Hierarchical Object-based Image Analysis approach for classification of sub-meter multispectral imagery in Tanzania

NASA Astrophysics Data System (ADS)

Chung, C.; Nagol, J. R.; Tao, X.; Anand, A.; Dempewolf, J.

2015-12-01

Increasing agricultural production while at the same time preserving the environment has become a challenging task. There is a need for new approaches for use of multi-scale and multi-source remote sensing data as well as ground based measurements for mapping and monitoring crop and ecosystem state to support decision making by governmental and non-governmental organizations for sustainable agricultural development. High resolution sub-meter imagery plays an important role in such an integrative framework of landscape monitoring. It helps link the ground based data to more easily available coarser resolution data, facilitating calibration and validation of derived remote sensing products. Here we present a hierarchical Object Based Image Analysis (OBIA) approach to classify sub-meter imagery. The primary reason for choosing OBIA is to accommodate pixel sizes smaller than the object or class of interest. Especially in non-homogeneous savannah regions of Tanzania, this is an important concern and the traditional pixel based spectral signature approach often fails. Ortho-rectified, calibrated, pan sharpened 0.5 meter resolution data acquired from DigitalGlobe's WorldView-2 satellite sensor was used for this purpose. Multi-scale hierarchical segmentation was performed using multi-resolution segmentation approach to facilitate the use of texture, neighborhood context, and the relationship between super and sub objects for training and classification. eCognition, a commonly used OBIA software program, was used for this purpose. Both decision tree and random forest approaches for classification were tested. The Kappa index agreement for both algorithms surpassed the 85%. The results demonstrate that using hierarchical OBIA can effectively and accurately discriminate classes at even LCCS-3 legend.

Multi-Feature Classification of Multi-Sensor Satellite Imagery Based on Dual-Polarimetric Sentinel-1A, Landsat-8 OLI, and Hyperion Images for Urban Land-Cover Classification.

PubMed

Zhou, Tao; Li, Zhaofu; Pan, Jianjun

2018-01-27

This paper focuses on evaluating the ability and contribution of using backscatter intensity, texture, coherence, and color features extracted from Sentinel-1A data for urban land cover classification and comparing different multi-sensor land cover mapping methods to improve classification accuracy. Both Landsat-8 OLI and Hyperion images were also acquired, in combination with Sentinel-1A data, to explore the potential of different multi-sensor urban land cover mapping methods to improve classification accuracy. The classification was performed using a random forest (RF) method. The results showed that the optimal window size of the combination of all texture features was 9 × 9, and the optimal window size was different for each individual texture feature. For the four different feature types, the texture features contributed the most to the classification, followed by the coherence and backscatter intensity features; and the color features had the least impact on the urban land cover classification. Satisfactory classification results can be obtained using only the combination of texture and coherence features, with an overall accuracy up to 91.55% and a kappa coefficient up to 0.8935, respectively. Among all combinations of Sentinel-1A-derived features, the combination of the four features had the best classification result. Multi-sensor urban land cover mapping obtained higher classification accuracy. The combination of Sentinel-1A and Hyperion data achieved higher classification accuracy compared to the combination of Sentinel-1A and Landsat-8 OLI images, with an overall accuracy of up to 99.12% and a kappa coefficient up to 0.9889. When Sentinel-1A data was added to Hyperion images, the overall accuracy and kappa coefficient were increased by 4.01% and 0.0519, respectively.

Automatic classification and detection of clinically relevant images for diabetic retinopathy

NASA Astrophysics Data System (ADS)

Xu, Xinyu; Li, Baoxin

2008-03-01

We proposed a novel approach to automatic classification of Diabetic Retinopathy (DR) images and retrieval of clinically-relevant DR images from a database. Given a query image, our approach first classifies the image into one of the three categories: microaneurysm (MA), neovascularization (NV) and normal, and then it retrieves DR images that are clinically-relevant to the query image from an archival image database. In the classification stage, the query DR images are classified by the Multi-class Multiple-Instance Learning (McMIL) approach, where images are viewed as bags, each of which contains a number of instances corresponding to non-overlapping blocks, and each block is characterized by low-level features including color, texture, histogram of edge directions, and shape. McMIL first learns a collection of instance prototypes for each class that maximizes the Diverse Density function using Expectation- Maximization algorithm. A nonlinear mapping is then defined using the instance prototypes and maps every bag to a point in a new multi-class bag feature space. Finally a multi-class Support Vector Machine is trained in the multi-class bag feature space. In the retrieval stage, we retrieve images from the archival database who bear the same label with the query image, and who are the top K nearest neighbors of the query image in terms of similarity in the multi-class bag feature space. The classification approach achieves high classification accuracy, and the retrieval of clinically-relevant images not only facilitates utilization of the vast amount of hidden diagnostic knowledge in the database, but also improves the efficiency and accuracy of DR lesion diagnosis and assessment.

Multi-stage classification method oriented to aerial image based on low-rank recovery and multi-feature fusion sparse representation.

PubMed

Ma, Xu; Cheng, Yongmei; Hao, Shuai

2016-12-10

Automatic classification of terrain surfaces from an aerial image is essential for an autonomous unmanned aerial vehicle (UAV) landing at an unprepared site by using vision. Diverse terrain surfaces may show similar spectral properties due to the illumination and noise that easily cause poor classification performance. To address this issue, a multi-stage classification algorithm based on low-rank recovery and multi-feature fusion sparse representation is proposed. First, color moments and Gabor texture feature are extracted from training data and stacked as column vectors of a dictionary. Then we perform low-rank matrix recovery for the dictionary by using augmented Lagrange multipliers and construct a multi-stage terrain classifier. Experimental results on an aerial map database that we prepared verify the classification accuracy and robustness of the proposed method.

Camera-Model Identification Using Markovian Transition Probability Matrix

NASA Astrophysics Data System (ADS)

Xu, Guanshuo; Gao, Shang; Shi, Yun Qing; Hu, Ruimin; Su, Wei

Detecting the (brands and) models of digital cameras from given digital images has become a popular research topic in the field of digital forensics. As most of images are JPEG compressed before they are output from cameras, we propose to use an effective image statistical model to characterize the difference JPEG 2-D arrays of Y and Cb components from the JPEG images taken by various camera models. Specifically, the transition probability matrices derived from four different directional Markov processes applied to the image difference JPEG 2-D arrays are used to identify statistical difference caused by image formation pipelines inside different camera models. All elements of the transition probability matrices, after a thresholding technique, are directly used as features for classification purpose. Multi-class support vector machines (SVM) are used as the classification tool. The effectiveness of our proposed statistical model is demonstrated by large-scale experimental results.

Multi-sparse dictionary colorization algorithm based on the feature classification and detail enhancement

NASA Astrophysics Data System (ADS)

Yan, Dan; Bai, Lianfa; Zhang, Yi; Han, Jing

2018-02-01

For the problems of missing details and performance of the colorization based on sparse representation, we propose a conceptual model framework for colorizing gray-scale images, and then a multi-sparse dictionary colorization algorithm based on the feature classification and detail enhancement (CEMDC) is proposed based on this framework. The algorithm can achieve a natural colorized effect for a gray-scale image, and it is consistent with the human vision. First, the algorithm establishes a multi-sparse dictionary classification colorization model. Then, to improve the accuracy rate of the classification, the corresponding local constraint algorithm is proposed. Finally, we propose a detail enhancement based on Laplacian Pyramid, which is effective in solving the problem of missing details and improving the speed of image colorization. In addition, the algorithm not only realizes the colorization of the visual gray-scale image, but also can be applied to the other areas, such as color transfer between color images, colorizing gray fusion images, and infrared images.

Classification of multiple sclerosis lesions using adaptive dictionary learning.

PubMed

Deshpande, Hrishikesh; Maurel, Pierre; Barillot, Christian

2015-12-01

This paper presents a sparse representation and an adaptive dictionary learning based method for automated classification of multiple sclerosis (MS) lesions in magnetic resonance (MR) images. Manual delineation of MS lesions is a time-consuming task, requiring neuroradiology experts to analyze huge volume of MR data. This, in addition to the high intra- and inter-observer variability necessitates the requirement of automated MS lesion classification methods. Among many image representation models and classification methods that can be used for such purpose, we investigate the use of sparse modeling. In the recent years, sparse representation has evolved as a tool in modeling data using a few basis elements of an over-complete dictionary and has found applications in many image processing tasks including classification. We propose a supervised classification approach by learning dictionaries specific to the lesions and individual healthy brain tissues, which include white matter (WM), gray matter (GM) and cerebrospinal fluid (CSF). The size of the dictionaries learned for each class plays a major role in data representation but it is an even more crucial element in the case of competitive classification. Our approach adapts the size of the dictionary for each class, depending on the complexity of the underlying data. The algorithm is validated using 52 multi-sequence MR images acquired from 13 MS patients. The results demonstrate the effectiveness of our approach in MS lesion classification. Copyright © 2015 Elsevier Ltd. All rights reserved.

Object-oriented recognition of high-resolution remote sensing image

NASA Astrophysics Data System (ADS)

Wang, Yongyan; Li, Haitao; Chen, Hong; Xu, Yuannan

2016-01-01

With the development of remote sensing imaging technology and the improvement of multi-source image's resolution in satellite visible light, multi-spectral and hyper spectral , the high resolution remote sensing image has been widely used in various fields, for example military field, surveying and mapping, geophysical prospecting, environment and so forth. In remote sensing image, the segmentation of ground targets, feature extraction and the technology of automatic recognition are the hotspot and difficulty in the research of modern information technology. This paper also presents an object-oriented remote sensing image scene classification method. The method is consist of vehicles typical objects classification generation, nonparametric density estimation theory, mean shift segmentation theory, multi-scale corner detection algorithm, local shape matching algorithm based on template. Remote sensing vehicles image classification software system is designed and implemented to meet the requirements .

Feature extraction based on extended multi-attribute profiles and sparse autoencoder for remote sensing image classification

NASA Astrophysics Data System (ADS)

Teffahi, Hanane; Yao, Hongxun; Belabid, Nasreddine; Chaib, Souleyman

2018-02-01

The satellite images with very high spatial resolution have been recently widely used in image classification topic as it has become challenging task in remote sensing field. Due to a number of limitations such as the redundancy of features and the high dimensionality of the data, different classification methods have been proposed for remote sensing images classification particularly the methods using feature extraction techniques. This paper propose a simple efficient method exploiting the capability of extended multi-attribute profiles (EMAP) with sparse autoencoder (SAE) for remote sensing image classification. The proposed method is used to classify various remote sensing datasets including hyperspectral and multispectral images by extracting spatial and spectral features based on the combination of EMAP and SAE by linking them to kernel support vector machine (SVM) for classification. Experiments on new hyperspectral image "Huston data" and multispectral image "Washington DC data" shows that this new scheme can achieve better performance of feature learning than the primitive features, traditional classifiers and ordinary autoencoder and has huge potential to achieve higher accuracy for classification in short running time.

Multi-Modality Cascaded Convolutional Neural Networks for Alzheimer's Disease Diagnosis.

PubMed

Liu, Manhua; Cheng, Danni; Wang, Kundong; Wang, Yaping

2018-03-23

Accurate and early diagnosis of Alzheimer's disease (AD) plays important role for patient care and development of future treatment. Structural and functional neuroimages, such as magnetic resonance images (MRI) and positron emission tomography (PET), are providing powerful imaging modalities to help understand the anatomical and functional neural changes related to AD. In recent years, machine learning methods have been widely studied on analysis of multi-modality neuroimages for quantitative evaluation and computer-aided-diagnosis (CAD) of AD. Most existing methods extract the hand-craft imaging features after image preprocessing such as registration and segmentation, and then train a classifier to distinguish AD subjects from other groups. This paper proposes to construct cascaded convolutional neural networks (CNNs) to learn the multi-level and multimodal features of MRI and PET brain images for AD classification. First, multiple deep 3D-CNNs are constructed on different local image patches to transform the local brain image into more compact high-level features. Then, an upper high-level 2D-CNN followed by softmax layer is cascaded to ensemble the high-level features learned from the multi-modality and generate the latent multimodal correlation features of the corresponding image patches for classification task. Finally, these learned features are combined by a fully connected layer followed by softmax layer for AD classification. The proposed method can automatically learn the generic multi-level and multimodal features from multiple imaging modalities for classification, which are robust to the scale and rotation variations to some extent. No image segmentation and rigid registration are required in pre-processing the brain images. Our method is evaluated on the baseline MRI and PET images of 397 subjects including 93 AD patients, 204 mild cognitive impairment (MCI, 76 pMCI +128 sMCI) and 100 normal controls (NC) from Alzheimer's Disease Neuroimaging Initiative (ADNI) database. Experimental results show that the proposed method achieves an accuracy of 93.26% for classification of AD vs. NC and 82.95% for classification pMCI vs. NC, demonstrating the promising classification performance.

Drug-related webpages classification based on multi-modal local decision fusion

NASA Astrophysics Data System (ADS)

Hu, Ruiguang; Su, Xiaojing; Liu, Yanxin

2018-03-01

In this paper, multi-modal local decision fusion is used for drug-related webpages classification. First, meaningful text are extracted through HTML parsing, and effective images are chosen by the FOCARSS algorithm. Second, six SVM classifiers are trained for six kinds of drug-taking instruments, which are represented by PHOG. One SVM classifier is trained for the cannabis, which is represented by the mid-feature of BOW model. For each instance in a webpage, seven SVMs give seven labels for its image, and other seven labels are given by searching the names of drug-taking instruments and cannabis in its related text. Concatenating seven labels of image and seven labels of text, the representation of those instances in webpages are generated. Last, Multi-Instance Learning is used to classify those drugrelated webpages. Experimental results demonstrate that the classification accuracy of multi-instance learning with multi-modal local decision fusion is much higher than those of single-modal classification.

Multi-task linear programming discriminant analysis for the identification of progressive MCI individuals.

PubMed

Yu, Guan; Liu, Yufeng; Thung, Kim-Han; Shen, Dinggang

2014-01-01

Accurately identifying mild cognitive impairment (MCI) individuals who will progress to Alzheimer's disease (AD) is very important for making early interventions. Many classification methods focus on integrating multiple imaging modalities such as magnetic resonance imaging (MRI) and fluorodeoxyglucose positron emission tomography (FDG-PET). However, the main challenge for MCI classification using multiple imaging modalities is the existence of a lot of missing data in many subjects. For example, in the Alzheimer's Disease Neuroimaging Initiative (ADNI) study, almost half of the subjects do not have PET images. In this paper, we propose a new and flexible binary classification method, namely Multi-task Linear Programming Discriminant (MLPD) analysis, for the incomplete multi-source feature learning. Specifically, we decompose the classification problem into different classification tasks, i.e., one for each combination of available data sources. To solve all different classification tasks jointly, our proposed MLPD method links them together by constraining them to achieve the similar estimated mean difference between the two classes (under classification) for those shared features. Compared with the state-of-the-art incomplete Multi-Source Feature (iMSF) learning method, instead of constraining different classification tasks to choose a common feature subset for those shared features, MLPD can flexibly and adaptively choose different feature subsets for different classification tasks. Furthermore, our proposed MLPD method can be efficiently implemented by linear programming. To validate our MLPD method, we perform experiments on the ADNI baseline dataset with the incomplete MRI and PET images from 167 progressive MCI (pMCI) subjects and 226 stable MCI (sMCI) subjects. We further compared our method with the iMSF method (using incomplete MRI and PET images) and also the single-task classification method (using only MRI or only subjects with both MRI and PET images). Experimental results show very promising performance of our proposed MLPD method.

Multi-Task Linear Programming Discriminant Analysis for the Identification of Progressive MCI Individuals

PubMed Central

Yu, Guan; Liu, Yufeng; Thung, Kim-Han; Shen, Dinggang

2014-01-01

Accurately identifying mild cognitive impairment (MCI) individuals who will progress to Alzheimer's disease (AD) is very important for making early interventions. Many classification methods focus on integrating multiple imaging modalities such as magnetic resonance imaging (MRI) and fluorodeoxyglucose positron emission tomography (FDG-PET). However, the main challenge for MCI classification using multiple imaging modalities is the existence of a lot of missing data in many subjects. For example, in the Alzheimer's Disease Neuroimaging Initiative (ADNI) study, almost half of the subjects do not have PET images. In this paper, we propose a new and flexible binary classification method, namely Multi-task Linear Programming Discriminant (MLPD) analysis, for the incomplete multi-source feature learning. Specifically, we decompose the classification problem into different classification tasks, i.e., one for each combination of available data sources. To solve all different classification tasks jointly, our proposed MLPD method links them together by constraining them to achieve the similar estimated mean difference between the two classes (under classification) for those shared features. Compared with the state-of-the-art incomplete Multi-Source Feature (iMSF) learning method, instead of constraining different classification tasks to choose a common feature subset for those shared features, MLPD can flexibly and adaptively choose different feature subsets for different classification tasks. Furthermore, our proposed MLPD method can be efficiently implemented by linear programming. To validate our MLPD method, we perform experiments on the ADNI baseline dataset with the incomplete MRI and PET images from 167 progressive MCI (pMCI) subjects and 226 stable MCI (sMCI) subjects. We further compared our method with the iMSF method (using incomplete MRI and PET images) and also the single-task classification method (using only MRI or only subjects with both MRI and PET images). Experimental results show very promising performance of our proposed MLPD method. PMID:24820966

Image characterization by fractal descriptors in variational mode decomposition domain: Application to brain magnetic resonance

NASA Astrophysics Data System (ADS)

Lahmiri, Salim

2016-08-01

The main purpose of this work is to explore the usefulness of fractal descriptors estimated in multi-resolution domains to characterize biomedical digital image texture. In this regard, three multi-resolution techniques are considered: the well-known discrete wavelet transform (DWT) and the empirical mode decomposition (EMD), and; the newly introduced; variational mode decomposition mode (VMD). The original image is decomposed by the DWT, EMD, and VMD into different scales. Then, Fourier spectrum based fractal descriptors is estimated at specific scales and directions to characterize the image. The support vector machine (SVM) was used to perform supervised classification. The empirical study was applied to the problem of distinguishing between normal and abnormal brain magnetic resonance images (MRI) affected with Alzheimer disease (AD). Our results demonstrate that fractal descriptors estimated in VMD domain outperform those estimated in DWT and EMD domains; and also those directly estimated from the original image.

Multi-level discriminative dictionary learning with application to large scale image classification.

PubMed

Shen, Li; Sun, Gang; Huang, Qingming; Wang, Shuhui; Lin, Zhouchen; Wu, Enhua

2015-10-01

The sparse coding technique has shown flexibility and capability in image representation and analysis. It is a powerful tool in many visual applications. Some recent work has shown that incorporating the properties of task (such as discrimination for classification task) into dictionary learning is effective for improving the accuracy. However, the traditional supervised dictionary learning methods suffer from high computation complexity when dealing with large number of categories, making them less satisfactory in large scale applications. In this paper, we propose a novel multi-level discriminative dictionary learning method and apply it to large scale image classification. Our method takes advantage of hierarchical category correlation to encode multi-level discriminative information. Each internal node of the category hierarchy is associated with a discriminative dictionary and a classification model. The dictionaries at different layers are learnt to capture the information of different scales. Moreover, each node at lower layers also inherits the dictionary of its parent, so that the categories at lower layers can be described with multi-scale information. The learning of dictionaries and associated classification models is jointly conducted by minimizing an overall tree loss. The experimental results on challenging data sets demonstrate that our approach achieves excellent accuracy and competitive computation cost compared with other sparse coding methods for large scale image classification.

Multi-Feature Classification of Multi-Sensor Satellite Imagery Based on Dual-Polarimetric Sentinel-1A, Landsat-8 OLI, and Hyperion Images for Urban Land-Cover Classification

PubMed Central

Pan, Jianjun

2018-01-01

This paper focuses on evaluating the ability and contribution of using backscatter intensity, texture, coherence, and color features extracted from Sentinel-1A data for urban land cover classification and comparing different multi-sensor land cover mapping methods to improve classification accuracy. Both Landsat-8 OLI and Hyperion images were also acquired, in combination with Sentinel-1A data, to explore the potential of different multi-sensor urban land cover mapping methods to improve classification accuracy. The classification was performed using a random forest (RF) method. The results showed that the optimal window size of the combination of all texture features was 9 × 9, and the optimal window size was different for each individual texture feature. For the four different feature types, the texture features contributed the most to the classification, followed by the coherence and backscatter intensity features; and the color features had the least impact on the urban land cover classification. Satisfactory classification results can be obtained using only the combination of texture and coherence features, with an overall accuracy up to 91.55% and a kappa coefficient up to 0.8935, respectively. Among all combinations of Sentinel-1A-derived features, the combination of the four features had the best classification result. Multi-sensor urban land cover mapping obtained higher classification accuracy. The combination of Sentinel-1A and Hyperion data achieved higher classification accuracy compared to the combination of Sentinel-1A and Landsat-8 OLI images, with an overall accuracy of up to 99.12% and a kappa coefficient up to 0.9889. When Sentinel-1A data was added to Hyperion images, the overall accuracy and kappa coefficient were increased by 4.01% and 0.0519, respectively. PMID:29382073

Wavelet-based multicomponent denoising on GPU to improve the classification of hyperspectral images

NASA Astrophysics Data System (ADS)

Quesada-Barriuso, Pablo; Heras, Dora B.; Argüello, Francisco; Mouriño, J. C.

2017-10-01

Supervised classification allows handling a wide range of remote sensing hyperspectral applications. Enhancing the spatial organization of the pixels over the image has proven to be beneficial for the interpretation of the image content, thus increasing the classification accuracy. Denoising in the spatial domain of the image has been shown as a technique that enhances the structures in the image. This paper proposes a multi-component denoising approach in order to increase the classification accuracy when a classification method is applied. It is computed on multicore CPUs and NVIDIA GPUs. The method combines feature extraction based on a 1Ddiscrete wavelet transform (DWT) applied in the spectral dimension followed by an Extended Morphological Profile (EMP) and a classifier (SVM or ELM). The multi-component noise reduction is applied to the EMP just before the classification. The denoising recursively applies a separable 2D DWT after which the number of wavelet coefficients is reduced by using a threshold. Finally, inverse 2D-DWT filters are applied to reconstruct the noise free original component. The computational cost of the classifiers as well as the cost of the whole classification chain is high but it is reduced achieving real-time behavior for some applications through their computation on NVIDIA multi-GPU platforms.

Comparison of wheat classification accuracy using different classifiers of the image-100 system

NASA Technical Reports Server (NTRS)

Dejesusparada, N. (Principal Investigator); Chen, S. C.; Moreira, M. A.; Delima, A. M.

1981-01-01

Classification results using single-cell and multi-cell signature acquisition options, a point-by-point Gaussian maximum-likelihood classifier, and K-means clustering of the Image-100 system are presented. Conclusions reached are that: a better indication of correct classification can be provided by using a test area which contains various cover types of the study area; classification accuracy should be evaluated considering both the percentages of correct classification and error of commission; supervised classification approaches are better than K-means clustering; Gaussian distribution maximum likelihood classifier is better than Single-cell and Multi-cell Signature Acquisition Options of the Image-100 system; and in order to obtain a high classification accuracy in a large and heterogeneous crop area, using Gaussian maximum-likelihood classifier, homogeneous spectral subclasses of the study crop should be created to derive training statistics.

Large Margin Multi-Modal Multi-Task Feature Extraction for Image Classification.

PubMed

Yong Luo; Yonggang Wen; Dacheng Tao; Jie Gui; Chao Xu

2016-01-01

The features used in many image analysis-based applications are frequently of very high dimension. Feature extraction offers several advantages in high-dimensional cases, and many recent studies have used multi-task feature extraction approaches, which often outperform single-task feature extraction approaches. However, most of these methods are limited in that they only consider data represented by a single type of feature, even though features usually represent images from multiple modalities. We, therefore, propose a novel large margin multi-modal multi-task feature extraction (LM3FE) framework for handling multi-modal features for image classification. In particular, LM3FE simultaneously learns the feature extraction matrix for each modality and the modality combination coefficients. In this way, LM3FE not only handles correlated and noisy features, but also utilizes the complementarity of different modalities to further help reduce feature redundancy in each modality. The large margin principle employed also helps to extract strongly predictive features, so that they are more suitable for prediction (e.g., classification). An alternating algorithm is developed for problem optimization, and each subproblem can be efficiently solved. Experiments on two challenging real-world image data sets demonstrate the effectiveness and superiority of the proposed method.

3D multi-view convolutional neural networks for lung nodule classification

PubMed Central

Kang, Guixia; Hou, Beibei; Zhang, Ningbo

2017-01-01

The 3D convolutional neural network (CNN) is able to make full use of the spatial 3D context information of lung nodules, and the multi-view strategy has been shown to be useful for improving the performance of 2D CNN in classifying lung nodules. In this paper, we explore the classification of lung nodules using the 3D multi-view convolutional neural networks (MV-CNN) with both chain architecture and directed acyclic graph architecture, including 3D Inception and 3D Inception-ResNet. All networks employ the multi-view-one-network strategy. We conduct a binary classification (benign and malignant) and a ternary classification (benign, primary malignant and metastatic malignant) on Computed Tomography (CT) images from Lung Image Database Consortium and Image Database Resource Initiative database (LIDC-IDRI). All results are obtained via 10-fold cross validation. As regards the MV-CNN with chain architecture, results show that the performance of 3D MV-CNN surpasses that of 2D MV-CNN by a significant margin. Finally, a 3D Inception network achieved an error rate of 4.59% for the binary classification and 7.70% for the ternary classification, both of which represent superior results for the corresponding task. We compare the multi-view-one-network strategy with the one-view-one-network strategy. The results reveal that the multi-view-one-network strategy can achieve a lower error rate than the one-view-one-network strategy. PMID:29145492

Multi-Modal Curriculum Learning for Semi-Supervised Image Classification.

PubMed

Gong, Chen; Tao, Dacheng; Maybank, Stephen J; Liu, Wei; Kang, Guoliang; Yang, Jie

2016-07-01

Semi-supervised image classification aims to classify a large quantity of unlabeled images by typically harnessing scarce labeled images. Existing semi-supervised methods often suffer from inadequate classification accuracy when encountering difficult yet critical images, such as outliers, because they treat all unlabeled images equally and conduct classifications in an imperfectly ordered sequence. In this paper, we employ the curriculum learning methodology by investigating the difficulty of classifying every unlabeled image. The reliability and the discriminability of these unlabeled images are particularly investigated for evaluating their difficulty. As a result, an optimized image sequence is generated during the iterative propagations, and the unlabeled images are logically classified from simple to difficult. Furthermore, since images are usually characterized by multiple visual feature descriptors, we associate each kind of features with a teacher, and design a multi-modal curriculum learning (MMCL) strategy to integrate the information from different feature modalities. In each propagation, each teacher analyzes the difficulties of the currently unlabeled images from its own modality viewpoint. A consensus is subsequently reached among all the teachers, determining the currently simplest images (i.e., a curriculum), which are to be reliably classified by the multi-modal learner. This well-organized propagation process leveraging multiple teachers and one learner enables our MMCL to outperform five state-of-the-art methods on eight popular image data sets.

Integrating multisource imagery and GIS analysis for mapping Bermuda`s benthic habitats

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vierros, M.K.

