ancient MPG-C16orf35-α-β-GBY-LUC7L arrangement 410 million years ago. A copy of the original β (represented by ω in marsupials and monotremes) was inserted into an array of olfactory genes before the amniote radiation (>315 million years ago), then duplicated and diverged to form orthologous clusters of β-globin genes with different expression profiles in different lineages. PMID:18657265

Around 1500 near-Earth-asteroid orbits improved via EURONEAR

NASA Astrophysics Data System (ADS)

Vaduvescu, O.; Hudin, L.; Birlan, M.; Popescu, M.; Tudorica, A.; Toma, R.

2014-07-01

Born in 2006 in Paris, the European Near Earth Asteroids Research project (EURONEAR, euronear.imcce.fr) aims ''to study NEAs and PHAs using existing telescopes available to its network and hopefully in the future some automated dedicated 1--2 m facilities''. Although we believe the first aim is fulfilled, the second was not achieved yet, requiring serious commitment from the European NEA researchers and funding agencies. Mainly using free labor by about 30 students and amateur astronomers (from Romania, Chile, UK, France, etc), the PI backed up by his associates M. Birlan (IMCCE Paris) and J. Licandro (IAC Tenerife) and a few other astronomers of the EURONEAR network having access to a few telescopes are approaching around 1,500 observed NEAs whose orbits were improved based on our astrometric contributions. To achive this milestone, we used two main resources and a total of 15 facilities: i) Observing time obtained at 11 professional 1--4 m class telescopes (Chile, La Palma, France, Germany) plus 3 smaller 30--50 cm educational/public outreach telescopes (Romania and Germany) adding about 1,000 observed NEAs; and ii) astrometry obtained from data mining of 4 major image archives (ESO/MPG WFI, INT WFC, CFHTLS Megacam and Subaru SuprimeCam) adding about 500 NEAs recovered in archival images. Among the highlights, about 100 NEAs, PHAs and VIs were observed, recovered or precovered in archives at their second opposition (up to about 15 years away from discovery) or have their orbital arc much extended, and a few VIs and PHAs were eliminated. Incidentally, about 15,000 positions of almost 2,000 known MBAs were reported (mostly in the INT, ESO/MPG and Blanco large fields). About 40 new (one night) NEO candidates and more than 2,000 (one night) unknown MBAs were reported, including about 150 MBAs credited as EURONEAR discoveries. Based on the INT and Blanco data we derived some statistics about the MBA and NEA population observable with 2m and 4m telescopes, proposing a model to rate the NEO candidates observed close to opposition. Based on this work, 10 papers and around 100 MPC circulars were published since 2006.

Greenhouse Gas Exchange in Small Arctic Thaw Ponds

NASA Astrophysics Data System (ADS)

Laurion, I.; Bégin, P. N.; Bouchard, F.; Preskienis, V.

2014-12-01

Arctic lakes and ponds can represent up to one quarter of the land surface in permafrost landscapes, particularly in lowland tundra landscapes characterized by ice wedge organic polygons. Thaw ponds can be defined as the aquatic ecosystems associated to thawing of organic soils, either resulting from active layer processes and located above low-center peat polygons (hereafter low-center polygonal or LCP ponds), or resulting from thermokarst slumping above melting ice wedges linked to the accelerated degradation of permafrost (hereafter ice-wedge trough or IWT ponds). These ponds can merge together forming larger water bodies, but with relatively stable shores (hereafter merged polygonal or MPG ponds), and with limnological characteristics similar to LCP ponds. These aquatic systems are very small and shallow, and present a different physical structure than the larger thermokarst lakes, generated after years of development and land subsidence. In a glacier valley on Bylot Island, Nunavut, Canada, thermokarst and kettle lakes together represent 29% of the aquatic area, with a thermal profile resembling those of more standard arctic lakes (mixed epilimnion). The IWT ponds (44% of the area) are stratified for a large fraction of the summer despite their shallowness, while LCP and MPG ponds (27% of the area) show a more homogeneous water column. This will affect gas exchange in these diverse aquatic systems, in addition to their unique microbiota and organic carbon lability that control the production and consumption rates of greenhouse gases. The stratification in IWT ponds generates hypoxic conditions at the bottom, and together with the larger availability of organic carbon, stimulates methanogenesis and limits the mitigating action of methanotrophs. Overall, thaw ponds are largely supersaturated in methane, with IWT ponds dominating the emissions in this landscape (92% of total aquatic emissions estimated for the same valley), and they present large variations in emission rates. Conventional wind-based models seem inappropriate to simulate GHG exchanges, as seen when comparing with floating chamber estimations. Surface renewal models that consider heat exchanges are used to estimate flux more accurately, and ebullition flux are measured with submerged funnels to compare with diffusive flux estimations.

VizieR Online Data Catalog: Collinder 261 Chandra sources & optical counterparts (Vats+, 2017)

NASA Astrophysics Data System (ADS)

Vats, S.; van den Berg, M.

2017-10-01

Cr 261 was observed with the Advanced CCD Imaging Spectrometer (ACIS) on board Chandra starting 2009 November 9 14:50 UTC, for a total exposure time of 53.8ks (ObsID 11308). We retrieved optical images of Cr 261 in the B and V bands from the ESO public archive. These data were taken as part of the ESO Imaging Survey (EIS; program ID 164.O-0561). The observations of Cr 261 were made using the Wide Field Imager (WFI), mounted on the 2.2m MPG/ESO telescope at La Silla, Chile. The Cr 261 data were taken from 2001 June 27 23:55 UTC to 2001 June 28 00:38 UTC, with a total exposure time of 510s in the B and V filter each. (2 data files).

Melting a Gold Sample within TEMPUS

NASA Technical Reports Server (NTRS)

2003-01-01

A gold sample is heated by the TEMPUS electromagnetic levitation furnace on STS-94, 1997, MET:10/09:20 (approximate). The sequence shows the sample being positioned electromagnetically and starting to be heated to melting. TEMPUS (stands for Tiegelfreies Elektromagnetisches Prozessiere unter Schwerelosigkeit (containerless electromagnetic processing under weightlessness). It was developed by the German Space Agency (DARA) for flight aboard Spacelab. The DARA project scientist was Igon Egry. The experiment was part of the space research investigations conducted during the Microgravity Science Laboratory-1R mission (STS-94, July 1-17 1997). DARA and NASA are exploring the possibility of flying an advanced version of TEMPUS on the International Space Station. (378KB JPEG, 2380 x 2676 pixels; downlinked video, higher quality not available) The MPG from which this composite was made is available at http://mix.msfc.nasa.gov/ABSTRACTS/MSFC-0300191.html.

VizieR Online Data Catalog: Supernova rates from STRESS (Botticella+, 2008)

NASA Astrophysics Data System (ADS)

Botticella, M. T.; Riello, M.; Cappellaro, E.; Benetti, S.; Altavilla, G.; Pastorello, A.; Turatto, M.; Greggio, L.; Patat, F.; Valenti, S.; Zampieri, L.; Harutyunyan, A.; Pignata, G.; Taubenberger, S.

2008-04-01

Observations were carried out using the Wide Field Imager (WFI) at the 2.2m MPG/ESO telescope at La Silla, Chile. WFI is a mosaic camera consisting of 2x4 CCDs, each of 2048x4096 pixels, with a pixel scale of 0.238arcsec and a field of view of 34x33arcmin2. The individual chips are separated by gaps of 23.8arcsec and 14.3arcsec along right ascension and declination respectively, for a resulting filling factor of 95.9%. We performed observations in the B,V,R,I bands using the following ESO/WFI broad-band filters: B/99, B/123, V/89, Rc/162, Ic/lwp. The observing programme was distributed over a period of 6 years, from 1999 to 2005. (3 data files).

Advanced hybrid vehicle propulsion system study

NASA Technical Reports Server (NTRS)

Schwarz, R.

1982-01-01

Results are presented of a study of an advanced heat engine/electric automotive hybrid propulsion system. The system uses a rotary stratified charge engine and ac motor/controller in a parallel hybrid configuration. The three tasks of the study were (1) parametric studies involving five different vehicle types, (2) design trade-off studies to determine the influence of various vehicle and propulsion system paramaters on system performance fuel economy and cost, and (3) a conceptual design establishing feasibility at the selected approach. Energy consumption for the selected system was .034 1/km (61.3 mpg) for the heat engine and .221 kWh/km (.356 kWh/mi) for the electric power system over a modified J227 a schedule D driving cycle. Life cycle costs were 7.13 cents/km (11.5 cents/mi) at $2/gal gasoline and 7 cents/kWh electricity for 160,000 km (100,000 mi) life.

snpAD: An ancient DNA genotype caller.

PubMed

Prüfer, Kay

2018-06-21

The study of ancient genomes can elucidate the evolutionary past. However, analyses are complicated by base-modifications in ancient DNA molecules that result in errors in DNA sequences. These errors are particularly common near the ends of sequences and pose a challenge for genotype calling. I describe an iterative method that estimates genotype frequencies and errors along sequences to allow for accurate genotype calling from ancient sequences. The implementation of this method, called snpAD, performs well on high-coverage ancient data, as shown by simulations and by subsampling the data of a high-coverage Neandertal genome. Although estimates for low-coverage genomes are less accurate, I am able to derive approximate estimates of heterozygosity from several low-coverage Neandertals. These estimates show that low heterozygosity, compared to modern humans, was common among Neandertals. The C ++ code of snpAD is freely available at http://bioinf.eva.mpg.de/snpAD/. Supplementary data are available at Bioinformatics online.

VizieR Online Data Catalog: Dwarf novae outbursts properties (Otulakowska-Hypka+, 2016)

NASA Astrophysics Data System (ADS)

Otulakowska-Hypka, M.; Olech, A.; Patterson, J.

2017-11-01

In this study, we used the following available catalogue data sources. The catalogue and atlas of CVs (https://archive.stsci.edu/prepds/cvcat/) by Downes et al. (2001PASP..113..764D, Cat. V/123) which contains 1830 objects that have been classified as a CV before 2006 February 1, when the catalogue was frozen. Catalogue of cataclysmic binaries, low-mass X-ray binaries and related objects (http://www.mpa-garching.mpg.de/RKcat/) by Ritter & Kolb (2003A&A...404..301R, Cat. B/cb). Although the reference corresponds to a catalogue which is over 10yr old, its newest edition 7.21 (2013 December 31) has been used in this study. This catalogue contains 1094 CVs. Catalogue of J. Patterson, that is the supplementary electronic material to the publication Patterson (2011) containing properties of 292 non-magnetic CVs with orbital periods smaller than 3h (http://cbastro.org/dwarfnovashort/) (1 data file).

Bubble and Drop Nonlinear Dynamics experiment

NASA Technical Reports Server (NTRS)

2003-01-01

The Bubble and Drop Nonlinear Dynamics (BDND) experiment was designed to improve understanding of how the shape and behavior of bubbles respond to ultrasound pressure. By understanding this behavior, it may be possible to counteract complications bubbles cause during materials processing on the ground. This 12-second sequence came from video downlinked from STS-94, July 5 1997, MET:3/19:15 (approximate). The BDND guest investigator was Gary Leal of the University of California, Santa Barbara. The experiment was part of the space research investigations conducted during the Microgravity Science Laboratory-1R mission (STS-94, July 1-17 1997). Advanced fluid dynamics experiments will be a part of investigations plarned for the International Space Station. (189KB JPEG, 1293 x 1460 pixels; downlinked video, higher quality not available) The MPG from which this composite was made is available at http://mix.msfc.nasa.gov/ABSTRACTS/MSFC-0300163.html.

Correlated Light-Matter Interactions in Cavity QED

NASA Astrophysics Data System (ADS)

Flick, Johannes; Pellegrini, Camilla; Ruggenthaler, Michael; Appel, Heiko; Tokatly, Ilya; Rubio, Angel

2015-03-01

In the last decade, time-dependent density functional theory (TDDFT) has been successfully applied to a large variety of problems, such as calculations of absorption spectra, excitation energies, or dynamics in strong laser fields. Recently, we have generalized TDDFT to also describe electron-photon systems (QED-TDDFT). Here, matter and light are treated on an equal quantized footing. In this work, we present the first numerical calculations in the framework of QED-TDDFT. We show exact solutions for fully quantized prototype systems consisting of atoms or molecules placed in optical high-Q cavities and coupled to quantized electromagnetic modes. We focus on the electron-photon exchange-correlation (xc) contribution by calculating exact Kohn-Sham potentials using fixed-point inversions and present the performance of the first approximated xc-potential based on an optimized effective potential (OEP) approach. Max Planck Institute for the Structure and Dynamics of Matter, Hamburg, and Fritz-Haber-Institut der MPG, Berlin

BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing

PubMed Central

Lutsik, Pavlo; Feuerbach, Lars; Arand, Julia; Lengauer, Thomas; Walter, Jörn; Bock, Christoph

2011-01-01

Bisulfite sequencing is a widely used method for measuring DNA methylation in eukaryotic genomes. The assay provides single-base pair resolution and, given sufficient sequencing depth, its quantitative accuracy is excellent. High-throughput sequencing of bisulfite-converted DNA can be applied either genome wide or targeted to a defined set of genomic loci (e.g. using locus-specific PCR primers or DNA capture probes). Here, we describe BiQ Analyzer HT (http://biq-analyzer-ht.bioinf.mpi-inf.mpg.de/), a user-friendly software tool that supports locus-specific analysis and visualization of high-throughput bisulfite sequencing data. The software facilitates the shift from time-consuming clonal bisulfite sequencing to the more quantitative and cost-efficient use of high-throughput sequencing for studying locus-specific DNA methylation patterns. In addition, it is useful for locus-specific visualization of genome-wide bisulfite sequencing data. PMID:21565797

CARMENES science preparation. High-resolution spectroscopy of M dwarfs

NASA Astrophysics Data System (ADS)

Montes, D.; Caballero, J. A.; Jeffers, S.; Alonso-Floriano, F. J.; Mundt, R.; CARMENES Consortium

2015-05-01

To ensure an efficient use of CARMENES observing time, and the highest chances of success, it is necessary first to select the most promising targets. To achieve this, we are observing 500 M dwarfs at high-resolution (R = 30,000-48,000), from which we determine the projected rotational velocity vsin{i} with an accuracy better than 0.5-0.2 km/s and radial-velocity stability better than 0.2-0.1 km/s. Our aim is to have at least two spectra at different epochs of the final 300 CARMENES targets. Our observations with FEROS at ESO/MPG 2.2 m La Silla, CAFE at 2.2 m Calar Alto and HRS at Hobby Eberly Telescope allow us to identify single- and double-line spectroscopic binaries and, especially, fast rotators, which should be discarded from the target list for exoplanet searches. Here we present preliminary results.

CARMENES at PPVI. High-Resolution Spectroscopy of M Dwarfs with FEROS, CAFE and HRS

NASA Astrophysics Data System (ADS)

Alonso-Floriano, F. J.; Montes, D.; Jeffers, S.; Caballero, J. A.; Zechmeister, M.; Mundt, R.; Reiners, A.; Amado, P. J.; Casal, E.; Cortés-Contreras, M.; Modroño, Z.; Ribas, I.; Rodríguez-López, C.; Quirrenbach, A.

2013-07-01

To ensure an efficient use of CARMENES observing time, and the highest chances of success, it is necessary first to select the most promising targets. To achieve this, we are observing ~500 M dwarfs at high-resolution (R = 30,000-48,000), from which we determine the projected rotational velocity vsini with an accuracy better than 0.5-0.2 km/s and radial-velocity stability better than 0.2-0.1 km/s. Our aim is to have at least two spectra at different epochs of the final 300 CARMENES targets. Our observations with FEROS at ESO/MPG 2.2m La Silla , CAFE at 2.2m Calar Alto and HRS at Hobby Eberly Telescope allow us to identify single- and double-line spectroscopic binaries and, especially, fast rotators, which should be discarded from the target list for exoplanet searches. Here we present preliminary results.

SBML-PET: a Systems Biology Markup Language-based parameter estimation tool.

PubMed

Zi, Zhike; Klipp, Edda

2006-11-01

The estimation of model parameters from experimental data remains a bottleneck for a major breakthrough in systems biology. We present a Systems Biology Markup Language (SBML) based Parameter Estimation Tool (SBML-PET). The tool is designed to enable parameter estimation for biological models including signaling pathways, gene regulation networks and metabolic pathways. SBML-PET supports import and export of the models in the SBML format. It can estimate the parameters by fitting a variety of experimental data from different experimental conditions. SBML-PET has a unique feature of supporting event definition in the SMBL model. SBML models can also be simulated in SBML-PET. Stochastic Ranking Evolution Strategy (SRES) is incorporated in SBML-PET for parameter estimation jobs. A classic ODE Solver called ODEPACK is used to solve the Ordinary Differential Equation (ODE) system. http://sysbio.molgen.mpg.de/SBML-PET/. The website also contains detailed documentation for SBML-PET.

MIPS: a database for protein sequences and complete genomes.

PubMed Central

Mewes, H W; Hani, J; Pfeiffer, F; Frishman, D

1998-01-01

The MIPS group [Munich Information Center for Protein Sequences of the German National Center for Environment and Health (GSF)] at the Max-Planck-Institute for Biochemistry, Martinsried near Munich, Germany, is involved in a number of data collection activities, including a comprehensive database of the yeast genome, a database reflecting the progress in sequencing the Arabidopsis thaliana genome, the systematic analysis of other small genomes and the collection of protein sequence data within the framework of the PIR-International Protein Sequence Database (described elsewhere in this volume). Through its WWW server (http://www.mips.biochem.mpg.de ) MIPS provides access to a variety of generic databases, including a database of protein families as well as automatically generated data by the systematic application of sequence analysis algorithms. The yeast genome sequence and its related information was also compiled on CD-ROM to provide dynamic interactive access to the 16 chromosomes of the first eukaryotic genome unraveled. PMID:9399795

Effects of DC bias on magnetic performance of high grades grain-oriented silicon steels

NASA Astrophysics Data System (ADS)

Ma, Guang; Cheng, Ling; Lu, Licheng; Yang, Fuyao; Chen, Xin; Zhu, Chengzhi

2017-03-01

When high voltage direct current (HVDC) transmission adopting mono-polar ground return operation mode or unbalanced bipolar operation mode, the invasion of DC current into neutral point of alternating current (AC) transformer will cause core saturation, temperature increasing, and vibration acceleration. Based on the MPG-200D soft magnetic measurement system, the influence of DC bias on magnetic performance of 0.23 mm and 0.27 mm series (P1.7=0.70-1.05 W/kg, B8>1.89 T) grain-oriented (GO) silicon steels under condition of AC / DC hybrid excitation were systematically realized in this paper. For the high magnetic induction GO steels (core losses are the same), greater thickness can lead to stronger ability of resisting DC bias, and the reasons for it were analyzed. Finally, the magnetostriction and A-weighted magnetostriction velocity level of GO steel under DC biased magnetization were researched.

Potential benefits of solar reflective car shells: cooler cabins, fuel savings and emission reductions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Levinson, Ronnen; Pan, Heng; Ban-Weiss, George

Abstract: Vehicle thermal loads and air conditioning ancillary loads are strongly influenced by the absorption of solar energy. The adoption of solar reflective coatings for opaque surfaces of the vehicle shell can decrease the ?soak? temperature of the air in the cabin of a vehicle parked in the sun, potentially reducing the vehicle?s ancillary load and improving its fuel economy by permitting the use of a smaller air conditioner. An experimental comparison of otherwise identical black and silver compact sedans indicated that increasing the solar reflectance (?) of the car?s shell by about 0.5 lowered the soak temperature of breath-levelmore » air by about 5?6?C. Thermal analysis predicts that the air conditioning capacity required to cool the cabin air in the silver car to 25?C within 30min is 13percent less than that required in the black car. Assuming that potential reductions in AC capacity and engine ancillary load scale linearly with increase in shell solar reflectance, ADVISOR simulations of the SC03 driving cycle indicate that substituting a typical cool-colored shell (?=0.35) for a black shell (?=0.05) would reduce fuel consumption by 0.12L per 100km (1.1percent), increasing fuel economy by 0.10kmL?1 [0.24mpg] (1.1percent). It would also decrease carbon dioxide (CO2) emissions by 2.7gkm?1 (1.1percent), nitrogen oxide (NOx) emissions by 5.4mgkm?1 (0.44percent), carbon monoxide (CO) emissions by 17mgkm?1 (0.43percent), and hydrocarbon (HC) emissions by 4.1mgkm?1 (0.37percent). Selecting a typical white or silver shell (?=0.60) instead of a black shell would lower fuel consumption by 0.21L per 100km (1.9percent), raising fuel economy by 0.19kmL?1 [0.44mpg] (2.0percent). It would also decrease CO2 emissions by 4.9gkm?1 (1.9percent), NOx emissions by 9.9mgkm?1 (0.80percent), CO emissions by 31mgkm?1 (0.79percent), and HC emissions by 7.4mgkm?1 (0.67percent). Our simulations may underestimate emission reductions because emissions in standardized driving cycles are typically lower than those in real-world driving.« less

Alignment-free detection of horizontal gene transfer between closely related bacterial genomes.

PubMed

Domazet-Lošo, Mirjana; Haubold, Bernhard

2011-09-01

Bacterial epidemics are often caused by strains that have acquired their increased virulence through horizontal gene transfer. Due to this association with disease, the detection of horizontal gene transfer continues to receive attention from microbiologists and bioinformaticians alike. Most software for detecting transfer events is based on alignments of sets of genes or of entire genomes. But despite great advances in the design of algorithms and computer programs, genome alignment remains computationally challenging. We have therefore developed an alignment-free algorithm for rapidly detecting horizontal gene transfer between closely related bacterial genomes. Our implementation of this algorithm is called alfy for "ALignment Free local homologY" and is freely available from http://guanine.evolbio.mpg.de/alfy/. In this comment we demonstrate the application of alfy to the genomes of Staphylococcus aureus. We also argue that-contrary to popular belief and in spite of increasing computer speed-algorithmic optimization is becoming more, not less, important if genome data continues to accumulate at the present rate.

pmx Webserver: A User Friendly Interface for Alchemistry.

PubMed

Gapsys, Vytautas; de Groot, Bert L

2017-02-27

With the increase of available computational power and improvements in simulation algorithms, alchemical molecular dynamics based free energy calculations have developed into routine usage. To further facilitate the usability of alchemical methods for amino acid mutations, we have developed a web based infrastructure for obtaining hybrid protein structures and topologies. The presented webserver allows amino acid mutation selection in five contemporary molecular mechanics force fields. In addition, a complete mutation scan with a user defined amino acid is supported. The output generated by the webserver is directly compatible with the Gromacs molecular dynamics engine and can be used with any of the alchemical free energy calculation setup. Furthermore, we present a database of input files and precalculated free energy differences for tripeptides approximating a disordered state of a protein, of particular use for protein stability studies. Finally, the usage of the webserver and its output is exemplified by performing an alanine scan and investigating thermodynamic stability of the Trp cage mini protein. The webserver is accessible at http://pmx.mpibpc.mpg.de.

METscout: a pathfinder exploring the landscape of metabolites, enzymes and transporters.

PubMed

Geffers, Lars; Tetzlaff, Benjamin; Cui, Xiao; Yan, Jun; Eichele, Gregor

2013-01-01

METscout (http://metscout.mpg.de) brings together metabolism and gene expression landscapes. It is a MySQL relational database linking biochemical pathway information with 3D patterns of gene expression determined by robotic in situ hybridization in the E14.5 mouse embryo. The sites of expression of ∼1500 metabolic enzymes and of ∼350 solute carriers (SLCs) were included and are accessible as single cell resolution images and in the form of semi-quantitative image abstractions. METscout provides several graphical web-interfaces allowing navigation through complex anatomical and metabolic information. Specifically, the database shows where in the organism each of the many metabolic reactions take place and where SLCs transport metabolites. To link enzymatic reactions and transport, the KEGG metabolic reaction network was extended to include metabolite transport. This network in conjunction with spatial expression pattern of the network genes allows for a tracing of metabolic reactions and transport processes across the entire body of the embryo.

FunSimMat: a comprehensive functional similarity database

PubMed Central

Schlicker, Andreas; Albrecht, Mario

2008-01-01

Functional similarity based on Gene Ontology (GO) annotation is used in diverse applications like gene clustering, gene expression data analysis, protein interaction prediction and evaluation. However, there exists no comprehensive resource of functional similarity values although such a database would facilitate the use of functional similarity measures in different applications. Here, we describe FunSimMat (Functional Similarity Matrix, http://funsimmat.bioinf.mpi-inf.mpg.de/), a large new database that provides several different semantic similarity measures for GO terms. It offers various precomputed functional similarity values for proteins contained in UniProtKB and for protein families in Pfam and SMART. The web interface allows users to efficiently perform both semantic similarity searches with GO terms and functional similarity searches with proteins or protein families. All results can be downloaded in tab-delimited files for use with other tools. An additional XML–RPC interface gives automatic online access to FunSimMat for programs and remote services. PMID:17932054

Photometric Redshifts of High-z BL Lacs from 3FGL Catalog

NASA Astrophysics Data System (ADS)

Kaur, A.; Rau, Arne; Ajello, Marco; Paliya, Vaidehi; Hartmann, Dieter; Greiner, Jochen; Bolmer, Jan; Schady, Patricia

2017-08-01

Determining redshifts for BL Lacertae (BL Lac) objects using the traditional spectroscopic method is challenging due to the absence of strong emission lines in their optical spectra. We employ the photometric dropout technique to determine redshifts for this class of blazars using the combined 13 broad-band filters from Swift-UVOT and the multi-channel imager GROND at the MPG 2.2 m telescope at ESO's La Silla Observatory. The wavelength range covered by these 13 filters extends from far ultraviolet to the near-Infrared. We report results on 40 new Fermi detected BL Lacs with the photometric redshifts determinations for 5 sources, with 3FGL J1918.2-4110 being the most distance in our sample at z=2.16. Reliable upper limits are provided for 20 sources in this sample. Using the highest energy photons for these Fermi-LAT sources, we evaluate the consistency with the Gamma-ray horizon due to the extragalactic background light.

The circumstellar environments of B[e] Supergiants

NASA Astrophysics Data System (ADS)

Maravelias, G.; Kraus, M.; Cidale, L.; Arias, M. L.; Aret, A.; Borges Fernandes, M.

2017-11-01

The evolution of massive stars encompasses short-lived transition phases in which mass-loss is more enhanced and usually eruptive. A complex environment, combining atomic, molecular and dust regions, is formed around these stars. In particular, the circumstellar environment of B[e] Supergiants is not well understood. To address that, we have initiated a campaign to investigate their environments for a sample of Galactic and Magellanic Cloud sources. Using high-resolution optical and near-infrared spectra (MPG-ESO/FEROS, GEMINI/Phoenix and VLT/CRIRES, respectively), we examine a set of emission features ([OI], [CaII], CO bandheads) to trace the physical conditions and kinematics in their formation regions. We find that the B[e] Supergiants are surrounded by a series of rings of different temperatures and densities, a probable result of previous mass-loss events. In many cases the CO forms very close to the star, while we notice also an alternate mixing of densities and temperatures (which give rise to the different emission features) along the equatorial plane.

Trans-cis molecular photoswitching in interstellar space

NASA Astrophysics Data System (ADS)

Cuadrado, S.; Goicoechea, J. R.; Roncero, O.; Aguado, A.; Tercero, B.; Cernicharo, J.

2016-11-01

As many organic molecules, formic acid (HCOOH) has two conformers (trans and cis). The energy barrier to internal conversion from trans to cis is much higher than the thermal energy available in molecular clouds. Thus, only the most stable conformer (trans) is expected to exist in detectable amounts. We report the first interstellar detection of cis-HCOOH. Its presence in ultraviolet (UV) irradiated gas exclusively (the Orion Bar photodissociation region), with a low trans-to-cis abundance ratio of 2.8 ± 1.0, supports a photoswitching mechanism: a given conformer absorbs a stellar photon that radiatively excites the molecule to electronic states above the interconversion barrier. Subsequent fluorescent decay leaves the molecule in a different conformer form. This mechanism, which we specifically study with ab initio quantum calculations, was not considered in Space before but likely induces structural changes of a variety of interstellar molecules submitted to UV radiation. This paper makes use of observations obtained with the IRAM-30 m telescope. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain).

The BaMM web server for de-novo motif discovery and regulatory sequence analysis.

PubMed

Kiesel, Anja; Roth, Christian; Ge, Wanwan; Wess, Maximilian; Meier, Markus; Söding, Johannes

2018-05-28

The BaMM web server offers four tools: (i) de-novo discovery of enriched motifs in a set of nucleotide sequences, (ii) scanning a set of nucleotide sequences with motifs to find motif occurrences, (iii) searching with an input motif for similar motifs in our BaMM database with motifs for >1000 transcription factors, trained from the GTRD ChIP-seq database and (iv) browsing and keyword searching the motif database. In contrast to most other servers, we represent sequence motifs not by position weight matrices (PWMs) but by Bayesian Markov Models (BaMMs) of order 4, which we showed previously to perform substantially better in ROC analyses than PWMs or first order models. To address the inadequacy of P- and E-values as measures of motif quality, we introduce the AvRec score, the average recall over the TP-to-FP ratio between 1 and 100. The BaMM server is freely accessible without registration at https://bammmotif.mpibpc.mpg.de.

Flame Balls

NASA Technical Reports Server (NTRS)

2003-01-01

The Structure of Flameballs at Low Lewis Numbers (SOFBALL) experiments aboard the space shuttle in 1997 a series of sturningly successful burns. This sequence was taken during STS-94, July 12, 1997, MET:10/08:18 (approximate). It was thought these extremely dim flameballs (1/20 the power of a kitchen match) could last up to 200 seconds -- in fact, they can last for at least 500 seconds. This has ramifications in fuel-spray design in combustion engines, as well as fire safety in space. The SOFBALL principal investigator was Paul Ronney, University of Southern California, Los Angeles. The experiment was part of the space research investigations conducted during the Microgravity Science Laboratory-1R mission (STS-94, July 1-17 1997). Advanced combustion experiments will be a part of investigations planned for the International Space Station. (563KB JPEG, 1798 x 1350 pixels; downlinked video, higher quality not available) The MPG from which this composite was made is available at http://mix.msfc.nasa.gov/ABSTRACTS/MSFC-0300187.html.

Development of a Targeted anti-HER2 scFv Chimeric Peptide for Gene Delivery into HER2-Positive Breast Cancer Cells.

PubMed

Cheraghi, Roya; Nazari, Mahboobeh; Alipour, Mohsen; Majidi, Asia; Hosseinkhani, Saman

2016-12-30

Chimeric polymers are known as suitable carriers for gene delivery. Certain properties are critical for a polymer to be used as a gene delivery vector. A new polymer was designed for the targeted delivery of genes into breast cancer cell lines, based on MPG peptide. It is composed of different functional domains, including HIV gp41, nuclear localization sequence of SV40 T-antigen, two C-terminus repeats of histone H1, and the scFv of anti-HER2 antibody. The results demonstrated that the vector can effectively condense plasmid DNA into nanoparticles with an average size of 250nm. Moreover, fusion of the scFv portion to the carrier brought about the specific recognition of HER2. Overall, the transfection efficiency of the vector demonstrated that it could deliver the desired gene into BT-474 HER2-positive breast cancer cells. Copyright © 2016 Elsevier B.V. All rights reserved.

CARMENES: management of a schedule-driven project

NASA Astrophysics Data System (ADS)

García-Vargas, M. L.; Caballero, J.; Pérez-Calpena, A.; Amado, Pedro; Seifert, Walter; Azzaro, Marco; Mandel, Holger; Quirrenbach, Andreas; Ribas, Ignasi; Reiners, Ansgar; Guenther, Eike; Gesa, Lluís.; Galadí, David; Aceituno, Jesús

2016-08-01

CARMENES (Calar Alto high-Resolution search for M dwarfs with Exoearths with Near-infrared and optical Échelle Spectrographs) is an instrument consistent in two ultra-stable high resolution (R 82,000) spectrographs covering simultaneously the visible (0.5 - 1.0μm) and near-IR (1.0 - 1.7μm) ranges to provide high-accuracy radial-velocity measurements (˜1 m/s) thanks to the long-term stability. CARMENES was the initiative of a consortium of eleven German and Spanish institutions. CARMENES has been built for the 3.5m telescope at the Centro Astronómico Hipano- Alemán (CAHA), Calar Alto Observatory (Almería, Spain) and is currently in operation. CAHA is jointly operated by the Max-Planck-Society (MPG) and the Spanish National Research Council (CSIC). The project received the green light in October 2010 and in February 2013 passed a Final Design Review. Six months later, the MPG and CSIC, the observatory's owners, made an independent evaluation concluding that CARMENES had to be ready for operations at the end of 2015. Since then, fulfilling the calendar was the driver of all project decisions. Moreover, the observatory's survival was linked to the instrument's success: should the instrument fail, the observatory would be closed. On the contrary, the instrument's success would give unique capabilities to the Observatory for Big Science. Such a challenge became to be our private Olympic Games: we had to be on time. This decision definitively impacted on the project dynamics, there was no room for a delay. The deadline, December 31st, 2015, was controlled by a strict tracking of the critical path; calendar deviations were corrected with risky decisions while fast tracking or even crashing methods were applied. The management scenario was far from optimum: most key people in the project shared their time with other duties; the observatory funding cuts; the budget was tight and distributed among the 11 partner centers with their own different rules, etc. Despite these difficulties, the close coordination among the project manager, the system engineer and the work package managers, the hard work of the whole team, and the support from the observatory were our best bets. Two frenetic years after the calendar decision, we had manufactured, integrated and tested the two spectrographs and we were commissioning the instrument. The instrument first light took place on November, 9th, 2015 and CARMENES entered in operation at the end of December 2015. This paper describes the keys to success.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Warren, Dan

The US Congress funded the Puget Sound and Coastal Washington Hatchery Reform Project via annual appropriations to the US Fish and Wildlife Service (USFWS) beginning in fiscal year 2000. Congress established the project because it recognized that while hatcheries have a necessary role to play in meeting harvest and conservation goals for Pacific Northwest salmonids, the hatchery system was in need of comprehensive reform. Most hatcheries were producing fish for harvest primarily to mitigate for past habitat loss (rather than for conservation of at-risk populations) and were not taking into account the effects of their programs on naturally spawning populations.more » With numerous species listed as threatened or endangered under the Endangered Species Act (ESA), conservation of salmon in the Puget Sound area was a high priority. Genetic resources in the region were at risk and many hatchery programs as currently operated were contributing to those risks. Central to the project was the creation of a nine-member independent scientific review panel called the Hatchery Scientific Review Group (HSRG). The HSRG was charged by Congress with reviewing all state, tribal and federal hatchery programs in Puget Sound and Coastal Washington as part of a comprehensive hatchery reform effort to: conserve indigenous salmonid genetic resources; assist with the recovery of naturally spawning salmonid populations; provide sustainable fisheries; and improve the quality and cost-effectiveness of hatchery programs. The HSRG worked closely with the state, tribal and federal managers of the hatchery system, with facilitation provided by the non-profit organization Long Live the Kings and the law firm Gordon, Thomas, Honeywell, to successfully complete reviews of over 200 hatchery programs at more than 100 hatcheries across western Washington. That phase of the project culminated in 2004 with the publication of reports containing the HSRG's principles for hatchery reform and recommendations for Puget Sound/Coastal Washington hatchery programs, followed by the development in 2005 of a suite of analytical tools to support application of the principles (all reports and tools are available at www.hatcheryreform.us). In 2005, Congress directed the National Oceanic and Atmospheric Administration-Fisheries (NOAA Fisheries) to replicate the Puget Sound and Coastal Washington Hatchery Reform Project in the Columbia River Basin. The HSRG was expanded to 14 members to include individuals with specific knowledge about the Columbia River salmon and steelhead populations. This second phase was initially envisioned as a one-year review, with emphasis on the Lower Columbia River hatchery programs. It became clear however, that the Columbia River Basin needed to be viewed as an inter-connected ecosystem in order for the review to be useful. The project scope was subsequently expanded to include the entire Basin, with funding for a second year provided by the Bonneville Power Administration (BPA) under the auspices of the Northwest Power and Conservation Council's (NPCC) Fish and Wildlife Program. The objective of the HSRG's Columbia River Basin review was to change the focus of the Columbia River hatchery system. In the past, these hatchery programs have been aimed at supplying adequate numbers of fish for harvest as mitigation primarily for hydropower development in the Basin. A new, ecosystem-based approach is founded on the idea that harvest goals are sustainable only if they are compatible with conservation goals. The challenge before the HSRG was to determine whether or not conservation and harvest goals could be met by fishery managers and, if so, how. The HSRG determined that in order to address these twin goals, both hatchery and harvest reforms are necessary. The HSRG approach represents an important change of direction in managing hatcheries in the region. It provides a clear demonstration that current hatchery programs can indeed be redirected to better meet both conservation and harvest goals. For each Columbia River Basin Environmentally Significant Unit (ESU), Distinct Population Segment (MPG) or Major Population Group (MPG) reviewed, the HSRG presents its findings and recommendations in the form of an HSRG solution. This package of recommended changes to current hatchery and harvest program design and operation is intended to demonstrate how the programs could be managed to significantly increase the likelihood of meeting the managers goals for both harvest and conservation of the ESU/DPS/MPG. The 'HSRG solution' also highlights the biological principles that the HSRG believes must form the foundation for successful use of hatcheries and fisheries as management tools.« less

In silico carbon molecular beam epitaxial growth of graphene on the h-BN substrate: carbon source effect on van der Waals epitaxy

NASA Astrophysics Data System (ADS)

Lee, Jonghoon; Varshney, Vikas; Park, Jeongho; Farmer, Barry L.; Roy, Ajit K.

2016-05-01

Against the presumption that hexagonal boron-nitride (h-BN) should provide an ideal substrate for van der Waals (vdW) epitaxy to grow high quality graphene films, carbon molecular beam epitaxy (CMBE) techniques using solid carbon sublimation have reported relatively poor quality of the graphene. In this article, the CMBE growth of graphene on the h-BN substrate is numerically studied in order to identify the effect of the carbon source on the quality of the graphene film. The carbon molecular beam generated by the sublimation of solid carbon source materials such as graphite and glassy carbon is mostly composed of atomic carbon, carbon dimers and carbon trimers. Therefore, the graphene film growth becomes a complex process involving various deposition characteristics of a multitude of carbon entities. Based on the study of surface adsorption and film growth characteristics of these three major carbon entities comprising graphite vapour, we report that carbon trimers convey strong traits of vdW epitaxy prone to high quality graphene growth, while atomic carbon deposition is a surface-reaction limited process accompanied by strong chemisorption. The vdW epitaxial behaviour of carbon trimers is found to be substantial enough to nucleate and develop into graphene like planar films within a nanosecond of high flux growth simulation, while reactive atomic carbons tend to impair the structural integrity of the crystalline h-BN substrate upon deposition to form an amorphous interface between the substrate and the growing carbon film. The content of reactive atomic carbons in the molecular beam is suspected to be the primary cause of low quality graphene reported in the literature. A possible optimization of the molecular beam composition towards the synthesis of better quality graphene films is suggested.Against the presumption that hexagonal boron-nitride (h-BN) should provide an ideal substrate for van der Waals (vdW) epitaxy to grow high quality graphene films, carbon molecular beam epitaxy (CMBE) techniques using solid carbon sublimation have reported relatively poor quality of the graphene. In this article, the CMBE growth of graphene on the h-BN substrate is numerically studied in order to identify the effect of the carbon source on the quality of the graphene film. The carbon molecular beam generated by the sublimation of solid carbon source materials such as graphite and glassy carbon is mostly composed of atomic carbon, carbon dimers and carbon trimers. Therefore, the graphene film growth becomes a complex process involving various deposition characteristics of a multitude of carbon entities. Based on the study of surface adsorption and film growth characteristics of these three major carbon entities comprising graphite vapour, we report that carbon trimers convey strong traits of vdW epitaxy prone to high quality graphene growth, while atomic carbon deposition is a surface-reaction limited process accompanied by strong chemisorption. The vdW epitaxial behaviour of carbon trimers is found to be substantial enough to nucleate and develop into graphene like planar films within a nanosecond of high flux growth simulation, while reactive atomic carbons tend to impair the structural integrity of the crystalline h-BN substrate upon deposition to form an amorphous interface between the substrate and the growing carbon film. The content of reactive atomic carbons in the molecular beam is suspected to be the primary cause of low quality graphene reported in the literature. A possible optimization of the molecular beam composition towards the synthesis of better quality graphene films is suggested. Electronic supplementary information (ESI) available: Three movie files: 3mer-physorption.mpg and 3mer-chemisorption.mpg feature examples of the adsorption state sampling of a carbon trimer on the heated h-BN substrate as mentioned in the ``Single Molecule Adsorption Study'' section. In 3mer-film-growth.mpg, an instance of honey comb formation during the initial phase of graphene growth simulation using a carbon trimer beam is captured. An initially sp hybridized carbon atom (red colored) becomes sp2 hybridized as a result of additional covalent bonding with the impinging carbon trimer. As the bond angle around the red carbon changes from 180 degree (sp) to 120 degree (sp2), nearby carbon atoms enclose to form a hexagon structure composed of 6 carbon atoms. See DOI: 10.1039/c6nr01396a

Deoxyinosine triphosphate induces MLH1/PMS2- and p53-dependent cell growth arrest and DNA instability in mammalian cells

PubMed Central

Yoneshima, Yasuto; Abolhassani, Nona; Iyama, Teruaki; Sakumi, Kunihiko; Shiomi, Naoko; Mori, Masahiko; Shiomi, Tadahiro; Noda, Tetsuo; Tsuchimoto, Daisuke; Nakabeppu, Yusaku

2016-01-01

Deoxyinosine (dI) occurs in DNA either by oxidative deamination of a previously incorporated deoxyadenosine residue or by misincorporation of deoxyinosine triphosphate (dITP) from the nucleotide pool during replication. To exclude dITP from the pool, mammals possess specific hydrolysing enzymes, such as inosine triphosphatase (ITPA). Previous studies have shown that deficiency in ITPA results in cell growth suppression and DNA instability. To explore the mechanisms of these phenotypes, we analysed ITPA-deficient human and mouse cells. We found that both growth suppression and accumulation of single-strand breaks in nuclear DNA of ITPA-deficient cells depended on MLH1/PMS2. The cell growth suppression of ITPA-deficient cells also depended on p53, but not on MPG, ENDOV or MSH2. ITPA deficiency significantly increased the levels of p53 protein and p21 mRNA/protein, a well-known target of p53, in an MLH1-dependent manner. Furthermore, MLH1 may also contribute to cell growth arrest by increasing the basal level of p53 activity. PMID:27618981

deepTools2: a next generation web server for deep-sequencing data analysis.

PubMed

Ramírez, Fidel; Ryan, Devon P; Grüning, Björn; Bhardwaj, Vivek; Kilpert, Fabian; Richter, Andreas S; Heyne, Steffen; Dündar, Friederike; Manke, Thomas

2016-07-08

We present an update to our Galaxy-based web server for processing and visualizing deeply sequenced data. Its core tool set, deepTools, allows users to perform complete bioinformatic workflows ranging from quality controls and normalizations of aligned reads to integrative analyses, including clustering and visualization approaches. Since we first described our deepTools Galaxy server in 2014, we have implemented new solutions for many requests from the community and our users. Here, we introduce significant enhancements and new tools to further improve data visualization and interpretation. deepTools continue to be open to all users and freely available as a web service at deeptools.ie-freiburg.mpg.de The new deepTools2 suite can be easily deployed within any Galaxy framework via the toolshed repository, and we also provide source code for command line usage under Linux and Mac OS X. A public and documented API for access to deepTools functionality is also available. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

deepTools: a flexible platform for exploring deep-sequencing data.

PubMed

Ramírez, Fidel; Dündar, Friederike; Diehl, Sarah; Grüning, Björn A; Manke, Thomas

2014-07-01

We present a Galaxy based web server for processing and visualizing deeply sequenced data. The web server's core functionality consists of a suite of newly developed tools, called deepTools, that enable users with little bioinformatic background to explore the results of their sequencing experiments in a standardized setting. Users can upload pre-processed files with continuous data in standard formats and generate heatmaps and summary plots in a straight-forward, yet highly customizable manner. In addition, we offer several tools for the analysis of files containing aligned reads and enable efficient and reproducible generation of normalized coverage files. As a modular and open-source platform, deepTools can easily be expanded and customized to future demands and developments. The deepTools webserver is freely available at http://deeptools.ie-freiburg.mpg.de and is accompanied by extensive documentation and tutorials aimed at conveying the principles of deep-sequencing data analysis. The web server can be used without registration. deepTools can be installed locally either stand-alone or as part of Galaxy. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

KIRMES: kernel-based identification of regulatory modules in euchromatic sequences.

PubMed

Schultheiss, Sebastian J; Busch, Wolfgang; Lohmann, Jan U; Kohlbacher, Oliver; Rätsch, Gunnar

2009-08-15

Understanding transcriptional regulation is one of the main challenges in computational biology. An important problem is the identification of transcription factor (TF) binding sites in promoter regions of potential TF target genes. It is typically approached by position weight matrix-based motif identification algorithms using Gibbs sampling, or heuristics to extend seed oligos. Such algorithms succeed in identifying single, relatively well-conserved binding sites, but tend to fail when it comes to the identification of combinations of several degenerate binding sites, as those often found in cis-regulatory modules. We propose a new algorithm that combines the benefits of existing motif finding with the ones of support vector machines (SVMs) to find degenerate motifs in order to improve the modeling of regulatory modules. In experiments on microarray data from Arabidopsis thaliana, we were able to show that the newly developed strategy significantly improves the recognition of TF targets. The python source code (open source-licensed under GPL), the data for the experiments and a Galaxy-based web service are available at http://www.fml.mpg.de/raetsch/suppl/kirmes/.

Spatial-temporal diagnostics of the system of a plasma stream interacting with a surface of heat resistant material

NASA Astrophysics Data System (ADS)

Chinnov, V. F.; Sargsyan, M. A.; Gadzhiev, M. Kh; Khromov, M. A.; Kavyrshin, D. I.; Chistolinov, A. V.

2018-01-01

In an automated measuring complex using optical and spectral methods the spatial and temporal changes in the parameters and composition of nitrogen plasma jet were investigated. The plasma jet was flowing out of the nozzle of the plasma torch with 10-12 kK temperature and acting on the sample of MPG-6 graphite. Due to the heating of the sample to the temperatures of 2.5-3 kK the influence of the sublimating material of the sample on the plasma composition and temperature in the near-surface region of the sample was investigated. An original method based on the analysis of movement of optical inhomogeneities in the plasma flow was used to estimate the plasma jet velocity in the region where it interacts with the sample. The combined analysis of the results of two-positioning video recordings opens up the possibility of determining spatial-temporal distributions of the plasma jet velocities, in medium and high pressure environments, in the ranges from few to thousands of m/s and 3-15 kK temperatures.

Droplet Combustion Experiment Operates

NASA Technical Reports Server (NTRS)

2003-01-01

Fuel ignites and burns in the Droplet Combustion Experiment (DCE) on STS-94 on July 12, 1997, MET:11/07:00 (approximate). DCE used various fuels -- in drops ranging from 1 mm (0.04 inches) to 5 mm (0.2 inches) -- and mixtures of oxidizers and inert gases to learn more about the physics of combustion in the simplest burning configuration, a sphere. The DCE was designed to investigate the fundamental combustion aspects of single, isolated droplets under different pressures and ambient oxygen concentrations for a range of droplet sizes varying between 2 and 5 mm. The experiment elapsed time is shown at the bottom of the composite image. The DCE principal investigator was Forman Williams, University of California, San Diego. The experiment was part of the space research investigations conducted during the Microgravity Science Laboratory-1R mission (STS-94, July 1-17 1997). Advanced combustion experiments will be a part of investigations plarned for the International Space Station. (119KB JPEG, 658 x 982 pixels; downlinked video, higher quality not available) The MPG from which this composite was made is available at http://mix.msfc.nasa.gov/ABSTRACTS/MSFC-0300171.html.

Burning Fuel Droplet

NASA Technical Reports Server (NTRS)

2003-01-01

Fuel ignites and burns in the Droplet Combustion Experiment (DCE) on STS-94 on July 4 1997, MET:2/05:40 (approximate). The DCE was designed to investigate the fundamental combustion aspects of single, isolated droplets under different pressures and ambient oxygen concentrations for a range of droplet sizes varying between 2 and 5 mm. DCE used various fuels -- in drops ranging from 1 mm (0.04 inches) to 5 mm (0.2 inches) -- and mixtures of oxidizers and inert gases to learn more about the physics of combustion in the simplest burning configuration, a sphere. The experiment elapsed time is shown at the bottom of the composite image. The DCE principal investigator was Forman Williams, University of California, San Diego. The experiment was part of the space research investigations conducted during the Microgravity Science Laboratory-1R mission (STS-94, July 1-17 1997). Advanced combustion experiments will be a part of investigations plarned for the International Space Station. (121KB JPEG, 654 x 977 pixels; downlinked video, higher quality not available) The MPG from which this composite was made is available at http://mix.msfc.nasa.gov/ABSTRACTS/MSFC-0300169.html.

Hydrogen-fueled postal vehicle performance evaluation

NASA Technical Reports Server (NTRS)

Hall, R. A.

1979-01-01

Fuel consumption, range, and emissions data were obtained while operating a hydrogen-fueled postal delivery vehicle over a defined Postal Service Driving Cycle and the 1975 Urban Driving Cycle. The vehicle's fuel consumption was 0.366 pounds of hydrogen per mile over the postal driving cycle and 0.22 pounds of hydrogen per mile over the urban driving cycle. These data correspond to 6.2 and 10.6 mpg equivalent gasoline mileage for the two driving cycles, respectively. The vehicle's range was 24.2 miles while being operated on the postal driving cycle. Vehicle emissions were measured over the urban driving cycle. HC and CO emissions were quite low, as would be expected. The oxides of nitrogen were found to be 4.86 gm/mi, a value which is well above the current Federal and California standards. Vehicle limitations discussed include excessive engine flashbacks, inadequate acceleration capability the engine air/fuel ratio, the water injection systems, and the cab temperature. Other concerns are safety considerations, iron-titanium hydride observed in the fuel system, evidence of water in the engine rocker cover, and the vehicle maintenance required during the evaluation.

Magnetic plethysmograph transducers for local blood pulse wave velocity measurement.

PubMed

Nabeel, P M; Joseph, Jayaraj; Sivaprakasam, Mohanasankar

2014-01-01

We present the design of magnetic plethysmograph (MPG) transducers for detection of blood pulse waveform and evaluation of local pulse wave velocity (PWV), for potential use in cuffless blood pressure (BP) monitoring. The sensors utilize a Hall effect magnetic field sensor to capture the blood pulse waveform. A strap based design is performed to enable reliable capture of large number of cardiac cycles with relative ease. The ability of the transducer to consistently detect the blood pulse is verified by in-vivo trials on few volunteers. A duality of such transducers is utilized to capture the local PWV at the carotid artery. The pulse transit time (PTT) between the two detected pulse waveforms, measured along a small section of the carotid artery, was evaluated using automated algorithms to ensure consistency of measurements. The correlation between the measured values of local PWV and BP was also investigated. The developed transducers provide a reliable, easy modality for detecting pulse waveform on superficial arteries. Such transducers, used for measurement of local PWV, could potentially be utilized for cuffless, continuous evaluation of BP at various superficial arterial sites.

PHOXTRACK-a tool for interpreting comprehensive datasets of post-translational modifications of proteins.

PubMed

Weidner, Christopher; Fischer, Cornelius; Sauer, Sascha

2014-12-01

We introduce PHOXTRACK (PHOsphosite-X-TRacing Analysis of Causal Kinases), a user-friendly freely available software tool for analyzing large datasets of post-translational modifications of proteins, such as phosphorylation, which are commonly gained by mass spectrometry detection. In contrast to other currently applied data analysis approaches, PHOXTRACK uses full sets of quantitative proteomics data and applies non-parametric statistics to calculate whether defined kinase-specific sets of phosphosite sequences indicate statistically significant concordant differences between various biological conditions. PHOXTRACK is an efficient tool for extracting post-translational information of comprehensive proteomics datasets to decipher key regulatory proteins and to infer biologically relevant molecular pathways. PHOXTRACK will be maintained over the next years and is freely available as an online tool for non-commercial use at http://phoxtrack.molgen.mpg.de. Users will also find a tutorial at this Web site and can additionally give feedback at https://groups.google.com/d/forum/phoxtrack-discuss. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Comparing the performance of biomedical clustering methods.

PubMed

Wiwie, Christian; Baumbach, Jan; Röttger, Richard

2015-11-01

Identifying groups of similar objects is a popular first step in biomedical data analysis, but it is error-prone and impossible to perform manually. Many computational methods have been developed to tackle this problem. Here we assessed 13 well-known methods using 24 data sets ranging from gene expression to protein domains. Performance was judged on the basis of 13 common cluster validity indices. We developed a clustering analysis platform, ClustEval (http://clusteval.mpi-inf.mpg.de), to promote streamlined evaluation, comparison and reproducibility of clustering results in the future. This allowed us to objectively evaluate the performance of all tools on all data sets with up to 1,000 different parameter sets each, resulting in a total of more than 4 million calculated cluster validity indices. We observed that there was no universal best performer, but on the basis of this wide-ranging comparison we were able to develop a short guideline for biomedical clustering tasks. ClustEval allows biomedical researchers to pick the appropriate tool for their data type and allows method developers to compare their tool to the state of the art.

A top-level ontology of functions and its application in the Open Biomedical Ontologies.

PubMed

Burek, Patryk; Hoehndorf, Robert; Loebe, Frank; Visagie, Johann; Herre, Heinrich; Kelso, Janet

2006-07-15

A clear understanding of functions in biology is a key component in accurate modelling of molecular, cellular and organismal biology. Using the existing biomedical ontologies it has been impossible to capture the complexity of the community's knowledge about biological functions. We present here a top-level ontological framework for representing knowledge about biological functions. This framework lends greater accuracy, power and expressiveness to biomedical ontologies by providing a means to capture existing functional knowledge in a more formal manner. An initial major application of the ontology of functions is the provision of a principled way in which to curate functional knowledge and annotations in biomedical ontologies. Further potential applications include the facilitation of ontology interoperability and automated reasoning. A major advantage of the proposed implementation is that it is an extension to existing biomedical ontologies, and can be applied without substantial changes to these domain ontologies. The Ontology of Functions (OF) can be downloaded in OWL format from http://onto.eva.mpg.de/. Additionally, a UML profile and supplementary information and guides for using the OF can be accessed from the same website.

Automated Gene Ontology annotation for anonymous sequence data.

PubMed

Hennig, Steffen; Groth, Detlef; Lehrach, Hans

2003-07-01

Gene Ontology (GO) is the most widely accepted attempt to construct a unified and structured vocabulary for the description of genes and their products in any organism. Annotation by GO terms is performed in most of the current genome projects, which besides generality has the advantage of being very convenient for computer based classification methods. However, direct use of GO in small sequencing projects is not easy, especially for species not commonly represented in public databases. We present a software package (GOblet), which performs annotation based on GO terms for anonymous cDNA or protein sequences. It uses the species independent GO structure and vocabulary together with a series of protein databases collected from various sites, to perform a detailed GO annotation by sequence similarity searches. The sensitivity and the reference protein sets can be selected by the user. GOblet runs automatically and is available as a public service on our web server. The paper also addresses the reliability of automated GO annotations by using a reference set of more than 6000 human proteins. The GOblet server is accessible at http://goblet.molgen.mpg.de.

A Planetary Companion around a Metal-Poor Star with Extragalactic Origin

NASA Astrophysics Data System (ADS)

Setiawan, Johny; Klement, Rainer; Henning, Thomas; Rix, Hans-Walter; Rochau, Boyke; Schulze-Hartung, Tim; Rodmann, Jens

2011-03-01

We report the detection of a planetary companion around HIP 13044, a metal-poor star on the red Horizontal Branch. The detection is based on radial velocity observations with FEROS, a high-resolution spectrograph at the 2.2-m MPG/ESO telescope, located at ESO La Silla observatory in Chile. The periodic radial velocity variation of P = 16.2 days can be distinguished from the periods of the stellar activity indicators. We computed a minimum planetary mass of 1.25 MJup and an orbital semi-major axis of 0.116 AU for the planet. This discovery is unique in three aspects: First, it is the first planet detection around a star with a metallicity much lower than few percent of the solar value; second, the planet host star resides in a stellar evolutionary stage that is still unexplored in the exoplanet surveys; third, the star HIP 13044 belongs to one of the most significant stellar halo streams in the solar neighborhood, implying an extragalactic origin of the planetary system HIP 13044 in a disrupted former satellite of the Milky Way.

MIPS: a database for genomes and protein sequences.

PubMed Central

Mewes, H W; Heumann, K; Kaps, A; Mayer, K; Pfeiffer, F; Stocker, S; Frishman, D

1999-01-01

The Munich Information Center for Protein Sequences (MIPS-GSF), Martinsried near Munich, Germany, develops and maintains genome oriented databases. It is commonplace that the amount of sequence data available increases rapidly, but not the capacity of qualified manual annotation at the sequence databases. Therefore, our strategy aims to cope with the data stream by the comprehensive application of analysis tools to sequences of complete genomes, the systematic classification of protein sequences and the active support of sequence analysis and functional genomics projects. This report describes the systematic and up-to-date analysis of genomes (PEDANT), a comprehensive database of the yeast genome (MYGD), a database reflecting the progress in sequencing the Arabidopsis thaliana genome (MATD), the database of assembled, annotated human EST clusters (MEST), and the collection of protein sequence data within the framework of the PIR-International Protein Sequence Database (described elsewhere in this volume). MIPS provides access through its WWW server (http://www.mips.biochem.mpg.de) to a spectrum of generic databases, including the above mentioned as well as a database of protein families (PROTFAM), the MITOP database, and the all-against-all FASTA database. PMID:9847138

T-Reg Comparator: an analysis tool for the comparison of position weight matrices.

PubMed

Roepcke, Stefan; Grossmann, Steffen; Rahmann, Sven; Vingron, Martin

2005-07-01

T-Reg Comparator is a novel software tool designed to support research into transcriptional regulation. Sequence motifs representing transcription factor binding sites are usually encoded as position weight matrices. The user inputs a set of such weight matrices or binding site sequences and our program matches them against the T-Reg database, which is presently built on data from the Transfac [E. Wingender (2004) In Silico Biol., 4, 55-61] and Jaspar [A. Sandelin, W. Alkema, P. Engstrom, W. W. Wasserman and B. Lenhard (2004) Nucleic Acids Res., 32, D91-D94]. Our tool delivers a detailed report on similarities between user-supplied motifs and motifs in the database. Apart from simple one-to-one relationships, T-Reg Comparator is also able to detect similarities between submatrices. In addition, we provide a user interface to a program for sequence scanning with weight matrices. Typical areas of application for T-Reg Comparator are motif and regulatory module finding and annotation of regulatory genomic regions. T-Reg Comparator is available at http://treg.molgen.mpg.de.

Infections are a global issue: infection addresses global issues.

PubMed

Grobusch, M P; Calleri, G; Bogner, J R

2012-12-01

Infections are of unifying global concern, despite regional differences in disease epidemiology, clinical appearance and the instruments to tackle them. The primary aim of Infection is "to be a forum for the presentation and discussion of clinically relevant information on infectious diseases… from all over the world". To that end, and as a reflection of the global burden of infectious diseases, we intend to increase the number of high-quality contributions from authors addressing the aetiology, pathogenesis, diagnosis and treatment of infectious diseases from outside Europe and the affluent North (Chang et al. Infection 40:359-365, 2012; Misra et al. Infection 40:125-130, 2012). The Editorial Board of Infection envisages the journal as an interface between where infectious diseases meet and mix between "North and South"--i.e., the field of travel medicine--frequently functioning as a sentinel for altered/novel disease activities that are encountered as imported conditions. With the change in generation on the Editorial Board, Infection aims to expand the areas of tropical medicine, travel medicine and global health with its own section editors (GC and MPG). Contributions from outside Europe are actively encouraged.

Finding Every Root of a Broad Class of Real, Continuous Functions in a Given Interval

NASA Technical Reports Server (NTRS)

Tausworthe, Robert C.; Wolgast, Paul A.