1997-06-01

Bermuda is a group of isolated oceanic situated in the northwest Atlantic Ocean and surrounded by the Sargasso Sea. Bermuda possesses the northernmost coral reefs and mangroves in the Atlantic Ocean, and because of its high population density, both the terrestrial and marine environments are under intense human pressure. Although a long record of scientific research exists, this study is the first attempt to comprehensively map the area`s benthic habitats, despite the need for such a map for resource assessment and management purposes. Multi-source and multi-date imagery were used for producing the habitat map due to lack of a completemore » up-to-date image. Classifications were performed with SPOT data, and the results verified from recent aerial photography and current aerial video, along with extensive ground truthing. Stratification of the image into regions prior to classification reduced the confusing effects of varying water depth. Classification accuracy in shallow areas was increased by derivation of a texture pseudo-channel, while bathymetry was used as a classification tool in deeper areas, where local patterns of zonation were well known. Because of seasonal variation in extent of seagrasses, a classification scheme based on density could not be used. Instead, a set of classes based on the seagrass area`s exposure to the open ocean were developed. The resulting habitat map is currently being assessed for accuracy with promising preliminary results, indicating its usefulness as a basis for future resource assessment studies.« less

Label-aligned Multi-task Feature Learning for Multimodal Classification of Alzheimer’s Disease and Mild Cognitive Impairment

PubMed Central

Zu, Chen; Jie, Biao; Liu, Mingxia; Chen, Songcan

2015-01-01

Multimodal classification methods using different modalities of imaging and non-imaging data have recently shown great advantages over traditional single-modality-based ones for diagnosis and prognosis of Alzheimer’s disease (AD), as well as its prodromal stage, i.e., mild cognitive impairment (MCI). However, to the best of our knowledge, most existing methods focus on mining the relationship across multiple modalities of the same subjects, while ignoring the potentially useful relationship across different subjects. Accordingly, in this paper, we propose a novel learning method for multimodal classification of AD/MCI, by fully exploring the relationships across both modalities and subjects. Specifically, our proposed method includes two subsequent components, i.e., label-aligned multi-task feature selection and multimodal classification. In the first step, the feature selection learning from multiple modalities are treated as different learning tasks and a group sparsity regularizer is imposed to jointly select a subset of relevant features. Furthermore, to utilize the discriminative information among labeled subjects, a new label-aligned regularization term is added into the objective function of standard multi-task feature selection, where label-alignment means that all multi-modality subjects with the same class labels should be closer in the new feature-reduced space. In the second step, a multi-kernel support vector machine (SVM) is adopted to fuse the selected features from multi-modality data for final classification. To validate our method, we perform experiments on the Alzheimer’s Disease Neuroimaging Initiative (ADNI) database using baseline MRI and FDG-PET imaging data. The experimental results demonstrate that our proposed method achieves better classification performance compared with several state-of-the-art methods for multimodal classification of AD/MCI. PMID:26572145

Spectral and spatial resolution analysis of multi sensor satellite data for coral reef mapping: Tioman Island, Malaysia

NASA Astrophysics Data System (ADS)

Pradhan, Biswajeet; Kabiri, Keivan

2012-07-01

This paper describes an assessment of coral reef mapping using multi sensor satellite images such as Landsat ETM, SPOT and IKONOS images for Tioman Island, Malaysia. The study area is known to be one of the best Islands in South East Asia for its unique collection of diversified coral reefs and serves host to thousands of tourists every year. For the coral reef identification, classification and analysis, Landsat ETM, SPOT and IKONOS images were collected processed and classified using hierarchical classification schemes. At first, Decision tree classification method was implemented to separate three main land cover classes i.e. water, rural and vegetation and then maximum likelihood supervised classification method was used to classify these main classes. The accuracy of the classification result is evaluated by a separated test sample set, which is selected based on the fieldwork survey and view interpretation from IKONOS image. Few types of ancillary data in used are: (a) DGPS ground control points; (b) Water quality parameters measured by Hydrolab DS4a; (c) Sea-bed substrates spectrum measured by Unispec and; (d) Landcover observation photos along Tioman island coastal area. The overall accuracy of the final classification result obtained was 92.25% with the kappa coefficient is 0.8940. Key words: Coral reef, Multi-spectral Segmentation, Pixel-Based Classification, Decision Tree, Tioman Island

Multi-class geospatial object detection and geographic image classification based on collection of part detectors

NASA Astrophysics Data System (ADS)

Cheng, Gong; Han, Junwei; Zhou, Peicheng; Guo, Lei

2014-12-01

The rapid development of remote sensing technology has facilitated us the acquisition of remote sensing images with higher and higher spatial resolution, but how to automatically understand the image contents is still a big challenge. In this paper, we develop a practical and rotation-invariant framework for multi-class geospatial object detection and geographic image classification based on collection of part detectors (COPD). The COPD is composed of a set of representative and discriminative part detectors, where each part detector is a linear support vector machine (SVM) classifier used for the detection of objects or recurring spatial patterns within a certain range of orientation. Specifically, when performing multi-class geospatial object detection, we learn a set of seed-based part detectors where each part detector corresponds to a particular viewpoint of an object class, so the collection of them provides a solution for rotation-invariant detection of multi-class objects. When performing geographic image classification, we utilize a large number of pre-trained part detectors to discovery distinctive visual parts from images and use them as attributes to represent the images. Comprehensive evaluations on two remote sensing image databases and comparisons with some state-of-the-art approaches demonstrate the effectiveness and superiority of the developed framework.

Semantic classification of business images

NASA Astrophysics Data System (ADS)

Erol, Berna; Hull, Jonathan J.

2006-01-01

Digital cameras are becoming increasingly common for capturing information in business settings. In this paper, we describe a novel method for classifying images into the following semantic classes: document, whiteboard, business card, slide, and regular images. Our method is based on combining low-level image features, such as text color, layout, and handwriting features with high-level OCR output analysis. Several Support Vector Machine Classifiers are combined for multi-class classification of input images. The system yields 95% accuracy in classification.

Application of Deep Learning of Multi-Temporal SENTINEL-1 Images for the Classification of Coastal Vegetation Zone of the Danube Delta

NASA Astrophysics Data System (ADS)

Niculescu, S.; Ienco, D.; Hanganu, J.

2018-04-01

Land cover is a fundamental variable for regional planning, as well as for the study and understanding of the environment. This work propose a multi-temporal approach relying on a fusion of radar multi-sensor data and information collected by the latest sensor (Sentinel-1) with a view to obtaining better results than traditional image processing techniques. The Danube Delta is the site for this work. The spatial approach relies on new spatial analysis technologies and methodologies: Deep Learning of multi-temporal Sentinel-1. We propose a deep learning network for image classification which exploits the multi-temporal characteristic of Sentinel-1 data. The model we employ is a Gated Recurrent Unit (GRU) Network, a recurrent neural network that explicitly takes into account the time dimension via a gated mechanism to perform the final prediction. The main quality of the GRU network is its ability to consider only the important part of the information coming from the temporal data discarding the irrelevant information via a forgetting mechanism. We propose to use such network structure to classify a series of images Sentinel-1 (20 Sentinel-1 images acquired between 9.10.2014 and 01.04.2016). The results are compared with results of the classification of Random Forest.

Multi-phase classification by a least-squares support vector machine approach in tomography images of geological samples

NASA Astrophysics Data System (ADS)

Khan, Faisal; Enzmann, Frieder; Kersten, Michael

2016-03-01

Image processing of X-ray-computed polychromatic cone-beam micro-tomography (μXCT) data of geological samples mainly involves artefact reduction and phase segmentation. For the former, the main beam-hardening (BH) artefact is removed by applying a best-fit quadratic surface algorithm to a given image data set (reconstructed slice), which minimizes the BH offsets of the attenuation data points from that surface. A Matlab code for this approach is provided in the Appendix. The final BH-corrected image is extracted from the residual data or from the difference between the surface elevation values and the original grey-scale values. For the segmentation, we propose a novel least-squares support vector machine (LS-SVM, an algorithm for pixel-based multi-phase classification) approach. A receiver operating characteristic (ROC) analysis was performed on BH-corrected and uncorrected samples to show that BH correction is in fact an important prerequisite for accurate multi-phase classification. The combination of the two approaches was thus used to classify successfully three different more or less complex multi-phase rock core samples.

Determination of Electron Optical Properties for Aperture Zoom Lenses Using an Artificial Neural Network Method.

PubMed

Isik, Nimet

2016-04-01

Multi-element electrostatic aperture lens systems are widely used to control electron or charged particle beams in many scientific instruments. By means of applied voltages, these lens systems can be operated for different purposes. In this context, numerous methods have been performed to calculate focal properties of these lenses. In this study, an artificial neural network (ANN) classification method is utilized to determine the focused/unfocused charged particle beam in the image point as a function of lens voltages for multi-element electrostatic aperture lenses. A data set for training and testing of ANN is taken from the SIMION 8.1 simulation program, which is a well known and proven accuracy program in charged particle optics. Mean squared error results of this study indicate that the ANN classification method provides notable performance characteristics for electrostatic aperture zoom lenses.

Alexnet Feature Extraction and Multi-Kernel Learning for Objectoriented Classification

NASA Astrophysics Data System (ADS)

Ding, L.; Li, H.; Hu, C.; Zhang, W.; Wang, S.

2018-04-01

In view of the fact that the deep convolutional neural network has stronger ability of feature learning and feature expression, an exploratory research is done on feature extraction and classification for high resolution remote sensing images. Taking the Google image with 0.3 meter spatial resolution in Ludian area of Yunnan Province as an example, the image segmentation object was taken as the basic unit, and the pre-trained AlexNet deep convolution neural network model was used for feature extraction. And the spectral features, AlexNet features and GLCM texture features are combined with multi-kernel learning and SVM classifier, finally the classification results were compared and analyzed. The results show that the deep convolution neural network can extract more accurate remote sensing image features, and significantly improve the overall accuracy of classification, and provide a reference value for earthquake disaster investigation and remote sensing disaster evaluation.

Building a Multi-Discipline Digital Library Through Extending the Dienst Protocol

NASA Technical Reports Server (NTRS)

Nelson, Michael L.; Maly, Kurt; Shen, Stewart N. T.

1997-01-01

The purpose of this project is to establish multi-discipline capability for a unified, canonical digital library service for scientific and technical information (STI). This is accomplished by extending the Dienst Protocol to be aware of subject classification of a servers holdings. We propose a hierarchical, general, and extendible subject classification that can encapsulate existing classification systems.

Multi-Site Diagnostic Classification of Schizophrenia Using Discriminant Deep Learning with Functional Connectivity MRI.

PubMed

Zeng, Ling-Li; Wang, Huaning; Hu, Panpan; Yang, Bo; Pu, Weidan; Shen, Hui; Chen, Xingui; Liu, Zhening; Yin, Hong; Tan, Qingrong; Wang, Kai; Hu, Dewen

2018-04-01

A lack of a sufficiently large sample at single sites causes poor generalizability in automatic diagnosis classification of heterogeneous psychiatric disorders such as schizophrenia based on brain imaging scans. Advanced deep learning methods may be capable of learning subtle hidden patterns from high dimensional imaging data, overcome potential site-related variation, and achieve reproducible cross-site classification. However, deep learning-based cross-site transfer classification, despite less imaging site-specificity and more generalizability of diagnostic models, has not been investigated in schizophrenia. A large multi-site functional MRI sample (n = 734, including 357 schizophrenic patients from seven imaging resources) was collected, and a deep discriminant autoencoder network, aimed at learning imaging site-shared functional connectivity features, was developed to discriminate schizophrenic individuals from healthy controls. Accuracies of approximately 85·0% and 81·0% were obtained in multi-site pooling classification and leave-site-out transfer classification, respectively. The learned functional connectivity features revealed dysregulation of the cortical-striatal-cerebellar circuit in schizophrenia, and the most discriminating functional connections were primarily located within and across the default, salience, and control networks. The findings imply that dysfunctional integration of the cortical-striatal-cerebellar circuit across the default, salience, and control networks may play an important role in the "disconnectivity" model underlying the pathophysiology of schizophrenia. The proposed discriminant deep learning method may be capable of learning reliable connectome patterns and help in understanding the pathophysiology and achieving accurate prediction of schizophrenia across multiple independent imaging sites. Copyright © 2018 German Center for Neurodegenerative Diseases (DZNE). Published by Elsevier B.V. All rights reserved.

Automated analysis and classification of melanocytic tumor on skin whole slide images.

PubMed

Xu, Hongming; Lu, Cheng; Berendt, Richard; Jha, Naresh; Mandal, Mrinal

2018-06-01

This paper presents a computer-aided technique for automated analysis and classification of melanocytic tumor on skin whole slide biopsy images. The proposed technique consists of four main modules. First, skin epidermis and dermis regions are segmented by a multi-resolution framework. Next, epidermis analysis is performed, where a set of epidermis features reflecting nuclear morphologies and spatial distributions is computed. In parallel with epidermis analysis, dermis analysis is also performed, where dermal cell nuclei are segmented and a set of textural and cytological features are computed. Finally, the skin melanocytic image is classified into different categories such as melanoma, nevus or normal tissue by using a multi-class support vector machine (mSVM) with extracted epidermis and dermis features. Experimental results on 66 skin whole slide images indicate that the proposed technique achieves more than 95% classification accuracy, which suggests that the technique has the potential to be used for assisting pathologists on skin biopsy image analysis and classification. Copyright © 2018 Elsevier Ltd. All rights reserved.

Exploring the complementarity of THz pulse imaging and DCE-MRIs: Toward a unified multi-channel classification and a deep learning framework.

PubMed

Yin, X-X; Zhang, Y; Cao, J; Wu, J-L; Hadjiloucas, S

2016-12-01

We provide a comprehensive account of recent advances in biomedical image analysis and classification from two complementary imaging modalities: terahertz (THz) pulse imaging and dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI). The work aims to highlight underlining commonalities in both data structures so that a common multi-channel data fusion framework can be developed. Signal pre-processing in both datasets is discussed briefly taking into consideration advances in multi-resolution analysis and model based fractional order calculus system identification. Developments in statistical signal processing using principal component and independent component analysis are also considered. These algorithms have been developed independently by the THz-pulse imaging and DCE-MRI communities, and there is scope to place them in a common multi-channel framework to provide better software standardization at the pre-processing de-noising stage. A comprehensive discussion of feature selection strategies is also provided and the importance of preserving textural information is highlighted. Feature extraction and classification methods taking into consideration recent advances in support vector machine (SVM) and extreme learning machine (ELM) classifiers and their complex extensions are presented. An outlook on Clifford algebra classifiers and deep learning techniques suitable to both types of datasets is also provided. The work points toward the direction of developing a new unified multi-channel signal processing framework for biomedical image analysis that will explore synergies from both sensing modalities for inferring disease proliferation. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Multi-National Banknote Classification Based on Visible-light Line Sensor and Convolutional Neural Network.

PubMed

Pham, Tuyen Danh; Lee, Dong Eun; Park, Kang Ryoung

2017-07-08

Automatic recognition of banknotes is applied in payment facilities, such as automated teller machines (ATMs) and banknote counters. Besides the popular approaches that focus on studying the methods applied to various individual types of currencies, there have been studies conducted on simultaneous classification of banknotes from multiple countries. However, their methods were conducted with limited numbers of banknote images, national currencies, and denominations. To address this issue, we propose a multi-national banknote classification method based on visible-light banknote images captured by a one-dimensional line sensor and classified by a convolutional neural network (CNN) considering the size information of each denomination. Experiments conducted on the combined banknote image database of six countries with 62 denominations gave a classification accuracy of 100%, and results show that our proposed algorithm outperforms previous methods.

Multi-National Banknote Classification Based on Visible-light Line Sensor and Convolutional Neural Network

PubMed Central

Pham, Tuyen Danh; Lee, Dong Eun; Park, Kang Ryoung

2017-01-01

Automatic recognition of banknotes is applied in payment facilities, such as automated teller machines (ATMs) and banknote counters. Besides the popular approaches that focus on studying the methods applied to various individual types of currencies, there have been studies conducted on simultaneous classification of banknotes from multiple countries. However, their methods were conducted with limited numbers of banknote images, national currencies, and denominations. To address this issue, we propose a multi-national banknote classification method based on visible-light banknote images captured by a one-dimensional line sensor and classified by a convolutional neural network (CNN) considering the size information of each denomination. Experiments conducted on the combined banknote image database of six countries with 62 denominations gave a classification accuracy of 100%, and results show that our proposed algorithm outperforms previous methods. PMID:28698466

Object-Oriented Classification of Sugarcane Using Time-Series Middle-Resolution Remote Sensing Data Based on AdaBoost

PubMed Central

Zhou, Zhen; Huang, Jingfeng; Wang, Jing; Zhang, Kangyu; Kuang, Zhaomin; Zhong, Shiquan; Song, Xiaodong

2015-01-01

Most areas planted with sugarcane are located in southern China. However, remote sensing of sugarcane has been limited because useable remote sensing data are limited due to the cloudy climate of this region during the growing season and severe spectral mixing with other crops. In this study, we developed a methodology for automatically mapping sugarcane over large areas using time-series middle-resolution remote sensing data. For this purpose, two major techniques were used, the object-oriented method (OOM) and data mining (DM). In addition, time-series Chinese HJ-1 CCD images were obtained during the sugarcane growing period. Image objects were generated using a multi-resolution segmentation algorithm, and DM was implemented using the AdaBoost algorithm, which generated the prediction model. The prediction model was applied to the HJ-1 CCD time-series image objects, and then a map of the sugarcane planting area was produced. The classification accuracy was evaluated using independent field survey sampling points. The confusion matrix analysis showed that the overall classification accuracy reached 93.6% and that the Kappa coefficient was 0.85. Thus, the results showed that this method is feasible, efficient, and applicable for extrapolating the classification of other crops in large areas where the application of high-resolution remote sensing data is impractical due to financial considerations or because qualified images are limited. PMID:26528811

Object-Oriented Classification of Sugarcane Using Time-Series Middle-Resolution Remote Sensing Data Based on AdaBoost.

PubMed

Zhou, Zhen; Huang, Jingfeng; Wang, Jing; Zhang, Kangyu; Kuang, Zhaomin; Zhong, Shiquan; Song, Xiaodong

2015-01-01

Most areas planted with sugarcane are located in southern China. However, remote sensing of sugarcane has been limited because useable remote sensing data are limited due to the cloudy climate of this region during the growing season and severe spectral mixing with other crops. In this study, we developed a methodology for automatically mapping sugarcane over large areas using time-series middle-resolution remote sensing data. For this purpose, two major techniques were used, the object-oriented method (OOM) and data mining (DM). In addition, time-series Chinese HJ-1 CCD images were obtained during the sugarcane growing period. Image objects were generated using a multi-resolution segmentation algorithm, and DM was implemented using the AdaBoost algorithm, which generated the prediction model. The prediction model was applied to the HJ-1 CCD time-series image objects, and then a map of the sugarcane planting area was produced. The classification accuracy was evaluated using independent field survey sampling points. The confusion matrix analysis showed that the overall classification accuracy reached 93.6% and that the Kappa coefficient was 0.85. Thus, the results showed that this method is feasible, efficient, and applicable for extrapolating the classification of other crops in large areas where the application of high-resolution remote sensing data is impractical due to financial considerations or because qualified images are limited.

Material classification and automatic content enrichment of images using supervised learning and knowledge bases

NASA Astrophysics Data System (ADS)

Mallepudi, Sri Abhishikth; Calix, Ricardo A.; Knapp, Gerald M.

2011-02-01

In recent years there has been a rapid increase in the size of video and image databases. Effective searching and retrieving of images from these databases is a significant current research area. In particular, there is a growing interest in query capabilities based on semantic image features such as objects, locations, and materials, known as content-based image retrieval. This study investigated mechanisms for identifying materials present in an image. These capabilities provide additional information impacting conditional probabilities about images (e.g. objects made of steel are more likely to be buildings). These capabilities are useful in Building Information Modeling (BIM) and in automatic enrichment of images. I2T methodologies are a way to enrich an image by generating text descriptions based on image analysis. In this work, a learning model is trained to detect certain materials in images. To train the model, an image dataset was constructed containing single material images of bricks, cloth, grass, sand, stones, and wood. For generalization purposes, an additional set of 50 images containing multiple materials (some not used in training) was constructed. Two different supervised learning classification models were investigated: a single multi-class SVM classifier, and multiple binary SVM classifiers (one per material). Image features included Gabor filter parameters for texture, and color histogram data for RGB components. All classification accuracy scores using the SVM-based method were above 85%. The second model helped in gathering more information from the images since it assigned multiple classes to the images. A framework for the I2T methodology is presented.

a Region-Based Multi-Scale Approach for Object-Based Image Analysis

NASA Astrophysics Data System (ADS)

Kavzoglu, T.; Yildiz Erdemir, M.; Tonbul, H.

2016-06-01

Within the last two decades, object-based image analysis (OBIA) considering objects (i.e. groups of pixels) instead of pixels has gained popularity and attracted increasing interest. The most important stage of the OBIA is image segmentation that groups spectrally similar adjacent pixels considering not only the spectral features but also spatial and textural features. Although there are several parameters (scale, shape, compactness and band weights) to be set by the analyst, scale parameter stands out the most important parameter in segmentation process. Estimating optimal scale parameter is crucially important to increase the classification accuracy that depends on image resolution, image object size and characteristics of the study area. In this study, two scale-selection strategies were implemented in the image segmentation process using pan-sharped Qickbird-2 image. The first strategy estimates optimal scale parameters for the eight sub-regions. For this purpose, the local variance/rate of change (LV-RoC) graphs produced by the ESP-2 tool were analysed to determine fine, moderate and coarse scales for each region. In the second strategy, the image was segmented using the three candidate scale values (fine, moderate, coarse) determined from the LV-RoC graph calculated for whole image. The nearest neighbour classifier was applied in all segmentation experiments and equal number of pixels was randomly selected to calculate accuracy metrics (overall accuracy and kappa coefficient). Comparison of region-based and image-based segmentation was carried out on the classified images and found that region-based multi-scale OBIA produced significantly more accurate results than image-based single-scale OBIA. The difference in classification accuracy reached to 10% in terms of overall accuracy.

Robust multi-site MR data processing: iterative optimization of bias correction, tissue classification, and registration.

PubMed

Young Kim, Eun; Johnson, Hans J

2013-01-01

A robust multi-modal tool, for automated registration, bias correction, and tissue classification, has been implemented for large-scale heterogeneous multi-site longitudinal MR data analysis. This work focused on improving the an iterative optimization framework between bias-correction, registration, and tissue classification inspired from previous work. The primary contributions are robustness improvements from incorporation of following four elements: (1) utilize multi-modal and repeated scans, (2) incorporate high-deformable registration, (3) use extended set of tissue definitions, and (4) use of multi-modal aware intensity-context priors. The benefits of these enhancements were investigated by a series of experiments with both simulated brain data set (BrainWeb) and by applying to highly-heterogeneous data from a 32 site imaging study with quality assessments through the expert visual inspection. The implementation of this tool is tailored for, but not limited to, large-scale data processing with great data variation with a flexible interface. In this paper, we describe enhancements to a joint registration, bias correction, and the tissue classification, that improve the generalizability and robustness for processing multi-modal longitudinal MR scans collected at multi-sites. The tool was evaluated by using both simulated and simulated and human subject MRI images. With these enhancements, the results showed improved robustness for large-scale heterogeneous MRI processing.

A Coupled k-Nearest Neighbor Algorithm for Multi-Label Classification

DTIC Science & Technology

2015-05-22

classification, an image may contain several concepts simultaneously, such as beach, sunset and kangaroo . Such tasks are usually denoted as multi-label...informatics, a gene can belong to both metabolism and transcription classes; and in music categorization, a song may labeled as Mozart and sad. In the

Vision based nutrient deficiency classification in maize plants using multi class support vector machines

NASA Astrophysics Data System (ADS)

Leena, N.; Saju, K. K.

2018-04-01

Nutritional deficiencies in plants are a major concern for farmers as it affects productivity and thus profit. The work aims to classify nutritional deficiencies in maize plant in a non-destructive mannerusing image processing and machine learning techniques. The colored images of the leaves are analyzed and classified with multi-class support vector machine (SVM) method. Several images of maize leaves with known deficiencies like nitrogen, phosphorous and potassium (NPK) are used to train the SVM classifier prior to the classification of test images. The results show that the method was able to classify and identify nutritional deficiencies.

Multi-region analysis of longitudinal FDG-PET for the classification of Alzheimer’s disease

PubMed Central

Gray, Katherine R.; Wolz, Robin; Heckemann, Rolf A.; Aljabar, Paul; Hammers, Alexander; Rueckert, Daniel

2012-01-01

Imaging biomarkers for Alzheimer’s disease are desirable for improved diagnosis and monitoring, as well as drug discovery. Automated image-based classification of individual patients could provide valuable diagnostic support for clinicians, when considered alongside cognitive assessment scores. We investigate the value of combining cross-sectional and longitudinal multi-region FDG-PET information for classification, using clinical and imaging data from the Alzheimer’s Disease Neuroimaging Initiative. Whole-brain segmentations into 83 anatomically defined regions were automatically generated for baseline and 12-month FDG-PET images. Regional signal intensities were extracted at each timepoint, as well as changes in signal intensity over the follow-up period. Features were provided to a support vector machine classifier. By combining 12-month signal intensities and changes over 12 months, we achieve significantly increased classification performance compared with using any of the three feature sets independently. Based on this combined feature set, we report classification accuracies of 88% between patients with Alzheimer’s disease and elderly healthy controls, and 65% between patients with stable mild cognitive impairment and those who subsequently progressed to Alzheimer’s disease. We demonstrate that information extracted from serial FDG-PET through regional analysis can be used to achieve state-of-the-art classification of diagnostic groups in a realistic multi-centre setting. This finding may be usefully applied in the diagnosis of Alzheimer’s disease, predicting disease course in individuals with mild cognitive impairment, and in the selection of participants for clinical trials. PMID:22236449

Rule-based land use/land cover classification in coastal areas using seasonal remote sensing imagery: a case study from Lianyungang City, China.

PubMed

Yang, Xiaoyan; Chen, Longgao; Li, Yingkui; Xi, Wenjia; Chen, Longqian

2015-07-01

Land use/land cover (LULC) inventory provides an important dataset in regional planning and environmental assessment. To efficiently obtain the LULC inventory, we compared the LULC classifications based on single satellite imagery with a rule-based classification based on multi-seasonal imagery in Lianyungang City, a coastal city in China, using CBERS-02 (the 2nd China-Brazil Environmental Resource Satellites) images. The overall accuracies of the classification based on single imagery are 78.9, 82.8, and 82.0% in winter, early summer, and autumn, respectively. The rule-based classification improves the accuracy to 87.9% (kappa 0.85), suggesting that combining multi-seasonal images can considerably improve the classification accuracy over any single image-based classification. This method could also be used to analyze seasonal changes of LULC types, especially for those associated with tidal changes in coastal areas. The distribution and inventory of LULC types with an overall accuracy of 87.9% and a spatial resolution of 19.5 m can assist regional planning and environmental assessment efficiently in Lianyungang City. This rule-based classification provides a guidance to improve accuracy for coastal areas with distinct LULC temporal spectral features.

Multi-template tensor-based morphometry: Application to analysis of Alzheimer's disease

PubMed Central

Koikkalainen, Juha; Lötjönen, Jyrki; Thurfjell, Lennart; Rueckert, Daniel; Waldemar, Gunhild; Soininen, Hilkka

2012-01-01

In this paper methods for using multiple templates in tensor-based morphometry (TBM) are presented and comparedtothe conventional single-template approach. TBM analysis requires non-rigid registrations which are often subject to registration errors. When using multiple templates and, therefore, multiple registrations, it can be assumed that the registration errors are averaged and eventually compensated. Four different methods are proposed for multi-template TBM. The methods were evaluated using magnetic resonance (MR) images of healthy controls, patients with stable or progressive mild cognitive impairment (MCI), and patients with Alzheimer's disease (AD) from the ADNI database (N=772). The performance of TBM features in classifying images was evaluated both quantitatively and qualitatively. Classification results show that the multi-template methods are statistically significantly better than the single-template method. The overall classification accuracy was 86.0% for the classification of control and AD subjects, and 72.1%for the classification of stable and progressive MCI subjects. The statistical group-level difference maps produced using multi-template TBM were smoother, formed larger continuous regions, and had larger t-values than the maps obtained with single-template TBM. PMID:21419228

Multi-class SVM model for fMRI-based classification and grading of liver fibrosis

NASA Astrophysics Data System (ADS)

Freiman, M.; Sela, Y.; Edrei, Y.; Pappo, O.; Joskowicz, L.; Abramovitch, R.