2011-01-01

One of the most pervasive needs within the Deep Space Network (DSN) Metric Prediction Generator (MPG) view period event generation is that of finding solutions to given occurrence conditions. While the general form of an equation expresses equivalence between its left-hand and right-hand expressions, the traditional treatment of the subject subtracts the two sides, leaving an expression of the form Integral of(x) = 0. Values of the independent variable x satisfying this condition are roots, or solutions. Generally speaking, there may be no solutions, a unique solution, multiple solutions, or a continuum of solutions to a given equation. In particular, all view period events are modeled as zero crossings of various metrics; for example, the time at which the elevation of a spacecraft reaches its maximum value, as viewed from a Deep Space Station (DSS), is found by locating that point at which the derivative of the elevation function becomes zero. Moreover, each event type may have several occurrences within a given time interval of interest. For example, a spacecraft in a low Moon orbit will experience several possible occultations per day, each of which must be located in time. The MPG is charged with finding all specified event occurrences that take place within a given time interval (or pass ), without any special clues from operators as to when they may occur, for the entire spectrum of missions undertaken by the DSN. For each event type, the event metric function is a known form that can be computed for any instant within the interval. A method has been created for a mathematical root finder to be capable of finding all roots of an arbitrary continuous function, within a given interval, to be subject to very lenient, parameterized assumptions. One assumption is that adjacent roots are separated at least by a given amount, xGuard. Any point whose function value is less than ef in magnitude is considered to be a root, and the function values at distances xGuard away from a root are larger than ef, unless there is another root located in this vicinity. A root is considered found if, during iteration, two root candidates differ by less than a pre-specified ex, and the optimum cubic polynomial matching the function at the end and at two interval points (that is within a relative error fraction L at its midpoint) is reliable in indicating whether the function has extrema within the interval. The robustness of this method depends solely on choosing these four parameters that control the search. The roots of discontinuous functions were also found, but at degraded performance.

GCView: the genomic context viewer for protein homology searches

PubMed Central

Grin, Iwan; Linke, Dirk

2011-01-01

Genomic neighborhood can provide important insights into evolution and function of a protein or gene. When looking at operons, changes in operon structure and composition can only be revealed by looking at the operon as a whole. To facilitate the analysis of the genomic context of a query in multiple organisms we have developed Genomic Context Viewer (GCView). GCView accepts results from one or multiple protein homology searches such as BLASTp as input. For each hit, the neighboring protein-coding genes are extracted, the regions of homology are labeled for each input and the results are presented as a clear, interactive graphical output. It is also possible to add more searches to iteratively refine the output. GCView groups outputs by the hits for different proteins. This allows for easy comparison of different operon compositions and structures. The tool is embedded in the framework of the Bioinformatics Toolkit of the Max-Planck Institute for Developmental Biology (MPI Toolkit). Job results from the homology search tools inside the MPI Toolkit can be forwarded to GCView and results can be subsequently analyzed by sequence analysis tools. Results are stored online, allowing for later reinspection. GCView is freely available at http://toolkit.tuebingen.mpg.de/gcview. PMID:21609955

VizieR Online Data Catalog: New minima timings and RVs for 3 eclipsing binaries (Zasche+, 2017)

NASA Astrophysics Data System (ADS)

Zasche, P.; Jurysek, J.; Nemravova, J.; Uhlar, R.; Svoboda, P.; Wolf, M.; Honkova, K.; Masek, M.; Prouza, M.; Cechura, J.; Korcakova, D.; Slechta, M.

2018-04-01

Spectroscopy was obtained in two observatories. Most of the data points for these systems came from the Ondrejov observatory and its 2 m telescope (resolution R~12500). Additionally, data on BR Ind and some data on QS Aql were obtained with the FEROS instrument mounted on the 2.2 m MPG telescope located in La Silla Observatory in Chile (R~48000). Photometry for these three systems was collected over the time span of 2008 to 2016. Owing to the relatively high brightness of the targets, only rather small telescopes were used for these photometric observations. The system V773 Cas was observed (by one of the authors, PS) with a 34 mm refractor at a private observatory in Brno, Czech Republic, using an SBIG ST-7XME CCD camera. The star QS Aql was monitored (by one of the authors, RU) with a similar instrument at a private observatory in Jilove u Prahy, Czech Republic, using a G2-0402 CCD camera. The only southern star, BR Ind, was observed with the FRAM telescope (Prouza et al. 2010AdAst2010E..31P), installed and operated at the Pierre Auger Observatory at Malargue, Argentina. (2 data files).

Protein Information Resource: a community resource for expert annotation of protein data

PubMed Central

Barker, Winona C.; Garavelli, John S.; Hou, Zhenglin; Huang, Hongzhan; Ledley, Robert S.; McGarvey, Peter B.; Mewes, Hans-Werner; Orcutt, Bruce C.; Pfeiffer, Friedhelm; Tsugita, Akira; Vinayaka, C. R.; Xiao, Chunlin; Yeh, Lai-Su L.; Wu, Cathy

2001-01-01

The Protein Information Resource, in collaboration with the Munich Information Center for Protein Sequences (MIPS) and the Japan International Protein Information Database (JIPID), produces the most comprehensive and expertly annotated protein sequence database in the public domain, the PIR-International Protein Sequence Database. To provide timely and high quality annotation and promote database interoperability, the PIR-International employs rule-based and classification-driven procedures based on controlled vocabulary and standard nomenclature and includes status tags to distinguish experimentally determined from predicted protein features. The database contains about 200 000 non-redundant protein sequences, which are classified into families and superfamilies and their domains and motifs identified. Entries are extensively cross-referenced to other sequence, classification, genome, structure and activity databases. The PIR web site features search engines that use sequence similarity and database annotation to facilitate the analysis and functional identification of proteins. The PIR-Inter­national databases and search tools are accessible on the PIR web site at http://pir.georgetown.edu/ and at the MIPS web site at http://www.mips.biochem.mpg.de. The PIR-International Protein Sequence Database and other files are also available by FTP. PMID:11125041

Discovery of methyl silane and confirmation of silyl cyanide in IRC +10216

NASA Astrophysics Data System (ADS)

Cernicharo, J.; Agúndez, M.; Velilla Prieto, L.; Guélin, M.; Pardo, J. R.; Kahane, C.; Marka, C.; Kramer, C.; Navarro, S.; Quintana-Lacaci, G.; Fonfría, J. P.; Marcelino, N.; Tercero, B.; Moreno, E.; Massalkhi, S.; Santander-García, M.; McCarthy, M. C.; Gottlieb, C. A.; Alonso, J. L.

2017-10-01

We report the discovery in space of methyl silane, CH3SiH3, from observations of ten rotational transitions between 80 and 350 GHz (Ju from 4 to 16) with the IRAM 30 m radio telescope. The molecule was observed in the envelope of the C-star IRC +10216. The observed profiles and our models for the expected emission of methyl silane suggest that the it is formed in the inner zones of the circumstellar envelope, 1-40 R∗, with an abundance of (0.5-1) × 10-8 relative to H2. We also observed several rotational transitions of silyl cyanide (SiH3CN), confirming its presence in IRC +10216 in particular, and in space in general. Our models indicate that silyl cyanide is also formed in the inner regions of the envelope, around 20 R∗, with an abundance relative to H2 of 6 × 10-10. The possible formation mechanisms of both species are discussed. We also searched for related chemical species but only upper limits could be obtained. This work was based on observations carried out with the IRAM 30-m telescope. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain).

NEFI: Network Extraction From Images

PubMed Central

Dirnberger, M.; Kehl, T.; Neumann, A.

2015-01-01

Networks are amongst the central building blocks of many systems. Given a graph of a network, methods from graph theory enable a precise investigation of its properties. Software for the analysis of graphs is widely available and has been applied to study various types of networks. In some applications, graph acquisition is relatively simple. However, for many networks data collection relies on images where graph extraction requires domain-specific solutions. Here we introduce NEFI, a tool that extracts graphs from images of networks originating in various domains. Regarding previous work on graph extraction, theoretical results are fully accessible only to an expert audience and ready-to-use implementations for non-experts are rarely available or insufficiently documented. NEFI provides a novel platform allowing practitioners to easily extract graphs from images by combining basic tools from image processing, computer vision and graph theory. Thus, NEFI constitutes an alternative to tedious manual graph extraction and special purpose tools. We anticipate NEFI to enable time-efficient collection of large datasets. The analysis of these novel datasets may open up the possibility to gain new insights into the structure and function of various networks. NEFI is open source and available at http://nefi.mpi-inf.mpg.de. PMID:26521675

Newt-omics: a comprehensive repository for omics data from the newt Notophthalmus viridescens

PubMed Central

Bruckskotten, Marc; Looso, Mario; Reinhardt, Richard; Braun, Thomas; Borchardt, Thilo

2012-01-01

Notophthalmus viridescens, a member of the salamander family is an excellent model organism to study regenerative processes due to its unique ability to replace lost appendages and to repair internal organs. Molecular insights into regenerative events have been severely hampered by the lack of genomic, transcriptomic and proteomic data, as well as an appropriate database to store such novel information. Here, we describe ‘Newt-omics’ (http://newt-omics.mpi-bn.mpg.de), a database, which enables researchers to locate, retrieve and store data sets dedicated to the molecular characterization of newts. Newt-omics is a transcript-centred database, based on an Expressed Sequence Tag (EST) data set from the newt, covering ∼50 000 Sanger sequenced transcripts and a set of high-density microarray data, generated from regenerating hearts. Newt-omics also contains a large set of peptides identified by mass spectrometry, which was used to validate 13 810 ESTs as true protein coding. Newt-omics is open to implement additional high-throughput data sets without changing the database structure. Via a user-friendly interface Newt-omics allows access to a huge set of molecular data without the need for prior bioinformatical expertise. PMID:22039101

DOE Office of Scientific and Technical Information (OSTI.GOV)

Collett, Raymond; Howland, James; Venkiteswaran, Prasad

This report examines the benefits of Parker Hannifin hydraulic hybrid brake energy recovery systems used in commercial applications for vocational purposes. A detailed background on the problem statement being addressed as well as the solution set specific for parcel delivery will be provided. Objectives of the demonstration performed in high start & stop applications included opportunities in fuel usage reduction, emissions reduction, vehicle productivity, and vehicle maintenance. Completed findings during the demonstration period and parallel investigations with NREL, CALSTART, along with a literature review will be provided herein on this research area. Lastly, results identified in the study by thirdmore » parties validated the savings potential in fuel reduction of on average of 19% to 52% over the baseline in terms of mpg (Lammert, 2014, p11), Parker data for parcel delivery vehicles in the field parallels this at a range of 35% - 50%, emissions reduction of 17.4% lower CO2 per mile and 30.4% lower NOx per mile (Gallo, 2014, p15), with maintenance improvement in the areas of brake and starter replacement, while leaving room for further study in the area of productivity in terms of specific metrics that can be applied and studied.« less

ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii.

PubMed

May, Patrick; Christian, Jan-Ole; Kempa, Stefan; Walther, Dirk

2009-05-04

The unicellular green alga Chlamydomonas reinhardtii is an important eukaryotic model organism for the study of photosynthesis and plant growth. In the era of modern high-throughput technologies there is an imperative need to integrate large-scale data sets from high-throughput experimental techniques using computational methods and database resources to provide comprehensive information about the molecular and cellular organization of a single organism. In the framework of the German Systems Biology initiative GoFORSYS, a pathway database and web-portal for Chlamydomonas (ChlamyCyc) was established, which currently features about 250 metabolic pathways with associated genes, enzymes, and compound information. ChlamyCyc was assembled using an integrative approach combining the recently published genome sequence, bioinformatics methods, and experimental data from metabolomics and proteomics experiments. We analyzed and integrated a combination of primary and secondary database resources, such as existing genome annotations from JGI, EST collections, orthology information, and MapMan classification. ChlamyCyc provides a curated and integrated systems biology repository that will enable and assist in systematic studies of fundamental cellular processes in Chlamydomonas. The ChlamyCyc database and web-portal is freely available under http://chlamycyc.mpimp-golm.mpg.de.

Coalescence of liquid droplets in micro fluidic device

NASA Astrophysics Data System (ADS)

Wu, Mingming; Cubaud, Thomas; Ho, Chih-Ming; Chiou, Peiyu; Wu, Ming C.

2003-11-01

We study experimentally the initial dynamic process when two droplets (diameter range 100μm -1000μm) merge in micro fluidic device. It is known that passive mixing in micro fluidic device relies mostly on a time consuming process - diffusion. In digital fluidic platform,(S.K. Cho, H. Moon, and C.J. Kim, J. of Microelectromechanical Systems, Vol 12, No 1, 70(2003).) we find that the surface-tension-driven flow at the initial stage of the merging can be used to enhance mixing. In our experiments, the droplets are manipulated by two different methods, and results are compared. In one method, the droplet is manipulated by pressure driven flow in micro channels, and in the other, the droplet is moved using an optical electro-wetting device. The droplet is seeded with 4 μm diameter latex particles for visualizing the mixing process. The outlines of the droplets as well as the flow patterns marked by the latex particles inside the droplets are recorded using a high speed imaging system. This work is supported by the National Science Foundation (CTS-0121340), Institute for CMISE (a NASA URETI), DARPA MPG program, and DARPA Optoelectronics Center Program (CHIPS).

Ground-based detection of the near-infrared emission from the dayside of WASP-5b

NASA Astrophysics Data System (ADS)

Chen, G.; van Boekel, R.; Madhusudhan, N.; Wang, H.; Nikolov, N.; Seemann, U.; Henning, Th.

2014-04-01

Context. Observations of secondary eclipses of hot Jupiters allow one to measure the dayside thermal emission from the planets' atmospheres. The combination of ground-based near-infrared observations and space-based observations at longer wavelengths constrains the atmospheric temperature structure and chemical composition. Aims: This work aims at detecting the thermal emission of WASP-5b, a highly irradiated dense hot Jupiter orbiting a G4V star every 1.6 days, in the J, H and K near-infrared photometric bands. The spectral energy distribution is used to constrain the temperature-pressure profile and to study the energy budget of WASP-5b. Methods: We observed two secondary-eclipse events of WASP-5b in the J, H, K bands simultaneously using the GROND instrument on the MPG/ESO 2.2 m telescope. The telescope was in nodding mode for the first observation and in staring mode for the second observation. The occultation light curves were modeled to obtain the flux ratios in each band, which were then compared with atmospheric models. Results: Thermal emission of WASP-5b is detected in the J and K bands in staring mode. The retrieved planet-to-star flux ratios are 0.168-0.052+0.050% in the J band and 0.269 ± 0.062% in the K band, corresponding to brightness temperatures of 2996-261+212 K and 2890-269+246 K, respectively. No thermal emission is detected in the H band, with a 3σ upper limit of 0.166% on the planet-to-star flux ratio, corresponding to a maximum temperature of 2779 K. On the whole, our J, H, K results can be explained by a roughly isothermal temperature profile of ~2700 K in the deep layers of the planetary dayside atmosphere that are probed at these wavelengths. Together with Spitzer observations, which probe higher layers that are found to be at ~1900 K, a temperature inversion is ruled out in the range of pressures probed by the combined data set. While an oxygen-rich model is unable to explain all the data, a carbon-rich model provides a reasonable fit but violates energy balance. The nodding-mode observation was not used for the analysis because of unremovable systematics. Our experience reconfirms that of previous authors: staring-mode observations are better suited for exoplanet observations than nodding-mode observations. Based on observations collected with the Gamma Ray Burst Optical and Near-Infrared Detector (GROND) at the MPG/ESO 2.2-m telescope at La Silla Observatory, Chile. Programme 087.A-9006 (PI: Chen).Photometric time series are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/564/A6Appendix A is available in electronic form at http://www.aanda.org

DeepBlue epigenomic data server: programmatic data retrieval and analysis of epigenome region sets

PubMed Central

Albrecht, Felipe; List, Markus; Bock, Christoph; Lengauer, Thomas

2016-01-01

Large amounts of epigenomic data are generated under the umbrella of the International Human Epigenome Consortium, which aims to establish 1000 reference epigenomes within the next few years. These data have the potential to unravel the complexity of epigenomic regulation. However, their effective use is hindered by the lack of flexible and easy-to-use methods for data retrieval. Extracting region sets of interest is a cumbersome task that involves several manual steps: identifying the relevant experiments, downloading the corresponding data files and filtering the region sets of interest. Here we present the DeepBlue Epigenomic Data Server, which streamlines epigenomic data analysis as well as software development. DeepBlue provides a comprehensive programmatic interface for finding, selecting, filtering, summarizing and downloading region sets. It contains data from four major epigenome projects, namely ENCODE, ROADMAP, BLUEPRINT and DEEP. DeepBlue comes with a user manual, examples and a well-documented application programming interface (API). The latter is accessed via the XML-RPC protocol supported by many programming languages. To demonstrate usage of the API and to enable convenient data retrieval for non-programmers, we offer an optional web interface. DeepBlue can be openly accessed at http://deepblue.mpi-inf.mpg.de. PMID:27084938

ClubSub-P: Cluster-Based Subcellular Localization Prediction for Gram-Negative Bacteria and Archaea

PubMed Central

Paramasivam, Nagarajan; Linke, Dirk

2011-01-01

The subcellular localization (SCL) of proteins provides important clues to their function in a cell. In our efforts to predict useful vaccine targets against Gram-negative bacteria, we noticed that misannotated start codons frequently lead to wrongly assigned SCLs. This and other problems in SCL prediction, such as the relatively high false-positive and false-negative rates of some tools, can be avoided by applying multiple prediction tools to groups of homologous proteins. Here we present ClubSub-P, an online database that combines existing SCL prediction tools into a consensus pipeline from more than 600 proteomes of fully sequenced microorganisms. On top of the consensus prediction at the level of single sequences, the tool uses clusters of homologous proteins from Gram-negative bacteria and from Archaea to eliminate false-positive and false-negative predictions. ClubSub-P can assign the SCL of proteins from Gram-negative bacteria and Archaea with high precision. The database is searchable, and can easily be expanded using either new bacterial genomes or new prediction tools as they become available. This will further improve the performance of the SCL prediction, as well as the detection of misannotated start codons and other annotation errors. ClubSub-P is available online at http://toolkit.tuebingen.mpg.de/clubsubp/ PMID:22073040

Transport Properties of Thin Bismuth Films on InP (110) Surfaces by Scanning Tunneling Potentiometry

NASA Astrophysics Data System (ADS)

Feenstra, R. M.; Briner, B. G.; Chin, T. P.; Woodall, J. M.

1996-03-01

Charge transport in 20--30 Å thick Bi-films is studied by scanning tunneling potentiometry (STP) at room temperature. The Bi is deposited on cleaved InP(110) surfaces at temperatures near 140 K, yielding atomically flat films interspersed with 12 Å deep holes. The InP substrates contain conducting/insulating/conducting layers, which in cross-section are used to form contacts to the film, thus enabling lateral current densities as high as 8 × 10^6 A/cm^2 . Potential variations due to scattering of this lateral current is detected using STP, by locating the zero-crossing of current-voltage characteristics at each pixel in an image. Potential images reveal, on a coarse scale, a smooth ramp arising from the electric field due to phonon scattering in the film, from which an electron-phonon scattering length of >1000 Å is deduced. On a finer scale, potential steps 2--10 mV high are seen near surface holes and grain boundaries in the film. Detailed study of the ballistic scattering near the holes reveals a dipole shaped feature, which is identified as a residual resistivity dipole. *present address: Physics, Carnegie Mellon Univ., Pittsburgh PA 15213 **now at: Fritz-Haber-Institut, 14195 Berlin, briner@fhi-berlin.mpg.de

Efficient simulation of intrinsic, extrinsic and external noise in biochemical systems

PubMed Central

Pischel, Dennis; Sundmacher, Kai; Flassig, Robert J.

2017-01-01

Abstract Motivation: Biological cells operate in a noisy regime influenced by intrinsic, extrinsic and external noise, which leads to large differences of individual cell states. Stochastic effects must be taken into account to characterize biochemical kinetics accurately. Since the exact solution of the chemical master equation, which governs the underlying stochastic process, cannot be derived for most biochemical systems, approximate methods are used to obtain a solution. Results: In this study, a method to efficiently simulate the various sources of noise simultaneously is proposed and benchmarked on several examples. The method relies on the combination of the sigma point approach to describe extrinsic and external variability and the τ-leaping algorithm to account for the stochasticity due to probabilistic reactions. The comparison of our method to extensive Monte Carlo calculations demonstrates an immense computational advantage while losing an acceptable amount of accuracy. Additionally, the application to parameter optimization problems in stochastic biochemical reaction networks is shown, which is rarely applied due to its huge computational burden. To give further insight, a MATLAB script is provided including the proposed method applied to a simple toy example of gene expression. Availability and implementation: MATLAB code is available at Bioinformatics online. Contact: flassig@mpi-magdeburg.mpg.de Supplementary information: Supplementary data are available at Bioinformatics online. PMID:28881987

A 3000 TNOs Survey Project at ESO La Silla

NASA Astrophysics Data System (ADS)

Boehnhardt, H.; Hainaut, O.

We propose a wide-shallow TNO search to be done with the Wide Field Imager (WFI) instrument at the 2.2m MPG/ESO telescope in La Silla/Chile. The WFI is a half-deg camera equipped with an 8kx8k CCD (0.24 arcsec/pixel). The telescope can support excellent seeing quality down to 0.5arcsec FWHM. A TNO search pilot project was run with the 2.2m+WFI in 1999: images with just 1.6sdeg sky coverage and typically 24mag limiting brightness revealed 6 new TNOs when processed with our new automatic detection program MOVIE. The project is now continued on a somewhat larger scale in order to find more TNOs and to fine-tune the operational environment for a full automatic on-line detection, astrometry and photometry of the objects at the telescope. The future goal is to perform - with the 2.2m+WFI and in an international colaboration - an even larger TNO survey over a major part of the sky (typically 2000sdeg in and out of Ecliptic) down to 24mag. Follow-up astrometry and photometry of the expected more than 3000 discovered objects will secure their orbital and physical characterisation for synoptic dynamical and taxonomic studies of the Transneptunian population.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carrington, David Bradley; Waters, Jiajia

Research and development of KIVA-hpFE for turbulent reactive and multiphase flow particularly as related to engine modeling program has relevance to National energy security and climate change. Climate change is a source problem, and energy national security is consumption of petroleum products problem. Accurately predicting engine processes leads to, lower greenhouse gas (GHG) emission, where engines in the transportation sector currently account for 26% of the U.S. GHG emissions. Less dependence on petroleum products leads to greater energy security. By Environmental Protection Agency standards, some vehicles are now reaching 42 to the 50 mpg mark. These are conventional gasoline engines.more » Continued investment and research into new technical innovations, the potential exists to save more than 4 million barrels of oil per day or approximately $200 to $400 million per day. This would be a significant decrease in emission and use of petroleum and a very large economic stimulus too! It is estimated with further advancements in combustion, the current emissions can be reduced up to 40%. Enabling better understanding of fuel injection and fuel-air mixing, thermodynamic combustion losses, and combustion/emission formation processes enhances our ability to help solve both problems. To provide adequate capability for accurately simulating these processes, minimize time and labor for development of engine technology, are the goals of our KIVA development program.« less

Complex organic molecules in comets C/2012 F6 (Lemmon) and C/2013 R1 (Lovejoy): detection of ethylene glycol and formamide

NASA Astrophysics Data System (ADS)

Biver, N.; Bockelée-Morvan, D.; Debout, V.; Crovisier, J.; Boissier, J.; Lis, D. C.; Dello Russo, N.; Moreno, R.; Colom, P.; Paubert, G.; Vervack, R.; Weaver, H. A.

2014-06-01

A spectral survey in the 1 mm wavelength range was undertaken in the long-period comets C/2012 F6 (Lemmon) and C/2013 R1 (Lovejoy) using the 30 m telescope of the Institut de radioastronomie millimétrique (IRAM) in April and November-December 2013. We report the detection of ethylene glycol (CH2OH)2 (aGg' conformer) and formamide (NH2CHO) in the two comets. The abundances relative to water of ethylene glycol and formamide are 0.2-0.3% and 0.02% in the two comets, similar to the values measured in comet C/1995 O1 (Hale-Bopp). We also report the detection of HCOOH and CH3CHO in comet C/2013 R1 (Lovejoy), and a search for other complex species (methyl formate, glycolaldehyde). Based on observations carried out with the IRAM 30 m telescope. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain).Tables 4 and 5 are available in electronic form at http://www.aanda.orgThe IRAM dataset is available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/566/L5

Introducing the slime mold graph repository

NASA Astrophysics Data System (ADS)

Dirnberger, M.; Mehlhorn, K.; Mehlhorn, T.

2017-07-01

We introduce the slime mold graph repository or SMGR, a novel data collection promoting the visibility, accessibility and reuse of experimental data revolving around network-forming slime molds. By making data readily available to researchers across multiple disciplines, the SMGR promotes novel research as well as the reproduction of original results. While SMGR data may take various forms, we stress the importance of graph representations of slime mold networks due to their ease of handling and their large potential for reuse. Data added to the SMGR stands to gain impact beyond initial publications or even beyond its domain of origin. We initiate the SMGR with the comprehensive Kist Europe data set focusing on the slime mold Physarum polycephalum, which we obtained in the course of our original research. It contains sequences of images documenting growth and network formation of the organism under constant conditions. Suitable image sequences depicting the typical P. polycephalum network structures are used to compute sequences of graphs faithfully capturing them. Given such sequences, node identities are computed, tracking the development of nodes over time. Based on this information we demonstrate two out of many possible ways to begin exploring the data. The entire data set is well-documented, self-contained and ready for inspection at http://smgr.mpi-inf.mpg.de.

BiCluE - Exact and heuristic algorithms for weighted bi-cluster editing of biomedical data

PubMed Central

2013-01-01

Background The explosion of biological data has dramatically reformed today's biology research. The biggest challenge to biologists and bioinformaticians is the integration and analysis of large quantity of data to provide meaningful insights. One major problem is the combined analysis of data from different types. Bi-cluster editing, as a special case of clustering, which partitions two different types of data simultaneously, might be used for several biomedical scenarios. However, the underlying algorithmic problem is NP-hard. Results Here we contribute with BiCluE, a software package designed to solve the weighted bi-cluster editing problem. It implements (1) an exact algorithm based on fixed-parameter tractability and (2) a polynomial-time greedy heuristics based on solving the hardest part, edge deletions, first. We evaluated its performance on artificial graphs. Afterwards we exemplarily applied our implementation on real world biomedical data, GWAS data in this case. BiCluE generally works on any kind of data types that can be modeled as (weighted or unweighted) bipartite graphs. Conclusions To our knowledge, this is the first software package solving the weighted bi-cluster editing problem. BiCluE as well as the supplementary results are available online at http://biclue.mpi-inf.mpg.de. PMID:24565035

Hα imaging for BeXRBs in the Small Magellanic Cloud

NASA Astrophysics Data System (ADS)

Maravelias, G.; Zezas, A.; Antoniou, V.; Hatzidimitriou, D.; Haberl, F.

2017-11-01

The Small Magellanic Cloud (SMC) hosts a large number of high-mass X-ray binaries, and in particular of Be/X-ray Binaries (BeXRBs; neutron stars orbiting OBe-type stars), offering a unique laboratory to address the effect of metalicity. One key property of their optical companion is Hα in emission, which makes them bright sources when observed through a narrow-band Hα filter. We performed a survey of the SMC Bar and Wing regions using wide-field cameras (WFI@MPG/ESO and MOSAIC@CTIO/Blanco) in order to identify the counterparts of the sources detected in our XMM-Newton survey of the same area. We obtained broad-band R and narrow-band Hα photometry, and identified ~10000 Hα emission sources down to a sensitivity limit of 18.7 mag (equivalent to ~B8 type Main Sequence stars). We find the fraction of OBe/OB stars to be 13% down to this limit, and by investigating this fraction as a function of the brightness of the stars we deduce that Hα excess peaks at the O9-B2 spectral range. Using the most up-to-date numbers of SMC BeXRBs we find their fraction over their parent population to be ~0.002 - 0.025 BeXRBs/OBe, a direct measurement of their formation rate.

NIFTY - Numerical Information Field Theory. A versatile PYTHON library for signal inference

NASA Astrophysics Data System (ADS)

Selig, M.; Bell, M. R.; Junklewitz, H.; Oppermann, N.; Reinecke, M.; Greiner, M.; Pachajoa, C.; Enßlin, T. A.

2013-06-01

NIFTy (Numerical Information Field Theory) is a software package designed to enable the development of signal inference algorithms that operate regardless of the underlying spatial grid and its resolution. Its object-oriented framework is written in Python, although it accesses libraries written in Cython, C++, and C for efficiency. NIFTy offers a toolkit that abstracts discretized representations of continuous spaces, fields in these spaces, and operators acting on fields into classes. Thereby, the correct normalization of operations on fields is taken care of automatically without concerning the user. This allows for an abstract formulation and programming of inference algorithms, including those derived within information field theory. Thus, NIFTy permits its user to rapidly prototype algorithms in 1D, and then apply the developed code in higher-dimensional settings of real world problems. The set of spaces on which NIFTy operates comprises point sets, n-dimensional regular grids, spherical spaces, their harmonic counterparts, and product spaces constructed as combinations of those. The functionality and diversity of the package is demonstrated by a Wiener filter code example that successfully runs without modification regardless of the space on which the inference problem is defined. NIFTy homepage http://www.mpa-garching.mpg.de/ift/nifty/; Excerpts of this paper are part of the NIFTy source code and documentation.

PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species[W][OA

PubMed Central

Mutwil, Marek; Klie, Sebastian; Tohge, Takayuki; Giorgi, Federico M.; Wilkins, Olivia; Campbell, Malcolm M.; Fernie, Alisdair R.; Usadel, Björn; Nikoloski, Zoran; Persson, Staffan

2011-01-01

The model organism Arabidopsis thaliana is readily used in basic research due to resource availability and relative speed of data acquisition. A major goal is to transfer acquired knowledge from Arabidopsis to crop species. However, the identification of functional equivalents of well-characterized Arabidopsis genes in other plants is a nontrivial task. It is well documented that transcriptionally coordinated genes tend to be functionally related and that such relationships may be conserved across different species and even kingdoms. To exploit such relationships, we constructed whole-genome coexpression networks for Arabidopsis and six important plant crop species. The interactive networks, clustered using the HCCA algorithm, are provided under the banner PlaNet (http://aranet.mpimp-golm.mpg.de). We implemented a comparative network algorithm that estimates similarities between network structures. Thus, the platform can be used to swiftly infer similar coexpressed network vicinities within and across species and can predict the identity of functional homologs. We exemplify this using the PSA-D and chalcone synthase-related gene networks. Finally, we assessed how ontology terms are transcriptionally connected in the seven species and provide the corresponding MapMan term coexpression networks. The data support the contention that this platform will considerably improve transfer of knowledge generated in Arabidopsis to valuable crop species. PMID:21441431

SGP-1: Prediction and Validation of Homologous Genes Based on Sequence Alignments

PubMed Central

Wiehe, Thomas; Gebauer-Jung, Steffi; Mitchell-Olds, Thomas; Guigó, Roderic

2001-01-01

Conventional methods of gene prediction rely on the recognition of DNA-sequence signals, the coding potential or the comparison of a genomic sequence with a cDNA, EST, or protein database. Reasons for limited accuracy in many circumstances are species-specific training and the incompleteness of reference databases. Lately, comparative genome analysis has attracted increasing attention. Several analysis tools that are based on human/mouse comparisons are already available. Here, we present a program for the prediction of protein-coding genes, termed SGP-1 (Syntenic Gene Prediction), which is based on the similarity of homologous genomic sequences. In contrast to most existing tools, the accuracy of SGP-1 depends little on species-specific properties such as codon usage or the nucleotide distribution. SGP-1 may therefore be applied to nonstandard model organisms in vertebrates as well as in plants, without the need for extensive parameter training. In addition to predicting genes in large-scale genomic sequences, the program may be useful to validate gene structure annotations from databases. To this end, SGP-1 output also contains comparisons between predicted and annotated gene structures in HTML format. The program can be accessed via a Web server at http://soft.ice.mpg.de/sgp-1. The source code, written in ANSI C, is available on request from the authors. PMID:11544202

NON-LOCAL THERMODYNAMICAL EQUILIBRIUM EFFECTS ON THE IRON ABUNDANCE OF ASYMPTOTIC GIANT BRANCH STARS IN 47 TUCANAE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lapenna, E.; Mucciarelli, A.; Lanzoni, B.

2014-12-20

We present the iron abundance of 24 asymptotic giant branch (AGB) stars, members of the globular cluster 47 Tucanae, obtained with high-resolution spectra collected with the FEROS spectrograph at the MPG/ESO 2.2 m Telescope. We find that the iron abundances derived from neutral lines (with a mean value [Fe I/H] =–0.94 ± 0.01, σ = 0.08 dex) are systematically lower than those derived from single ionized lines ([Fe II/H] =–0.83 ± 0.01, σ = 0.05 dex). Only the latter are in agreement with those obtained for a sample of red giant branch (RGB) cluster stars, for which the Fe I andmore » Fe II lines provide the same iron abundance. This finding suggests that non-local thermodynamical equilibrium (NLTE) effects driven by overionization mechanisms are present in the atmosphere of AGB stars and significantly affect the Fe I lines while leaving Fe II features unaltered. On the other hand, the very good ionization equilibrium found for RGB stars indicates that these NLTE effects may depend on the evolutionary stage. We discuss the impact of this finding on both the chemical analysis of AGB stars and on the search for evolved blue stragglers.« less

AlignMe—a membrane protein sequence alignment web server

PubMed Central

Stamm, Marcus; Staritzbichler, René; Khafizov, Kamil; Forrest, Lucy R.

2014-01-01

We present a web server for pair-wise alignment of membrane protein sequences, using the program AlignMe. The server makes available two operational modes of AlignMe: (i) sequence to sequence alignment, taking two sequences in fasta format as input, combining information about each sequence from multiple sources and producing a pair-wise alignment (PW mode); and (ii) alignment of two multiple sequence alignments to create family-averaged hydropathy profile alignments (HP mode). For the PW sequence alignment mode, four different optimized parameter sets are provided, each suited to pairs of sequences with a specific similarity level. These settings utilize different types of inputs: (position-specific) substitution matrices, secondary structure predictions and transmembrane propensities from transmembrane predictions or hydrophobicity scales. In the second (HP) mode, each input multiple sequence alignment is converted into a hydrophobicity profile averaged over the provided set of sequence homologs; the two profiles are then aligned. The HP mode enables qualitative comparison of transmembrane topologies (and therefore potentially of 3D folds) of two membrane proteins, which can be useful if the proteins have low sequence similarity. In summary, the AlignMe web server provides user-friendly access to a set of tools for analysis and comparison of membrane protein sequences. Access is available at http://www.bioinfo.mpg.de/AlignMe PMID:24753425

EarthSLOT (an Earth Science, Logistics, and Outreach Terrainbase): Or, How You Can Create 3D, Interactive Visualizations of the Earth with Little or No Funds.

NASA Astrophysics Data System (ADS)

Prokein, P.; Nolan, M.

2004-12-01

In spring of 2004 we received a Small Grant for Exploratory Research (SGER) from the NSF's Office of Polar Program's Arctic Logistics and Research Support program to create an internet-based, interactive, 3D terrain and data visualization system of the Arctic. A preliminary version of this application, called EarthSLOT, can now be found on-line at www.earthslot.org. EarthSLOT allows users to visualize the earth, whether as a spinning globe from space or from the sea-floor looking up at a mid-ocean ridge or anywhere in between. Flight controls range from completely interactive to following pre-planned routes, and the visualizations can be done real-time over the internet or saved as screen shots or MPG movies. The purpose of this project is to put easy-to-use 3D terrain and visualization tools into the hands of many users at little or no cost to them, by taking care of the complicated and expensive work ourselves. Therefore EarthSLOT may be an ideal tool for scientists with low outreach budgets to share their research with other scientists or the public. Those on a very low budget can use EarthSLOT for free, as can any ordinary user, without modifying it or adding their own data. Example uses would be analyzing the terrain surrounding a field site, adding a 3D visualization of a study area to a presentation, or exploring the vector data added by others to their study areas. Those with about \\$1200 to spend on the necessary commercial software can add their own content to the existing application. For example, an ecologist can add or create shapefiles that outlines their study plots and then link those outlines to web pages containing data or further information. Or a glaciologist can superimpose the locations of mass balance stakes and weather stations on the surface of a glacier, then create an mpg movie that starts in space and zooms down to the stake level to visualize how weather systems on a planetary scale relate to the local measurements. Or scientists/educators can teleconference and use the software's collaborative tools such that one user can control the displays of the others', guiding them to points of interest in 3D over the internet. EarthSLOT is a new and evolving project and we are seeking input from potential user communities on ways to improve it as well as ways to diversify and strengthen its funding base. Combinations of any resolution digital elevation models or imagery can be used in EarthSLOT, and we plan to use global Landsat mosaics as the minimum level of imagery. One way to improve this is through contributions of higher resolution data from users. Our current funding is arctic-based, but the application itself is global in nature. We are therefore seeking new funding sources to help support developments in other regions of the globe and ensure that EarthSLOT can remain on-line as a low-cost resource for as many users as possible.

Cigarette Smoking Promotes Infection of Cervical Cells by High-Risk Human Papillomaviruses, but not Subsequent E7 Oncoprotein Expression

PubMed Central

Vryzas, Dimos; Chatzaki, Ekaterini; Koch, Isabel; Soutschek, Erwin; Boecher, Oliver; Tsertanidou, Athena; Maglaveras, Nikolaos; Jansen-Duerr, Pidder; Agorastos, Theodoros

2018-01-01

Persistent cervical infection with high-risk human papillomaviruses (hrHPVs) is a necessary, but not sufficient, condition for the development of cervical cancer. Therefore, there are other co-factors facilitating the hrHPV carcinogenic process, one of which is smoking. To assess the effect of smoking on high-risk (hr) HPV DNA positivity and on the expression of HPV E7 oncoprotein, as a surrogate of persistent hrHPV infection, we used data from women recruited for the PIPAVIR project, which examined the role of E7 protein detection in cervical cancer screening. Women were tested for hrHPV DNA, using Multiplex Genotyping (MPG), and E7 protein, using a novel sandwich ELISA method, and gave information on their smoking habits. Among 1473 women, hrHPV prevalence was 19.1%. The odds ratio (OR) for hrHPV positivity of smokers compared to non-smokers was 1.785 (95% confidence intervals (CI): 1.365–2.332, p < 0.001). The ORs for E7 positivity, concerning hrHPV positive women, ranged from 0.720 to 1.360 depending on the E7 detection assay used, but this was not statistically significant. Smoking increases the probability of hrHPV infection, and smoking intensity is positively associated to this increase. Smoking is not related to an increased probability of E7 protein positivity for hrHPV positive women. PMID:29385075

Evaluation of repeated measurements of radon-222 concentrations in well water sampled from bedrock aquifers of the Piedmont near Richmond, Virginia, USA: effects of lithology and well characteristics.

PubMed

Harris, Shelley A; Billmeyer, Ernest R; Robinson, Michael A

2006-07-01

Radon (222Rn) concentrations in 26 ground water wells of two distinct lithologies in the Piedmont of Virginia were measured to assess variation in ground water radon concentrations (GWRC), to evaluate differences in concentrations related to well characteristics, lithology, and spatial distributions, and to assess the feasibility of predicting GWRC. Wells were sampled in accordance with American Public Health Association Method 7500 Rn-B, with modifications to include a well shaft profile analysis that determined the minimum purge time sufficient to remove the equivalent of one column of water from each well. Statistically significant differences in GWRC were found in the Trssu (1482 +/- 1711 pCi/L) and Mpg (7750 +/- 5188 pCi/L) lithologies, however, no significant differences were found among GWRC at each well over time. Using multiple regression, 86% of the variability (R2) in the GWRC was explained by the lithology, latitudinal class, and water table elevation of the wells. The GWRC in a majority of the wells studied exceed US Environmental Protection Agency designated maximum contaminant level and AMCL. Results support modifications to sampling procedures and indicate that, in previous studies, variations in GWRC concentrations over time may have been due in part to differences in sampling procedures and not in source water.

Efficient key pathway mining: combining networks and OMICS data.

PubMed

Alcaraz, Nicolas; Friedrich, Tobias; Kötzing, Timo; Krohmer, Anton; Müller, Joachim; Pauling, Josch; Baumbach, Jan

2012-07-01

Systems biology has emerged over the last decade. Driven by the advances in sophisticated measurement technology the research community generated huge molecular biology data sets. These comprise rather static data on the interplay of biological entities, for instance protein-protein interaction network data, as well as quite dynamic data collected for studying the behavior of individual cells or tissues in accordance with changing environmental conditions, such as DNA microarrays or RNA sequencing. Here we bring the two different data types together in order to gain higher level knowledge. We introduce a significantly improved version of the KeyPathwayMiner software framework. Given a biological network modelled as a graph and a set of expression studies, KeyPathwayMiner efficiently finds and visualizes connected sub-networks where most components are expressed in most cases. It finds all maximal connected sub-networks where all nodes but k exceptions are expressed in all experimental studies but at most l exceptions. We demonstrate the power of the new approach by comparing it to similar approaches with gene expression data previously used to study Huntington's disease. In addition, we demonstrate KeyPathwayMiner's flexibility and applicability to non-array data by analyzing genome-scale DNA methylation profiles from colorectal tumor cancer patients. KeyPathwayMiner release 2 is available as a Cytoscape plugin and online at http://keypathwayminer.mpi-inf.mpg.de.

Efficient simulation of intrinsic, extrinsic and external noise in biochemical systems.

PubMed

Pischel, Dennis; Sundmacher, Kai; Flassig, Robert J

2017-07-15

Biological cells operate in a noisy regime influenced by intrinsic, extrinsic and external noise, which leads to large differences of individual cell states. Stochastic effects must be taken into account to characterize biochemical kinetics accurately. Since the exact solution of the chemical master equation, which governs the underlying stochastic process, cannot be derived for most biochemical systems, approximate methods are used to obtain a solution. In this study, a method to efficiently simulate the various sources of noise simultaneously is proposed and benchmarked on several examples. The method relies on the combination of the sigma point approach to describe extrinsic and external variability and the τ -leaping algorithm to account for the stochasticity due to probabilistic reactions. The comparison of our method to extensive Monte Carlo calculations demonstrates an immense computational advantage while losing an acceptable amount of accuracy. Additionally, the application to parameter optimization problems in stochastic biochemical reaction networks is shown, which is rarely applied due to its huge computational burden. To give further insight, a MATLAB script is provided including the proposed method applied to a simple toy example of gene expression. MATLAB code is available at Bioinformatics online. flassig@mpi-magdeburg.mpg.de. Supplementary data are available at Bioinformatics online. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

Evaluation of repeated measurements of radon-222 concentrations in well water sampled from bedrock aquifers of the Piedmont near Richmond, Virginia, USA: Effects of lithology and well characteristics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harris, Shelley A.; Billmeyer, Ernest R.; Robinson, Michael A.

Radon ({sup 222}Rn) concentrations in 26 ground water wells of two distinct lithologies in the Piedmont of Virginia were measured to assess variation in ground water radon concentrations (GWRC), to evaluate differences in concentrations related to well characteristics, lithology, and spatial distributions, and to assess the feasibility of predicting GWRC. Wells were sampled in accordance with American Public Health Association Method 7500 Rn-B, with modifications to include a well shaft profile analysis that determined the minimum purge time sufficient to remove the equivalent of one column of water from each well. Statistically significant differences in GWRC were found in themore » Trssu (1482{+-}1711 pCi/L) and Mpg (7750{+-}5188 pCi/L) lithologies, however, no significant differences were found among GWRC at each well over time. Using multiple regression, 86% of the variability (R {sup 2}) in the GWRC was explained by the lithology, latitudinal class, and water table elevation of the wells. The GWRC in a majority of the wells studied exceed US Environmental Protection Agency designated maximum contaminant level and AMCL. Results support modifications to sampling procedures and indicate that, in previous studies, variations in GWRC concentrations over time may have been due in part to differences in sampling procedures and not in source water.« less

NOXclass: prediction of protein-protein interaction types.

PubMed

Zhu, Hongbo; Domingues, Francisco S; Sommer, Ingolf; Lengauer, Thomas

2006-01-19

Structural models determined by X-ray crystallography play a central role in understanding protein-protein interactions at the molecular level. Interpretation of these models requires the distinction between non-specific crystal packing contacts and biologically relevant interactions. This has been investigated previously and classification approaches have been proposed. However, less attention has been devoted to distinguishing different types of biological interactions. These interactions are classified as obligate and non-obligate according to the effect of the complex formation on the stability of the protomers. So far no automatic classification methods for distinguishing obligate, non-obligate and crystal packing interactions have been made available. Six interface properties have been investigated on a dataset of 243 protein interactions. The six properties have been combined using a support vector machine algorithm, resulting in NOXclass, a classifier for distinguishing obligate, non-obligate and crystal packing interactions. We achieve an accuracy of 91.8% for the classification of these three types of interactions using a leave-one-out cross-validation procedure. NOXclass allows the interpretation and analysis of protein quaternary structures. In particular, it generates testable hypotheses regarding the nature of protein-protein interactions, when experimental results are not available. We expect this server will benefit the users of protein structural models, as well as protein crystallographers and NMR spectroscopists. A web server based on the method and the datasets used in this study are available at http://noxclass.bioinf.mpi-inf.mpg.de/.

Hexicon 2: Automated Processing of Hydrogen-Deuterium Exchange Mass Spectrometry Data with Improved Deuteration Distribution Estimation

NASA Astrophysics Data System (ADS)

Lindner, Robert; Lou, Xinghua; Reinstein, Jochen; Shoeman, Robert L.; Hamprecht, Fred A.; Winkler, Andreas

2014-06-01

Hydrogen-deuterium exchange (HDX) experiments analyzed by mass spectrometry (MS) provide information about the dynamics and the solvent accessibility of protein backbone amide hydrogen atoms. Continuous improvement of MS instrumentation has contributed to the increasing popularity of this method; however, comprehensive automated data analysis is only beginning to mature. We present Hexicon 2, an automated pipeline for data analysis and visualization based on the previously published program Hexicon (Lou et al. 2010). Hexicon 2 employs the sensitive NITPICK peak detection algorithm of its predecessor in a divide-and-conquer strategy and adds new features, such as chromatogram alignment and improved peptide sequence assignment. The unique feature of deuteration distribution estimation was retained in Hexicon 2 and improved using an iterative deconvolution algorithm that is robust even to noisy data. In addition, Hexicon 2 provides a data browser that facilitates quality control and provides convenient access to common data visualization tasks. Analysis of a benchmark dataset demonstrates superior performance of Hexicon 2 compared with its predecessor in terms of deuteration centroid recovery and deuteration distribution estimation. Hexicon 2 greatly reduces data analysis time compared with manual analysis, whereas the increased number of peptides provides redundant coverage of the entire protein sequence. Hexicon 2 is a standalone application available free of charge under http://hx2.mpimf-heidelberg.mpg.de.

KIVA-hpFE. Predictive turbulent reactive and multiphase flow in engines - An Overview

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carrington, David Bradley

2016-05-23

Research and development of KIVA-hpFE for turbulent reactive and multiphase flow particularly as related to engine modeling program has relevance to National energy security and climate change. Climate change is a source problem, and energy national security is consumption of petroleum products problem. Accurately predicting engine processes leads to, lower greenhouse gas (GHG) emission, where engines in the transportation sector currently account for 26% of the U.S. GHG emissions. Less dependence on petroleum products leads to greater energy security. By Environmental Protection Agency standards, some vehicles are now reaching 42 to the 50 mpg mark. These are conventional gasoline engines.more » Continued investment and research into new technical innovations, the potential exists to save more than 4 million barrels of oil per day or approximately $200 to $400 million per day. This would be a significant decrease in emission and use of petroleum and a very large economic stimulus too! It is estimated with further advancements in combustion, the current emissions can be reduced up to 40%. Enabling better understanding of fuel injection and fuel-air mixing, thermodynamic combustion losses, and combustion/emission formation processes enhances our ability to help solve both problems. To provide adequate capability for accurately simulating these processes, minimize time and labor for development of engine technology, are the goals of our KIVA development program.« less

GROND coverage of the main peak of gamma-ray burst 130925A

NASA Astrophysics Data System (ADS)

Greiner, J.; Yu, H.-F.; Krühler, T.; Frederiks, D. D.; Beloborodov, A.; Bhat, P. N.; Bolmer, J.; van Eerten, H.; Aptekar, R. L.; Elliott, J.; Golenetskii, S. V.; Graham, J. F.; Hurley, K.; Kann, D. A.; Klose, S.; Nicuesa Guelbenzu, A.; Rau, A.; Schady, P.; Schmidl, S.; Sudilovsky, V.; Svinkin, D. S.; Tanga, M.; Ulanov, M. V.; Varela, K.; von Kienlin, A.; Zhang, X.-L.

2014-08-01

Aims: Prompt or early optical emission in gamma-ray bursts (GRBs) is notoriously difficult to measure, and observations of the dozen cases show a large variety of properties. Yet, such early emission promises to help us achieve a better understanding of the GRB emission process(es). Methods: We performed dedicated observations of the ultra-long duration (T90 about 7000 s) Swift GRB 130925A in the optical/near-infrared with the 7-channel Gamma-Ray burst Optical and Near-infrared Detector (GROND) at the 2.2 m MPG/ESO telescope. Results: We detect an optical/near-infrared flare with an amplitude of nearly 2 mag which is delayed with respect to the keV-MeV prompt emission by about 300-400 s. The decay time of this flare is shorter than the duration of the flare (500 s) or its delay. Conclusions: While we cannot offer a straightforward explanation, we discuss the implications of the flare properties and suggest ways toward understanding it. Partly based on observations collected at the European Organisation for Astronomical Research in the Southern Hemisphere under ID 092.A-0231(B).The GROND photometry table is only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/568/A75

VizieR Online Data Catalog: PS1 z>5.6 quasars follow-up (Banados+, 2016)

NASA Astrophysics Data System (ADS)

Banados, E.; Venemans, B. P.; Decarli, R.; Farina, E. P.; Mazzucchelli, C.; Walter, F.; Fan, X.; Stern, D.; Schlafly, E.; Chambers, K. C.; Rix, H.-W.; Jiang, L.; McGreer, I.; Simcoe, R.; Wang, F.; Yang, J.; Morganson, E.; De Rosa, G.; Greiner, J.; Balokovic, M.; Burgett, W. S.; Cooper, T.; Draper, P. W.; Flewelling, H.; Hodapp, K. W.; Jun, H. D.; Kaiser, N.; Kudritzki, R.-P.; Magnier, E. A.; Metcalfe, N.; Miller, D.; Schindler, J.-T.; Tonry, J. L.; Wainscoat, R. J.; Waters, C.; Yang, Q.

2017-01-01

The photometric follow-up observations were carried out over different observing runs and different instruments. We obtained optical and near-infrared images with the MPG 2.2m/GROND, New Technology Telescope (NTT)/EFOSC2, NTT/SofI, Calar Alto (CAHA) 3.5m/Omega2000, CAHA 2.2m/CAFOS21, MMT/SWIRC), and du Pont/Retrocam; see Table 1 for details of the observations and filters used. A spectroscopic campaign was carried out using several instruments at different telescopes: EFOSC2 at the NTT telescope in La Silla, the Focal Reducer / Low-Dispersion Spectrograph 2 (FORS2) at the Very Large Telescope (VLT), the Folded-Port Infrared Echellette (FIRE) spectrometer and the Low-Dispersion Survey Spectrograph (LDSS3) at the Baade and Clay Telescopes at Las Campanas Observatory, the Low-Resolution Imaging Spectrometer (LRIS) at the Keck I 10m Telescope on Mauna Kea, the Double Spectrograph (DBSP) on the 200 inch (5m) Hale Telescope at Palomar Observatory (P200), the Red-Channel Spectrograph on the 6.5m MMT Telescope, the Cassegrain TWIN Spectrograph at the 3.5m Calar Alto Telescope (CAHA 3.5m), and the Multi-object Double Spectrograph (MODS) and LUCI spectrograph at the Large Binocular Telescope (LBT). The details of the spectroscopic observations of the PS1-discovered quasars are shown in Table 5. (10 data files).

Ignition of Droplet Suspended on a Wire

NASA Technical Reports Server (NTRS)

2003-01-01

The Fiber Supported Droplet Combustion Experiment completing a number of successful burns on STS-94, July 11, 1997, MET:9/17:40 (approximate). The photo shows a droplet of 95% heptane and 5% hexadecane, suspended and positioned by the fiber wire, just as it is being ignited by the glowing coil beneath. Study of the physical properties of burning fuel from this experiment is expected to contribute to more efficient use of fossil fuels and reduction of combustion by-products on Earth. The sequence is from a time-lapse movie (34 seconds condensed to 12 seconds), and clearly shows particles emanating from the droplet during the burn. The droplet shrank to nothing as it was consumed. FSDC-2 studied fundamental phenomena related to liquid fuel droplet combustion in air. Pure fuels and mixtures of fuels were burned as isolated single and dual droplets with and without forced air convection. The FSDC guest investigator was Forman Williams, University of California, San Diego. The experiment was part of the space research investigations conducted during the Microgravity Science Laboratory-1R mission (STS-94, July 1-17 1997). Advanced combustion experiments will be a part of investigations plarned for the International Space Station. (133KB JPEG, 656 x 741 pixels; downlinked video, higher quality not available) The MPG from which this composite was made is available at http://mix.msfc.nasa.gov/ABSTRACTS/MSFC-0300181.html.

DeepBlue epigenomic data server: programmatic data retrieval and analysis of epigenome region sets.

PubMed

Albrecht, Felipe; List, Markus; Bock, Christoph; Lengauer, Thomas

2016-07-08

Large amounts of epigenomic data are generated under the umbrella of the International Human Epigenome Consortium, which aims to establish 1000 reference epigenomes within the next few years. These data have the potential to unravel the complexity of epigenomic regulation. However, their effective use is hindered by the lack of flexible and easy-to-use methods for data retrieval. Extracting region sets of interest is a cumbersome task that involves several manual steps: identifying the relevant experiments, downloading the corresponding data files and filtering the region sets of interest. Here we present the DeepBlue Epigenomic Data Server, which streamlines epigenomic data analysis as well as software development. DeepBlue provides a comprehensive programmatic interface for finding, selecting, filtering, summarizing and downloading region sets. It contains data from four major epigenome projects, namely ENCODE, ROADMAP, BLUEPRINT and DEEP. DeepBlue comes with a user manual, examples and a well-documented application programming interface (API). The latter is accessed via the XML-RPC protocol supported by many programming languages. To demonstrate usage of the API and to enable convenient data retrieval for non-programmers, we offer an optional web interface. DeepBlue can be openly accessed at http://deepblue.mpi-inf.mpg.de. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

A new compact young moving group around V1062 Scorpii

NASA Astrophysics Data System (ADS)

Röser, Siegfried; Schilbach, Elena; Goldman, Bertrand; Henning, Thomas; Moor, Attila; Derekas, Aliz

2018-06-01

Aims: We are searching for new open clusters or moving groups in the solar neighbourhood. Methods: We used the Gaia-TGAS catalogue, cut it into narrow proper motion and parallax slices and searched for significant spatial over-densities of stars in each slice. We then examined stars forming over-densities in optical and near-infrared colour-magnitude diagrams to determine if they are compatible with isochrones of a cluster. Results: We detected a hitherto unknown moving group or cluster in the Upper Centaurus Lupus (UCL) section of the Scorpius-Centaurus OB association (Sco-Cen) at a distance of 175 pc from the Sun. It is a group of 63 comoving stars of less than 10 to about 25 Myr in age. For the brightest stars that are present in the Gaia-TGAS catalogue, the mean difference between kinematic and trigonometric distance moduli is - 0.01 mag with a standard deviation of 0.11 mag. Fainter cluster candidates are found in the HSOY catalogue, where no trigonometric parallaxes are available. For a subset of our candidate stars, we obtained radial velocity measurements at the MPG/ESO 2.2 m telescope in La Silla. Altogether we found 12 members with confirmed radial velocities and parallaxes, 31 with parallaxes or radial velocities, and 20 candidates from the convergent point method. The isochrone masses of our 63 members range from 2.6 to 0.7 M⊙.

Temperature correction and usefulness of ocean bottom pressure data from cabled seafloor observatories around Japan for analyses of tsunamis, ocean tides, and low-frequency geophysical phenomena

NASA Astrophysics Data System (ADS)

Inazu, D.; Hino, R.

2011-11-01

Ocean bottom pressure (OBP) data obtained by cabled seafloor observatories deployed around Japan, are known to be significantly affected by temperature changes. This paper examines the relationship between the OBP and temperature records of six OBP gauges in terms of a regression coefficient and lag at a wide range of frequencies. No significant temperature dependency is recognized in secular variations, while substantial increases, at rates of the order of 1 hPa/year, are commonly evident in the OBP records. Strong temperature dependencies are apparent for periods of hours to days, and we correct the OBP data based on the estimated OBP-temperature relationship. At periods longer than days, the temperature corrections work well for extracting geophysical signals for OBP data at a station off Hokkaido (KPG2), while other corrected data show insufficient signal-to-noise ratios. At a tsunami frequency, the correction can reduce OBP fluctuations, due to rapid temperature changes, by as much as millimeters, and is especially effective for data at a station off Shikoku (MPG2) at which rapid temperature changes most frequently occur. A tidal analysis shows that OBP data at a station off Honshu (TM1), and at KPG2, are useful for studies on the long-term variations of tidal constituents.

A Series of Laminar Jet Flame

NASA Technical Reports Server (NTRS)

2003-01-01

Study of the downlink data from the Laminar Soot Processes (LSP) experiment quickly resulted in discovery of a new mechanism of flame extinction caused by radiation of soot. Scientists found that the flames emit soot sooner than expected. These findings have direct impact on spacecraft fire safety, as well as the theories predicting the formation of soot -- which is a major factor as a pollutant and in the spread of unwanted fires. This sequence, using propane fuel, was taken STS-94, July 4 1997, MET:2/05:30 (approximate). LSP investigated fundamental questions regarding soot, a solid byproduct of the combustion of hydrocarbon fuels. The experiment was performed using a laminar jet diffusion flame, which is created by simply flowing fuel-like ethylene or propane -- through a nozzle and igniting it, much like a butane cigarette lighter. The LSP principal investigator was Gerard Faeth, University of Michigan, Arn Arbor. The experiment was part of the space research investigations conducted during the Microgravity Science Laboratory-1R mission (STS-94, July 1-17 1997). LSP results led to a reflight for extended investigations on the STS-107 research mission in January 2003. Advanced combustion experiments will be a part of investigations planned for the International Space Station. (249KB JPEG, 1350 x 1524 pixels; downlinked video, higher quality not available) The MPG from which this composite was made is available at http://mix.msfc.nasa.gov/ABSTRACTS/MSFC-0300185.html.

Oscillations in the wake of a flare blast wave

NASA Astrophysics Data System (ADS)

Tothova, D.; Innes, D. E.; Stenborg, G.

2011-04-01

Context. Oscillations of coronal loops in the Sun have been reported in both imaging and spectral observations at the onset of flares. Images reveal transverse oscillations, whereas spectra detect line-of-sight velocity or Doppler-shift oscillations. The Doppler-shift oscillations are commonly interpreted as longitudinal modes. Aims: Our aim is to investigate the relationship between loop dynamics and flows seen in TRACE 195 Å images and Doppler shifts observed by SUMER in Si iii 1113.2 Å and FeXIX 1118.1 Å at the time of a C.8-class limb flare and an associated CME. Methods: We carefully co-aligned the sequence of TRACE 195 Å images to structures seen in the SUMER Si iii, CaX, and FeXIX emission lines. Additionally, Hα observations of a lifting prominence associated with the flare and the coronal mass ejection (CME) are available in three bands around 6563.3 Å. They give constraints on the timing and geometry. Results: Large-scale Doppler-shift oscillations in FeXIX and transverse oscillations in intensity images were observed over a large region of the corona after the passage of a wide bright extreme-ultraviolet (EUV) disturbance, which suggests ionization, heating, and acceleration of hot plasma in the wake of a blast wave. The online movie associated to Fig. 2 is available at http://www.aanda.org and at http://www.mps.mpg.de/data/outgoing/tothova/movie.gif

Hexicon 2: automated processing of hydrogen-deuterium exchange mass spectrometry data with improved deuteration distribution estimation.

PubMed

Lindner, Robert; Lou, Xinghua; Reinstein, Jochen; Shoeman, Robert L; Hamprecht, Fred A; Winkler, Andreas

2014-06-01

Hydrogen-deuterium exchange (HDX) experiments analyzed by mass spectrometry (MS) provide information about the dynamics and the solvent accessibility of protein backbone amide hydrogen atoms. Continuous improvement of MS instrumentation has contributed to the increasing popularity of this method; however, comprehensive automated data analysis is only beginning to mature. We present Hexicon 2, an automated pipeline for data analysis and visualization based on the previously published program Hexicon (Lou et al. 2010). Hexicon 2 employs the sensitive NITPICK peak detection algorithm of its predecessor in a divide-and-conquer strategy and adds new features, such as chromatogram alignment and improved peptide sequence assignment. The unique feature of deuteration distribution estimation was retained in Hexicon 2 and improved using an iterative deconvolution algorithm that is robust even to noisy data. In addition, Hexicon 2 provides a data browser that facilitates quality control and provides convenient access to common data visualization tasks. Analysis of a benchmark dataset demonstrates superior performance of Hexicon 2 compared with its predecessor in terms of deuteration centroid recovery and deuteration distribution estimation. Hexicon 2 greatly reduces data analysis time compared with manual analysis, whereas the increased number of peptides provides redundant coverage of the entire protein sequence. Hexicon 2 is a standalone application available free of charge under http://hx2.mpimf-heidelberg.mpg.de.

Accurate indel prediction using paired-end short reads

PubMed Central

2013-01-01

Background One of the major open challenges in next generation sequencing (NGS) is the accurate identification of structural variants such as insertions and deletions (indels). Current methods for indel calling assign scores to different types of evidence or counter-evidence for the presence of an indel, such as the number of split read alignments spanning the boundaries of a deletion candidate or reads that map within a putative deletion. Candidates with a score above a manually defined threshold are then predicted to be true indels. As a consequence, structural variants detected in this manner contain many false positives. Results Here, we present a machine learning based method which is able to discover and distinguish true from false indel candidates in order to reduce the false positive rate. Our method identifies indel candidates using a discriminative classifier based on features of split read alignment profiles and trained on true and false indel candidates that were validated by Sanger sequencing. We demonstrate the usefulness of our method with paired-end Illumina reads from 80 genomes of the first phase of the 1001 Genomes Project ( http://www.1001genomes.org) in Arabidopsis thaliana. Conclusion In this work we show that indel classification is a necessary step to reduce the number of false positive candidates. We demonstrate that missing classification may lead to spurious biological interpretations. The software is available at: http://agkb.is.tuebingen.mpg.de/Forschung/SV-M/. PMID:23442375

MIPS: a database for protein sequences, homology data and yeast genome information.

PubMed Central

Mewes, H W; Albermann, K; Heumann, K; Liebl, S; Pfeiffer, F

1997-01-01

The MIPS group (Martinsried Institute for Protein Sequences) at the Max-Planck-Institute for Biochemistry, Martinsried near Munich, Germany, collects, processes and distributes protein sequence data within the framework of the tripartite association of the PIR-International Protein Sequence Database (,). MIPS contributes nearly 50% of the data input to the PIR-International Protein Sequence Database. The database is distributed on CD-ROM together with PATCHX, an exhaustive supplement of unique, unverified protein sequences from external sources compiled by MIPS. Through its WWW server (http://www.mips.biochem.mpg.de/ ) MIPS permits internet access to sequence databases, homology data and to yeast genome information. (i) Sequence similarity results from the FASTA program () are stored in the FASTA database for all proteins from PIR-International and PATCHX. The database is dynamically maintained and permits instant access to FASTA results. (ii) Starting with FASTA database queries, proteins have been classified into families and superfamilies (PROT-FAM). (iii) The HPT (hashed position tree) data structure () developed at MIPS is a new approach for rapid sequence and pattern searching. (iv) MIPS provides access to the sequence and annotation of the complete yeast genome (), the functional classification of yeast genes (FunCat) and its graphical display, the 'Genome Browser' (). A CD-ROM based on the JAVA programming language providing dynamic interactive access to the yeast genome and the related protein sequences has been compiled and is available on request. PMID:9016498

CoNekT: an open-source framework for comparative genomic and transcriptomic network analyses.

PubMed

Proost, Sebastian; Mutwil, Marek

2018-05-01

The recent accumulation of gene expression data in the form of RNA sequencing creates unprecedented opportunities to study gene regulation and function. Furthermore, comparative analysis of the expression data from multiple species can elucidate which functional gene modules are conserved across species, allowing the study of the evolution of these modules. However, performing such comparative analyses on raw data is not feasible for many biologists. Here, we present CoNekT (Co-expression Network Toolkit), an open source web server, that contains user-friendly tools and interactive visualizations for comparative analyses of gene expression data and co-expression networks. These tools allow analysis and cross-species comparison of (i) gene expression profiles; (ii) co-expression networks; (iii) co-expressed clusters involved in specific biological processes; (iv) tissue-specific gene expression; and (v) expression profiles of gene families. To demonstrate these features, we constructed CoNekT-Plants for green alga, seed plants and flowering plants (Picea abies, Chlamydomonas reinhardtii, Vitis vinifera, Arabidopsis thaliana, Oryza sativa, Zea mays and Solanum lycopersicum) and thus provide a web-tool with the broadest available collection of plant phyla. CoNekT-Plants is freely available from http://conekt.plant.tools, while the CoNekT source code and documentation can be found at https://github.molgen.mpg.de/proost/CoNekT/.

Chapter 11. Fuel Economy: The Case for Market Failure

DOE Office of Scientific and Technical Information (OSTI.GOV)

Greene, David L; German, John; Delucchi, Mark A

2009-01-01

The efficiency of energy using durable goods, from automobiles to home air conditioners, is not only a key determinant of economy-wide energy use but also of greenhouse gas (GHG) emissions, climate change and energy insecurity. Energy analysts have long noted that consumers appear to have high implicit discount rates for future fuel savings when choosing among energy using durable goods (Howarth and Sanstad, 1995). In modeling consumers choices of appliances, the Energy Information Administration (EIA) has used discount rates of 30 percent for heating systems, 69 percent for choice of refrigerator and up to 111 percent for choice of watermore » heater (U.S. DOE/EIA, 1996). Several explanations have been offered for this widespread phenomenon, including asymmetric information, bounded rationality and transaction costs. This chapter argues that uncertainty combined with loss aversion by consumers is sufficient to explain the failure to adopt cost effective energy efficiency improvements in the market for automotive fuel economy, although other market failures appear to be present as well. Understanding how markets for energy efficiency function is crucial to formulating effective energy policies (see Pizer, 2006). Fischer et al., (2004), for example, demonstrated that if consumers fully value the discounted present value of future fuel savings, fuel economy standards are largely redundant and produce small welfare losses. However, if consumers value only the first three years of fuel savings, then fuel economy standards can significantly increase consumer welfare. The nature of any market failure that might be present in the market for energy efficiency would also affect the relative efficacy of energy taxes versus regulatory standards (CBO, 2003). If markets function efficiently, energy taxes would generally be more efficient than regulatory standards in increasing energy efficiency and reducing energy use. If markets are decidedly inefficient, standards would likely be more effective. The chapter explores the roles of uncertainty and loss-aversion in the market for automotive fuel economy. The focus is on the determination of the technical efficiency of the vehicle rather than consumers choices among vehicles. Over the past three decades, changes in the mix of vehicles sold has played little if any role in raising the average fuel economy of new light-duty vehicles from 13 miles per gallon (mpg) in 1975 to 21 mpg today (Heavenrich, 2006). Over that same time period, average vehicle weight is up 2 percent, horsepower is up 60 percent, passenger car interior volume increased by 2 percent and the market share of light trucks grew by 31 percentage points. Historically, at least, increasing light-duty vehicle fuel economy in the United States has been a matter of manufacturers decisions to apply technology to increase the technical efficiency of cars and light trucks. Understanding how efficiently the market determines the technical fuel economy of new vehicles would seem to be critical to formulating effective policies to encourage future fuel economy improvement. The central issue is whether or not the market for fuel economy is economically efficient. Rubenstein (1998) lists the key assumptions of the rational economic decision model. The decision maker must have a clear picture of the choice problem he or she faces. He should be fully aware of the set of alternatives from which to choose and have the skill necessary to make complicated calculations needed to discover the optimal course of action. Finally, the decision maker should have the unlimited ability to calculate and be indifferent to alternatives and choice sets.« less

Planet from another galaxy discovered - Galactic cannibalism brings an exoplanet of extragalactic origin within astronomers' reach

NASA Astrophysics Data System (ADS)

2010-11-01

An exoplanet orbiting a star that entered our Milky Way from another galaxy has been detected by a European team of astronomers using the MPG/ESO 2.2-metre telescope at ESO's La Silla Observatory in Chile. The Jupiter-like planet is particularly unusual, as it is orbiting a star nearing the end of its life and could be about to be engulfed by it, giving tantalising clues about the fate of our own planetary system in the distant future. Over the last 15 years, astronomers have detected nearly 500 planets orbiting stars in our cosmic neighbourhood, but none outside our Milky Way has been confirmed [1]. Now, however, a planet with a minimum mass 1.25 times that of Jupiter [2] has been discovered orbiting a star of extragalactic origin, even though the star now finds itself within our own galaxy. It is part of the so-called Helmi stream [3] - a group of stars that originally belonged to a dwarf galaxy that was devoured by our galaxy, the Milky Way, in an act of galactic cannibalism about six to nine billion years ago. The results are published today in Science Express. "This discovery is very exciting," says Rainer Klement of the Max-Planck-Institut für Astronomie (MPIA), who was responsible for the selection of the target stars for this study. "For the first time, astronomers have detected a planetary system in a stellar stream of extragalactic origin. Because of the great distances involved, there are no confirmed detections of planets in other galaxies. But this cosmic merger has brought an extragalactic planet within our reach." The star is known as HIP 13044, and it lies about 2000 light-years from Earth in the southern constellation of Fornax (the Furnace). The astronomers detected the planet, called HIP 13044 b, by looking for the tiny telltale wobbles of the star caused by the gravitational tug of an orbiting companion. For these precise observations, the team used the high-resolution spectrograph FEROS [4] attached to the 2.2-metre MPG/ESO telescope [5] at ESO's La Silla Observatory in Chile. Adding to its claim to fame, HIP 13044 b is also one of the few exoplanets known to have survived the period when its host star expanded massively after exhausting the hydrogen fuel supply in its core - the red giant phase of stellar evolution. The star has now contracted again and is burning helium in its core. Until now, these so-called horizontal branch stars have remained largely uncharted territory for planet-hunters. "This discovery is part of a study where we are systematically searching for exoplanets that orbit stars nearing the end of their lives," says Johny Setiawan, also from MPIA, who led the research. "This discovery is particularly intriguing when we consider the distant future of our own planetary system, as the Sun is also expected to become a red giant in about five billion years." HIP 13044 b is near to its host star. At the closest point in its elliptical orbit, it is less than one stellar diameter from the surface of the star (or 0.055 times the Sun-Earth distance). It completes an orbit in only 16.2 days. Setiawan and his colleagues hypothesise that the planet's orbit might initially have been much larger, but that it moved inwards during the red giant phase. Any closer-in planets may not have been so lucky. "The star is rotating relatively quickly for an horizontal branch star," says Setiawan. "One explanation is that HIP 13044 swallowed its inner planets during the red giant phase, which would make the star spin more quickly." Although HIP 13044 b has escaped the fate of these inner planets so far, the star will expand again in the next stage of its evolution. HIP 13044 b may therefore be about to be engulfed by the star, meaning that it is doomed after all. This could also foretell the demise of our outer planets - such as Jupiter - when the Sun approaches the end of its life. The star also poses interesting questions about how giant planets form, as it appears to contain very few elements heavier than hydrogen and helium - fewer than any other star known to host planets. "It is a puzzle for the widely accepted model of planet formation to explain how such a star, which contains hardly any heavy elements at all, could have formed a planet. Planets around stars like this must probably form in a different way," adds Setiawan. Notes [1] There have been tentative claims of the detection of extragalactic exoplanets through "gravitational microlensing" events, in which the planet passing in front of an even more distant star leads to a subtle, but detectable "flash". However, this method relies on a singular event - the chance alignment of a distant light source, planetary system and observers on Earth - and no such extragalactic planet detection has been confirmed. [2] Using the radial velocity method, astronomers can only estimate a minimum mass for a planet, as the mass estimate also depends on the tilt of the orbital plane relative to the line of sight, which is unknown. From a statistical point of view, this minimum mass is however often close to the real mass of the planet. [3] Astronomers can identify members of the Helmi stream as they have motions (velocity and orbits) that are rather different from the average Milky Way stars. [4] FEROS stands for Fibre-fed Extended Range Optical Spectrograph. [5] The 2.2-metre telescope has been in operation at La Silla since early 1984 and is on indefinite loan to ESO from the Max-Planck Society (Max Planck Gesellschaft or MPG in German). Telescope time is shared between MPG and ESO observing programmes, while the operation and maintenance of the telescope are ESO's responsibility. More information This research was presented in a paper, "A Giant Planet Around a Metal-poor Star of Extragalactic Origin", by J. Setiawan et al., to appear in Science Express on 18 November 2010. The team is composed of J. Setiawan, R. J. Klement, T. Henning, H.-W. Rix, and B. Rochau (Max-Planck-Institut für Astronomie, Heidelberg, Germany), J. Rodmann (European Space Agency, Noordwijk, the Netherlands), and T. Schulze-Hartung (Max-Planck-Institut für Astronomie, Heidelberg, Germany). ESO, the European Southern Observatory, is the foremost intergovernmental astronomy organisation in Europe and the world's most productive astronomical observatory. It is supported by 14 countries: Austria, Belgium, the Czech Republic, Denmark, France, Finland, Germany, Italy, the Netherlands, Portugal, Spain, Sweden, Switzerland and the United Kingdom. ESO carries out an ambitious programme focused on the design, construction and operation of powerful ground-based observing facilities enabling astronomers to make important scientific discoveries. ESO also plays a leading role in promoting and organising cooperation in astronomical research. ESO operates three unique world-class observing sites in Chile: La Silla, Paranal and Chajnantor. At Paranal, ESO operates the Very Large Telescope, the world's most advanced visible-light astronomical observatory and VISTA, the world's largest survey telescope. ESO is the European partner of a revolutionary astronomical telescope ALMA, the largest astronomical project in existence. ESO is currently planning a 42-metre European Extremely Large optical/near-infrared Telescope, the E-ELT, which will become "the world's biggest eye on the sky".

Model predictive control of a lean-burn gasoline engine coupled with a passive selective catalytic reduction system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Pingen; Lin, Qinghua; Prikhodko, Vitaly Y.

Lean-burn gasoline engines have demonstrated 10–20% engine efficiency gain over stoichiometric engines and are widely considered as a promising technology for meeting the 54.5 miles-per-gallon (mpg) Corporate Average Fuel Economy standard by 2025. Nevertheless, NOx emissions control for lean-burn gasoline for meeting the stringent EPA Tier 3 emission standards has been one of the main challenges towards the commercialization of highly-efficient lean-burn gasoline engines in the United States. Passive selective catalytic reduction (SCR) systems, which consist of a three-way catalyst and SCR, have demonstrated great potentials of effectively reducing NOx emissions for lean gasoline engines but may cause significant fuelmore » penalty due to ammonia generation via rich engine combustion. The purpose of this study is to develop a model-predictive control (MPC) scheme for a lean-burn gasoline engine coupled with a passive SCR system to minimize the fuel penalty associated with passive SCR operation while satisfying stringent NOx and NH3 emissions requirements. Simulation results demonstrate that the MPC-based control can reduce the fuel penalty by 47.7% in a simulated US06 cycle and 32.0% in a simulated UDDS cycle, compared to the baseline control, while achieving over 96% deNOx efficiency and less than 15 ppm tailpipe ammonia slip. The proposed MPC control can potentially enable high engine efficiency gain for highly-efficient lean-burn gasoline engine while meeting the stringent EPA Tier 3 emission standards.« less

Predicting Individual Fuel Economy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lin, Zhenhong; Greene, David L

2011-01-01

To make informed decisions about travel and vehicle purchase, consumers need unbiased and accurate information of the fuel economy they will actually obtain. In the past, the EPA fuel economy estimates based on its 1984 rules have been widely criticized for overestimating on-road fuel economy. In 2008, EPA adopted a new estimation rule. This study compares the usefulness of the EPA's 1984 and 2008 estimates based on their prediction bias and accuracy and attempts to improve the prediction of on-road fuel economies based on consumer and vehicle attributes. We examine the usefulness of the EPA fuel economy estimates using amore » large sample of self-reported on-road fuel economy data and develop an Individualized Model for more accurately predicting an individual driver's on-road fuel economy based on easily determined vehicle and driver attributes. Accuracy rather than bias appears to have limited the usefulness of the EPA 1984 estimates in predicting on-road MPG. The EPA 2008 estimates appear to be equally inaccurate and substantially more biased relative to the self-reported data. Furthermore, the 2008 estimates exhibit an underestimation bias that increases with increasing fuel economy, suggesting that the new numbers will tend to underestimate the real-world benefits of fuel economy and emissions standards. By including several simple driver and vehicle attributes, the Individualized Model reduces the unexplained variance by over 55% and the standard error by 33% based on an independent test sample. The additional explanatory variables can be easily provided by the individuals.« less

Chlorobenzene induces oxidative stress in human lung epithelial cells in vitro

DOE Office of Scientific and Technical Information (OSTI.GOV)

Feltens, Ralph, E-mail: ralph.feltens@ufz.d; UFZ- Helmholtz Centre for Environmental Research, Department of Proteomics, Permoserstrasse 15, D-04318 Leipzig; Moegel, Iljana, E-mail: iljana.moegel@ufz.d

Chlorobenzene is a volatile organic compound (VOC) that is widely used as a solvent, degreasing agent and chemical intermediate in many industrial settings. Occupational studies have shown that acute and chronic exposure to chlorobenzene can cause irritation of the mucosa of the upper respiratory tract and eyes. Using in vitro assays, we have shown in a previous study that human bronchial epithelial cells release inflammatory mediators such as the cytokine monocyte chemoattractant protein-1 (MCP-1) in response to chlorobenzene. This response is mediated through the NF-kappaB signaling pathway. Here, we investigated the effects of monochlorobenzene on human lung cells, with emphasismore » on potential alterations of the redox equilibrium to clarify whether the chlorobenzene-induced inflammatory response in lung epithelial cells is caused via an oxidative stress-dependent mechanism. We found that expression of cellular markers for oxidative stress, such as heme oxygenase 1 (HO-1), glutathione S-transferase pi1 (GSTP1), superoxide dismutase 1 (SOD1), prostaglandin-endoperoxide synthase 2 (PTGS2) and dual specificity phosphatase 1 (DUSP1), were elevated in the presence of monochlorobenzene. Likewise, intracellular reactive oxygen species (ROS) were increased in response to exposure. However, in the presence of the antioxidants N-(2-mercaptopropionyl)-glycine (MPG) or bucillamine, chlorobenzene-induced upregulation of marker proteins and release of the inflammatory mediator MCP-1 are suppressed. These results complement our previous findings and point to an oxidative stress-mediated inflammatory response following chlorobenzene exposure.« less

Alchemical Free Energy Calculations for Nucleotide Mutations in Protein-DNA Complexes.

PubMed

Gapsys, Vytautas; de Groot, Bert L

2017-12-12

Nucleotide-sequence-dependent interactions between proteins and DNA are responsible for a wide range of gene regulatory functions. Accurate and generalizable methods to evaluate the strength of protein-DNA binding have long been sought. While numerous computational approaches have been developed, most of them require fitting parameters to experimental data to a certain degree, e.g., machine learning algorithms or knowledge-based statistical potentials. Molecular-dynamics-based free energy calculations offer a robust, system-independent, first-principles-based method to calculate free energy differences upon nucleotide mutation. We present an automated procedure to set up alchemical MD-based calculations to evaluate free energy changes occurring as the result of a nucleotide mutation in DNA. We used these methods to perform a large-scale mutation scan comprising 397 nucleotide mutation cases in 16 protein-DNA complexes. The obtained prediction accuracy reaches 5.6 kJ/mol average unsigned deviation from experiment with a correlation coefficient of 0.57 with respect to the experimentally measured free energies. Overall, the first-principles-based approach performed on par with the molecular modeling approaches Rosetta and FoldX. Subsequently, we utilized the MD-based free energy calculations to construct protein-DNA binding profiles for the zinc finger protein Zif268. The calculation results compare remarkably well with the experimentally determined binding profiles. The software automating the structure and topology setup for alchemical calculations is a part of the pmx package; the utilities have also been made available online at http://pmx.mpibpc.mpg.de/dna_webserver.html .

Automatic Prediction of Protein 3D Structures by Probabilistic Multi-template Homology Modeling.

PubMed

Meier, Armin; Söding, Johannes

2015-10-01

Homology modeling predicts the 3D structure of a query protein based on the sequence alignment with one or more template proteins of known structure. Its great importance for biological research is owed to its speed, simplicity, reliability and wide applicability, covering more than half of the residues in protein sequence space. Although multiple templates have been shown to generally increase model quality over single templates, the information from multiple templates has so far been combined using empirically motivated, heuristic approaches. We present here a rigorous statistical framework for multi-template homology modeling. First, we find that the query proteins' atomic distance restraints can be accurately described by two-component Gaussian mixtures. This insight allowed us to apply the standard laws of probability theory to combine restraints from multiple templates. Second, we derive theoretically optimal weights to correct for the redundancy among related templates. Third, a heuristic template selection strategy is proposed. We improve the average GDT-ha model quality score by 11% over single template modeling and by 6.5% over a conventional multi-template approach on a set of 1000 query proteins. Robustness with respect to wrong constraints is likewise improved. We have integrated our multi-template modeling approach with the popular MODELLER homology modeling software in our free HHpred server http://toolkit.tuebingen.mpg.de/hhpred and also offer open source software for running MODELLER with the new restraints at https://bitbucket.org/soedinglab/hh-suite.

Action of Bacopa monnieri to antagonize cisplatin-induced emesis in Suncus murinus (house musk shrew).

PubMed

Ullah, Ihsan; Subhan, Fazal; Lu, Zengbing; Chan, Sze Wa; Rudd, John A

2017-04-01

Bacopa monnieri (BM, family Scrophulariaceae) is used in several traditional systems of medicine for the management of epilepsy, depression, neuropathic pain, sleep disorders and memory deficits. The present study investigated the potential of BM methanol (BM-MetFr) and BM n-butanol fractions (BM-ButFr) to reduce chemotherapy-induced emesis in Suncus murinus (house musk shrew). Cisplatin (30 mg/kg, i.p.) reliably induced retching and/or vomiting over a 2 day period. BM-MetFr (10-40 mg/kg, s.c.) and BM-ButFr (5-20 mg/kg, s.c.) antagonized the retching and/or vomiting response by ∼59.4% (p < 0.05) and 78.9% (p < 0.05), respectively, while the 5-HT 3 receptor antagonist, palonosetron (0.5 mg/kg, s.c.), reduced the response by ∼71% (p < 0.05). The free radical scavenger/antioxidant, N-(2-mercaptopropionyl)-glycine (30-300 mg/kg, s.c.) reduced the retching and/or vomiting response occurring on day one non-significantly by 44% (p > 0.05). In conclusion, the n-butanol fractions of BM have anti-emetic activity comparable with palonosetron and MPG. BM may be useful alone or in combination with other anti-emetic drugs for the treatment of chemotherapy-induced emesis in man. Copyright © 2017 The Authors. Production and hosting by Elsevier B.V. All rights reserved.

["A decision meaning a new foundation...": from the Kaiser Wilhelm Institute for Anthropology, Human Genetics and Eugenics to the Max Planck Institute for Molecular Genetics].

PubMed

Sachse, Carola

2011-01-01

The Max Planck Institute for Molecular Genetics (MPIMG) in Berlin-Dahlem dates its establishment to 1964. Its homepage makes no mention of its predecessor institutes, the Kaiser Wilhelm Institute for Anthropology, Human Genetics and Eugenics (KWIA) and the subsequent MPI for Comparative Genetics and Hereditary Pathology (MPIVEE). This article traces the two critical phases of transition regarding the constellations of academic staff, institutional and epistemic ruptures and continuities specific to the era. Only one of the five department heads from the final war years, Hans Nachtsheim, remained a researcher within the Max Planck Society (MPG); he nevertheless continued to advocate the pre-war and wartime eugenic agenda in the life sciences and social policy. The generational change of 1959/60 became a massive struggle within the institute, in which microbial genetics (with Fritz Kaudewitz) was pitted against human genetics (with Friedrich Vogel) and managed to establish itself after a fresh change in personnel in 1964/65. For the Dahlem institute, this involved a far-reaching reorientation of its research, but for the genetically oriented life sciences in the Max Planck Society as a whole it only meant that molecular biology, which was already being pursued in the West German institutes, gained an additional facility. With this realignment of research traditions, the Society was able to draw a line under the Nazi past without having to address it head-on.

Series of Two Droplets on Fiber Approaching Ignition

NASA Technical Reports Server (NTRS)

2003-01-01

The Fiber-Supported Droplet Combustion (FSDC) uses two droplets positioned on the fiber wire, instead of the usual one. Two droplets more closely simulates the environment in engines, which ignite many fuel droplets at once. The behavior of the burning was also unexpected -- the droplets moved together after ignition, generating quite a bit of data for understanding the interaction of fuel droplets while they burn. Because FSDC is backlit (the bright glow behind the drops), you carnot see the glow of the droplets while they burn -- instead, you see them shrink! The small blobs left on the wire after the burn are the beads used to center the fuel droplet on the wire. This image was taken on STS-94, July 12, 1997, MET:10/19:13 (approximate). FSDC-2 studied fundamental phenomena related to liquid fuel droplet combustion in air. Pure fuels and mixtures of fuels were burned as isolated single and dual droplets with and without forced air convection. The FSDC guest investigator was Forman Williams, University of California, San Diego. The experiment was part of the space research investigations conducted during the Microgravity Science Laboratory-1R mission (STS-94, July 1-17 1997). Advanced combustion experiments will be a part of investigations planned for the International Space Station. (251KB JPEG, 1350 x 1523 pixels; downlinked video, higher quality not available) The MPG from which this composite was made is available at http://mix.msfc.nasa.gov/ABSTRACTS/MSFC-0300179.html

The 13Carbon footprint of B[e] supergiants

NASA Astrophysics Data System (ADS)

Liermann, A.; Kraus, M.; Schnurr, O.; Fernandes, M. Borges

2010-10-01

We report on the first detection of 13C enhancement in two B[e] supergiants (B[e]SGs) in the Large Magellanic Cloud. Stellar evolution models predict the surface abundance in 13C to strongly increase during main-sequence and post-main-sequence evolution of massive stars. However, direct identification of chemically processed material on the surface of B[e]SGs is hampered by their dense, disc-forming winds, hiding the stars. Recent theoretical computations predict the detectability of enhanced 13C via the molecular emission in 13CO arising in the circumstellar discs of B[e]SGs. To test this potential method and to unambiguously identify a post-main-sequence B[e] SG by its 13CO emission, we have obtained high-quality K-band spectra of two known B[e] SGs in the Large Magellanic Cloud, using the Very Large Telescope's Spectrograph for INtegral Field Observation in the Near-Infrared (VLT/SINFONI). Both stars clearly show the 13CO band emission, whose strength implies a strong enhancement of 13C, in agreement with theoretical predictions. This first ever direct confirmation of the evolved nature of B[e]SGs thus paves the way to the first identification of a Galactic B[e]SG. Based on observations collected with the ESO VLT Paranal Observatory under programme 384.D-1078(A). E-mail: liermann@mpifr-bonn.mpg.de (AL); kraus@sunstel.asu.cas.cz (MK); oschnurr@aip.de (OS); borges@on.br (MBF)

Series of Laminar Soot Processes Experiment

NASA Technical Reports Server (NTRS)

2003-01-01

Study of the downlink data from the Laminar Soot Processes (LSP) experiment quickly resulted in discovery of a new mechanism of flame extinction caused by radiation of soot. Scientists found that the flames emit soot sooner than expected. These findings have direct impact on spacecraft fire safety, as well as the theories predicting the formation of soot -- which is a major factor as a pollutant and in the spread of unwanted fires. This sequence was taken July 15, 1997, MET:14/10:34 (approximate) and shows the ignition and extinction of this flame. LSP investigated fundamental questions regarding soot, a solid byproduct of the combustion of hydrocarbon fuels. The experiment was performed using a laminar jet diffusion flame, which is created by simply flowing fuel -- like ethylene or propane -- through a nozzle and igniting it, much like a butane cigarette lighter. The LSP principal investigator was Gerard Faeth, University of Michigan, Arn Arbor. The experiment was part of the space research investigations conducted during the Microgravity Science Laboratory-1R mission (STS-94, July 1-17 1997). LSP results led to a reflight for extended investigations on the STS-107 research mission in January 2003. Advanced combustion experiments will be a part of investigations planned for the International Space Station. (189KB JPEG, 1350 x 1517 pixels; downlinked video, higher quality not available) The MPG from which this composite was made is available at http://mix.msfc.nasa.gov/ABSTRACTS/MSFC-0300183.html.

New Methodology for Estimating Fuel Economy by Vehicle Class

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chin, Shih-Miao; Dabbs, Kathryn; Hwang, Ho-Ling

2011-01-01

Office of Highway Policy Information to develop a new methodology to generate annual estimates of average fuel efficiency and number of motor vehicles registered by vehicle class for Table VM-1 of the Highway Statistics annual publication. This paper describes the new methodology developed under this effort and compares the results of the existing manual method and the new systematic approach. The methodology developed under this study takes a two-step approach. First, the preliminary fuel efficiency rates are estimated based on vehicle stock models for different classes of vehicles. Then, a reconciliation model is used to adjust the initial fuel consumptionmore » rates from the vehicle stock models and match the VMT information for each vehicle class and the reported total fuel consumption. This reconciliation model utilizes a systematic approach that produces documentable and reproducible results. The basic framework utilizes a mathematical programming formulation to minimize the deviations between the fuel economy estimates published in the previous year s Highway Statistics and the results from the vehicle stock models, subject to the constraint that fuel consumptions for different vehicle classes must sum to the total fuel consumption estimate published in Table MF-21 of the current year Highway Statistics. The results generated from this new approach provide a smoother time series for the fuel economies by vehicle class. It also utilizes the most up-to-date and best available data with sound econometric models to generate MPG estimates by vehicle class.« less

[Medical innovations in the area of conflict between certification and allowance].

PubMed

Möller, B; Stockheim, M; Kraus, T; Weber, A

2010-10-01

The medical technology industry is one of the most innovative industries in Germany. Once a medical product is developed, it will be certificated according to European harmonized guidelines and norms. The respective national regulations in Germany are stipulated in the Medical Devices Act (MPG). Part of the certification process is a clinical assessment with the aim to prove that the medical device complies with the so-called essential requirements concerning safety, performance and suitability for the intended use as defined by the manufacturer. A clinical trial may be necessary to establish compliance with these requirements. During this clinical trial the devices are being assessed in patients according to strict requirements by law. The main criticism by the funding agencies is that these trials do not sufficiently apply methods of evidence-based medicine. Thereby they are not useful for assessing the medical benefit of the devices. The manufacturers' counter-argument is that the products are bearing the CE mark, that they comply with the uniform European standards and that their quality therefore has been appropriately assessed. This discussion relates to the question about payment for the products, as according to the Fifth Social Act the funding agencies are only permitted to finance products with a scientifically proven medical benefit. The present article discusses both positions in the context of national and international legislation for the certification of medical devices and presents possible solutions. © Georg Thieme Verlag KG Stuttgart · New York.

Orthodontic soldering techniques: aspects of quality assurance in the dental laboratory.

PubMed

Heidemann, Jutta; Witt, Emil; Feeg, Martin; Werz, Rainer; Pieger, Klaus

2002-07-01

In Germany, the dental technician is required by the Medical Products Act (MPG) to produce workpieces of high safety and quality and to document these properties. Soldering continues to be the prevailing joining technique in the dental laboratory, although problems arise from the susceptibility to corrosion and the low strength of soldered joints. This study aimed to reveal sources of defects in dental laboratory workpieces in order to achieve optimization in terms of quality assurance. The joints were produced by various dental technicians using three different soldering techniques. These joining techniques were investigated for their quality and their corrosion properties during immersion in ferric chloride, orthodontic appliance cleanser, and artificial saliva. Observance of the soldering instructions by the dental technicians was checked. Corrosion attack was confirmed by scanning electron microscopy and by measuring the ion concentrations of copper, silver and zinc in the corrosive agents, using atomic emission spectroscopy with stimulation by inductively coupled plasma (ICP-AES analysis). Incomplete filling of the soldering gap, porosities resulting from the production process, poor corrosion properties, and in particular a high variability of the measured values point to insufficient reliability of two soldering techniques. Variations in quality were also detected among the technicians' modes of operation. The analyses confirm the need for quality assurance of soldering techniques and for increased support for alternative joining techniques such as laser welding in the future. The results of the studies on laser welding are presented in a separate publication.

Photoassisted oxygen reduction reaction on mpg-C3N4: The effects of elements doping on the performance of ORR

NASA Astrophysics Data System (ADS)

He, Qiuchen; Zhou, Feng; Zhan, Su; Huang, Naibao; Tian, Yu

2018-02-01

The oxygen reduction reaction (ORR) is a crux step in the fuel cells, which is limited to the catalysts. Low-cost nonmetal inorganic catalysts were considered to be the best prospect that may replace platinum. Graphitic carbon nitride (g-C3N4), which has wide prospect in photocatalysis, was found with the activity of ORR. In calculation work, we used the elements of the VIA family (O, S, and Se) to dope g-C3N4 and investigated the electronic properties and the ability of O2 adsorption in details based on the first principle. The result suggested that the performance of ORR of g-C3N4 may be enhanced by O doping, which can uplift the Fermi level of g-C3N4 and weaken the OH- absorption ability to enhance the O2 adsorption ability. After that, we synthetised O/g-C3N4 and S/g-C3N4 to test their ORR performance. According to the result, O doping can significantly enhance the performance of ORR of g-C3N4 which correspond with the calculation result. Then, the photo-assistant method was used to further enhance the ORR of g-C3N4 which was caused by the transition of the photo-induced electrons of g-C3N4 from VB to CB.

Alkylation sensitivity screens reveal a conserved cross-species functionome

PubMed Central

Svilar, David; Dyavaiah, Madhu; Brown, Ashley R.; Tang, Jiang-bo; Li, Jianfeng; McDonald, Peter R.; Shun, Tong Ying; Braganza, Andrea; Wang, Xiao-hong; Maniar, Salony; St Croix, Claudette M.; Lazo, John S.; Pollack, Ian F.; Begley, Thomas J.; Sobol, Robert W.

2013-01-01

To identify genes that contribute to chemotherapy resistance in glioblastoma, we conducted a synthetic lethal screen in a chemotherapy-resistant glioblastoma derived cell line with the clinical alkylator temozolomide (TMZ) and an siRNA library tailored towards “druggable” targets. Select DNA repair genes in the screen were validated independently, confirming the DNA glycosylases UNG and MYH as well as MPG to be involved in the response to high dose TMZ. The involvement of UNG and MYH is likely the result of a TMZ-induced burst of reactive oxygen species. We then compared the human TMZ sensitizing genes identified in our screen with those previously identified from alkylator screens conducted in E. coli and S. cerevisiae. The conserved biological processes across all three species composes an Alkylation Functionome that includes many novel proteins not previously thought to impact alkylator resistance. This high-throughput screen, validation and cross-species analysis was then followed by a mechanistic analysis of two essential nodes: base excision repair (BER) DNA glycosylases (UNG, human and mag1, S. cerevisiae) and protein modification systems, including UBE3B and ICMT in human cells or pby1, lip22, stp22 and aim22 in S. cerevisiae. The conserved processes of BER and protein modification were dual targeted and yielded additive sensitization to alkylators in S. cerevisiae. In contrast, dual targeting of BER and protein modification genes in human cells did not increase sensitivity, suggesting an epistatic relationship. Importantly, these studies provide potential new targets to overcome alkylating agent resistance. PMID:23038810

Predicting Light-Duty Vehicle Fuel Economy as a Function of Highway Speed

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thomas, John; Hwang, Ho-Ling; West, Brian

2013-04-08

The www.fueleconomy.gov website offers information such as window label fuel economy for city, highway, and combined driving for all U.S.-legal light-duty vehicles from 1984 to the present. The site is jointly maintained by the U.S. Department of Energy and the U.S. Environmental Protection Agency (EPA), and also offers a considerable amount of consumer information and advice pertaining to vehicle fuel economy and energy related issues. Included with advice pertaining to driving styles and habits is information concerning the trend that as highway cruising speed is increased, fuel economy will degrade. An effort was undertaken to quantify this conventional wisdom throughmore » analysis of dynamometer testing results for 74 vehicles at steady state speeds from 50 to 80 mph. Using this experimental data, several simple models were developed to predict individual vehicle fuel economy and its rate of change over the 50-80 mph speed range interval. The models presented require a minimal number of vehicle attributes. The simplest model requires only the EPA window label highway mpg value (based on the EPA specified estimation method for 2008 and beyond). The most complex of these simple model uses vehicle coast-down test coefficients (from testing prescribed by SAE Standard J2263) known as the vehicle Target Coefficients, and the raw fuel economy result from the federal highway test. Statistical comparisons of these models and discussions of their expected usefulness and limitations are offered.« less

Surface Ice and Tholins on the Extreme Centaur 2012 DR30

NASA Astrophysics Data System (ADS)

Szabó, Gy. M.; Kiss, Cs.; Pinilla-Alonso, N.; Hsiao, E. Y.; Marion, G. H.; Györgyey Ries, J.; Duffard, R.; Alvarez-Candal, A.; Sárneczky, K.; Vinkó, J.

2018-04-01

2012 {DR}}30 is one of the known solar system objects with the largest aphelion distance, exceeding 2200 au, on a high inclination orbit (i = 78°). It has been recognized to be either a borderline representative of high inclination, high perihelion distance (HiHq) objects, or even a new class of bodies, similar to HiHq objects for orbit but with an aphelion in the inner Oort Cloud. Here, we present photometry using long-term data from 2000 to 2013 taken by the SDSS sky survey, ESO MPG 2.2 m and McDonald 2.1 m telescopes, and a visual+near-infrared spectrum taken with the Southern Astrophysical Research Telescope and Magellan telescopes, providing insights into the surface composition of this body. Our best fit suggests that the surface contains 60% of complex organics (30% of Titan and 30% of Triton tholins) with a significant fraction of ice (30%, including pure water and water with inclusions of complex organics) and 10% silicates. The models also suggest a low limit of amorphous carbons, and hence the fragmentation of long-chained complex organics is slower than their rate of generation. 2012 {DR}}30 just recently passed the perihelion, and the long-term photometry of the object suggested ambiguous signs of activity, since the long-term photometric scatter well exceeded the supposed measurement errors and the expected brightness variation related to rotation. Photometric colors put 2012 {DR}}30 exactly between dark neutral and red objects, thus it either can be in a transition phase between the two classes or have differing surface properties from these populated classes.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Evans, C. J.; Hainich, R.; Oskinova, L. M.

Sk 183 is the visually brightest star in the N90 nebula, a young star-forming region in the Wing of the Small Magellanic Cloud (SMC). We present new optical spectroscopy from the Very Large Telescope which reveals Sk 183 to be one of the most massive O-type stars in the SMC. Classified as an O3-type dwarf on the basis of its nitrogen spectrum, the star also displays broadened He I absorption, which suggests a later type. We propose that Sk 183 has a composite spectrum and that it is similar to another star in the SMC, MPG 324. This brings themore » number of rare O2- and O3-type stars known in the whole of the SMC to a mere four. We estimate physical parameters for Sk 183 from analysis of its spectrum. For a single-star model, we estimate an effective temperature of 46 {+-} 2 kK, a low mass-loss rate of {approx}10{sup -7} M{sub Sun} yr{sup -1}, and a spectroscopic mass of 46{sup +9}{sub -8} M{sub Sun} (for an adopted distance modulus of 18.7 mag to the young population in the SMC Wing). An illustrative binary model requires a slightly hotter temperature ({approx}47.5 kK) for the primary component. In either scenario, Sk 183 is the earliest-type star known in N90 and will therefore be the dominant source of hydrogen-ionizing photons. This suggests Sk 183 is the primary influence on the star formation along the inner edge of the nebula.« less

Is a scaling factor required to obtain closure between measured and modelled O4 absorptions? - A case study for two days during the MADCAT campaign

NASA Astrophysics Data System (ADS)

Wagner, Thomas

2017-04-01

Measurements of the oxygen dimer O4 are often used in remote sensing applications to infer information on the atmospheric light path distribution. Such information is interesting in itself, but can also be used to retrieve properties of clouds and aerosols, e.g. from ground based Multi-AXis-Differential Optical Absorption Spectroscopy (MAX-DOAS) observations. In recent years, a scaling factor (between about 0.7 and 1) was applied by several groups to the retrieved O4 slant column densities in order to obtain meaningful aerosol profiles from MAX-DOAS observations. However, other groups did not report the need for such a scaling factor. Up to now, this discrepancy is neither understood nor resolved. Here we compare measured and modelled O4 slant column densities for two days during the MADCAT campaign (http://joseba.mpch-mainz.mpg.de/mad_cat.htm). Clouds were mostly absent during both days, and the aerosol profiles are constrained by simultaneous sun photometer and ceilometer measurements. One important difference between both days is the amount of aerosol in the lowest atmospheric layer. Our comparison study addresses several important steps of the O4 data analysis, such as the spectral retrieval and the radiative transfer simulations. We also investigate the effects of temperature and pressure variations on the calculation of the O4 vertical column density. Preliminary results are are not conclusive but indicate that a scaling factor is needed to bring measurements and simulations into agreement at least for one of the two selected days.

Detection of glycolaldehyde toward the solar-type protostar NGC 1333 IRAS2A

NASA Astrophysics Data System (ADS)

Coutens, A.; Persson, M. V.; Jørgensen, J. K.; Wampfler, S. F.; Lykke, J. M.

2015-04-01

Glycolaldehyde is a key molecule in the formation of biologically relevant molecules such as ribose. We report its detection with the Plateau de Bure interferometer toward the Class 0 young stellar object NGC 1333 IRAS2A, which is only the second solar-type protostar for which this prebiotic molecule is detected. Local thermodynamic equilibrium analyses of glycolaldehyde, ethylene glycol (the reduced alcohol of glycolaldehyde), and methyl formate (the most abundant isomer of glycolaldehyde) were carried out. The relative abundance of ethylene glycol to glycolaldehyde is found to be ~5 - higher than in the Class 0 source IRAS 16293-2422 (~1), but similar to the lower limits derived in comets (≥3-6). The different ethylene glycol-to-glycolaldehyde ratios in the two protostars might be related to different CH3OH:CO compositions of the icy grain mantles. In particular, a more efficient hydrogenation on the grains in NGC 1333 IRAS2A would favor the formation of both methanol and ethylene glycol. In conclusion, it is possible that like NGC 1333 IRAS2A, other low-mass protostars show high ethylene glycol-to-glycolaldehyde abundance ratios. The cometary ratios might consequently be inherited from earlier stages of star formation if the young Sun experienced conditions similar to NGC 1333 IRAS2A. Based on observations carried out with the IRAM Plateau de Bure Interferometer. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain).Figures 3-4 and Table 1 are available in electronic form at http://www.aanda.org

A Rare Early-type Star Revealed in the Wing of the Small Magellanic Cloud

NASA Astrophysics Data System (ADS)

Evans, C. J.; Hainich, R.; Oskinova, L. M.; Gallagher, J. S., III; Chu, Y.-H.; Gruendl, R. A.; Hamann, W.-R.; Hénault-Brunet, V.; Todt, H.

2012-07-01

Sk 183 is the visually brightest star in the N90 nebula, a young star-forming region in the Wing of the Small Magellanic Cloud (SMC). We present new optical spectroscopy from the Very Large Telescope which reveals Sk 183 to be one of the most massive O-type stars in the SMC. Classified as an O3-type dwarf on the basis of its nitrogen spectrum, the star also displays broadened He I absorption, which suggests a later type. We propose that Sk 183 has a composite spectrum and that it is similar to another star in the SMC, MPG 324. This brings the number of rare O2- and O3-type stars known in the whole of the SMC to a mere four. We estimate physical parameters for Sk 183 from analysis of its spectrum. For a single-star model, we estimate an effective temperature of 46 ± 2 kK, a low mass-loss rate of ~10-7 M ⊙ yr-1, and a spectroscopic mass of 46+9 -8 M ⊙ (for an adopted distance modulus of 18.7 mag to the young population in the SMC Wing). An illustrative binary model requires a slightly hotter temperature (~47.5 kK) for the primary component. In either scenario, Sk 183 is the earliest-type star known in N90 and will therefore be the dominant source of hydrogen-ionizing photons. This suggests Sk 183 is the primary influence on the star formation along the inner edge of the nebula.

BL Lacertae Objects Beyond Redshift 1.3 - UV-to-NIR Photometry and Photometric Redshift for Fermi/LAT Blazars

NASA Technical Reports Server (NTRS)

Rau, A.; Schady, P.; Greiner, J.; Salvato, M.; Ajello, M.; Bottacini, E.; Gehrels, N.; Afonso, P. M. J.; Elliott, J.; Filgas, R.;

Ionized and Molecular Gas Kinematics in a z = 1.4 Star-forming Galaxy

NASA Astrophysics Data System (ADS)

Übler, H.; Genzel, R.; Tacconi, L. J.; Förster Schreiber, N. M.; Neri, R.; Contursi, A.; Belli, S.; Nelson, E. J.; Lang, P.; Shimizu, T. T.; Davies, R.; Herrera-Camus, R.; Lutz, D.; Plewa, P. M.; Price, S. H.; Schuster, K.; Sternberg, A.; Tadaki, K.; Wisnioski, E.; Wuyts, S.

2018-02-01

We present deep observations of a z = 1.4 massive, star-forming galaxy (SFG) in molecular and ionized gas at comparable spatial resolution (CO 3–2, NOrthern Extended Millimeter Array (NOEMA); Hα, Large Binocular Telescope (LBT)). The kinematic tracers agree well, indicating that both gas phases are subject to the same gravitational potential and physical processes affecting the gas dynamics. We combine the one-dimensional velocity and velocity dispersion profiles in CO and Hα to forward-model the galaxy in a Bayesian framework, combining a thick exponential disk, a bulge, and a dark matter halo. We determine the dynamical support due to baryons and dark matter, and find a dark matter fraction within one effective radius of {f}DM}(≤slant {R}e)={0.18}-0.04+0.06. Our result strengthens the evidence for strong baryon-dominance on galactic scales of massive z ∼ 1–3 SFGs recently found based on ionized gas kinematics alone. Based on observations carried out with the IRAM Interferometer NOEMA. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain). Based on observations carried out with the LBT. The LBT is an international collaboration among institutions in the United States, Italy, and Germany. LBT Corporation partners are: LBT Beteiligungsgesellschaft, Germany, representing the Max-Planck Society, The Leibniz Institute for Astrophysics Potsdam, and Heidelberg University; The University of Arizona on behalf of the Arizona Board of Regents; Istituto Nazionale di Astrofisica, Italy; The Ohio State University, and The Research Corporation, on behalf of The University of Notre Dame, University of Minnesota and University of Virginia.

An application programming interface for CellNetAnalyzer.

PubMed

Klamt, Steffen; von Kamp, Axel

2011-08-01

CellNetAnalyzer (CNA) is a MATLAB toolbox providing computational methods for studying structure and function of metabolic and cellular signaling networks. In order to allow non-experts to use these methods easily, CNA provides GUI-based interactive network maps as a means of parameter input and result visualization. However, with the availability of high-throughput data, there is a need to make CNA's functionality also accessible in batch mode for automatic data processing. Furthermore, as some algorithms of CNA are of general relevance for network analysis it would be desirable if they could be called as sub-routines by other applications. For this purpose, we developed an API (application programming interface) for CNA allowing users (i) to access the content of network models in CNA, (ii) to use CNA's network analysis capabilities independent of the GUI, and (iii) to interact with the GUI to facilitate the development of graphical plugins. Here we describe the organization of network projects in CNA and the application of the new API functions to these projects. This includes the creation of network projects from scratch, loading and saving of projects and scenarios, and the application of the actual analysis methods. Furthermore, API functions for the import/export of metabolic models in SBML format and for accessing the GUI are described. Lastly, two example applications demonstrate the use and versatile applicability of CNA's API. CNA is freely available for academic use and can be downloaded from http://www.mpi-magdeburg.mpg.de/projects/cna/cna.html. Copyright © 2011 Elsevier Ireland Ltd. All rights reserved.

Estimates of Active Region Area Coverage through Simultaneous Measurements of the He i λλ 5876 and 10830 Lines

DOE Office of Scientific and Technical Information (OSTI.GOV)

Andretta, Vincenzo; Covino, Elvira; Giampapa, Mark S.

2017-04-20

Simultaneous, high-quality measurements of the neutral helium triplet features at 5876 Å and 10830 Å in a sample of solar-type stars are presented. The observations were made with ESO telescopes at the La Silla Paranal Observatory under program ID 088.D-0028(A) and MPG Utility Run for Fiber Extended-range Optical Spectrograph 088.A-9029(A). The equivalent widths of these features combined with chromospheric models are utilized to infer the fractional area coverage, or filling factor, of magnetic regions outside of spots. We find that the majority of the sample is characterized by filling factors less than unity. However, discrepancies occur among the coolest K-typemore » and the warmest and most rapidly rotating F-type dwarf stars. We discuss these apparently anomalous results and find that in the case of K-type stars, they are an artifact of the application of chromospheric models best suited to the Sun than to stars with significantly lower T {sub eff}. The case of the F-type rapid rotators can be explained by the measurement uncertainties of the equivalent widths, but they may also be due to a non-magnetic heating component in their atmospheres. With the exceptions noted above, preliminary results suggest that the average heating rates in the active regions are the same from one star to the other, differing in the spatially integrated, observed level of activity due to the area coverage. Hence, differences in activity in this sample are mainly due to the filling factor of active regions.« less

Cosmology with XMM galaxy clusters: the X-CLASS/GROND catalogue and photometric redshifts

NASA Astrophysics Data System (ADS)

Ridl, J.; Clerc, N.; Sadibekova, T.; Faccioli, L.; Pacaud, F.; Greiner, J.; Krühler, T.; Rau, A.; Salvato, M.; Menzel, M.-L.; Steinle, H.; Wiseman, P.; Nandra, K.; Sanders, J.

2017-06-01

The XMM Cluster Archive Super Survey (X-CLASS) is a serendipitously detected X-ray-selected sample of 845 galaxy clusters based on 2774 XMM archival observations and covering an approximately 90 deg2 spread across the high-Galactic latitude (|b| > 20°) sky. The primary goal of this survey is to produce a well-selected sample of galaxy clusters on which cosmological analyses can be performed. This paper presents the photometric redshift follow-up of a high signal-to-noise ratio subset of 265 of these clusters with declination δ < +20° with Gamma-Ray Burst Optical and Near-Infrared Detector (GROND), a 7-channel (grizJHK) simultaneous imager on the MPG 2.2-m telescope at the ESO La Silla Observatory. We use a newly developed technique based on the red sequence colour-redshift relation, enhanced with information coming from the X-ray detection to provide photometric redshifts for this sample. We determine photometric redshifts for 232 clusters, finding a median redshift of z = 0.39 with an accuracy of Δz = 0.02(1 + z) when compared to a sample of 76 spectroscopically confirmed clusters. We also compute X-ray luminosities for the entire sample and find a median bolometric luminosity of 7.2 × 1043 erg s-1 and a median temperature of 2.9 keV. We compare our results to those of the XMM-XCS and XMM-XXL surveys, finding good agreement in both samples. The X-CLASS catalogue is available online at http://xmm-lss.in2p3.fr:8080/l4sdb/.

Development of instructional, interactive, multimedia anatomy dissection software: a student-led initiative.

PubMed

Inwood, Matthew J; Ahmad, Jamil

2005-11-01

Although dissection provides an unparalleled means of teaching gross anatomy, it constitutes a significant logistical and financial investment for educational institutions. The increasing availability and waning cost of computer equipment has enabled many institutions to supplement their anatomy curriculum with Computer Aided Learning (CAL) software. At the Royal College of Surgeons in Ireland, two undergraduate medical students designed and produced instructional anatomy dissection software for use by first and second year medical students. The software consists of full-motion, narrated, QuickTime MPG movies presented in a Macromedia environment. Forty-four movies, between 1-11 min in duration, were produced. Each movie corresponds to a dissection class and precisely demonstrates the dissection and educational objectives for that class. The software is distributed to students free of charge and they are encouraged to install it on their Apple iBook computers. Results of a student evaluation indicated that the software was useful, easy to use, and improved the students' experience in the dissection classes. The evaluation also indicated that only a minority of students regularly used the software or had it installed on their laptop computers. Accordingly, effort should also be directed toward making the software more accessible and increasing students' comfort and familiarity with novel instructional media. The successful design and implementation of this software demonstrates that CAL software can be employed to augment, enhance and improve anatomy instruction. In addition, effective, high quality, instructional multimedia software can be tailored to an educational institution's requirements and produced by novice programmers at minimal cost. Copyright 2005 Wiley-Liss, Inc

Bioengineering a non-genotoxic vector for genetic modification of mesenchymal stem cells.

PubMed

Chen, Xuguang; Nomani, Alireza; Patel, Niket; Nouri, Faranak S; Hatefi, Arash

2018-01-01

Vectors used for stem cell transfection must be non-genotoxic, in addition to possessing high efficiency, because they could potentially transform normal stem cells into cancer-initiating cells. The objective of this research was to bioengineer an efficient vector that can be used for genetic modification of stem cells without any negative somatic or genetic impact. Two types of multifunctional vectors, namely targeted and non-targeted were genetically engineered and purified from E. coli. The targeted vectors were designed to enter stem cells via overexpressed receptors. The non-targeted vectors were equipped with MPG and Pep1 cell penetrating peptides. A series of commercial synthetic non-viral vectors and an adenoviral vector were used as controls. All vectors were evaluated for their efficiency and impact on metabolic activity, cell membrane integrity, chromosomal aberrations (micronuclei formation), gene dysregulation, and differentiation ability of stem cells. The results of this study showed that the bioengineered vector utilizing VEGFR-1 receptors for cellular entry could transfect mesenchymal stem cells with high efficiency without inducing genotoxicity, negative impact on gene function, or ability to differentiate. Overall, the vectors that utilized receptors as ports for cellular entry (viral and non-viral) showed considerably better somato- and genosafety profiles in comparison to those that entered through electrostatic interaction with cellular membrane. The genetically engineered vector in this study demonstrated that it can be safely and efficiently used to genetically modify stem cells with potential applications in tissue engineering and cancer therapy. Copyright © 2017 Elsevier Ltd. All rights reserved.

Thermometry of the system “heat-resistant sample - incident plasma stream”

NASA Astrophysics Data System (ADS)

Sargsyan, M. A.; Chinnov, V. F.; Kavyrshin, D. I.; Gadzhiev, M. Kh; Khromov, M. A.; Chistolinov, A. V.; Senchenko, V. N.

2017-11-01

To study the interacting system “heat-resistant sample - an incident plasma stream” a setup of synchronized measurement equipment was developed and tested that recorded the main parameters of such interaction. Heat resistance tests were carried out on the samples of MPG-6 grade isotropic graphite, and samples of pyrolytic graphite that were subjected to a long (60 … 100 s) exposure to nitrogen, argon and air plasma streams at atmospheric pressure. As plasma generators a series of plasma torches with a vortex stabilization of the stream and an expanding anode channels was used. The temperature and composition of the plasma in the jet and near the sample were determined using two AvaSpec2048 and AvaSpec3648 scanning optical spectrometers and the MS5402i spectrograph with the Andor matrix at its outlet. The surface temperature of the sample was determined in real time using three independent ways: two pyrometric systems - a high-speed micro-pyrometer FMP1001 and a two-position visualization of the heated sample by high-speed Motion Pro X3 and VS-FAST cameras, and the spectral analysis of the wide-range thermal radiation of the samples. The main method for determining the rate of material loss during the action of a plasma jet on it was to analyze a two-position synchronous visualization of the “jet-sample” system. When a crater was formed on the surface of the sample under the “dagger” effect of a plasma jet, a video recording system of the crater zone was used, backlit using the “laser knife” method.

VizieR Online Data Catalog: Multiwavelength catalog in the SEP field (Baronchelli+, 2016)

NASA Astrophysics Data System (ADS)

Baronchelli, I.; Scarlata, C.; Rodighiero, G.; Franceschini, A.; Capak, P. L.; Mei, S.; Vaccari, M.; Marchetti, L.; Hibon, P.; Sedgwick, C.; Pearson, C.; Serjeant, S.; Menendez-Delmestre, K.; Salvato, M.; Malkan, M.; Teplitz, H. I.; Hayes, M.; Colbert, J.; Papovich, C.; Devlin, M.; Kovacs, A.; Scott, K. S.; Surace, J.; Kirkpatrick, J. D.; Atek, H.; Urrutia, T.; Scoville, N. Z.; Takeuchi, T. T.

2016-04-01

Spitzer-IRAC/MIPS Extragalactic survey (SIMES) is a Spitzer Cycle 8 General Observer program (PID 80039, P.I.: Scarlata) observed during the warm mission phase. The survey covers an area of 7.74deg2 to a depth of ~5.80μJy (3σ) at 3.6μm and 5.25μJy at 4.5μm. The field was covered in two visits, between 2011 November 16 and 23, in order to facilitate identification and removal of asteroids. The MIPS 24μm catalog is described in Clements et al. (2011, J/MNRAS/411/373). This catalog covers an area of ~12deg2 in the South Ecliptic Pole (SEP) region and includes counterparts at 70um of the 24um detected sources, and so we limit the analysis to the cross-correlation between IRAC and MIPS 24 and report the 70um association identified in the original MIPS catalog. The SIMES field was observed as part of the Herschel Multi-tiered Extragalactic Survey (HerMES, Oliver et al. 2012, VIII/95; Wang et al. 2014MNRAS.444.2870W). Here, we keep only those sources with fluxes above 3σ in at least one SPIRE band (250, 350 or 500um). A central area of approximately one square degree was observed at the MPG/ESO 2.2m telescope at La Silla with the Wide Field Imager (WFI) during 2010 October (P.I.: T. Takeuchi). Four pointings with the Rc broadband filter (λc=6517.25Å) were obtained, covering a total area of 1.13deg2. (1 data file).

Seeds Of Life In Space (SOLIS): The Organic Composition Diversity at 300-1000 au Scale in Solar-type Star-forming Regions

NASA Astrophysics Data System (ADS)

Ceccarelli, C.; Caselli, P.; Fontani, F.; Neri, R.; López-Sepulcre, A.; Codella, C.; Feng, S.; Jiménez-Serra, I.; Lefloch, B.; Pineda, J. E.; Vastel, C.; Alves, F.; Bachiller, R.; Balucani, N.; Bianchi, E.; Bizzocchi, L.; Bottinelli, S.; Caux, E.; Chacón-Tanarro, A.; Choudhury, R.; Coutens, A.; Dulieu, F.; Favre, C.; Hily-Blant, P.; Holdship, J.; Kahane, C.; Jaber Al-Edhari, A.; Laas, J.; Ospina, J.; Oya, Y.; Podio, L.; Pon, A.; Punanova, A.; Quenard, D.; Rimola, A.; Sakai, N.; Sims, I. R.; Spezzano, S.; Taquet, V.; Testi, L.; Theulé, P.; Ugliengo, P.; Vasyunin, A. I.; Viti, S.; Wiesenfeld, L.; Yamamoto, S.

2017-12-01

Complex organic molecules have been observed for decades in the interstellar medium. Some of them might be considered as small bricks of the macromolecules at the base of terrestrial life. It is hence particularly important to understand organic chemistry in Solar-like star-forming regions. In this article, we present a new observational project: Seeds Of Life In Space (SOLIS). This is a Large Project using the IRAM-NOEMA interferometer, and its scope is to image the emission of several crucial organic molecules in a sample of Solar-like star-forming regions in different evolutionary stages and environments. Here we report the first SOLIS results, obtained from analyzing the spectra of different regions of the Class 0 source NGC 1333-IRAS4A, the protocluster OMC-2 FIR4, and the shock site L1157-B1. The different regions were identified based on the images of formamide (NH2CHO) and cyanodiacetylene (HC5N) lines. We discuss the observed large diversity in the molecular and organic content, both on large (3000-10,000 au) and relatively small (300-1000 au) scales. Finally, we derive upper limits to the methoxy fractional abundance in the three observed regions of the same order of magnitude of that measured in a few cold prestellar objects, namely ˜ {10}-12-10-11 with respect to H2 molecules. Based on observations carried out under project number L15AA with the IRAM-NOEMA interferometer. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain).

A likelihood ratio-based method to predict exact pedigrees for complex families from next-generation sequencing data.

PubMed

Heinrich, Verena; Kamphans, Tom; Mundlos, Stefan; Robinson, Peter N; Krawitz, Peter M

2017-01-01

Next generation sequencing technology considerably changed the way we screen for pathogenic mutations in rare Mendelian disorders. However, the identification of the disease-causing mutation amongst thousands of variants of partly unknown relevance is still challenging and efficient techniques that reduce the genomic search space play a decisive role. Often segregation- or linkage analysis are used to prioritize candidates, however, these approaches require correct information about the degree of relationship among the sequenced samples. For quality assurance an automated control of pedigree structures and sample assignment is therefore highly desirable in order to detect label mix-ups that might otherwise corrupt downstream analysis. We developed an algorithm based on likelihood ratios that discriminates between different classes of relationship for an arbitrary number of genotyped samples. By identifying the most likely class we are able to reconstruct entire pedigrees iteratively, even for highly consanguineous families. We tested our approach on exome data of different sequencing studies and achieved high precision for all pedigree predictions. By analyzing the precision for varying degrees of relatedness or inbreeding we could show that a prediction is robust down to magnitudes of a few hundred loci. A java standalone application that computes the relationships between multiple samples as well as a Rscript that visualizes the pedigree information is available for download as well as a web service at www.gene-talk.de CONTACT: heinrich@molgen.mpg.deSupplementary information: Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press.