2010-03-01

We present a novel non-invasive automatic method for the classification and grading of liver fibrosis from fMRI maps based on hepatic hemodynamic changes. This method automatically creates a model for liver fibrosis grading based on training datasets. Our supervised learning method evaluates hepatic hemodynamics from an anatomical MRI image and three T2*-W fMRI signal intensity time-course scans acquired during the breathing of air, air-carbon dioxide, and carbogen. It constructs a statistical model of liver fibrosis from these fMRI scans using a binary-based one-against-all multi class Support Vector Machine (SVM) classifier. We evaluated the resulting classification model with the leave-one out technique and compared it to both full multi-class SVM and K-Nearest Neighbor (KNN) classifications. Our experimental study analyzed 57 slice sets from 13 mice, and yielded a 98.2% separation accuracy between healthy and low grade fibrotic subjects, and an overall accuracy of 84.2% for fibrosis grading. These results are better than the existing image-based methods which can only discriminate between healthy and high grade fibrosis subjects. With appropriate extensions, our method may be used for non-invasive classification and progression monitoring of liver fibrosis in human patients instead of more invasive approaches, such as biopsy or contrast-enhanced imaging.

A multi-characteristic based algorithm for classifying vegetation in a plateau area: Qinghai Lake watershed, northwestern China

NASA Astrophysics Data System (ADS)

Ma, Weiwei; Gong, Cailan; Hu, Yong; Li, Long; Meng, Peng

2015-10-01

Remote sensing technology has been broadly recognized for its convenience and efficiency in mapping vegetation, particularly in high-altitude and inaccessible areas where there are lack of in-situ observations. In this study, Landsat Thematic Mapper (TM) images and Chinese environmental mitigation satellite CCD sensor (HJ-1 CCD) images, both of which are at 30m spatial resolution were employed for identifying and monitoring of vegetation types in a area of Western China——Qinghai Lake Watershed(QHLW). A decision classification tree (DCT) algorithm using multi-characteristic including seasonal TM/HJ-1 CCD time series data combined with digital elevation models (DEMs) dataset, and a supervised maximum likelihood classification (MLC) algorithm with single-data TM image were applied vegetation classification. Accuracy of the two algorithms was assessed using field observation data. Based on produced vegetation classification maps, it was found that the DCT using multi-season data and geomorphologic parameters was superior to the MLC algorithm using single-data image, improving the overall accuracy by 11.86% at second class level and significantly reducing the "salt and pepper" noise. The DCT algorithm applied to TM /HJ-1 CCD time series data geomorphologic parameters appeared as a valuable and reliable tool for monitoring vegetation at first class level (5 vegetation classes) and second class level(8 vegetation subclasses). The DCT algorithm using multi-characteristic might provide a theoretical basis and general approach to automatic extraction of vegetation types from remote sensing imagery over plateau areas.

Confidence level estimation in multi-target classification problems

NASA Astrophysics Data System (ADS)

Chang, Shi; Isaacs, Jason; Fu, Bo; Shin, Jaejeong; Zhu, Pingping; Ferrari, Silvia

2018-04-01

This paper presents an approach for estimating the confidence level in automatic multi-target classification performed by an imaging sensor on an unmanned vehicle. An automatic target recognition algorithm comprised of a deep convolutional neural network in series with a support vector machine classifier detects and classifies targets based on the image matrix. The joint posterior probability mass function of target class, features, and classification estimates is learned from labeled data, and recursively updated as additional images become available. Based on the learned joint probability mass function, the approach presented in this paper predicts the expected confidence level of future target classifications, prior to obtaining new images. The proposed approach is tested with a set of simulated sonar image data. The numerical results show that the estimated confidence level provides a close approximation to the actual confidence level value determined a posteriori, i.e. after the new image is obtained by the on-board sensor. Therefore, the expected confidence level function presented in this paper can be used to adaptively plan the path of the unmanned vehicle so as to optimize the expected confidence levels and ensure that all targets are classified with satisfactory confidence after the path is executed.

Temporal optimisation of image acquisition for land cover classification with Random Forest and MODIS time-series

NASA Astrophysics Data System (ADS)

Nitze, Ingmar; Barrett, Brian; Cawkwell, Fiona

2015-02-01

The analysis and classification of land cover is one of the principal applications in terrestrial remote sensing. Due to the seasonal variability of different vegetation types and land surface characteristics, the ability to discriminate land cover types changes over time. Multi-temporal classification can help to improve the classification accuracies, but different constraints, such as financial restrictions or atmospheric conditions, may impede their application. The optimisation of image acquisition timing and frequencies can help to increase the effectiveness of the classification process. For this purpose, the Feature Importance (FI) measure of the state-of-the art machine learning method Random Forest was used to determine the optimal image acquisition periods for a general (Grassland, Forest, Water, Settlement, Peatland) and Grassland specific (Improved Grassland, Semi-Improved Grassland) land cover classification in central Ireland based on a 9-year time-series of MODIS Terra 16 day composite data (MOD13Q1). Feature Importances for each acquisition period of the Enhanced Vegetation Index (EVI) and Normalised Difference Vegetation Index (NDVI) were calculated for both classification scenarios. In the general land cover classification, the months December and January showed the highest, and July and August the lowest separability for both VIs over the entire nine-year period. This temporal separability was reflected in the classification accuracies, where the optimal choice of image dates outperformed the worst image date by 13% using NDVI and 5% using EVI on a mono-temporal analysis. With the addition of the next best image periods to the data input the classification accuracies converged quickly to their limit at around 8-10 images. The binary classification schemes, using two classes only, showed a stronger seasonal dependency with a higher intra-annual, but lower inter-annual variation. Nonetheless anomalous weather conditions, such as the cold winter of 2009/2010 can alter the temporal separability pattern significantly. Due to the extensive use of the NDVI for land cover discrimination, the findings of this study should be transferrable to data from other optical sensors with a higher spatial resolution. However, the high impact of outliers from the general climatic pattern highlights the limitation of spatial transferability to locations with different climatic and land cover conditions. The use of high-temporal, moderate resolution data such as MODIS in conjunction with machine-learning techniques proved to be a good base for the prediction of image acquisition timing for optimal land cover classification results.

HCP: A Flexible CNN Framework for Multi-label Image Classification.

PubMed

Wei, Yunchao; Xia, Wei; Lin, Min; Huang, Junshi; Ni, Bingbing; Dong, Jian; Zhao, Yao; Yan, Shuicheng

2015-10-26

Convolutional Neural Network (CNN) has demonstrated promising performance in single-label image classification tasks. However, how CNN best copes with multi-label images still remains an open problem, mainly due to the complex underlying object layouts and insufficient multi-label training images. In this work, we propose a flexible deep CNN infrastructure, called Hypotheses-CNN-Pooling (HCP), where an arbitrary number of object segment hypotheses are taken as the inputs, then a shared CNN is connected with each hypothesis, and finally the CNN output results from different hypotheses are aggregated with max pooling to produce the ultimate multi-label predictions. Some unique characteristics of this flexible deep CNN infrastructure include: 1) no ground-truth bounding box information is required for training; 2) the whole HCP infrastructure is robust to possibly noisy and/or redundant hypotheses; 3) the shared CNN is flexible and can be well pre-trained with a large-scale single-label image dataset, e.g., ImageNet; and 4) it may naturally output multi-label prediction results. Experimental results on Pascal VOC 2007 and VOC 2012 multi-label image datasets well demonstrate the superiority of the proposed HCP infrastructure over other state-of-the-arts. In particular, the mAP reaches 90.5% by HCP only and 93.2% after the fusion with our complementary result in [44] based on hand-crafted features on the VOC 2012 dataset.

Steganalysis feature improvement using expectation maximization

NASA Astrophysics Data System (ADS)

Rodriguez, Benjamin M.; Peterson, Gilbert L.; Agaian, Sos S.

2007-04-01

Images and data files provide an excellent opportunity for concealing illegal or clandestine material. Currently, there are over 250 different tools which embed data into an image without causing noticeable changes to the image. From a forensics perspective, when a system is confiscated or an image of a system is generated the investigator needs a tool that can scan and accurately identify files suspected of containing malicious information. The identification process is termed the steganalysis problem which focuses on both blind identification, in which only normal images are available for training, and multi-class identification, in which both the clean and stego images at several embedding rates are available for training. In this paper an investigation of a clustering and classification technique (Expectation Maximization with mixture models) is used to determine if a digital image contains hidden information. The steganalysis problem is for both anomaly detection and multi-class detection. The various clusters represent clean images and stego images with between 1% and 10% embedding percentage. Based on the results it is concluded that the EM classification technique is highly suitable for both blind detection and the multi-class problem.

Invasive species change detection using artificial neural networks and CASI hyperspectral imagery

USDA-ARS?s Scientific Manuscript database

For monitoring and controlling the extent and intensity of an invasive species, a direct multi-date image classification method was applied in invasive species (saltcedar) change detection in the study area of Lovelock, Nevada. With multi-date Compact Airborne Spectrographic Imager (CASI) hyperspec...

Time-Resolved and Spectroscopic Three-Dimensional Optical Breast Tomography

DTIC Science & Technology

2009-03-01

polarization sensitive imaging 16. SECURITY CLASSIFICATION OF: 17. LIMITATION OF ABSTRACT 18. NUMBER OF PAGES 19a. NAME OF RESPONSIBLE PERSON R. R...project; • Development of a near-infrared center of intensity time gated imaging approach; and • Polarization sensitive imaging. We provide an...spectroscopic imaging arrangement, and a multi-source illumination and multi- detector signal acquisition arrangement. 5 5.1.1. Time-resolved transillumination

Automatic classification for mammogram backgrounds based on bi-rads complexity definition and on a multi content analysis framework

NASA Astrophysics Data System (ADS)

Wu, Jie; Besnehard, Quentin; Marchessoux, Cédric

2011-03-01

Clinical studies for the validation of new medical imaging devices require hundreds of images. An important step in creating and tuning the study protocol is the classification of images into "difficult" and "easy" cases. This consists of classifying the image based on features like the complexity of the background, the visibility of the disease (lesions). Therefore, an automatic medical background classification tool for mammograms would help for such clinical studies. This classification tool is based on a multi-content analysis framework (MCA) which was firstly developed to recognize image content of computer screen shots. With the implementation of new texture features and a defined breast density scale, the MCA framework is able to automatically classify digital mammograms with a satisfying accuracy. BI-RADS (Breast Imaging Reporting Data System) density scale is used for grouping the mammograms, which standardizes the mammography reporting terminology and assessment and recommendation categories. Selected features are input into a decision tree classification scheme in MCA framework, which is the so called "weak classifier" (any classifier with a global error rate below 50%). With the AdaBoost iteration algorithm, these "weak classifiers" are combined into a "strong classifier" (a classifier with a low global error rate) for classifying one category. The results of classification for one "strong classifier" show the good accuracy with the high true positive rates. For the four categories the results are: TP=90.38%, TN=67.88%, FP=32.12% and FN =9.62%.

A Wavelet Polarization Decomposition Net Model for Polarimetric SAR Image Classification

NASA Astrophysics Data System (ADS)

He, Chu; Ou, Dan; Yang, Teng; Wu, Kun; Liao, Mingsheng; Chen, Erxue

2014-11-01

In this paper, a deep model based on wavelet texture has been proposed for Polarimetric Synthetic Aperture Radar (PolSAR) image classification inspired by recent successful deep learning method. Our model is supposed to learn powerful and informative representations to improve the generalization ability for the complex scene classification tasks. Given the influence of speckle noise in Polarimetric SAR image, wavelet polarization decomposition is applied first to obtain basic and discriminative texture features which are then embedded into a Deep Neural Network (DNN) in order to compose multi-layer higher representations. We demonstrate that the model can produce a powerful representation which can capture some untraceable information from Polarimetric SAR images and show a promising achievement in comparison with other traditional SAR image classification methods for the SAR image dataset.

Computer-aided diagnosis (CAD) for colonoscopy

NASA Astrophysics Data System (ADS)

Gu, Jia; Poirson, Allen

2007-03-01

Colorectal cancer is the second leading cause of cancer deaths, and ranks third for new cancer cases and cancer mortality for both men and women. However, its death rate can be dramatically reduced by appropriate treatment when early detection is available. The purpose of colonoscopy is to identify and assess the severity of lesions, which may be flat or protruding. Due to the subjective nature of the examination, colonoscopic proficiency is highly variable and dependent upon the colonoscopist's knowledge and experience. An automated image processing system providing an objective, rapid, and inexpensive analysis of video from a standard colonoscope could provide a valuable tool for screening and diagnosis. In this paper, we present the design, functionality and preliminary results of its Computer-Aided-Diagnosis (CAD) system for colonoscopy - ColonoCAD TM. ColonoCAD is a complex multi-sensor, multi-data and multi-algorithm image processing system, incorporating data management and visualization, video quality assessment and enhancement, calibration, multiple view based reconstruction, feature extraction and classification. As this is a new field in medical image processing, our hope is that this paper will provide the framework to encourage and facilitate collaboration and discussion between industry, academia, and medical practitioners.

Random-Forest Classification of High-Resolution Remote Sensing Images and Ndsm Over Urban Areas

NASA Astrophysics Data System (ADS)

Sun, X. F.; Lin, X. G.

2017-09-01

As an intermediate step between raw remote sensing data and digital urban maps, remote sensing data classification has been a challenging and long-standing research problem in the community of remote sensing. In this work, an effective classification method is proposed for classifying high-resolution remote sensing data over urban areas. Starting from high resolution multi-spectral images and 3D geometry data, our method proceeds in three main stages: feature extraction, classification, and classified result refinement. First, we extract color, vegetation index and texture features from the multi-spectral image and compute the height, elevation texture and differential morphological profile (DMP) features from the 3D geometry data. Then in the classification stage, multiple random forest (RF) classifiers are trained separately, then combined to form a RF ensemble to estimate each sample's category probabilities. Finally the probabilities along with the feature importance indicator outputted by RF ensemble are used to construct a fully connected conditional random field (FCCRF) graph model, by which the classification results are refined through mean-field based statistical inference. Experiments on the ISPRS Semantic Labeling Contest dataset show that our proposed 3-stage method achieves 86.9% overall accuracy on the test data.

Detecting Water Bodies in LANDSAT8 Oli Image Using Deep Learning

NASA Astrophysics Data System (ADS)

Jiang, W.; He, G.; Long, T.; Ni, Y.

2018-04-01

Water body identifying is critical to climate change, water resources, ecosystem service and hydrological cycle. Multi-layer perceptron(MLP) is the popular and classic method under deep learning framework to detect target and classify image. Therefore, this study adopts this method to identify the water body of Landsat8. To compare the performance of classification, the maximum likelihood and water index are employed for each study area. The classification results are evaluated from accuracy indices and local comparison. Evaluation result shows that multi-layer perceptron(MLP) can achieve better performance than the other two methods. Moreover, the thin water also can be clearly identified by the multi-layer perceptron. The proposed method has the application potential in mapping global scale surface water with multi-source medium-high resolution satellite data.

Super-resolution mapping using multi-viewing CHRIS/PROBA data

NASA Astrophysics Data System (ADS)

Dwivedi, Manish; Kumar, Vinay

2016-04-01

High-spatial resolution Remote Sensing (RS) data provides detailed information which ensures high-definition visual image analysis of earth surface features. These data sets also support improved information extraction capabilities at a fine scale. In order to improve the spatial resolution of coarser resolution RS data, the Super Resolution Reconstruction (SRR) technique has become widely acknowledged which focused on multi-angular image sequences. In this study multi-angle CHRIS/PROBA data of Kutch area is used for SR image reconstruction to enhance the spatial resolution from 18 m to 6m in the hope to obtain a better land cover classification. Various SR approaches like Projection onto Convex Sets (POCS), Robust, Iterative Back Projection (IBP), Non-Uniform Interpolation and Structure-Adaptive Normalized Convolution (SANC) chosen for this study. Subjective assessment through visual interpretation shows substantial improvement in land cover details. Quantitative measures including peak signal to noise ratio and structural similarity are used for the evaluation of the image quality. It was observed that SANC SR technique using Vandewalle algorithm for the low resolution image registration outperformed the other techniques. After that SVM based classifier is used for the classification of SRR and data resampled to 6m spatial resolution using bi-cubic interpolation. A comparative analysis is carried out between classified data of bicubic interpolated and SR derived images of CHRIS/PROBA and SR derived classified data have shown a significant improvement of 10-12% in the overall accuracy. The results demonstrated that SR methods is able to improve spatial detail of multi-angle images as well as the classification accuracy.

Integrated change detection and temporal trajectory analysis of coastal wetlands using high spatial resolution Korean Multi-Purpose Satellite series imagery

NASA Astrophysics Data System (ADS)

Nguyen, Hoang Hai; Tran, Hien; Sunwoo, Wooyeon; Yi, Jong-hyuk; Kim, Dongkyun; Choi, Minha

2017-04-01

A series of multispectral high-resolution Korean Multi-Purpose Satellite (KOMPSAT) images was used to detect the geographical changes in four different tidal flats between the Yellow Sea and the west coast of South Korea. The method of unsupervised classification was used to generate a series of land use/land cover (LULC) maps from satellite images, which were then used as input for temporal trajectory analysis to detect the temporal change of coastal wetlands and its association with natural and anthropogenic activities. The accurately classified LULC maps of KOMPSAT images, with overall accuracy ranging from 83.34% to 95.43%, indicate that these multispectral high-resolution satellite data are highly applicable to the generation of high-quality thematic maps for extracting wetlands. The result of the trajectory analysis showed that, while the variation of the tidal flats in the Gyeonggi and Jeollabuk provinces was well correlated with the regular tidal regimes, the reductive trajectory of the wetland areas belonging to the Saemangeum province was caused by a high degree of human-induced activities including large reclamation and urbanization. The conservation of the Jeungdo Wetland Protected Area in the Jeollanam province revealed that effective social and environmental policies could help in protecting coastal wetlands from degradation.

Determination of optimum "multi-channel surface wave method" field parameters.

DOT National Transportation Integrated Search

2012-12-01

Multi-channel surface wave methods (especially the multi-channel analyses of surface wave method; MASW) are routinely used to : determine the shear-wave velocity of the subsurface to depths of 100 feet for site classification purposes. Users are awar...

Classification of Urban Feature from Unmanned Aerial Vehicle Images Using Gasvm Integration and Multi-Scale Segmentation

NASA Astrophysics Data System (ADS)

Modiri, M.; Salehabadi, A.; Mohebbi, M.; Hashemi, A. M.; Masumi, M.

2015-12-01

The use of UAV in the application of photogrammetry to obtain cover images and achieve the main objectives of the photogrammetric mapping has been a boom in the region. The images taken from REGGIOLO region in the province of, Italy Reggio -Emilia by UAV with non-metric camera Canon Ixus and with an average height of 139.42 meters were used to classify urban feature. Using the software provided SURE and cover images of the study area, to produce dense point cloud, DSM and Artvqvtv spatial resolution of 10 cm was prepared. DTM area using Adaptive TIN filtering algorithm was developed. NDSM area was prepared with using the difference between DSM and DTM and a separate features in the image stack. In order to extract features, using simultaneous occurrence matrix features mean, variance, homogeneity, contrast, dissimilarity, entropy, second moment, and correlation for each of the RGB band image was used Orthophoto area. Classes used to classify urban problems, including buildings, trees and tall vegetation, grass and vegetation short, paved road and is impervious surfaces. Class consists of impervious surfaces such as pavement conditions, the cement, the car, the roof is stored. In order to pixel-based classification and selection of optimal features of classification was GASVM pixel basis. In order to achieve the classification results with higher accuracy and spectral composition informations, texture, and shape conceptual image featureOrthophoto area was fencing. The segmentation of multi-scale segmentation method was used.it belonged class. Search results using the proposed classification of urban feature, suggests the suitability of this method of classification complications UAV is a city using images. The overall accuracy and kappa coefficient method proposed in this study, respectively, 47/93% and 84/91% was.

Application of Sensor Fusion to Improve Uav Image Classification

NASA Astrophysics Data System (ADS)

Jabari, S.; Fathollahi, F.; Zhang, Y.

2017-08-01

Image classification is one of the most important tasks of remote sensing projects including the ones that are based on using UAV images. Improving the quality of UAV images directly affects the classification results and can save a huge amount of time and effort in this area. In this study, we show that sensor fusion can improve image quality which results in increasing the accuracy of image classification. Here, we tested two sensor fusion configurations by using a Panchromatic (Pan) camera along with either a colour camera or a four-band multi-spectral (MS) camera. We use the Pan camera to benefit from its higher sensitivity and the colour or MS camera to benefit from its spectral properties. The resulting images are then compared to the ones acquired by a high resolution single Bayer-pattern colour camera (here referred to as HRC). We assessed the quality of the output images by performing image classification tests. The outputs prove that the proposed sensor fusion configurations can achieve higher accuracies compared to the images of the single Bayer-pattern colour camera. Therefore, incorporating a Pan camera on-board in the UAV missions and performing image fusion can help achieving higher quality images and accordingly higher accuracy classification results.

Detection of Lettuce Discoloration Using Hyperspectral Reflectance Imaging

PubMed Central

Mo, Changyeun; Kim, Giyoung; Lim, Jongguk; Kim, Moon S.; Cho, Hyunjeong; Cho, Byoung-Kwan

2015-01-01

Rapid visible/near-infrared (VNIR) hyperspectral imaging methods, employing both a single waveband algorithm and multi-spectral algorithms, were developed in order to discrimination between sound and discolored lettuce. Reflectance spectra for sound and discolored lettuce surfaces were extracted from hyperspectral reflectance images obtained in the 400–1000 nm wavelength range. The optimal wavebands for discriminating between discolored and sound lettuce surfaces were determined using one-way analysis of variance. Multi-spectral imaging algorithms developed using ratio and subtraction functions resulted in enhanced classification accuracy of above 99.9% for discolored and sound areas on both adaxial and abaxial lettuce surfaces. Ratio imaging (RI) and subtraction imaging (SI) algorithms at wavelengths of 552/701 nm and 557–701 nm, respectively, exhibited better classification performances compared to results obtained for all possible two-waveband combinations. These results suggest that hyperspectral reflectance imaging techniques can potentially be used to discriminate between discolored and sound fresh-cut lettuce. PMID:26610510

Detection of Lettuce Discoloration Using Hyperspectral Reflectance Imaging.

PubMed

Mo, Changyeun; Kim, Giyoung; Lim, Jongguk; Kim, Moon S; Cho, Hyunjeong; Cho, Byoung-Kwan

2015-11-20

Rapid visible/near-infrared (VNIR) hyperspectral imaging methods, employing both a single waveband algorithm and multi-spectral algorithms, were developed in order to discrimination between sound and discolored lettuce. Reflectance spectra for sound and discolored lettuce surfaces were extracted from hyperspectral reflectance images obtained in the 400-1000 nm wavelength range. The optimal wavebands for discriminating between discolored and sound lettuce surfaces were determined using one-way analysis of variance. Multi-spectral imaging algorithms developed using ratio and subtraction functions resulted in enhanced classification accuracy of above 99.9% for discolored and sound areas on both adaxial and abaxial lettuce surfaces. Ratio imaging (RI) and subtraction imaging (SI) algorithms at wavelengths of 552/701 nm and 557-701 nm, respectively, exhibited better classification performances compared to results obtained for all possible two-waveband combinations. These results suggest that hyperspectral reflectance imaging techniques can potentially be used to discriminate between discolored and sound fresh-cut lettuce.

Using classification and NDVI differencing methods for monitoring sparse vegetation coverage: a case study of saltcedar in Nevada, USA.

USDA-ARS?s Scientific Manuscript database

A change detection experiment for an invasive species, saltcedar, near Lovelock, Nevada, was conducted with multi-date Compact Airborne Spectrographic Imager (CASI) hyperspectral datasets. Classification and NDVI differencing change detection methods were tested, In the classification strategy, a p...

Large Scale Crop Classification in Ukraine using Multi-temporal Landsat-8 Images with Missing Data

NASA Astrophysics Data System (ADS)

Kussul, N.; Skakun, S.; Shelestov, A.; Lavreniuk, M. S.

2014-12-01

At present, there are no globally available Earth observation (EO) derived products on crop maps. This issue is being addressed within the Sentinel-2 for Agriculture initiative where a number of test sites (including from JECAM) participate to provide coherent protocols and best practices for various global agriculture systems, and subsequently crop maps from Sentinel-2. One of the problems in dealing with optical images for large territories (more than 10,000 sq. km) is the presence of clouds and shadows that result in having missing values in data sets. In this abstract, a new approach to classification of multi-temporal optical satellite imagery with missing data due to clouds and shadows is proposed. First, self-organizing Kohonen maps (SOMs) are used to restore missing pixel values in a time series of satellite imagery. SOMs are trained for each spectral band separately using non-missing values. Missing values are restored through a special procedure that substitutes input sample's missing components with neuron's weight coefficients. After missing data restoration, a supervised classification is performed for multi-temporal satellite images. For this, an ensemble of neural networks, in particular multilayer perceptrons (MLPs), is proposed. Ensembling of neural networks is done by the technique of average committee, i.e. to calculate the average class probability over classifiers and select the class with the highest average posterior probability for the given input sample. The proposed approach is applied for large scale crop classification using multi temporal Landsat-8 images for the JECAM test site in Ukraine [1-2]. It is shown that ensemble of MLPs provides better performance than a single neural network in terms of overall classification accuracy and kappa coefficient. The obtained classification map is also validated through estimated crop and forest areas and comparison to official statistics. 1. A.Yu. Shelestov et al., "Geospatial information system for agricultural monitoring," Cybernetics Syst. Anal., vol. 49, no. 1, pp. 124-132, 2013. 2. J. Gallego et al., "Efficiency Assessment of Different Approaches to Crop Classification Based on Satellite and Ground Observations," J. Autom. Inform. Scie., vol. 44, no. 5, pp. 67-80, 2012.

Camouflage target reconnaissance based on hyperspectral imaging technology

NASA Astrophysics Data System (ADS)

Hua, Wenshen; Guo, Tong; Liu, Xun

2015-08-01

Efficient camouflaged target reconnaissance technology makes great influence on modern warfare. Hyperspectral images can provide large spectral range and high spectral resolution, which are invaluable in discriminating between camouflaged targets and backgrounds. Hyperspectral target detection and classification technology are utilized to achieve single class and multi-class camouflaged targets reconnaissance respectively. Constrained energy minimization (CEM), a widely used algorithm in hyperspectral target detection, is employed to achieve one class camouflage target reconnaissance. Then, support vector machine (SVM), a classification method, is proposed to achieve multi-class camouflage target reconnaissance. Experiments have been conducted to demonstrate the efficiency of the proposed method.

Going Deeper With Contextual CNN for Hyperspectral Image Classification.