A likelihood ratio-based method to predict exact pedigrees for complex families from next-generation sequencing data

PubMed Central

Kamphans, Tom; Mundlos, Stefan; Robinson, Peter N.; Krawitz, Peter M.

2017-01-01

Motivation: Next generation sequencing technology considerably changed the way we screen for pathogenic mutations in rare Mendelian disorders. However, the identification of the disease-causing mutation amongst thousands of variants of partly unknown relevance is still challenging and efficient techniques that reduce the genomic search space play a decisive role. Often segregation- or linkage analysis are used to prioritize candidates, however, these approaches require correct information about the degree of relationship among the sequenced samples. For quality assurance an automated control of pedigree structures and sample assignment is therefore highly desirable in order to detect label mix-ups that might otherwise corrupt downstream analysis. Results: We developed an algorithm based on likelihood ratios that discriminates between different classes of relationship for an arbitrary number of genotyped samples. By identifying the most likely class we are able to reconstruct entire pedigrees iteratively, even for highly consanguineous families. We tested our approach on exome data of different sequencing studies and achieved high precision for all pedigree predictions. By analyzing the precision for varying degrees of relatedness or inbreeding we could show that a prediction is robust down to magnitudes of a few hundred loci. Availability and Implementation: A java standalone application that computes the relationships between multiple samples as well as a Rscript that visualizes the pedigree information is available for download as well as a web service at www.gene-talk.de. Contact: heinrich@molgen.mpg.de Supplementary information: Supplementary data are available at Bioinformatics online. PMID:27565584

Series hybrid vehicles and optimized hydrogen engine design

NASA Astrophysics Data System (ADS)

Smith, J. R.; Aceves, S.; Vanblarigan, P.

1995-05-01

Lawrence Livermore, Sandia Livermore and Los Alamos National Laboratories have a joint project to develop an optimized hydrogen fueled engine for series hybrid automobiles. The major divisions of responsibility are: system analysis, engine design and kinetics modeling by LLNL; performance and emission testing, and friction reduction by SNL; computational fluid mechanics and combustion modeling by LANL. This project is a component of the Department of Energy, Office of Utility Technology, National Hydrogen Program. We report here on the progress on system analysis and preliminary engine testing. We have done system studies of series hybrid automobiles that approach the PNGV design goal of 34 km/liter (80 mpg), for 384 km (240 mi) and 608 km (380 mi) ranges. Our results indicate that such a vehicle appears feasible using an optimized hydrogen engine. The impact of various on-board storage options on fuel economy are evaluated. Experiments with an available engine at the Sandia Combustion Research Facility demonstrated NO(x) emissions of 10 to 20 ppm at an equivalence ratio of 0.4, rising to about 500 ppm at 0.5 equivalence ratio using neat hydrogen. Hybrid vehicle simulation studies indicate that exhaust NO(x) concentrations must be less than 180 ppm to meet the 0.2 g/mile California Air Resources Board ULEV or Federal Tier-2 emissions regulations. We have designed and fabricated a first generation optimized hydrogen engine head for use on an existing single cylinder Onan engine. This head currently features 14.8:1 compression ratio, dual ignition, water cooling, two valves and open quiescent combustion chamber to minimize heat transfer losses.

The Cosmic Christmas Ghost - Two Stunning Pictures of Young Stellar Clusters

NASA Astrophysics Data System (ADS)

2005-12-01

Just like Charles Dickens' Christmas Carol takes us on a journey into past, present and future in the time of only one Christmas Eve, two of ESO' s telescopes captured various stages in the life of a star in a single image. ESO PR Photo 42a/05 shows the area surrounding the stellar cluster NGC 2467, located in the southern constellation of Puppis (" The Stern" ). With an age of a few million years at most, it is a very active stellar nursery, where new stars are born continuously from large clouds of dust and gas. The image, looking like a colourful cosmic ghost or a gigantic celestial Mandrill [1] , contains the open clusters Haffner 18 (centre) and Haffner 19 (middle right: it is located inside the smaller pink region - the lower eye of the Mandrill), as well as vast areas of ionised gas. The bright star at the centre of the largest pink region on the bottom of the image is HD 64315, a massive young star that is helping shaping the structure of the whole nebular region. ESO PR Photo 42a/05 was taken with the Wide-Field Imager camera at the 2.2m MPG/ESO telescope located at La Silla, in Chile. Another image of the central part of this area is shown as ESO PR Photo 42b/05. It was obtained with the FORS2 instrument at ESO' s Very Large Telescope on Cerro Paranal, also in Chile. ESO PR Photo 42b/05 zooms in on the open stellar cluster Haffner 18, perfectly illustrating three different stages of this process of star formation: In the centre of the picture, Haffner 18, a group of mature stars that have already dispersed their birth nebulae, represents the completed product or immediate past of the star formation process. Located at the bottom left of this cluster, a very young star, just come into existence and, still surrounded by its birth cocoon of gas, provides insight into the very present of star birth. Finally, the dust clouds towards the right corner of the image are active stellar nurseries that will produce more new stars in the future. Haffner 18 contains about 50 stars, among which several short lived, massive ones. The massive star still surrounded by a small, dense shell of hydrogen, has the rather cryptic name of FM3060a. The shell is about 2.5 light-years wide and expands at a speed of 20 km/s. It must have been created some 40,000 years ago. The cluster is between 25,000 and 30,000 light-years away from us [2]. Technical information: ESO PR Photo 42a/05 is based on images obtained with the WFI instrument on the ESO/MPG 2.2-m telescope for Rubio/Minniti/Barba/Mendez on December, 2003. The 49 observations were done in six different filters : U (2 hour exposure), B, O III, V, H-alpha and R (1 hour exposure each). The data were extracted from the ESO Science Archive. The raw observations were reduced and combined by Benoî t Vandame (ESO). North is right and East is to the top. The field of view is about 30x30 arcmin. ESO PR Photo 42a/05 is a colour-composite image obtained with the FORS2 multi-mode instrument on Kueyen, the second Unit Telescope of the Very Large Telescope. The data was collected during the commissioning of the instrument in February 2000, through 4 filters: B, V, R and I, for a total exposure time of only 11 minutes. The observations were extracted from the ESO Science Archive and reduced by Henri Boffin (ESO). North is above and East is to the left. Final processing of ESO PR Photo 42a/05 and 42b/05 was done by Kristina Boneva and Haennes Heyer (ESO).

New approaches to non-surgical sterilization for dogs and cats: Opportunities and challenges.

PubMed

Rhodes, Linda

2017-04-01

Over the last 40 years, researchers have explored methods to non-surgically suppress fertility in animals. Immunocontraception has been used to control wildlife populations but does not confer long-term immunity. The gonadotropin-releasing hormone (GnRH) agonist deslorelin, formulated as an implant to provide 6-month to 1-year suppression of fertility in male dogs, is available commercially in some countries. Neither of these approaches provide permanent sterility. A single-dose, permanent treatment would be a valuable tool in dog and cat population control. The Michelson Prize and Grants (MPG) programme was initiated "to eliminate shelter euthanasia of healthy, adoptable companion animals and reduce populations of feral and free-roaming cats and dogs" offering a $25 million US prize for a non-surgical sterilant that is effective as a single treatment in both male and female dogs and cats. Michelson Prize and Grants programme has offered US $50 million in grant money for research and has attracted scientists worldwide. Approaches under study include gene therapy, small interfering RNA to inhibit reproductive targets and delivery of cytotoxins to pituitary gonadotrophs or GnRH producing neurons in the hypothalamus. Research in implant technology that could deliver compounds over an animal's lifetime is also underway. Details of funded grants and results to date can be found at: http://www.michelsonprizeandgrants.org/michelson-grants/research-findings. The next steps are translating the most promising research into products. The Alliance for Contraception of Cats and Dogs (ACC&D) is helping to research practical methods of marking sterilized animals to avoid costly retreatment and population modelling that will help guide field workers in use of resources for sterilization programmes. © 2016 Blackwell Verlag GmbH.

Birth control vaccine targeting leukemia inhibitory factor.

PubMed

Lemons, Angela R; Naz, Rajesh K

2012-02-01

The population explosion and unintended pregnancies resulting in elective abortions continue to impose major public health issues. This calls for a better method of contraception. Immunocontraception has been proposed as a valuable alternative that can fulfill most, if not all, of the properties of an ideal contraceptive. There are several targets that are being explored for contraceptive vaccine development. Leukemia inhibitory factor (LIF), a member of interleukin-6 family, is required for embryo development and successful blastocyst implantation in several mammalian species. The present study was conducted to examine if LIF can be a target for the development of a birth control vaccine. Three sequences from LIF and two sequences from LIF-receptor (LIF-R) that span the regions involved in ligand-receptor binding were delineated, and peptides were synthesized based upon these sequences. Antibodies raised against these five peptides reduced LIF bioactivity in an in vitro culture assay using BA/F3 mLIF-R-mpg130 cells. Vaccines were prepared by conjugating these peptides to various carrier proteins. Immunization of female mice with these peptide vaccines induced a long-lasting, circulating as well as local antibody response in various parts of the genital tract, and resulted in a significant (P ≤ 0.05) inhibition in fertility in all the three trials; the LIF-R peptide vaccines proved to be a better vaccine target. The data indicate that LIF/LIF-R is an excellent target for the development of a birth control vaccine. This is the first study, to our knowledge, that examined LIF/LIF-R as a target for immunocontraception. The findings of this study can be easily translated to humans since LIF/LIF-R is also important for implantation and pregnancy in women. Copyright © 2011 Wiley Periodicals, Inc.

Optimal design of stimulus experiments for robust discrimination of biochemical reaction networks.

PubMed

Flassig, R J; Sundmacher, K

2012-12-01

Biochemical reaction networks in the form of coupled ordinary differential equations (ODEs) provide a powerful modeling tool for understanding the dynamics of biochemical processes. During the early phase of modeling, scientists have to deal with a large pool of competing nonlinear models. At this point, discrimination experiments can be designed and conducted to obtain optimal data for selecting the most plausible model. Since biological ODE models have widely distributed parameters due to, e.g. biologic variability or experimental variations, model responses become distributed. Therefore, a robust optimal experimental design (OED) for model discrimination can be used to discriminate models based on their response probability distribution functions (PDFs). In this work, we present an optimal control-based methodology for designing optimal stimulus experiments aimed at robust model discrimination. For estimating the time-varying model response PDF, which results from the nonlinear propagation of the parameter PDF under the ODE dynamics, we suggest using the sigma-point approach. Using the model overlap (expected likelihood) as a robust discrimination criterion to measure dissimilarities between expected model response PDFs, we benchmark the proposed nonlinear design approach against linearization with respect to prediction accuracy and design quality for two nonlinear biological reaction networks. As shown, the sigma-point outperforms the linearization approach in the case of widely distributed parameter sets and/or existing multiple steady states. Since the sigma-point approach scales linearly with the number of model parameter, it can be applied to large systems for robust experimental planning. An implementation of the method in MATLAB/AMPL is available at http://www.uni-magdeburg.de/ivt/svt/person/rf/roed.html. flassig@mpi-magdeburg.mpg.de Supplementary data are are available at Bioinformatics online.

An Upper Limit on the Mass of the Circumplanetary Disk for DH Tau b

NASA Astrophysics Data System (ADS)

Wolff, Schuyler G.; Ménard, François; Caceres, Claudio; Lefèvre, Charlene; Bonnefoy, Mickael; Cánovas, Héctor; Maret, Sébastien; Pinte, Christophe; Schreiber, Matthias R.; van der Plas, Gerrit

2017-07-01

DH Tau is a young (˜1 Myr) classical T Tauri star. It is one of the few young PMS stars known to be associated with a planetary mass companion, DH Tau b, orbiting at large separation and detected by direct imaging. DH Tau b is thought to be accreting based on copious {{H}}α emission and exhibits variable Paschen Beta emission. NOEMA observations at 230 GHz allow us to place constraints on the disk dust mass for both DH Tau b and the primary in a regime where the disks will appear optically thin. We estimate a disk dust mass for the primary, DH Tau A of 17.2+/- 1.7 {M}\\oplus , which gives a disk to star mass ratio of 0.014 (assuming the usual gas to dust mass ratio of 100 in the disk). We find a conservative disk dust mass upper limit of 0.42 M ⊕ for DH Tau b, assuming that the disk temperature is dominated by irradiation from DH Tau b itself. Given the environment of the circumplanetary disk, variable illumination from the primary or the equilibrium temperature of the surrounding cloud would lead to even lower disk mass estimates. A MCFOST radiative transfer model, including heating of the circumplanetary disk by DH Tau b and DH Tau A, suggests that a mass-averaged disk temperature of 22 K is more realistic, resulting in a dust disk mass upper limit of 0.09 M ⊕ for DH Tau b. We place DH Tau b in context with similar objects and discuss the consequences for planet formation models. This work is based on observations carried out under project D15AC with the IRAM NOEMA Interferometer. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain).

Genotoxic effect of exposure to metal(loid)s. A molecular epidemiology survey of populations living and working in Panasqueira mine area, Portugal.

PubMed

Coelho, Patrícia; García-Lestón, Julia; Costa, Solange; Costa, Carla; Silva, Susana; Dall'Armi, Valentina; Zoffoli, Roberto; Bonassi, Stefano; de Lima, João Pereira; Gaspar, Jorge Francisco; Pásaro, Eduardo; Laffon, Blanca; Teixeira, João Paulo

2013-10-01

Previous studies investigating the exposure to metal(loid)s of populations living in the Panasqueira mine area of central Portugal found a higher internal dose of elements such as arsenic, chromium, lead, manganese, molybdenum and zinc in exposed individuals. The aims of the present study were to evaluate the extent of genotoxic damage caused by environmental and occupational exposure in individuals previously tested for metal(loid) levels in different biological matrices, and the possible modulating role of genetic polymorphisms involved in metabolism and DNA repair. T-cell receptor mutation assay, comet assay, micronucleus (MN) test and chromosomal aberrations (CA) were performed in a group of 122 subjects working in the Panasqueira mine or living in the same region. The modifying effect of polymorphisms in GSTA2, GSTM1, GSTP1, GSTT1, XRCC1, APEX1, MPG, MUTYH, OGG1, PARP1, PARP4, ERCC1, ERCC4, and ERCC5 genes was investigated. Significant increases in the frequency of all biomarkers investigated were found in exposed groups, however those environmentally exposed were generally higher. Significant influences of polymorphisms were observed for GSTM1 deletion and OGG1 rs1052133 on CA frequencies, APEX1 rs1130409 on DNA damage, ERCC1 rs3212986 on DNA damage and CA frequency, and ERCC4 rs1800067 on MN and CA frequencies. Our results show that the metal(loid) contamination in the Panasqueira mine area induced genotoxic damage both in individuals working in the mine or living in the area. The observed effects are closely associated to the internal exposure dose, and are more evident in susceptible genotypes. The urgent intervention of authorities is required to protect exposed populations. © 2013.

First Measurements of 15N Fractionation in N2H+ toward High-mass Star-forming Cores

NASA Astrophysics Data System (ADS)

Fontani, F.; Caselli, P.; Palau, A.; Bizzocchi, L.; Ceccarelli, C.

2015-08-01

We report on the first measurements of the isotopic ratio 14N/15N in N2H+ toward a statistically significant sample of high-mass star-forming cores. The sources belong to the three main evolutionary categories of the high-mass star formation process: high-mass starless cores, high-mass protostellar objects, and ultracompact H ii regions. Simultaneous measurements of the 14N/15N ratio in CN have been made. The 14N/15N ratios derived from N2H+ show a large spread (from ∼180 up to ∼1300), while those derived from CN are in between the value measured in the terrestrial atmosphere (∼270) and that of the proto-solar nebula (∼440) for the large majority of the sources within the errors. However, this different spread might be due to the fact that the sources detected in the N2H+ isotopologues are more than those detected in the CN ones. The 14N/15N ratio does not change significantly with the source evolutionary stage, which indicates that time seems to be irrelevant for the fractionation of nitrogen. We also find a possible anticorrelation between the 14N/15N (as derived from N2H+) and the H/D isotopic ratios. This suggests that 15N enrichment could not be linked to the parameters that cause D enrichment, in agreement with the prediction by recent chemical models. These models, however, are not able to reproduce the observed large spread in 14N/15N, pointing out that some important routes of nitrogen fractionation could be still missing in the models. Based on observations carried out with the IRAM-30 m Telescope. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain).

Diagnostic accuracy of high-risk HPV DNA genotyping for primary cervical cancer screening and triage of HPV-positive women, compared to cytology: preliminary results of the PIPAVIR study.

PubMed

Chatzistamatiou, Kimon; Moysiadis, Theodoros; Angelis, Eleftherios; Kaufmann, Andreas; Skenderi, Alkmini; Jansen-Duerr, Pidder; Lekka, Irini; Kilintzis, Vasilis; Angelidou, Stamatia; Katsiki, Evangelia; Hagemann, Ingke; Tsertanidou, Athena; Koch, Isabel; Boecher, Oliver; Soutschek, Erwin; Maglaveras, Nikolaos; Agorastos, Theodoros

2017-05-01

The purpose of the presented PIPAVIR (persistent infections with human papillomaviruses; http://www.pipavir.com ) subanalysis is to assess the performance of high-risk (hr) HPV-DNA genotyping as a method of primary cervical cancer screening and triage of HPV positive women to colposcopy compared to liquid-based cytology (LBC) in an urban female population. Women, aged 30-60, provided cervicovaginal samples at the Family-Planning Centre, Hippokratio Hospital of Thessaloniki, Greece, and the Department of Gynecology and Obstetrics in Mare Klinikum, Kiel, Germany. Cytology and HPV genotyping was performed using LBC and HPV Multiplex Genotyping (MPG), respectively. Women positive for cytology [atypical squamous cells of undetermined significance (ASC-US) or worse] or hrHPV were referred for colposcopy. Among 1723/1762 women included in the final analysis, hrHPV and HPV16/18 prevalence was 17.7 and 9.6%, respectively. Cytology was ASCUS or worse in 7.6%. Cervical Intraepithelial Neoplasia grade 2 or worse (CIN2+) was detected in 28 women (1.6%). Sensitivity of cytology (ASCUS or worse) and HPV DNA testing for the detection of CIN2+ was 50.0 and 100%, and specificity was 94.49 and 85.49%, respectively. The screening approach according to which only women positive for HPV16/18 and for hrHPV(non16/18) with ASCUS or worse were referred to colposcopy presented 78.57% sensitivity and 13.17% positive predictive value (PPV). HPV testing represents a more sensitive methodology for primary cervical cancer screening compared to cytology. For triage of HPV positive women to colposcopy, partial HPV genotyping offers better sensitivity than cytology, at the cost of higher number of colposcopies.

Inter-machine validation study of neoclassical transport modelling in medium- to high-density stellarator-heliotron plasmas

NASA Astrophysics Data System (ADS)

Dinklage, A.; Yokoyama, M.; Tanaka, K.; Velasco, J. L.; López-Bruna, D.; Beidler, C. D.; Satake, S.; Ascasíbar, E.; Arévalo, J.; Baldzuhn, J.; Feng, Y.; Gates, D.; Geiger, J.; Ida, K.; Isaev, M.; Jakubowski, M.; López-Fraguas, A.; Maaßberg, H.; Miyazawa, J.; Morisaki, T.; Murakami, S.; Pablant, N.; Kobayashi, S.; Seki, R.; Suzuki, C.; Suzuki, Y.; Turkin, Yu.; Wakasa, A.; Wolf, R.; Yamada, H.; Yoshinuma, M.; LHD Exp. Group; TJ-II Team; W7-AS Team

2013-06-01

A comparative study of energy transport for medium- to high-density discharges in the stellarator-heliotrons TJ-II, W7-AS and LHD is carried out. The specific discharge parameters are chosen to apply a recently concluded benchmarking study of neoclassical (NC) transport coefficients (Beidler et al 2011 Nucl. Fusion 51 076001) to perform this validation study. In contrast to previous experiments at low densities for which electron transport was predominant (Yokoyama et al 2007 Nucl. Fusion 47 1213), the current discharges also exhibit significant ion energy transport. As it affects the energy transport in 3D devices, the ambipolar radial electric field is addressed as well. For the discharges described, ion-root conditions, i.e. a small negative radial electric field were found. The energy transport in the peripheral region cannot be explained by NC theory. Within a ‘core region’(r/a < 1/2 ˜ 2/3), the predicted NC energy fluxes comply with experimental findings for W7-AS. For TJ-II, compliance in the core region is found for the particle transport and the electron energy transport. For the specific LHD discharges, the core energy transport complied with NC theory except for the electron energy transport in the inward-shifted magnetic configuration. The NC radial electric field tends to agree with experimental results for all devices but is measured to be more negative in the core of both LHD and TJ-II. As a general observation, the energy confinement time approaches the gyro-Bohm-type confinement scaling ISS04 (Yamada et al 2005 Nucl. Fusion 45 1684). This work is carried out within the International Stellarator-Heliotron Profile Database (www.ipp.mpg.de/ISS and http://ishpdb.nifs.ac.jp/index.html).

Optical dissection of odor information processing in vivo using GCaMPs expressed in specified cell types of the olfactory bulb

PubMed Central

Wachowiak, Matt; Economo, Michael N.; Díaz-Quesada, Marta; Brunert, Daniela; Wesson, Daniel W.; White, John. A.; Rothermel, Markus

2013-01-01

Understanding central processing requires precise monitoring of neural activity across populations of identified neurons in the intact brain. Here we used recently-optimized variants of the genetically-encoded calcium sensor GCaMP (GCaMP3 and GCaMPG5G) to image activity among genetically- and anatomically-defined neuronal populations in the olfactory bulb (OB), including two types of GABA-ergic interneurons (periglomerular (PG) and short axon (SA) cells) and OB output neurons (mitral/tufted (MT) cells) projecting to piriform cortex. We first established that changes in neuronal spiking can be accurately related to GCaMP fluorescence changes via a simple quantitative relationship over a large dynamic range. We next used in vivo two-photon imaging from individual neurons and epifluorescence signals reflecting population-level activity to investigate the spatiotemporal representation of odorants across these neuron types in anesthetized and awake mice. Under anesthesia, individual PG and SA cells showed temporally simple responses and little spontaneous activity, while MT cells were spontaneously active and showed diverse temporal responses. At the population level, response patterns of PG, SA and MT cells were surprisingly similar to those imaged from sensory inputs, with shared odorant-specific topography across the dorsal OB and inhalation-coupled temporal dynamics. During wakefulness, PG and SA cell responses increased in magnitude but remained temporally simple while those of MT cells changed to complex spatiotemporal patterns reflecting restricted excitation and widespread inhibition. These results point to multiple circuit elements with distinct roles in transforming odor representations in the OB and provide a framework for further dissecting early olfactory processing using optical and genetic tools. PMID:23516293

Automatic decomposition of kinetic models of signaling networks minimizing the retroactivity among modules.

PubMed

Saez-Rodriguez, Julio; Gayer, Stefan; Ginkel, Martin; Gilles, Ernst Dieter

2008-08-15

The modularity of biochemical networks in general, and signaling networks in particular, has been extensively studied over the past few years. It has been proposed to be a useful property to analyze signaling networks: by decomposing the network into subsystems, more manageable units are obtained that are easier to analyze. While many powerful algorithms are available to identify modules in protein interaction networks, less attention has been paid to signaling networks de.ned as chemical systems. Such a decomposition would be very useful as most quantitative models are de.ned using the latter, more detailed formalism. Here, we introduce a novel method to decompose biochemical networks into modules so that the bidirectional (retroactive) couplings among the modules are minimized. Our approach adapts a method to detect community structures, and applies it to the so-called retroactivity matrix that characterizes the couplings of the network. Only the structure of the network, e.g. in SBML format, is required. Furthermore, the modularized models can be loaded into ProMoT, a modeling tool which supports modular modeling. This allows visualization of the models, exploiting their modularity and easy generation of models of one or several modules for further analysis. The method is applied to several relevant cases, including an entangled model of the EGF-induced MAPK cascade and a comprehensive model of EGF signaling, demonstrating its ability to uncover meaningful modules. Our approach can thus help to analyze large networks, especially when little a priori knowledge on the structure of the network is available. The decomposition algorithms implemented in MATLAB (Mathworks, Inc.) are freely available upon request. ProMoT is freely available at http://www.mpi-magdeburg.mpg.de/projects/promot. Supplementary data are available at Bioinformatics online.

Discovery of the elusive radical NCO and confirmation of H2NCO+ in space

NASA Astrophysics Data System (ADS)

Marcelino, N.; Agúndez, M.; Cernicharo, J.; Roueff, E.; Tafalla, M.

2018-05-01

The isocyanate radical (NCO) is the simplest molecule containing the backbone of the peptide bond, C(=O)-N. This bond has a prebiotic interest since it links two amino acids to form large chains of proteins. It is also present in some organic molecules observed in space such as HNCO, NH2CHO, and CH3NCO. In this letter, we report the first detection in space of NCO towards the dense core L483. We also report the identification of the ion H2NCO+, which definitively confirms its presence in space, and observations of HNCO, HOCN, and HCNO in the same source. For NCO, we derive a column density of 2.2 × 1012 cm-2, which means that it is only 5 times less abundant than HNCO. We find that H2NCO+, HOCN, and HCNO have abundances relative to HNCO of 1/400, 1/80, and 1/160, respectively. Both NCO and H2NCO+ are involved in the production of HNCO and several of its isomers. We have updated our previous chemical models involving NCO and the production of the CHNO isomers. Taking into account the uncertainties in the model, the observed abundances are reproduced relatively well. Indeed, the detection of NCO and H2NCO+ in L483 supports the chemical pathways to the formation of the detected CHNO isomers. Sensitive observations of NCO in sources in which other molecules containing the C(=O)-N subunit have been detected could help elucidate its role in prebiotic chemistry in space. Based on observations carried out with the IRAM 30 m telescope. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain).

Fibers in the NGC 1333 proto-cluster

NASA Astrophysics Data System (ADS)

Hacar, A.; Tafalla, M.; Alves, J.

2017-10-01

Are the initial conditions for clustered star formation the same as for non-clustered star formation? To investigate the initial gas properties in young proto-clusters we carried out a comprehensive and high-sensitivity study of the internal structure, density, temperature, and kinematics of the dense gas content of the NGC 1333 region in Perseus, one of the nearest and best studied embedded clusters. The analysis of the gas velocities in the position-position-velocity space reveals an intricate underlying gas organization both in space and velocity. We identified a total of 14 velocity-coherent, (tran-)sonic structures within NGC 1333, with similar physical and kinematic properties than those quiescent, star-forming (aka fertile) fibers previously identified in low-mass star-forming clouds. These fibers are arranged in a complex spatial network, build-up the observed total column density, and contain the dense cores and protostars in this cloud. Our results demonstrate that the presence of fibers is not restricted to low-mass clouds but can be extended to regions of increasing mass and complexity. We propose that the observational dichotomy between clustered and non-clustered star-forming regions might be naturally explained by the distinct spatial density of fertile fibers in these environments. Based on observations carried out under project number 169-11 with the IRAM 30 m Telescope. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain).Based on observations with the 100-m telescope of the MPIfR (Max-Planck-Institut für Radioastronomie) at Effelsberg.Molecular line observations (spectral cubes) are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/606/A123

Analysis of Physicochemical and Structural Properties Determining HIV-1 Coreceptor Usage

PubMed Central

Bozek, Katarzyna; Lengauer, Thomas; Sierra, Saleta; Kaiser, Rolf; Domingues, Francisco S.

2013-01-01

The relationship of HIV tropism with disease progression and the recent development of CCR5-blocking drugs underscore the importance of monitoring virus coreceptor usage. As an alternative to costly phenotypic assays, computational methods aim at predicting virus tropism based on the sequence and structure of the V3 loop of the virus gp120 protein. Here we present a numerical descriptor of the V3 loop encoding its physicochemical and structural properties. The descriptor allows for structure-based prediction of HIV tropism and identification of properties of the V3 loop that are crucial for coreceptor usage. Use of the proposed descriptor for prediction results in a statistically significant improvement over the prediction based solely on V3 sequence with 3 percentage points improvement in AUC and 7 percentage points in sensitivity at the specificity of the 11/25 rule (95%). We additionally assessed the predictive power of the new method on clinically derived ‘bulk’ sequence data and obtained a statistically significant improvement in AUC of 3 percentage points over sequence-based prediction. Furthermore, we demonstrated the capacity of our method to predict therapy outcome by applying it to 53 samples from patients undergoing Maraviroc therapy. The analysis of structural features of the loop informative of tropism indicates the importance of two loop regions and their physicochemical properties. The regions are located on opposite strands of the loop stem and the respective features are predominantly charge-, hydrophobicity- and structure-related. These regions are in close proximity in the bound conformation of the loop potentially forming a site determinant for the coreceptor binding. The method is available via server under http://structure.bioinf.mpi-inf.mpg.de/. PMID:23555214

Inferring Short-Range Linkage Information from Sequencing Chromatograms

PubMed Central

Beggel, Bastian; Neumann-Fraune, Maria; Kaiser, Rolf; Verheyen, Jens; Lengauer, Thomas

2013-01-01

Direct Sanger sequencing of viral genome populations yields multiple ambiguous sequence positions. It is not straightforward to derive linkage information from sequencing chromatograms, which in turn hampers the correct interpretation of the sequence data. We present a method for determining the variants existing in a viral quasispecies in the case of two nearby ambiguous sequence positions by exploiting the effect of sequence context-dependent incorporation of dideoxynucleotides. The computational model was trained on data from sequencing chromatograms of clonal variants and was evaluated on two test sets of in vitro mixtures. The approach achieved high accuracies in identifying the mixture components of 97.4% on a test set in which the positions to be analyzed are only one base apart from each other, and of 84.5% on a test set in which the ambiguous positions are separated by three bases. In silico experiments suggest two major limitations of our approach in terms of accuracy. First, due to a basic limitation of Sanger sequencing, it is not possible to reliably detect minor variants with a relative frequency of no more than 10%. Second, the model cannot distinguish between mixtures of two or four clonal variants, if one of two sets of linear constraints is fulfilled. Furthermore, the approach requires repetitive sequencing of all variants that might be present in the mixture to be analyzed. Nevertheless, the effectiveness of our method on the two in vitro test sets shows that short-range linkage information of two ambiguous sequence positions can be inferred from Sanger sequencing chromatograms without any further assumptions on the mixture composition. Additionally, our model provides new insights into the established and widely used Sanger sequencing technology. The source code of our method is made available at http://bioinf.mpi-inf.mpg.de/publications/beggel/linkageinformation.zip. PMID:24376502

Bi-Force: large-scale bicluster editing and its application to gene expression data biclustering

PubMed Central

Sun, Peng; Speicher, Nora K.; Röttger, Richard; Guo, Jiong; Baumbach, Jan

2014-01-01

Abstract The explosion of the biological data has dramatically reformed today's biological research. The need to integrate and analyze high-dimensional biological data on a large scale is driving the development of novel bioinformatics approaches. Biclustering, also known as ‘simultaneous clustering’ or ‘co-clustering’, has been successfully utilized to discover local patterns in gene expression data and similar biomedical data types. Here, we contribute a new heuristic: ‘Bi-Force’. It is based on the weighted bicluster editing model, to perform biclustering on arbitrary sets of biological entities, given any kind of pairwise similarities. We first evaluated the power of Bi-Force to solve dedicated bicluster editing problems by comparing Bi-Force with two existing algorithms in the BiCluE software package. We then followed a biclustering evaluation protocol in a recent review paper from Eren et al. (2013) (A comparative analysis of biclustering algorithms for gene expressiondata. Brief. Bioinform., 14:279–292.) and compared Bi-Force against eight existing tools: FABIA, QUBIC, Cheng and Church, Plaid, BiMax, Spectral, xMOTIFs and ISA. To this end, a suite of synthetic datasets as well as nine large gene expression datasets from Gene Expression Omnibus were analyzed. All resulting biclusters were subsequently investigated by Gene Ontology enrichment analysis to evaluate their biological relevance. The distinct theoretical foundation of Bi-Force (bicluster editing) is more powerful than strict biclustering. We thus outperformed existing tools with Bi-Force at least when following the evaluation protocols from Eren et al. Bi-Force is implemented in Java and integrated into the open source software package of BiCluE. The software as well as all used datasets are publicly available at http://biclue.mpi-inf.mpg.de. PMID:24682815

Expert system for computer-assisted annotation of MS/MS spectra.

PubMed

Neuhauser, Nadin; Michalski, Annette; Cox, Jürgen; Mann, Matthias

2012-11-01

An important step in mass spectrometry (MS)-based proteomics is the identification of peptides by their fragment spectra. Regardless of the identification score achieved, almost all tandem-MS (MS/MS) spectra contain remaining peaks that are not assigned by the search engine. These peaks may be explainable by human experts but the scale of modern proteomics experiments makes this impractical. In computer science, Expert Systems are a mature technology to implement a list of rules generated by interviews with practitioners. We here develop such an Expert System, making use of literature knowledge as well as a large body of high mass accuracy and pure fragmentation spectra. Interestingly, we find that even with high mass accuracy data, rule sets can quickly become too complex, leading to over-annotation. Therefore we establish a rigorous false discovery rate, calculated by random insertion of peaks from a large collection of other MS/MS spectra, and use it to develop an optimized knowledge base. This rule set correctly annotates almost all peaks of medium or high abundance. For high resolution HCD data, median intensity coverage of fragment peaks in MS/MS spectra increases from 58% by search engine annotation alone to 86%. The resulting annotation performance surpasses a human expert, especially on complex spectra such as those of larger phosphorylated peptides. Our system is also applicable to high resolution collision-induced dissociation data. It is available both as a part of MaxQuant and via a webserver that only requires an MS/MS spectrum and the corresponding peptides sequence, and which outputs publication quality, annotated MS/MS spectra (www.biochem.mpg.de/mann/tools/). It provides expert knowledge to beginners in the field of MS-based proteomics and helps advanced users to focus on unusual and possibly novel types of fragment ions.

Hubble Peers Into the Center of a Spiral

NASA Image and Video Library

2017-12-08

This Hubble image shows the central region of a spiral galaxy known as NGC 247. NGC 247 is a relatively small spiral galaxy in the southern constellation of Cetus (The Whale). Lying at a distance of around 11 million light-years from us, it forms part of the Sculptor Group, a loose collection of galaxies that also contains the more famous NGC 253 (otherwise known as the Sculptor Galaxy). NGC 247’s nucleus is visible here as a bright, whitish patch, surrounded by a mixture of stars, gas and dust. The dust forms dark patches and filaments that are silhouetted against the background of stars, while the gas has formed into bright knots known as H II regions, mostly scattered throughout the galaxy’s arms and outer areas. This galaxy displays one particularly unusual and mysterious feature — it is not visible in this image, but can be seen clearly in wider views of the galaxy, such as a picture from ESO’s MPG/ESO 2.2-meter telescope. The northern part of NGC 247’s disc hosts an apparent void, a gap in the usual swarm of stars and H II regions that spans almost a third of the galaxy’s total length. There are stars within this void, but they are quite different from those around it. They are significantly older, and as a result much fainter and redder. This indicates that the star formation taking place across most of the galaxy’s disk has somehow been arrested in the void region, and has not taken place for around one billion years. Although astronomers are still unsure how the void formed, recent studies suggest it might have been caused by gravitational interactions with part of another galaxy. Image Credit: NASA/ESA

The centre of NGC 247

NASA Image and Video Library

2016-10-03

  This Hubble image shows the central region of a spiral galaxy known as NGC 247. NGC 247 is a relatively small spiral galaxy in the southern constellation of Cetus (The Whale). Lying at a distance of around 11 million light-years from us, it forms part of the Sculptor Group, a loose collection of galaxies that also contains the more famous NGC 253 (otherwise known as the Sculptor Galaxy). NGC 247’s nucleus is visible here as a bright, whitish patch, surrounded by a mixture of stars, gas and dust. The dust forms dark patches and filaments that are silhouetted against the background of stars, while the gas has formed into bright knots known as H II regions, mostly scattered throughout the galaxy’s arms and outer areas. This galaxy displays one particularly unusual and mysterious feature — it is not visible in this image, but can be seen clearly in wider views of the galaxy, such as this picture from ESO’s MPG/ESO 2.2-metre telescope. The northern part of NGC 247’s disc hosts an apparent void, a gap in the usual swarm of stars and H II regions that spans almost a third of the galaxy’s total length. There are stars within this void, but they are quite different from those around it. They are significantly older, and as a result much fainter and redder. This indicates that the star formation taking place across most of the galaxy’s disc has somehow been arrested in the void region, and has not taken place for around one billion years. Although astronomers are still unsure how the void formed, recent studies suggest it might have been caused by gravitational interactions with part of another galaxy.

Expert System for Computer-assisted Annotation of MS/MS Spectra*

PubMed Central

Neuhauser, Nadin; Michalski, Annette; Cox, Jürgen; Mann, Matthias

2012-01-01

An important step in mass spectrometry (MS)-based proteomics is the identification of peptides by their fragment spectra. Regardless of the identification score achieved, almost all tandem-MS (MS/MS) spectra contain remaining peaks that are not assigned by the search engine. These peaks may be explainable by human experts but the scale of modern proteomics experiments makes this impractical. In computer science, Expert Systems are a mature technology to implement a list of rules generated by interviews with practitioners. We here develop such an Expert System, making use of literature knowledge as well as a large body of high mass accuracy and pure fragmentation spectra. Interestingly, we find that even with high mass accuracy data, rule sets can quickly become too complex, leading to over-annotation. Therefore we establish a rigorous false discovery rate, calculated by random insertion of peaks from a large collection of other MS/MS spectra, and use it to develop an optimized knowledge base. This rule set correctly annotates almost all peaks of medium or high abundance. For high resolution HCD data, median intensity coverage of fragment peaks in MS/MS spectra increases from 58% by search engine annotation alone to 86%. The resulting annotation performance surpasses a human expert, especially on complex spectra such as those of larger phosphorylated peptides. Our system is also applicable to high resolution collision-induced dissociation data. It is available both as a part of MaxQuant and via a webserver that only requires an MS/MS spectrum and the corresponding peptides sequence, and which outputs publication quality, annotated MS/MS spectra (www.biochem.mpg.de/mann/tools/). It provides expert knowledge to beginners in the field of MS-based proteomics and helps advanced users to focus on unusual and possibly novel types of fragment ions. PMID:22888147

A general concept for consistent documentation of computational analyses

PubMed Central

Müller, Fabian; Nordström, Karl; Lengauer, Thomas; Schulz, Marcel H.

2015-01-01

The ever-growing amount of data in the field of life sciences demands standardized ways of high-throughput computational analysis. This standardization requires a thorough documentation of each step in the computational analysis to enable researchers to understand and reproduce the results. However, due to the heterogeneity in software setups and the high rate of change during tool development, reproducibility is hard to achieve. One reason is that there is no common agreement in the research community on how to document computational studies. In many cases, simple flat files or other unstructured text documents are provided by researchers as documentation, which are often missing software dependencies, versions and sufficient documentation to understand the workflow and parameter settings. As a solution we suggest a simple and modest approach for documenting and verifying computational analysis pipelines. We propose a two-part scheme that defines a computational analysis using a Process and an Analysis metadata document, which jointly describe all necessary details to reproduce the results. In this design we separate the metadata specifying the process from the metadata describing an actual analysis run, thereby reducing the effort of manual documentation to an absolute minimum. Our approach is independent of a specific software environment, results in human readable XML documents that can easily be shared with other researchers and allows an automated validation to ensure consistency of the metadata. Because our approach has been designed with little to no assumptions concerning the workflow of an analysis, we expect it to be applicable in a wide range of computational research fields. Database URL: http://deep.mpi-inf.mpg.de/DAC/cmds/pub/pyvalid.zip PMID:26055099

The nebula around the post-AGB star 89 Herculis

NASA Astrophysics Data System (ADS)

Bujarrabal, V.; van Winckel, H.; Neri, R.; Alcolea, J.; Castro-Carrizo, A.; Deroo, P.

2007-06-01

Aims:We aim to study the structure of the nebula around the post-AGB, binary star 89 Her. The presence of a rotating disk around this star had been proposed but not been yet confirmed by observations. Methods: We present high-resolution PdBI maps of CO J=2-1 and 1-0. Properties of the nebula are directly derived from the data and model fitting. We also present N-band interferometric data on the extent of the hot dust emission, obtained with the VLTI. Results: Two nebular components are found: (a) an extended hour-glass-like structure, with expansion velocities of 7 km s-1 and a total mass 3× 10-3 M{⊙}, and (b) an unresolved very compact component, smaller than 0.4 arcsec and with a low total velocity dispersion of 5 km s-1. We cannot determine the velocity field in the compact component, but we argue that it can hardly be in expansion, since this would require too recent and too sudden an ejection of mass. On the other hand, assuming that this component is a Keplerian disk, we derive disk properties that are compatible with expectations for such a structure; in particular, the size of the rotating gas disk should be very similar to the extent of the hot dust component from our VLTI data. Assuming that the equator of the extended nebula coincides with the binary orbital plane, we provide new results on the companion star mass and orbit. Based on observations carried out with the IRAM Plateau de Bure Interferometer, as well as on observations of the Belgian Guaranteed time on VISA (ESO). IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain).

Characterization and Prediction of Protein Phosphorylation Hotspots in Arabidopsis thaliana.

PubMed

Christian, Jan-Ole; Braginets, Rostyslav; Schulze, Waltraud X; Walther, Dirk

2012-01-01

The regulation of protein function by modulating the surface charge status via sequence-locally enriched phosphorylation sites (P-sites) in so called phosphorylation "hotspots" has gained increased attention in recent years. We set out to identify P-hotspots in the model plant Arabidopsis thaliana. We analyzed the spacing of experimentally detected P-sites within peptide-covered regions along Arabidopsis protein sequences as available from the PhosPhAt database. Confirming earlier reports (Schweiger and Linial, 2010), we found that, indeed, P-sites tend to cluster and that distributions between serine and threonine P-sites to their respected closest next P-site differ significantly from those for tyrosine P-sites. The ability to predict P-hotspots by applying available computational P-site prediction programs that focus on identifying single P-sites was observed to be severely compromised by the inevitable interference of nearby P-sites. We devised a new approach, named HotSPotter, for the prediction of phosphorylation hotspots. HotSPotter is based primarily on local amino acid compositional preferences rather than sequence position-specific motifs and uses support vector machines as the underlying classification engine. HotSPotter correctly identified experimentally determined phosphorylation hotspots in A. thaliana with high accuracy. Applied to the Arabidopsis proteome, HotSPotter-predicted 13,677 candidate P-hotspots in 9,599 proteins corresponding to 7,847 unique genes. Hotspot containing proteins are involved predominantly in signaling processes confirming the surmised modulating role of hotspots in signaling and interaction events. Our study provides new bioinformatics means to identify phosphorylation hotspots and lays the basis for further investigating novel candidate P-hotspots. All phosphorylation hotspot annotations and predictions have been made available as part of the PhosPhAt database at http://phosphat.mpimp-golm.mpg.de.

Efficient PRNP deletion in bovine genome using gene-editing technologies in bovine cells

PubMed Central

Choi, WooJae; Kim, Eunji; Yum, Soo-Young; Lee, ChoongIl; Lee, JiHyun; Moon, JoonHo; Ramachandra, Sisitha; Malaweera, Buddika Oshadi; Cho, JongKi; Kim, Jin-Soo; Kim, SeokJoong; Jang, Goo

2015-01-01

abstract Even though prion (encoded by the PRNP gene) diseases like bovine spongiform encephalopathy (BSE) are fatal neurodegenerative diseases in cattle, their study via gene deletion has been limited due to the absence of cell lines or mutant models. In this study, we aim to develop an immortalized fibroblast cell line in which genome-engineering technology can be readily applied to create gene-modified clones for studies. To this end, this study is designed to 1) investigate the induction of primary fibroblasts to immortalization by introducing Bmi-1 and hTert genes; 2) investigate the disruption of the PRNP in those cells; and 3) evaluate the gene expression and embryonic development using knockout (KO) cell lines. Primary cells from a male neonate were immortalized with Bmi-1and hTert. Immortalized cells were cultured for more than 180 days without any changes in their doubling time and morphology. Furthermore, to knockout the PRNP gene, plasmids that encode transcription activator-like effector nuclease (TALEN) pairs were transfected into the cells, and transfected single cells were propagated. Mutated clonal cell lines were confirmed by T7 endonuclease I assay and sequencing. Four knockout cell lines were used for somatic cell nuclear transfer (SCNT), and the resulting embryos were developed to the blastocyst stage. The genes (CSNK2A1, FAM64A, MPG and PRND) were affected after PRNP disruption in immortalized cells. In conclusion, we established immortalized cattle fibroblasts using Bmi-1 and hTert genes, and used TALENs to knockout the PRNP gene in these immortalized cells. The efficient PRNP KO is expected to be a useful technology to develop our understanding of in vitro prion protein functions in cattle. PMID:26217959

Modeling of hybrid vehicle fuel economy and fuel engine efficiency

NASA Astrophysics Data System (ADS)

Wu, Wei

"Near-CV" (i.e., near-conventional vehicle) hybrid vehicles, with an internal combustion engine, and a supplementary storage with low-weight, low-energy but high-power capacity, are analyzed. This design avoids the shortcoming of the "near-EV" and the "dual-mode" hybrid vehicles that need a large energy storage system (in terms of energy capacity and weight). The small storage is used to optimize engine energy management and can provide power when needed. The energy advantage of the "near-CV" design is to reduce reliance on the engine at low power, to enable regenerative braking, and to provide good performance with a small engine. The fuel consumption of internal combustion engines, which might be applied to hybrid vehicles, is analyzed by building simple analytical models that reflect the engines' energy loss characteristics. Both diesel and gasoline engines are modeled. The simple analytical models describe engine fuel consumption at any speed and load point by describing the engine's indicated efficiency and friction. The engine's indicated efficiency and heat loss are described in terms of several easy-to-obtain engine parameters, e.g., compression ratio, displacement, bore and stroke. Engine friction is described in terms of parameters obtained by fitting available fuel measurements on several diesel and spark-ignition engines. The engine models developed are shown to conform closely to experimental fuel consumption and motored friction data. A model of the energy use of "near-CV" hybrid vehicles with different storage mechanism is created, based on simple algebraic description of the components. With powertrain downsizing and hybridization, a "near-CV" hybrid vehicle can obtain a factor of approximately two in overall fuel efficiency (mpg) improvement, without considering reductions in the vehicle load.

Distortion-free diffusion tensor imaging for evaluation of lumbar nerve roots: Utility of direct coronal single-shot turbo spin-echo diffusion sequence.

PubMed

Sakai, Takayuki; Doi, Kunio; Yoneyama, Masami; Watanabe, Atsuya; Miyati, Tosiaki; Yanagawa, Noriyuki

2018-06-01

Diffusion tensor imaging (DTI) based on a single-shot echo planer imaging (EPI-DTI) is an established method that has been used for evaluation of lumbar nerve disorders in previous studies, but EPI-DTI has problems such as a long acquisition time, due to a lot of axial slices, and geometric distortion. To solve these problems, we attempted to apply DTI based on a single-shot turbo spin echo (TSE-DTI) with direct coronal acquisition. Our purpose in this study was to investigate whether TSE-DTI may be more useful for evaluation of lumbar nerve disorders than EPI-DTI. First, lumbar nerve roots of five healthy volunteers were evaluated for optimization of imaging parameters with TSE-DTI including b-values and the number of motion proving gradient (MPG) directions. Subsequently, optimized TSE-DTI was quantitatively compared with conventional EPI-DTI by using fractional anisotropy (FA) values and visual scores in subjective visual evaluation of tractography. Lumbar nerve roots of six patients, who had unilateral neurologic symptoms in one leg, were evaluated by the optimized TSE-DTI. TSE-DTI with b-value of 400 s/mm 2 and 32 diffusion-directions could reduce the image distortion compared with EPI-DTI, and showed that the average FA values on the symptomatic side for six patients were significantly lower than those on the non-symptomatic side (P < 0.05). Tractography with TSE-DTI might show damaged areas of lumbar nerve roots without severe image distortion. TSE-DTI might improve the reproducibility in measurements of FA values for quantification of a nerve disorder, and would become a useful tool for diagnosis of low back pain. Copyright © 2018 Elsevier Inc. All rights reserved.

Hybrid vehicle system studies and optimized hydrogen engine design

NASA Astrophysics Data System (ADS)

Smith, J. R.; Aceves, S.

1995-04-01

We have done system studies of series hydrogen hybrid automobiles that approach the PNGV design goal of 34 km/liter (80 mpg), for 384 km (240 mi) and 608 km (380 mi) ranges. Our results indicate that such a vehicle appears feasible using an optimized hydrogen engine. We have evaluated the impact of various on-board storage options on fuel economy. Experiments in an available engine at the Sandia CRF demonstrated NO(x) emissions of 10 to 20 ppM at an equivalence ratio of 0.4, rising to about 500 ppm at 0.5 equivalence ratio using neat hydrogen. Hybrid simulation studies indicate that exhaust NO(x) concentrations must be less than 180 ppM to meet the 0.2 g/mile ULEV or Federal Tier II emissions regulations. LLNL has designed and fabricated a first generation optimized hydrogen engine head for use on an existing Onan engine. This head features 15:1 compression ratio, dual ignition, water cooling, two valves and open quiescent combustion chamber to minimize heat transfer losses. Initial testing shows promise of achieving an indicated efficiency of nearly 50% and emissions of less than 100 ppM NO(x). Hydrocarbons and CO are to be measured, but are expected to be very low since their only source is engine lubricating oil. A successful friction reduction program on the Onan engine should result in a brake thermal efficiency of about 42% compared to today's gasoline engines of 32%. Based on system studies requirements, the next generation engine will be about 2 liter displacement and is projected to achieve 46% brake thermal efficiency with outputs of 15 kW for cruise and 40 kW for hill climb.

MethVisual - visualization and exploratory statistical analysis of DNA methylation profiles from bisulfite sequencing.

PubMed

Zackay, Arie; Steinhoff, Christine

2010-12-15

Exploration of DNA methylation and its impact on various regulatory mechanisms has become a very active field of research. Simultaneously there is an arising need for tools to process and analyse the data together with statistical investigation and visualisation. MethVisual is a new application that enables exploratory analysis and intuitive visualization of DNA methylation data as is typically generated by bisulfite sequencing. The package allows the import of DNA methylation sequences, aligns them and performs quality control comparison. It comprises basic analysis steps as lollipop visualization, co-occurrence display of methylation of neighbouring and distant CpG sites, summary statistics on methylation status, clustering and correspondence analysis. The package has been developed for methylation data but can be also used for other data types for which binary coding can be inferred. The application of the package, as well as a comparison to existing DNA methylation analysis tools and its workflow based on two datasets is presented in this paper. The R package MethVisual offers various analysis procedures for data that can be binarized, in particular for bisulfite sequenced methylation data. R/Bioconductor has become one of the most important environments for statistical analysis of various types of biological and medical data. Therefore, any data analysis within R that allows the integration of various data types as provided from different technological platforms is convenient. It is the first and so far the only specific package for DNA methylation analysis, in particular for bisulfite sequenced data available in R/Bioconductor enviroment. The package is available for free at http://methvisual.molgen.mpg.de/ and from the Bioconductor Consortium http://www.bioconductor.org.

MethVisual - visualization and exploratory statistical analysis of DNA methylation profiles from bisulfite sequencing

PubMed Central

2010-01-01

Background Exploration of DNA methylation and its impact on various regulatory mechanisms has become a very active field of research. Simultaneously there is an arising need for tools to process and analyse the data together with statistical investigation and visualisation. Findings MethVisual is a new application that enables exploratory analysis and intuitive visualization of DNA methylation data as is typically generated by bisulfite sequencing. The package allows the import of DNA methylation sequences, aligns them and performs quality control comparison. It comprises basic analysis steps as lollipop visualization, co-occurrence display of methylation of neighbouring and distant CpG sites, summary statistics on methylation status, clustering and correspondence analysis. The package has been developed for methylation data but can be also used for other data types for which binary coding can be inferred. The application of the package, as well as a comparison to existing DNA methylation analysis tools and its workflow based on two datasets is presented in this paper. Conclusions The R package MethVisual offers various analysis procedures for data that can be binarized, in particular for bisulfite sequenced methylation data. R/Bioconductor has become one of the most important environments for statistical analysis of various types of biological and medical data. Therefore, any data analysis within R that allows the integration of various data types as provided from different technological platforms is convenient. It is the first and so far the only specific package for DNA methylation analysis, in particular for bisulfite sequenced data available in R/Bioconductor enviroment. The package is available for free at http://methvisual.molgen.mpg.de/ and from the Bioconductor Consortium http://www.bioconductor.org. PMID:21159174

VizieR Online Data Catalog: Optical transit light curves of WASP-57 (Southworth+, 2015)

NASA Astrophysics Data System (ADS)

Southworth, J.; Mancini, L.; Tregloan-Reed, J.; Calchi Novati, S.; Ciceri, S.; D'Ago, G.; Delrez, L.; Dominik, M.; Evans, D. F.; Gillon, M.; Jehin, E.; Jorgensen, U. G.; Haugbolle, T.; Lendl, M.; Arena, C.; Barbieri, L.; Barbieri, M.; Corfini, G.; Lopresti, C.; Marchini, A.; Marino, G.; Alsubai, K. A.; Bozza, V.; Bramich, D. M.; Figuera Jaimes, R.; Hinse, T. C.; Henning, Th.; Hundertmark, M.; Juncher, D.; Korhonen, H.; Popovas, A.; Rabus, M.; Rahvar, S.; Schmidt, R. W.; Skottfelt, J.; Snodgrass, C.; Starkey, D.; Surdej, J.; Wertz, O.

2018-01-01

Two complete transits of WASP-57 were observed using the 1.54 m Danish Telescope and DFOSC instrument at ESO La Silla, Chile (see Dominik et al. 2010AN....331..671D), on the dates 2014/05/18 and 2014/06/24. Both transits were obtained through a Bessell R filter. The transit on 2014/06/24 observed with DFOSC was also monitored using GROND (Greiner et al. 2008PASP..120..405G) mounted on the MPG 2.2 m telescope at La Silla, Chile. GROND was used to obtain light curves simultaneously in four passbands, which approximate the SDSS g, r, i and z bands. We observed WASP-57 on the night of 2012/05/10 using the BUSCA instrument on the 2.2 m telescope at Calar Alto Astronomical Observatory. BUSCA is capable of observing simultaneously in four passbands, for which we chose Gunn u, g, r and z. One transit of WASP-57 was observed on 2012/04/01 with EulerCam, using the same methods as for the EulerCam transit in Faedi et al. (2013, J/A+A/551/A73). We obtained 212 images through a Gunn r filter, without applying a defocus to the instrument. Two transits of WASP-57 were observed on 2012/03/15 and 2012/04/01 using the 0.6 m TRAPPIST robotic telescope located at La Silla (Gillon et al. 2011EPJWC..1106002G; Jehin et al. 2011Msngr.145....2J). Images were obtained with a slight defocus and through a blue-blocking filter that has a transmittance greater than 90 per cent from 500 nm to beyond 1000 nm. (1 data file).

A study of the C3H2 isomers and isotopologues: first interstellar detection of HDCCC

NASA Astrophysics Data System (ADS)

Spezzano, S.; Gupta, H.; Brünken, S.; Gottlieb, C. A.; Caselli, P.; Menten, K. M.; Müller, H. S. P.; Bizzocchi, L.; Schilke, P.; McCarthy, M. C.; Schlemmer, S.

2016-02-01

The partially deuterated linear isomer HDCCC of the ubiquitous cyclic carbene (c-C3H2) was observed in the starless cores TMC-1C and L1544 at 96.9 GHz, and a confirming line was observed in TMC-1 at 19.38 GHz. To aid the identification in these narrow line sources, four centimetre-wave rotational transitions (two in the previously reported Ka = 0 ladder and two new ones in the Ka = 1 ladder) and 23 transitions in the millimetre band between 96 and 272 GHz were measured in high-resolution laboratory spectra. Ten spectroscopic constants in a standard asymmetric top Hamiltonian allow the main transitions of astronomical interest in the Ka ≤ 3 rotational ladders to be calculated to within 0.1 km s-1 in radial velocity up to 400 GHz. Conclusive identification of the two astronomical lines of HDCCC was provided by the VLSR, which is the same as for the normal isotopic species (H2CCC) in the three narrow line sources. In these sources, deuterium fractionation in singly substituted H2CCC (HDCCC/H2CCC ~4-19%) is comparable to that in c-C3H2 (c-C3H2/c-C3HD ~5-17%) and similarly in doubly deuterated c-C3H2 (c-C3D2/c-C3HD ~3-17%), implying that the efficiency of the deuteration processes in the H2CCC and c-C3H2 isomers are comparable in dark clouds. Based on observations carried out with the IRAM 30 m Telescope. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain).

The Dusty Disc of NGC 247

NASA Astrophysics Data System (ADS)

2011-03-01

This image of NGC 247, taken by the Wide Field Imager on the MPG/ESO 2.2-metre telescope at ESO's La Silla Observatory in Chile, reveals the fine details of this highly inclined spiral galaxy and its rich backdrop. Astronomers say this highly tilted orientation, when viewed from Earth, explains why the distance to this prominent galaxy was previously overestimated. The spiral galaxy NGC 247 is one of the closest spiral galaxies of the southern sky. In this new view from the Wide Field Imager on the MPG/ESO 2.2-metre telescope in Chile large numbers of the galaxy's component stars are clearly resolved and many glowing pink clouds of hydrogen, marking regions of active star formation, can be made out in the loose and ragged spiral arms. NGC 247 is part of the Sculptor Group, a collection of galaxies associated with the Sculptor Galaxy (NGC 253, also shown in eso0902 and eso1025). This is the nearest group of galaxies to our Local Group, which includes the Milky Way, but putting a precise value on such celestial distances is inherently difficult. To measure the distance from the Earth to a nearby galaxy, astronomers have to rely on a type of variable star called a Cepheid to act as a distance marker. Cepheids are very luminous stars, whose brightness varies at regular intervals. The time taken for the star to brighten and fade can be plugged into a simple mathematical relation that gives its intrinsic brightness. When compared with the measured brightness this gives the distance. However, this method isn't foolproof, as astronomers think this period-luminosity relationship depends on the composition of the Cepheid. Another problem arises from the fact that some of the light from a Cepheid may be absorbed by dust en route to Earth, making it appear fainter, and therefore further away than it really is. This is a particular problem for NGC 247 with its highly inclined orientation, as the line of sight to the Cepheids passes through the galaxy's dusty disc. However, a team of astronomers is currently looking into the factors that influence these celestial distance markers in a study called the Araucaria Project [1]. The team has already reported that NGC 247 is more than a million light-years closer to the Milky Way than was previously thought, bringing its distance down to just over 11 million light-years. Apart from the main galaxy itself, this view also reveals numerous galaxies shining far beyond NGC 247. In the upper right of the picture three prominent spirals form a line and still further out, far behind them, many more galaxies can be seen, some shining right through the disc of NGC 247. This colour image was created from a large number of monochrome exposures taken through blue, yellow/green and red filters taken over many years. In addition exposures through a filter that isolates the glow from hydrogen gas have also been included and coloured red. The total exposure times per filter were 20 hours, 19 hours, 25 minutes and 35 minutes, respectively. Notes [1] The Araucaria Project is a collaboration between astronomers from institutions in Chile, the United States and Europe. ESO's Very Large Telescope provided data for the project. More information ESO, the European Southern Observatory, is the foremost intergovernmental astronomy organisation in Europe and the world's most productive astronomical observatory. It is supported by 15 countries: Austria, Belgium, Brazil, the Czech Republic, Denmark, France, Finland, Germany, Italy, the Netherlands, Portugal, Spain, Sweden, Switzerland and the United Kingdom. ESO carries out an ambitious programme focused on the design, construction and operation of powerful ground-based observing facilities enabling astronomers to make important scientific discoveries. ESO also plays a leading role in promoting and organising cooperation in astronomical research. ESO operates three unique world-class observing sites in Chile: La Silla, Paranal and Chajnantor. At Paranal, ESO operates the Very Large Telescope, the world's most advanced visible-light astronomical observatory and VISTA, the world's largest survey telescope. ESO is the European partner of a revolutionary astronomical telescope ALMA, the largest astronomical project in existence. ESO is currently planning a 42-metre European Extremely Large optical/near-infrared Telescope, the E-ELT, which will become "the world's biggest eye on the sky".

A gas-rich AGN near the centre of a galaxy cluster at z ~ 1.4

NASA Astrophysics Data System (ADS)

Casasola, V.; Magrini, L.; Combes, F.; Mignano, A.; Sani, E.; Paladino, R.; Fontani, F.

2013-10-01

Context. The formation of the first virialized structures in overdensities dates back to ~9 Gyr ago, i.e. in the redshift range z ~ 1.4-1.6. Some models of structure formation predict that the star formation activity in clusters was high at that epoch, implying large reservoirs of cold molecular gas. Aims: Aiming at finding a trace of this expected high molecular gas content in primeval clusters, we searched for the 12CO(2-1) line emission in the most luminous active galactic nucleus (AGN) of the cluster around the radio galaxy 7C 1756+6520 at z ~ 1.4, one of the farthest spectroscopic confirmed clusters. This AGN, called AGN.1317, is located in the neighbourhood of the central radio galaxy at a projected distance of ~780 kpc. Methods: The IRAM Plateau de Bure Interferometer was used to investigate the molecular gas quantity in AGN.1317, observing the 12CO(2-1) emission line. Results: We detect CO emission in an AGN belonging to a galaxy cluster at z ~ 1.4. We measured a molecular gas mass of 1.1 × 1010M⊙, comparable to that found in submillimeter galaxies. In optical images, AGN.1317 does not seem to be part of a galaxy interaction or merger. We also derived the nearly instantaneous star formation rate (SFR) from Hα flux obtaining a SFR ~ 65 M⊙ yr-1. This suggests that AGN.1317 is actively forming stars and will exhaust its reservoir of cold gas in ~0.2-1.0 Gyr. Based on observations carried out with the IRAM Plateau de Bure Interferometer. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain).Reduced IRAM data is only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/558/A60

Systems level mapping of metabolic complexity in Mycobacterium tuberculosis to identify high-value drug targets.

PubMed

Vashisht, Rohit; Bhat, Ashwini G; Kushwaha, Shreeram; Bhardwaj, Anshu; Brahmachari, Samir K

2014-10-11

The effectiveness of current therapeutic regimens for Mycobacterium tuberculosis (Mtb) is diminished by the need for prolonged therapy and the rise of drug resistant/tolerant strains. This global health threat, despite decades of basic research and a wealth of legacy knowledge, is due to a lack of systems level understanding that can innovate the process of fast acting and high efficacy drug discovery. The enhanced functional annotations of the Mtb genome, which were previously obtained through a crowd sourcing approach was used to reconstruct the metabolic network of Mtb in a bottom up manner. We represent this information by developing a novel Systems Biology Spindle Map of Metabolism (SBSM) and comprehend its static and dynamic structure using various computational approaches based on simulation and design. The reconstructed metabolism of Mtb encompasses 961 metabolites, involved in 1152 reactions catalyzed by 890 protein coding genes, organized into 50 pathways. By accounting for static and dynamic analysis of SBSM in Mtb we identified various critical proteins required for the growth and survival of bacteria. Further, we assessed the potential of these proteins as putative drug targets that are fast acting and less toxic. Further, we formulate a novel concept of metabolic persister genes (MPGs) and compared our predictions with published in vitro and in vivo experimental evidence. Through such analyses, we report for the first time that de novo biosynthesis of NAD may give rise to bacterial persistence in Mtb under conditions of metabolic stress induced by conventional anti-tuberculosis therapy. We propose such MPG's as potential combination of drug targets for existing antibiotics that can improve their efficacy and efficiency for drug tolerant bacteria. The systems level framework formulated by us to identify potential non-toxic drug targets and strategies to circumvent the issue of bacterial persistence can substantially aid in the process of TB drug discovery and translational research.

Multi-material size optimization of a ladder frame chassis

NASA Astrophysics Data System (ADS)

Baker, Michael

The Corporate Average Fuel Economy (CAFE) is an American fuel standard that sets regulations on fuel economy in vehicles. This law ultimately shapes the development and design research for automakers. Reducing the weight of conventional cars offers a way to improve fuel efficiency. This research investigated the optimality of an automobile's ladder frame chassis (LFC) by conducting multi-objective optimization on the LFC in order to reduce the weight of the chassis. The focus of the design and optimization was a ladder frame chassis commonly used for mass production light motor vehicles with an open-top rear cargo area. This thesis is comprised of two major sections. The first looked to perform thickness optimization in the outer walls of the ladder frame. In the second section, many multi-material distributions, including steel and aluminium varieties, were investigated. A simplified model was used to do an initial hand calculation analysis of the problem. This was used to create a baseline validation to compare the theory with the modeling. A CAD model of the LFC was designed. From the CAD model, a finite element model was extracted and joined using weld and bolt connectors. Following this, a linear static analysis was performed to look at displacement and stresses when subjected to loading conditions that simulate harsh driving conditions. The analysis showed significant values of stress and displacement on the ends of the rails, suggesting improvements could be made elsewhere. An optimization scheme was used to find the values of an all steel frame an optimal thickness distribution was found. This provided a 13% weight reduction over the initial model. To advance the analysis a multi-material approach was used to push the weight savings even further. Several material distributions were analyzed and the lightest utilized aluminium in all but the most strenuous subjected components. This enabled a reduction in weight of 15% over the initial model, equivalent to approximately 1 mile per gallon (MPG) in fuel economy.

The Carina Project. VI. The Helium-burning Variable Stars

NASA Astrophysics Data System (ADS)

Coppola, G.; Stetson, P. B.; Marconi, M.; Bono, G.; Ripepi, V.; Fabrizio, M.; Dall'Ora, M.; Musella, I.; Buonanno, R.; Ferraro, I.; Fiorentino, G.; Iannicola, G.; Monelli, M.; Nonino, M.; Pulone, L.; Thévenin, F.; Walker, A. R.

2013-09-01

We present new optical (BVI) time-series data for the evolved variable stars in the Carina dwarf spheroidal galaxy. The quality of the data and the observing strategy allowed us to identify 14 new variable stars. Eight out of the 14 are RR Lyrae (RRL) stars, 4 are Anomalous Cepheids (ACs), and 2 are geometrical variables. Comparison of the period distribution for the entire sample of RRLs with similar distributions in nearby dwarf spheroidal galaxies and in the Large Magellanic Cloud indicates that the old stellar populations in these systems share similar properties. This finding is also supported by the RRL distribution in the Bailey diagram. On the other hand, the period distribution and the Bailey diagram of ACs display significant differences among the above stellar systems. This evidence suggests that the properties of intermediate-age stellar populations might be affected both by environmental effects and structural parameters. We use the BV Period-Wesenheit (PW) relation of RRLs together with evolutionary prescriptions and find a true distance modulus of 20.09 ± 0.07 (intrinsic) ± 0.1 (statistical) mag that agrees quite well with similar estimates available in the literature. We identified four peculiar variables. Taking into account their position in the Bailey diagram and in the BV PW relation, two of them (V14 and V149) appear to be candidate ACs, while two (V158 and V182) might be peculiar RRLs. In particular, the variable V158 has a period and a V-band amplitude very similar to the low-mass RRL—RRLR-02792—recently identified by Pietrzyński et al. in the Galactic bulge. Based on images collected with the MOSAICII camera available at the CTIO 4 m Blanco telescope, La Serena (2003B-0051, 2004B-0227, and 2005B-0092; PI: A. R. Walker) and in part with the WFI available at the 2.2 m MPG/ESO telescope (A064.L-0327) and with images obtained from the ESO/ST-ECF Science Archive Facility.

Evidence of the causal role of human papillomavirus type 58 in an oropharyngeal carcinoma.

PubMed

Baboci, Lorena; Boscolo-Rizzo, Paolo; Holzinger, Dana; Bertorelle, Roberta; Biasini, Lorena; Michel, Angelika; Schmitt, Markus; Spinato, Giacomo; Bussani, Rossana; Alemany, Laia; Tirelli, Giancarlo; Da Mosto, Maria Cristina; Del Mistro, Annarosa; Pawlita, Michael

2013-11-12

Persistent human papillomavirus infection (HPV) is recognized as an important etiologic factor for a subset of head and neck squamous cell carcinomas (SCC), especially those arising from the oropharynx. Whereas HPV16 accounts for the majority of HPV DNA-positive oropharyngeal SCC, infections with other mucosal high-risk HPV types are quite rare and biological data demonstrating their causal involvement are insufficient. Here we present the first case of an oropharyngeal SCC driven by HPV type 58. A 69-year-old Caucasian woman presented with an enlarged and firm left tonsil. A computed tomography scan showed a left tonsillar mass, extending to the soft palate and the glossotonsillar sulcus. The patient underwent extended radical tonsillectomy and ipsilateral selective neck dissection. Pathology confirmed an infiltrating, poorly differentiated SCC of the left tonsil with node metastasis (pT2N1). Adjuvant external beam radiation therapy (60 Grays (Gy)) was administered. After 1 year of follow-up, the patient is well with no evidence of cancer recurrence. HPV analyses of the tumor tissue by BSGP5+/6+ -PCR/MPG, targeting 51 mucosal HPV types, showed single positivity for HPV type 58. Presence of HPV58 E6*I RNA demonstrated biological activity of the virus in the tumor tissue, and presence of serum antibodies to HPV58 oncoproteins E6 and E7 indicated presence of an HPV58-driven cancer. Overexpression of cellular protein p16INK4a and reduced expression of pRb, two cellular markers for HPV-induced cell transformation, were observed. Exons 4-10 of TP53 showed no mutations or polymorphisms. The presence of HPV58 as single HPV infection in combination with a broad variety of direct and indirect markers of HPV transformation provides comprehensive evidence that this oropharyngeal SCC was driven by HPV58.

Intracellular lipid dysregulation interferes with leukocyte function in the ovaries of meat-type hens under unrestricted feed intake.

PubMed

Liu, Zu-Chen; Su, Chia-Ming; Xie, Yi-Lun; Chang, Chai-Ju; Chen, Jiang-Young; Wu, Shu-Wei; Chen, Yu-Hui; Walzem, Rosemary L; Huang, San-Yuan; Chen, Shuen-Ei

2016-04-01

Meat-type Red-feather country hens fed ad libitum (AD-hens) exhibit obesity-associated morbidities and a number of ovarian irregularities. Leukocyte participations in ovarian activities are unstudied in AD-hens. In contrast to feed-restricted hens (R-hens), ovulatory process of the F1 follicle appeared delayed in AD-hens in association with reduced F1 follicle progesterone content, gelatinase A (MMP-2) and collagenase-3 (MMP-13) activities coincident with elevated IL-1β and no production (P<0.05), and increased leukocyte infiltration of inflamed necrotic follicle walls. Extracts of AD-hen F1 follicle walls induced greater leukocyte migration than extracts from F1 follicle wall extracts of R-hens (P<0.05). Co-cultures of granulosa cells with increasing numbers of leukocytes from either AD-hens or R-hens exhibited dose dependent reductions in progesterone production and increases in cell death. AD-hen leukocytes were less proapoptotic than their R counterparts (P<0.05). Granulosa MMP-13 and MMP-2 activities were also suppressed in the co-cultures with heterophils or monocytes in a dose-dependent manner (P<0.05). AD heterophils and R monocytes had a greater inhibitory effect on MMP activities in the co-cultures than their respective counterparts (P<0.05). Both basal and LPS-induced IL-1β secretion and MMP-22 or MMP-2 activities in freshly isolated AD-hen leukocytes were reduced (P<0.05). Exposure of AD or R leukocytes to 0.5mM palmitate impaired IL-1β secretion and MMP-22 or MMP-2 activity. Inhibition of ceramide synthesis with FB1 and ROS production with n-MPG scavenging rescued MMP activity and IL-1β production in palmitate treated heterophils, but exacerbated monocyte suppression. These latter findings suggest that intracellular lipid dysregulation in leukocytes contributes to ovarian dysfunction in AD-hens. Copyright © 2016 Elsevier B.V. All rights reserved.

HATS-43b, HATS-44b, HATS-45b, and HATS-46b: Four Short-period Transiting Giant Planets in the Neptune–Jupiter Mass Range

NASA Astrophysics Data System (ADS)

Brahm, R.; Hartman, J. D.; Jordán, A.; Bakos, G. Á.; Espinoza, N.; Rabus, M.; Bhatti, W.; Penev, K.; Sarkis, P.; Suc, V.; Csubry, Z.; Bayliss, D.; Bento, J.; Zhou, G.; Mancini, L.; Henning, T.; Ciceri, S.; de Val-Borro, M.; Shectman, S.; Crane, J. D.; Arriagada, P.; Butler, P.; Teske, J.; Thompson, I.; Osip, D.; Díaz, M.; Schmidt, B.; Lázár, J.; Papp, I.; Sári, P.

2018-03-01

We report the discovery of four short-period extrasolar planets transiting moderately bright stars from photometric measurements of the HATSouth network coupled to additional spectroscopic and photometric follow-up observations. While the planet masses range from 0.26 to 0.90 {M}{{J}}, the radii are all approximately a Jupiter radii, resulting in a wide range of bulk densities. The orbital period of the planets ranges from 2.7 days to 4.7 days, with HATS-43b having an orbit that appears to be marginally non-circular (e = 0.173 ± 0.089). HATS-44 is notable for having a high metallicity ([{Fe}/{{H}}] = 0.320 ± 0.071). The host stars spectral types range from late F to early K, and all of them are moderately bright (13.3 < V < 14.4), allowing the execution of future detailed follow-up observations. HATS-43b and HATS-46b, with expected transmission signals of 2350 ppm and 1500 ppm, respectively, are particularly well suited targets for atmospheric characterization via transmission spectroscopy. The HATSouth network is operated by a collaboration consisting of Princeton University (PU), the Max Planck Institute für Astronomie (MPIA), the Australian National University (ANU), and the Pontificia Universidad Católica de Chile (PUC). The station at Las Campanas Observatory (LCO) of the Carnegie Institute is operated by PU in conjunction with PUC, the station at the High Energy Spectroscopic Survey (H.E.S.S.) site is operated in conjunction with MPIA, and the station at Siding Spring Observatory (SSO) is operated jointly with ANU. This paper includes data gathered with the MPG 2.2 m and ESO 3.6 m telescopes at the ESO Observatory in La Silla. This paper includes data gathered with the 6.5 meter Magellan Telescopes located at Las Campanas Observatory, Chile.

Globin gene structure in a reptile supports the transpositional model for amniote α- and β-globin gene evolution.

PubMed

Patel, Vidushi S; Ezaz, Tariq; Deakin, Janine E; Graves, Jennifer A Marshall

2010-12-01

The haemoglobin protein, required for oxygen transportation in the body, is encoded by α- and β-globin genes that are arranged in clusters. The transpositional model for the evolution of distinct α-globin and β-globin clusters in amniotes is much simpler than the previously proposed whole genome duplication model. According to this model, all jawed vertebrates share one ancient region containing α- and β-globin genes and several flanking genes in the order MPG-C16orf35-(α-β)-GBY-LUC7L that has been conserved for more than 410 million years, whereas amniotes evolved a distinct β-globin cluster by insertion of a transposed β-globin gene from this ancient region into a cluster of olfactory receptors flanked by CCKBR and RRM1. It could not be determined whether this organisation is conserved in all amniotes because of the paucity of information from non-avian reptiles. To fill in this gap, we examined globin gene organisation in a squamate reptile, the Australian bearded dragon lizard, Pogona vitticeps (Agamidae). We report here that the α-globin cluster (HBK, HBA) is flanked by C16orf35 and GBY and is located on a pair of microchromosomes, whereas the β-globin cluster is flanked by RRM1 on the 3' end and is located on the long arm of chromosome 3. However, the CCKBR gene that flanks the β-globin cluster on the 5' end in other amniotes is located on the short arm of chromosome 5 in P. vitticeps, indicating that a chromosomal break between the β-globin cluster and CCKBR occurred at least in the agamid lineage. Our data from a reptile species provide further evidence to support the transpositional model for the evolution of β-globin gene cluster in amniotes.

Minoxidil sulfate induced the increase in blood-brain tumor barrier permeability through ROS/RhoA/PI3K/PKB signaling pathway.

PubMed

Gu, Yan-ting; Xue, Yi-xue; Wang, Yan-feng; Wang, Jin-hui; Chen, Xia; ShangGuan, Qian-ru; Lian, Yan; Zhong, Lei; Meng, Ying-nan

2013-12-01

Adenosine 5'-triphosphate-sensitive potassium channel (KATP channel) activator, minoxidil sulfate (MS), can selectively increase the permeability of the blood-tumor barrier (BTB); however, the mechanism by which this occurs is still under investigation. Using a rat brain glioma (C6) model, we first examined the expression levels of occludin and claudin-5 at different time points after intracarotid infusion of MS (30 μg/kg/min) by western blotting. Compared to MS treatment for 0 min group, the protein expression levels of occludin and claudin-5 in brain tumor tissue of rats showed no changes within 1 h and began to decrease significantly after 2 h of MS infusion. Based on these findings, we then used an in vitro BTB model and selective inhibitors of diverse signaling pathways to investigate whether reactive oxygen species (ROS)/RhoA/PI3K/PKB pathway play a key role in the process of the increase of BTB permeability induced by MS. The inhibitor of ROS or RhoA or PI3K or PKB significantly attenuated the expression of tight junction (TJ) protein and the increase of the BTB permeability after 2 h of MS treatment. In addition, the significant increases in RhoA activity and PKB phosphorylation after MS administration were observed, which were partly inhibited by N-2-mercaptopropionyl glycine (MPG) or C3 exoenzyme or LY294002 pretreatment. The present study indicates that the activation of signaling cascades involving ROS/RhoA/PI3K/PKB in BTB was required for the increase of BTB permeability induced by MS. Taken together, all of these results suggested that MS might increase BTB permeability in a time-dependent manner by down-regulating TJ protein expression and this effect could be related to ROS/RhoA/PI3K/PKB signal pathway. Copyright © 2013 Elsevier Ltd. All rights reserved.

Bi-Force: large-scale bicluster editing and its application to gene expression data biclustering.

PubMed

Sun, Peng; Speicher, Nora K; Röttger, Richard; Guo, Jiong; Baumbach, Jan

2014-05-01

The explosion of the biological data has dramatically reformed today's biological research. The need to integrate and analyze high-dimensional biological data on a large scale is driving the development of novel bioinformatics approaches. Biclustering, also known as 'simultaneous clustering' or 'co-clustering', has been successfully utilized to discover local patterns in gene expression data and similar biomedical data types. Here, we contribute a new heuristic: 'Bi-Force'. It is based on the weighted bicluster editing model, to perform biclustering on arbitrary sets of biological entities, given any kind of pairwise similarities. We first evaluated the power of Bi-Force to solve dedicated bicluster editing problems by comparing Bi-Force with two existing algorithms in the BiCluE software package. We then followed a biclustering evaluation protocol in a recent review paper from Eren et al. (2013) (A comparative analysis of biclustering algorithms for gene expressiondata. Brief. Bioinform., 14:279-292.) and compared Bi-Force against eight existing tools: FABIA, QUBIC, Cheng and Church, Plaid, BiMax, Spectral, xMOTIFs and ISA. To this end, a suite of synthetic datasets as well as nine large gene expression datasets from Gene Expression Omnibus were analyzed. All resulting biclusters were subsequently investigated by Gene Ontology enrichment analysis to evaluate their biological relevance. The distinct theoretical foundation of Bi-Force (bicluster editing) is more powerful than strict biclustering. We thus outperformed existing tools with Bi-Force at least when following the evaluation protocols from Eren et al. Bi-Force is implemented in Java and integrated into the open source software package of BiCluE. The software as well as all used datasets are publicly available at http://biclue.mpi-inf.mpg.de. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

A new benchmark T8-9 brown dwarf and a couple of new mid-T dwarfs from the UKIDSS DR5+ LAS

NASA Astrophysics Data System (ADS)

Goldman, B.; Marsat, S.; Henning, T.; Clemens, C.; Greiner, J.

2010-06-01

Benchmark brown dwarfs are those objects for which fiducial constraints are available, including effective temperature, parallax, age and metallicity. We searched for new cool brown dwarfs in 186deg2 of the new area covered by the data release DR5+ of the UKIRT Deep Infrared Sky Survey (UKIDSS) Large Area Survey. Follow-up optical and near-infrared broad-band photometry, and methane imaging of four promising candidates, revealed three objects with distinct methane absorption, typical of mid- to late-T dwarfs and one possibly T4 dwarf. The latest-type object, classified as T8-9, shares its large proper motion with Ross 458 (BD+13o2618), an active M0.5 binary which is 102arcsec away, forming a hierarchical low-mass star+brown dwarf system. Ross 458C has an absolute J-band magnitude of 16.4, and seems overluminous, particularly in the K band, compared to similar field brown dwarfs. We estimate the age of the system to be less than 1Gyr, and its mass to be as low as 14 Jupiter masses for the age of 1Gyr. At 11.4pc, this new late-T benchmark dwarf is a promising target to constrain the evolutionary and atmospheric models of very low-mass brown dwarfs. We present proper motion measurements for our targets and for 13 known brown dwarfs. Two brown dwarfs have velocities typical of the thick disc and may be old brown dwarfs. Based on observations collected at the German-Spanish Astronomical Center, Calar Alto, jointly operated by the Max-Planck Institut für Astronomie Heidelberg and the Instituto de Astrofísica de Andaluc'a (CSIC), and on observations made with ESO/MPG Telescope at the La Silla Observatory under programme ID 081.A-9012 and 081.A-9014. E-mail: goldman@mpia.de

The Metallicity Dependence of the CO → H2 Conversion Factor in z >= 1 Star-forming Galaxies

NASA Astrophysics Data System (ADS)

Genzel, R.; Tacconi, L. J.; Combes, F.; Bolatto, A.; Neri, R.; Sternberg, A.; Cooper, M. C.; Bouché, N.; Bournaud, F.; Burkert, A.; Comerford, J.; Cox, P.; Davis, M.; Förster Schreiber, N. M.; Garcia-Burillo, S.; Gracia-Carpio, J.; Lutz, D.; Naab, T.; Newman, S.; Saintonge, A.; Shapiro, K.; Shapley, A.; Weiner, B.

2012-02-01

We use the first systematic samples of CO millimeter emission in z >= 1 ''main-sequence'' star-forming galaxies to study the metallicity dependence of the conversion factor αCO, from CO line luminosity to molecular gas mass. The molecular gas depletion rate inferred from the ratio of the star formation rate (SFR) to CO luminosity, is ~1 Gyr-1 for near-solar metallicity galaxies with stellar masses above M S ~ 1011 M ⊙. In this regime, the depletion rate does not vary more than a factor of two to three as a function of molecular gas surface density or redshift between z ~ 0 and 2. Below M S the depletion rate increases rapidly with decreasing metallicity. We argue that this trend is not caused by starburst events, by changes in the physical parameters of the molecular clouds, or by the impact of the fundamental-metallicity-SFR-stellar mass relation. A more probable explanation is that the conversion factor is metallicity dependent and that star formation can occur in ''CO-dark'' gas. The trend is also expected theoretically from the effect of enhanced photodissociation of CO by ultraviolet radiation at low metallicity. From the available z ~ 0 and z ~ 1-3 samples we constrain the slope of the log(αCO)-log (metallicity) relation to range between -1 and -2, fairly insensitive to the assumed slope of the gas-SFR relation. Because of the lower metallicities near the peak of the galaxy formation activity at z ~ 1-2 compared to z ~ 0, we suggest that molecular gas masses estimated from CO luminosities have to be substantially corrected upward for galaxies below M S. Based on observations with the Plateau de Bure millimetre interferometer, operated by the Institute for Radio Astronomy in the Millimetre Range (IRAM), which is funded by a partnership of INSU/CNRS (France), MPG (Germany), and IGN (Spain).

ISMB/ECCB 2009 Stockholm

PubMed Central

Sagot, Marie-France; McKay, B.J. Morrison; Myers, Gene

2009-01-01

The International Society for Computational Biology (ISCB; http://www.iscb.org) presents the Seventeenth Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), organized jointly with the Eighth Annual European Conference on Computational Biology (ECCB; http://bioinf.mpi-inf.mpg.de/conferences/eccb/eccb.htm), in Stockholm, Sweden, 27 June to 2 July 2009. The organizers are putting the finishing touches on the year's premier computational biology conference, with an expected attendance of 1400 computer scientists, mathematicians, statisticians, biologists and scientists from other disciplines related to and reliant on this multi-disciplinary science. ISMB/ECCB 2009 (http://www.iscb.org/ismbeccb2009/) follows the framework introduced at the ISMB/ECCB 2007 (http://www.iscb.org/ismbeccb2007/) in Vienna, and further refined at the ISMB 2008 (http://www.iscb.org/ismb2008/) in Toronto; a framework developed to specifically encourage increased participation from often under-represented disciplines at conferences on computational biology. During the main ISMB conference dates of 29 June to 2 July, keynote talks from highly regarded scientists, including ISCB Award winners, are the featured presentations that bring all attendees together twice a day. The remainder of each day offers a carefully balanced selection of parallel sessions to choose from: proceedings papers, special sessions on emerging topics, highlights of the past year's published research, special interest group meetings, technology demonstrations, workshops and several unique sessions of value to the broad audience of students, faculty and industry researchers. Several hundred posters displayed for the duration of the conference has become a standard of the ISMB and ECCB conference series, and an extensive commercial exhibition showcases the latest bioinformatics publications, software, hardware and services available on the market today. The main conference is preceded by 2 days of Special Interest Group (SIG) and Satellite meetings running in parallel to the fifth Student Council Symposium on 27 June, and in parallel to Tutorials on 28 June. All scientific sessions take place at the Stockholmsmässan/Stockholm International Fairs conference and exposition facility. Contact: bj@iscb.org PMID:19447790

Characterization of the genome and transcriptome of the blue tit Cyanistes caeruleus: polymorphisms, sex-biased expression and selection signals.

PubMed

Mueller, Jakob C; Kuhl, Heiner; Timmermann, Bernd; Kempenaers, Bart

2016-03-01

Decoding genomic sequences and determining their variation within populations has potential to reveal adaptive processes and unravel the genetic basis of ecologically relevant trait variation within a species. The blue tit Cyanistes caeruleus--a long-time ecological model species--has been used to investigate fitness consequences of variation in mating and reproductive behaviour. However, very little is known about the underlying genetic changes due to natural and sexual selection in the genome of this songbird. As a step to bridge this gap, we assembled the first draft genome of a single blue tit, mapped the transcriptome of five females and five males to this reference, identified genomewide variants and performed sex-differential expression analysis in the gonads, brain and other tissues. In the gonads, we found a high number of sex-biased genes, and of those, a similar proportion were sex-limited (genes only expressed in one sex) in males and females. However, in the brain, the proportion of female-limited genes within the female-biased gene category (82%) was substantially higher than the proportion of male-limited genes within the male-biased category (6%). This suggests a predominant on-off switching mechanism for the female-limited genes. In addition, most male-biased genes were located on the Z-chromosome, indicating incomplete dosage compensation for the male-biased genes. We called more than 500,000 SNPs from the RNA-seq data. Heterozygote detection in the single reference individual was highly congruent between DNA-seq and RNA-seq calling. Using information from these polymorphisms, we identified potential selection signals in the genome. We list candidate genes which can be used for further sequencing and detailed selection studies, including genes potentially related to meiotic drive evolution. A public genome browser of the blue tit with the described information is available at http://public-genomes-ngs.molgen.mpg.de. © 2015 John Wiley & Sons Ltd.

Discovery of interstellar ketenyl (HCCO), a surprisingly abundant radical

NASA Astrophysics Data System (ADS)

Agúndez, Marcelino; Cernicharo, José; Guélin, Michel

2015-05-01

We conducted radioastronomical observations of 9 dark clouds with the IRAM 30 m telescope. We present the first identification in space of the ketenyl radical (HCCO) toward the starless core Lupus-1A and the molecular cloud L483 and the detection of the related molecules ketene (H2CCO) and acetaldehyde (CH3CHO) in these two sources and 3 additional dark clouds. We also report the detection of the formyl radical (HCO) in the 9 targeted sources and of propylene (CH2CHCH3) in 4 of the observed sources, which significantly extends the number of dark clouds where these molecules are known to be present. We have derived a beam-averaged column density of HCCO of ~5 × 1011 cm-2 in both Lupus-1A and L483, which means that the ketenyl radical is just ~10 times less abundant than ketene in these sources. The non-negligible abundance of HCCO found implies that there must be a powerful formation mechanism able to counterbalance the efficient destruction of this radical through reactions with neutral atoms. The column densities derived for HCO, (0.5-2.7) ×1012 cm-2, and CH2CHCH3, (1.9-4-2) ×1013 cm-2, are remarkably uniform across the sources where these species are detected, confirming their ubiquity in dark clouds. Gas phase chemical models of cold dark clouds can reproduce the observed abundances of HCO, but cannot explain the presence of HCCO in Lupus-1A and L483 and the high abundances derived for propylene. The chemistry of cold dark clouds needs to be revised in light of these new observational results. Based on observations carried out with the IRAM 30 m Telescope. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain).Tables 3-6 are available in electronic form at http://www.aanda.org

Sensitive survey for 13CO, CN, H2CO, and SO in the disks of T Tauri and Herbig Ae stars. II. Stars in ρ Ophiuchi and upper Scorpius

NASA Astrophysics Data System (ADS)

Reboussin, L.; Guilloteau, S.; Simon, M.; Grosso, N.; Wakelam, V.; Di Folco, E.; Dutrey, A.; Piétu, V.

2015-06-01

Aims: We attempt to determine the molecular composition of disks around young low-mass stars in the ρ Oph region and to compare our results with a similar study performed in the Taurus-Auriga region. Methods: We used the IRAM 30 m telescope to perform a sensitive search for CN N = 2-1 in 29 T Tauri stars located in the ρ Oph and upper Scorpius regions. 13CO J = 2-1 is observed simultaneously to provide an indication of the level of confusion with the surrounding molecular cloud. The bandpass also contains two transitions of ortho-H2CO, one of SO, and the C17O J = 2-1 line, which provides complementary information on the nature of the emission. Results: Contamination by molecular cloud in 13CO and even C17O is ubiquitous. The CN detection rate appears to be lower than for the Taurus region, with only four sources being detected (three are attributable to disks). H2CO emission is found more frequently, but appears in general to be due to the surrounding cloud. The weaker emission than in Taurus may suggest that the average disk size in the ρ Oph region is smaller than in the Taurus cloud. Chemical modeling shows that the somewhat higher expected disk temperatures in ρ Oph play a direct role in decreasing the CN abundance. Warmer dust temperatures contribute to convert CN into less volatile forms. Conclusions: In such a young region, CN is no longer a simple, sensitive tracer of disks, and observations with other tracers and at high enough resolution with ALMA are required to probe the gas disk population. Based on observations carried out with the IRAM 30-m telescope. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain).Appendix A is available in electronic form at http://www.aanda.org

Low-energy Shock Wave Therapy Ameliorates Erectile Dysfunction in a Pelvic Neurovascular Injuries Rat Model.

PubMed

Li, Huixi; Matheu, Melanie P; Sun, Fionna; Wang, Lin; Sanford, Melissa T; Ning, Hongxiu; Banie, Lia; Lee, Yung-Chin; Xin, Zhongcheng; Guo, Yinglu; Lin, Guiting; Lue, Tom F

2016-01-01

Erectile dysfunction (ED) caused by pelvic injuries is a common complication of civil and battlefield trauma with multiple neurovascular factors involved, and no effective therapeutic approach is available. To test the effect and mechanisms of low-energy shock wave (LESW) therapy in a rat ED model induced by pelvic neurovascular injuries. Thirty-two male Sprague-Dawley rats injected with 5-ethynyl-2'-deoxyuridine (EdU) at newborn were divided into 4 groups: sham surgery (Sham), pelvic neurovascular injury by bilateral cavernous nerve injury and internal pudendal bundle injury (PVNI), PVNI treated with LESW at low energy (Low), and PVNI treated with LESW at high energy (High). After LESW treatment, rats underwent erectile function measurement and the tissues were harvested for histologic and molecular study. To examine the effect of LESW on Schwann cells, in vitro studies were conducted. The intracavernous pressure (ICP) measurement, histological examination, and Western blot (WB) were conducted. Cell cycle, Schwann cell activation-related markers were examined in in vitro experiments. LESW treatment improves erectile function in a rat model of pelvic neurovascular injury by leading to angiogenesis, tissue restoration, and nerve generation with more endogenous EdU(+) progenitor cells recruited to the damaged area and activation of Schwann cells. LESW facilitates more complete re-innervation of penile tissue with regeneration of neuronal nitric oxide synthase (nNOS)-positive nerves from the MPG to the penis. In vitro experiments demonstrated that LESW has a direct effect on Schwann cell proliferation. Schwann cell activation-related markers including p-Erk1/2 and p75 were upregulated after LESW treatment. LESW-induced endogenous progenitor cell recruitment and Schwann cell activation coincides with angiogenesis, tissue, and nerve generation in a rat model of pelvic neurovascular injuries. Copyright © 2016 International Society for Sexual Medicine. Published by Elsevier Inc. All rights reserved.

A Proper Motions Study of the Globular Cluster NGC 3201

NASA Astrophysics Data System (ADS)

Sariya, Devesh P.; Jiang, Ing-Guey; Yadav, R. K. S.

2017-03-01

With a high value of heliocentric radial velocity, a retrograde orbit, and suspected to have an extragalactic origin, NGC 3201 is an interesting globular cluster for kinematical studies. Our purpose is to calculate the relative proper motions (PMs) and membership probability for the stars in the wide region of globular cluster NGC 3201. PM based membership probabilities are used to isolate the cluster sample from the field stars. The membership catalog will help address the question of chemical inhomogeneity in the cluster. Archive CCD data taken with a wide-field imager (WFI) mounted on the ESO 2.2 m telescope are reduced using the high-precision astrometric software developed by Anderson et al. for the WFI images. The epoch gap between the two observational runs is ˜14.3 years. To standardize the BVI photometry, Stetson’s secondary standard stars are used. The CCD data with an epoch gap of ˜14.3 years enables us to decontaminate the cluster stars from field stars efficiently. The median precision of PMs is better than ˜0.8 mas yr-1 for stars having V< 18 mag that increases up to ˜1.5 mas yr-1 for stars with 18< V< 20 mag. Kinematic membership probabilities are calculated using PMs for stars brighter than V˜ 20 mag. An electronic catalog of positions, relative PMs, BVI magnitudes, and membership probabilities in the ˜19.7 × 17 arcmin2 region of NGC 3201 is presented. We use our membership catalog to identify probable cluster members among the known variables and X-ray sources in the direction of NGC 3201. Based on observations with the MPG/ESO 2.2 m and ESO/VLT telescopes, located at La Silla and Paranal Observatory, Chile, under DDT programs 164.O-0561(F), 093.A-9028(A), and the archive material.

Analysis of high accuracy, quantitative proteomics data in the MaxQB database.

PubMed

Schaab, Christoph; Geiger, Tamar; Stoehr, Gabriele; Cox, Juergen; Mann, Matthias

2012-03-01

MS-based proteomics generates rapidly increasing amounts of precise and quantitative information. Analysis of individual proteomic experiments has made great strides, but the crucial ability to compare and store information across different proteome measurements still presents many challenges. For example, it has been difficult to avoid contamination of databases with low quality peptide identifications, to control for the inflation in false positive identifications when combining data sets, and to integrate quantitative data. Although, for example, the contamination with low quality identifications has been addressed by joint analysis of deposited raw data in some public repositories, we reasoned that there should be a role for a database specifically designed for high resolution and quantitative data. Here we describe a novel database termed MaxQB that stores and displays collections of large proteomics projects and allows joint analysis and comparison. We demonstrate the analysis tools of MaxQB using proteome data of 11 different human cell lines and 28 mouse tissues. The database-wide false discovery rate is controlled by adjusting the project specific cutoff scores for the combined data sets. The 11 cell line proteomes together identify proteins expressed from more than half of all human genes. For each protein of interest, expression levels estimated by label-free quantification can be visualized across the cell lines. Similarly, the expression rank order and estimated amount of each protein within each proteome are plotted. We used MaxQB to calculate the signal reproducibility of the detected peptides for the same proteins across different proteomes. Spearman rank correlation between peptide intensity and detection probability of identified proteins was greater than 0.8 for 64% of the proteome, whereas a minority of proteins have negative correlation. This information can be used to pinpoint false protein identifications, independently of peptide database scores. The information contained in MaxQB, including high resolution fragment spectra, is accessible to the community via a user-friendly web interface at http://www.biochem.mpg.de/maxqb.

Physical properties, star-spot activity, orbital obliquity and transmission spectrum of the Qatar-2 planetary system from multicolour photometry

NASA Astrophysics Data System (ADS)

Mancini, L.; Southworth, J.; Ciceri, S.; Tregloan-Reed, J.; Crossfield, I.; Nikolov, N.; Bruni, I.; Zambelli, R.; Henning, Th.

2014-09-01

We present 17 high-precision light curves of five transits of the planet Qatar-2 b, obtained from four defocused 2 m-class telescopes. Three of the transits were observed simultaneously in the Sloan g'r'i'z' passbands using the seven-beam Gamma Ray Burst Optical and Near-Infrared Detector imager on the MPG/ESO 2.2-m telescope. A fourth was observed simultaneously in Gunn grz using the Centro Astronómico Hispano Alemán 2.2-m telescope with Bonn University Simultaneous Camera, and in r using the Cassini 1.52-m telescope. Every light curve shows small anomalies due to the passage of the planetary shadow over a cool spot on the surface of the host star. We fit the light curves with the PRISM+GEMC model to obtain the photometric parameters of the system and the position, size and contrast of each spot. We use these photometric parameters and published spectroscopic measurements to obtain the physical properties of the system to high precision, finding a larger radius and lower density for both star and planet than previously thought. By tracking the change in position of one star-spot between two transit observations, we measure the orbital obliquity of Qatar-2 b to be λ = 4.3° ± 4.5°, strongly indicating an alignment of the stellar spin with the orbit of the planet. We calculate the rotation period and velocity of the cool host star to be 11.5 ± 0.2 d and 3.28 ± 0.04 km s-1 at a colatitude of 74°. We assemble the planet's transmission spectrum over the 386-976 nm wavelength range and search for variations of the measured radius of Qatar-2 b as a function of wavelength. Our analysis highlights a possible H2/He Rayleigh scattering in the blue.

Organic Species in Infrared Dark Clouds

NASA Astrophysics Data System (ADS)

Vasyunina, T.; Vasyunin, A. I.; Herbst, Eric; Linz, Hendrik; Voronkov, Maxim; Britton, Tui; Zinchenko, Igor; Schuller, Frederic

2014-01-01

It is currently assumed that infrared dark clouds (IRDCs) represent the earliest evolutionary stages of high-mass stars (>8 M ⊙). Submillimeter and millimeter-wave studies performed over the past 15 yr show that IRDCs possess a broad variety of properties, and hence a wide range of problems and questions that can be tackled. In this paper, we report an investigation of the molecular composition and chemical processes in two groups of IRDCs. Using the Mopra, APEX, and IRAM radio telescopes over the last four years, we have collected molecular line data for CO, H2CO, HNCO, CH3CCH, CH3OH, CH3CHO, CH3OCHO, and CH3OCH3. For all of these species we estimated molecular abundances. We then undertook chemical modeling studies, concentrating on the source IRDC028.34+0.06, and compared observed and modeled abundances. This comparison showed that to reproduce observed abundances of complex organic molecules, a zero-dimensional gas-grain model with constant physical conditions is not sufficient. We achieved greater success with the use of a warm-up model, in which warm-up from 10 K to 30 K occurs following a cold phase. Based on observations carried out with the IRAM 30 m Telescope. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain). This publication is based on data acquired with the Atacama Pathfinder Experiment (APEX). APEX is a collaboration between the Max-Planck-Institut für Radioastronomie, the European Southern Observatory, and the Onsala Space Observatory. The 22 m Mopra antenna is part of the Australia Telescope, which is funded by the Commonwealth of Australia for operations as a National Facility managed by CSIRO. The University of New South Wales Digital Filter Bank used for the observations with the Mopra Telescope was provided with support from the Australian Research Council.

Chemical segregation in the young protostars Barnard 1b-N and S. Evidence of pseudo-disk rotation in Barnard 1b-S

NASA Astrophysics Data System (ADS)

Fuente, A.; Gerin, M.; Pety, J.; Commerçon, B.; Agúndez, M.; Cernicharo, J.; Marcelino, N.; Roueff, E.; Lis, D. C.; Wootten, H. A.

2017-10-01

The extremely young Class 0 object B1b-S and the first hydrostatic core (FSHC) candidate, B1b-N, provide a unique opportunity to study the chemical changes produced in the elusive transition from the prestellar core to the protostellar phase. We present 40″ × 70″ images of Barnard 1b in the 13CO 1 → 0, C18O 1 → 0, NH2D 11,1a→ 10,1s, and SO 32→ 21 lines obtained with the NOEMA interferometer. The observed chemical segregation allows us to unveil the physical structure of this young protostellar system down to scales of 500 au. The two protostellar objects are embedded in an elongated condensation, with a velocity gradient of 0.2-0.4 m s-1 au-1 in the east-west direction, reminiscent of an axial collapse. The NH2D data reveal cold and dense pseudo-disks (R 500 - 1000 au) around each protostar. Moreover, we observe evidence of pseudo-disk rotation around B1b-S. We do not see any signature of the bipolar outflows associated with B1b-N and B1b-S, which were previously detected in H2CO and CH3OH, in any of the imaged species. The non-detection of SO constrains the SO/CH3OH abundance ratio in the high-velocity gas. Based on observations carried out with the IRAM Northern Extended Millimeter Array (NOEMA). IRAM is supported by INSU/ CNRS (France), MPG (Germany), and IGN (Spain).The reduced datacube is only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/606/L3

Schema-based learning of adaptable and flexible prey-catching in anurans I. The basic architecture.

PubMed

Corbacho, Fernando; Nishikawa, Kiisa C; Weerasuriya, Ananda; Liaw, Jim-Shih; Arbib, Michael A

2005-12-01

A motor action often involves the coordination of several motor synergies and requires flexible adjustment of the ongoing execution based on feedback signals. To elucidate the neural mechanisms underlying the construction and selection of motor synergies, we study prey-capture in anurans. Experimental data demonstrate the intricate interaction between different motor synergies, including the interplay of their afferent feedback signals (Weerasuriya 1991; Anderson and Nishikawa 1996). Such data provide insights for the general issues concerning two-way information flow between sensory centers, motor circuits and periphery in motor coordination. We show how different afferent feedback signals about the status of the different components of the motor apparatus play a critical role in motor control as well as in learning. This paper, along with its companion paper, extend the model by Liaw et al. (1994) by integrating a number of different motor pattern generators, different types of afferent feedback, as well as the corresponding control structure within an adaptive framework we call Schema-Based Learning. We develop a model of the different MPGs involved in prey-catching as a vehicle to investigate the following questions: What are the characteristic features of the activity of a single muscle? How can these features be controlled by the premotor circuit? What are the strategies employed to generate and synchronize motor synergies? What is the role of afferent feedback in shaping the activity of a MPG? How can several MPGs share the same underlying circuitry and yet give rise to different motor patterns under different input conditions? In the companion paper we also extend the model by incorporating learning components that give rise to more flexible, adaptable and robust behaviors. To show these aspects we incorporate studies on experiments on lesions and the learning processes that allow the animal to recover its proper functioning.

Detection of new eruptions in the Magellanic Clouds luminous blue variables R 40 and R 110

NASA Astrophysics Data System (ADS)

Campagnolo, J. C. N.; Borges Fernandes, M.; Drake, N. A.; Kraus, M.; Guerrero, C. A.; Pereira, C. B.

2018-05-01

We performed a spectroscopic and photometric analysis to study new eruptions in two luminous blue variables (LBVs) in the Magellanic Clouds. We detected a strong new eruption in the LBV R40 that reached V 9.2 in 2016, which is around 1.3 mag brighter than the minimum registered in 1985. During this new eruption, the star changed from an A-type to a late F-type spectrum. Based on photometric and spectroscopic empirical calibrations and synthetic spectral modeling, we determine that R 40 reached Teff = 5800-6300 K during this new eruption. This object is thereby probably one of the coolest identified LBVs. We could also identify an enrichment of nitrogen and r- and s-process elements. We detected a weak eruption in the LBV R 110 with a maximum of V 9.9 mag in 2011, that is, around 1.0 mag brighter than in the quiescent phase. On the other hand, this new eruption is about 0.2 mag fainter than the first eruption detected in 1990, but the temperature did not decrease below 8500 K. Spitzer spectra show indications of cool dust in the circumstellar environment of both stars, but no hot or warm dust was present, except by the probable presence of PAHs in R 110. We also discuss a possible post-red supergiant nature for both stars. Based on observations with the 0.6 m telescope at Pico dos Dias Observatory (Brazil) and MPG/ESO 2.2-m telescope at the European Southern Observatory (La Silla, Chile) under the Prog. IDs: 094.A-9029(D), 096.A-9039(A), and 098.A-9039(C), and under the agreements ESO-Observatório Nacional/MCTIC and MPI-Observatório Nacional/MCTIC, Prog. IDs.: 076.D-0609(A) and 096.A-9030(A).

Seeds of Life in Space (SOLIS). III. Zooming Into the Methanol Peak of the Prestellar Core L1544

NASA Astrophysics Data System (ADS)

Punanova, Anna; Caselli, Paola; Feng, Siyi; Chacón-Tanarro, Ana; Ceccarelli, Cecilia; Neri, Roberto; Fontani, Francesco; Jiménez-Serra, Izaskun; Vastel, Charlotte; Bizzocchi, Luca; Pon, Andy; Vasyunin, Anton I.; Spezzano, Silvia; Hily-Blant, Pierre; Testi, Leonardo; Viti, Serena; Yamamoto, Satoshi; Alves, Felipe; Bachiller, Rafael; Balucani, Nadia; Bianchi, Eleonora; Bottinelli, Sandrine; Caux, Emmanuel; Choudhury, Rumpa; Codella, Claudio; Dulieu, François; Favre, Cécile; Holdship, Jonathan; Jaber Al-Edhari, Ali; Kahane, Claudine; Laas, Jake; LeFloch, Bertrand; López-Sepulcre, Ana; Ospina-Zamudio, Juan; Oya, Yoko; Pineda, Jaime E.; Podio, Linda; Quenard, Davide; Rimola, Albert; Sakai, Nami; Sims, Ian R.; Taquet, Vianney; Theulé, Patrice; Ugliengo, Piero

2018-03-01

Toward the prestellar core L1544, the methanol (CH3OH) emission forms an asymmetric ring around the core center, where CH3OH is mostly in solid form, with a clear peak at 4000 au to the northeast of the dust continuum peak. As part of the NOEMA Large Project SOLIS (Seeds of Life in Space), the CH3OH peak has been spatially resolved to study its kinematics and physical structure and to investigate the cause behind the local enhancement. We find that methanol emission is distributed in a ridge parallel to the main axis of the dense core. The centroid velocity increases by about 0.2 km s‑1 and the velocity dispersion increases from subsonic to transonic toward the central zone of the core, where the velocity field also shows complex structure. This could be an indication of gentle accretion of material onto the core or the interaction of two filaments, producing a slow shock. We measure the rotational temperature and show that methanol is in local thermodynamic equilibrium (LTE) only close to the dust peak, where it is significantly depleted. The CH3OH column density, N tot(CH3OH), profile has been derived with non-LTE radiative transfer modeling and compared with chemical models of a static core. The measured N tot(CH3OH) profile is consistent with model predictions, but the total column densities are one order of magnitude lower than those predicted by models, suggesting that the efficiency of reactive desorption or atomic hydrogen tunneling adopted in the model may be overestimated; or that an evolutionary model is needed to better reproduce methanol abundance. This work is based on observations carried out under project number L15AA with the IRAM NOEMA Interferometer and on observations carried out with the IRAM 30 m telescope. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain).

A new electrochemical substrate for rapid and sensitive in vivo monitoring of β-galactosidase gene expressions.

PubMed

Manibalan, Kesavan; Mani, Veerappan; Huang, Chih-Hung; Huang, Sheng-Tung; Chang, Pu-Chieh

2015-09-07

A 4-Methoxyphenyl-β-galactopyranoside (4-MPGal) substrate incorporating 4-methoxy phenol (4-MP) as an electrochemical reporter is described for the monitoring of β-Galactosidase (β-Gal) gene expressions. β-Gal derived from Escherichia coli (E. coli) and Aspergillus oryzae (A. oryzae) were investigated, while a graphene oxide film modified electrode was employed as the transducer. The electrochemical signal of 4-MPG within 4-MPGal was masked by protecting their hydroxyl group with galactose. The externally added β-Gal triggered the deprotection through specific enzymatic hydrolysis with concomitant release of 4-MP. The apparent Km and Vmax values of 4-MPGal are determined to be 0.21 mM and 0.51 μM min(-1) mg of β-Gal(-1) (E. coli), which is consistent with the previous reports. To detect β-Gal derived from E. coli, cyclic voltammetry (CV) provides linear ranges of 12-1200 ng mL(-1) and 1.2-12 μg mL(-1) with a limit of detection (LOD) of 5 ng mL(-1), while differential pulse voltammetry (DPV) shows a linear range of 1.2-120 ng mL(-1) and LOD of 1 ng mL(-1). To detect β-Gal derived from A. oryzae, CV provides linear ranges of 0.1-100 ng mL(-1) and 0.1-1 μg mL(-1) with a LOD of 0.06 ng mL(-1), while DPV shows a linear range of 10 pg mL(-1)-10 ng mL(-1) with a LOD of 8 pg mL(-1). Moreover, we set up a platform for the real-time in vivo monitoring of β-Gal gene expressions in E. coli cultivated through microbiological culture. The developed sensing platform using 4-MPGal as a substrate is simple, rapid, sensitive, specific and advantageous over its laborious optical analogues.

HATS-1b: The First Transiting Planet Discovered by the HATSouth Survey

NASA Astrophysics Data System (ADS)

Penev, K.; Bakos, G. Á.; Bayliss, D.; Jordán, A.; Mohler, M.; Zhou, G.; Suc, V.; Rabus, M.; Hartman, J. D.; Mancini, L.; Béky, B.; Csubry, Z.; Buchhave, L.; Henning, T.; Nikolov, N.; Csák, B.; Brahm, R.; Espinoza, N.; Conroy, P.; Noyes, R. W.; Sasselov, D. D.; Schmidt, B.; Wright, D. J.; Tinney, C. G.; Addison, B. C.; Lázár, J.; Papp, I.; Sári, P.

2013-01-01

We report the discovery of HATS-1b, a transiting extrasolar planet orbiting the moderately bright V = 12.05 G dwarf star GSC 6652-00186, and the first planet discovered by HATSouth, a global network of autonomous wide-field telescopes. HATS-1b has a period of P ≈ 3.4465 days, mass of Mp ≈ 1.86 M J, and radius of Rp ≈ 1.30 R J. The host star has a mass of 0.99 M ⊙ and radius of 1.04 R ⊙. The discovery light curve of HATS-1b has near-continuous coverage over several multi-day timespans, demonstrating the power of using a global network of telescopes to discover transiting planets. The HATSouth network is operated by a collaboration consisting of Princeton University (PU), the Max Planck Institute für Astronomie (MPIA), and the Australian National University (ANU). The station at Las Campanas Observatory (LCO) of the Carnegie Institute, is operated by PU in conjunction with collaborators at the Pontificia Universidad Católica de Chile (PUC), the station at the High Energy Spectroscopic Survey (HESS) site is operated in conjunction with MPIA, and the station at Siding Spring Observatory (SSO) is operated jointly with ANU. Based in part on observations made with the Nordic Optical Telescope, operated on the island of La Palma in the Spanish Observatorio del Roque de los Muchachos of the Instituto de Astrofisica de Canarias. Based on observations made with the MPG/ESO 2.2 m Telescope at the ESO Observatory in La Silla. FEROS ID programmes: P087.A-9014(A), P088.A-9008(A), P089.A-9008(A), P087.C-0508(A). GROND ID programme: 089.A-9006(A). This paper uses observations obtained with facilities of the Las Cumbres Observatory Global Telescope.

Reflected Glory

NASA Astrophysics Data System (ADS)

2011-02-01

The nebula Messier 78 takes centre stage in this image taken with the Wide Field Imager on the MPG/ESO 2.2-metre telescope at the La Silla Observatory in Chile, while the stars powering the bright display take a backseat. The brilliant starlight ricochets off dust particles in the nebula, illuminating it with scattered blue light. Igor Chekalin was the overall winner of ESO's Hidden Treasures 2010 astrophotography competition with his image of this stunning object. Messier 78 is a fine example of a reflection nebula. The ultraviolet radiation from the stars that illuminate it is not intense enough to ionise the gas to make it glow - its dust particles simply reflect the starlight that falls on them. Despite this, Messier 78 can easily be observed with a small telescope, being one of the brightest reflection nebulae in the sky. It lies about 1350 light-years away in the constellation of Orion (The Hunter) and can be found northeast of the easternmost star of Orion's belt. This new image of Messier 78 from the MPG/ESO 2.2-metre telescope at the La Silla Observatory is based on data selected by Igor Chekalin in his winning entry to the Hidden Treasures competition [1]. The pale blue tint seen in the nebula in this picture is an accurate representation of its dominant colour. Blue hues are commonly seen in reflection nebulae because of the way the starlight is scattered by the tiny dust particles that they contain: the shorter wavelength of blue light is scattered more efficiently than the longer wavelength red light. This image contains many other striking features apart from the glowing nebula. A thick band of obscuring dust stretches across the image from the upper left to the lower right, blocking the light from background stars. In the bottom right corner, many curious pink structures are also visible, which are created by jets of material being ejected from stars that have recently formed and are still buried deep in dust clouds. Two bright stars, HD 38563A and HD 38563B, are the main powerhouses behind Messier 78. However, the nebula is home to many more stars, including a collection of about 45 low mass, young stars (less than 10 million years old) in which the cores are still too cool for hydrogen fusion to start, known as T Tauri stars. Studying T Tauri stars is important for understanding the early stages of star formation and how planetary systems are created. Remarkably, this complex of nebulae has also changed significantly in the last ten years. In February 2004 the experienced amateur observer Jay McNeil took an image of this region with a 75 mm telescope and was surprised to see a bright nebula - the prominent fan shaped feature near the bottom of this picture - where nothing was seen on most earlier images. This object is now known as McNeil's Nebula and it appears to be a highly variable reflection nebula around a young star. This colour picture was created from many monochrome exposures taken through blue, yellow/green and red filters, supplemented by exposures through an H-alpha filter that shows light from glowing hydrogen gas. The total exposure times were 9, 9, 17.5 and 15.5 minutes per filter, respectively. Notes [1] Igor Chekalin from Russia uncovered the raw data for this image of Messier 78 in ESO's archives in the competition Hidden Treasures (eso1102). He processed the raw data with great skill, claiming first prize in the contest for his final image (Flickr link). ESO's team of in-house image processing experts then independently processed the raw data at full resolution to produce the image shown here. More information ESO, the European Southern Observatory, is the foremost intergovernmental astronomy organisation in Europe and the world's most productive astronomical observatory. It is supported by 15 countries: Austria, Belgium, Brazil, the Czech Republic, Denmark, France, Finland, Germany, Italy, the Netherlands, Portugal, Spain, Sweden, Switzerland and the United Kingdom. ESO carries out an ambitious programme focused on the design, construction and operation of powerful ground-based observing facilities enabling astronomers to make important scientific discoveries. ESO also plays a leading role in promoting and organising cooperation in astronomical research. ESO operates three unique world-class observing sites in Chile: La Silla, Paranal and Chajnantor. At Paranal, ESO operates the Very Large Telescope, the world's most advanced visible-light astronomical observatory and VISTA, the world's largest survey telescope. ESO is the European partner of a revolutionary astronomical telescope ALMA, the largest astronomical project in existence. ESO is currently planning a 42-metre European Extremely Large optical/near-infrared Telescope, the E-ELT, which will become "the world's biggest eye on the sky".

Clues to NaCN formation

NASA Astrophysics Data System (ADS)

Quintana-Lacaci, G.; Cernicharo, J.; Velilla Prieto, L.; Agúndez, M.; Castro-Carrizo, A.; Fonfría, J. P.; Massalkhi, S.; Pardo, J. R.

2017-11-01

Context. ALMA is providing us essential information on where certain molecules form. Observing where these molecules emission arises from, the physical conditions of the gas, and how this relates with the presence of other species allows us to understand the formation of many species, and to significantly improve our knowledge of the chemistry that occurs in the space. Aims: We studied the molecular distribution of NaCN around IRC +10216, a molecule detected previously, but whose origin is not clear. High angular resolution maps allow us to model the abundance distribution of this molecule and check suggested formation paths. Methods: We modeled the emission of NaCN assuming local thermal equilibrium (LTE) conditions. These profiles were fitted to azimuthal averaged intensity profiles to obtain an abundance distribution of NaCN. Results: We found that the presence of NaCN seems compatible with the presence of CN, probably as a result of the photodissociation of HCN, in the inner layers of the ejecta of IRC +10216. However, similar as for CH3CN, current photochemical models fail to reproduce this CN reservoir. We also found that the abundance peak of NaCN appears at a radius of 3 × 1015 cm, approximately where the abundance of NaCl, suggested to be the parent species, starts to decay. However, the abundance ratio shows that the NaCl abundance is lower than that obtained for NaCN. We expect that the LTE assumption might result in NaCN abundances higher than the real ones. Updated photochemical models, collisional rates, and reaction rates are essential to determine the possible paths of the NaCN formation. Based on observations carried out with ALMA and the IRAM 30 m Telescope. ALMA is a partnership of ESO (representing its member states), NSF (USA) and NINS (Japan), together with NRC (Canada) and NSC and ASIAA (Taiwan), in cooperation with the Republic of Chile. The Joint ALMA Observatory is operated by ESO, AUI/NRAO and NAOJ. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain). This paper makes use of the following ALMA data: ADS/JAO.ALMA#2013.1.00432.S & ADS/JAO.ALMA#2016.1.01217.S.

Nutritional requirements of sheep, goats and cattle in warm climates: a meta-analysis.

PubMed

Salah, N; Sauvant, D; Archimède, H

2014-09-01

The objective of the study was to update energy and protein requirements of growing sheep, goats and cattle in warm areas through a meta-analysis study of 590 publications. Requirements were expressed on metabolic live weight (MLW=LW0.75) and LW1 basis. The maintenance requirements for energy were 542.64 and 631.26 kJ ME/kg LW0.75 for small ruminants and cattle, respectively, and the difference was significant (P<0.01). The corresponding requirement for 1 g gain was 24.3 kJ ME without any significant effect of species. Relative to LW0.75, there was no difference among genotypes intra-species in terms of ME requirement for maintenance and gain. However, small ruminants of warm and tropical climate appeared to have higher ME requirements for maintenance relative to live weight (LW) compared with temperate climate ones and cattle. Maintenance requirements for protein were estimated via two approaches. For these two methods, the data in which retained nitrogen (RN) was used cover the same range of variability of observations. The regression of digestible CP intake (DCPI, g/kg LW0.75) against RN (g/kg LW0.75) indicated that DCP requirements are significantly higher in sheep (3.36 g/kg LW0.75) than in goats (2.38 g/kg LW0.75), with cattle intermediate (2.81 g/kg LW0.75), without any significant difference in the quantity of DCPI/g retained CP (RCP) (40.43). Regressing metabolisable protein (MP) or minimal digestible protein in the intestine (PDImin) against RCP showed that there was no difference between species and genotypes, neither for the intercept (maintenance=3.51 g/kg LW0.75 for sheep and goat v. 4.35 for cattle) nor for the slope (growth=0.60 g MP/g RCP). The regression of DCP against ADG showed that DCP requirements did not differ among species or genotypes. These new feeding standards are derived from a wider range of nutritional conditions compared with existing feeding standards as they are based on a larger database. The standards seem to be more appropriate for ruminants in warm and tropical climates around the world.

South China Sea kinematics

NASA Astrophysics Data System (ADS)

Sibuet, J. C.; Gao, J.; Zhao, M.; Wu, J.; Ding, W.; Yeh, Y. C.; Lee, C. S.