PubMed

Lee, Hyungtae; Kwon, Heesung

2017-10-01

In this paper, we describe a novel deep convolutional neural network (CNN) that is deeper and wider than other existing deep networks for hyperspectral image classification. Unlike current state-of-the-art approaches in CNN-based hyperspectral image classification, the proposed network, called contextual deep CNN, can optimally explore local contextual interactions by jointly exploiting local spatio-spectral relationships of neighboring individual pixel vectors. The joint exploitation of the spatio-spectral information is achieved by a multi-scale convolutional filter bank used as an initial component of the proposed CNN pipeline. The initial spatial and spectral feature maps obtained from the multi-scale filter bank are then combined together to form a joint spatio-spectral feature map. The joint feature map representing rich spectral and spatial properties of the hyperspectral image is then fed through a fully convolutional network that eventually predicts the corresponding label of each pixel vector. The proposed approach is tested on three benchmark data sets: the Indian Pines data set, the Salinas data set, and the University of Pavia data set. Performance comparison shows enhanced classification performance of the proposed approach over the current state-of-the-art on the three data sets.

Automated retinal vessel type classification in color fundus images

NASA Astrophysics Data System (ADS)

Yu, H.; Barriga, S.; Agurto, C.; Nemeth, S.; Bauman, W.; Soliz, P.

2013-02-01

Automated retinal vessel type classification is an essential first step toward machine-based quantitative measurement of various vessel topological parameters and identifying vessel abnormalities and alternations in cardiovascular disease risk analysis. This paper presents a new and accurate automatic artery and vein classification method developed for arteriolar-to-venular width ratio (AVR) and artery and vein tortuosity measurements in regions of interest (ROI) of 1.5 and 2.5 optic disc diameters from the disc center, respectively. This method includes illumination normalization, automatic optic disc detection and retinal vessel segmentation, feature extraction, and a partial least squares (PLS) classification. Normalized multi-color information, color variation, and multi-scale morphological features are extracted on each vessel segment. We trained the algorithm on a set of 51 color fundus images using manually marked arteries and veins. We tested the proposed method in a previously unseen test data set consisting of 42 images. We obtained an area under the ROC curve (AUC) of 93.7% in the ROI of AVR measurement and 91.5% of AUC in the ROI of tortuosity measurement. The proposed AV classification method has the potential to assist automatic cardiovascular disease early detection and risk analysis.

Multi-source remotely sensed data fusion for improving land cover classification

NASA Astrophysics Data System (ADS)

Chen, Bin; Huang, Bo; Xu, Bing

2017-02-01

Although many advances have been made in past decades, land cover classification of fine-resolution remotely sensed (RS) data integrating multiple temporal, angular, and spectral features remains limited, and the contribution of different RS features to land cover classification accuracy remains uncertain. We proposed to improve land cover classification accuracy by integrating multi-source RS features through data fusion. We further investigated the effect of different RS features on classification performance. The results of fusing Landsat-8 Operational Land Imager (OLI) data with Moderate Resolution Imaging Spectroradiometer (MODIS), China Environment 1A series (HJ-1A), and Advanced Spaceborne Thermal Emission and Reflection (ASTER) digital elevation model (DEM) data, showed that the fused data integrating temporal, spectral, angular, and topographic features achieved better land cover classification accuracy than the original RS data. Compared with the topographic feature, the temporal and angular features extracted from the fused data played more important roles in classification performance, especially those temporal features containing abundant vegetation growth information, which markedly increased the overall classification accuracy. In addition, the multispectral and hyperspectral fusion successfully discriminated detailed forest types. Our study provides a straightforward strategy for hierarchical land cover classification by making full use of available RS data. All of these methods and findings could be useful for land cover classification at both regional and global scales.

Multi-Level and Multi-Scale Feature Aggregation Using Pretrained Convolutional Neural Networks for Music Auto-Tagging

NASA Astrophysics Data System (ADS)

Lee, Jongpil; Nam, Juhan

2017-08-01

Music auto-tagging is often handled in a similar manner to image classification by regarding the 2D audio spectrogram as image data. However, music auto-tagging is distinguished from image classification in that the tags are highly diverse and have different levels of abstractions. Considering this issue, we propose a convolutional neural networks (CNN)-based architecture that embraces multi-level and multi-scaled features. The architecture is trained in three steps. First, we conduct supervised feature learning to capture local audio features using a set of CNNs with different input sizes. Second, we extract audio features from each layer of the pre-trained convolutional networks separately and aggregate them altogether given a long audio clip. Finally, we put them into fully-connected networks and make final predictions of the tags. Our experiments show that using the combination of multi-level and multi-scale features is highly effective in music auto-tagging and the proposed method outperforms previous state-of-the-arts on the MagnaTagATune dataset and the Million Song Dataset. We further show that the proposed architecture is useful in transfer learning.

Classification of breast MRI lesions using small-size training sets: comparison of deep learning approaches

NASA Astrophysics Data System (ADS)

Amit, Guy; Ben-Ari, Rami; Hadad, Omer; Monovich, Einat; Granot, Noa; Hashoul, Sharbell

2017-03-01

Diagnostic interpretation of breast MRI studies requires meticulous work and a high level of expertise. Computerized algorithms can assist radiologists by automatically characterizing the detected lesions. Deep learning approaches have shown promising results in natural image classification, but their applicability to medical imaging is limited by the shortage of large annotated training sets. In this work, we address automatic classification of breast MRI lesions using two different deep learning approaches. We propose a novel image representation for dynamic contrast enhanced (DCE) breast MRI lesions, which combines the morphological and kinetics information in a single multi-channel image. We compare two classification approaches for discriminating between benign and malignant lesions: training a designated convolutional neural network and using a pre-trained deep network to extract features for a shallow classifier. The domain-specific trained network provided higher classification accuracy, compared to the pre-trained model, with an area under the ROC curve of 0.91 versus 0.81, and an accuracy of 0.83 versus 0.71. Similar accuracy was achieved in classifying benign lesions, malignant lesions, and normal tissue images. The trained network was able to improve accuracy by using the multi-channel image representation, and was more robust to reductions in the size of the training set. A small-size convolutional neural network can learn to accurately classify findings in medical images using only a few hundred images from a few dozen patients. With sufficient data augmentation, such a network can be trained to outperform a pre-trained out-of-domain classifier. Developing domain-specific deep-learning models for medical imaging can facilitate technological advancements in computer-aided diagnosis.

Automated unsupervised multi-parametric classification of adipose tissue depots in skeletal muscle

PubMed Central

Valentinitsch, Alexander; Karampinos, Dimitrios C.; Alizai, Hamza; Subburaj, Karupppasamy; Kumar, Deepak; Link, Thomas M.; Majumdar, Sharmila

2012-01-01

Purpose To introduce and validate an automated unsupervised multi-parametric method for segmentation of the subcutaneous fat and muscle regions in order to determine subcutaneous adipose tissue (SAT) and intermuscular adipose tissue (IMAT) areas based on data from a quantitative chemical shift-based water-fat separation approach. Materials and Methods Unsupervised standard k-means clustering was employed to define sets of similar features (k = 2) within the whole multi-modal image after the water-fat separation. The automated image processing chain was composed of three primary stages including tissue, muscle and bone region segmentation. The algorithm was applied on calf and thigh datasets to compute SAT and IMAT areas and was compared to a manual segmentation. Results The IMAT area using the automatic segmentation had excellent agreement with the IMAT area using the manual segmentation for all the cases in the thigh (R2: 0.96) and for cases with up to moderate IMAT area in the calf (R2: 0.92). The group with the highest grade of muscle fat infiltration in the calf had the highest error in the inner SAT contour calculation. Conclusion The proposed multi-parametric segmentation approach combined with quantitative water-fat imaging provides an accurate and reliable method for an automated calculation of the SAT and IMAT areas reducing considerably the total post-processing time. PMID:23097409

Products recognition on shop-racks from local scale-invariant features

NASA Astrophysics Data System (ADS)

Zawistowski, Jacek; Kurzejamski, Grzegorz; Garbat, Piotr; Naruniec, Jacek

2016-04-01

This paper presents a system designed for the multi-object detection purposes and adjusted for the application of product search on the market shelves. System uses well known binary keypoint detection algorithms for finding characteristic points in the image. One of the main idea is object recognition based on Implicit Shape Model method. Authors of the article proposed many improvements of the algorithm. Originally fiducial points are matched with a very simple function. This leads to the limitations in the number of objects parts being success- fully separated, while various methods of classification may be validated in order to achieve higher performance. Such an extension implies research on training procedure able to deal with many objects categories. Proposed solution opens a new possibilities for many algorithms demanding fast and robust multi-object recognition.

Multi-material classification of dry recyclables from municipal solid waste based on thermal imaging.

PubMed

Gundupalli, Sathish Paulraj; Hait, Subrata; Thakur, Atul

2017-12-01

There has been a significant rise in municipal solid waste (MSW) generation in the last few decades due to rapid urbanization and industrialization. Due to the lack of source segregation practice, a need for automated segregation of recyclables from MSW exists in the developing countries. This paper reports a thermal imaging based system for classifying useful recyclables from simulated MSW sample. Experimental results have demonstrated the possibility to use thermal imaging technique for classification and a robotic system for sorting of recyclables in a single process step. The reported classification system yields an accuracy in the range of 85-96% and is comparable with the existing single-material recyclable classification techniques. We believe that the reported thermal imaging based system can emerge as a viable and inexpensive large-scale classification-cum-sorting technology in recycling plants for processing MSW in developing countries. Copyright © 2017 Elsevier Ltd. All rights reserved.

Multi-temporal and multi-source remote sensing image classification by nonlinear relative normalization

NASA Astrophysics Data System (ADS)

Tuia, Devis; Marcos, Diego; Camps-Valls, Gustau

2016-10-01

Remote sensing image classification exploiting multiple sensors is a very challenging problem: data from different modalities are affected by spectral distortions and mis-alignments of all kinds, and this hampers re-using models built for one image to be used successfully in other scenes. In order to adapt and transfer models across image acquisitions, one must be able to cope with datasets that are not co-registered, acquired under different illumination and atmospheric conditions, by different sensors, and with scarce ground references. Traditionally, methods based on histogram matching have been used. However, they fail when densities have very different shapes or when there is no corresponding band to be matched between the images. An alternative builds upon manifold alignment. Manifold alignment performs a multidimensional relative normalization of the data prior to product generation that can cope with data of different dimensionality (e.g. different number of bands) and possibly unpaired examples. Aligning data distributions is an appealing strategy, since it allows to provide data spaces that are more similar to each other, regardless of the subsequent use of the transformed data. In this paper, we study a methodology that aligns data from different domains in a nonlinear way through kernelization. We introduce the Kernel Manifold Alignment (KEMA) method, which provides a flexible and discriminative projection map, exploits only a few labeled samples (or semantic ties) in each domain, and reduces to solving a generalized eigenvalue problem. We successfully test KEMA in multi-temporal and multi-source very high resolution classification tasks, as well as on the task of making a model invariant to shadowing for hyperspectral imaging.

Five-class differential diagnostics of neurodegenerative diseases using random undersampling boosting.

PubMed

Tong, Tong; Ledig, Christian; Guerrero, Ricardo; Schuh, Andreas; Koikkalainen, Juha; Tolonen, Antti; Rhodius, Hanneke; Barkhof, Frederik; Tijms, Betty; Lemstra, Afina W; Soininen, Hilkka; Remes, Anne M; Waldemar, Gunhild; Hasselbalch, Steen; Mecocci, Patrizia; Baroni, Marta; Lötjönen, Jyrki; Flier, Wiesje van der; Rueckert, Daniel

2017-01-01

Differentiating between different types of neurodegenerative diseases is not only crucial in clinical practice when treatment decisions have to be made, but also has a significant potential for the enrichment of clinical trials. The purpose of this study is to develop a classification framework for distinguishing the four most common neurodegenerative diseases, including Alzheimer's disease, frontotemporal lobe degeneration, Dementia with Lewy bodies and vascular dementia, as well as patients with subjective memory complaints. Different biomarkers including features from images (volume features, region-wise grading features) and non-imaging features (CSF measures) were extracted for each subject. In clinical practice, the prevalence of different dementia types is imbalanced, posing challenges for learning an effective classification model. Therefore, we propose the use of the RUSBoost algorithm in order to train classifiers and to handle the class imbalance training problem. Furthermore, a multi-class feature selection method based on sparsity is integrated into the proposed framework to improve the classification performance. It also provides a way for investigating the importance of different features and regions. Using a dataset of 500 subjects, the proposed framework achieved a high accuracy of 75.2% with a balanced accuracy of 69.3% for the five-class classification using ten-fold cross validation, which is significantly better than the results using support vector machine or random forest, demonstrating the feasibility of the proposed framework to support clinical decision making.

Supervised pixel classification for segmenting geographic atrophy in fundus autofluorescene images

NASA Astrophysics Data System (ADS)

Hu, Zhihong; Medioni, Gerard G.; Hernandez, Matthias; Sadda, SriniVas R.

2014-03-01

Age-related macular degeneration (AMD) is the leading cause of blindness in people over the age of 65. Geographic atrophy (GA) is a manifestation of the advanced or late-stage of the AMD, which may result in severe vision loss and blindness. Techniques to rapidly and precisely detect and quantify GA lesions would appear to be of important value in advancing the understanding of the pathogenesis of GA and the management of GA progression. The purpose of this study is to develop an automated supervised pixel classification approach for segmenting GA including uni-focal and multi-focal patches in fundus autofluorescene (FAF) images. The image features include region wise intensity (mean and variance) measures, gray level co-occurrence matrix measures (angular second moment, entropy, and inverse difference moment), and Gaussian filter banks. A k-nearest-neighbor (k-NN) pixel classifier is applied to obtain a GA probability map, representing the likelihood that the image pixel belongs to GA. A voting binary iterative hole filling filter is then applied to fill in the small holes. Sixteen randomly chosen FAF images were obtained from sixteen subjects with GA. The algorithm-defined GA regions are compared with manual delineation performed by certified graders. Two-fold cross-validation is applied for the evaluation of the classification performance. The mean Dice similarity coefficients (DSC) between the algorithm- and manually-defined GA regions are 0.84 +/- 0.06 for one test and 0.83 +/- 0.07 for the other test and the area correlations between them are 0.99 (p < 0.05) and 0.94 (p < 0.05) respectively.

Accuracy of DSM based on digital aerial image matching. (Polish Title: Dokładność NMPT tworzonego metodą automatycznego dopasowania cyfrowych zdjęć lotniczych)

NASA Astrophysics Data System (ADS)

Kubalska, J. L.; Preuss, R.

2013-12-01

Digital Surface Models (DSM) are used in GIS data bases as single product more often. They are also necessary to create other products such as3D city models, true-ortho and object-oriented classification. This article presents results of DSM generation for classification of vegetation in urban areas. Source data allowed producing DSM with using of image matching method and ALS data. The creation of DSM from digital images, obtained by Ultra Cam-D digital Vexcel camera, was carried out in Match-T by INPHO. This program optimizes the configuration of images matching process, which ensures high accuracy and minimize gap areas. The analysis of the accuracy of this process was made by comparison of DSM generated in Match-T with DSM generated from ALS data. Because of further purpose of generated DSM it was decided to create model in GRID structure with cell size of 1 m. With this parameter differential model from both DSMs was also built that allowed determining the relative accuracy of the compared models. The analysis indicates that the generation of DSM with multi-image matching method is competitive for the same surface model creation from ALS data. Thus, when digital images with high overlap are available, the additional registration of ALS data seems to be unnecessary.

Large-scale optimization-based classification models in medicine and biology.

PubMed

Lee, Eva K

2007-06-01

We present novel optimization-based classification models that are general purpose and suitable for developing predictive rules for large heterogeneous biological and medical data sets. Our predictive model simultaneously incorporates (1) the ability to classify any number of distinct groups; (2) the ability to incorporate heterogeneous types of attributes as input; (3) a high-dimensional data transformation that eliminates noise and errors in biological data; (4) the ability to incorporate constraints to limit the rate of misclassification, and a reserved-judgment region that provides a safeguard against over-training (which tends to lead to high misclassification rates from the resulting predictive rule); and (5) successive multi-stage classification capability to handle data points placed in the reserved-judgment region. To illustrate the power and flexibility of the classification model and solution engine, and its multi-group prediction capability, application of the predictive model to a broad class of biological and medical problems is described. Applications include: the differential diagnosis of the type of erythemato-squamous diseases; predicting presence/absence of heart disease; genomic analysis and prediction of aberrant CpG island meythlation in human cancer; discriminant analysis of motility and morphology data in human lung carcinoma; prediction of ultrasonic cell disruption for drug delivery; identification of tumor shape and volume in treatment of sarcoma; discriminant analysis of biomarkers for prediction of early atherosclerois; fingerprinting of native and angiogenic microvascular networks for early diagnosis of diabetes, aging, macular degeneracy and tumor metastasis; prediction of protein localization sites; and pattern recognition of satellite images in classification of soil types. In all these applications, the predictive model yields correct classification rates ranging from 80 to 100%. This provides motivation for pursuing its use as a medical diagnostic, monitoring and decision-making tool.

The information extraction of Gannan citrus orchard based on the GF-1 remote sensing image

NASA Astrophysics Data System (ADS)

Wang, S.; Chen, Y. L.

2017-02-01

The production of Gannan oranges is the largest in China, which occupied an important part in the world. The extraction of citrus orchard quickly and effectively has important significance for fruit pathogen defense, fruit production and industrial planning. The traditional spectra extraction method of citrus orchard based on pixel has a lower classification accuracy, difficult to avoid the “pepper phenomenon”. In the influence of noise, the phenomenon that different spectrums of objects have the same spectrum is graveness. Taking Xunwu County citrus fruit planting area of Ganzhou as the research object, aiming at the disadvantage of the lower accuracy of the traditional method based on image element classification method, a decision tree classification method based on object-oriented rule set is proposed. Firstly, multi-scale segmentation is performed on the GF-1 remote sensing image data of the study area. Subsequently the sample objects are selected for statistical analysis of spectral features and geometric features. Finally, combined with the concept of decision tree classification, a variety of empirical values of single band threshold, NDVI, band combination and object geometry characteristics are used hierarchically to execute the information extraction of the research area, and multi-scale segmentation and hierarchical decision tree classification is implemented. The classification results are verified with the confusion matrix, and the overall Kappa index is 87.91%.

Multi-Pixel Simultaneous Classification of PolSAR Image Using Convolutional Neural Networks

PubMed Central

Xu, Xin; Gui, Rong; Pu, Fangling

2018-01-01

Convolutional neural networks (CNN) have achieved great success in the optical image processing field. Because of the excellent performance of CNN, more and more methods based on CNN are applied to polarimetric synthetic aperture radar (PolSAR) image classification. Most CNN-based PolSAR image classification methods can only classify one pixel each time. Because all the pixels of a PolSAR image are classified independently, the inherent interrelation of different land covers is ignored. We use a fixed-feature-size CNN (FFS-CNN) to classify all pixels in a patch simultaneously. The proposed method has several advantages. First, FFS-CNN can classify all the pixels in a small patch simultaneously. When classifying a whole PolSAR image, it is faster than common CNNs. Second, FFS-CNN is trained to learn the interrelation of different land covers in a patch, so it can use the interrelation of land covers to improve the classification results. The experiments of FFS-CNN are evaluated on a Chinese Gaofen-3 PolSAR image and other two real PolSAR images. Experiment results show that FFS-CNN is comparable with the state-of-the-art PolSAR image classification methods. PMID:29510499

Multi-Pixel Simultaneous Classification of PolSAR Image Using Convolutional Neural Networks.

PubMed

Wang, Lei; Xu, Xin; Dong, Hao; Gui, Rong; Pu, Fangling

2018-03-03

Convolutional neural networks (CNN) have achieved great success in the optical image processing field. Because of the excellent performance of CNN, more and more methods based on CNN are applied to polarimetric synthetic aperture radar (PolSAR) image classification. Most CNN-based PolSAR image classification methods can only classify one pixel each time. Because all the pixels of a PolSAR image are classified independently, the inherent interrelation of different land covers is ignored. We use a fixed-feature-size CNN (FFS-CNN) to classify all pixels in a patch simultaneously. The proposed method has several advantages. First, FFS-CNN can classify all the pixels in a small patch simultaneously. When classifying a whole PolSAR image, it is faster than common CNNs. Second, FFS-CNN is trained to learn the interrelation of different land covers in a patch, so it can use the interrelation of land covers to improve the classification results. The experiments of FFS-CNN are evaluated on a Chinese Gaofen-3 PolSAR image and other two real PolSAR images. Experiment results show that FFS-CNN is comparable with the state-of-the-art PolSAR image classification methods.

Lossless Compression of Classification-Map Data

NASA Technical Reports Server (NTRS)

Hua, Xie; Klimesh, Matthew

2009-01-01

A lossless image-data-compression algorithm intended specifically for application to classification-map data is based on prediction, context modeling, and entropy coding. The algorithm was formulated, in consideration of the differences between classification maps and ordinary images of natural scenes, so as to be capable of compressing classification- map data more effectively than do general-purpose image-data-compression algorithms. Classification maps are typically generated from remote-sensing images acquired by instruments aboard aircraft (see figure) and spacecraft. A classification map is a synthetic image that summarizes information derived from one or more original remote-sensing image(s) of a scene. The value assigned to each pixel in such a map is the index of a class that represents some type of content deduced from the original image data for example, a type of vegetation, a mineral, or a body of water at the corresponding location in the scene. When classification maps are generated onboard the aircraft or spacecraft, it is desirable to compress the classification-map data in order to reduce the volume of data that must be transmitted to a ground station.

Land classification of south-central Iowa from computer enhanced images

NASA Technical Reports Server (NTRS)

Lucas, J. R.; Taranik, J. V.; Billingsley, F. C. (Principal Investigator)

1977-01-01

The author has identified the following significant results. Enhanced LANDSAT imagery was most useful for land classification purposes, because these images could be photographically printed at large scales such as 1:63,360. The ability to see individual picture elements was no hindrance as long as general image patterns could be discerned. Low cost photographic processing systems for color printings have proved to be effective in the utilization of computer enhanced LANDSAT products for land classification purposes. The initial investment for this type of system was very low, ranging from $100 to $200 beyond a black and white photo lab. The technical expertise can be acquired from reading a color printing and processing manual.

Wishart Deep Stacking Network for Fast POLSAR Image Classification.

PubMed

Jiao, Licheng; Liu, Fang

2016-05-11

Inspired by the popular deep learning architecture - Deep Stacking Network (DSN), a specific deep model for polarimetric synthetic aperture radar (POLSAR) image classification is proposed in this paper, which is named as Wishart Deep Stacking Network (W-DSN). First of all, a fast implementation of Wishart distance is achieved by a special linear transformation, which speeds up the classification of POLSAR image and makes it possible to use this polarimetric information in the following Neural Network (NN). Then a single-hidden-layer neural network based on the fast Wishart distance is defined for POLSAR image classification, which is named as Wishart Network (WN) and improves the classification accuracy. Finally, a multi-layer neural network is formed by stacking WNs, which is in fact the proposed deep learning architecture W-DSN for POLSAR image classification and improves the classification accuracy further. In addition, the structure of WN can be expanded in a straightforward way by adding hidden units if necessary, as well as the structure of the W-DSN. As a preliminary exploration on formulating specific deep learning architecture for POLSAR image classification, the proposed methods may establish a simple but clever connection between POLSAR image interpretation and deep learning. The experiment results tested on real POLSAR image show that the fast implementation of Wishart distance is very efficient (a POLSAR image with 768000 pixels can be classified in 0.53s), and both the single-hidden-layer architecture WN and the deep learning architecture W-DSN for POLSAR image classification perform well and work efficiently.

A target field design of open multi-purpose RF coil for musculoskeletal MR imaging at 3T.

PubMed

Gao, Fei; Zhang, Rui; Zhou, Diange; Wang, Xiaoying; Huang, Kefu; Zhang, Jue

2016-10-01

Musculoskeletal MR imaging under multi-angle situations plays an increasingly important role in assessing joint and muscle tissues system. However, there are still limitations due to the closed structures of most conventional RF coils. In this study, a time-harmonic target-field method was employed to design open multi-purpose coil (OMC) for multi-angle musculoskeletal MR imaging. The phantom imaging results suggested that the proposed OMC could achieve homogeneously distributed magnetic field and high signal-to-noise ratio (SNR) of 239.04±0.83 in the region of interest (ROI). The maximum temperature in the heating hazard test was 16°C lower than the standard regulation, which indicated the security of the designed OMC. Furthermore, to demonstrate the effectiveness of the proposed OMC for musculoskeletal MR imaging, especially for multi-angle imaging, a healthy volunteer was examined for MR imaging of elbow, ankle and knee using OMC. The in vivo imaging results showed that the proposed OMC is effective for MR imaging of musculoskeletal tissues at different body parts, with satisfied B1 field homogeneity and SNR. Moreover, the open structure of the OMC could provide a large joint movement region. The proposed open multi-purpose coil is feasible for musculoskeletal MR imaging, and potentially, it is more suitable for the evaluation of musculoskeletal tissues under multi-angle conditions. Copyright © 2016. Published by Elsevier Inc.

Instance annotation for multi-instance multi-label learning

Treesearch

F. Briggs; X.Z. Fern; R. Raich; Q. Lou

2013-01-01

Multi-instance multi-label learning (MIML) is a framework for supervised classification where the objects to be classified are bags of instances associated with multiple labels. For example, an image can be represented as a bag of segments and associated with a list of objects it contains. Prior work on MIML has focused on predicting label sets for previously unseen...

Opacity annotation of diffuse lung diseases using deep convolutional neural network with multi-channel information

NASA Astrophysics Data System (ADS)

Mabu, Shingo; Kido, Shoji; Hashimoto, Noriaki; Hirano, Yasushi; Kuremoto, Takashi

2018-02-01

This research proposes a multi-channel deep convolutional neural network (DCNN) for computer-aided diagnosis (CAD) that classifies normal and abnormal opacities of diffuse lung diseases in Computed Tomography (CT) images. Because CT images are gray scale, DCNN usually uses one channel for inputting image data. On the other hand, this research uses multi-channel DCNN where each channel corresponds to the original raw image or the images transformed by some preprocessing techniques. In fact, the information obtained only from raw images is limited and some conventional research suggested that preprocessing of images contributes to improving the classification accuracy. Thus, the combination of the original and preprocessed images is expected to show higher accuracy. The proposed method realizes region of interest (ROI)-based opacity annotation. We used lung CT images taken in Yamaguchi University Hospital, Japan, and they are divided into 32 × 32 ROI images. The ROIs contain six kinds of opacities: consolidation, ground-glass opacity (GGO), emphysema, honeycombing, nodular, and normal. The aim of the proposed method is to classify each ROI into one of the six opacities (classes). The DCNN structure is based on VGG network that secured the first and second places in ImageNet ILSVRC-2014. From the experimental results, the classification accuracy of the proposed method was better than the conventional method with single channel, and there was a significant difference between them.

Pet fur color and texture classification

NASA Astrophysics Data System (ADS)

Yen, Jonathan; Mukherjee, Debarghar; Lim, SukHwan; Tretter, Daniel

2007-01-01

Object segmentation is important in image analysis for imaging tasks such as image rendering and image retrieval. Pet owners have been known to be quite vocal about how important it is to render their pets perfectly. We present here an algorithm for pet (mammal) fur color classification and an algorithm for pet (animal) fur texture classification. Per fur color classification can be applied as a necessary condition for identifying the regions in an image that may contain pets much like the skin tone classification for human flesh detection. As a result of the evolution, fur coloration of all mammals is caused by a natural organic pigment called Melanin and Melanin has only very limited color ranges. We have conducted a statistical analysis and concluded that mammal fur colors can be only in levels of gray or in two colors after the proper color quantization. This pet fur color classification algorithm has been applied for peteye detection. We also present here an algorithm for animal fur texture classification using the recently developed multi-resolution directional sub-band Contourlet transform. The experimental results are very promising as these transforms can identify regions of an image that may contain fur of mammals, scale of reptiles and feather of birds, etc. Combining the color and texture classification, one can have a set of strong classifiers for identifying possible animals in an image.