2016-12-01

Magnetic modeling shows that the age of the youngest South China Sea (SCS) oceanic crust is controversial (e.g. 15.5 Ma (Briais et al., JGR 1993) and 20.5 Ma (Barckhausen et al., MPG 2014)). Recently, Sibuet et al. (Tectonophysics 2016) pointed out that post-spreading magmatic activity ( 8-13 Ma) largely masks the spreading fabric, in particular near the previously identified E-W portion of the extinct ridge axis of the East sub-basin. Their compilation of available swath bathymetric data shows that, if post-spreading volcanics hide the seafloor spreading magnetic fabric mostly along and near the extinct spreading axis, the whole SCS is globally characterized by rift directions following three directions: N055°in the youngest portion of the SCS, N065° and N085° in the oldest portions of the SCS, suggesting the extinct ridge axis is N055° trending instead of E-W. We present an updated version of the whole SCS structural sketch based on previously published swath bathymetric trends and new detailed magnetic lineations trends compiled from an extremely dense set of magnetic data. The new structural sketch shows: - The distribution of conjugate kinematic domains, - The early opening of the NW and East sub-basins, before a jump of the rift axis, - A second ridge jump in the East basin, - The different expressions of the post-spreading magmatism in the East and SW sub-basins. In the East sub-basin, crustal magmatic intrusions led to the formation of extrusive basalts associated with the presence of numerous volcanoes (Wang et al., Geological Journal 2016). In the SW sub-basin, crustal magmatic intrusions deformed and uplifted the already formed oceanic crust and oldest overlying sediments, resulting in the formation of a double post-spreading ridge belt previously identified as the shoulders of the extinct spreading rift axis. This preliminary work will be used to identify magnetic lineations not polluted by the post-spreading magmatism. The unfolded Manila trench and proto-SCS slabs from seismic tomography indicate that the Eurasian margin has been maximum 500 km east of the Manila trench since the proto-SCS era, and we incorporate these restored slabs to define a more complete SCS kinematic history.

Reconstruction of spectral solar irradiance since 1700 from simulated magnetograms

NASA Astrophysics Data System (ADS)

Dasi-Espuig, M.; Jiang, J.; Krivova, N. A.; Solanki, S. K.; Unruh, Y. C.; Yeo, K. L.

2016-05-01

Aims: We present a reconstruction of the spectral solar irradiance since 1700 using the SATIRE-T2 (Spectral And Total Irradiance REconstructions for the Telescope era version 2) model. This model uses as input magnetograms simulated with a surface flux transport model fed with semi-synthetic records of emerging sunspot groups. Methods: The record of sunspot group areas and positions from the Royal Greenwich Observatory (RGO) is only available since 1874. We used statistical relationships between the properties of sunspot group emergence, such as the latitude, area, and tilt angle, and the sunspot cycle strength and phase to produce semi-synthetic sunspot group records starting in the year 1700. The semi-synthetic records are fed into a surface flux transport model to obtain daily simulated magnetograms that map the distribution of the magnetic flux in active regions (sunspots and faculae) and their decay products on the solar surface. The magnetic flux emerging in ephemeral regions is accounted for separately based on the concept of extended cycles whose length and amplitude are linked to those of the sunspot cycles through the sunspot number. The magnetic flux in each surface component (sunspots, faculae and network, and ephemeral regions) was used to compute the spectral and total solar irradiance (TSI) between the years 1700 and 2009. This reconstruction is aimed at timescales of months or longer although the model returns daily values. Results: We found that SATIRE-T2, besides reproducing other relevant observations such as the total magnetic flux, reconstructs the TSI on timescales of months or longer in good agreement with the PMOD composite of observations, as well as with the reconstruction starting in 1878 based on the RGO-SOON data. The model predicts an increase in the TSI of 1.2+0.2-0.3 Wm-2 between 1700 and the present. The spectral irradiance reconstruction is in good agreement with the UARS/SUSIM measurements as well as the Lyman-α composite. The complete total and spectral (115 nm-160 μm) irradiance reconstructions since 1700 will be available from http://www2.mps.mpg.de/projects/sun-climate/data.html

Proper motions and membership probabilities of stars in the region of globular cluster NGC 6366

NASA Astrophysics Data System (ADS)

Sariya, Devesh P.; Yadav, R. K. S.

2015-12-01

Context. NGC 6366 is a metal-rich globular cluster that is relatively unstudied. It is a kinematically interesting cluster, reported as belonging to the slowly rotating halo system, which is unusual given its metallicity and spatial location in the Galaxy. Aims: The purpose of this research is to determine the relative proper motion and membership probability of the stars in the region of globular cluster NGC 6366. To target cluster members reliably during spectroscopic surveys without including field stars, a good proper motion and membership probability catalogue of NGC 6366 is needed. Methods: To derive relative proper motions, the archival data from the Wide Field Imager mounted on the ESO 2.2 m telescope have been reduced using a high precision astrometric software. The images used are in the B,V, and I photometric bands with an epoch gap of ~3.2 yr. The calibrated BVI magnitudes have been determined using recent data for secondary standard stars. Results: We determined relative proper motions and cluster membership probabilities for 2530 stars in the field of globular cluster NGC 6366. The median proper motion rms errors for stars brighter than V ~ 18 mag is ~2 mas yr-1, which gradually increases to ~5 mas yr-1 for stars having magnitudes V ~ 20 mag. Based on the membership catalogue, we checked the membership status of the X-ray sources and variable stars of NGC 6366 mentioned in the literature. We also provide the astronomical community with an electronic catalogue that includes B, V, and I magnitudes; relative proper motions; and membership probabilities of the stars in the region of NGC 6366. Based on observations with the MPG/ESO 2.2 m and ESO/VLT telescopes, located at La Silla and Paranal Observatory, Chile, under DDT programs 164.O-0561(F), 71.D-0220(A) and the archive material.Full Table 4 is only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/584/A59

HATS-17b: A Transiting Compact Warm Jupiter in a 16.3 Day Circular Orbit

NASA Astrophysics Data System (ADS)

Brahm, R.; Jordán, A.; Bakos, G. Á.; Penev, K.; Espinoza, N.; Rabus, M.; Hartman, J. D.; Bayliss, D.; Ciceri, S.; Zhou, G.; Mancini, L.; Tan, T. G.; de Val-Borro, M.; Bhatti, W.; Csubry, Z.; Bento, J.; Henning, T.; Schmidt, B.; Rojas, F.; Suc, V.; Lázár, J.; Papp, I.; Sári, P.

2016-04-01

We report the discovery of HATS-17b, the first transiting warm Jupiter of the HATSouth network. HATS-17b transits its bright (V = 12.4) G-type ({M}\\star = 1.131+/- 0.030 {M}⊙ , {R}\\star = {1.091}-0.046+0.070 {R}⊙ ) metal-rich ([Fe/H] = +0.3 dex) host star in a circular orbit with a period of P = 16.2546 days. HATS-17b has a very compact radius of 0.777+/- 0.056 {R}{{J}} given its Jupiter-like mass of 1.338+/- 0.065 {M}{{J}}. Up to 50% of the mass of HATS-17b may be composed of heavy elements in order to explain its high density with current models of planetary structure. HATS-17b is the longest period transiting planet discovered to date by a ground-based photometric survey, and is one of the brightest transiting warm Jupiter systems known. The brightness of HATS-17 will allow detailed follow-up observations to characterize the orbital geometry of the system and the atmosphere of the planet. The HATSouth network is operated by a collaboration consisting of Princeton University (PU), the Max Planck Institute für Astronomie (MPIA), the Australian National University (ANU), and the Pontificia Universidad Católica de Chile (PUC). The station at Las Campanas Observatory (LCO) of the Carnegie Institute is operated by PU in conjunction with PUC, the station at the High Energy Spectroscopic Survey (H.E.S.S.) site is operated in conjunction with MPIA, and the station at Siding Spring Observatory (SSO) is operated jointly with ANU. This paper includes data gathered with the MPG 2.2 m telescope at the ESO Observatory in La Silla and with the 3.9 m AAT in Siding Spring Observatory. This paper uses observations obtained with facilities of the Las Cumbres Observatory Global Telescope. Based on observations taken with the HARPS spectrograph (ESO 3.6 m telescope at La Silla) under programme 097.C-0571.

Physical conditions of the molecular gas in metal-poor galaxies

NASA Astrophysics Data System (ADS)

Hunt, L. K.; Weiß, A.; Henkel, C.; Combes, F.; García-Burillo, S.; Casasola, V.; Caselli, P.; Lundgren, A.; Maiolino, R.; Menten, K. M.; Testi, L.

2017-10-01

Studying the molecular component of the interstellar medium (ISM) in metal-poor galaxies has been challenging because of the faintness of carbon monoxide emission, the most common proxy of H2. Here we present new detections of molecular gas at low metallicities, and assess the physical conditions in the gas through various CO transitions for 8 galaxies. For one, NGC 1140 (Z/Z⊙ 0.3), two detections of 13CO isotopologues and atomic carbon, [Ci](1-0) and an upper limit for HCN(1-0) are also reported. After correcting to a common beam size, we compared 12CO(2-1)/12CO(1-0) (R21) and 12CO(3-2)/12CO(1-0) (R31) line ratios of our sample with galaxies from the literature and find that only NGC 1140 shows extreme values (R21 R31 2). Fitting physical models to the 12CO and 13CO emission in NGC 1140 suggests that the molecular gas is cool (kinetic temperature Tkin ≲ 20 K), dense (H2 volume density nH2 ≳ 106 cm-3), with moderate CO column density (NCO 1016 cm-2) and low filling factor. Surprisingly, the [12CO]/[13CO] abundance ratio in NGC 1140 is very low ( 8-20), lower even than the value of 24 found in the Galactic Center. The young age of the starburst in NGC 1140 precludes 13CO enrichment from evolved intermediate-mass stars; instead we attribute the low ratio to charge-exchange reactions and fractionation, because of the enhanced efficiency of these processes in cool gas at moderate column densities. Fitting physical models to 12CO and [Ci](1-0) emission in NGC 1140 gives an unusually low [12CO]/[12C] abundance ratio, suggesting that in this galaxy atomic carbon is at least 10 times more abundant than 12CO. Based on observations carried out with the IRAM 30 m and the Atacama Pathfinder Experiment (APEX). IRAM is supported by the INSU/CNRS (France), MPG (Germany), and IGN (Spain), and APEX is a collaboration between the Max-Planck-Institut fur Radioastronomie, the European Southern Observatory, and the Onsala Space Observatory.

HMMerThread: detecting remote, functional conserved domains in entire genomes by combining relaxed sequence-database searches with fold recognition.

PubMed

Bradshaw, Charles Richard; Surendranath, Vineeth; Henschel, Robert; Mueller, Matthias Stefan; Habermann, Bianca Hermine

2011-03-10

Conserved domains in proteins are one of the major sources of functional information for experimental design and genome-level annotation. Though search tools for conserved domain databases such as Hidden Markov Models (HMMs) are sensitive in detecting conserved domains in proteins when they share sufficient sequence similarity, they tend to miss more divergent family members, as they lack a reliable statistical framework for the detection of low sequence similarity. We have developed a greatly improved HMMerThread algorithm that can detect remotely conserved domains in highly divergent sequences. HMMerThread combines relaxed conserved domain searches with fold recognition to eliminate false positive, sequence-based identifications. With an accuracy of 90%, our software is able to automatically predict highly divergent members of conserved domain families with an associated 3-dimensional structure. We give additional confidence to our predictions by validation across species. We have run HMMerThread searches on eight proteomes including human and present a rich resource of remotely conserved domains, which adds significantly to the functional annotation of entire proteomes. We find ∼4500 cross-species validated, remotely conserved domain predictions in the human proteome alone. As an example, we find a DNA-binding domain in the C-terminal part of the A-kinase anchor protein 10 (AKAP10), a PKA adaptor that has been implicated in cardiac arrhythmias and premature cardiac death, which upon stress likely translocates from mitochondria to the nucleus/nucleolus. Based on our prediction, we propose that with this HLH-domain, AKAP10 is involved in the transcriptional control of stress response. Further remotely conserved domains we discuss are examples from areas such as sporulation, chromosome segregation and signalling during immune response. The HMMerThread algorithm is able to automatically detect the presence of remotely conserved domains in proteins based on weak sequence similarity. Our predictions open up new avenues for biological and medical studies. Genome-wide HMMerThread domains are available at http://vm1-hmmerthread.age.mpg.de.

PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments.

PubMed

Usadel, Björn; Nagel, Axel; Steinhauser, Dirk; Gibon, Yves; Bläsing, Oliver E; Redestig, Henning; Sreenivasulu, Nese; Krall, Leonard; Hannah, Matthew A; Poree, Fabien; Fernie, Alisdair R; Stitt, Mark

2006-12-18

Microarray technology has become a widely accepted and standardized tool in biology. The first microarray data analysis programs were developed to support pair-wise comparison. However, as microarray experiments have become more routine, large scale experiments have become more common, which investigate multiple time points or sets of mutants or transgenics. To extract biological information from such high-throughput expression data, it is necessary to develop efficient analytical platforms, which combine manually curated gene ontologies with efficient visualization and navigation tools. Currently, most tools focus on a few limited biological aspects, rather than offering a holistic, integrated analysis. Here we introduce PageMan, a multiplatform, user-friendly, and stand-alone software tool that annotates, investigates, and condenses high-throughput microarray data in the context of functional ontologies. It includes a GUI tool to transform different ontologies into a suitable format, enabling the user to compare and choose between different ontologies. It is equipped with several statistical modules for data analysis, including over-representation analysis and Wilcoxon statistical testing. Results are exported in a graphical format for direct use, or for further editing in graphics programs.PageMan provides a fast overview of single treatments, allows genome-level responses to be compared across several microarray experiments covering, for example, stress responses at multiple time points. This aids in searching for trait-specific changes in pathways using mutants or transgenics, analyzing development time-courses, and comparison between species. In a case study, we analyze the results of publicly available microarrays of multiple cold stress experiments using PageMan, and compare the results to a previously published meta-analysis.PageMan offers a complete user's guide, a web-based over-representation analysis as well as a tutorial, and is freely available at http://mapman.mpimp-golm.mpg.de/pageman/. PageMan allows multiple microarray experiments to be efficiently condensed into a single page graphical display. The flexible interface allows data to be quickly and easily visualized, facilitating comparisons within experiments and to published experiments, thus enabling researchers to gain a rapid overview of the biological responses in the experiments.

KnowLife: a versatile approach for constructing a large knowledge graph for biomedical sciences.

PubMed

Ernst, Patrick; Siu, Amy; Weikum, Gerhard

2015-05-14

Biomedical knowledge bases (KB's) have become important assets in life sciences. Prior work on KB construction has three major limitations. First, most biomedical KBs are manually built and curated, and cannot keep up with the rate at which new findings are published. Second, for automatic information extraction (IE), the text genre of choice has been scientific publications, neglecting sources like health portals and online communities. Third, most prior work on IE has focused on the molecular level or chemogenomics only, like protein-protein interactions or gene-drug relationships, or solely address highly specific topics such as drug effects. We address these three limitations by a versatile and scalable approach to automatic KB construction. Using a small number of seed facts for distant supervision of pattern-based extraction, we harvest a huge number of facts in an automated manner without requiring any explicit training. We extend previous techniques for pattern-based IE with confidence statistics, and we combine this recall-oriented stage with logical reasoning for consistency constraint checking to achieve high precision. To our knowledge, this is the first method that uses consistency checking for biomedical relations. Our approach can be easily extended to incorporate additional relations and constraints. We ran extensive experiments not only for scientific publications, but also for encyclopedic health portals and online communities, creating different KB's based on different configurations. We assess the size and quality of each KB, in terms of number of facts and precision. The best configured KB, KnowLife, contains more than 500,000 facts at a precision of 93% for 13 relations covering genes, organs, diseases, symptoms, treatments, as well as environmental and lifestyle risk factors. KnowLife is a large knowledge base for health and life sciences, automatically constructed from different Web sources. As a unique feature, KnowLife is harvested from different text genres such as scientific publications, health portals, and online communities. Thus, it has the potential to serve as one-stop portal for a wide range of relations and use cases. To showcase the breadth and usefulness, we make the KnowLife KB accessible through the health portal (http://knowlife.mpi-inf.mpg.de).

HATS-31b through HATS-35b: Five Transiting Hot Jupiters Discovered By the HATSouth Survey

NASA Astrophysics Data System (ADS)

de Val-Borro, M.; Bakos, G. Á.; Brahm, R.; Hartman, J. D.; Espinoza, N.; Penev, K.; Ciceri, S.; Jordán, A.; Bhatti, W.; Csubry, Z.; Bayliss, D.; Bento, J.; Zhou, G.; Rabus, M.; Mancini, L.; Henning, T.; Schmidt, B.; Tan, T. G.; Tinney, C. G.; Wright, D. J.; Kedziora-Chudczer, L.; Bailey, J.; Suc, V.; Durkan, S.; Lázár, J.; Papp, I.; Sári, P.

2016-12-01

We report the discovery of five new transiting hot-Jupiter planets discovered by the HATSouth survey, HATS-31b through HATS-35b. These planets orbit moderately bright stars with V magnitudes within the range of 11.9-14.4 mag while the planets span a range of masses of 0.88-1.22 {M}{{J}} and have somewhat inflated radii between 1.23 and 1.64 {R}{{J}}. These planets can be classified as typical hot Jupiters, with HATS-31b and HATS-35b being moderately inflated gas giant planets with radii of 1.64+/- 0.22 {R}{{J}} and {1.464}-0.044+0.069 {R}{{J}}, respectively, that can be used to constrain inflation mechanisms. All five systems present a higher Bayesian evidence for a fixed-circular-orbit model than for an eccentric orbit. The orbital periods range from 1.8209993+/- 0.0000016 day for HATS-35b) to 3.377960+/- 0.000012 day for HATS-31b. Additionally, HATS-35b orbits a relatively young F star with an age of 2.13+/- 0.51 Gyr. We discuss the analysis to derive the properties of these systems and compare them in the context of the sample of well-characterized transiting hot Jupiters known to date. The HATSouth network is operated by a collaboration consisting of Princeton University (PU), the Max Planck Institute für Astronomie (MPIA), the Australian National University (ANU), and the Pontificia Universidad Católica de Chile (PUC). The station at Las Campanas Observatory (LCO) of the Carnegie Institute is operated by PU in conjunction with PUC, the station at the High Energy Spectroscopic Survey (H.E.S.S.) site is operated in conjunction with MPIA, and the station at Siding Spring Observatory (SSO) is operated jointly with ANU. Based in part on data collected at the Subaru Telescope, which is operated by the National Astronomical Observatory of Japan. Based in part on observations made with the MPG 2.2 m and Euler1.2 m Telescopes at the ESO Observatory in La Silla. This paper uses observations obtained with facilities of the Las Cumbres Observatory Global Telescope.

PHIBSS: Unified Scaling Relations of Gas Depletion Time and Molecular Gas Fractions

NASA Astrophysics Data System (ADS)

Tacconi, L. J.; Genzel, R.; Saintonge, A.; Combes, F.; García-Burillo, S.; Neri, R.; Bolatto, A.; Contini, T.; Förster Schreiber, N. M.; Lilly, S.; Lutz, D.; Wuyts, S.; Accurso, G.; Boissier, J.; Boone, F.; Bouché, N.; Bournaud, F.; Burkert, A.; Carollo, M.; Cooper, M.; Cox, P.; Feruglio, C.; Freundlich, J.; Herrera-Camus, R.; Juneau, S.; Lippa, M.; Naab, T.; Renzini, A.; Salome, P.; Sternberg, A.; Tadaki, K.; Übler, H.; Walter, F.; Weiner, B.; Weiss, A.

2018-02-01

This paper provides an update of our previous scaling relations between galaxy-integrated molecular gas masses, stellar masses, and star formation rates (SFRs), in the framework of the star formation main sequence (MS), with the main goal of testing for possible systematic effects. For this purpose our new study combines three independent methods of determining molecular gas masses from CO line fluxes, far-infrared dust spectral energy distributions, and ∼1 mm dust photometry, in a large sample of 1444 star-forming galaxies between z = 0 and 4. The sample covers the stellar mass range log(M */M ⊙) = 9.0–11.8, and SFRs relative to that on the MS, δMS = SFR/SFR(MS), from 10‑1.3 to 102.2. Our most important finding is that all data sets, despite the different techniques and analysis methods used, follow the same scaling trends, once method-to-method zero-point offsets are minimized and uncertainties are properly taken into account. The molecular gas depletion time t depl, defined as the ratio of molecular gas mass to SFR, scales as (1 + z)‑0.6 × (δMS)‑0.44 and is only weakly dependent on stellar mass. The ratio of molecular to stellar mass μ gas depends on (1+z{)}2.5× {(δ {MS})}0.52× {({M}* )}-0.36, which tracks the evolution of the specific SFR. The redshift dependence of μ gas requires a curvature term, as may the mass dependences of t depl and μ gas. We find no or only weak correlations of t depl and μ gas with optical size R or surface density once one removes the above scalings, but we caution that optical sizes may not be appropriate for the high gas and dust columns at high z. Based on observations of an IRAM Legacy Program carried out with the NOEMA, operated by the Institute for Radio Astronomy in the Millimetre Range (IRAM), which is funded by a partnership of INSU/CNRS (France), MPG (Germany), and IGN (Spain).

BDNF-hypersecreting human umbilical cord blood mesenchymal stem cells promote erectile function in a rat model of cavernous nerve electrocautery injury.

PubMed

Song, Lujie; Zhu, Jianqiang; Zhang, Xiong; Cui, Zhiqiang; Fu, Qiang; Huang, Jianwen; Lu, Hongkai

2016-01-01

Erectile dysfunction (ED) continues to be a significant problem for men following radical prostatectomy. We hypothesize that intracavernous injection of BDNF-hypersecreting human umbilical cord blood mesenchymal stem cells (hUCB-MSCs) can ameliorate ED in a rat model of cavernous nerve electrocautery injury (CNEI). Forty-two male Sprague-Dawley rats were randomly divided into four groups: sham + PBS (n = 6), CNEI + PBS (n = 12), CNEI + hUCB-MSCs (n = 12) and CNEI + BDNF-hUCB-MSCs (n = 12). At day 28 post-surgery, erectile function was examined and specimens were harvested for histology. Immunofluorescence staining, Masson's trichrome staining and transmission electron microscopy were performed to determine the structural changes in corpus cavernosum. Cells that are injected into penis were labeled by BrdU and tracked by immunofluorescence staining. Three days post-surgery, the concentration of BDNF protein in penile tissues was measured by Western blotting. Rats intracavernosally injected with BDNF-hUCB-MSCs showed the most significant improvement in the ratio of maximal ICP to MAP (ICP/MAP). Histological examinations showed moderate recovery of nNOS-positive nerve fibers, ratio of smooth muscle to collagen and smooth muscle content in the CNEI + hUCB-MSCs group and remarkable recovery in the CNEI + BDNF-hUCB-MSCs group compared to the CNEI + PBS group. By TEM examination, atrophy of myelinated and non-myelinated nerve fibers was noted in CNEI + PBS group and significant recovery was observed in two treated groups. There were more BrdU-positive cells in the BDNF-hUCB-MSCs group than in the hUCB-MSCs group both in the penis and in the MPG. Three days post-surgery, the concentration of BDNF protein in penile tissues in BDNF-hUCB-MSCs group was much higher than in other groups. Intracavernous injection of BDNF-hypersecreting hUCB-MSCs can enhance the recovery of erectile function, promote the CNs regeneration and inhibit corpus cavernosum fibrosis after CNEI in a rat model.

Consecutive assessment of FA and ADC values of normal lumbar nerve roots from the junction of the dura mater.

PubMed

Miyagi, Ryo; Sakai, Toshinori; Yamabe, Eiko; Yoshioka, Hiroshi

2015-06-27

Diffusion weighted imaging (DWI) and diffusion tensor imaging (DTI) are widely used in the evaluation of the central nervous system and recently have been reported as a potential tool for diagnosis of the peripheral nerve or the lumbar nerve entrapment. The purpose of this study was to evaluate consecutive changes in apparent diffusion coefficient (ADC) and fractional anisotropy (FA) values of normal lumbar nerve roots from the junction of the dura mater. The lumbar spinal nerves were examined in 6 male healthy volunteers (mean age, 35 years) with no experiences of sciatica, with a 3.0-T MR unit using a five-element phased-array surface coil. DTI was performed with the following imaging parameters: 11084.6/73.7 ms for TR/TE; b-value, 800 s/mm2; MPG, 33 directions; slice thickness, 1.5 mm; and total scan time, 7 min 35 s. ADC and FA values at all consecutive points along the L4, L5 and S1 nerves were quantified on every 1.5 mm slice from the junction of the dura mater using short fiber tracking. ADC values of all L4, 5, and S1 nerve roots decreased linearly up to 15 mm from the dura junction and was constant distally afterward. ADC values in the proximal portion demonstrated S1 > L5 > L4 (p < 0.05). On the other hand, FA values increased linearly up to 15 mm from the dura junction, and was constant distally afterward. FA values in the proximal portion showed L4 > L5 > S1 (p < 0.05). Our study demonstrated that ADC and FA values of each L4, 5, and S1 at the proximal portion from the junction of the dura matter changed linearly. It would be useful to know the normal profile of DTI values by location of each nerve root so that we can detect subtle abnormalities in each nerve root.

CH3OCH3 in Orion-KL: a striking similarity with HCOOCH3

NASA Astrophysics Data System (ADS)

Brouillet, N.; Despois, D.; Baudry, A.; Peng, T.-C.; Favre, C.; Wootten, A.; Remijan, A. J.; Wilson, T. L.; Combes, F.; Wlodarczak, G.

2013-02-01

Context. Orion-KL is a remarkable, nearby star-forming region where a recent explosive event has generated shocks that could have released complex molecules from the grain mantles. Aims: A comparison of the distribution of the different complex molecules will help in understanding their formation and constraining the chemical models. Methods: We used several data sets from the Plateau de Bure Interferometer to map the dimethyl ether emission with different arcsec spatial resolutions and different energy levels (from Eup = 18 to 330 K) to compare with our previous methyl formate maps. Results: Our data show remarkable similarity between the dimethyl ether (CH3OCH3) and the methyl formate (HCOOCH3) distributions even on a small scale (1.8″ × 0.8″ or ~500 AU). This long suspected similarity, seen from both observational and theoretical arguments, is demonstrated with unprecedented confidence, with a correlation coefficient of maps ~0.8. Conclusions: A common precursor is the simplest explanation of our correlation. Comparisons with previous laboratory work and chemical models suggest the major role of grain surface chemistry and a recent release, probably with little processing, of mantle molecules by shocks. In this case the CH3O radical produced from methanol ice would be the common precursor (whereas ethanol, C2H5OH, is produced from the radical CH2OH). The alternative gas phase scheme, where protonated methanol CH3OH+2 is the common precursor to produce methyl formate and dimethyl ether through reactions with HCOOH and CH3OH, is also compatible with our data. Our observations cannot yet definitely allow a choice between the different chemical processes, but the tight correlation between the distributions of HCOOCH3 and CH3OCH3 strongly contrasts with the different behavior we observe for the distributions of ethanol and formic acid. This provides a very significant constraint on models. Based on observations carried out with the IRAM Plateau de Bure Interferometer. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain).

Phibss: Molecular Gas, Extinction, Star Formation, and Kinematics in the z = 1.5 Star-forming Galaxy EGS13011166

NASA Astrophysics Data System (ADS)

Genzel, R.; Tacconi, L. J.; Kurk, J.; Wuyts, S.; Combes, F.; Freundlich, J.; Bolatto, A.; Cooper, M. C.; Neri, R.; Nordon, R.; Bournaud, F.; Burkert, A.; Comerford, J.; Cox, P.; Davis, M.; Förster Schreiber, N. M.; García-Burillo, S.; Gracia-Carpio, J.; Lutz, D.; Naab, T.; Newman, S.; Saintonge, A.; Shapiro Griffin, K.; Shapley, A.; Sternberg, A.; Weiner, B.

2013-08-01

We report matched resolution imaging spectroscopy of the CO 3-2 line (with the IRAM Plateau de Bure millimeter interferometer) and of the Hα line (with LUCI at the Large Binocular Telescope) in the massive z = 1.53 main-sequence galaxy EGS 13011166, as part of the "Plateau de Bure high-z, blue-sequence survey" (PHIBSS: Tacconi et al.). We combine these data with Hubble Space Telescope V-I-J-H-band maps to derive spatially resolved distributions of stellar surface density, star formation rate, molecular gas surface density, optical extinction, and gas kinematics. The spatial distribution and kinematics of the ionized and molecular gas are remarkably similar and are well modeled by a turbulent, globally Toomre unstable, rotating disk. The stellar surface density distribution is smoother than the clumpy rest-frame UV/optical light distribution and peaks in an obscured, star-forming massive bulge near the dynamical center. The molecular gas surface density and the effective optical screen extinction track each other and are well modeled by a "mixed" extinction model. The inferred slope of the spatially resolved molecular gas to star formation rate relation, N = dlogΣstar form/dlogΣmol gas, depends strongly on the adopted extinction model, and can vary from 0.8 to 1.7. For the preferred mixed dust-gas model, we find N = 1.14 ± 0.1. Based on observations with the Plateau de Bure millimetre interferometer, operated by the Institute for Radio Astronomy in the Millimetre Range (IRAM), which is funded by a partnership of INSU/CNRS (France), MPG (Germany), and IGN (Spain). Based also on data acquired with the Large Binocular Telescope (LBT). The LBT is an international collaboration among institutions in Germany, Italy, and the United States. LBT Corporation partners are LBT Beteiligungsgesellschaft, Germany, representing the Max-Planck Society, the Astrophysical Institute Potsdam, and Heidelberg University; Istituto Nazionale di Astrofisica, Italy; The University of Arizona on behalf of the Arizona University system; The Ohio State University, and The Research Corporation, on behalf of the University of Notre Dame, University of Minnesota, and University of Virginia.

Spatially resolved images of reactive ions in the Orion Bar

NASA Astrophysics Data System (ADS)

Goicoechea, Javier R.; Cuadrado, Sara; Pety, Jérôme; Bron, Emeric; Black, John H.; Cernicharo, José; Chapillon, Edwige; Fuente, Asunción; Gerin, Maryvonne

2017-05-01

We report high angular resolution (4.9'' × 3.0'') images of reactive ions SH+, HOC+, and SO+ toward the Orion Bar photodissociation region (PDR). We used ALMA-ACA to map several rotational lines at 0.8 mm, complemented with multi-line observations obtained with the IRAM 30 m telescope. The SH+ and HOC+ emission is restricted to a narrow layer of 2''- to 10''-width (≈800 to 4000 AU depending on the assumed PDR geometry) that follows the vibrationally excited H emission. Both ions efficiently form very close to the H/H2 transition zone, at a depth of AV ≲ 1 mag into the neutral cloud, where abundant C+, S2* coexist. SO+ peaks slightly deeper into the cloud. The observed ions have low rotational temperatures (Trot ≈ 10-30 K ≪ Tk) and narrow line-widths ( 2-3 km s-1), a factor of ≃2 narrower that those of the lighter reactive ion CH+. This is consistent with the higher reactivity and faster radiative pumping rates of CH+ compared to the heavier ions, which are driven relatively more quickly toward smaller velocity dispersion by elastic collisions and toward lower Trot by inelastic collisions. We estimate column densities and average physical conditions from an excitation model (n(H2) ≈ 105-106 cm-3, n(e-) ≈ 10 cm-3, and Tk ≈ 200 K). Regardless of the excitation details, SH+ and HOC+ clearly trace the most exposed layers of the UV-irradiated molecular cloud surface, whereas SO+ arises from slightly more shielded layers. This paper makes use of the following ALMA data: ADS/JAO.ALMA#2012.1.00352.S. ALMA is a partnership of ESO (representing its member states), NSF (USA), and NINS (Japan), together with NRC (Canada), and NSC and ASIAA (Taiwan), in cooperation with the Republic of Chile. The Joint ALMA Observatory is operated by ESO, AUI/NRAO, and NAOJ.Includes IRAM 30 m telescope observations. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain).

Nascent bipolar outflows associated with the first hydrostatic core candidates Barnard 1b-N and 1b-S

NASA Astrophysics Data System (ADS)

Gerin, M.; Pety, J.; Fuente, A.; Cernicharo, J.; Commerçon, B.; Marcelino, N.

2015-05-01

In the theory of star formation, the first hydrostatic core (FHSC) phase is a critical step in which a condensed object emerges from a prestellar core. This step lasts about one thousand years, a very short time compared with the lifetime of prestellar cores, and therefore is hard to detect unambiguously. We present IRAM Plateau de Bure observations of the Barnard 1b dense molecular core, combining detections of H2CO and CH3OH spectral lines and dust continuum at 2.3'' resolution (~500 AU). The two compact cores B1b-N and B1b-S are detected in the dust continuum at 2 mm, with fluxes that agree with their spectral energy distribution. Molecular outflows associated with both cores are detected. They are inclined relative to the direction of the magnetic field, in agreement with predictions of collapse in turbulent and magnetized gas with a ratio of mass to magnetic flux somewhat higher than the critical value, μ ~ 2-7. The outflow associated with B1b-S presents sharp spatial structures, with ejection velocities of up to ~7 km s-1 from the mean velocity. Its dynamical age is estimated to be ~2000 yr. The B1b-N outflow is smaller and slower, with a short dynamical age of ~1000 yr. The B1b-N outflow mass, mass-loss rate, and mechanical luminosity agree well with theoretical predictions of FHSC. These observations confirm the early evolutionary stage of B1b-N and the slightly more evolved stage of B1b-S. Based on observations carried out with the IRAM Plateau de Bure Interferometer. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain).Appendices are available in electronic form at http://www.aanda.orgFITS files for the H2CO and CH3OH mosaics are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/577/L2

Searching for trans ethyl methyl ether in Orion KL⋆

NASA Astrophysics Data System (ADS)

Tercero, B.; Cernicharo, J.; López, A.; Brouillet, N.; Kolesniková, L.; Motiyenko, R. A.; Margulès, L.; Alonso, J. L.; Guillemin, J.-C.

2015-10-01

We report on the tentative detection of trans ethyl methyl ether (tEME), t-CH3CH2OCH3, through the identification of a large number of rotational lines from each one of the spin states of the molecule towards Orion KL. We also search for gauche-trans-n-propanol, Gt-n-CH3CH2CH2OH, an isomer of tEME in the same source. We have identified lines of both species in the IRAM 30 m line survey and in the ALMA Science Verification data. We have obtained ALMA maps to establish the spatial distribution of these species. Whereas tEME mainly arises from the compact ridge component of Orion, Gt-n-propanol appears at the emission peak of ethanol (south hot core). The derived column densities of these species at the location of their emission peaks are ≤(4.0 ± 0.8) × 1015 cm-2 and ≤(1.0 ± 0.2) × 1015 cm-2 for tEME and Gt-n-propanol, respectively. The rotational temperature is ~100 K for both molecules. We also provide maps of CH3OCOH, CH3CH2OCOH, CH3OCH3, CH3OH, and CH3CH2OH to compare the distribution of these organic saturated O-bearing species containing methyl and ethyl groups in this region. Abundance ratios of related species and upper limits to the abundances of non-detected ethers are provided. We derive an abundance ratio N(CH3OCH3)/N(tEME) ≥ 150 in the compact ridge of Orion. This paper makes use of the following ALMA data: ADS/JAO.ALMA#2011.0.00009.SV. ALMA is a partnership of ESO (representing its member states), NSF (USA), and NINS (Japan) with NRC (Canada), NSC, and ASIAA (Taiwan), and KASI (Republic of Korea), in cooperation with the Republic of Chile. The Joint ALMA Observatory is operated by ESO, AUI/NRAO, and NAOJ. This work was also based on observations carried out with the IRAM 30-m telescope. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain).Appendix A is available in electronic form at http://www.aanda.org

HMMerThread: Detecting Remote, Functional Conserved Domains in Entire Genomes by Combining Relaxed Sequence-Database Searches with Fold Recognition

PubMed Central

Bradshaw, Charles Richard; Surendranath, Vineeth; Henschel, Robert; Mueller, Matthias Stefan; Habermann, Bianca Hermine

2011-01-01

Conserved domains in proteins are one of the major sources of functional information for experimental design and genome-level annotation. Though search tools for conserved domain databases such as Hidden Markov Models (HMMs) are sensitive in detecting conserved domains in proteins when they share sufficient sequence similarity, they tend to miss more divergent family members, as they lack a reliable statistical framework for the detection of low sequence similarity. We have developed a greatly improved HMMerThread algorithm that can detect remotely conserved domains in highly divergent sequences. HMMerThread combines relaxed conserved domain searches with fold recognition to eliminate false positive, sequence-based identifications. With an accuracy of 90%, our software is able to automatically predict highly divergent members of conserved domain families with an associated 3-dimensional structure. We give additional confidence to our predictions by validation across species. We have run HMMerThread searches on eight proteomes including human and present a rich resource of remotely conserved domains, which adds significantly to the functional annotation of entire proteomes. We find ∼4500 cross-species validated, remotely conserved domain predictions in the human proteome alone. As an example, we find a DNA-binding domain in the C-terminal part of the A-kinase anchor protein 10 (AKAP10), a PKA adaptor that has been implicated in cardiac arrhythmias and premature cardiac death, which upon stress likely translocates from mitochondria to the nucleus/nucleolus. Based on our prediction, we propose that with this HLH-domain, AKAP10 is involved in the transcriptional control of stress response. Further remotely conserved domains we discuss are examples from areas such as sporulation, chromosome segregation and signalling during immune response. The HMMerThread algorithm is able to automatically detect the presence of remotely conserved domains in proteins based on weak sequence similarity. Our predictions open up new avenues for biological and medical studies. Genome-wide HMMerThread domains are available at http://vm1-hmmerthread.age.mpg.de. PMID:21423752

Resolving the circumstellar environment of the B[e] star V921 Scorpii in the near-infrared with VLTI/AMBER

NASA Astrophysics Data System (ADS)

Kreplin, A.; Kraus, S.; Hofmann, K.-H.; Schertl, D.; Weigelt, G.; Driebe, T.

2012-01-01

Aims: We study the AU-scale circumstellar environment of the unclassified B[e] star V921 Sco in the near-infrared. For interpreting the observations, we employ temperature-gradient disk models. Methods: Using the near-infrared beam combiner instrument AMBER, we recorded spectrally dispersed (spectral resolution R = 35) interferograms in the H and K bands. To obtain an improved calibration of the visibilities, we developed a method that is able to equalize the histograms of the optical path difference of target and calibrator. We fit temperature-gradient disk models to the visibilities and spectral energy distribution (SED) to analyze the circumstellar dust geometry. Results: We derived a geometric ring-fit radius of 2.10 ± 0.16 mas in the K band. If we adopt the distance of 1150 ± 150 pc reported elsewhere, we obtain a ring-fit radius of 2.4 AU, which is slightly smaller than the 3.5 AU dust sublimation radius predicted by the size-luminosity relation. The fitted H-band radius of 1.61 ± 0.23 mas (1.85 AU) is found to be more compact than the K-band radius. The best-fit temperature-gradient disk model has an inner disk radius of ~1.45 AU, an inner-edge disk temperature T0 = 1533 K, and a temperature-gradient exponent q = 0.46 suggesting a flared disk geometry. Conclusions: The distance and luminosity of V921 Sco are not well known. If we assume a distance of 1150 ± 150 pc, we derive a ring-fit radius of ~2.4 AU, which is approximately consistent with the computed temperature-gradient disk model with inner and outer ring radii of 1.45 and 8.5 AU, respectively. If the inner radius of V921 Sco is more compact than the sublimation radius, this compact observed size can be explained by emitting material (e.g., a gaseous disk) inside the dust sublimation radius, as suggested for several other B[e] stars. Based on observations made with ESO telescopes at Paranal Observatory under program ID (MPG-VISA GTO): 079.C-0212(A).

HCHO and NO2 MAXDOAS retrieval strategies harmonization: Recent results from the EU FP7 project QA4ECV

NASA Astrophysics Data System (ADS)

Pinardi, Gaia; Peters, Enno; Hendrick, François; Gielen, Clio; Van Roozendael, Michel; Richter, Andreas; Piters, Ankie; Wagner, Thomas; Wang, Yang; Drosoglou, Theano; Bais, Alkis; Wang, Shanshan; Saiz-Lopez, Alfonso

2016-04-01

During the last decade, it has been extensively demonstrated that MAXDOAS is a useful and reliable technique to retrieve integrated column amounts of tropospheric trace gases and aerosols, as well as information on their vertical distributions. Since it is based on optical remote-sensing in the UV-visible region like nadir backscatter space-borne sensors, MAXDOAS is also increasingly recognized as a reference technique for validating satellite nadir observations of air quality species like NO2 and HCHO. However, building up an harmonized network of MAXDOAS spectrometers requires significant efforts in terms of common retrieval strategies and best-practices definitions. Within the EU FP7 project QA4ECV (Quality Assurance for Essential Climate Variables; see http://www.qa4ecv.eu/), harmonization activities have been initiated focusing on the two main steps of the MAXDOAS retrieval, i.e. the DOAS spectral fit providing the so-called differential slant column densities (DSCDs) and the conversion of the retrieved DSCDs to vertical profiles and/or vertical column densities (VCDs). Regarding the first step, the DOAS settings for HCHO and NO2 are optimized through an intercomparison exercise of slant column retrievals involving 15 groups of the MAXDOAS community including the QA4ECV partners, and based on the radiance spectra acquired during the MAD-CAT campaign held in Mainz (Germany) in June-July 2013 (see http://joseba.mpch-mainz.mpg.de/mad_cat.htm). The harmonization of the second step is done through the application of an AMF (aim mass factor) look-up table (LUT) approach on the optimized NO2 and HCHO DSCDs. The AMF LUTs depend on entry parameters like SZA, elevation and relative azimuth angles, wavelength, boundary layer height, AOD, and surface albedo. The advantages and drawbacks of the LUT approach are illustrated at several stations through comparison of the derived VCDs with those retrieved using the more sophisticated Optimal-Estimation-based profiling method. Recommendations for both MAXDOAS retrieval steps will be given in conclusion.

Identification of Recurrent Novae in M31

NASA Astrophysics Data System (ADS)

Shafter, Allen W.; Rector, T. A.; Schweizer, F.; Bryan, J.

2014-01-01

Over roughly the past century a total of more than 900 optical transient events have been recorded in M31, the vast majority of which are believed to represent eruptions of classical novae. The impressive dataset of nova positions put together by Pietsch (http://www.mpe.mpg.de m31novae/opt/m31/) provides the opportunity to search for multiple nova outbursts from the same progenitor system, and thus to characterize the population of recurrent novae (RNe) in M31. In order to identify RNe candidates, we have searched for spatial near coincidences among the 945 recorded novae given in the Pietsch catalog through the end of August 2013. Given that the positions of many of the early novae are quite uncertain, we have set our initial screen to include nova pairs with nominal separations less than or equal to 6 arcsec. We have identified a total of 102 novae that pass this coarse screen. Of these, 78 novae form 39 pairs, 15 form five triples, four novae are part of a quad, and five novae form a quint. As demonstrated by Shafter, Rice and Daub (2009, presented at the "Wild Stars in the Old West II" conference, mintaka.sdsu.edu/faculty/shafter/extragalactic_novae/RNePoster4.pdf), the majority of the 102 novae surviving our initial screen are expected to be associated with chance positional near coincidences (especially near the nucleus), and are not RNe. To decide which candidates are indeed RNe, we have undertaken a study to locate the original discovery plates, CCD images or published finding charts, and to perform the necessary astrometry to identify which of our candidate RNe are chance positional coincidences, and which are RNe. For each candidate, we estimate the probability that the object is a chance positional coincidence as in Shafter et al. (2009). To date, we have been successful in identifying finding charts or original images for most of the candidates, and have found a total of 23 nova outbursts in M31 associated with 10 systems that are almost certainly RNe.

The 2011 Periastron Passage of the Be Binary δ Scorpii

NASA Astrophysics Data System (ADS)

Miroshnichenko, A. S.; Pasechnik, A. V.; Manset, N.; Carciofi, A. C.; Rivinius, Th.; Štefl, S.; Gvaramadze, V. V.; Ribeiro, J.; Fernando, A.; Garrel, T.; Knapen, J. H.; Buil, C.; Heathcote, B.; Pollmann, E.; Mauclaire, B.; Thizy, O.; Martin, J.; Zharikov, S. V.; Okazaki, A. T.; Gandet, T. L.; Eversberg, T.; Reinecke, N.

2013-04-01

We describe the results of the world-wide observing campaign of the highly eccentric Be binary system δ Scorpii 2011 periastron passage which involved professional and amateur astronomers. Our spectroscopic observations provided a precise measurement of the system orbital period at 10.8092 ± 0.0005 yr. Fitting of the He II 4686 Å line radial velocity curve determined the periastron passage time on 2011 July 3, UT 9:20 with a 0.9-day uncertainty. Both these results are in a very good agreement with recent findings from interferometry. We also derived new evolutionary masses of the binary components (13 and 8.2 M ⊙) and a new distance of 136 pc from the Sun, consistent with the HIPPARCOS parallax. The radial velocity and profile variations observed in the Hα line near the 2011 periastron reflected the interaction of the secondary component and the circumstellar disk around the primary component. Using these data, we estimated a disk radius of 150 R ⊙. Our analysis of the radial velocity variations measured during the periastron passage time in 2000 and 2011 along with those measured during the 20th century, the high eccentricity of the system, and the presence of a bow shock-like structure around it suggest that δ Sco might be a runaway triple system. The third component should be external to the known binary and move on an elliptical orbit that is tilted by at least 40° with respect to the binary orbital plane for such a system to be stable and responsible for the observed long-term radial velocity variations. This paper is partially based on observations obtained at the Canada-France-Hawaii Telescope (CFHT) which is operated by the National Research Council of Canada, the Institut National des Sciences de l'Univers of the Centre National de la Recherche Scientifique de France, and the University of Hawaii, the 2.2 m MPG telescope operated at ESO/La Silla under program IDs 086.A-9019 and 087.A-9005, the IAC80 telescope in the Spanish Observatorio del Teide of the Instituto de Astrofiísica de Canarias, and data from the ELODIE archive at the Observatoire de Haute-Provence.

Prevalence and Determinants of Oral Human Papillomavirus Infection in 500 Young Adults from Italy

PubMed Central

Höfler, Daniela; Menegaldo, Anna; Giorgi Rossi, Paolo; Del Mistro, Annarosa; Da Mosto, Maria Cristina; Pawlita, Michael

2017-01-01

Although the prevalence of human papillomavirus (HPV)-related oropharyngeal squamous cell carcinoma (OPSCC) is increasing in developed countries and becoming a relevant health issue, the natural history of oral HPV infection is still unclear. Estimating the infection’s prevalence in specific populations and identifying risk factors can widen our understanding of its natural history and help to delineate appropriate prevention strategies. This study sought to (i) determine oral HPV prevalence and genotype distribution in a large series of young Italian adults, (ii) validate an oral rinse sampling/storage protocol, and (iii) pinpoint factors associated with oral HPV infection. Five hundred students, nurses, and technicians (19–35 years-old) studying and working at/for the University of Padua were recruited. Each participant was provided with an oral rinse sampling kit and instructions for use. They were also asked to complete an anonymous questionnaire concerning their demographic characteristics and behaviors. The questionnaires and oral rinse containers were labeled with the same identification code number. The oral rinse samples were tested using a bead-based multiplex BSGP5+/6+-MPG genotyping assay which amplifies the L1 region of 51 mucosal HPV types. The prevalence of oral HPV infection was 4.0% (95% confidence interval (CI), 2.5%-6.1%); those of 14 high-risk HPV types and of HPV-type 16 (HPV16) infection were 2.2% (95% CI, 1.1%-3.9%) and 1.6% (95% CI, 0.6%-3.1%), respectively. HPV16 was the most frequent genotype (40.0% of oral HPV infections). No association was found between oral infection and the co-variables studied (gender, tobacco, alcohol and illegal drug use, number of sex and oral sex partners, HPV vaccination status, history of HPV and sexually transmitted infections, abnormal pap smears, recurrent tonsillitis and tonsillectomy). The oral rinse sampling protocol outlined here proved to be simple, efficient and well tolerated, and the prevalence rate can be considered reliable and thus useful to guide future research. Determinants of oral HPV infection are still unclear and further studies are certainly warranted. PMID:28103272

SOLIS IV. Hydrocarbons in the OMC-2 FIR4 Region, a Probe of Energetic Particle Irradiation of the Region

NASA Astrophysics Data System (ADS)

Favre, C.; Ceccarelli, C.; López-Sepulcre, A.; Fontani, F.; Neri, R.; Manigand, S.; Kama, M.; Caselli, P.; Jaber Al-Edhari, A.; Kahane, C.; Alves, F.; Balucani, N.; Bianchi, E.; Caux, E.; Codella, C.; Dulieu, F.; Pineda, J. E.; Sims, I. R.; Theulé, P.

2018-06-01

We report new interferometric images of cyclopropenylidene, c-C3H2, toward the young protocluster OMC-2 FIR 4. The observations were performed at 82 and 85 GHz with the NOrthern Extended Millimeter Array (NOEMA) as part of the project Seeds Of Life In Space (SOLIS). In addition, IRAM-30 m data observations were used to investigate the physical structure of OMC-2 FIR 4. We find that the c-C3H2 gas emits from the same region where previous SOLIS observations showed bright HC5N emission. From a non-LTE analysis of the IRAM-30 m data, the c-C3H2 gas has an average temperature of ∼40 K, a H2 density of ∼3 × 105 cm‑3, and a c-C3H2 abundance relative to H2 of (7 ± 1) × 10‑12. In addition, the NOEMA observations provide no sign of significant c-C3H2 excitation temperature gradients across the region (about 3–4 beams), with T ex in the range 8 ± 3 up to 16 ± 7 K. We thus infer that our observations are inconsistent with a physical interaction of the OMC-2 FIR 4 envelope with the outflow arising from OMC-2 FIR 3, as claimed by previous studies. The comparison of the measured c-C3H2 abundance with the predictions from an astrochemical PDR model indicates that OMC-2 FIR 4 is irradiated by an FUV field ∼1000 times larger than the interstellar one, and by a flux of ionizing particles ∼4000 times larger than the canonical value of 1 × 10‑17 s‑1 from the Galaxy cosmic rays, which is consistent with our previous HC5N observations. This provides an important and independent confirmation of other studies that one, or more, source inside the OMC-2 FIR 4 region emits energetic (≥10 MeV) particles. Based on observations carried out under project number L15AA with the IRAM NOEMA Interferometer. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain).

Study of the production of and hadrons in pp collisions and first measurement of the branching fraction

NASA Astrophysics Data System (ADS)

Aaij, R.; Adeva, B.; Adinolfi, M.; Affolder, A.; Ajaltouni, Z.; Akar, S.; Albrecht, J.; Alessio, F.; Alexander, M.; Ali, S.; Alkhazov, G.; Alvarez Cartelle, P.; Alves, A. A., Jr.; Amato, S.; Amerio, S.; Amhis, Y.; An, L.; Anderlini, L.; Anderson, J.; Andreassi, G.; Andreotti, M.; Andrews, J. E.; Appleby, R. B.; Aquines Gutierrez, O.; Archilli, F.; d'Argent, P.; Artamonov, A.; Artuso, M.; Aslanides, E.; Auriemma, G.; Baalouch, M.; Bachmann, S.; Back, J. J.; Badalov, A.; Baesso, C.; Baldini, W.; Barlow; , R. J.Barschel, C.; Barsuk, S.; Barter, W.; Batozskaya, V.; Battista, V.; Bay, A.; Beaucourt, L.; Beddow, J.; Bedeschi, F.; Bediaga, I.; Bel, L. J.; Bellee, V.; Belloli, N.; Belyaev, I.; Ben-Haim, E.; Bencivenni, G.; Benson, S.; J., Benton; Berezhnoy, A.; Bernet, R.; Bertolin, A.; Bettler, M.-O.; van Beuzekom, M.; Bien, A.; Bifani, S.; Billoir, P.; Bird, T.; Birnkraut, A.; Bizzeti, A.; Blake, T.; Blanc, F.; Blouw, J.; Blusk, S.; Bocci, V.; Bondar, A.; Bondar, N.; Bonivento, W.; Borghi, S.; Borsato, M.; Bowcock, T. J. V.; Bowen, E.; Bozzi, C.; Braun, S.; Britsch, M.; Britton, T.; Brodzicka, J.; Brook, N. H.; Buchanan, E.; Bursche, A.; Buytaert, J.; Cadeddu, S.; Calabrese, R.; Calvi, M.; Calvo Gomez, M.; Campana, P.; Campora Perez, D.; Capriotti, L.; Carbone, A.; Carboni, G.; Cardinale, R.; Cardini, A.; Carniti, P.; Carson, L.; Carvalho, Akiba K.; Casse, G.; Cassina, L.; Castillo Garcia, L.; Cattaneo, M.; Cauet, Ch.; Cavallero, G.; Cenci, R.; Charles, M.; Charpentier, Ph.; Chefdeville, M.; Chen, S.; Cheung, S.-F.; Chiapolini, N.; Chrzaszcz, M.; Cid Vidal, X.; Ciezarek, G.; Clarke, P. E. L.; Clemencic, M.; Cliff, H. V.; Closier, J.; Coco, V.; Cogan, J.; Cogneras, E.; Cogoni, V.; Cojocariu, L.; Collazuol, G.; Collins, P.; Comerma-Montells, A.; Contu, A.; Cook, A.; Coombes, M.; Coquereau, S.; Corti, G.; Corvo, M.; Couturier, B.; Cowan, G. A.; Craik, D. C.; Crocombe, A.; Cruz Torres, M.; Cunliffe, S.; Currie, R.; D'Ambrosio, C.; Dall'Occo, E.; Dalseno, J.; David, P. N. Y.; Davis, A.; De Bruyn, K.; De Capua, S.; De Cian, M.; De Miranda, J. M.; De Paula, L.; De Simone, P.; Dean, C.-T.; Decamp, D.; Deckenhoff, M.; Del Buono, L.; Déléage, N.; Demmer, M.; Derkach, D.; Deschamps, O.; Dettori, F.; Dey, B.; Di Canto, A.; Di Ruscio, F.; Dijkstra, H.; Donleavy, S.; Dordei, F.; Dorigo, M.; Dosil Suárez, A.; Dossett, D.; Dovbnya, A.; Dreimanis, K.; Dufour, L.; Dujany, G.; Dupertuis, F.; Durante, P.; Dzhelyadin, R.; Dziurda, A.; Dzyuba, A.; Easo, S.; Egede, U.; Egorychev, V.; Eidelman, S.; Eisenhardt, S.; Eitschberger, U.; Ekelhof, R.; Eklund, L.; El Rifai, I.; Elsasser, Ch.; Ely, S.; Esen, S.; Evans, H. M.; Evans, T.; Falabella, A.; Färber, C.; Farley, N.; Farry, S.; Fay, R.; Ferguson, D.; Fernandez Albor, V.; Ferrari, F.; Ferreira Rodrigues, F.; Ferro-Luzzi, M.; Filippov, S.; Fiore, M.; Fiorini, M.; Firlej, M.; Fitzpatrick, C.; Fiutowski, T.; Fohl, K.; Fol, P.; Fontana, M.; Fontanelli, F.; Forty, R.; Francisco, O.; Frank, M.; Frei, C.; Frosini, M.; Fu, J.; Furfaro, E.; Gallas, A., Torreira; Galli, D.; Gallorini, S.; Gambetta, S.; Gandelman, M.; Gandini, P.; Gao, Y.; García Pardiñas, J.; Garra Tico, J.; Garrido, L.; Gascon, D.; Gaspar, C.; Gauld, R.; Gavardi, L.; Gazzoni, G.; Gerick, D.; Gersabeck, E.; Gersabeck, M.; Gershon, T.; Ghez, Ph.; Gianì, S.; Gibson, V.; Girard, O. G.; Giubega, L.; Gligorov, V. V.; Göbel, C.; Golubkov, D.; Golutvin, A.; Gomes, A.; Gotti, C.; Grabalosa Gándara, M.; Graciani Diaz, R.; Granado Cardoso, L. A.; Graugés, E.; Graverini, E.; Graziani, G.; Grecu, A.; Greening, E.; Gregson, S.; Griffith, P.; Grillo, L.; Grünberg, O.; Gui, B.; Gushchin, E.; Guz, Yu.; Gys, T.; Hadavizadeh, T.; Hadjivasiliou, C.; Haefeli, G.; Haen, C.; Haines, S. C.; Hall, S.; Hamilton, B.; Han, X.; Hansmann-Menzemer, S.; Harnew, N.; Harnew, S. T.; Harrison, J.; He, J.; Head, T.; Heijne, V.; Hennessy, K.; Henrard, P.; Henry, L.; van Herwijnen, E.; Heß, M.; Hicheur, A.; Hill, D.; Hoballah, M.; Hombach, C.; Hulsbergen, W.; Humair, T.; Hussain, N.; Hutchcroft, D.; Hynds, D.; Idzik, M.; Ilten, P.; Jacobsson, R.; Jaeger, A.; Jalocha, J.; Jans, E.; Jawahery, A.; Jing; M. F., John; Johnson, D.; Jones, C. F.; Joram, C.; Jost, B.; Jurik, N.; Kandybei, S.; Kanso, W.; Karacson, M.; Karbach, T. M.; Karodia, S.; Kecke, M.; Kelsey, M.; Kenyon, I. R.; Kenzie, M.; Ketel, T.; Khanji, B.; Khurewathanakul, C.; Klaver, S.; Klimaszewski, K.; Kochebina, O.; Kolpin, M.; Komarov, I.; Koopman, R. F.; Koppenburg, P.; Kozeiha, M.; Kravchuk, L.; Kreplin, K.; Kreps, M.; Krocker, G.; Krokovny, P.; Kruse, F.; Krzemien, W.; Kucewicz, W.; Kucharczyk, M.; Kudryavtsev, V.; Kuonen, A. K.; Kurek, K.; Kvaratskheliya, T.; Lacarrere, D.; Lafferty, G.; Lai, A.; Lambert, D.; Lanfranchi, G.; Langenbruch, C.; Langhans, B.; Latham, T.; Lazzeroni, C.; Le Gac, R.; van Leerdam, J.; Lees, J.-P.; Lefèvre, R.; Leflat, A.; Lefrançois, J.; Cid Lemos, E.; Leroy, O.; Lesiak, T.; Leverington, B.; Li, Y.; Likhomanenko, T.; Liles, M.; Lindner, R.; Linn, C.; Lionetto, F.; Liu, B.; Liu, X.; Loh, D.; Longstaff, I.; Lopes, J. H.; Lucchesi, D.; Lucio Martinez, M.; Luo, H.; Lupato, A.; Luppi, E.; Lupton, O.; Lusiani, A.; Machefert, F.; Maciuc, F.; Maev, O.; Maguire, K.; Malde, S.; Malinin, A.; Manca, G.; Mancinelli, G.; Manning, P.; Mapelli, A.; Maratas, J.; Marchand, J. F.; Marconi, U.; Marin Benito, C.; Marino, P.; Marks, J.; Martellotti, G.; Martin, M.; Martinelli, M.; Martinez Santos, D.; Martinez Vidal, F.; Martins Tostes, D.; Massafferri, A.; Matev, R.; Mathad, A.; Mathe, Z.; Matteuzzi, C.; Mauri, A.; Maurin, B.; Mazurov, A.; McCann, M.; McCarthy, J.; McNab, A.; McNulty, R.; Meadows, B.; Meier, F.; Meissner, M.; Melnychuk, D.; Merk, M.; Michielin, E.; Milanes, D. A.; Minard, M.-N.; Mitzel, D. S.; Molina Rodriguez, J.; Monroy, I. A.; Monteil, S.; Morandin, M.; Morawski, P.; Mordà, A.; Morello, M. J.; Moron, J.; Morris, A. B.; Mountain, R.; Muheim, F.; Müller, D.; Müller, J.; Müller, K.; Müller, V.; Mussini, M.; Muster, B.; Naik, P.; Nakada, T.; Nandakumar, R.; Nandi, A.; Nasteva, I.; Needham, M.; Neri, N.; Neubert, S.; Neufeld, N.; Neuner, M.; Nguyen, A. D.; Nguyen, T. D.; Nguyen-Mau, C.; Niess, V.; Niet, R.; Nikitin, N.; Nikodem, T.; Ninci, D.; Novoselov, A.; O'Hanlon, D. P.; Oblakowska-Mucha, A.; Obraztsov, V.; Ogilvy, S.; Okhrimenko, O.; Oldeman, R.; Onderwater, C. J. G.; Osorio Rodrigues, B.; Otalora Goicochea, J. M.; Otto, A.; Owen, P.; Oyanguren, A.; Palano, A.; Palombo, F.; Palutan, M.; Panman, J.; Papanestis, A.; Pappagallo, M.; Pappalardo, L. L.; Pappenheimer, C.; Parkes, C.; Passaleva, G.; Patel, G. D.; Patel, M.; Patrignani, C.; Pearce, A.; Pellegrino, A.; Penso, G.; Pepe Altarelli, M.; Perazzini, S.; Perret, P.; Pescatore, L.; Petridis, K.; Petrolini, A.; Petruzzo, M.; Picatoste Olloqui, E.; Pietrzyk, B.; Pilař, T.; Pinci, D.; Pistone, A.; Piucci, A.; Playfer, S.; Plo Casasus, M.; Poikela, T.; Polci, F.; Poluektov, A.; Polyakov, I.; Polycarpo, E.; Popov, A.; Popov, D.; Popovici, B.; Potterat, C.; Price, E.; Price, J. D.; Prisciandaro, J.; Pritchard, A.; Prouve, C.; Pugatch, V.; Puig Navarro, A.; Punzi, G.; Qian, W.; Quagliani, R.; Rachwal, B.; Rademacker, J. H.; Rama, M.; Rangel, M. S.; Raniuk, I.; Rauschmayr, N.; Raven, G.; Redi, F.; Reichert, S.; Reid, M. M.; dos Reis, A. C.; Ricciardi, S.; Richards, S.; Rihl, M.; Rinnert, K.; Rives Molina, V.; Robbe, P.; Rodrigues Rodrigues, E. A. B.; Rodriguez Lopez, J. A.; Rodriguez Perez, P.; Roiser, S.; Romanovsky, V.; Romero Vidal A.; Ronayne, W. J.; Rotondo, M.; Rouvinet, J.; Ruf, T.; Ruiz Valls, P.; Saborido Silva, J. J.; Sagidova, N.; Sail, P.; Saitta, B.; Salustino, Guimaraes V.; Sanchez, Mayordomo S.; Sanmartin, Sedes B.; Santacesaria, R.; Santamarina, Rios C.; Santimaria, M.; Santovetti, E.; Sarti, A.; Satriano, C.; Satta, A.; Saunders, D. M.; Savrina, D.; Schiller, M.; Schindler, H.; Schlupp, M.; Schmelling, M.; Schmelzer, T.; Schmidt, B.; Schneider, O.; Schopper, A.; Schubiger, M.; Schune, M.-H.; Schwemmer, R.; Sciascia, B.; Sciubba, A.; Semennikov, A.; Serra, N.; Serrano, J.; Sestini, L.; Seyfert, P.; Shapkin, M.; Shapoval, I.; Shcheglov, Y.; Shears, T.; Shekhtman, L.; Shevchenko, V.; Shires, A.; Siddi, B. G.; Silva Coutinho, R.; Silva de Oliveira, L.; Simi, G.; Sirendi, M.; Skidmore, N.; Skwarnicki, T.; Smith, E.; Smith, E.; Smith, I. T.; Smith, J.; Smith, M.; Snoek, H.; Sokoloff, M. D.; Soler, F. J. P.; Soomro, F.; Souza, D.; Souza De Paula, B.; Spaan, B.; Spradlin, P.; Sridharan, S.; Stagni, F.; Stahl, M.; Stahl, S.; Stefkova, S.; Steinkamp, O.; Stenyakin, O.; Stevenson, S.; Stoica, S.; Stone, S.; Storaci, B.; Stracka, S.; Straticiuc, M.; Straumann, U.; Sun, L.; Sutcliffe, W.; Swientek, K.; Swientek, S.; Syropoulos, V.; Szczekowski, M.; Szczypka, P.; Szumlak, T.; T'Jampens, S.; Tayduganov, A.; Tekampe, T.; Teklishyn, M.; Tellarini, G.; Teubert, F.; Thomas, C.; E., Thomas; van Tilburg, J.; Tisserand, V.; Tobin, M.; Todd, J.; Tolk, S.; Tomassetti, L.; Tonelli, D.; Topp-Joergensen, S.; Torr, N.; Tournefier, E.; Tourneur, S.; Trabelsi, K.; M. T., Tran; Tresch, M.; Trisovic, A.; Tsaregorodtsev, A.; Tsopelas, P.; Tuning, N.; Ukleja, A.; Ustyuzhanin, A.; Uwer, U.; Vacca, C.; Vagnoni, V.; Valenti, G.; Vallier, A.; Vazquez Gomez, R.; Vazquez Regueiro, P.; Vázquez Sierra, C.; Vecchi, S.; Velthuis, J. J.; Veltri, M.; Veneziano, G.; Vesterinen, M.; Viaud, B.; Vieira, D.; Vieites Diaz, M.; Vilasis-Cardona, X.; Volkov, V.; Vollhardt, A.; Volyanskyy, D.; Voong, D.; Vorobyev, A.; Vorobyev, V.; Voß, C.; de Vries, J. A.; Waldi, R.; Wallace, C.; Wallace, R.; Walsh, J.; Wandernoth, S.; Wang, J.; Ward, D. R.; N. K., Watson; Websdale, D.; Weiden, A.; Whitehead, M.; Wilkinson, G.; Wilkinson, M.; Williams, M.; Williams, M. P.; Williams, M.; Williams, T.; Wilson, F. F.; Wimberley, J.; Wishahi, J.; Wislicki, W.; Witek, M.; Wormser, G.; Wotton, S. A.; Wright, S.; Wyllie, K.; Xie, Y.; Xu, Z.; Yang, Z.; Yu, Y.; Yuan, X.; Yushchenko, O.; Zangoli, M.; Zavertyaev, M.; Zhang, L.; Zhang, Y.; Zhelezov, A.; Zhokhov, A.; Zhong, L.; Zucchelli, S.; LHCb Collaboration

2016-01-01

The product of the differential production cross-section and the branching fraction of the decay is measured as a function of the beauty hadron transverse momentum, pT, and rapidity, y. The kinematic region of the measurements is pT < 20 GeV/c and 2.0 < y < 4.5. The measurements use a data sample corresponding to an integrated luminosity of 3fb-1 collected by the LHCb detector in pp collisions at centre-of-mass energies in 2011 and in 2012. Based on previous LHCb results of the fragmentation fraction ratio the branching fraction of the decay is measured to be where the first uncertainty is statistical, the second is systematic, the third is due to the uncertainty on the branching fraction of the decay B̅0 → J/ψK̅*(892)0, and the fourth is due to the knowledge of . The sum of the asymmetries in the production and decay between and is also measured as a function of pT and y. The previously published branching fraction of , relative to that of , is updated. The branching fractions of are determined. Supported by CERN and national agencies: CAPES, CNPq, FAPERJ and FINEP (Brazil); NSFC (China); CNRS/IN2P3 (France); BMBF, DFG, HGF and MPG (Germany); INFN (Italy); FOM and NWO (The Netherlands); MNiSW and NCN (Poland); MEN/IFA (Romania); MinES and FANO (Russia); MinECo (Spain); SNSF and SER (Switzerland); NASU (Ukraine); STFC (United Kingdom); NSF (USA). The Tier1 computing centres are supported by IN2P3 (France), KIT and BMBF (Germany), INFN (Italy), NWO and SURF (The Netherlands), PIC (Spain), GridPP (United Kingdom). Individual groups or members have received support from EPLANET, Marie Skłodowska-Curie Actions and ERC (European Union), Conseil général de Haute-Savoie, Labex ENIGMASS and OCEVU, Région Auvergne (France), RFBR (Russia), XuntaGal and GENCAT (Spain), Royal Society and Royal Commission for the Exhibition of 1851 (United Kingdom).