Automatic analysis of diabetic peripheral neuropathy using multi-scale quantitative morphology of nerve fibres in corneal confocal microscopy imaging.

PubMed

Dabbah, M A; Graham, J; Petropoulos, I N; Tavakoli, M; Malik, R A

2011-10-01

Diabetic peripheral neuropathy (DPN) is one of the most common long term complications of diabetes. Corneal confocal microscopy (CCM) image analysis is a novel non-invasive technique which quantifies corneal nerve fibre damage and enables diagnosis of DPN. This paper presents an automatic analysis and classification system for detecting nerve fibres in CCM images based on a multi-scale adaptive dual-model detection algorithm. The algorithm exploits the curvilinear structure of the nerve fibres and adapts itself to the local image information. Detected nerve fibres are then quantified and used as feature vectors for classification using random forest (RF) and neural networks (NNT) classifiers. We show, in a comparative study with other well known curvilinear detectors, that the best performance is achieved by the multi-scale dual model in conjunction with the NNT classifier. An evaluation of clinical effectiveness shows that the performance of the automated system matches that of ground-truth defined by expert manual annotation. Copyright © 2011 Elsevier B.V. All rights reserved.

The LSST Data Mining Research Agenda

NASA Astrophysics Data System (ADS)

Borne, K.; Becla, J.; Davidson, I.; Szalay, A.; Tyson, J. A.

2008-12-01

We describe features of the LSST science database that are amenable to scientific data mining, object classification, outlier identification, anomaly detection, image quality assurance, and survey science validation. The data mining research agenda includes: scalability (at petabytes scales) of existing machine learning and data mining algorithms; development of grid-enabled parallel data mining algorithms; designing a robust system for brokering classifications from the LSST event pipeline (which may produce 10,000 or more event alerts per night) multi-resolution methods for exploration of petascale databases; indexing of multi-attribute multi-dimensional astronomical databases (beyond spatial indexing) for rapid querying of petabyte databases; and more.

Land Cover Monitoring for Water Resources Management in Angola

NASA Astrophysics Data System (ADS)

Miguel, Irina; Navarro, Ana; Rolim, Joao; Catalao, Joao; Silva, Joel; Painho, Marco; Vekerdy, Zoltan

2016-08-01

The aim of this paper is to assess the impact of improved temporal resolution and multi-source satellite data (SAR and optical) on land cover mapping and monitoring for efficient water resources management. For that purpose, we developed an integrated approach based on image classification and on NDVI and SAR backscattering (VV and VH) time series for land cover mapping and crop's irrigation requirements computation. We analysed 28 SPOT-5 Take-5 images with high temporal revisiting time (5 days), 9 Sentinel-1 dual polarization GRD images and in-situ data acquired during the crop growing season. Results show that the combination of images from different sources provides the best information to map agricultural areas. The increase of the images temporal resolution allows the improvement of the estimation of the crop parameters, and then, to calculate of the crop's irrigation requirements. However, this aspect was not fully exploited due to the lack of EO data for the complete growing season.

Comparison of Hyperspectral and Multispectral Satellites for Forest Alliance Classification in the San Francisco Bay Area

NASA Astrophysics Data System (ADS)

Clark, M. L.

2016-12-01

The goal of this study was to assess multi-temporal, Hyperspectral Infrared Imager (HyspIRI) satellite imagery for improved forest class mapping relative to multispectral satellites. The study area was the western San Francisco Bay Area, California and forest alliances (e.g., forest communities defined by dominant or co-dominant trees) were defined using the U.S. National Vegetation Classification System. Simulated 30-m HyspIRI, Landsat 8 and Sentinel-2 imagery were processed from image data acquired by NASA's AVIRIS airborne sensor in year 2015, with summer and multi-temporal (spring, summer, fall) data analyzed separately. HyspIRI reflectance was used to generate a suite of hyperspectral metrics that targeted key spectral features related to chemical and structural properties. The Random Forests classifier was applied to the simulated images and overall accuracies (OA) were compared to those from real Landsat 8 images. For each image group, broad land cover (e.g., Needle-leaf Trees, Broad-leaf Trees, Annual agriculture, Herbaceous, Built-up) was classified first, followed by a finer-detail forest alliance classification for pixels mapped as closed-canopy forest. There were 5 needle-leaf tree alliances and 16 broad-leaf tree alliances, including 7 Quercus (oak) alliance types. No forest alliance classification exceeded 50% OA, indicating that there was broad spectral similarity among alliances, most of which were not spectrally pure but rather a mix of tree species. In general, needle-leaf (Pine, Redwood, Douglas Fir) alliances had better class accuracies than broad-leaf alliances (Oaks, Madrone, Bay Laurel, Buckeye, etc). Multi-temporal data classifications all had 5-6% greater OA than with comparable summer data. For simulated data, HyspIRI metrics had 4-5% greater OA than Landsat 8 and Sentinel-2 multispectral imagery and 3-4% greater OA than HyspIRI reflectance. Finally, HyspIRI metrics had 8% greater OA than real Landsat 8 imagery. In conclusion, forest alliance classification was found to be a difficult remote sensing application with moderate resolution (30 m) satellite imagery; however, of the data tested, HyspIRI spectral metrics had the best performance relative to multispectral satellites.

The edge-preservation multi-classifier relearning framework for the classification of high-resolution remotely sensed imagery

NASA Astrophysics Data System (ADS)

Han, Xiaopeng; Huang, Xin; Li, Jiayi; Li, Yansheng; Yang, Michael Ying; Gong, Jianya

2018-04-01

In recent years, the availability of high-resolution imagery has enabled more detailed observation of the Earth. However, it is imperative to simultaneously achieve accurate interpretation and preserve the spatial details for the classification of such high-resolution data. To this aim, we propose the edge-preservation multi-classifier relearning framework (EMRF). This multi-classifier framework is made up of support vector machine (SVM), random forest (RF), and sparse multinomial logistic regression via variable splitting and augmented Lagrangian (LORSAL) classifiers, considering their complementary characteristics. To better characterize complex scenes of remote sensing images, relearning based on landscape metrics is proposed, which iteratively quantizes both the landscape composition and spatial configuration by the use of the initial classification results. In addition, a novel tri-training strategy is proposed to solve the over-smoothing effect of relearning by means of automatic selection of training samples with low classification certainties, which always distribute in or near the edge areas. Finally, EMRF flexibly combines the strengths of relearning and tri-training via the classification certainties calculated by the probabilistic output of the respective classifiers. It should be noted that, in order to achieve an unbiased evaluation, we assessed the classification accuracy of the proposed framework using both edge and non-edge test samples. The experimental results obtained with four multispectral high-resolution images confirm the efficacy of the proposed framework, in terms of both edge and non-edge accuracy.

Characterization of groups using composite kernels and multi-source fMRI analysis data: application to schizophrenia

PubMed Central

Castro, Eduardo; Martínez-Ramón, Manel; Pearlson, Godfrey; Sui, Jing; Calhoun, Vince D.

2011-01-01

Pattern classification of brain imaging data can enable the automatic detection of differences in cognitive processes of specific groups of interest. Furthermore, it can also give neuroanatomical information related to the regions of the brain that are most relevant to detect these differences by means of feature selection procedures, which are also well-suited to deal with the high dimensionality of brain imaging data. This work proposes the application of recursive feature elimination using a machine learning algorithm based on composite kernels to the classification of healthy controls and patients with schizophrenia. This framework, which evaluates nonlinear relationships between voxels, analyzes whole-brain fMRI data from an auditory task experiment that is segmented into anatomical regions and recursively eliminates the uninformative ones based on their relevance estimates, thus yielding the set of most discriminative brain areas for group classification. The collected data was processed using two analysis methods: the general linear model (GLM) and independent component analysis (ICA). GLM spatial maps as well as ICA temporal lobe and default mode component maps were then input to the classifier. A mean classification accuracy of up to 95% estimated with a leave-two-out cross-validation procedure was achieved by doing multi-source data classification. In addition, it is shown that the classification accuracy rate obtained by using multi-source data surpasses that reached by using single-source data, hence showing that this algorithm takes advantage of the complimentary nature of GLM and ICA. PMID:21723948

Cell Motility Dynamics: A Novel Segmentation Algorithm to Quantify Multi-Cellular Bright Field Microscopy Images

PubMed Central

Zaritsky, Assaf; Natan, Sari; Horev, Judith; Hecht, Inbal; Wolf, Lior; Ben-Jacob, Eshel; Tsarfaty, Ilan

2011-01-01

Confocal microscopy analysis of fluorescence and morphology is becoming the standard tool in cell biology and molecular imaging. Accurate quantification algorithms are required to enhance the understanding of different biological phenomena. We present a novel approach based on image-segmentation of multi-cellular regions in bright field images demonstrating enhanced quantitative analyses and better understanding of cell motility. We present MultiCellSeg, a segmentation algorithm to separate between multi-cellular and background regions for bright field images, which is based on classification of local patches within an image: a cascade of Support Vector Machines (SVMs) is applied using basic image features. Post processing includes additional classification and graph-cut segmentation to reclassify erroneous regions and refine the segmentation. This approach leads to a parameter-free and robust algorithm. Comparison to an alternative algorithm on wound healing assay images demonstrates its superiority. The proposed approach was used to evaluate common cell migration models such as wound healing and scatter assay. It was applied to quantify the acceleration effect of Hepatocyte growth factor/scatter factor (HGF/SF) on healing rate in a time lapse confocal microscopy wound healing assay and demonstrated that the healing rate is linear in both treated and untreated cells, and that HGF/SF accelerates the healing rate by approximately two-fold. A novel fully automated, accurate, zero-parameters method to classify and score scatter-assay images was developed and demonstrated that multi-cellular texture is an excellent descriptor to measure HGF/SF-induced cell scattering. We show that exploitation of textural information from differential interference contrast (DIC) images on the multi-cellular level can prove beneficial for the analyses of wound healing and scatter assays. The proposed approach is generic and can be used alone or alongside traditional fluorescence single-cell processing to perform objective, accurate quantitative analyses for various biological applications. PMID:22096600

Cell motility dynamics: a novel segmentation algorithm to quantify multi-cellular bright field microscopy images.

PubMed

Zaritsky, Assaf; Natan, Sari; Horev, Judith; Hecht, Inbal; Wolf, Lior; Ben-Jacob, Eshel; Tsarfaty, Ilan

2011-01-01

Confocal microscopy analysis of fluorescence and morphology is becoming the standard tool in cell biology and molecular imaging. Accurate quantification algorithms are required to enhance the understanding of different biological phenomena. We present a novel approach based on image-segmentation of multi-cellular regions in bright field images demonstrating enhanced quantitative analyses and better understanding of cell motility. We present MultiCellSeg, a segmentation algorithm to separate between multi-cellular and background regions for bright field images, which is based on classification of local patches within an image: a cascade of Support Vector Machines (SVMs) is applied using basic image features. Post processing includes additional classification and graph-cut segmentation to reclassify erroneous regions and refine the segmentation. This approach leads to a parameter-free and robust algorithm. Comparison to an alternative algorithm on wound healing assay images demonstrates its superiority. The proposed approach was used to evaluate common cell migration models such as wound healing and scatter assay. It was applied to quantify the acceleration effect of Hepatocyte growth factor/scatter factor (HGF/SF) on healing rate in a time lapse confocal microscopy wound healing assay and demonstrated that the healing rate is linear in both treated and untreated cells, and that HGF/SF accelerates the healing rate by approximately two-fold. A novel fully automated, accurate, zero-parameters method to classify and score scatter-assay images was developed and demonstrated that multi-cellular texture is an excellent descriptor to measure HGF/SF-induced cell scattering. We show that exploitation of textural information from differential interference contrast (DIC) images on the multi-cellular level can prove beneficial for the analyses of wound healing and scatter assays. The proposed approach is generic and can be used alone or alongside traditional fluorescence single-cell processing to perform objective, accurate quantitative analyses for various biological applications.

Enhancing image classification models with multi-modal biomarkers

NASA Astrophysics Data System (ADS)

Caban, Jesus J.; Liao, David; Yao, Jianhua; Mollura, Daniel J.; Gochuico, Bernadette; Yoo, Terry

2011-03-01

Currently, most computer-aided diagnosis (CAD) systems rely on image analysis and statistical models to diagnose, quantify, and monitor the progression of a particular disease. In general, CAD systems have proven to be effective at providing quantitative measurements and assisting physicians during the decision-making process. As the need for more flexible and effective CADs continues to grow, questions about how to enhance their accuracy have surged. In this paper, we show how statistical image models can be augmented with multi-modal physiological values to create more robust, stable, and accurate CAD systems. In particular, this paper demonstrates how highly correlated blood and EKG features can be treated as biomarkers and used to enhance image classification models designed to automatically score subjects with pulmonary fibrosis. In our results, a 3-5% improvement was observed when comparing the accuracy of CADs that use multi-modal biomarkers with those that only used image features. Our results show that lab values such as Erythrocyte Sedimentation Rate and Fibrinogen, as well as EKG measurements such as QRS and I:40, are statistically significant and can provide valuable insights about the severity of the pulmonary fibrosis disease.

Detection and classification of interstitial lung diseases and emphysema using a joint morphological-fuzzy approach

NASA Astrophysics Data System (ADS)

Chang Chien, Kuang-Che; Fetita, Catalin; Brillet, Pierre-Yves; Prêteux, Françoise; Chang, Ruey-Feng

2009-02-01

Multi-detector computed tomography (MDCT) has high accuracy and specificity on volumetrically capturing serial images of the lung. It increases the capability of computerized classification for lung tissue in medical research. This paper proposes a three-dimensional (3D) automated approach based on mathematical morphology and fuzzy logic for quantifying and classifying interstitial lung diseases (ILDs) and emphysema. The proposed methodology is composed of several stages: (1) an image multi-resolution decomposition scheme based on a 3D morphological filter is used to detect and analyze the different density patterns of the lung texture. Then, (2) for each pattern in the multi-resolution decomposition, six features are computed, for which fuzzy membership functions define a probability of association with a pathology class. Finally, (3) for each pathology class, the probabilities are combined up according to the weight assigned to each membership function and two threshold values are used to decide the final class of the pattern. The proposed approach was tested on 10 MDCT cases and the classification accuracy was: emphysema: 95%, fibrosis/honeycombing: 84% and ground glass: 97%.

Directional Multi-scale Modeling of High-Resolution Computed Tomography (HRCT) Lung Images for Diffuse Lung Disease Classification

NASA Astrophysics Data System (ADS)

Vo, Kiet T.; Sowmya, Arcot

A directional multi-scale modeling scheme based on wavelet and contourlet transforms is employed to describe HRCT lung image textures for classifying four diffuse lung disease patterns: normal, emphysema, ground glass opacity (GGO) and honey-combing. Generalized Gaussian density parameters are used to represent the detail sub-band features obtained by wavelet and contourlet transforms. In addition, support vector machines (SVMs) with excellent performance in a variety of pattern classification problems are used as classifier. The method is tested on a collection of 89 slices from 38 patients, each slice of size 512x512, 16 bits/pixel in DICOM format. The dataset contains 70,000 ROIs of those slices marked by experienced radiologists. We employ this technique at different wavelet and contourlet transform scales for diffuse lung disease classification. The technique presented here has best overall sensitivity 93.40% and specificity 98.40%.

Multi-categorical deep learning neural network to classify retinal images: A pilot study employing small database.

PubMed

Choi, Joon Yul; Yoo, Tae Keun; Seo, Jeong Gi; Kwak, Jiyong; Um, Terry Taewoong; Rim, Tyler Hyungtaek

2017-01-01

Deep learning emerges as a powerful tool for analyzing medical images. Retinal disease detection by using computer-aided diagnosis from fundus image has emerged as a new method. We applied deep learning convolutional neural network by using MatConvNet for an automated detection of multiple retinal diseases with fundus photographs involved in STructured Analysis of the REtina (STARE) database. Dataset was built by expanding data on 10 categories, including normal retina and nine retinal diseases. The optimal outcomes were acquired by using a random forest transfer learning based on VGG-19 architecture. The classification results depended greatly on the number of categories. As the number of categories increased, the performance of deep learning models was diminished. When all 10 categories were included, we obtained results with an accuracy of 30.5%, relative classifier information (RCI) of 0.052, and Cohen's kappa of 0.224. Considering three integrated normal, background diabetic retinopathy, and dry age-related macular degeneration, the multi-categorical classifier showed accuracy of 72.8%, 0.283 RCI, and 0.577 kappa. In addition, several ensemble classifiers enhanced the multi-categorical classification performance. The transfer learning incorporated with ensemble classifier of clustering and voting approach presented the best performance with accuracy of 36.7%, 0.053 RCI, and 0.225 kappa in the 10 retinal diseases classification problem. First, due to the small size of datasets, the deep learning techniques in this study were ineffective to be applied in clinics where numerous patients suffering from various types of retinal disorders visit for diagnosis and treatment. Second, we found that the transfer learning incorporated with ensemble classifiers can improve the classification performance in order to detect multi-categorical retinal diseases. Further studies should confirm the effectiveness of algorithms with large datasets obtained from hospitals.

Classification of riparian forest species and health condition using multi-temporal and hyperspatial imagery from unmanned aerial system.

PubMed

Michez, Adrien; Piégay, Hervé; Lisein, Jonathan; Claessens, Hugues; Lejeune, Philippe

2016-03-01

Riparian forests are critically endangered many anthropogenic pressures and natural hazards. The importance of riparian zones has been acknowledged by European Directives, involving multi-scale monitoring. The use of this very-high-resolution and hyperspatial imagery in a multi-temporal approach is an emerging topic. The trend is reinforced by the recent and rapid growth of the use of the unmanned aerial system (UAS), which has prompted the development of innovative methodology. Our study proposes a methodological framework to explore how a set of multi-temporal images acquired during a vegetative period can differentiate some of the deciduous riparian forest species and their health conditions. More specifically, the developed approach intends to identify, through a process of variable selection, which variables derived from UAS imagery and which scale of image analysis are the most relevant to our objectives.The methodological framework is applied to two study sites to describe the riparian forest through two fundamental characteristics: the species composition and the health condition. These characteristics were selected not only because of their use as proxies for the riparian zone ecological integrity but also because of their use for river management.The comparison of various scales of image analysis identified the smallest object-based image analysis (OBIA) objects (ca. 1 m(2)) as the most relevant scale. Variables derived from spectral information (bands ratios) were identified as the most appropriate, followed by variables related to the vertical structure of the forest. Classification results show good overall accuracies for the species composition of the riparian forest (five classes, 79.5 and 84.1% for site 1 and site 2). The classification scenario regarding the health condition of the black alders of the site 1 performed the best (90.6%).The quality of the classification models developed with a UAS-based, cost-effective, and semi-automatic approach competes successfully with those developed using more expensive imagery, such as multi-spectral and hyperspectral airborne imagery. The high overall accuracy results obtained by the classification of the diseased alders open the door to applications dedicated to monitoring of the health conditions of riparian forest. Our methodological framework will allow UAS users to manage large imagery metric datasets derived from those dense time series.

[Object-oriented aquatic vegetation extracting approach based on visible vegetation indices.

PubMed

Jing, Ran; Deng, Lei; Zhao, Wen Ji; Gong, Zhao Ning

2016-05-01

Using the estimation of scale parameters (ESP) image segmentation tool to determine the ideal image segmentation scale, the optimal segmented image was created by the multi-scale segmentation method. Based on the visible vegetation indices derived from mini-UAV imaging data, we chose a set of optimal vegetation indices from a series of visible vegetation indices, and built up a decision tree rule. A membership function was used to automatically classify the study area and an aquatic vegetation map was generated. The results showed the overall accuracy of image classification using the supervised classification was 53.7%, and the overall accuracy of object-oriented image analysis (OBIA) was 91.7%. Compared with pixel-based supervised classification method, the OBIA method improved significantly the image classification result and further increased the accuracy of extracting the aquatic vegetation. The Kappa value of supervised classification was 0.4, and the Kappa value based OBIA was 0.9. The experimental results demonstrated that using visible vegetation indices derived from the mini-UAV data and OBIA method extracting the aquatic vegetation developed in this study was feasible and could be applied in other physically similar areas.

Semi-supervised classification tool for DubaiSat-2 multispectral imagery

NASA Astrophysics Data System (ADS)

Al-Mansoori, Saeed

2015-10-01

This paper addresses a semi-supervised classification tool based on a pixel-based approach of the multi-spectral satellite imagery. There are not many studies demonstrating such algorithm for the multispectral images, especially when the image consists of 4 bands (Red, Green, Blue and Near Infrared) as in DubaiSat-2 satellite images. The proposed approach utilizes both unsupervised and supervised classification schemes sequentially to identify four classes in the image, namely, water bodies, vegetation, land (developed and undeveloped areas) and paved areas (i.e. roads). The unsupervised classification concept is applied to identify two classes; water bodies and vegetation, based on a well-known index that uses the distinct wavelengths of visible and near-infrared sunlight that is absorbed and reflected by the plants to identify the classes; this index parameter is called "Normalized Difference Vegetation Index (NDVI)". Afterward, the supervised classification is performed by selecting training homogenous samples for roads and land areas. Here, a precise selection of training samples plays a vital role in the classification accuracy. Post classification is finally performed to enhance the classification accuracy, where the classified image is sieved, clumped and filtered before producing final output. Overall, the supervised classification approach produced higher accuracy than the unsupervised method. This paper shows some current preliminary research results which point out the effectiveness of the proposed technique in a virtual perspective.

Abstracting of suspected illegal land use in urban areas using case-based classification of remote sensing images

NASA Astrophysics Data System (ADS)

Chen, Fulong; Wang, Chao; Yang, Chengyun; Zhang, Hong; Wu, Fan; Lin, Wenjuan; Zhang, Bo

2008-11-01

This paper proposed a method that uses a case-based classification of remote sensing images and applied this method to abstract the information of suspected illegal land use in urban areas. Because of the discrete cases for imagery classification, the proposed method dealt with the oscillation of spectrum or backscatter within the same land use category, and it not only overcame the deficiency of maximum likelihood classification (the prior probability of land use could not be obtained) but also inherited the advantages of the knowledge-based classification system, such as artificial intelligence and automatic characteristics. Consequently, the proposed method could do the classifying better. Then the researchers used the object-oriented technique for shadow removal in highly dense city zones. With multi-temporal SPOT 5 images whose resolution was 2.5×2.5 meters, the researchers found that the method can abstract suspected illegal land use information in urban areas using post-classification comparison technique.

Model-Based Building Detection from Low-Cost Optical Sensors Onboard Unmanned Aerial Vehicles

NASA Astrophysics Data System (ADS)

Karantzalos, K.; Koutsourakis, P.; Kalisperakis, I.; Grammatikopoulos, L.

2015-08-01

The automated and cost-effective building detection in ultra high spatial resolution is of major importance for various engineering and smart city applications. To this end, in this paper, a model-based building detection technique has been developed able to extract and reconstruct buildings from UAV aerial imagery and low-cost imaging sensors. In particular, the developed approach through advanced structure from motion, bundle adjustment and dense image matching computes a DSM and a true orthomosaic from the numerous GoPro images which are characterised by important geometric distortions and fish-eye effect. An unsupervised multi-region, graphcut segmentation and a rule-based classification is responsible for delivering the initial multi-class classification map. The DTM is then calculated based on inpaininting and mathematical morphology process. A data fusion process between the detected building from the DSM/DTM and the classification map feeds a grammar-based building reconstruction and scene building are extracted and reconstructed. Preliminary experimental results appear quite promising with the quantitative evaluation indicating detection rates at object level of 88% regarding the correctness and above 75% regarding the detection completeness.

Land use/cover classification in the Brazilian Amazon using satellite images.

PubMed

Lu, Dengsheng; Batistella, Mateus; Li, Guiying; Moran, Emilio; Hetrick, Scott; Freitas, Corina da Costa; Dutra, Luciano Vieira; Sant'anna, Sidnei João Siqueira

2012-09-01

Land use/cover classification is one of the most important applications in remote sensing. However, mapping accurate land use/cover spatial distribution is a challenge, particularly in moist tropical regions, due to the complex biophysical environment and limitations of remote sensing data per se. This paper reviews experiments related to land use/cover classification in the Brazilian Amazon for a decade. Through comprehensive analysis of the classification results, it is concluded that spatial information inherent in remote sensing data plays an essential role in improving land use/cover classification. Incorporation of suitable textural images into multispectral bands and use of segmentation-based method are valuable ways to improve land use/cover classification, especially for high spatial resolution images. Data fusion of multi-resolution images within optical sensor data is vital for visual interpretation, but may not improve classification performance. In contrast, integration of optical and radar data did improve classification performance when the proper data fusion method was used. Of the classification algorithms available, the maximum likelihood classifier is still an important method for providing reasonably good accuracy, but nonparametric algorithms, such as classification tree analysis, has the potential to provide better results. However, they often require more time to achieve parametric optimization. Proper use of hierarchical-based methods is fundamental for developing accurate land use/cover classification, mainly from historical remotely sensed data.

Land use/cover classification in the Brazilian Amazon using satellite images

PubMed Central

Lu, Dengsheng; Batistella, Mateus; Li, Guiying; Moran, Emilio; Hetrick, Scott; Freitas, Corina da Costa; Dutra, Luciano Vieira; Sant’Anna, Sidnei João Siqueira

2013-01-01

Land use/cover classification is one of the most important applications in remote sensing. However, mapping accurate land use/cover spatial distribution is a challenge, particularly in moist tropical regions, due to the complex biophysical environment and limitations of remote sensing data per se. This paper reviews experiments related to land use/cover classification in the Brazilian Amazon for a decade. Through comprehensive analysis of the classification results, it is concluded that spatial information inherent in remote sensing data plays an essential role in improving land use/cover classification. Incorporation of suitable textural images into multispectral bands and use of segmentation-based method are valuable ways to improve land use/cover classification, especially for high spatial resolution images. Data fusion of multi-resolution images within optical sensor data is vital for visual interpretation, but may not improve classification performance. In contrast, integration of optical and radar data did improve classification performance when the proper data fusion method was used. Of the classification algorithms available, the maximum likelihood classifier is still an important method for providing reasonably good accuracy, but nonparametric algorithms, such as classification tree analysis, has the potential to provide better results. However, they often require more time to achieve parametric optimization. Proper use of hierarchical-based methods is fundamental for developing accurate land use/cover classification, mainly from historical remotely sensed data. PMID:24353353

Classification of Tree Species in Overstorey Canopy of Subtropical Forest Using QuickBird Images.

PubMed

Lin, Chinsu; Popescu, Sorin C; Thomson, Gavin; Tsogt, Khongor; Chang, Chein-I

2015-01-01

This paper proposes a supervised classification scheme to identify 40 tree species (2 coniferous, 38 broadleaf) belonging to 22 families and 36 genera in high spatial resolution QuickBird multispectral images (HMS). Overall kappa coefficient (OKC) and species conditional kappa coefficients (SCKC) were used to evaluate classification performance in training samples and estimate accuracy and uncertainty in test samples. Baseline classification performance using HMS images and vegetation index (VI) images were evaluated with an OKC value of 0.58 and 0.48 respectively, but performance improved significantly (up to 0.99) when used in combination with an HMS spectral-spatial texture image (SpecTex). One of the 40 species had very high conditional kappa coefficient performance (SCKC ≥ 0.95) using 4-band HMS and 5-band VIs images, but, only five species had lower performance (0.68 ≤ SCKC ≤ 0.94) using the SpecTex images. When SpecTex images were combined with a Visible Atmospherically Resistant Index (VARI), there was a significant improvement in performance in the training samples. The same level of improvement could not be replicated in the test samples indicating that a high degree of uncertainty exists in species classification accuracy which may be due to individual tree crown density, leaf greenness (inter-canopy gaps), and noise in the background environment (intra-canopy gaps). These factors increase uncertainty in the spectral texture features and therefore represent potential problems when using pixel-based classification techniques for multi-species classification.

Remote sensing imagery classification using multi-objective gravitational search algorithm

NASA Astrophysics Data System (ADS)

Zhang, Aizhu; Sun, Genyun; Wang, Zhenjie

2016-10-01

Simultaneous optimization of different validity measures can capture different data characteristics of remote sensing imagery (RSI) and thereby achieving high quality classification results. In this paper, two conflicting cluster validity indices, the Xie-Beni (XB) index and the fuzzy C-means (FCM) (Jm) measure, are integrated with a diversity-enhanced and memory-based multi-objective gravitational search algorithm (DMMOGSA) to present a novel multi-objective optimization based RSI classification method. In this method, the Gabor filter method is firstly implemented to extract texture features of RSI. Then, the texture features are syncretized with the spectral features to construct the spatial-spectral feature space/set of the RSI. Afterwards, cluster of the spectral-spatial feature set is carried out on the basis of the proposed method. To be specific, cluster centers are randomly generated initially. After that, the cluster centers are updated and optimized adaptively by employing the DMMOGSA. Accordingly, a set of non-dominated cluster centers are obtained. Therefore, numbers of image classification results of RSI are produced and users can pick up the most promising one according to their problem requirements. To quantitatively and qualitatively validate the effectiveness of the proposed method, the proposed classification method was applied to classifier two aerial high-resolution remote sensing imageries. The obtained classification results are compared with that produced by two single cluster validity index based and two state-of-the-art multi-objective optimization algorithms based classification results. Comparison results show that the proposed method can achieve more accurate RSI classification.

Development of a classification method for a crack on a pavement surface images using machine learning

NASA Astrophysics Data System (ADS)

Hizukuri, Akiyoshi; Nagata, Takeshi

2017-03-01

The purpose of this study is to develop a classification method for a crack on a pavement surface image using machine learning to reduce a maintenance fee. Our database consists of 3500 pavement surface images. This includes 800 crack and 2700 normal pavement surface images. The pavement surface images first are decomposed into several sub-images using a discrete wavelet transform (DWT) decomposition. We then calculate the wavelet sub-band histogram from each several sub-images at each level. The support vector machine (SVM) with computed wavelet sub-band histogram is employed for distinguishing between a crack and normal pavement surface images. The accuracies of the proposed classification method are 85.3% for crack and 84.4% for normal pavement images. The proposed classification method achieved high performance. Therefore, the proposed method would be useful in maintenance inspection.

A coarse-to-fine approach for medical hyperspectral image classification with sparse representation

NASA Astrophysics Data System (ADS)

Chang, Lan; Zhang, Mengmeng; Li, Wei

2017-10-01

A coarse-to-fine approach with sparse representation is proposed for medical hyperspectral image classification in this work. Segmentation technique with different scales is employed to exploit edges of the input image, where coarse super-pixel patches provide global classification information while fine ones further provide detail information. Different from common RGB image, hyperspectral image has multi bands to adjust the cluster center with more high precision. After segmentation, each super pixel is classified by recently-developed sparse representation-based classification (SRC), which assigns label for testing samples in one local patch by means of sparse linear combination of all the training samples. Furthermore, segmentation with multiple scales is employed because single scale is not suitable for complicate distribution of medical hyperspectral imagery. Finally, classification results for different sizes of super pixel are fused by some fusion strategy, offering at least two benefits: (1) the final result is obviously superior to that of segmentation with single scale, and (2) the fusion process significantly simplifies the choice of scales. Experimental results using real medical hyperspectral images demonstrate that the proposed method outperforms the state-of-the-art SRC.

Object-oriented classification using quasi-synchronous multispectral images (optical and radar) over agricultural surface

NASA Astrophysics Data System (ADS)

Marais Sicre, Claire; Baup, Frederic; Fieuzal, Remy

2015-04-01

In the context of climate change (with consequences on temperature and precipitation patterns), persons involved in agricultural management have the imperative to combine: sufficient productivity (as a response of the increment of the necessary foods) and durability of the resources (in order to restrain waste of water, fertilizer or environmental damages). To this end, a detailed knowledge of land use will improve the management of food and water, while preserving the ecosystems. Among the wide range of available monitoring tools, numerous studies demonstrated the interest of satellite images for agricultural mapping. Recently, the launch of several radar and optical sensors offer new perspectives for the multi-wavelength crop monitoring (Terrasar-X, Radarsat-2, Sentinel-1, Landsat-8…) allowing surface survey whatever the cloud conditions. Previous studies have demonstrated the interest of using multi-temporal approaches for crop classification, requiring several images for suitable classification results. Unfortunately, these approaches are limited (due to the satellite orbit cycle) and require waiting several days, week or month before offering an accurate land use map. The objective of this study is to compare the accuracy of object-oriented classification (random forest algorithm combined with vector layer coming from segmentation) to map winter crop (barley, rapeseed, grasslands and wheat) and soil states (bare soils with different surface roughness) using quasi-synchronous images. Satellite data are composed of multi-frequency and multi-polarization (HH, VV, HV and VH) images acquired near the 14th of April, 2010, over a studied area (90km²) located close to Toulouse in France. This is a region of alluvial plains and hills, which are mostly mixed farming and governed by a temperate climate. Remote sensing images are provided by Formosat-2 (04/18), Radarsat-2 (C-band, 04/15), Terrasar-X (X-band, 04/14) and ALOS (L-band, 04/14). Ground data are collected over 214 plots during the MCM'10 experiment conducted by the CESBIO laboratory in 2010. Classifications performances have been evaluated considering two cases: using only one frequency in optical or microwave domain, or using a combination of several frequencies (mixed between optical and microwave). For the first case, best results were obtained using optical wavelength with mean overall accuracy (OA) of 84%, followed by Terrasar-X (HH) and Radarsat-2 (HV or HV) which respectively offer overall accuracies of 77% and 73%. Concerning the vegetation, wheat was well classified whatever the wavelength used (OA > 93%). Barley was more complicated to classified and could be mingled with wheat or grassland. Best results were obtained using of green, red, blue, X-band or L-band wavelength offering an OA superior to 45%. Radar images were clearly well adapted to identify rapeseed (OA > 83%), especially at C (VV, HH and HV) and X-band (HH). The accuracy of grassland classification never exceeded 79% and results were stable between frequencies (excepted at L-band: 51%). The three soil roughness states were quite well classified whatever the wavelength and performances decreased with the increase of soil roughness. The combine use of multi-frequencies increased performances of the classification. Overall accuracy reached respectively 83% and 96% for C-band full polarization and for Formosat-2 multispectral approaches.

Radiomic biomarkers from PET/CT multi-modality fusion images for the prediction of immunotherapy response in advanced non-small cell lung cancer patients

NASA Astrophysics Data System (ADS)

Mu, Wei; Qi, Jin; Lu, Hong; Schabath, Matthew; Balagurunathan, Yoganand; Tunali, Ilke; Gillies, Robert James

2018-02-01

Purpose: Investigate the ability of using complementary information provided by the fusion of PET/CT images to predict immunotherapy response in non-small cell lung cancer (NSCLC) patients. Materials and methods: We collected 64 patients diagnosed with primary NSCLC treated with anti PD-1 checkpoint blockade. Using PET/CT images, fused images were created following multiple methodologies, resulting in up to 7 different images for the tumor region. Quantitative image features were extracted from the primary image (PET/CT) and the fused images, which included 195 from primary images and 1235 features from the fusion images. Three clinical characteristics were also analyzed. We then used support vector machine (SVM) classification models to identify discriminant features that predict immunotherapy response at baseline. Results: A SVM built with 87 fusion features and 13 primary PET/CT features on validation dataset had an accuracy and area under the ROC curve (AUROC) of 87.5% and 0.82, respectively, compared to a model built with 113 original PET/CT features on validation dataset 78.12% and 0.68. Conclusion: The fusion features shows better ability to predict immunotherapy response prediction compared to individual image features.

Machine-learning in grading of gliomas based on multi-parametric magnetic resonance imaging at 3T.

PubMed

Citak-Er, Fusun; Firat, Zeynep; Kovanlikaya, Ilhami; Ture, Ugur; Ozturk-Isik, Esin

2018-06-15

The objective of this study was to assess the contribution of multi-parametric (mp) magnetic resonance imaging (MRI) quantitative features in the machine learning-based grading of gliomas with a multi-region-of-interests approach. Forty-three patients who were newly diagnosed as having a glioma were included in this study. The patients were scanned prior to any therapy using a standard brain tumor magnetic resonance (MR) imaging protocol that included T1 and T2-weighted, diffusion-weighted, diffusion tensor, MR perfusion and MR spectroscopic imaging. Three different regions-of-interest were drawn for each subject to encompass tumor, immediate tumor periphery, and distant peritumoral edema/normal. The normalized mp-MRI features were used to build machine-learning models for differentiating low-grade gliomas (WHO grades I and II) from high grades (WHO grades III and IV). In order to assess the contribution of regional mp-MRI quantitative features to the classification models, a support vector machine-based recursive feature elimination method was applied prior to classification. A machine-learning model based on support vector machine algorithm with linear kernel achieved an accuracy of 93.0%, a specificity of 86.7%, and a sensitivity of 96.4% for the grading of gliomas using ten-fold cross validation based on the proposed subset of the mp-MRI features. In this study, machine-learning based on multiregional and multi-parametric MRI data has proven to be an important tool in grading glial tumors accurately even in this limited patient population. Future studies are needed to investigate the use of machine learning algorithms for brain tumor classification in a larger patient cohort. Copyright © 2018. Published by Elsevier Ltd.

Research on remote sensing identification of rural abandoned homesteads using multiparameter characteristics method

NASA Astrophysics Data System (ADS)

Xu, Saiping; Zhao, Qianjun; Yin, Kai; Cui, Bei; Zhang, Xiupeng

2016-10-01

Hollow village is a special phenomenon in the process of urbanization in China, which causes the waste of land resources. Therefore, it's imminent to carry out the hollow village recognition and renovation. However, there are few researches on the remote sensing identification of hollow village. In this context, in order to recognize the abandoned homesteads by remote sensing technique, the experiment was carried out as follows. Firstly, Gram-Schmidt transform method was utilized to complete the image fusion between multi-spectral images and panchromatic image of WorldView-2. Then the fusion images were made edge enhanced by high pass filtering. The multi-resolution segmentation and spectral difference segmentation were carried out to obtain the image objects. Secondly, spectral characteristic parameters were calculated, such as the normalized difference vegetation index (NDVI), the normalized difference water index (NDWI), the normalized difference Soil index (NDSI) etc. The shape feature parameters were extracted, such as Area, Length/Width Ratio and Rectangular Fit etc.. Thirdly, the SEaTH algorithm was used to determine the thresholds and optimize the feature space. Furthermore, the threshold classification method and the random forest classifier were combined, and the appropriate amount of samples were selected to train the classifier in order to determine the important feature parameters and the best classifier parameters involved in classification. Finally, the classification results was verified by computing the confusion matrix. The classification results were continuous and the phenomenon of salt and pepper using pixel classification was avoided effectively. In addition, the results showed that the extracted Abandoned Homesteads were in complete shapes, which could be distinguished from those confusing classes such as Homestead in Use and Roads.

A Receiver-Initiated Collision-Avoidance Protocol for Multi-Channel Networks

DTIC Science & Technology

2001-01-01

00-00-2001 to 00-00-2001 4. TITLE AND SUBTITLE A Receiver-Initiated Collision-Avoidance Protocol for Multi-Channel Netowrks 5a. CONTRACT NUMBER...images. 14. ABSTRACT 15. SUBJECT TERMS 16. SECURITY CLASSIFICATION OF: 17. LIMITATION OF ABSTRACT 18. NUMBER OF PAGES 10 19a. NAME OF RESPONSIBLE

Cascade classification of endocytoscopic images of colorectal lesions for automated pathological diagnosis

NASA Astrophysics Data System (ADS)

Itoh, Hayato; Mori, Yuichi; Misawa, Masashi; Oda, Masahiro; Kudo, Shin-ei; Mori, Kensaku

2018-02-01

This paper presents a new classification method for endocytoscopic images. Endocytoscopy is a new endoscope that enables us to perform conventional endoscopic observation and ultramagnified observation of cell level. This ultramagnified views (endocytoscopic images) make possible to perform pathological diagnosis only on endo-scopic views of polyps during colonoscopy. However, endocytoscopic image diagnosis requires higher experiences for physicians. An automated pathological diagnosis system is required to prevent the overlooking of neoplastic lesions in endocytoscopy. For this purpose, we propose a new automated endocytoscopic image classification method that classifies neoplastic and non-neoplastic endocytoscopic images. This method consists of two classification steps. At the first step, we classify an input image by support vector machine. We forward the image to the second step if the confidence of the first classification is low. At the second step, we classify the forwarded image by convolutional neural network. We reject the input image if the confidence of the second classification is also low. We experimentally evaluate the classification performance of the proposed method. In this experiment, we use about 16,000 and 4,000 colorectal endocytoscopic images as training and test data, respectively. The results show that the proposed method achieves high sensitivity 93.4% with small rejection rate 9.3% even for difficult test data.

Comparison of the application of B-mode and strain elastography ultrasound in the estimation of lymph node metastasis of papillary thyroid carcinoma based on a radiomics approach.

PubMed

Liu, Tongtong; Ge, Xifeng; Yu, Jinhua; Guo, Yi; Wang, Yuanyuan; Wang, Wenping; Cui, Ligang

2018-06-21

B-mode ultrasound (B-US) and strain elastography ultrasound (SE-US) images have a potential to distinguish thyroid tumor with different lymph node (LN) status. The purpose of our study is to investigate whether the application of multi-modality images including B-US and SE-US can improve the discriminability of thyroid tumor with LN metastasis based on a radiomics approach. Ultrasound (US) images including B-US and SE-US images of 75 papillary thyroid carcinoma (PTC) cases were retrospectively collected. A radiomics approach was developed in this study to estimate LNs status of PTC patients. The approach included image segmentation, quantitative feature extraction, feature selection and classification. Three feature sets were extracted from B-US, SE-US, and multi-modality containing B-US and SE-US. They were used to evaluate the contribution of different modalities. A total of 684 radiomics features have been extracted in our study. We used sparse representation coefficient-based feature selection method with 10-bootstrap to reduce the dimension of feature sets. Support vector machine with leave-one-out cross-validation was used to build the model for estimating LN status. Using features extracted from both B-US and SE-US, the radiomics-based model produced an area under the receiver operating characteristic curve (AUC) [Formula: see text] 0.90, accuracy (ACC) [Formula: see text] 0.85, sensitivity (SENS) [Formula: see text] 0.77 and specificity (SPEC) [Formula: see text] 0.88, which was better than using features extracted from B-US or SE-US separately. Multi-modality images provided more information in radiomics study. Combining use of B-US and SE-US could improve the LN metastasis estimation accuracy for PTC patients.

Classification of MR brain images by combination of multi-CNNs for AD diagnosis

NASA Astrophysics Data System (ADS)

Cheng, Danni; Liu, Manhua; Fu, Jianliang; Wang, Yaping

2017-07-01

Alzheimer's disease (AD) is an irreversible neurodegenerative disorder with progressive impairment of memory and cognitive functions. Its early diagnosis is crucial for development of future treatment. Magnetic resonance images (MRI) play important role to help understand the brain anatomical changes related to AD. Conventional methods extract the hand-crafted features such as gray matter volumes and cortical thickness and train a classifier to distinguish AD from other groups. Different from these methods, this paper proposes to construct multiple deep 3D convolutional neural networks (3D-CNNs) to learn the various features from local brain images which are combined to make the final classification for AD diagnosis. First, a number of local image patches are extracted from the whole brain image and a 3D-CNN is built upon each local patch to transform the local image into more compact high-level features. Then, the upper convolution and fully connected layers are fine-tuned to combine the multiple 3D-CNNs for image classification. The proposed method can automatically learn the generic features from imaging data for classification. Our method is evaluated using T1-weighted structural MR brain images on 428 subjects including 199 AD patients and 229 normal controls (NC) from Alzheimer's Disease Neuroimaging Initiative (ADNI) database. Experimental results show that the proposed method achieves an accuracy of 87.15% and an AUC (area under the ROC curve) of 92.26% for AD classification, demonstrating the promising classification performances.

Brain tumour classification and abnormality detection using neuro-fuzzy technique and Otsu thresholding.

PubMed

Renjith, Arokia; Manjula, P; Mohan Kumar, P

2015-01-01

Brain tumour is one of the main causes for an increase in transience among children and adults. This paper proposes an improved method based on Magnetic Resonance Imaging (MRI) brain image classification and image segmentation approach. Automated classification is encouraged by the need of high accuracy when dealing with a human life. The detection of the brain tumour is a challenging problem, due to high diversity in tumour appearance and ambiguous tumour boundaries. MRI images are chosen for detection of brain tumours, as they are used in soft tissue determinations. First of all, image pre-processing is used to enhance the image quality. Second, dual-tree complex wavelet transform multi-scale decomposition is used to analyse texture of an image. Feature extraction extracts features from an image using gray-level co-occurrence matrix (GLCM). Then, the Neuro-Fuzzy technique is used to classify the stages of brain tumour as benign, malignant or normal based on texture features. Finally, tumour location is detected using Otsu thresholding. The classifier performance is evaluated based on classification accuracies. The simulated results show that the proposed classifier provides better accuracy than previous method.

Collagen morphology and texture analysis: from statistics to classification

PubMed Central

Mostaço-Guidolin, Leila B.; Ko, Alex C.-T.; Wang, Fei; Xiang, Bo; Hewko, Mark; Tian, Ganghong; Major, Arkady; Shiomi, Masashi; Sowa, Michael G.

2013-01-01

In this study we present an image analysis methodology capable of quantifying morphological changes in tissue collagen fibril organization caused by pathological conditions. Texture analysis based on first-order statistics (FOS) and second-order statistics such as gray level co-occurrence matrix (GLCM) was explored to extract second-harmonic generation (SHG) image features that are associated with the structural and biochemical changes of tissue collagen networks. Based on these extracted quantitative parameters, multi-group classification of SHG images was performed. With combined FOS and GLCM texture values, we achieved reliable classification of SHG collagen images acquired from atherosclerosis arteries with >90% accuracy, sensitivity and specificity. The proposed methodology can be applied to a wide range of conditions involving collagen re-modeling, such as in skin disorders, different types of fibrosis and muscular-skeletal diseases affecting ligaments and cartilage. PMID:23846580

Updating Landsat-derived land-cover maps using change detection and masking techniques

NASA Technical Reports Server (NTRS)

Likens, W.; Maw, K.

1982-01-01

The California Integrated Remote Sensing System's San Bernardino County Project was devised to study the utilization of a data base at a number of jurisdictional levels. The present paper discusses the implementation of change-detection and masking techniques in the updating of Landsat-derived land-cover maps. A baseline landcover classification was first created from a 1976 image, then the adjusted 1976 image was compared with a 1979 scene by the techniques of (1) multidate image classification, (2) difference image-distribution tails thresholding, (3) difference image classification, and (4) multi-dimensional chi-square analysis of a difference image. The union of the results of methods 1, 3 and 4 was used to create a mask of possible change areas between 1976 and 1979, which served to limit analysis of the update image and reduce comparison errors in unchanged areas. The techniques of spatial smoothing of change-detection products, and of combining results of difference change-detection algorithms are also shown to improve Landsat change-detection accuracies.

Object-Based Paddy Rice Mapping Using HJ-1A/B Data and Temporal Features Extracted from Time Series MODIS NDVI Data

PubMed Central

Singha, Mrinal; Wu, Bingfang; Zhang, Miao

2016-01-01

Accurate and timely mapping of paddy rice is vital for food security and environmental sustainability. This study evaluates the utility of temporal features extracted from coarse resolution data for object-based paddy rice classification of fine resolution data. The coarse resolution vegetation index data is first fused with the fine resolution data to generate the time series fine resolution data. Temporal features are extracted from the fused data and added with the multi-spectral data to improve the classification accuracy. Temporal features provided the crop growth information, while multi-spectral data provided the pattern variation of paddy rice. The achieved overall classification accuracy and kappa coefficient were 84.37% and 0.68, respectively. The results indicate that the use of temporal features improved the overall classification accuracy of a single-date multi-spectral image by 18.75% from 65.62% to 84.37%. The minimum sensitivity (MS) of the paddy rice classification has also been improved. The comparison showed that the mapped paddy area was analogous to the agricultural statistics at the district level. This work also highlighted the importance of feature selection to achieve higher classification accuracies. These results demonstrate the potential of the combined use of temporal and spectral features for accurate paddy rice classification. PMID:28025525

Object-Based Paddy Rice Mapping Using HJ-1A/B Data and Temporal Features Extracted from Time Series MODIS NDVI Data.

PubMed

Singha, Mrinal; Wu, Bingfang; Zhang, Miao

2016-12-22

Accurate and timely mapping of paddy rice is vital for food security and environmental sustainability. This study evaluates the utility of temporal features extracted from coarse resolution data for object-based paddy rice classification of fine resolution data. The coarse resolution vegetation index data is first fused with the fine resolution data to generate the time series fine resolution data. Temporal features are extracted from the fused data and added with the multi-spectral data to improve the classification accuracy. Temporal features provided the crop growth information, while multi-spectral data provided the pattern variation of paddy rice. The achieved overall classification accuracy and kappa coefficient were 84.37% and 0.68, respectively. The results indicate that the use of temporal features improved the overall classification accuracy of a single-date multi-spectral image by 18.75% from 65.62% to 84.37%. The minimum sensitivity (MS) of the paddy rice classification has also been improved. The comparison showed that the mapped paddy area was analogous to the agricultural statistics at the district level. This work also highlighted the importance of feature selection to achieve higher classification accuracies. These results demonstrate the potential of the combined use of temporal and spectral features for accurate paddy rice classification.

An approach for combining airborne LiDAR and high-resolution aerial color imagery using Gaussian processes

NASA Astrophysics Data System (ADS)

Liu, Yansong; Monteiro, Sildomar T.; Saber, Eli

2015-10-01

Changes in vegetation cover, building construction, road network and traffic conditions caused by urban expansion affect the human habitat as well as the natural environment in rapidly developing cities. It is crucial to assess these changes and respond accordingly by identifying man-made and natural structures with accurate classification algorithms. With the increase in use of multi-sensor remote sensing systems, researchers are able to obtain a more complete description of the scene of interest. By utilizing multi-sensor data, the accuracy of classification algorithms can be improved. In this paper, we propose a method for combining 3D LiDAR point clouds and high-resolution color images to classify urban areas using Gaussian processes (GP). GP classification is a powerful non-parametric classification method that yields probabilistic classification results. It makes predictions in a way that addresses the uncertainty of real world. In this paper, we attempt to identify man-made and natural objects in urban areas including buildings, roads, trees, grass, water and vehicles. LiDAR features are derived from the 3D point clouds and the spatial and color features are extracted from RGB images. For classification, we use the Laplacian approximation for GP binary classification on the new combined feature space. The multiclass classification has been implemented by using one-vs-all binary classification strategy. The result of applying support vector machines (SVMs) and logistic regression (LR) classifier is also provided for comparison. Our experiments show a clear improvement of classification results by using the two sensors combined instead of each sensor separately. Also we found the advantage of applying GP approach to handle the uncertainty in classification result without compromising accuracy compared to SVM, which is considered as the state-of-the-art classification method.

Neuro-classification of multi-type Landsat Thematic Mapper data

NASA Technical Reports Server (NTRS)

Zhuang, Xin; Engel, Bernard A.; Fernandez, R. N.; Johannsen, Chris J.

1991-01-01

Neural networks have been successful in image classification and have shown potential for classifying remotely sensed data. This paper presents classifications of multitype Landsat Thematic Mapper (TM) data using neural networks. The Landsat TM Image for March 23, 1987 with accompanying ground observation data for a study area In Miami County, Indiana, U.S.A. was utilized to assess recognition of crop residues. Principal components and spectral ratio transformations were performed on the TM data. In addition, a layer of the geographic information system (GIS) for the study site was incorporated to generate GIS-enhanced TM data. This paper discusses (1) the performance of neuro-classification on each type of data, (2) how neural networks recognized each type of data as a new image and (3) comparisons of the results for each type of data obtained using neural networks, maximum likelihood, and minimum distance classifiers.

Detection of Deforestation and Land Conversion in Rondonia, Brazil Using Change Detection Techniques

NASA Technical Reports Server (NTRS)

Guild, Liane S.; Cohen, Warren B,; Kauffman, J. Boone; Peterson, David L. (Technical Monitor)

2001-01-01

Fires associated with tropical deforestation, land conversion, and land use greatly contribute to emissions as well as the depletion of carbon and nutrient pools. The objective of this research was to compare change detection techniques for identifying deforestation and cattle pasture formation during a period of early colonization and agricultural expansion in the vicinity of Jamari, Rond6nia. Multi-date Landsat Thematic Mapper (TM) data between 1984 and 1992 was examined in a 94 370-ha area of active deforestation to map land cover change. The Tasseled Cap (TC) transformation was used to enhance the contrast between forest, cleared areas, and regrowth. TC images were stacked into a composite multi-date TC and used in a principal components (PC) transformation to identify change components. In addition, consecutive TC image pairs were differenced and stacked into a composite multi-date differenced image. A maximum likelihood classification of each image composite was compared for identification of land cover change. The multi-date TC composite classification had the best accuracy of 78.1% (kappa). By 1984, only 5% of the study area had been cleared, but by 1992, 11% of the area had been deforested, primarily for pasture and 7% lost due to hydroelectric dam flooding. Finally, discrimination of pasture versus cultivation was improved due to the ability to detect land under sustained clearing opened to land exhibiting regrowth with infrequent clearing.

MultiSpec: A Desktop and Online Geospatial Image Data Processing Tool

NASA Astrophysics Data System (ADS)

Biehl, L. L.; Hsu, W. K.; Maud, A. R. M.; Yeh, T. T.

2017-12-01

MultiSpec is an easy to learn and use, freeware image processing tool for interactively analyzing a broad spectrum of geospatial image data, with capabilities such as image display, unsupervised and supervised classification, feature extraction, feature enhancement, and several other functions. Originally developed for Macintosh and Windows desktop computers, it has a community of several thousand users worldwide, including researchers and educators, as a practical and robust solution for analyzing multispectral and hyperspectral remote sensing data in several different file formats. More recently MultiSpec was adapted to run in the HUBzero collaboration platform so that it can be used within a web browser, allowing new user communities to be engaged through science gateways. MultiSpec Online has also been extended to interoperate with other components (e.g., data management) in HUBzero through integration with the geospatial data building blocks (GABBs) project. This integration enables a user to directly launch MultiSpec Online from data that is stored and/or shared in a HUBzero gateway and to save output data from MultiSpec Online to hub storage, allowing data sharing and multi-step workflows without having to move data between different systems. MultiSpec has also been used in K-12 classes for which one example is the GLOBE program (www.globe.gov) and in outreach material such as that provided by the USGS (eros.usgs.gov/educational-activities). MultiSpec Online now provides teachers with another way to use MultiSpec without having to install the desktop tool. Recently MultiSpec Online was used in a geospatial data session with 30-35 middle school students at the Turned Onto Technology and Leadership (TOTAL) Camp in the summers of 2016 and 2017 at Purdue University. The students worked on a flood mapping exercise using Landsat 5 data to learn about land remote sensing using supervised classification techniques. Online documentation is available for MultiSpec (engineering.purdue.edu/ biehl/MultiSpec/) including a reference manual and several tutorials allowing young high-school students through research faculty to learn the basic functions in MultiSpec. Some of the tutorials have been translated to other languages by MultiSpec users.