Preliminary Geological Map of the Ac-H-12 Toharu Quadrangle of Ceres: An Integrated Mapping Study Using Dawn Spacecraft Data

NASA Astrophysics Data System (ADS)

Mest, S. C.; Williams, D. A.; Crown, D. A.; Yingst, R. A.; Buczkowski, D.; Schenk, P.; Scully, J. E. C.; Jaumann, R.; Roatsch, T.; Preusker, F.; Platz, T.; Nathues, A.; Hoffmann, M.; Schäfer, M.; Marchi, S.; De Sanctis, M. C.; Russell, C. T.; Raymond, C. A.

2015-12-01

We are using recent data from the Dawn spacecraft to map the geology of the Ac-H-12 Toharu Quadrangle (21-66°S, 90-180°E) of the dwarf planet Ceres in order to examine its surface geology and understand its geologic history. At the time of this writing, mapping was performed on Framing Camera (FC) mosaics from late Approach (1.3 km/px) and Survey (415 m/px) orbits, including clear filter and color images and digital terrain models derived from stereo images. Images from the High Altitude Mapping Orbit (140 m/px) will be used to refine the map in Fall 2015, followed by the Low Altitude Mapping Orbit (35 m/px) starting in December 2015. The quad is named after crater Toharu (87 km diameter; 49°S, 155°E). The southern rim of Kerwan basin (284 km diameter) is visible along the northern edge of the quad, which is preserved as a low-relief scarp. The quad exhibits smooth terrain in the north, and more heavily cratered terrain in the south. The smooth terrain forms nearly flat-lying plains in some areas, such as on the floor and to the southeast of Kerwan, and overlies hummocky materials in other areas. These smooth materials extend over a much broader area outside of the quad, and appear to contain some of the lowest crater densities on Ceres. Impact craters exhibit a range of coinciding sizes and preservation styles. Smaller craters (<40 km) generally appear morphologically "fresh", and their rims are nearly circular and raised above the surrounding terrain. Larger craters, such as Toharu, appear more degraded, exhibiting irregularly shaped, sometimes scalloped, rim structures, and debris lobes on their floors. Numerous craters (> 20 km) contain central mounds; at current FC resolution, it is difficult to discern if these are primary structures (i.e., central peaks) or secondary features. Support of the Dawn Instrument, Operations, & Science Teams is acknowledged. This work is supported by grants from NASA, DLR and MPG.

Preliminary Geological Map of the Ac-H-14 Yalode Quadrangle of Ceres: An Integrated Mapping Study Using Dawn Spacecraft Data

NASA Astrophysics Data System (ADS)

Crown, D. A.; Yingst, R. A.; Mest, S. C.; Platz, T.; Williams, D. A.; Buczkowski, D.; Schenk, P.; Scully, J. E. C.; Jaumann, R.; Roatsch, T.; Preusker, F.; Nathues, A.; Hoffmann, M.; Schäfer, M.; Marchi, S.; De Sanctis, M. C.; Russell, C.; Raymond, C. A.

2015-12-01

We are conducting a geologic mapping investigation of the Ac-H-14 Yalode Quadrangle (21-66°S, 270-360°E) of Ceres to examine its surface geology and geologic history. At the time of this writing, geologic mapping has been performed on Dawn Framing Camera (FC) mosaics from the late Approach phase (up to 1.3 km/px) and Survey orbit (415 m/px), including clear filter and color images and digital terrain models derived from stereo images. In Fall 2015 images from the High Altitude Mapping Orbit (140 m/px) will be used to refine the mapping, followed by the Low Altitude Mapping Orbit (35 m/px) starting in December 2015. The Yalode Quadrangle is dominated by the ~300-km diameter impact basin Yalode and includes rugged and smooth terrains to the east. Yalode basin has a variably preserved rim, which is continuous and sharply defined to the north/northwest and is irregular or degraded elsewhere, and may have an interior ring structure. The basin floor includes hummocky and smooth areas (some bounded by scarps), crater chains, and a lineated zone. High-resolution images will be used to search for volcanic features on the basin floor and in association with basin structures. Yalode basin and its floor deposits appear to have been strongly affected by the Urvara impact to the west. Impact craters in Yalode Quadrangle display a range of preservation states. Degraded features, including Yalode basin and numerous smaller craters, exhibit subdued rims, lack discrete ejecta deposits, and have infilled interiors. More pristine features (including the large unnamed basin in the SE corner of the quadrangle and craters on Yalode basin floor) have well-defined, quasi-circular forms with prominent rims and in some cases discernible ejecta. Some of these craters have bowl-shaped interiors and others contain hills or mounds on their floors. Support of the Dawn Instrument, Operations, and Science Teams is acknowledged. This work is supported by grants from NASA, MPG, and DLR.

The Orion Nebula: Still Full of Surprises

NASA Astrophysics Data System (ADS)

2011-01-01

This ethereal-looking image of the Orion Nebula was captured using the Wide Field Imager on the MPG/ESO 2.2-metre telescope at the La Silla Observatory, Chile. This nebula is much more than just a pretty face, offering astronomers a close-up view of a massive star-forming region to help advance our understanding of stellar birth and evolution. The data used for this image were selected by Igor Chekalin (Russia), who participated in ESO's Hidden Treasures 2010 astrophotography competition. Igor's composition of the Orion Nebula was the seventh highest ranked entry in the competition, although another of Igor's images was the eventual overall winner. The Orion Nebula, also known as Messier 42, is one of the most easily recognisable and best-studied celestial objects. It is a huge complex of gas and dust where massive stars are forming and is the closest such region to the Earth. The glowing gas is so bright that it can be seen with the unaided eye and is a fascinating sight through a telescope. Despite its familiarity and closeness there is still much to learn about this stellar nursery. It was only in 2007, for instance, that the nebula was shown to be closer to us than previously thought: 1350 light-years, rather than about 1500 light-years. Astronomers have used the Wide Field Imager on the MPG/ESO 2.2-metre telescope at ESO's La Silla Observatory in Chile to observe the stars within Messier 42. They found that the faint red dwarfs in the star cluster associated with the glowing gas radiate much more light than had previously been thought, giving us further insights into this famous object and the stars that it hosts. The data collected for this science project, with no original intention to make a colour image, have now been reused to create the richly detailed picture of Messier 42 shown here. The image is a composite of several exposures taken through a total of five different filters. Light that passed through a red filter as well as light from a filter that shows the glowing hydrogen gas, were coloured red. Light in the yellow-green part of the spectrum is coloured green, blue light is coloured blue and light that passed through an ultraviolet filter has been coloured purple. The exposure times were about 52 minutes through each filter. This image was processed by ESO using the observational data found by Igor Chekalin (Russia) [1], who participated in ESO's Hidden Treasures 2010 astrophotography competition [2], organised by ESO in October-November 2010, for everyone who enjoys making beautiful images of the night sky using real astronomical data. Notes [1] Igor searched through ESO's archive and identified datasets that he used to compose his image of Messier 42, which was the seventh highest ranked entry in the competition, out of almost 100 entries. His original work can be seen here. Igor Chekalin was awarded the first prize of the competition for his composition of Messier 78, and he also submitted an image of NGC3169, NGC3166 and SN 2003cg, which was ranked second highest. [2] ESO's Hidden Treasures 2010 competition gave amateur astronomers the opportunity to search through ESO's vast archives of astronomical data, hoping to find a well-hidden gem that needed polishing by the entrants. Participants submitted nearly 100 entries and ten skilled people were awarded some extremely attractive prizes, including an all expenses paid trip for the overall winner to ESO's Very Large Telescope (VLT) on Cerro Paranal, in Chile, the world's most advanced optical telescope. The ten winners submitted a total of 20 images that were ranked as the highest entries in the competition out of the near 100 images. More information ESO, the European Southern Observatory, is the foremost intergovernmental astronomy organisation in Europe and the world's most productive astronomical observatory. It is supported by 15 countries: Austria, Belgium, Brazil, the Czech Republic, Denmark, France, Finland, Germany, Italy, the Netherlands, Portugal, Spain, Sweden, Switzerland and the United Kingdom. ESO carries out an ambitious programme focused on the design, construction and operation of powerful ground-based observing facilities enabling astronomers to make important scientific discoveries. ESO also plays a leading role in promoting and organising cooperation in astronomical research. ESO operates three unique world-class observing sites in Chile: La Silla, Paranal and Chajnantor. At Paranal, ESO operates the Very Large Telescope, the world's most advanced visible-light astronomical observatory and VISTA, the world's largest survey telescope. ESO is the European partner of a revolutionary astronomical telescope ALMA, the largest astronomical project in existence. ESO is currently planning a 42-metre European Extremely Large optical/near-infrared Telescope, the E-ELT, which will become "the world's biggest eye on the sky".

GLoBES: General Long Baseline Experiment Simulator

NASA Astrophysics Data System (ADS)

Huber, Patrick; Kopp, Joachim; Lindner, Manfred; Rolinec, Mark; Winter, Walter

2007-09-01

GLoBES (General Long Baseline Experiment Simulator) is a flexible software package to simulate neutrino oscillation long baseline and reactor experiments. On the one hand, it contains a comprehensive abstract experiment definition language (AEDL), which allows to describe most classes of long baseline experiments at an abstract level. On the other hand, it provides a C-library to process the experiment information in order to obtain oscillation probabilities, rate vectors, and Δχ-values. Currently, GLoBES is available for GNU/Linux. Since the source code is included, the port to other operating systems is in principle possible. GLoBES is an open source code that has previously been described in Computer Physics Communications 167 (2005) 195 and in Ref. [7]). The source code and a comprehensive User Manual for GLoBES v3.0.8 is now available from the CPC Program Library as described in the Program Summary below. The home of GLobES is http://www.mpi-hd.mpg.de/~globes/. Program summaryProgram title: GLoBES version 3.0.8 Catalogue identifier: ADZI_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/ADZI_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 145 295 No. of bytes in distributed program, including test data, etc.: 1 811 892 Distribution format: tar.gz Programming language: C Computer: GLoBES builds and installs on 32bit and 64bit Linux systems Operating system: 32bit or 64bit Linux RAM: Typically a few MBs Classification: 11.1, 11.7, 11.10 External routines: GSL—The GNU Scientific Library, www.gnu.org/software/gsl/ Nature of problem: Neutrino oscillations are now established as the leading flavor transition mechanism for neutrinos. In a long history of many experiments, see, e.g., [1], two oscillation frequencies have been identified: The fast atmospheric and the slow solar oscillations, which are driven by the respective mass squared differences. In addition, there could be interference effects between these two oscillations, provided that the coupling given by the small mixing angle θ is large enough. Such interference effects include, for example, leptonic CP violation. In order to test the unknown oscillation parameters, i.e. the mixing angle θ, the leptonic CP phase, and the neutrino mass hierarchy, new long-baseline and reactor experiments are proposed. These experiments send an artificial neutrino beam to a detector, or detect the neutrinos produced by a nuclear fission reactor. However, the presence of multiple solutions which are intrinsic to neutrino oscillation probabilities [2-5] affect these measurements. Thus optimization strategies are required which maximally exploit complementarity between experiments. Therefore, a modern, complete experiment simulation and analysis tool does not only need to have a highly accurate beam and detector simulation, but also powerful means to analyze correlations and degeneracies, especially for the combination of several experiments. The GLoBES software package is such a tool [6,7]. Solution method: GLoBES is a flexible software tool to simulate and analyze neutrino oscillation long-baseline and reactor experiments using a complete three-flavor description. On the one hand, it contains a comprehensive abstract experiment definition language (AEDL), which makes it possible to describe most classes of long baseline and reactor experiments at an abstract level. On the other hand, it provides a C-library to process the experiment information in order to obtain oscillation probabilities, rate vectors, and Δχ-values. In addition, it provides a binary program to test experiment definitions very quickly, before they are used by the application software. Restrictions: Currently restricted to discrete sets of sources and detectors. For example, the simulation of an atmospheric neutrino flux is not supported. Unusual features: Clear separation between experiment description and the simulation software. Additional comments: To find information on the latest version of the software and user manual, please check the author's web site, http://www.mpi-hd.mpg.de/~globes Running time: The examples included in the distribution take only a few minutes to complete. More sophisticated problems can take up to several days. References [1] V. Barger, D. Marfatia, K. Whisnant, Int. J. Mod. Phys. E 12 (2003) 569, hep-ph/0308123, and references therein. [2] G.L. Fogli, E. Lisi, Phys. Rev. D 54 (1996) 3667, hep-ph/9604415. [3] J. Burguet-Castell, M.B. Gavela, J.J. Gomez-Cadenas, P. Hernandez, O. Mena, Nucl. Phys. B 608 (2001) 301, hep-ph/0103258. [4] H. Minakata, H. Nunokawa, JHEP 0110 (2001) 001, hep-ph/0108085. [5] V. Barger, D. Marfatia, K. Whisnant, Phys. Rev. D 65 (2002) 073023, hep-ph/0112119. [6] P. Huber, M. Lindner, W. Winter, Comput. Phys. Commun. 167 (2005) 195. [7] P. Huber, J. Kopp, M. Lindner, M. Rolinec, W. Winter, Comput. Phys. Commun. 177 (2007) 432.

New species of ice nucleating fungi in soil and air

NASA Astrophysics Data System (ADS)

Froehlich, Janine; Hill, Tom; Franc, Gary; Poeschl, Ulrich

2013-04-01

Primary biological aerosol particles (PBAP) are ubiquitous in the atmosphere (1). Several types of PBAP have been identified as ice nuclei (IN) that can initiate the formation of ice at relatively high temperatures (2, 3). The best-known biological IN are common plant-associated bacteria. The IN activity of these bacteria is due to a surface protein on the outer cell membrane that catalyses ice formation, for which the corresponding gene has been identified and detected by DNA analysis (2). Fungal spores or hyphae can also act as IN, but the biological structures responsible for their IN activity have not yet been elucidated. Furthermore, the abundance, diversity, sources, seasonality, properties, and effects of fungal IN in the atmosphere have neither been characterized nor quantified. Recent studies have shown that airborne fungi are highly diverse (1), and that atmospheric transport leads to efficient exchange of species among different ecosystems (4, 5). The results presented in Fröhlich-Nowoisky et al. 2012 (6) clearly demonstrate the presence of geographic boundaries in the global distribution of microbial taxa in air, and indicate that regional differences may be important for the effects of microorganisms on climate and public health. Thus, the objective of this study is the identification and quantification of ice nuclei-active fungi in and above ecosystems, and the unraveling of IN-active structures in fungi. Results obtained from the analysis of various soil and air samples and the presence of new fungal ice active species will be revealed. Thanks for collaboration and support to M.O. Andreae, J.-D. Förster, I. Germann-Müller, L.E. Hanson, S. Lelieveld, J. Odhiambo Obuya, T. Pooya, and C. Ruzene-Nespoli. The Max Planck Society (MPG), Ice Nuclei research UnIT (INUIT), and the German Research Foundation (PO1013/5-1) are acknowledged for financial support. 1. Fröhlich-Nowoisky, J., et al. (2009) Proc. Natl Acad. Sci., 106, 12814-12819 2. Georgakopoulos, D.G., et al. (2009) Biogeosciences, 6, 721-737 3. Pouleur, S., et al. (1992) Appl. Environ. Microbiol. 58, 2960-2964 4. Burrows, S.M., et al. (2009a) Atmos. Chem. Phys., 9, (23), 9281-9297 5. Burrows, S.M., et al. (2009b) Atmos. Chem. Phys., 9, (23), 9263-9280 6. Fröhlich-Nowoisky, J., et al. (2012) Biogeosciences, 9, 1125-1136

On the discovery of fast molecular gas in the UFO/BAL quasar APM 08279+5255 at z = 3.912

NASA Astrophysics Data System (ADS)

Feruglio, C.; Ferrara, A.; Bischetti, M.; Downes, D.; Neri, R.; Ceccarelli, C.; Cicone, C.; Fiore, F.; Gallerani, S.; Maiolino, R.; Menci, N.; Piconcelli, E.; Vietri, G.; Vignali, C.; Zappacosta, L.

2017-12-01

We have performed a high sensitivity observation of the UFO/BAL quasar APM 08279+5255 at z = 3.912 with NOEMA at 3.2 mm, aimed at detecting fast moving molecular gas. We report the detection of blueshifted CO(4-3) with maximum velocity (v95%) of -1340 km s-1, with respect to the systemic peak emission, and a luminosity of L' = 9.9 × 109μ-1 K km s-1 pc-2, where μ is the lensing magnification factor. We discuss various scenarios for the nature of this emission and conclude that this is the first detection of fast molecular gas at redshift > 3. We derived a mass flow rate of molecular gas in the range Ṁ = 3-7.4 × 103M⊙/yr and momentum boost ṖOF/ṖAGN 2-6, which is therefore consistent with a momentum conserving flow. For the largest ṖOF the scaling is also consistent with an energy conserving flow with an efficiency of 10-20%. The present data can hardly discriminate between the two expansion modes. The mass loading factor of the molecular outflow η = ṀOF/SFR is ≫ 1. We also detected a molecular emission line at a frequency of 94.83 GHz corresponding to a rest-frame frequency of 465.8 GHz; we tentatively identified this frequency with the cation molecule N2H+(5-4), which would be the first detection of this species at high redshift. We discuss the alternative possibility that this emission is due to a CO emission line from the, so far undetected, lens galaxy. Further observations of additional transitions of the same species with NOEMA can discriminate between the two scenarios. This work is based on observations carried out under project numbers S15CW and E15AF with the IRAM NOEMA Interferometer. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain). The reduced spectrum (FITS file) is only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/608/A30

Variable millimetre radiation from the colliding-wind binary Cygnus OB2 #8A

NASA Astrophysics Data System (ADS)

Blomme, R.; Fenech, D. M.; Prinja, R. K.; Pittard, J. M.; Morford, J. C.

2017-12-01

Context. Massive binaries have stellar winds that collide. In the colliding-wind region, various physically interesting processes occur, leading to enhanced X-ray emission, non-thermal radio emission, as well as non-thermal X-rays and gamma-rays. Non-thermal radio emission (due to synchrotron radiation) has so far been observed at centimetre wavelengths. At millimetre wavelengths, the stellar winds and the colliding-wind region emit more thermal free-free radiation, and it is expected that any non-thermal contribution will be difficult or impossible to detect. Aims: We aim to determine if the material in the colliding-wind region contributes substantially to the observed millimetre fluxes of a colliding-wind binary. We also try to distinguish the synchrotron emission from the free-free emission. Methods: We monitored the massive binary Cyg OB2 #8A at 3 mm with the NOrthern Extended Millimeter Array (NOEMA) interferometer of the Institut de Radioastronomie Millimétrique (IRAM). The data were collected in 14 separate observing runs (in 2014 and 2016), and provide good coverage of the orbital period. Results: The observed millimetre fluxes range between 1.1 and 2.3 mJy, and show phase-locked variability, clearly indicating that a large part of the emission is due to the colliding-wind region. A simple synchrotron model gives fluxes with the correct order of magnitude, but with a maximum that is phase-shifted with respect to the observations. Qualitatively this phase shift can be explained by our neglect of orbital motion on the shape of the colliding-wind region. A model using only free-free emission results in only a slightly worse explanation of the observations. Additionally, on the map of our observations we also detect the O6.5 III star Cyg OB2 #8B, for which we determine a 3 mm flux of 0.21 ± 0.033 mJy. Conclusions: The question of whether synchrotron radiation or free-free emission dominates the millimetre fluxes of Cyg OB2 #8A remains open. More detailed modelling of this system, based on solving the hydrodynamical equations, is required to give a definite answer. This work is based on observations carried out under project numbers S14AW and S16AU with the IRAM NOEMA Interferometer. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain).

SmartPill® as an objective parameter for determination of severity and duration of postoperative ileus: study protocol of a prospective, two-arm, open-label trial (the PIDuSA study)

PubMed Central

Vilz, Tim O; Pantelis, Dimitrios; Lingohr, Philipp; Fimmers, Rolf; Esmann, Anke; Randau, Thomas; Kalff, Jörg C; Coenen, Martin; Wehner, Sven

2016-01-01

Introduction Postoperative ileus (POI) is a frequent complication after abdominal surgery (AS). Until today, neither a prophylaxis nor an evidence-based therapy exists. This originates from the absence of objective parameters evaluating the severity and duration of POI resulting in clinical trials of modest quality. The SmartPill®, a capsule which frequently measures pH value, temperature and intraluminal pressure after swallowing, offers an elegant option for analysing gastrointestinal (GI) transit times and smooth muscle activity in vivo. As the use in patients in the first months after AS is not covered by the marketing authorisation, we aim to investigate the safety and feasibility of the SmartPill® immediately after surgery. Additionally, we analyse the influence of prokinetics and laxatives as well as standardised physiotherapy on postoperative bowel contractility, as scientific evidence of its effects is still lacking. Methods and analysis The PIDuSA study is a prospective, single-centre, two-arm, open-label trial. The SmartPill® will be applied to 55 patients undergoing AS having a high risk for POI and 10 patients undergoing extra-abdominal surgery rarely developing POI. The primary objective is the safety of the SmartPill® in patients after surgery on the basis of adverse device effects/serious adverse device effects (ADE/SADE). The sample size suggests that events with a probability of 3% could be seen with a certainty of 80% for at least once in the sample. Secondary objective is the analysis of postoperative intestinal activity in the GI tract in both groups. Furthermore, clinical signs of bowel motility disorders will be correlated to the data measured by the SmartPill® to evaluate its significance as an objective parameter for assessing POI severity. Additionally, effects of prokinetics, laxatives and physiotherapy on postoperative peristaltic activity recorded by the SmartPill® will be analysed. Ethics and dissemination The protocol was approved by the federal authority (94.1.05-5660-8976) and the local ethics committee (092/14-MPG). Findings will be disseminated through publications and conference presentations. Trial registration number NCT02329912; Pre-results. PMID:27401360

Two unusual hepatitis C virus subtypes, 2j and 2q, in Spain: Identification by nested-PCR and sequencing of a NS5B region.

PubMed

Margall, N; March, F; Español, M; Torras, X; Gallego, A; Coll, P

2015-10-01

Many studies have reported the use of the NS5B gene to subtype hepatitis C virus (HCV). Other HCV genes, such as HCV-5' UTR, Core (C) and E1, have also been used. In some studies, NS5B have been used together with 5'-UTR or C genes to improve genotyping results obtained using commercial procedures. Only two studies in Spain have compared molecular techniques versus commercial procedures regarding the efficacy of HCV subtyping. The aim of this study was to determine whether nested PCR and sequencing of a NS5B region was more reliable than commercial procedures to subtype HCV. We analyzed the results of HCV genotyping in [726] serum specimens collected from 2001 to 2013. From 2001 to 2011, we used PCR and INNO-LiPA hybridization or its new version Versant HCV Genotype 2.0 assay (471 samples). From 2012 to 2013, we used nested PCR and sequencing of a NS5B region (255 cases). This method used two pairs of primers to amplify the RNA of the sample converted to DNA by retrotranscription. The amplification product of 270 base pairs was further sequenced. To identify the subtype, the sequences obtained were compared to those in the international database: http://hcv.lanl.gov./content/sequence/, HCV/ToolsOutline.html and Geno2pheno[hcv] http://hcv.bioinf.mpi-inf.mpg.de/index.php. Nested PCR of a NS5B region and sequencing identified all but one subtype (0.4%, 1/255), differentiated all 1a subtypes from 1b subtypes, and characterized all HCV 2-4 subtypes. This approach also distinguished two subtypes, 2j and 2q, that had rarely been detected previously in Spain. However, commercial procedures failed to subtype 12.7% (60/471) of samples and to genotype 0.6% of specimens (3/471). Nested PCR and sequencing of a NS5B region improved the subtyping of HCV in comparison with classical procedures and identified two rare subtypes in Spain: 2j and 2q. However, full length genome sequencing is recommended to confirm HCV 2j and 2q subtypes. Copyright © 2015. Published by Elsevier B.V.

CASS—CFEL-ASG software suite

NASA Astrophysics Data System (ADS)

Foucar, Lutz; Barty, Anton; Coppola, Nicola; Hartmann, Robert; Holl, Peter; Hoppe, Uwe; Kassemeyer, Stephan; Kimmel, Nils; Küpper, Jochen; Scholz, Mirko; Techert, Simone; White, Thomas A.; Strüder, Lothar; Ullrich, Joachim

2012-10-01

The Max Planck Advanced Study Group (ASG) at the Center for Free Electron Laser Science (CFEL) has created the CFEL-ASG Software Suite CASS to view, process and analyse multi-parameter experimental data acquired at Free Electron Lasers (FELs) using the CFEL-ASG Multi Purpose (CAMP) instrument Strüder et al. (2010) [6]. The software is based on a modular design so that it can be adjusted to accommodate the needs of all the various experiments that are conducted with the CAMP instrument. In fact, this allows the use of the software in all experiments where multiple detectors are involved. One of the key aspects of CASS is that it can be used either 'on-line', using a live data stream from the free-electron laser facility's data acquisition system to guide the experiment, and 'off-line', on data acquired from a previous experiment which has been saved to file. Program summary Program title: CASS Catalogue identifier: AEMP_v1_0 Program summary URL: http://cpc.cs.qub.ac.uk/summaries/AEMP_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: GNU General Public Licence, version 3 No. of lines in distributed program, including test data, etc.: 167073 No. of bytes in distributed program, including test data, etc.: 1065056 Distribution format: tar.gz Programming language: C++. Computer: Intel x86-64. Operating system: GNU/Linux (for information about restrictions see outlook). RAM: >8 GB Classification: 2.3, 3, 15, 16.4. External routines: Qt-Framework[1], SOAP[2], (optional HDF5[3], VIGRA[4], ROOT[5], QWT[6]) Nature of problem: Analysis and visualisation of scientific data acquired at Free-Electron-Lasers Solution method: Generalise data access and storage so that a variety of small programming pieces can be linked to form a complex analysis chain. Unusual features: Complex analysis chains can be built without recompiling the program Additional comments: An updated extensive documentation of CASS is available at [7]. Running time: Depending on the data size and complexity of analysis algorithms. References: [1] http://qt.nokia.com [2] http://www.cs.fsu.edu/~engelen/soap.html [3] http://www.hdfgroup.org/HDF5/ [4] http://hci.iwr.uni-heidelberg.de/vigra/ [5] http://root.cern.ch [6] http://qwt.sourceforge.net/ [7] http://www.mpi-hd.mpg.de/personalhomes/gitasg/cass

Physical properties, transmission and emission spectra of the WASP-19 planetary system from multi-colour photometry

NASA Astrophysics Data System (ADS)

Mancini, L.; Ciceri, S.; Chen, G.; Tregloan-Reed, J.; Fortney, J. J.; Southworth, J.; Tan, T. G.; Burgdorf, M.; Calchi Novati, S.; Dominik, M.; Fang, X.-S.; Finet, F.; Gerner, T.; Hardis, S.; Hinse, T. C.; Jørgensen, U. G.; Liebig, C.; Nikolov, N.; Ricci, D.; Schäfer, S.; Schönebeck, F.; Skottfelt, J.; Wertz, O.; Alsubai, K. A.; Bozza, V.; Browne, P.; Dodds, P.; Gu, S.-H.; Harpsøe, K.; Henning, Th.; Hundertmark, M.; Jessen-Hansen, J.; Kains, N.; Kerins, E.; Kjeldsen, H.; Lund, M. N.; Lundkvist, M.; Madhusudhan, N.; Mathiasen, M.; Penny, M. T.; Prof, S.; Rahvar, S.; Sahu, K.; Scarpetta, G.; Snodgrass, C.; Surdej, J.

2013-11-01

We present new ground-based, multi-colour, broad-band photometric measurements of the physical parameters, transmission and emission spectra of the transiting extrasolar planet WASP-19b. The measurements are based on observations of eight transits and four occultations through a Gunn i filter using the 1.54-m Danish Telescope, 14 transits through an Rc filter at the Perth Exoplanet Survey Telescope (PEST) observatory and one transit observed simultaneously through four optical (Sloan g', r', i', z') and three near-infrared (J, H, K) filters, using the Gamma Ray Burst Optical and Near-Infrared Detector (GROND) instrument on the MPG/ESO 2.2-m telescope. The GROND optical light curves have a point-to-point scatter around the best-fitting model between 0.52 and 0.65 mmag rms. We use these new data to measure refined physical parameters for the system. We find the planet to be more bloated (Rb = 1.410 ± 0.017RJup; Mb = 1.139 ± 0.030MJup) and the system to be twice as old as initially thought. We also used published and archived data sets to study the transit timings, which do not depart from a linear ephemeris. We detected an anomaly in the GROND transit light curve which is compatible with a spot on the photosphere of the parent star. The starspot position, size, spot contrast and temperature were established. Using our new and published measurements, we assembled the planet's transmission spectrum over the 370-2350 nm wavelength range and its emission spectrum over the 750-8000 nm range. By comparing these data to theoretical models we investigated the theoretically predicted variation of the apparent radius of WASP-19b as a function of wavelength and studied the composition and thermal structure of its atmosphere. We conclude that: (i) there is no evidence for strong optical absorbers at low pressure, supporting the common idea that the planet's atmosphere lacks a dayside inversion; (ii) the temperature of the planet is not homogenized, because the high warming of its dayside causes the planet to be more efficient in re-radiating than redistributing energy to the night side; (iii) the planet seems to be outside of any current classification scheme.

The CO-H2 van der Waals complex and complex organic molecules in cold molecular clouds: A TMC-1C survey

NASA Astrophysics Data System (ADS)

Potapov, A.; Sánchez-Monge, Á.; Schilke, P.; Graf, U. U.; Möller, Th.; Schlemmer, S.

2016-10-01

Context. Almost 200 different species have been detected in the interstellar medium (ISM) during the last decades, revealing not only simple species but complex molecules with more than six atoms. Other exotic compounds, like the weakly-bound dimer (H2)2, have also been detected in astronomical sources like Jupiter. Aims: We aim to detect, for the first time, the CO-H2 van der Waals complex in the ISM, which could be a sensitive indicator for low temperatures if detected. Methods: We used the IRAM 30 m telescope, located in Pico Veleta (Spain), to search for the CO-H2 complex in a cold, dense core in TMC-1C (with a temperature of ~10 K). All the brightest CO-H2 transitions in the 3 mm (80-110 GHz) band were observed with a spectral resolution of 0.5-0.7 km s-1, reaching a rms noise level of ~2 mK. The simultaneous observation of a broad frequency band, 16 GHz, allowed us to conduct a serendipitous spectral line survey. Results: We did not detected any lines belonging to the CO-H2 complex. We set up a new, more stringent upper limit for its abundance to be [CO-H2]/[CO] ~ 5 × 10-6, while we expect the abundance of the complex to be in the range ~10-8-10-3. The spectral line survey has allowed us to detect 75 lines associated with 41 different species (including isotopologues). We detect a number of complex organic species, for example methyl cyanide (CH3CN), methanol (CH3OH), propyne (CH3CCH), and ketene (CH2CO), associated with cold gas (excitation temperatures ~7 K), confirming the presence of these complex species not only in warm objects but also in cold regimes. Based on observations carried out with the IRAM 30 m Telescope. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain).Reduced spectra (FITS files) are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/594/A117

VizieR Online Data Catalog: Sloan i follow-up light curves of HATS-18 (Penev+, 2016)

NASA Astrophysics Data System (ADS)

Penev, K.; Hartman, J. D.; Bakos, G. A.; Ciceri, S.; Brahm, R.; Bayliss, D.; Bento, J.; Jordan, A.; Csubry, Z.; Bhatti, W.; de Val-Borro, M.; Espinoza, N.; Zhou, G.; Mancini, L.; Rabus, M.; Suc, V.; Henning, T.; Schmidt, B.; Noyes, R. W.; Lazar, J.; Papp, I.; Sari, P.

2017-02-01

The star HATS-18 was observed by HATSouth instruments between UT 2011 April 18 and UT 2013 July 21 using the HS-2, HS-4, and HS-6 units at the Las Campanas Observatory in Chile, the High Energy Spectroscopic Survey (H.E.S.S.) site in Namibia, and Siding Spring Observatory (SSO) in Australia, respectively. A total of 5372, 3758, and 4008 images of HATS-18 were obtained with HS-2, HS-4, and HS-6, respectively. The observations were obtained through a Sloan r filter with an exposure time of 240s. We obtained follow-up light curves of HATS-18 using the Las Cumbres Observatory Global Telescope (LCOGT) 1m telescope network. An ingress was observed on UT 2015 July 18 with the SBIG camera and a Sloan i filter on the 1m at the South African Astronomical Observatory (SAAO). A total of 33 images were collected at a median cadence of 201s. A full transit was observed on UT 2016 January 22 with the sinistro camera and a Sloan i filter on the 1m at Cerro Tololo Inter-American Observatory. A total of 61 images were collected at a median cadence of 219s. For the record, we also note that a full transit was observed on UT 2016 January 3 with the SBIG camera on the 1m at SAAO; however, due to tracking and weather problems, we were unable to extract high-precision photometry from these images, and therefore do not include these data in our analysis. The data are available in Table1. Spectroscopic follow-up observations of HATS-18 were carried out with WiFeS on the Australian National University (ANU) 2.3m telescope and with the Fiber-fed Extended Range Optical Spectrograph (FEROS) on the MPG 2.2m. A total of three spectra were obtained with WiFeS between UT 2015 February 28 and UT 2015 March 2, two at a resolution of R=Δλ/λ=7000, and one at R=3000. We obtained six R=48000 spectra with FEROS between UT 2015 June 12 and UT 2015 June 20. The data are provided in Table2. (2 data files).

SmartPill® as an objective parameter for determination of severity and duration of postoperative ileus: study protocol of a prospective, two-arm, open-label trial (the PIDuSA study).

PubMed

Vilz, Tim O; Pantelis, Dimitrios; Lingohr, Philipp; Fimmers, Rolf; Esmann, Anke; Randau, Thomas; Kalff, Jörg C; Coenen, Martin; Wehner, Sven

2016-07-08

Postoperative ileus (POI) is a frequent complication after abdominal surgery (AS). Until today, neither a prophylaxis nor an evidence-based therapy exists. This originates from the absence of objective parameters evaluating the severity and duration of POI resulting in clinical trials of modest quality. The SmartPill(®), a capsule which frequently measures pH value, temperature and intraluminal pressure after swallowing, offers an elegant option for analysing gastrointestinal (GI) transit times and smooth muscle activity in vivo. As the use in patients in the first months after AS is not covered by the marketing authorisation, we aim to investigate the safety and feasibility of the SmartPill(®) immediately after surgery. Additionally, we analyse the influence of prokinetics and laxatives as well as standardised physiotherapy on postoperative bowel contractility, as scientific evidence of its effects is still lacking. The PIDuSA study is a prospective, single-centre, two-arm, open-label trial. The SmartPill(®) will be applied to 55 patients undergoing AS having a high risk for POI and 10 patients undergoing extra-abdominal surgery rarely developing POI. The primary objective is the safety of the SmartPill(®) in patients after surgery on the basis of adverse device effects/serious adverse device effects (ADE/SADE). The sample size suggests that events with a probability of 3% could be seen with a certainty of 80% for at least once in the sample. Secondary objective is the analysis of postoperative intestinal activity in the GI tract in both groups. Furthermore, clinical signs of bowel motility disorders will be correlated to the data measured by the SmartPill(®) to evaluate its significance as an objective parameter for assessing POI severity. Additionally, effects of prokinetics, laxatives and physiotherapy on postoperative peristaltic activity recorded by the SmartPill(®) will be analysed. The protocol was approved by the federal authority (94.1.05-5660-8976) and the local ethics committee (092/14-MPG). Findings will be disseminated through publications and conference presentations. NCT02329912; Pre-results. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/

7th International Fermi Symposium

NASA Astrophysics Data System (ADS)

2017-10-01

The two Fermi instruments have been surveying the high-energy sky since August 2008. The Large Area Telescope (LAT) has discovered more than three thousand gamma-ray sources and many new source classes, bringing the importance of gamma-ray astrophysics to an ever-broadening community. The LAT catalog includes supernova remnants, pulsar wind nebulae, pulsars, binary systems, novae, several classes of active galaxies, starburst galaxies, normal galaxies, and a large number of unidentified sources. Continuous monitoring of the high-energy gamma-ray sky has uncovered numerous outbursts from a wide range of transients. Fermi LAT's study of diffuse gamma-ray emission in our Galaxy revealed giant bubbles, as well as an excess of gamma-rays from the Galactic center region, both observations have become exciting puzzles for the astrophysics community. The direct measurement of a harder-than- expected cosmic-ray electron spectrum may imply the presence of nearby cosmic-ray accelerators. LAT data have provided stringent constraints on new phenomena such as supersymmetric dark-matter annihilations as well as tests of fundamental physics. The full reprocessing of the entire mission dataset with Pass 8 includes improved event reconstruction, a wider energy range, better energy measurements, and significantly increased effective area, all them boosting the discovery potential and the ability to do precision observations with LAT. The Gamma-ray Burst Monitor (GBM) continues to be a prolific detector of gamma-ray transients: magnetars, solar flares, terrestrial gamma-ray flashes and gamma-ray bursts at keV to MeV energies, complementing the higher energy LAT observations of those sources in addition to providing valuable science return in their own right. All gamma-ray data are made immediately available at the Fermi Science Support Center (http://fermi.gsfc.nasa.gov/ssc). These publicly available data and Fermi analysis tools have enabled a large number of important studies. We especially encourage guest investigators worldwide to participate in this symposium to share results and to learn about upcoming opportunities. This meeting will focus on the new scientific investigations and results enabled by Fermi, the mission and instrument characteristics, future opportunities, coordinated observations and analysis techniques. In particular, we also encourage discussion of future prospects/science with Fermi in preparation for the upcoming NASA senior review. Details on the 7th International Fermi Symposium can be found here: https://events.mpe.mpg.de/Fermi2017

New observations and models of circumstellar CO line emission of AGB stars in the Herschel SUCCESS programme

NASA Astrophysics Data System (ADS)

Danilovich, T.; Teyssier, D.; Justtanont, K.; Olofsson, H.; Cerrigone, L.; Bujarrabal, V.; Alcolea, J.; Cernicharo, J.; Castro-Carrizo, A.; García-Lario, P.; Marston, A.

2015-09-01

Context. Asymptotic giant branch (AGB) stars are in one of the latest evolutionary stages of low to intermediate-mass stars. Their vigorous mass loss has a significant effect on the stellar evolution, and is a significant source of heavy elements and dust grains for the interstellar medium. The mass-loss rate can be well traced by carbon monoxide (CO) line emission. Aims: We present new Herschel/HIFI and IRAM 30 m telescope CO line data for a sample of 53 galactic AGB stars. The lines cover a fairly large range of excitation energy from the J = 1 → 0 line to the J = 9 → 8 line, and even the J = 14 → 13 line in a few cases. We perform radiative transfer modelling for 38 of these sources to estimate their mass-loss rates. Methods: We used a radiative transfer code based on the Monte Carlo method to model the CO line emission. We assume spherically symmetric circumstellar envelopes that are formed by a constant mass-loss rate through a smoothly accelerating wind. Results: We find models that are consistent across a broad range of CO lines for most of the stars in our sample, i.e., a large number of the circumstellar envelopes can be described with a constant mass-loss rate. We also find that an accelerating wind is required to fit, in particular, the higher-J lines and that a velocity law will have a significant effect on the model line intensities. The results cover a wide range of mass-loss rates (~10-8 to 2 × 10-5 M⊙ yr-1) and gas expansion velocities (2 to 21.5 km s-1) , and include M-, S-, and C-type AGB stars. Our results generally agree with those of earlier studies, although we tend to find slightly lower mass-loss rates by about 40%, on average. We also present "bonus" lines detected during our CO observations. Herschel is an ESA space observatory with science instruments provided by European-led Principal Investigator consortia and with important participation from NASA.Based on observations carried out with the IRAM 30 m Telescope. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain).Appendices are available in electronic form at http://www.aanda.org

Millimeter imaging of HD 163296: probing the disk structure and kinematics

NASA Astrophysics Data System (ADS)

Isella, A.; Testi, L.; Natta, A.; Neri, R.; Wilner, D.; Qi, C.

2007-07-01

We present new multi-wavelength millimeter interferometric observations of the Herbig Ae star HD 163296 obtained with the IRAM/PBI, SMA and VLA arrays both in continuum and in the 12CO, 13CO and C18O emission lines. Gas and dust properties have been obtained comparing the observations with self-consistent disk models for the dust and CO emission. The circumstellar disk is resolved both in the continuum and in CO. We find strong evidence that the circumstellar material is in Keplerian rotation around a central star of 2.6 M_⊙. The disk inclination with respect to the line of sight is 46° ± 4° with a position angle of 128° ± 4°. The slope of the dust opacity measured between 0.87 and 7 mm (β = 1) confirms the presence of mm/cm-size grains in the disk midplane. The dust continuum emission is asymmetric and confined inside a radius of 200 AU while the CO emission extends up to 540 AU. The comparison between dust and CO temperature indicates that CO is present only in the disk interior. Finally, we obtain an increasing depletion of CO isotopomers from 12CO to 13CO and C18O. We argue that these results support the idea that the disk of HD 163296 is strongly evolved. In particular, we suggest that there is a strong depletion of dust relative to gas outside 200 AU; this may be due to the inward migration of large bodies that form in the outer disk or to clearing of a large gap in the dust distribution by a low mass companion. Based on observations carried out with IRAM Plateau de Bure Interferometer, Submillimeter Array and NRAO Very Large Array. IRAM Plateau de Bure Interferometer is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain).The Submillimeter Array is a joint project between the Smithsonian Astrophysical Observatory and the Academia Sinica Institute of Astronomy and Astrophysics and is funded by the Smithsonian Institution and the Academia Sinica. The NRAO is a facility of the National Science Foundation operated under cooperative agreement by Associated Universities, Inc. Appendix A and Figs. [see full text]- [see full text] are only available in electronic form at http://www.aanda.org

Tracing the young massive high-eccentricity binary system θ^1Orionis C through periastron passage

NASA Astrophysics Data System (ADS)

Kraus, S.; Weigelt, G.; Balega, Y. Y.; Docobo, J. A.; Hofmann, K.-H.; Preibisch, T.; Schertl, D.; Tamazian, V. S.; Driebe, T.; Ohnaka, K.; Petrov, R.; Schöller, M.; Smith, M.

2009-04-01

Context: The nearby high-mass star binary system θ^1Ori C is the brightest and most massive of the Trapezium OB stars at the core of the Orion Nebula Cluster, and it represents a perfect laboratory to determine the fundamental parameters of young hot stars and to constrain the distance of the Orion Trapezium Cluster. Aims: By tracing the orbital motion of the θ^1Ori C components, we aim to refine the dynamical orbit of this important binary system. Methods: Between January 2007 and March 2008, we observed θ^1Ori C with VLTI/AMBER near-infrared (H- and K-band) long-baseline interferometry, as well as with bispectrum speckle interferometry with the ESO 3.6 m and the BTA 6 m telescopes (B'- and V'-band). Combining AMBER data taken with three different 3-telescope array configurations, we reconstructed the first VLTI/AMBER closure-phase aperture synthesis image, showing the θ^1Ori C system with a resolution of ˜ 2 mas. To extract the astrometric data from our spectrally dispersed AMBER data, we employed a new algorithm, which fits the wavelength-differential visibility and closure phase modulations along the H- and K-band and is insensitive to calibration errors induced, for instance, by changing atmospheric conditions. Results: Our new astrometric measurements show that the companion has nearly completed one orbital revolution since its discovery in 1997. The derived orbital elements imply a short-period (P ≈ 11.3 yr) and high-eccentricity orbit (e ≈ 0.6) with periastron passage around 2002.6. The new orbit is consistent with recently published radial velocity measurements, from which we can also derive the first direct constraints on the mass ratio of the binary components. We employ various methods to derive the system mass (M_system = 44 ± 7 M⊙) and the dynamical distance (d = 410 ± 20 pc), which is in remarkably good agreement with recently published trigonometric parallax measurements obtained with radio interferometry. Based on observations made with ESO telescopes at the La Silla Paranal Observatory under the OT and VISA-MPG GTO programme IDs 078.C-0360(A), 080.C-0541(A,B,C,D), 080.D-0225(B), and 080.C-0388(A).

Close Look at Hybrid Vehicle Loyalty and Ownership

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hwang, Ho-Ling; Chin, Shih-Miao; Wilson, Daniel W

In a news release dated April 9, 2012, Polk stated that only 35% of hybrid owners bought a hybrid again when they returned to market in 2011. These findings were based on an internal study conducted by Polk. The study also indicated that if repurchase behavior among the high volume audience of Toyota Prius owners wasn t factored in; hybrid loyalty would drop to under 25%. This news release has generated a lot of interest and concern by the automobile industry as well as consumers, since it was published, and caused many to think about the idea of hybrid loyaltymore » as well as factors that influence consumers. Most reactions to the 35% hybrid loyalty dealt with concerns of the viability of hybrid technology as part of the solution to address transportation energy challenges. This paper attempts to shed more light on Polk s hybrid loyalty study as well as explore several information sources concerning hybrid loyalty status. Specifically, major factors that might impact the selection and acquisition of hybrid vehicles are addressed. This includes investigating the associations between hybrid market shares and influencing factors like fuel price and hybrid incentives, as well as the availability of hybrid models and other highly fuel efficient vehicle options. This effort is not in-depth study, but rather a short study to see if Polk s claim could be validated. This study reveals that Polk s claim was rather misleading because its definition of loyalty was very narrow. This paper also suggests that Polk s analysis failed to account for some very important factors, raising the question of whether it is fair to compare a vehicle drive train option (which hybrids are) with a vehicle brand in terms of loyalty and also raises the question of whether hybrid loyalty is even a valid point to consider. This report maintains that Polk s study does not prove that hybrid owners were dissatisfied with their vehicles, which was a common theme among reporting news agencies when Polk initially released their findings. In this brief review, the team has looked at factors that might contribute to a consumer choosing to not purchase a hybrid; including the increase in manufacture s overall vehicle mpg and the percentage of the vehicle market owned by hybrids.« less

Probing highly obscured, self-absorbed galaxy nuclei with vibrationally excited HCN

NASA Astrophysics Data System (ADS)

Aalto, S.; Martín, S.; Costagliola, F.; González-Alfonso, E.; Muller, S.; Sakamoto, K.; Fuller, G. A.; García-Burillo, S.; van der Werf, P.; Neri, R.; Spaans, M.; Combes, F.; Viti, S.; Mühle, S.; Armus, L.; Evans, A.; Sturm, E.; Cernicharo, J.; Henkel, C.; Greve, T. R.

2015-12-01

We present high resolution (0.̋4) IRAM PdBI and ALMA mm and submm observations of the (ultra) luminous infrared galaxies ((U)LIRGs) IRAS 17208-0014, Arp220, IC 860 and Zw049.057 that reveal intense line emission from vibrationally excited (ν2 = 1) J = 3-2 and 4-3 HCN. The emission is emerging from buried, compact (r< 17-70 pc) nuclei that have very high implied mid-infrared surface brightness > 5 × 1013 L⊙ kpc-2. These nuclei are likely powered by accreting supermassive black holes (SMBHs) and/or hot (>200 K) extreme starbursts. Vibrational, ν2 = 1, lines of HCN are excited by intense 14 μm mid-infrared emission and are excellent probes of the dynamics, masses, and physical conditions of (U)LIRG nuclei when H2 column densities exceed 1024 cm-2. It is clear that these lines open up a new interesting avenue to gain access to the most obscured AGNs and starbursts. Vibrationally excited HCN acts as a proxy for the absorbed mid-infrared emission from the embedded nuclei, which allows for reconstruction of the intrinsic, hotter dust SED. In contrast, we show strong evidence that the ground vibrational state (ν = 0), J = 3-2and 4-3 rotational lines of HCN and HCO+ fail to probe the highly enshrouded, compact nuclear regions owing to strong self- and continuum absorption. The HCN and HCO+ line profiles are double-peaked because of the absorption and show evidence of non-circular motions - possibly in the form of in- or outflows. Detections of vibrationally excited HCN in external galaxies are so far limited to ULIRGs and early-type spiral LIRGs, and we discuss possible causes for this. We tentatively suggest that the peak of vibrationally excited HCN emission is connected to a rapid stage of nuclear growth, before the phase of strong feedback. Based on observations carried out with the IRAM Plateau de Bure and ALMA Interferometers. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain). ALMA is a partnership of ESO (representing its member states), NSF (USA), and NINS (Japan), together with NRC (Canada) and NSC and ASIAA (Taiwan), in cooperation with the Republic of Chile. The Joint ALMA Observatory is operated by ESO, AUI/NRAO, and NAOJ.

Portrait of a Dramatic Stellar Crib

NASA Astrophysics Data System (ADS)

2006-12-01

A new, stunning image of the cosmic spider, the Tarantula Nebula and its surroundings, finally pays tribute to this amazing, vast and intricately sculpted web of stars and gas. The newly released image, made with ESO's Wide Field Imager on the 2.2-m ESO/MPG Telescope at La Silla, covers 1 square degree on the sky and could therefore contain four times the full Moon. ESO PR Photo 50a/06 ESO PR Photo 50a/06 The Tarantula Nebula (WFI/2.2m) Known as the Tarantula Nebula for its spidery appearance, the 30 Doradus complex is a monstrous stellar factory. It is the largest emission nebula in the sky, and can be seen far down in the southern sky at a distance of about 170,000 light-years, in the southern constellation Dorado (The Swordfish or the Goldfish). It is part of one of the Milky Way's neighbouring galaxies, the Large Magellanic Cloud. The Tarantula Nebula is thought to contain more than half a million times the mass of the Sun in gas and this vast, blazing labyrinth hosts some of the most massive stars known. The nebula owes its name to the arrangement of its brightest patches of nebulosity, that somewhat resemble the legs of a spider. They extend from a central 'body' where a cluster of hot stars (designated 'R136') illuminates and shapes the nebula. This name, of the biggest spiders on the Earth, is also very fitting in view of the gigantic proportions of the celestial nebula - it measures nearly 1,000 light-years across and extends over more than one third of a degree: almost, but not quite, the size of the full Moon. If it were in our own Galaxy, at the distance of another stellar nursery, the Orion Nebula (1,500 light-years away), it would cover one quarter of the sky and even be visible in daylight. Because astronomers believe that most of the stars in the Universe were formed in large and hectic nurseries such as the 30 Doradus region, its study is fundamental. Early this year, astronomers took a new, wide look at the spider and its web of filaments, using the Wide Field Imager on the 2.2-m MPG/ESO telescope located at La Silla, Chile, while studying the dark clouds in the region. Dark clouds are enormous clouds of gas and dust, with a mass surpassing a million times that of the Sun. They are very cold, with temperatures about -260 degrees Celsius, and are difficult to study because of the heavy walls of dust behind which they hide. Their study is however essential, as it is in their freezing wombs that stars are born. ESO PR Photo 50b/06 ESO PR Photo 50b/06 SN 1987A and the Honeycomb Nebula (WFI/2.2m) Observing in four different bands, the astronomers made a mosaic of the half-degree field of view of the instrument to obtain an image covering one square degree. With each individual image containing 64 million pixels, the resultant mosaic thus contained 4 times as many, or 256 million pixels! The observations were made in very good image quality, the 'seeing' being typically below 1 arcsecond. The image is based on data collected through four filters, including two narrow-band filters that trace hydrogen (red) and oxygen (green). The predominance of green in the Tarantula is a result of the younger, hotter stars in this region of the complex. It would be easy to get lost in the meanderings of the filamentary structures or get stuck in the web of the giant arachnid, as is easily experienced with the zoom-in feature provided on the associated photo page, and it is therefore difficult to mention all the unique objects to be discovered. Deserving closer attention perhaps is the area at the right-hand border of the Tarantula. It contains the remains of a star that exploded and was seen with the unaided eye in February 1987, i.e. almost 20 years ago. Supernova SN 1987A, as it is known, is the brightest supernova since the one observed by the German astronomer Kepler in 1604. The supernova is known to be surrounded by a ring, which can be distinguished in the image. A little to the left of SN 1987A, another distinctive feature is apparent: the Honeycomb Nebula. This characteristic bubble-like structure results apparently from the interaction of a supernova explosion with an existing giant shell, which was itself generated by the combined action of strong winds from young, massive stars and supernova explosions. The image is based on observations carried out by João Alves (Calar Alto, Spain), Benoit Vandame and Yuri Bialetski (ESO) with the Wide Field Imager (WFI) at the 2.2-m telescope on La Silla. The colour composite was made by Bob Fosbury (ST-EcF). The reduced data used to make this image are released as Advanced Data Products (ADP) by the Virtual Observatory Systems Department of ESO. More detail on how to access the data are available from the 30 Doradus ADP page.