Training echo state networks for rotation-invariant bone marrow cell classification.

PubMed

Kainz, Philipp; Burgsteiner, Harald; Asslaber, Martin; Ahammer, Helmut

2017-01-01

The main principle of diagnostic pathology is the reliable interpretation of individual cells in context of the tissue architecture. Especially a confident examination of bone marrow specimen is dependent on a valid classification of myeloid cells. In this work, we propose a novel rotation-invariant learning scheme for multi-class echo state networks (ESNs), which achieves very high performance in automated bone marrow cell classification. Based on representing static images as temporal sequence of rotations, we show how ESNs robustly recognize cells of arbitrary rotations by taking advantage of their short-term memory capacity. The performance of our approach is compared to a classification random forest that learns rotation-invariance in a conventional way by exhaustively training on multiple rotations of individual samples. The methods were evaluated on a human bone marrow image database consisting of granulopoietic and erythropoietic cells in different maturation stages. Our ESN approach to cell classification does not rely on segmentation of cells or manual feature extraction and can therefore directly be applied to image data.

Marker-Based Hierarchical Segmentation and Classification Approach for Hyperspectral Imagery

NASA Technical Reports Server (NTRS)

Tarabalka, Yuliya; Tilton, James C.; Benediktsson, Jon Atli; Chanussot, Jocelyn

2011-01-01

The Hierarchical SEGmentation (HSEG) algorithm, which is a combination of hierarchical step-wise optimization and spectral clustering, has given good performances for hyperspectral image analysis. This technique produces at its output a hierarchical set of image segmentations. The automated selection of a single segmentation level is often necessary. We propose and investigate the use of automatically selected markers for this purpose. In this paper, a novel Marker-based HSEG (M-HSEG) method for spectral-spatial classification of hyperspectral images is proposed. First, pixelwise classification is performed and the most reliably classified pixels are selected as markers, with the corresponding class labels. Then, a novel constrained marker-based HSEG algorithm is applied, resulting in a spectral-spatial classification map. The experimental results show that the proposed approach yields accurate segmentation and classification maps, and thus is attractive for hyperspectral image analysis.

Diagnostic discrepancies in retinopathy of prematurity classification

PubMed Central

Campbell, J. Peter; Ryan, Michael C.; Lore, Emily; Tian, Peng; Ostmo, Susan; Jonas, Karyn; Chan, R.V. Paul; Chiang, Michael F.

2016-01-01

Objective To identify the most common areas for discrepancy in retinopathy of prematurity (ROP) classification between experts. Design Prospective cohort study. Subjects, Participants, and/or Controls 281 infants were identified as part of a multi-center, prospective, ROP cohort study from 7 participating centers. Each site had participating ophthalmologists who provided the clinical classification after routine examination using binocular indirect ophthalmoscopy (BIO), and obtained wide-angle retinal images, which were independently classified by two study experts. Methods Wide-angle retinal images (RetCam; Clarity Medical Systems, Pleasanton, CA) were obtained from study subjects, and two experts evaluated each image using a secure web-based module. Image-based classifications for zone, stage, plus disease, overall disease category (no ROP, mild ROP, Type II or pre-plus, and Type I) were compared between the two experts, and to the clinical classification obtained by BIO. Main Outcome Measures Inter-expert image-based agreement and image-based vs. ophthalmoscopic diagnostic agreement using absolute agreement and weighted kappa statistic. Results 1553 study eye examinations from 281 infants were included in the study. Experts disagreed on the stage classification in 620/1553 (40%) of comparisons, plus disease classification (including pre-plus) in 287/1553 (18%), zone in 117/1553 (8%), and overall ROP category in 618/1553 (40%). However, agreement for presence vs. absence of type 1 disease was >95%. There were no differences between image-based and clinical classification except for zone III disease. Conclusions The most common area of discrepancy in ROP classification is stage, although inter-expert agreement for clinically-significant disease such as presence vs. absence of type 1 and type 2 disease is high. There were no differences between image-based grading and the clinical exam in the ability to detect clinically-significant disease. This study provides additional evidence that image-based classification of ROP reliably detects clinically significant levels of ROP with high accuracy compared to the clinical exam. PMID:27238376

Naval sensor data database (NSDD)

NASA Astrophysics Data System (ADS)

Robertson, Candace J.; Tubridy, Lisa H.

1999-08-01

The Naval Sensor Data database (NSDD) is a multi-year effort to archive, catalogue, and disseminate data from all types of sensors to the mine warfare, signal and image processing, and sensor development communities. The purpose is to improve and accelerate research and technology. Providing performers with the data required to develop and validate improvements in hardware, simulation, and processing will foster advances in sensor and system performance. The NSDD will provide a centralized source of sensor data in its associated ground truth, which will support an improved understanding will be benefited in the areas of signal processing, computer-aided detection and classification, data compression, data fusion, and geo-referencing, as well as sensor and sensor system design.

Development of a Support Vector Machine - Based Image Analysis System for Focal Liver Lesions Classification in Magnetic Resonance Images

NASA Astrophysics Data System (ADS)

Gatos, I.; Tsantis, S.; Karamesini, M.; Skouroliakou, A.; Kagadis, G.

2015-09-01

Purpose: The design and implementation of a computer-based image analysis system employing the support vector machine (SVM) classifier system for the classification of Focal Liver Lesions (FLLs) on routine non-enhanced, T2-weighted Magnetic Resonance (MR) images. Materials and Methods: The study comprised 92 patients; each one of them has undergone MRI performed on a Magnetom Concerto (Siemens). Typical signs on dynamic contrast-enhanced MRI and biopsies were employed towards a three class categorization of the 92 cases: 40-benign FLLs, 25-Hepatocellular Carcinomas (HCC) within Cirrhotic liver parenchyma and 27-liver metastases from Non-Cirrhotic liver. Prior to FLLs classification an automated lesion segmentation algorithm based on Marcov Random Fields was employed in order to acquire each FLL Region of Interest. 42 texture features derived from the gray-level histogram, co-occurrence and run-length matrices and 12 morphological features were obtained from each lesion. Stepwise multi-linear regression analysis was utilized to avoid feature redundancy leading to a feature subset that fed the multiclass SVM classifier designed for lesion classification. SVM System evaluation was performed by means of leave-one-out method and ROC analysis. Results: Maximum accuracy for all three classes (90.0%) was obtained by means of the Radial Basis Kernel Function and three textural features (Inverse- Different-Moment, Sum-Variance and Long-Run-Emphasis) that describe lesion's contrast, variability and shape complexity. Sensitivity values for the three classes were 92.5%, 81.5% and 96.2% respectively, whereas specificity values were 94.2%, 95.3% and 95.5%. The AUC value achieved for the selected subset was 0.89 with 0.81 - 0.94 confidence interval. Conclusion: The proposed SVM system exhibit promising results that could be utilized as a second opinion tool to the radiologist in order to decrease the time/cost of diagnosis and the need for patients to undergo invasive examination.

Digital mammography: observer performance study of the effects of pixel size on radiologists' characterization of malignant and benign microcalcifications

NASA Astrophysics Data System (ADS)

Chan, Heang-Ping; Helvie, Mark A.; Petrick, Nicholas; Sahiner, Berkman; Adler, Dorit D.; Blane, Caroline E.; Joynt, Lynn K.; Paramagul, Chintana; Roubidoux, Marilyn A.; Wilson, Todd E.; Hadjiiski, Lubomir M.; Goodsitt, Mitchell M.

1999-05-01

A receiver operating characteristic (ROC) experiment was conducted to evaluate the effects of pixel size on the characterization of mammographic microcalcifications. Digital mammograms were obtained by digitizing screen-film mammograms with a laser film scanner. One hundred twelve two-view mammograms with biopsy-proven microcalcifications were digitized at a pixel size of 35 micrometer X 35 micrometer. A region of interest (ROI) containing the microcalcifications was extracted from each image. ROI images with pixel sizes of 70 micrometers, 105 micrometers, and 140 micrometers were derived from the ROI of 35 micrometer pixel size by averaging 2 X 2, 3 X 3, and 4 X 4 neighboring pixels, respectively. The ROI images were printed on film with a laser imager. Seven MQSA-approved radiologists participated as observers. The likelihood of malignancy of the microcalcifications was rated on a 10-point confidence rating scale and analyzed with ROC methodology. The classification accuracy was quantified by the area, Az, under the ROC curve. The statistical significance of the differences in the Az values for different pixel sizes was estimated with the Dorfman-Berbaum-Metz (DBM) method for multi-reader, multi-case ROC data. It was found that five of the seven radiologists demonstrated a higher classification accuracy with the 70 micrometer or 105 micrometer images. The average Az also showed a higher classification accuracy in the range of 70 to 105 micrometer pixel size. However, the differences in A(subscript z/ between different pixel sizes did not achieve statistical significance. The low specificity of image features of microcalcifications an the large interobserver and intraobserver variabilities may have contributed to the relatively weak dependence of classification accuracy on pixel size.

Parameterization of Shape and Compactness in Object-based Image Classification Using Quickbird-2 Imagery

NASA Astrophysics Data System (ADS)

Tonbul, H.; Kavzoglu, T.

2016-12-01

In recent years, object based image analysis (OBIA) has spread out and become a widely accepted technique for the analysis of remotely sensed data. OBIA deals with grouping pixels into homogenous objects based on spectral, spatial and textural features of contiguous pixels in an image. The first stage of OBIA, named as image segmentation, is the most prominent part of object recognition. In this study, multiresolution segmentation, which is a region-based approach, was employed to construct image objects. In the application of multi-resolution, three parameters, namely shape, compactness and scale must be set by the analyst. Segmentation quality remarkably influences the fidelity of the thematic maps and accordingly the classification accuracy. Therefore, it is of great importance to search and set optimal values for the segmentation parameters. In the literature, main focus has been on the definition of scale parameter, assuming that the effect of shape and compactness parameters is limited in terms of achieved classification accuracy. The aim of this study is to deeply analyze the influence of shape/compactness parameters by varying their values while using the optimal scale parameter determined by the use of Estimation of Scale Parameter (ESP-2) approach. A pansharpened Qickbird-2 image covering Trabzon, Turkey was employed to investigate the objectives of the study. For this purpose, six different combinations of shape/compactness were utilized to make deductions on the behavior of shape and compactness parameters and optimal setting for all parameters as a whole. Objects were assigned to classes using nearest neighbor classifier in all segmentation observations and equal number of pixels was randomly selected to calculate accuracy metrics. The highest overall accuracy (92.3%) was achieved by setting the shape/compactness criteria to 0.3/0.3. The results of this study indicate that shape/compactness parameters can have significant effect on classification accuracy with 4% change in overall accuracy. Also, statistical significance of differences in accuracy was tested using the McNemar's test and found that the difference between poor and optimal setting of shape/compactness parameters was statistically significant, suggesting a search for optimal parameterization instead of default setting.

VizieR Online Data Catalog: SDSS-DR8 galaxies classified by WND-CHARM (Kuminski+, 2016)

NASA Astrophysics Data System (ADS)

Kuminski, E.; Shamir, L.

2016-06-01

The image analysis method used to classify the images is WND-CHARM (wndchrm; Shamir et al. 2008, BMC Source Code for Biology and Medicine, 3: 13; 2010PLSCB...6E0974S; 2013ascl.soft12002S), which first computes 2885 numerical descriptors from each SDSS image such as textures, edges, shapes), the statistical distribution of the pixel intensities, the polynomial decomposition of the image, and fractal features. These features are extracted from the raw pixels, as well as the image transforms and multi-order image transforms. See section 2 for further explanations. In a similar way than the catalog we also compiled a catalog of all objects with spectra in DR8. For each object, that catalog contains the spec ObjID, the R.A., the decl., the z, z error, the certainty of classification as elliptical, the certainty of classification as spiral, and the certainty of classification as a star. See section 3.1 for further explanations. (2 data files).

Advances in multi-sensor data fusion: algorithms and applications.

PubMed

Dong, Jiang; Zhuang, Dafang; Huang, Yaohuan; Fu, Jingying

2009-01-01

With the development of satellite and remote sensing techniques, more and more image data from airborne/satellite sensors have become available. Multi-sensor image fusion seeks to combine information from different images to obtain more inferences than can be derived from a single sensor. In image-based application fields, image fusion has emerged as a promising research area since the end of the last century. The paper presents an overview of recent advances in multi-sensor satellite image fusion. Firstly, the most popular existing fusion algorithms are introduced, with emphasis on their recent improvements. Advances in main applications fields in remote sensing, including object identification, classification, change detection and maneuvering targets tracking, are described. Both advantages and limitations of those applications are then discussed. Recommendations are addressed, including: (1) Improvements of fusion algorithms; (2) Development of "algorithm fusion" methods; (3) Establishment of an automatic quality assessment scheme.

Increasing CAD system efficacy for lung texture analysis using a convolutional network

NASA Astrophysics Data System (ADS)

Tarando, Sebastian Roberto; Fetita, Catalin; Faccinetto, Alex; Brillet, Pierre-Yves

2016-03-01

The infiltrative lung diseases are a class of irreversible, non-neoplastic lung pathologies requiring regular follow-up with CT imaging. Quantifying the evolution of the patient status imposes the development of automated classification tools for lung texture. For the large majority of CAD systems, such classification relies on a two-dimensional analysis of axial CT images. In a previously developed CAD system, we proposed a fully-3D approach exploiting a multi-scale morphological analysis which showed good performance in detecting diseased areas, but with a major drawback consisting of sometimes overestimating the pathological areas and mixing different type of lung patterns. This paper proposes a combination of the existing CAD system with the classification outcome provided by a convolutional network, specifically tuned-up, in order to increase the specificity of the classification and the confidence to diagnosis. The advantage of using a deep learning approach is a better regularization of the classification output (because of a deeper insight into a given pathological class over a large series of samples) where the previous system is extra-sensitive due to the multi-scale response on patient-specific, localized patterns. In a preliminary evaluation, the combined approach was tested on a 10 patient database of various lung pathologies, showing a sharp increase of true detections.

A data set for evaluating the performance of multi-class multi-object video tracking

NASA Astrophysics Data System (ADS)

Chakraborty, Avishek; Stamatescu, Victor; Wong, Sebastien C.; Wigley, Grant; Kearney, David

2017-05-01

One of the challenges in evaluating multi-object video detection, tracking and classification systems is having publically available data sets with which to compare different systems. However, the measures of performance for tracking and classification are different. Data sets that are suitable for evaluating tracking systems may not be appropriate for classification. Tracking video data sets typically only have ground truth track IDs, while classification video data sets only have ground truth class-label IDs. The former identifies the same object over multiple frames, while the latter identifies the type of object in individual frames. This paper describes an advancement of the ground truth meta-data for the DARPA Neovision2 Tower data set to allow both the evaluation of tracking and classification. The ground truth data sets presented in this paper contain unique object IDs across 5 different classes of object (Car, Bus, Truck, Person, Cyclist) for 24 videos of 871 image frames each. In addition to the object IDs and class labels, the ground truth data also contains the original bounding box coordinates together with new bounding boxes in instances where un-annotated objects were present. The unique IDs are maintained during occlusions between multiple objects or when objects re-enter the field of view. This will provide: a solid foundation for evaluating the performance of multi-object tracking of different types of objects, a straightforward comparison of tracking system performance using the standard Multi Object Tracking (MOT) framework, and classification performance using the Neovision2 metrics. These data have been hosted publically.

Training sample selection based on self-training for liver cirrhosis classification using ultrasound images

NASA Astrophysics Data System (ADS)

Fujita, Yusuke; Mitani, Yoshihiro; Hamamoto, Yoshihiko; Segawa, Makoto; Terai, Shuji; Sakaida, Isao

2017-03-01

Ultrasound imaging is a popular and non-invasive tool used in the diagnoses of liver disease. Cirrhosis is a chronic liver disease and it can advance to liver cancer. Early detection and appropriate treatment are crucial to prevent liver cancer. However, ultrasound image analysis is very challenging, because of the low signal-to-noise ratio of ultrasound images. To achieve the higher classification performance, selection of training regions of interest (ROIs) is very important that effect to classification accuracy. The purpose of our study is cirrhosis detection with high accuracy using liver ultrasound images. In our previous works, training ROI selection by MILBoost and multiple-ROI classification based on the product rule had been proposed, to achieve high classification performance. In this article, we propose self-training method to select training ROIs effectively. Evaluation experiments were performed to evaluate effect of self-training, using manually selected ROIs and also automatically selected ROIs. Experimental results show that self-training for manually selected ROIs achieved higher classification performance than other approaches, including our conventional methods. The manually ROI definition and sample selection are important to improve classification accuracy in cirrhosis detection using ultrasound images.

Multi-categorical deep learning neural network to classify retinal images: A pilot study employing small database

PubMed Central

Seo, Jeong Gi; Kwak, Jiyong; Um, Terry Taewoong; Rim, Tyler Hyungtaek

2017-01-01

Deep learning emerges as a powerful tool for analyzing medical images. Retinal disease detection by using computer-aided diagnosis from fundus image has emerged as a new method. We applied deep learning convolutional neural network by using MatConvNet for an automated detection of multiple retinal diseases with fundus photographs involved in STructured Analysis of the REtina (STARE) database. Dataset was built by expanding data on 10 categories, including normal retina and nine retinal diseases. The optimal outcomes were acquired by using a random forest transfer learning based on VGG-19 architecture. The classification results depended greatly on the number of categories. As the number of categories increased, the performance of deep learning models was diminished. When all 10 categories were included, we obtained results with an accuracy of 30.5%, relative classifier information (RCI) of 0.052, and Cohen’s kappa of 0.224. Considering three integrated normal, background diabetic retinopathy, and dry age-related macular degeneration, the multi-categorical classifier showed accuracy of 72.8%, 0.283 RCI, and 0.577 kappa. In addition, several ensemble classifiers enhanced the multi-categorical classification performance. The transfer learning incorporated with ensemble classifier of clustering and voting approach presented the best performance with accuracy of 36.7%, 0.053 RCI, and 0.225 kappa in the 10 retinal diseases classification problem. First, due to the small size of datasets, the deep learning techniques in this study were ineffective to be applied in clinics where numerous patients suffering from various types of retinal disorders visit for diagnosis and treatment. Second, we found that the transfer learning incorporated with ensemble classifiers can improve the classification performance in order to detect multi-categorical retinal diseases. Further studies should confirm the effectiveness of algorithms with large datasets obtained from hospitals. PMID:29095872

Multi-scale learning based segmentation of glands in digital colonrectal pathology images.

PubMed

Gao, Yi; Liu, William; Arjun, Shipra; Zhu, Liangjia; Ratner, Vadim; Kurc, Tahsin; Saltz, Joel; Tannenbaum, Allen

2016-02-01

Digital histopathological images provide detailed spatial information of the tissue at micrometer resolution. Among the available contents in the pathology images, meso-scale information, such as the gland morphology, texture, and distribution, are useful diagnostic features. In this work, focusing on the colon-rectal cancer tissue samples, we propose a multi-scale learning based segmentation scheme for the glands in the colon-rectal digital pathology slides. The algorithm learns the gland and non-gland textures from a set of training images in various scales through a sparse dictionary representation. After the learning step, the dictionaries are used collectively to perform the classification and segmentation for the new image.

Multi-scale learning based segmentation of glands in digital colonrectal pathology images

NASA Astrophysics Data System (ADS)

Gao, Yi; Liu, William; Arjun, Shipra; Zhu, Liangjia; Ratner, Vadim; Kurc, Tahsin; Saltz, Joel; Tannenbaum, Allen

2016-03-01

Digital histopathological images provide detailed spatial information of the tissue at micrometer resolution. Among the available contents in the pathology images, meso-scale information, such as the gland morphology, texture, and distribution, are useful diagnostic features. In this work, focusing on the colon-rectal cancer tissue samples, we propose a multi-scale learning based segmentation scheme for the glands in the colon-rectal digital pathology slides. The algorithm learns the gland and non-gland textures from a set of training images in various scales through a sparse dictionary representation. After the learning step, the dictionaries are used collectively to perform the classification and segmentation for the new image.

Optimized color decomposition of localized whole slide images and convolutional neural network for intermediate prostate cancer classification

NASA Astrophysics Data System (ADS)

Zhou, Naiyun; Gao, Yi

2017-03-01

This paper presents a fully automatic approach to grade intermediate prostate malignancy with hematoxylin and eosin-stained whole slide images. Deep learning architectures such as convolutional neural networks have been utilized in the domain of histopathology for automated carcinoma detection and classification. However, few work show its power in discriminating intermediate Gleason patterns, due to sporadic distribution of prostate glands on stained surgical section samples. We propose optimized hematoxylin decomposition on localized images, followed by convolutional neural network to classify Gleason patterns 3+4 and 4+3 without handcrafted features or gland segmentation. Crucial glands morphology and structural relationship of nuclei are extracted twice in different color space by the multi-scale strategy to mimic pathologists' visual examination. Our novel classification scheme evaluated on 169 whole slide images yielded a 70.41% accuracy and corresponding area under the receiver operating characteristic curve of 0.7247.

Multi-class biological tissue classification based on a multi-classifier: Preliminary study of an automatic output power control for ultrasonic surgical units.

PubMed

Youn, Su Hyun; Sim, Taeyong; Choi, Ahnryul; Song, Jinsung; Shin, Ki Young; Lee, Il Kwon; Heo, Hyun Mu; Lee, Daeweon; Mun, Joung Hwan

2015-06-01

Ultrasonic surgical units (USUs) have the advantage of minimizing tissue damage during surgeries that require tissue dissection by reducing problems such as coagulation and unwanted carbonization, but the disadvantage of requiring manual adjustment of power output according to the target tissue. In order to overcome this limitation, it is necessary to determine the properties of in vivo tissues automatically. We propose a multi-classifier that can accurately classify tissues based on the unique impedance of each tissue. For this purpose, a multi-classifier was built based on single classifiers with high classification rates, and the classification accuracy of the proposed model was compared with that of single classifiers for various electrode types (Type-I: 6 mm invasive; Type-II: 3 mm invasive; Type-III: surface). The sensitivity and positive predictive value (PPV) of the multi-classifier by cross checks were determined. According to the 10-fold cross validation results, the classification accuracy of the proposed model was significantly higher (p<0.05 or <0.01) than that of existing single classifiers for all electrode types. In particular, the classification accuracy of the proposed model was highest when the 3mm invasive electrode (Type-II) was used (sensitivity=97.33-100.00%; PPV=96.71-100.00%). The results of this study are an important contribution to achieving automatic optimal output power adjustment of USUs according to the properties of individual tissues. Copyright © 2015 Elsevier Ltd. All rights reserved.

A signature dissimilarity measure for trabecular bone texture in knee radiographs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Woloszynski, T.; Podsiadlo, P.; Stachowiak, G. W.

Purpose: The purpose of this study is to develop a dissimilarity measure for the classification of trabecular bone (TB) texture in knee radiographs. Problems associated with the traditional extraction and selection of texture features and with the invariance to imaging conditions such as image size, anisotropy, noise, blur, exposure, magnification, and projection angle were addressed. Methods: In the method developed, called a signature dissimilarity measure (SDM), a sum of earth mover's distances calculated for roughness and orientation signatures is used to quantify dissimilarities between textures. Scale-space theory was used to ensure scale and rotation invariance. The effects of image size,more » anisotropy, noise, and blur on the SDM developed were studied using computer generated fractal texture images. The invariance of the measure to image exposure, magnification, and projection angle was studied using x-ray images of human tibia head. For the studies, Mann-Whitney tests with significance level of 0.01 were used. A comparison study between the performances of a SDM based classification system and other two systems in the classification of Brodatz textures and the detection of knee osteoarthritis (OA) were conducted. The other systems are based on weighted neighbor distance using compound hierarchy of algorithms representing morphology (WND-CHARM) and local binary patterns (LBP). Results: Results obtained indicate that the SDM developed is invariant to image exposure (2.5-30 mA s), magnification (x1.00-x1.35), noise associated with film graininess and quantum mottle (<25%), blur generated by a sharp film screen, and image size (>64x64 pixels). However, the measure is sensitive to changes in projection angle (>5 deg.), image anisotropy (>30 deg.), and blur generated by a regular film screen. For the classification of Brodatz textures, the SDM based system produced comparable results to the LBP system. For the detection of knee OA, the SDM based system achieved 78.8% classification accuracy and outperformed the WND-CHARM system (64.2%). Conclusions: The SDM is well suited for the classification of TB texture images in knee OA detection and may be useful for the texture classification of medical images in general.« less

Supervised fully polarimetric classification of the Black Forest test site: From MAESTROI to MAC Europe

NASA Technical Reports Server (NTRS)

Degrandi, G.; Lavalle, C.; Degroof, H.; Sieber, A.

1992-01-01

A study on the performance of a supervised fully polarimetric maximum likelihood classifier for synthetic aperture radar (SAR) data when applied to a specific classification context: forest classification based on age classes and in the presence of a sloping terrain is presented. For the experimental part, the polarimetric AIRSAR data at P, L, and C-band, acquired over the German Black Forest near Freiburg in the frame of the 1989 MAESTRO-1 campaign and the 1991 MAC Europe campaign was used, MAESTRO-1 with an ESA/JRC sponsored campaign, and MAC Europe (Multi-sensor Aircraft Campaign); in both cases the multi-frequency polarimetric JPL Airborne Synthetic Aperture Radar (AIRSAR) radar was flown over a number of European test sites. The study is structured as follows. At first, the general characteristics of the classifier and the dependencies from some parameters, like frequency bands, feature vector, calibration, using test areas lying on a flat terrain are investigated. Once it is determined the optimal conditions for the classifier performance, we then move on to the study of the slope effect. The bulk of this work is performed using the Maestrol data set. Next the classifier performance with the MAC Europe data is considered. The study is divided into two stages: first some of the tests done on the Maestro data are repeated, to highlight the improvements due to the new processing scheme that delivers 16 look data. Second we experiment with multi images classification with two goals: to assess the possibility of using a training set measured from one image to classify areas in different images; and to classify areas on critical slopes using different viewing angles. The main points of the study are listed and some of the results obtained so far are highlighted.

Deconvolution single shot multibox detector for supermarket commodity detection and classification

NASA Astrophysics Data System (ADS)

Li, Dejian; Li, Jian; Nie, Binling; Sun, Shouqian

2017-07-01

This paper proposes an image detection model to detect and classify supermarkets shelves' commodity. Based on the principle of the features directly affects the accuracy of the final classification, feature maps are performed to combine high level features with bottom level features. Then set some fixed anchors on those feature maps, finally the label and the position of commodity is generated by doing a box regression and classification. In this work, we proposed a model named Deconvolutiuon Single Shot MultiBox Detector, we evaluated the model using 300 images photographed from real supermarket shelves. Followed the same protocol in other recent methods, the results showed that our model outperformed other baseline methods.

Taxonomy of multi-focal nematode image stacks by a CNN based image fusion approach.

PubMed

Liu, Min; Wang, Xueping; Zhang, Hongzhong

2018-03-01

In the biomedical field, digital multi-focal images are very important for documentation and communication of specimen data, because the morphological information for a transparent specimen can be captured in form of a stack of high-quality images. Given biomedical image stacks containing multi-focal images, how to efficiently extract effective features from all layers to classify the image stacks is still an open question. We present to use a deep convolutional neural network (CNN) image fusion based multilinear approach for the taxonomy of multi-focal image stacks. A deep CNN based image fusion technique is used to combine relevant information of multi-focal images within a given image stack into a single image, which is more informative and complete than any single image in the given stack. Besides, multi-focal images within a stack are fused along 3 orthogonal directions, and multiple features extracted from the fused images along different directions are combined by canonical correlation analysis (CCA). Because multi-focal image stacks represent the effect of different factors - texture, shape, different instances within the same class and different classes of objects, we embed the deep CNN based image fusion method within a multilinear framework to propose an image fusion based multilinear classifier. The experimental results on nematode multi-focal image stacks demonstrated that the deep CNN image fusion based multilinear classifier can reach a higher classification rate (95.7%) than that by the previous multilinear based approach (88.7%), even we only use the texture feature instead of the combination of texture and shape features as in the previous work. The proposed deep CNN image fusion based multilinear approach shows great potential in building an automated nematode taxonomy system for nematologists. It is effective to classify multi-focal image stacks. Copyright © 2018 Elsevier B.V. All rights reserved.