Young and Exotic Stellar Zoo

NASA Astrophysics Data System (ADS)

2005-03-01

Summary Super star clusters are groups of hundreds of thousands of very young stars packed into an unbelievably small volume. They represent the most extreme environments in which stars and planets can form. Until now, super star clusters were only known to exist very far away, mostly in pairs or groups of interacting galaxies. Now, however, a team of European astronomers [1] have used ESO's telescopes to uncover such a monster object within our own Galaxy, the Milky Way, almost, but not quite, in our own backyard! The newly found massive structure is hidden behind a large cloud of dust and gas and this is why it took so long to unveil its true nature. It is known as "Westerlund 1" and is a thousand times closer than any other super star cluster known so far. It is close enough that astronomers may now probe its structure in some detail. Westerlund 1 contains hundreds of very massive stars, some shining with a brilliance of almost one million suns and some two-thousand times larger than the Sun (as large as the orbit of Saturn)! Indeed, if the Sun were located at the heart of this remarkable cluster, our sky would be full of hundreds of stars as bright as the full Moon. Westerlund 1 is a most unique natural laboratory for the study of extreme stellar physics, helping astronomers to find out how the most massive stars in our Galaxy live and die. From their observations, the astronomers conclude that this extreme cluster most probably contains no less than 100,000 times the mass of the Sun, and all of its stars are located within a region less than 6 light-years across. Westerlund 1 thus appears to be the most massive compact young cluster yet identified in the Milky Way Galaxy. PR Photo 09a/05: The Super Star Cluster Westerlund 1 (2.2m MPG/ESO + WFI) PR Photo 09b/05: Properties of Young Massive Clusters Super Star Clusters Stars are generally born in small groups, mostly in so-called "open clusters" that typically contain a few hundred stars. From a wide range of observations, astronomers infer that the Sun itself was born in one such cluster, some 4,500 million years ago. In some active ("starburst") galaxies, scientists have observed violent episodes of star formation (see, for example, ESO Press Photo 31/04), leading to the development of super star clusters, each containing several million stars. Such events were obviously common during the Milky Way's childhood, more than 12,000 million years ago: the many galactic globular clusters - which are nearly as old as our Galaxy (e.g. ESO PR 20/04) - are indeed thought to be the remnants of early super star clusters. All super star clusters so far observed in starburst galaxies are very distant. It is not possible to distinguish their individual stars, even with the most advanced technology. This dramatically complicates their study and astronomers have therefore long been eager to find such clusters in our neighbourhood in order to probe their structure in much more detail. Now, a team of European astronomers [1] has finally succeeded in doing so, using several of ESO's telescopes at the La Silla observatory (Chile). Westerlund 1 ESO PR Photo 09a/05 ESO PR Photo 09a/05 The Super Star Cluster Westerlund 1 (2.2m MPG/ESO + WFI) [Preview - JPEG: 400 x 472 pix - 58k] [Normal - JPEG: 800 x 943 pix - 986k] [Full Res - JPEG: 1261 x 1486 pix - 2.4M] Caption: ESO PR Photo 09a/05 is a composite image of the super star cluster "Westerlund 1" from 2.2-m MPG/ESO Wide-Field Imager (WFI) observations. The image covers a 5 x 5 arcmin sky region and is based on observations made in the V-band (550 nm, 2 min exposure time, associated to the blue channel), R-band (650nm, 1 min, green channel) and I-band (784nm, 18 sec, red channel). Only the central CCD of WFI was used, as the entire cluster fits comfortably inside it. The foreground stars appear blue, while the hot massive members of the cluster look orange, and the cool massive ones come out red. The open cluster Westerlund 1 is located in the Southern constellation Ara (the Altar). It was discovered in 1961 from Australia by Swedish astronomer Bengt Westerlund, who later moved from there to become ESO Director in Chile (1970 - 74). This cluster is behind a huge interstellar cloud of gas and dust, which blocks most of its visible light. The dimming factor is more than 100,000 - and this is why it has taken so long to uncover the true nature of this particular cluster. In 2001, the team of astronomers identified more than a dozen extremely hot and peculiar massive stars in the cluster, so-called "Wolf-Rayet" stars. They have since studied Westerlund 1 extensively with various ESO telescopes. They used images from the Wide Field Imager (WFI) attached to the 2.2-m ESO/MPG as well as from the SUperb Seeing Imager 2 (SuSI2) camera on the ESO 3.5-m New Technology Telescope (NTT). From these observations, they were able to identify about 200 cluster member stars. To establish the true nature of these stars, the astronomers then performed spectroscopic observations of about one quarter of them. For this, they used the Boller & Chivens spectrograph on the ESO 1.52-m telescope and the ESO Multi-Mode Instrument (EMMI) on the NTT. An Exotic Zoo These observations have revealed a large population of very bright and massive, quite extreme stars. Some would fill the solar system space within the orbit of Saturn (about 2,000 times larger than the Sun!), others are as bright as a million Suns. Westerlund 1 is obviously a fantastic stellar zoo, with a most exotic population and a true astronomical bonanza. All stars identified are evolved and very massive, spanning the full range of stellar oddities from Wolf-Rayet stars, OB supergiants, Yellow Hypergiants (nearly as bright as a million Suns) and Luminous Blue Variables (similar to the exceptional Eta Carinae object - see ESO PR 31/03). All stars so far analysed in Westerlund 1 weigh at least 30-40 times more than the Sun. Because such stars have a rather short life - astronomically speaking - Westerlund 1 must be very young. The astronomers determine an age somewhere between 3.5 and 5 million years. So, Westerlund 1 is clearly a "newborn" cluster in our Galaxy! The Most Massive Cluster ESO PR Photo 09b/05 ESO PR Photo 09b/05 Properties of Young Massive Clusters [Preview - JPEG: 400 x 511 pix - 20k] [Normal - JPEG: 800 x 1021 pix - 122k] Caption: ESO PR Photo 09b/05 shows the properties of young massive clusters in our Galaxy and in the Large Magellanic Clouds, as well as of Super Star Clusters in star-forming galaxies. The diagram shows the mass and radius of these clusters and also the position of Westerlund 1 (indicated Wd 1). Westerlund 1 is incredibly rich in monster stars - just as one example, it contains as many Yellow Hypergiants as were hitherto known in the entire Milky Way! "If the Sun were located at the heart of Westerlund 1, the sky would be full of stars, many of them brighter than the full Moon", comments Ignacio Negueruela of the Universidad de Alicante in Spain and member of the team. The large quantity of very massive stars implies that Westerlund 1 must contain a huge number of stars. "In our Galaxy, explains Simon Clark of the University College London (UK) and one of the authors of this study, "there are more than 100 solar-like stars for every star weighing 10 times as much as the Sun. The fact that we see hundreds of massive stars in Westerlund 1 means that it probably contains close to half a million stars, but most of these are not bright enough to peer through the obscuring cloud of gas and dust". This is ten times more than any other known young clusterin the Milky Way. Westerlund 1 is presumably much more massive than the dense clusters of heavy stars present in the central region of our Galaxy, like the Arches and Quintuplet clusters. Further deep infrared observations will be required to confirm this. This super star cluster now provides astronomers with a unique perspective towards one of the most extreme environments in the Universe. Westerlund 1 will certainly provide new opportunities in the long-standing quest for more and finer details about how stars, and especially massive ones, do form. ... and the Most Dense The large number of stars in Westerlund 1 was not the only surprise awaiting Clark and his colleagues. From their observations, the team members also found that all these stars are packed into an amazingly small volume of space, indeed less than 6 light-years across. In fact, this is more or less comparable to the 4 light-year distance to the star nearest to the Sun, Proxima Centauri! It is incredible: the concentration in Westerlund 1 is so high that the mean separation between stars is quite similar to the extent of the Solar System. "With so many stars in such a small volume, some of them may collide", envisages Simon Clark. "This could lead to the formation of an intermediate-mass black hole more massive than 100 solar masses. It may well be that such a monster has already formed at the core of Westerlund 1." The huge population of massive stars in Westerlund 1 suggests that it will have a very significant impact on its surroundings. The cluster contains so many massive stars that in a time span of less than 40 million years, it will be the site of more than 1,500 supernovae. A gigantic firework that may drive a fountain of galactic material! Because Westerlund 1 is at a distance of only about 10,000 light-years, high-resolution cameras such as NAOS/CONICA on ESO's Very Large Telescope can resolve its individual stars. Such observations are now starting to reveal smaller stars in Westerlund 1, including some that are less massive than the Sun. Astronomers will thus soon be able to study this exotic galactic zoo in great depth. More information The research presented in this ESO Press Release will soon appear in the leading research journal Astronomy and Astrophysics ("On the massive stellar population of the Super Star Cluster Westerlund 1" by J.S. Clark and colleagues). The PDF file is available at the A&A web site. A second paper ("Further Wolf-Rayet stars in the starburst cluster Westerlund 1", by Ignacio Negueruela and Simon Clark) will also soon be published in Astronomy and Astrophysics. It is available as astro-ph/0503303. A Spanish press release issued by Universidad de Alicante is available on the web site of Ignacio Negueruela.

Screening and association testing of common coding variation in steroid hormone receptor co-activator and co-repressor genes in relation to breast cancer risk: the Multiethnic Cohort.

PubMed

Haiman, Christopher A; Garcia, Rachel R; Hsu, Chris; Xia, Lucy; Ha, Helen; Sheng, Xin; Le Marchand, Loic; Kolonel, Laurence N; Henderson, Brian E; Stallcup, Michael R; Greene, Geoffrey L; Press, Michael F

2009-01-30

Only a limited number of studies have performed comprehensive investigations of coding variation in relation to breast cancer risk. Given the established role of estrogens in breast cancer, we hypothesized that coding variation in steroid receptor coactivator and corepressor genes may alter inter-individual response to estrogen and serve as markers of breast cancer risk. We sequenced the coding exons of 17 genes (EP300, CCND1, NME1, NCOA1, NCOA2, NCOA3, SMARCA4, SMARCA2, CARM1, FOXA1, MPG, NCOR1, NCOR2, CALCOCO1, PRMT1, PPARBP and CREBBP) suggested to influence transcriptional activation by steroid hormone receptors in a multiethnic panel of women with advanced breast cancer (n = 95): African Americans, Latinos, Japanese, Native Hawaiians and European Americans. Association testing of validated coding variants was conducted in a breast cancer case-control study (1,612 invasive cases and 1,961 controls) nested in the Multiethnic Cohort. We used logistic regression to estimate odds ratios for allelic effects in ethnic-pooled analyses as well as in subgroups defined by disease stage and steroid hormone receptor status. We also investigated effect modification by established breast cancer risk factors that are associated with steroid hormone exposure. We identified 45 coding variants with frequencies > or = 1% in any one ethnic group (43 non-synonymous variants). We observed nominally significant positive associations with two coding variants in ethnic-pooled analyses (NCOR2: His52Arg, OR = 1.79; 95% CI, 1.05-3.05; CALCOCO1: Arg12His, OR = 2.29; 95% CI, 1.00-5.26). A small number of variants were associated with risk in disease subgroup analyses and we observed no strong evidence of effect modification by breast cancer risk factors. Based on the large number of statistical tests conducted in this study, the nominally significant associations that we observed may be due to chance, and will need to be confirmed in other studies. Our findings suggest that common coding variation in these candidate genes do not make a substantial contribution to breast cancer risk in the general population. Cataloging and testing of coding variants in coactivator and corepressor genes should continue and may serve as a valuable resource for investigations of other hormone-related phenotypes, such as inter-individual response to hormonal therapies used for cancer treatment and prevention.

Rotationally-supported disks around Class I sources in Taurus: disk formation constraints

NASA Astrophysics Data System (ADS)

Harsono, D.; Jørgensen, J. K.; van Dishoeck, E. F.; Hogerheijde, M. R.; Bruderer, S.; Persson, M. V.; Mottram, J. C.

2014-02-01

Context. Disks are observed around pre-main sequence stars, but how and when they form is still heavily debated. While disks around young stellar objects have been identified through thermal dust emission, spatially and spectrally resolved molecular line observations are needed to determine their nature. Only a handful of embedded rotationally supported disks have been identified to date. Aims: We identify and characterize rotationally supported disks near the end of the main accretion phase of low-mass protostars by comparing their gas and dust structures. Methods: Subarcsecond observations of dust and gas toward four Class I low-mass young stellar objects in Taurus are presented at significantly higher sensitivity than previous studies. The 13CO and C18O J = 2-1 transitions at 220 GHz were observed with the Plateau de Bure Interferometer at a spatial resolution of ≤0.8″ (56 AU radius at 140 pc) and analyzed using uv-space position velocity diagrams to determine the nature of their observed velocity gradient. Results: Rotationally supported disks (RSDs) are detected around 3 of the 4 Class I sources studied. The derived masses identify them as Stage I objects; i.e., their stellar mass is higher than their envelope and disk masses. The outer radii of the Keplerian disks toward our sample of Class I sources are ≤100 AU. The lack of on-source C18O emission for TMR1 puts an upper limit of 50 AU on its size. Flattened structures at radii >100 AU around these sources are dominated by infalling motion (υ ∝ r-1). A large-scale envelope model is required to estimate the basic parameters of the flattened structure from spatially resolved continuum data. Similarities and differences between the gas and dust disk are discussed. Combined with literature data, the sizes of the RSDs around Class I objects are best described with evolutionary models with an initial rotation of Ω = 10-14 Hz and slow sound speeds. Based on the comparison of gas and dust disk masses, little CO is frozen out within 100 AU in these disks. Conclusions: Rotationally supported disks with radii up to 100 AU are present around Class I embedded objects. Larger surveys of both Class 0 and I objects are needed to determine whether most disks form late or early in the embedded phase. Based on observations carried out with the IRAM Plateau de Bure Interferometer. IRAM is supported by INSU/CNBRS (France), MPG (Germany) and IGN (Spain).Appendices are available in electronic form at http://www.aanda.org

First detection of rotational CO line emission in a red giant branch star

NASA Astrophysics Data System (ADS)

Groenewegen, M. A. T.

2014-01-01

Context. For stars with initial masses below ~1 M⊙, the mass loss during the first red giant branch (RGB) phase dominates mass loss in the later asymptotic giant branch (AGB) phase. Nevertheless, mass loss on the RGB is still often parameterised by a simple Reimers law in stellar evolution models. Aims: To try to detect CO thermal emission in a small sample of nearby RGB stars with reliable Hipparcos parallaxes that were shown to have infrared excess in an earlier paper. Methods: A sample of five stars was observed in the CO J = 2-1 and J = 3-2 lines with the IRAM and APEX telescopes. Results: One star, the one with the largest mass-loss rate based on the previous analysis of the spectral energy distribution, was detected. The expansion velocity is unexpectedly large at 12 km s-1. The line profile and intensity are compared to the predictions from a molecular line emission code. The standard model predicts a double-peaked profile, while the observations indicate a flatter profile. A model that does fit the data has a much smaller CO envelope (by a factor of 3), and a CO abundance that is two times larger and/or a larger mass-loss rate than the standard model. This could indicate that the phase of large mass loss has only recently started. Conclusions: The detection of CO in an RGB star with a luminosity of only ~1300 L⊙ and a mass-loss rate as low as a few 10-9M⊙ yr-1 is important and the results also raise new questions. However, ALMA observations are required in order to study the mass-loss process of RGB stars in more detail, both for reasons of sensitivity (6 h of integration in superior weather at IRAM were needed to get a 4σ detection in the object with the largest detection probability), and spatial resolution (to determine the size of the CO envelope). Based on observations made with ESO telescopes at the La Silla Paranal Observatory under programme ID 091.D-0073 (ESO time) and 091.F-9322 (Swedish time). Based on observations with the Atacama Pathfinder EXperiment (APEX) telescope. APEX is a collaboration between the Max Planck Institute for Radio Astronomy, the European Southern Observatory, and the Onsala Space Observatory. Based on observations carried out with the IRAM 30 m Telescope under programme 183-11. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain).

Dissipative structures of diffuse molecular gas. III. Small-scale intermittency of intense velocity-shears

NASA Astrophysics Data System (ADS)

Hily-Blant, P.; Falgarone, E.; Pety, J.

2008-04-01

Aims: We further characterize the structures tentatively identified on thermal and chemical grounds as the sites of dissipation of turbulence in molecular clouds (Papers I and II). Methods: Our study is based on two-point statistics of line centroid velocities (CV), computed from three large 12CO maps of two fields. We build the probability density functions (PDF) of the CO line centroid velocity increments (CVI) over lags varying by an order of magnitude. Structure functions of the line CV are computed up to the 6th order. We compare these statistical properties in two translucent parsec-scale fields embedded in different large-scale environments, one far from virial balance and the other virialized. We also address their scale dependence in the former, more turbulent, field. Results: The statistical properties of the line CV bear the three signatures of intermittency in a turbulent velocity field: (1) the non-Gaussian tails in the CVI PDF grow as the lag decreases, (2) the departure from Kolmogorov scaling of the high-order structure functions is more pronounced in the more turbulent field, (3) the positions contributing to the CVI PDF tails delineate narrow filamentary structures (thickness ~0.02 pc), uncorrelated to dense gas structures and spatially coherent with thicker ones (~0.18 pc) observed on larger scales. We show that the largest CVI trace sharp variations of the extreme CO linewings and that they actually capture properties of the underlying velocity field, uncontaminated by density fluctuations. The confrontation with theoretical predictions leads us to identify these small-scale filamentary structures with extrema of velocity-shears. We estimate that viscous dissipation at the 0.02 pc-scale in these structures is up to 10 times higher than average, consistent with their being associated with gas warmer than the bulk. Last, their average direction is parallel (or close) to that of the local magnetic field projection. Conclusions: Turbulence in these translucent fields exhibits the statistical and structural signatures of small-scale and inertial-range intermittency. The more turbulent field on the 30 pc-scale is also the more intermittent on small scales. The small-scale intermittent structures coincide with those formerly identified as sites of enhanced dissipation. They are organized into parsec-scale coherent structures, coupling a broad range of scales. Based on observations carried out with the IRAM-30 m telescope. IRAM is supported by INSU-CNRS/MPG/IGN.

In-use activity, fuel use, and emissions of heavy-duty diesel roll-off refuse trucks.

PubMed

Sandhu, Gurdas S; Frey, H Christopher; Bartelt-Hunt, Shannon; Jones, Elizabeth

2015-03-01

The objectives of this study were to quantify real-world activity, fuel use, and emissions for heavy duty diesel roll-off refuse trucks; evaluate the contribution of duty cycles and emissions controls to variability in cycle average fuel use and emission rates; quantify the effect of vehicle weight on fuel use and emission rates; and compare empirical cycle average emission rates with the U.S. Environmental Protection Agency's MOVES emission factor model predictions. Measurements were made at 1 Hz on six trucks of model years 2005 to 2012, using onboard systems. The trucks traveled 870 miles, had an average speed of 16 mph, and collected 165 tons of trash. The average fuel economy was 4.4 mpg, which is approximately twice previously reported values for residential trash collection trucks. On average, 50% of time is spent idling and about 58% of emissions occur in urban areas. Newer trucks with selective catalytic reduction and diesel particulate filter had NOx and PM cycle average emission rates that were 80% lower and 95% lower, respectively, compared to older trucks without. On average, the combined can and trash weight was about 55% of chassis weight. The marginal effect of vehicle weight on fuel use and emissions is highest at low loads and decreases as load increases. Among 36 cycle average rates (6 trucks×6 cycles), MOVES-predicted values and estimates based on real-world data have similar relative trends. MOVES-predicted CO2 emissions are similar to those of the real world, while NOx and PM emissions are, on average, 43% lower and 300% higher, respectively. The real-world data presented here can be used to estimate benefits of replacing old trucks with new trucks. Further, the data can be used to improve emission inventories and model predictions. In-use measurements of the real-world activity, fuel use, and emissions of heavy-duty diesel roll-off refuse trucks can be used to improve the accuracy of predictive models, such as MOVES, and emissions inventories. Further, the activity data from this study can be used to generate more representative duty cycles for more accurate chassis dynamometer testing. Comparisons of old and new model year diesel trucks are useful in analyzing the effect of fleet turnover. The analysis of effect of haul weight on fuel use can be used by fleet managers to optimize operations to reduce fuel cost.

Pluto: improved astrometry from 19 years of observations

NASA Astrophysics Data System (ADS)

Benedetti-Rossi, G.; Vieira Martins, R.; Camargo, J. I. B.; Assafin, M.; Braga-Ribas, F.

2014-10-01

Context. We present astrometric positions of Pluto, consistent with the International Celestial Reference System, from 4412 CCD frames observed over 120 nights with three telescopes at the Observatório do Pico dos Dias in Brazil, covering a time span from 1995 to 2013, and also 145 frames observed over 11 nights in 2007 and 2009 with the ESO/MPG 2.2m telescope equipped with the Wide Field Imager (WFI). Aims: Our aim is to contribute to the study and improvement of the orbit of Pluto with new astrometric methods and positions. Methods: All astrometric positions of Pluto were reduced with the Platform for Reduction of Astronomical Images Automatically (PRAIA), using the USNO CCD Astrograph Catalogue 4 (UCAC4) as the reference catalog. We also used the planetary ephemeris DE421+plu021 for comparisons. The positions were corrected for differential chromatic refraction. The (x, y) center of Pluto was determined from corrections to the measured photocenter, which was contaminated by Charon. The corrections were obtained with an original procedure based on analytical expressions derived from a two-dimensional Gaussian function i.e. the point spread function PSF fitted to the images to derive the (x, y) measurements. Results: We obtained mean values of 4 mas and 37 mas for right ascension and declination, and standard deviations of σα = 45 mas and σδ = 49 mas, for the offsets in the sense observed minus ephemeris position, after the corrections. We confirm the presence of a linear drift in the ephemeris declinations from 2005 on, also obtained from stellar occultations. Conclusions: We present astrometric positions of Pluto for 19 years of observations in Brazil. The positions, corrected for differential chromatic refraction and Pluto/Charon photocenter effects, presented the same behavior as obtained from stellar occultations, with a drift in declinations of about 100 mas since 2005. The results indicate that the DE421 Pluto ephemeris used in this work need to be corrected. Full Table 4 is only available in electronic form at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/570/A86Based on observations made at Laboratório Nacional de Astrofísica (LNA), Itajubá-MG, Brazil.Partially based on observations through the ESO runs 079.A-9202(A), 075.C-0154, 077.C-0283, and 079.C-0345.

The radio spectral energy distribution of infrared-faint radio sources

NASA Astrophysics Data System (ADS)

Herzog, A.; Norris, R. P.; Middelberg, E.; Seymour, N.; Spitler, L. R.; Emonts, B. H. C.; Franzen, T. M. O.; Hunstead, R.; Intema, H. T.; Marvil, J.; Parker, Q. A.; Sirothia, S. K.; Hurley-Walker, N.; Bell, M.; Bernardi, G.; Bowman, J. D.; Briggs, F.; Cappallo, R. J.; Callingham, J. R.; Deshpande, A. A.; Dwarakanath, K. S.; For, B.-Q.; Greenhill, L. J.; Hancock, P.; Hazelton, B. J.; Hindson, L.; Johnston-Hollitt, M.; Kapińska, A. D.; Kaplan, D. L.; Lenc, E.; Lonsdale, C. J.; McKinley, B.; McWhirter, S. R.; Mitchell, D. A.; Morales, M. F.; Morgan, E.; Morgan, J.; Oberoi, D.; Offringa, A.; Ord, S. M.; Prabu, T.; Procopio, P.; Udaya Shankar, N.; Srivani, K. S.; Staveley-Smith, L.; Subrahmanyan, R.; Tingay, S. J.; Wayth, R. B.; Webster, R. L.; Williams, A.; Williams, C. L.; Wu, C.; Zheng, Q.; Bannister, K. W.; Chippendale, A. P.; Harvey-Smith, L.; Heywood, I.; Indermuehle, B.; Popping, A.; Sault, R. J.; Whiting, M. T.

2016-10-01

Context. Infrared-faint radio sources (IFRS) are a class of radio-loud (RL) active galactic nuclei (AGN) at high redshifts (z ≥ 1.7) that are characterised by their relative infrared faintness, resulting in enormous radio-to-infrared flux density ratios of up to several thousand. Aims: Because of their optical and infrared faintness, it is very challenging to study IFRS at these wavelengths. However, IFRS are relatively bright in the radio regime with 1.4 GHz flux densities of a few to a few tens of mJy. Therefore, the radio regime is the most promising wavelength regime in which to constrain their nature. We aim to test the hypothesis that IFRS are young AGN, particularly GHz peaked-spectrum (GPS) and compact steep-spectrum (CSS) sources that have a low frequency turnover. Methods: We use the rich radio data set available for the Australia Telescope Large Area Survey fields, covering the frequency range between 150 MHz and 34 GHz with up to 19 wavebands from different telescopes, and build radio spectral energy distributions (SEDs) for 34 IFRS. We then study the radio properties of this class of object with respect to turnover, spectral index, and behaviour towards higher frequencies. We also present the highest-frequency radio observations of an IFRS, observed with the Plateau de Bure Interferometer at 105 GHz, and model the multi-wavelength and radio-far-infrared SED of this source. Results: We find IFRS usually follow single power laws down to observed frequencies of around 150 MHz. Mostly, the radio SEDs are steep (α < -0.8; %), but we also find ultra-steep SEDs (α < -1.3; %). In particular, IFRS show statistically significantly steeper radio SEDs than the broader RL AGN population. Our analysis reveals that the fractions of GPS and CSS sources in the population of IFRS are consistent with the fractions in the broader RL AGN population. We find that at least % of IFRS contain young AGN, although the fraction might be significantly higher as suggested by the steep SEDs and the compact morphology of IFRS. The detailed multi-wavelength SED modelling of one IFRS shows that it is different from ordinary AGN, although it is consistent with a composite starburst-AGN model with a star formation rate of 170 M⊙ yr-1. Based on observations carried out with the IRAM Plateau de Bure Interferometer. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain).

First results from the CALYPSO IRAM-PdBI survey. II. Resolving the hot corino in the Class 0 protostar NGC 1333-IRAS2A

NASA Astrophysics Data System (ADS)

Maury, A. J.; Belloche, A.; André, Ph.; Maret, S.; Gueth, F.; Codella, C.; Cabrit, S.; Testi, L.; Bontemps, S.

2014-03-01

Aims: We investigate the origin of complex organic molecules (COMs) in the gas phase around the low-mass Class 0 protostar NGC 1333-IRAS2A, to determine if the COM emission lines trace an embedded disk, shocks from the protostellar jet, or the warm inner parts of the protostellar envelope. Methods: In the framework of the CALYPSO IRAM Plateau de Bure survey, we obtained large bandwidth spectra at sub-arcsecond resolution towards NGC 1333-IRAS2A. We identify the emission lines towards the central protostar and perform Gaussian fits to constrain the size of the emitting region for each of these lines, tracing various physical conditions and scales. Results: The emission of numerous COMs such as methanol, ethylene glycol, and methyl formate is spatially resolved by our observations. This allows us to measure, for the first time, the size of the COM emission inside the protostellar envelope, finding that it originates from a region of radius 40-100 AU, centered on the NGC 1333-IRAS2A protostellar object. Our analysis shows no preferential elongation of the COM emission along the jet axis, and therefore does not support the hypothesis that COM emission arises from shocked envelope material at the base of the jet. Down to similar sizes, the dust continuum emission is well reproduced with a single power-law envelope model, and therefore does not favor the hypothesis that COM emission arises from the thermal sublimation of grains embedded in a circumstellar disk. Finally, the typical scale ~60 AU observed for COM emission is consistent with the size of the inner envelope where Tdust > 100 K is expected. Our data therefore strongly suggest that the COM emission traces the hot corino in IRAS2A, i.e., the warm inner envelope material where the icy mantles of dust grains evaporate because they are passively heated by the central protostellar object. Based on observations carried out with the IRAM Plateau de Bure Interferometer. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain).CALYPSO stands for Continuum And Lines in Young ProtoStellar Objects.Appendix A, Tables 1, 2, and Figs. 3, 4 are available in electronic form at http://www.aanda.orgThe integrated emission maps shown in Fig. 3 are available in electronic form at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/563/L2

Abundance of SiC2 in carbon star envelopes

NASA Astrophysics Data System (ADS)

Massalkhi, S.; Agúndez, M.; Cernicharo, J.; Velilla Prieto, L.; Goicoechea, J. R.; Quintana-Lacaci, G.; Fonfría, J. P.; Alcolea, J.; Bujarrabal, V.

2018-03-01

Context. Silicon carbide dust is ubiquitous in circumstellar envelopes around C-rich asymptotic giant branch (AGB) stars. However, the main gas-phase precursors leading to the formation of SiC dust have not yet been identified. The most obvious candidates among the molecules containing an Si-C bond detected in C-rich AGB stars are SiC2, SiC, and Si2C. To date, the ring molecule SiC2 has been observed in a handful of evolved stars, while SiC and Si2C have only been detected in the C-star envelope IRC +10216. Aim. We aim to study how widespread and abundant SiC2, SiC, and Si2C are in envelopes around C-rich AGB stars, and whether or not these species play an active role as gas-phase precursors of silicon carbide dust in the ejecta of carbon stars. Methods: We carried out sensitive observations with the IRAM 30 m telescope of a sample of 25 C-rich AGB stars to search for emission lines of SiC2, SiC, and Si2C in the λ 2 mm band. We performed non-LTE excitation and radiative transfer calculations based on the LVG method to model the observed lines of SiC2 and to derive SiC2 fractional abundances in the observed envelopes. Results: We detect SiC2 in most of the sources, SiC in about half of them, and do not detect Si2C in any source except IRC +10216. Most of these detections are reported for the first time in this work. We find a positive correlation between the SiC and SiC2 line emission, which suggests that both species are chemically linked; the SiC radical is probably the photodissociation product of SiC2 in the external layer of the envelope. We find a clear trend where the denser the envelope, the less abundant SiC2 is. The observed trend is interpreted as evidence of efficient incorporation of SiC2 onto dust grains, a process that is favored at high densities owing to the higher rate at which collisions between particles take place. Conclusions: The observed behavior of a decline in the SiC2 abundance with increasing density strongly suggests that SiC2 is an important gas-phase precursor of SiC dust in envelopes around carbon stars. Based on observations carried out with the IRAM 30 m Telescope. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain).

Are genes associated with energy metabolism important in asthma and BMI?

PubMed

Szczepankiewicz, Aleksandra; Breborowicz, Anna; Sobkowiak, Paulina; Popiel, Anna

2009-02-01

Increased serum leptin levels have been observed in asthmatic patients. Leptin, via proliferation and activation of Th2 cells, may induce inflammation in asthma. It has also been demonstrated that leptin mRNA expression and protein levels increase in response to inflammatory stimuli. We hypothesized that polymorphisms in the leptin receptor, leptin and ghrelin genes, may affect their expression and, therefore, be responsible for altered response to increased leptin levels observed in asthma. To our knowledge, there were no studies on a potential role of LEPR, LEP, and GHRL polymorphisms in asthma. We analyzed 129 pediatric patients with asthma and 114 healthy children from the control group ranging from 6 to 18 years of age. The diagnosis of allergic asthma was based on clinical symptoms, the lung function test, and the positive skin prick test and/or increased immunoglobulin E (IgE) levels. Polymorphisms were genotyped by the polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method. Statistical analyses were performed with Statistica v.7.1 software (Statistica, StatSoft, Poland; available free at http://www.broad.mit.edu/mpg/haploview/index.php). Linkage disequilibrium analysis was performed with Haploview v.4.0. We observed a statistically significant association of the 3'UTR A/G and the -2549A/G polymorphisms of the leptin gene with asthma. No association with asthma was observed for the K109R and the Q223R polymorphisms of the LEPR gene and the Met72Leu polymorphism of the ghrelin gene. In the analysis of body mass index (BMI) stratified by genotype, we found an association of the -2549A/G LEP, but not of LEPR and GHRL polymorphisms, with higher BMI values in asthmatic patients. We found suggestive evidence for linkage between the two polymorphisms of the LEPR gene (D' = 0.84 CI: 0.71-0.92; r(2) = 0.29) in linkage disequilibrium analysis: The GG haplotype was more frequent in the control healthy group (p = 0.057). No linkage disequilibrium was detected between LEP polymorphisms. Polymorphisms of the leptin gene may be associated with asthma and higher BMI in asthmatic patients. Polymorphisms of the LEPR and GHRL seem unlikely to be associated with asthma or BMI in our sample. The results of haplotype analysis for the LEPR gene may suggest a protective role of the GG haplotype against asthma; however, studies on larger groups are necessary to confirm the observed trend towards association.

Jet multiplicity in the proto-binary system NGC 1333-IRAS4A. The detailed CALYPSO IRAM-PdBI view

NASA Astrophysics Data System (ADS)

Santangelo, G.; Codella, C.; Cabrit, S.; Maury, A. J.; Gueth, F.; Maret, S.; Lefloch, B.; Belloche, A.; André, Ph.; Hennebelle, P.; Anderl, S.; Podio, L.; Testi, L.

2015-12-01

Context. Owing to the paucity of sub-arcsecond (sub)mm observations required to probe the innermost regions of newly forming protostars, several fundamental questions are still being debated, such as the existence and coevality of close multiple systems. Aims: We study the physical and chemical properties of the jets and protostellar sources in the NGC 1333-IRAS4A proto-binary system using continuum emission and molecular tracers of shocked gas. Methods: We observed NGC 1333-IRAS4A in the SiO(6-5), SO(65-54), and CO(2-1) lines and the continuum emission at 1.3, 1.4, and 3 mm using the IRAM Plateau de Bure Interferometer in the framework of the CALYPSO large program. Results: We clearly disentangle for the first time the outflow emission from the two sources A1 and A2. The two protostellar jets have very different properties: the A1 jet is faster, has a short dynamical timescale (≲103 yr), and is associated with H2 shocked emission, whereas the A2 jet, which dominates the large-scale emission, is associated with diffuse emission, bends, and emits at slower velocities. The observed bending of the A2 jet is consistent with the change of propagation direction observed at large scale and suggests jet precession on very short timescales (~200-600 yr). In addition, a chemically rich spectrum with emission from several complex organic molecules (e.g. HCOOH, CH3OCHO, CH3OCH3) is only detected towards A2. Finally, very high-velocity shocked emission (~50 km s-1) is observed along the A1 jet. An LTE analysis shows that SiO, SO, and H2CO abundances in the gas phase are enhanced up to (3-4)×10-7, (1.4-1.7)×10-6, and (3-7.9)×10-7, respectively. Conclusions: The intrinsic different properties of the jets and driving sources in NGC 1333-IRAS4A suggest different evolutionary stages for the two protostars, with A1 being younger than A2, in a very early stage of star formation previous to the hot-corino phase. Based on observations carried out with the IRAM Plateau de Bure Interferometer. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain).Appendices are available in electronic form at http://www.aanda.org

EPA Remote Sensing Information Gateway

NASA Astrophysics Data System (ADS)

Paulsen, H. K.; Szykman, J. J.; Plessel, T.; Freeman, M.; Dimmick, F.

2009-12-01

The Remote Sensing Information Gateway was developed by the U.S. Environmental Protection Agency (EPA) to assist researchers in easily obtaining and combining a variety of environmental datasets related to air quality research. Current datasets available include, but are not limited to surface PM2.5 and O3 data, satellite derived aerosol optical depth , and 3-dimensional output from U.S. EPA's Models 3/Community Multi-scale Air Quality (CMAQ) modeling system. The presentation will include a demonstration that illustrates several scenarios of how researchers use the tool to help them visualize and obtain data for their work; with a particular focus on episode analysis related to biomass burning impacts on air quality. The presentation will provide an overview on how RSIG works and how the code has been—and can be—adapted for other projects. One example is the Virtual Estuary, which focuses on automating the retrieval and pre-processing of a variety of data needed for estuarine research. RSIG’s source codes are freely available to researchers with permission from the EPA principal investigator, Dr. Jim Szykman. RSIG is available to the community and can be accessed online at http://www.epa.gov/rsig. Once the JAVA policy file is configured on your computer you can run the RSIG applet on your computer and connect to the RSIG server to visualize and retrieve available data sets. The applet allows the user to specify the temporal/spatial areas of interest, and the types of data to retrieve. The applet then communicates with RSIG subsetter codes located on the data owners’ remote servers; the subsetter codes assemble and transfer via ordinary Internet protocols only the specified data to the researcher’s computer. This is much faster than the usual method of transferring large files via FTP and greatly reduces network traffic. The RSIG applet then visualizes the transferred data on a latitude-longitude map, automatically locating the data in the correct geographic position. Images, animations, and aggregated data can be saved or exported in a variety of data formats: Binary External Data Representation (XDR) format (simple, efficient), NetCDF-COARDS format, NetCDF-IOAPI format (regridding the data to a CMAQ grid), HDF (unsubsetted satellite files), ASCII tab-delimited spreadsheet, MCMC (used for input into HB model), PNG images, MPG movies, KMZ movies (for display in Google Earth and similar applications), GeoTIFF RGB format and 32-bit float format. RSIG’s source codes are freely available to researchers with permission from the EPA. Contacts for obtaining RSIG code are available at the RSIG website.

Millimeter wave spectra of carbonyl cyanide

NASA Astrophysics Data System (ADS)

Bteich, S. B.; Tercero, B.; Cernicharo, J.; Motiyenko, R. A.; Margulès, L.; Guillemin, J.-C.

2016-07-01

Context. More than 30 cyanide derivatives of simple organic molecules have been detected in the interstellar medium, but only one dicarbonitrile has been found and that very recently. There is still a lack of high-resolution spectroscopic data particularly for dinitriles derivatives. The carbonyl cyanide molecule is a new and interesting candidate for astrophysical detection. It could be formed by the reaction of CO and CN radicals, or by substitution of the hydrogen atom by a cyano group in cyanoformaldehyde, HC(=O)CN, that has already been detected in the interstellar medium. Aims: The available data on the rotational spectrum of carbonyl cyanide is limited in terms of quantum number values and frequency range, and does not allow accurate extrapolation of the spectrum into the millimeter-wave range. To provide a firm basis for astrophysical detection of carbonyl cyanide we studied its millimeter-wave spectrum. Methods: The rotational spectrum of carbonyl cyanide was measured in the frequency range 152-308 GHz and analyzed using Watson's A- and S-reduction Hamiltonians. Results: The ground and first excited state of v5 vibrational mode were assigned and analyzed. More than 1100 distinct frequency lines of the ground state were fitted to produce an accurate set of rotational and centrifugal distortion constants up to the eighth order. The frequency predictions based on these constants should be accurate enough for astrophysical searches in the frequency range up to 500 GHz and for transition involving energy levels with J ≤ 100 and Ka ≤ 42. Based on the results we searched for interstellar carbonyl cyanide in available observational data without success. Thus, we derived upper limits to its column density in different sources. This paper makes use of the following ALMA data: ADS/JAO.ALMA#2011.0.00009.SV. ALMA is a partnership of ESO (representing its member states), NSF (USA), and NINS (Japan) with NRC (Canada), NSC, and ASIAA (Taiwan), and KASI (Republic of Korea), in cooperation with the Republic of Chile. The Joint ALMA Observatory is operated by ESO, AUI/NRAO, and NAOJ. This work was also based on observations carried out with the IRAM 30-m telescope. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain).The full Tables 3 and 4 are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/592/A43

Laboratory measurements and astronomical search for the HSO radical

NASA Astrophysics Data System (ADS)

Cazzoli, Gabriele; Lattanzi, Valerio; Kirsch, Till; Gauss, Jürgen; Tercero, Belén; Cernicharo, José; Puzzarini, Cristina

2016-06-01

Context. Despite the fact that many sulfur-bearing molecules, ranging from simple diatomic species up to astronomical complex molecules, have been detected in the interstellar medium, the sulfur chemistry in space is largely unknown and a depletion in the abundance of S-containing species has been observed in the cold, dense interstellar medium. The chemical form of the missing sulfur has yet to be identified. Aims: For these reasons, in view of the fact that there is a large abundance of triatomic species harbouring sulfur, oxygen, and hydrogen, we decided to investigate the HSO radical in the laboratory to try its astronomical detection. Methods: High-resolution measurements of the rotational spectrum of the HSO radical were carried out within a frequency range well up into the THz region. Subsequently, a rigorous search for HSO in the two most studied high-mass star-forming regions, Orion KL and Sagittarius (Sgr) B2, and in the cold dark cloud Barnard 1 (B1-b) was performed. Results: The frequency coverage and the spectral resolution of our measurements allowed us to improve and extend the existing dataset of spectroscopic parameters, thus enabling accurate frequency predictions up to the THz range. These were used to derive the synthetic spectrum of HSO, by means of the MADEX code, according to the physical parameters of the astronomical source under consideration. For all sources investigated, the lack of HSO lines above the confusion limit of the data is evident. Conclusions: The derived upper limit to the abundance of HSO clearly indicates that this molecule does not achieve significant abundances in either the gas phase or in the ice mantles of dust grains. This paper makes use of the following ALMA data: ADS/JAO.ALMA#2011.0.00009.SV. ALMA is a partnership of ESO (representing its member states), NSF (USA), and NINS (Japan) with NRC (Canada), NSC, and ASIAA (Taiwan), and KASI (Republic of Korea), in cooperation with the Republic of Chile. The Joint ALMA Observatory is operated by ESO, AUI/NRAO, and NAOJ. This work is also based on observations carried out with the IRAM 30-m telescope. IRAM is supported by INSU/CNRS (France), MPG (Germany), and IGN (Spain)The laboratory spectroscopic measurements are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/591/A126

On the chemical ladder of esters. Detection and formation of ethyl formate in the W51 e2 hot molecular core

NASA Astrophysics Data System (ADS)

Rivilla, V. M.; Beltrán, M. T.; Martín-Pintado, J.; Fontani, F.; Caselli, P.; Cesaroni, R.

2017-03-01

Context. In recent years, the detection of organic molecules with increasing complexity and potential biological relevance is opening the possibility to understand the formation of the building blocks of life in the interstellar medium. One of the families of molecules of substantial astrobiological interest are the esters. The simplest ester, methyl formate (CH3OCHO), is rather abundant in star-forming regions. The next step in the chemical complexity of esters is ethyl formate, C2H5OCHO. Despite the increase in sensitivity of current telescopes, the detection of complex molecules with more than ten atoms such as C2H5OCHO is still a challenge. Only two detections of this species have been reported so far, which strongly limits our understanding of how complex molecules are formed in the interstellar medium. New detections towards additional sources with a wide range of physical conditions are crucial to differentiate between competing chemical models based on dust grain surface and gas-phase chemistry. Aims: We have searched for ethyl formate towards the W51 e2 hot molecular core, one of the most chemically rich sources in the Galaxy and one of the most promising regions to study prebiotic chemistry, especially after the recent discovery of the P-O bond, key in the formation of DNA. Methods: We have analyzed a spectral line survey towards the W51 e2 hot molecular core, which covers 44 GHz in the 1, 2 and 3 mm bands, carried out with the IRAM 30 m telescope. Results: We report the detection of the trans and gauche conformers of ethyl formate. A local thermodynamic equilibrium analysis indicates that the excitation temperature is 78 ± 10 K and that the two conformers have similar source-averaged column densities of (2.0 ± 0.3) × 10-16 cm-2 and an abundance of 10-8. We compare for the first time the observed molecular abundances of ethyl formate with different competing chemical models based on grain surface and gas-phase chemistry. Conclusions: We propose that grain-surface chemistry may have a dominant role in the formation of ethyl formate (and other complex organic molecules) in hot molecular cores, rather than reactions in the gas phase. Based on observations carried out with the IRAM 30 m Telescope. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain).

Accurate Atmospheric Parameters at Moderate Resolution Using Spectral Indices: Preliminary Application to the MARVELS Survey

NASA Astrophysics Data System (ADS)

Ghezzi, Luan; Dutra-Ferreira, Letícia; Lorenzo-Oliveira, Diego; Porto de Mello, Gustavo F.; Santiago, Basílio X.; De Lee, Nathan; Lee, Brian L.; da Costa, Luiz N.; Maia, Marcio A. G.; Ogando, Ricardo L. C.; Wisniewski, John P.; González Hernández, Jonay I.; Stassun, Keivan G.; Fleming, Scott W.; Schneider, Donald P.; Mahadevan, Suvrath; Cargile, Phillip; Ge, Jian; Pepper, Joshua; Wang, Ji; Paegert, Martin

2014-12-01

Studies of Galactic chemical, and dynamical evolution in the solar neighborhood depend on the availability of precise atmospheric parameters (effective temperature T eff, metallicity [Fe/H], and surface gravity log g) for solar-type stars. Many large-scale spectroscopic surveys operate at low to moderate spectral resolution for efficiency in observing large samples, which makes the stellar characterization difficult due to the high degree of blending of spectral features. Therefore, most surveys employ spectral synthesis, which is a powerful technique, but relies heavily on the completeness and accuracy of atomic line databases and can yield possibly correlated atmospheric parameters. In this work, we use an alternative method based on spectral indices to determine the atmospheric parameters of a sample of nearby FGK dwarfs and subgiants observed by the MARVELS survey at moderate resolving power (R ~ 12,000). To avoid a time-consuming manual analysis, we have developed three codes to automatically normalize the observed spectra, measure the equivalent widths of the indices, and, through a comparison of those with values calculated with predetermined calibrations, estimate the atmospheric parameters of the stars. The calibrations were derived using a sample of 309 stars with precise stellar parameters obtained from the analysis of high-resolution FEROS spectra, permitting the low-resolution equivalent widths to be directly related to the stellar parameters. A validation test of the method was conducted with a sample of 30 MARVELS targets that also have reliable atmospheric parameters derived from the high-resolution spectra and spectroscopic analysis based on the excitation and ionization equilibria method. Our approach was able to recover the parameters within 80 K for T eff, 0.05 dex for [Fe/H], and 0.15 dex for log g, values that are lower than or equal to the typical external uncertainties found between different high-resolution analyses. An additional test was performed with a subsample of 138 stars from the ELODIE stellar library, and the literature atmospheric parameters were recovered within 125 K for T eff, 0.10 dex for [Fe/H], and 0.29 dex for log g. These precisions are consistent with or better than those provided by the pipelines of surveys operating with similar resolutions. These results show that the spectral indices are a competitive tool to characterize stars with intermediate resolution spectra. Based on observations obtained with the 2.2 m MPG telescope at the European Southern Observatory (La Silla, Chile), under the agreement ESO-Observatório Nacional/MCT, and the Sloan Digital Sky Survey, which is owned and operated by the Astrophysical Research Consortium.

Growth of carbon chains in IRC +10216 mapped with ALMA

NASA Astrophysics Data System (ADS)

Agúndez, M.; Cernicharo, J.; Quintana-Lacaci, G.; Castro-Carrizo, A.; Velilla Prieto, L.; Marcelino, N.; Guélin, M.; Joblin, C.; Martín-Gago, J. A.; Gottlieb, C. A.; Patel, N. A.; McCarthy, M. C.

2017-05-01

Linear carbon chains are common in various types of astronomical molecular sources. Possible formation mechanisms involve both bottom-up and top-down routes. We have carried out a combined observational and modeling study of the formation of carbon chains in the C-star envelope IRC +10216, where the polymerization of acetylene and hydrogen cyanide induced by ultraviolet photons can drive the formation of linear carbon chains of increasing length. We have used ALMA to map the emission of λ 3 mm rotational lines of the hydrocarbon radicals C2H, C4H, and C6H, and the CN-containing species CN, C3N, HC3N, and HC5N with an angular resolution of 1''. The spatial distribution of all these species is a hollow 5-10'' wide spherical shell located at a radius of 10-20'' from the star, with no appreciable emission close to the star. Our observations resolve the broad shell of carbon chains into thinner subshells that are 1-2'' wide and not fully concentric, indicating that the mass-loss process has been discontinuous and not fully isotropic. The radial distributions of the species mapped reveal subtle differences: while the hydrocarbon radicals have very similar radial distributions, the CN-containing species show more diverse distributions, with HC3N appearing earlier in the expansion and the radical CN extending later than the rest of the species. The observed morphology can be rationalized by a chemical model in which the growth of polyynes is mainly produced by rapid gas-phase chemical reactions of C2H and C4H radicals with unsaturated hydrocarbons, while cyanopolyynes are mainly formed from polyynes in gas-phase reactions with CN and C3N radicals. Based on observations carried out with ALMA and the IRAM 30 m Telescope. ALMA is a partnership of ESO (representing its member states), NSF (USA) and NINS (Japan), together with NRC (Canada) and NSC and ASIAA (Taiwan), in cooperation with the Republic of Chile. The Joint ALMA Observatory is operated by ESO, AUI/NRAO and NAOJ. IRAM is supported by INSU/CNRS (France), MPG (Germany) and IGN (Spain). This paper makes use of the following ALMA data: ADS/JAO.ALMA#2013.1.00432.S.Data cube (FITS file) is available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/601/A4

Opening up a Colourful Cosmic Jewel Box

NASA Astrophysics Data System (ADS)

2009-10-01

The combination of images taken by three exceptional telescopes, the ESO Very Large Telescope on Cerro Paranal , the MPG/ESO 2.2-metre telescope at ESO's La Silla observatory and the NASA/ESA Hubble Space Telescope, has allowed the stunning Jewel Box star cluster to be seen in a whole new light. Star clusters are among the most visually alluring and astrophysically fascinating objects in the sky. One of the most spectacular nestles deep in the southern skies near the Southern Cross in the constellation of Crux. The Kappa Crucis Cluster, also known as NGC 4755 or simply the "Jewel Box" is just bright enough to be seen with the unaided eye. It was given its nickname by the English astronomer John Herschel in the 1830s because the striking colour contrasts of its pale blue and orange stars seen through a telescope reminded Herschel of a piece of exotic jewellery. Open clusters [1] such as NGC 4755 typically contain anything from a few to thousands of stars that are loosely bound together by gravity. Because the stars all formed together from the same cloud of gas and dust their ages and chemical makeup are similar, which makes them ideal laboratories for studying how stars evolve. The position of the cluster amongst the rich star fields and dust clouds of the southern Milky Way is shown in the very wide field view generated from the Digitized Sky Survey 2 data. This image also includes one of the stars of the Southern Cross as well as part of the huge dark cloud of the Coal Sack [2]. A new image taken with the Wide Field Imager (WFI) on the MPG/ESO 2.2-metre telescope at ESO's La Silla Observatory in Chile shows the cluster and its rich surroundings in all their multicoloured glory. The large field of view of the WFI shows a vast number of stars. Many are located behind the dusty clouds of the Milky Way and therefore appear red [3]. The FORS1 instrument on the ESO Very Large Telescope (VLT) allows a much closer look at the cluster itself. The telescope's huge mirror and exquisite image quality have resulted in a brand-new, very sharp view despite a total exposure time of just 5 seconds. This new image is one of the best ever taken of this cluster from the ground. The Jewel Box may be visually colourful in images taken on Earth, but observing from space allows the NASA/ESA Hubble Space Telescope to capture light of shorter wavelengths than can not be seen by telescopes on the ground. This new Hubble image of the core of the cluster represents the first comprehensive far ultraviolet to near-infrared image of an open galactic cluster. It was created from images taken through seven filters, allowing viewers to see details never seen before. It was taken near the end of the long life of the Wide Field Planetary Camera 2 ― Hubble's workhorse camera up until the recent Servicing Mission, when it was removed and brought back to Earth. Several very bright, pale blue supergiant stars, a solitary ruby-red supergiant and a variety of other brilliantly coloured stars are visible in the Hubble image, as well as many much fainter ones. The intriguing colours of many of the stars result from their differing intensities at different ultraviolet wavelengths. The huge variety in brightness of the stars in the cluster exists because the brighter stars are 15 to 20 times the mass of the Sun, while the dimmest stars in the Hubble image are less than half the mass of the Sun. More massive stars shine much more brilliantly. They also age faster and make the transition to giant stars much more quickly than their faint, less-massive siblings. The Jewel Box cluster is about 6400 light-years away and is approximately 16 million years old. Notes [1] Open, or galactic, star clusters are not to be confused with globular clusters ― huge balls of tens of thousands of ancient stars in orbit around our galaxy and others. It seems that most stars, including our Sun, formed in open clusters. [2] The Coal Sack is a dark nebula in the Southern Hemisphere, near the Southern Cross, that can be seen with the unaided eye. A dark nebula is not the complete absence of light, but an interstellar cloud of thick dust that obscures most background light in the visible. [3] If the light from a distant star passes through dust clouds in space the blue light is scattered and absorbed more than the red. As a result the starlight looks redder when it arrives on Earth. The same effect creates the glorious red colours of terrestrial sunsets. More information ESO, the European Southern Observatory, is the foremost intergovernmental astronomy organisation in Europe and the world's most productive astronomical observatory. It is supported by 14 countries: Austria, Belgium, the Czech Republic, Denmark, France, Finland, Germany, Italy, the Netherlands, Portugal, Spain, Sweden, Switzerland and the United Kingdom. ESO carries out an ambitious programme focused on the design, construction and operation of powerful ground-based observing facilities enabling astronomers to make important scientific discoveries. ESO also plays a leading role in promoting and organising cooperation in astronomical research. ESO operates three unique world-class observing sites in Chile: La Silla, Paranal and Chajnantor. At Paranal, ESO operates the Very Large Telescope, the world's most advanced visible-light astronomical observatory. ESO is the European partner of a revolutionary astronomical telescope ALMA, the largest astronomical project in existence. ESO is currently planning a 42-metre European Extremely Large optical/near-infrared Telescope, the E-ELT, which will become "the world's biggest eye on the sky". The Hubble Space Telescope is a project of international cooperation between ESA and NASA.

The Trilogy is Complete - GigaGalaxy Zoom Phase 3

NASA Astrophysics Data System (ADS)

2009-09-01

The third image of ESO's GigaGalaxy Zoom project has just been released online, completing this eye-opening dive into our galactic home in outstanding fashion. The latest image follows on from views, released over the last two weeks, of the sky as seen with the unaided eye and through an amateur telescope. This third instalment provides another breathtaking vista of an astronomical object, this time a 370-million-pixel view of the Lagoon Nebula of the quality and depth needed by professional astronomers in their quest to understand our Universe. The newly released image extends across a field of view of more than one and a half square degree - an area eight times larger than that of the full Moon - and was obtained with the Wide Field Imager attached to the MPG/ESO 2.2-metre telescope at the La Silla Observatory in Chile. This 67-million-pixel camera has already created several of ESO's iconic pictures. The intriguing object depicted here - the Lagoon Nebula - is located four to five thousand light-years away towards the constellation of Sagittarius (the Archer). The nebula is a giant interstellar cloud, 100 light-years across, where stars are forming. The scattered dark patches seen all over the nebula are huge clouds of gas and dust that are collapsing under their own weight and which will soon give birth to clusters of young, glowing stars. Some of the smallest clouds are known as "globules" and the most prominent ones have been catalogued by the astronomer Edward Emerson Barnard. The Lagoon Nebula hosts the young open stellar cluster known as NGC 6530. This is home for 50 to 100 stars and twinkles in the lower left portion of the nebula. Observations suggest that the cluster is slightly in front of the nebula itself, though still enshrouded by dust, as revealed by reddening of the starlight, an effect that occurs when small dust particles scatter light. The name of the Lagoon Nebula derives from the wide lagoon-shaped dark lane located in the middle of the nebula that divides it into two glowing sections. This gorgeous starscape is the last in the series of three huge images featured in the GigaGalaxy Zoom project, launched by ESO as part of the International Year of Astronomy 2009 (IYA2009). Through three giant images, the GigaGalaxy Zoom project reveals the full sky as it appears with the unaided eye from one of the darkest deserts on Earth, then zooms in on a rich region of the Milky Way using an amateur telescope, and finally uses the power of a professional telescope to reveal the details of a famous nebula. In this way, the project links the sky we can all see with the deep, "hidden" cosmos that astronomers study on a daily basis. The wonderful quality of the images is a testament to the splendour of the night sky at ESO's sites in Chile, which are the most productive astronomical observatories in the world. "The GigaGalaxy Zoom project's dedicated website has proved very successful, drawing hundreds of thousands of visitors from all around the world," says project coordinator Henri Boffin. "With the trilogy now complete, viewers will be able to explore a magnificently detailed cosmic environment on many different scales and take a breathtaking dive into our Milky Way." More information As part of the IYA2009, ESO is participating in several remarkable outreach activities, in line with its world-leading rank in the field of astronomy. ESO is hosting the IYA2009 Secretariat for the International Astronomical Union, which coordinates the Year globally. ESO is one of the Organisational Associates of IYA2009, and was also closely involved in the resolution submitted to the United Nations (UN) by Italy, which led to the UN's 62nd General Assembly proclaiming 2009 the International Year of Astronomy. In addition to a wide array of activities planned both at the local and international level, ESO is leading four of the thirteen global Cornerstone Projects. ESO, the European Southern Observatory, is the foremost intergovernmental astronomy organisation in Europe and the world's most productive astronomical observatory. It is supported by 14 countries: Austria, Belgium, the Czech Republic, Denmark, France, Finland, Germany, Italy, the Netherlands, Portugal, Spain, Sweden, Switzerland and the United Kingdom. ESO carries out an ambitious programme focused on the design, construction and operation of powerful ground-based observing facilities enabling astronomers to make important scientific discoveries. ESO also plays a leading role in promoting and organising cooperation in astronomical research. ESO operates three unique world-class observing sites in Chile: La Silla, Paranal and Chajnantor. At Paranal, ESO operates the Very Large Telescope, the world's most advanced visible-light astronomical observatory. ESO is the European partner of a revolutionary astronomical telescope ALMA, the largest astronomical project in existence. ESO is currently planning a 42-metre European Extremely Large optical/near-infrared Telescope, the E-ELT, which will become "the world's biggest eye on the sky". The third image of the GigaGalaxy Zoom project was taken with the Wide Field Imager (WFI) attached to the MPG/ESO 2.2-metre telescope at the ESO La Silla Observatory. In order to optimise telescope time, the images were obtained by ESO staff astronomers, who select the most favourable observations to be made at any given time, taking into account the visibility of the objects and the sky conditions. The La Silla Observatory, 600 km north of Santiago de Chile and at an altitude of 2400 metres, has been an ESO stronghold since the 1960s. Here, ESO operates several of the most productive 2-4-metre-class telescopes in the world.

The complexity of South China Sea kinematics

NASA Astrophysics Data System (ADS)

Sibuet, Jean-Claude; Gao, Jinyao; Zhao, Minghui; Wu, Jonny; Ding, Weiwei; Yeh, Yi-Ching; Lee, Chao-Shing

2016-04-01

Magnetic modeling shows that the age of the youngest South China Sea (SCS) oceanic crust is controversial (e.g. 15.5 Ma, Briais et al., JGR 1993 and 20.5 Ma, Barckhausen et al., MPG 2014). Close to the rift axis of the East sub-basin, Ar-Ar age dating of oceanic crustal rocks collected during IODP Leg 349 gives ages of 15 and 15.2 +/- 0.2 Ma (Koppers, Fall AGU meeting, 2014), which seems to favor the 15.5 Ma age given by Briais et al. modeling. However, basaltic samples might belong to a sill and not to the typical oceanic crust. As post-spreading magmatic activity (~8-13 Ma) largely masks the spreading fabric, in particular near the previously identified E-W portion of the extinct ridge axis of the East sub-basin, the published locations of the axial magnetic anomaly and spreading rates are incorrect. The compilation of available swath bathymetric data shows that if post-spreading volcanics hide the seafloor spreading magnetic fabric mostly along and near the extinct spreading axis, the whole SCS is globally characterized by rift directions following three directions: N055°in the youngest portion of the SCS, N065° and N085° in the oldest portions of the SCS (Sibuet et al., Tectonophysics 2016) suggesting the extinct ridge axis is N055° trending instead of E-W. We present an updated version of the whole SCS structural sketch based on previously published swath bathymetric trends and new detailed magnetic lineations trends compiled from an extremely dense set of magnetic data. The new structural sketch shows: - The distribution of conjugate kinematic domains, - The early opening of the NW and East sub-basins, before a jump of the rift axis, - A second ridge jump in the East basin, - The different expressions of the post-spreading magmatism in the East and SW sub-basins. In the East sub-basin, crustal magmatic intrusions led to the formation of extrusive basalts associated with the presence of numerous volcanoes (Wang et al., Geological Journal 2016). In the SW sub-basin, crustal magmatic intrusions deformed and uplifted the already formed oceanic crust and oldest overlying sediments, resulting in the formation of a double post-spreading ridge belt previously identified as the shoulders of the extinct spreading rift axis. Later on, this preliminary work will be used to identify magnetic lineations not polluted by the post-spreading magmatism. The unfolded Manila trench and proto-SCS slabs from seismic tomography indicate that the Eurasian margin has been maximum ~500 km east of the Manila trench since the proto-SCS era, and we incorporate these restored slabs to show a more complete SCS kinematic history.

(Sub)millimetre interferometric imaging of a sample of COSMOS/AzTEC submillimetre galaxies. I. Multiwavelength identifications and redshift distribution

NASA Astrophysics Data System (ADS)

Miettinen, O.; Smolčić, V.; Novak, M.; Aravena, M.; Karim, A.; Masters, D.; Riechers, D. A.; Bussmann, R. S.; McCracken, H. J.; Ilbert, O.; Bertoldi, F.; Capak, P.; Feruglio, C.; Halliday, C.; Kartaltepe, J. S.; Navarrete, F.; Salvato, M.; Sanders, D.; Schinnerer, E.; Sheth, K.

2015-05-01

We used the Plateau de Bure Interferometer (PdBI) to map a sample of 15 submillimetre galaxies (SMGs) in the COSMOS field at the wavelength of 1.3 mm. The target SMGs were originally discovered in the James Clerk Maxwell Telescope (JCMT)/AzTEC 1.1 mm continuum survey at S/N1.1 mm = 4-4.5. This paper presents, for the first time, interferometric millimetre-wavelength observations of these sources. The angular resolution of our observations, 1''&dotbelow;8, allowed us to accurately determine the positions of the target SMGs. Using a detection threshold of S/N1.3 mm> 4.5 regardless of multiwavelength counterpart association, and 4