Generating highly accurate prediction hypotheses through collaborative ensemble learning

NASA Astrophysics Data System (ADS)

Arsov, Nino; Pavlovski, Martin; Basnarkov, Lasko; Kocarev, Ljupco

2017-03-01

Ensemble generation is a natural and convenient way of achieving better generalization performance of learning algorithms by gathering their predictive capabilities. Here, we nurture the idea of ensemble-based learning by combining bagging and boosting for the purpose of binary classification. Since the former improves stability through variance reduction, while the latter ameliorates overfitting, the outcome of a multi-model that combines both strives toward a comprehensive net-balancing of the bias-variance trade-off. To further improve this, we alter the bagged-boosting scheme by introducing collaboration between the multi-model’s constituent learners at various levels. This novel stability-guided classification scheme is delivered in two flavours: during or after the boosting process. Applied among a crowd of Gentle Boost ensembles, the ability of the two suggested algorithms to generalize is inspected by comparing them against Subbagging and Gentle Boost on various real-world datasets. In both cases, our models obtained a 40% generalization error decrease. But their true ability to capture details in data was revealed through their application for protein detection in texture analysis of gel electrophoresis images. They achieve improved performance of approximately 0.9773 AUROC when compared to the AUROC of 0.9574 obtained by an SVM based on recursive feature elimination.

Best Merge Region Growing with Integrated Probabilistic Classification for Hyperspectral Imagery

NASA Technical Reports Server (NTRS)

Tarabalka, Yuliya; Tilton, James C.

2011-01-01

A new method for spectral-spatial classification of hyperspectral images is proposed. The method is based on the integration of probabilistic classification within the hierarchical best merge region growing algorithm. For this purpose, preliminary probabilistic support vector machines classification is performed. Then, hierarchical step-wise optimization algorithm is applied, by iteratively merging regions with the smallest Dissimilarity Criterion (DC). The main novelty of this method consists in defining a DC between regions as a function of region statistical and geometrical features along with classification probabilities. Experimental results are presented on a 200-band AVIRIS image of the Northwestern Indiana s vegetation area and compared with those obtained by recently proposed spectral-spatial classification techniques. The proposed method improves classification accuracies when compared to other classification approaches.

Classification of human carcinoma cells using multispectral imagery

NASA Astrophysics Data System (ADS)

Ćinar, Umut; Y. Ćetin, Yasemin; Ćetin-Atalay, Rengul; Ćetin, Enis

2016-03-01

In this paper, we present a technique for automatically classifying human carcinoma cell images using textural features. An image dataset containing microscopy biopsy images from different patients for 14 distinct cancer cell line type is studied. The images are captured using a RGB camera attached to an inverted microscopy device. Texture based Gabor features are extracted from multispectral input images. SVM classifier is used to generate a descriptive model for the purpose of cell line classification. The experimental results depict satisfactory performance, and the proposed method is versatile for various microscopy magnification options.

Multi-energy spectral CT: adding value in emergency body imaging.

PubMed

Punjabi, Gopal V

2018-04-01

Most vendors offer scanners capable of dual- or multi-energy computed tomography (CT) imaging. Advantages of multi-energy CT scanning include superior tissue characterization, detection of subtle iodine uptake differences, and opportunities to reduce contrast dose. However, utilization of this technology in the emergency department (ED) remains low. The purpose of this pictorial essay is to illustrate the value of multi-energy CT scanning in emergency body imaging.

A novel fruit shape classification method based on multi-scale analysis

NASA Astrophysics Data System (ADS)

Gui, Jiangsheng; Ying, Yibin; Rao, Xiuqin

2005-11-01

Shape is one of the major concerns and which is still a difficult problem in automated inspection and sorting of fruits. In this research, we proposed the multi-scale energy distribution (MSED) for object shape description, the relationship between objects shape and its boundary energy distribution at multi-scale was explored for shape extraction. MSED offers not only the mainly energy which represent primary shape information at the lower scales, but also subordinate energy which represent local shape information at higher differential scales. Thus, it provides a natural tool for multi resolution representation and can be used as a feature for shape classification. We addressed the three main processing steps in the MSED-based shape classification. They are namely, 1) image preprocessing and citrus shape extraction, 2) shape resample and shape feature normalization, 3) energy decomposition by wavelet and classification by BP neural network. Hereinto, shape resample is resample 256 boundary pixel from a curve which is approximated original boundary by using cubic spline in order to get uniform raw data. A probability function was defined and an effective method to select a start point was given through maximal expectation, which overcame the inconvenience of traditional methods in order to have a property of rotation invariants. The experiment result is relatively well normal citrus and serious abnormality, with a classification rate superior to 91.2%. The global correct classification rate is 89.77%, and our method is more effective than traditional method. The global result can meet the request of fruit grading.

Real-time ultrasound image classification for spine anesthesia using local directional Hadamard features.

PubMed

Pesteie, Mehran; Abolmaesumi, Purang; Ashab, Hussam Al-Deen; Lessoway, Victoria A; Massey, Simon; Gunka, Vit; Rohling, Robert N

2015-06-01

Injection therapy is a commonly used solution for back pain management. This procedure typically involves percutaneous insertion of a needle between or around the vertebrae, to deliver anesthetics near nerve bundles. Most frequently, spinal injections are performed either blindly using palpation or under the guidance of fluoroscopy or computed tomography. Recently, due to the drawbacks of the ionizing radiation of such imaging modalities, there has been a growing interest in using ultrasound imaging as an alternative. However, the complex spinal anatomy with different wave-like structures, affected by speckle noise, makes the accurate identification of the appropriate injection plane difficult. The aim of this study was to propose an automated system that can identify the optimal plane for epidural steroid injections and facet joint injections. A multi-scale and multi-directional feature extraction system to provide automated identification of the appropriate plane is proposed. Local Hadamard coefficients are obtained using the sequency-ordered Hadamard transform at multiple scales. Directional features are extracted from local coefficients which correspond to different regions in the ultrasound images. An artificial neural network is trained based on the local directional Hadamard features for classification. The proposed method yields distinctive features for classification which successfully classified 1032 images out of 1090 for epidural steroid injection and 990 images out of 1052 for facet joint injection. In order to validate the proposed method, a leave-one-out cross-validation was performed. The average classification accuracy for leave-one-out validation was 94 % for epidural and 90 % for facet joint targets. Also, the feature extraction time for the proposed method was 20 ms for a native 2D ultrasound image. A real-time machine learning system based on the local directional Hadamard features extracted by the sequency-ordered Hadamard transform for detecting the laminae and facet joints in ultrasound images has been proposed. The system has the potential to assist the anesthesiologists in quickly finding the target plane for epidural steroid injections and facet joint injections.

Remote sensing based detection of forested wetlands: An evaluation of LiDAR, aerial imagery, and their data fusion

NASA Astrophysics Data System (ADS)

Suiter, Ashley Elizabeth

Multi-spectral imagery provides a robust and low-cost dataset for assessing wetland extent and quality over broad regions and is frequently used for wetland inventories. However in forested wetlands, hydrology is obscured by tree canopy making it difficult to detect with multi-spectral imagery alone. Because of this, classification of forested wetlands often includes greater errors than that of other wetlands types. Elevation and terrain derivatives have been shown to be useful for modelling wetland hydrology. But, few studies have addressed the use of LiDAR intensity data detecting hydrology in forested wetlands. Due the tendency of LiDAR signal to be attenuated by water, this research proposed the fusion of LiDAR intensity data with LiDAR elevation, terrain data, and aerial imagery, for the detection of forested wetland hydrology. We examined the utility of LiDAR intensity data and determined whether the fusion of Lidar derived data with multispectral imagery increased the accuracy of forested wetland classification compared with a classification performed with only multi-spectral image. Four classifications were performed: Classification A -- All Imagery, Classification B -- All LiDAR, Classification C -- LiDAR without Intensity, and Classification D -- Fusion of All Data. These classifications were performed using random forest and each resulted in a 3-foot resolution thematic raster of forested upland and forested wetland locations in Vermilion County, Illinois. The accuracies of these classifications were compared using Kappa Coefficient of Agreement. Importance statistics produced within the random forest classifier were evaluated in order to understand the contribution of individual datasets. Classification D, which used the fusion of LiDAR and multi-spectral imagery as input variables, had moderate to strong agreement between reference data and classification results. It was found that Classification A performed using all the LiDAR data and its derivatives (intensity, elevation, slope, aspect, curvatures, and Topographic Wetness Index) was the most accurate classification with Kappa: 78.04%, indicating moderate to strong agreement. However, Classification C, performed with LiDAR derivative without intensity data had less agreement than would be expected by chance, indicating that LiDAR contributed significantly to the accuracy of Classification B.

Effect of conductance linearity and multi-level cell characteristics of TaOx-based synapse device on pattern recognition accuracy of neuromorphic system

NASA Astrophysics Data System (ADS)

Sung, Changhyuck; Lim, Seokjae; Kim, Hyungjun; Kim, Taesu; Moon, Kibong; Song, Jeonghwan; Kim, Jae-Joon; Hwang, Hyunsang

2018-03-01

To improve the classification accuracy of an image data set (CIFAR-10) by using analog input voltage, synapse devices with excellent conductance linearity (CL) and multi-level cell (MLC) characteristics are required. We analyze the CL and MLC characteristics of TaOx-based filamentary resistive random access memory (RRAM) to implement the synapse device in neural network hardware. Our findings show that the number of oxygen vacancies in the filament constriction region of the RRAM directly controls the CL and MLC characteristics. By adopting a Ta electrode (instead of Ti) and the hot-forming step, we could form a dense conductive filament. As a result, a wide range of conductance levels with CL is achieved and significantly improved image classification accuracy is confirmed.

Buildings Change Detection Based on Shape Matching for Multi-Resolution Remote Sensing Imagery

NASA Astrophysics Data System (ADS)

Abdessetar, M.; Zhong, Y.

2017-09-01

Buildings change detection has the ability to quantify the temporal effect, on urban area, for urban evolution study or damage assessment in disaster cases. In this context, changes analysis might involve the utilization of the available satellite images with different resolutions for quick responses. In this paper, to avoid using traditional method with image resampling outcomes and salt-pepper effect, building change detection based on shape matching is proposed for multi-resolution remote sensing images. Since the object's shape can be extracted from remote sensing imagery and the shapes of corresponding objects in multi-scale images are similar, it is practical for detecting buildings changes in multi-scale imagery using shape analysis. Therefore, the proposed methodology can deal with different pixel size for identifying new and demolished buildings in urban area using geometric properties of objects of interest. After rectifying the desired multi-dates and multi-resolutions images, by image to image registration with optimal RMS value, objects based image classification is performed to extract buildings shape from the images. Next, Centroid-Coincident Matching is conducted, on the extracted building shapes, based on the Euclidean distance measurement between shapes centroid (from shape T0 to shape T1 and vice versa), in order to define corresponding building objects. Then, New and Demolished buildings are identified based on the obtained distances those are greater than RMS value (No match in the same location).

Justification of Fuzzy Declustering Vector Quantization Modeling in Classification of Genotype-Image Phenotypes

NASA Astrophysics Data System (ADS)

Ng, Theam Foo; Pham, Tuan D.; Zhou, Xiaobo

2010-01-01

With the fast development of multi-dimensional data compression and pattern classification techniques, vector quantization (VQ) has become a system that allows large reduction of data storage and computational effort. One of the most recent VQ techniques that handle the poor estimation of vector centroids due to biased data from undersampling is to use fuzzy declustering-based vector quantization (FDVQ) technique. Therefore, in this paper, we are motivated to propose a justification of FDVQ based hidden Markov model (HMM) for investigating its effectiveness and efficiency in classification of genotype-image phenotypes. The performance evaluation and comparison of the recognition accuracy between a proposed FDVQ based HMM (FDVQ-HMM) and a well-known LBG (Linde, Buzo, Gray) vector quantization based HMM (LBG-HMM) will be carried out. The experimental results show that the performances of both FDVQ-HMM and LBG-HMM are almost similar. Finally, we have justified the competitiveness of FDVQ-HMM in classification of cellular phenotype image database by using hypotheses t-test. As a result, we have validated that the FDVQ algorithm is a robust and an efficient classification technique in the application of RNAi genome-wide screening image data.

a Rough Set Decision Tree Based Mlp-Cnn for Very High Resolution Remotely Sensed Image Classification

NASA Astrophysics Data System (ADS)

Zhang, C.; Pan, X.; Zhang, S. Q.; Li, H. P.; Atkinson, P. M.

2017-09-01

Recent advances in remote sensing have witnessed a great amount of very high resolution (VHR) images acquired at sub-metre spatial resolution. These VHR remotely sensed data has post enormous challenges in processing, analysing and classifying them effectively due to the high spatial complexity and heterogeneity. Although many computer-aid classification methods that based on machine learning approaches have been developed over the past decades, most of them are developed toward pixel level spectral differentiation, e.g. Multi-Layer Perceptron (MLP), which are unable to exploit abundant spatial details within VHR images. This paper introduced a rough set model as a general framework to objectively characterize the uncertainty in CNN classification results, and further partition them into correctness and incorrectness on the map. The correct classification regions of CNN were trusted and maintained, whereas the misclassification areas were reclassified using a decision tree with both CNN and MLP. The effectiveness of the proposed rough set decision tree based MLP-CNN was tested using an urban area at Bournemouth, United Kingdom. The MLP-CNN, well capturing the complementarity between CNN and MLP through the rough set based decision tree, achieved the best classification performance both visually and numerically. Therefore, this research paves the way to achieve fully automatic and effective VHR image classification.

Singular spectrum decomposition of Bouligand-Minkowski fractal descriptors: an application to the classification of texture Images

NASA Astrophysics Data System (ADS)

Florindo, João. Batista

2018-04-01

This work proposes the use of Singular Spectrum Analysis (SSA) for the classification of texture images, more specifically, to enhance the performance of the Bouligand-Minkowski fractal descriptors in this task. Fractal descriptors are known to be a powerful approach to model and particularly identify complex patterns in natural images. Nevertheless, the multiscale analysis involved in those descriptors makes them highly correlated. Although other attempts to address this point was proposed in the literature, none of them investigated the relation between the fractal correlation and the well-established analysis employed in time series. And SSA is one of the most powerful techniques for this purpose. The proposed method was employed for the classification of benchmark texture images and the results were compared with other state-of-the-art classifiers, confirming the potential of this analysis in image classification.

A comparison of autonomous techniques for multispectral image analysis and classification

NASA Astrophysics Data System (ADS)

Valdiviezo-N., Juan C.; Urcid, Gonzalo; Toxqui-Quitl, Carina; Padilla-Vivanco, Alfonso

2012-10-01

Multispectral imaging has given place to important applications related to classification and identification of objects from a scene. Because of multispectral instruments can be used to estimate the reflectance of materials in the scene, these techniques constitute fundamental tools for materials analysis and quality control. During the last years, a variety of algorithms has been developed to work with multispectral data, whose main purpose has been to perform the correct classification of the objects in the scene. The present study introduces a brief review of some classical as well as a novel technique that have been used for such purposes. The use of principal component analysis and K-means clustering techniques as important classification algorithms is here discussed. Moreover, a recent method based on the min-W and max-M lattice auto-associative memories, that was proposed for endmember determination in hyperspectral imagery, is introduced as a classification method. Besides a discussion of their mathematical foundation, we emphasize their main characteristics and the results achieved for two exemplar images conformed by objects similar in appearance, but spectrally different. The classification results state that the first components computed from principal component analysis can be used to highlight areas with different spectral characteristics. In addition, the use of lattice auto-associative memories provides good results for materials classification even in the cases where some spectral similarities appears in their spectral responses.

A transversal approach for patch-based label fusion via matrix completion

PubMed Central

Sanroma, Gerard; Wu, Guorong; Gao, Yaozong; Thung, Kim-Han; Guo, Yanrong; Shen, Dinggang

2015-01-01

Recently, multi-atlas patch-based label fusion has received an increasing interest in the medical image segmentation field. After warping the anatomical labels from the atlas images to the target image by registration, label fusion is the key step to determine the latent label for each target image point. Two popular types of patch-based label fusion approaches are (1) reconstruction-based approaches that compute the target labels as a weighted average of atlas labels, where the weights are derived by reconstructing the target image patch using the atlas image patches; and (2) classification-based approaches that determine the target label as a mapping of the target image patch, where the mapping function is often learned using the atlas image patches and their corresponding labels. Both approaches have their advantages and limitations. In this paper, we propose a novel patch-based label fusion method to combine the above two types of approaches via matrix completion (and hence, we call it transversal). As we will show, our method overcomes the individual limitations of both reconstruction-based and classification-based approaches. Since the labeling confidences may vary across the target image points, we further propose a sequential labeling framework that first labels the highly confident points and then gradually labels more challenging points in an iterative manner, guided by the label information determined in the previous iterations. We demonstrate the performance of our novel label fusion method in segmenting the hippocampus in the ADNI dataset, subcortical and limbic structures in the LONI dataset, and mid-brain structures in the SATA dataset. We achieve more accurate segmentation results than both reconstruction-based and classification-based approaches. Our label fusion method is also ranked 1st in the online SATA Multi-Atlas Segmentation Challenge. PMID:26160394

Random Forest Algorithm for the Classification of Neuroimaging Data in Alzheimer's Disease: A Systematic Review.

PubMed

Sarica, Alessia; Cerasa, Antonio; Quattrone, Aldo

2017-01-01

Objective: Machine learning classification has been the most important computational development in the last years to satisfy the primary need of clinicians for automatic early diagnosis and prognosis. Nowadays, Random Forest (RF) algorithm has been successfully applied for reducing high dimensional and multi-source data in many scientific realms. Our aim was to explore the state of the art of the application of RF on single and multi-modal neuroimaging data for the prediction of Alzheimer's disease. Methods: A systematic review following PRISMA guidelines was conducted on this field of study. In particular, we constructed an advanced query using boolean operators as follows: ("random forest" OR "random forests") AND neuroimaging AND ("alzheimer's disease" OR alzheimer's OR alzheimer) AND (prediction OR classification) . The query was then searched in four well-known scientific databases: Pubmed, Scopus, Google Scholar and Web of Science. Results: Twelve articles-published between the 2007 and 2017-have been included in this systematic review after a quantitative and qualitative selection. The lesson learnt from these works suggest that when RF was applied on multi-modal data for prediction of Alzheimer's disease (AD) conversion from the Mild Cognitive Impairment (MCI), it produces one of the best accuracies to date. Moreover, the RF has important advantages in terms of robustness to overfitting, ability to handle highly non-linear data, stability in the presence of outliers and opportunity for efficient parallel processing mainly when applied on multi-modality neuroimaging data, such as, MRI morphometric, diffusion tensor imaging, and PET images. Conclusions: We discussed the strengths of RF, considering also possible limitations and by encouraging further studies on the comparisons of this algorithm with other commonly used classification approaches, particularly in the early prediction of the progression from MCI to AD.

Cupping artifact correction and automated classification for high-resolution dedicated breast CT images

PubMed Central

Yang, Xiaofeng; Wu, Shengyong; Sechopoulos, Ioannis; Fei, Baowei

2012-01-01

Purpose: To develop and test an automated algorithm to classify the different tissues present in dedicated breast CT images. Methods: The original CT images are first corrected to overcome cupping artifacts, and then a multiscale bilateral filter is used to reduce noise while keeping edge information on the images. As skin and glandular tissues have similar CT values on breast CT images, morphologic processing is used to identify the skin mask based on its position information. A modified fuzzy C-means (FCM) classification method is then used to classify breast tissue as fat and glandular tissue. By combining the results of the skin mask with the FCM, the breast tissue is classified as skin, fat, and glandular tissue. To evaluate the authors’ classification method, the authors use Dice overlap ratios to compare the results of the automated classification to those obtained by manual segmentation on eight patient images. Results: The correction method was able to correct the cupping artifacts and improve the quality of the breast CT images. For glandular tissue, the overlap ratios between the authors’ automatic classification and manual segmentation were 91.6% ± 2.0%. Conclusions: A cupping artifact correction method and an automatic classification method were applied and evaluated for high-resolution dedicated breast CT images. Breast tissue classification can provide quantitative measurements regarding breast composition, density, and tissue distribution. PMID:23039675

Machine vision based quality inspection of flat glass products

NASA Astrophysics Data System (ADS)

Zauner, G.; Schagerl, M.

2014-03-01

This application paper presents a machine vision solution for the quality inspection of flat glass products. A contact image sensor (CIS) is used to generate digital images of the glass surfaces. The presented machine vision based quality inspection at the end of the production line aims to classify five different glass defect types. The defect images are usually characterized by very little `image structure', i.e. homogeneous regions without distinct image texture. Additionally, these defect images usually consist of only a few pixels. At the same time the appearance of certain defect classes can be very diverse (e.g. water drops). We used simple state-of-the-art image features like histogram-based features (std. deviation, curtosis, skewness), geometric features (form factor/elongation, eccentricity, Hu-moments) and texture features (grey level run length matrix, co-occurrence matrix) to extract defect information. The main contribution of this work now lies in the systematic evaluation of various machine learning algorithms to identify appropriate classification approaches for this specific class of images. In this way, the following machine learning algorithms were compared: decision tree (J48), random forest, JRip rules, naive Bayes, Support Vector Machine (multi class), neural network (multilayer perceptron) and k-Nearest Neighbour. We used a representative image database of 2300 defect images and applied cross validation for evaluation purposes.

Snapshot Serengeti, high-frequency annotated camera trap images of 40 mammalian species in an African savanna

PubMed Central

Swanson, Alexandra; Kosmala, Margaret; Lintott, Chris; Simpson, Robert; Smith, Arfon; Packer, Craig

2015-01-01

Camera traps can be used to address large-scale questions in community ecology by providing systematic data on an array of wide-ranging species. We deployed 225 camera traps across 1,125 km2 in Serengeti National Park, Tanzania, to evaluate spatial and temporal inter-species dynamics. The cameras have operated continuously since 2010 and had accumulated 99,241 camera-trap days and produced 1.2 million sets of pictures by 2013. Members of the general public classified the images via the citizen-science website www.snapshotserengeti.org. Multiple users viewed each image and recorded the species, number of individuals, associated behaviours, and presence of young. Over 28,000 registered users contributed 10.8 million classifications. We applied a simple algorithm to aggregate these individual classifications into a final ‘consensus’ dataset, yielding a final classification for each image and a measure of agreement among individual answers. The consensus classifications and raw imagery provide an unparalleled opportunity to investigate multi-species dynamics in an intact ecosystem and a valuable resource for machine-learning and computer-vision research. PMID:26097743

Reducing uncertainty on satellite image classification through spatiotemporal reasoning

NASA Astrophysics Data System (ADS)

Partsinevelos, Panagiotis; Nikolakaki, Natassa; Psillakis, Periklis; Miliaresis, George; Xanthakis, Michail

2014-05-01

The natural habitat constantly endures both inherent natural and human-induced influences. Remote sensing has been providing monitoring oriented solutions regarding the natural Earth surface, by offering a series of tools and methodologies which contribute to prudent environmental management. Processing and analysis of multi-temporal satellite images for the observation of the land changes include often classification and change-detection techniques. These error prone procedures are influenced mainly by the distinctive characteristics of the study areas, the remote sensing systems limitations and the image analysis processes. The present study takes advantage of the temporal continuity of multi-temporal classified images, in order to reduce classification uncertainty, based on reasoning rules. More specifically, pixel groups that temporally oscillate between classes are liable to misclassification or indicate problematic areas. On the other hand, constant pixel group growth indicates a pressure prone area. Computational tools are developed in order to disclose the alterations in land use dynamics and offer a spatial reference to the pressures that land use classes endure and impose between them. Moreover, by revealing areas that are susceptible to misclassification, we propose specific target site selection for training during the process of supervised classification. The underlying objective is to contribute to the understanding and analysis of anthropogenic and environmental factors that influence land use changes. The developed algorithms have been tested upon Landsat satellite image time series, depicting the National Park of Ainos in Kefallinia, Greece, where the unique in the world Abies cephalonica grows. Along with the minor changes and pressures indicated in the test area due to harvesting and other human interventions, the developed algorithms successfully captured fire incidents that have been historically confirmed. Overall, the results have shown that the use of the suggested procedures can contribute to the reduction of the classification uncertainty and support the existing knowledge regarding the pressure among land-use changes.

A Directed Acyclic Graph-Large Margin Distribution Machine Model for Music Symbol Classification

PubMed Central

Wen, Cuihong; Zhang, Jing; Rebelo, Ana; Cheng, Fanyong

2016-01-01

Optical Music Recognition (OMR) has received increasing attention in recent years. In this paper, we propose a classifier based on a new method named Directed Acyclic Graph-Large margin Distribution Machine (DAG-LDM). The DAG-LDM is an improvement of the Large margin Distribution Machine (LDM), which is a binary classifier that optimizes the margin distribution by maximizing the margin mean and minimizing the margin variance simultaneously. We modify the LDM to the DAG-LDM to solve the multi-class music symbol classification problem. Tests are conducted on more than 10000 music symbol images, obtained from handwritten and printed images of music scores. The proposed method provides superior classification capability and achieves much higher classification accuracy than the state-of-the-art algorithms such as Support Vector Machines (SVMs) and Neural Networks (NNs). PMID:26985826

A Directed Acyclic Graph-Large Margin Distribution Machine Model for Music Symbol Classification.

PubMed

Wen, Cuihong; Zhang, Jing; Rebelo, Ana; Cheng, Fanyong

2016-01-01

Optical Music Recognition (OMR) has received increasing attention in recent years. In this paper, we propose a classifier based on a new method named Directed Acyclic Graph-Large margin Distribution Machine (DAG-LDM). The DAG-LDM is an improvement of the Large margin Distribution Machine (LDM), which is a binary classifier that optimizes the margin distribution by maximizing the margin mean and minimizing the margin variance simultaneously. We modify the LDM to the DAG-LDM to solve the multi-class music symbol classification problem. Tests are conducted on more than 10000 music symbol images, obtained from handwritten and printed images of music scores. The proposed method provides superior classification capability and achieves much higher classification accuracy than the state-of-the-art algorithms such as Support Vector Machines (SVMs) and Neural Networks (NNs).

Mapping grass communities based on multi-temporal Landsat TM imagery and environmental variables

NASA Astrophysics Data System (ADS)

Zeng, Yuandi; Liu, Yanfang; Liu, Yaolin; de Leeuw, Jan

2007-06-01

Information on the spatial distribution of grass communities in wetland is increasingly recognized as important for effective wetland management and biological conservation. Remote sensing techniques has been proved to be an effective alternative to intensive and costly ground surveys for mapping grass community. However, the mapping accuracy of grass communities in wetland is still not preferable. The aim of this paper is to develop an effective method to map grass communities in Poyang Lake Natural Reserve. Through statistic analysis, elevation is selected as an environmental variable for its high relationship with the distribution of grass communities; NDVI stacked from images of different months was used to generate Carex community map; the image in October was used to discriminate Miscanthus and Cynodon communities. Classifications were firstly performed with maximum likelihood classifier using single date satellite image with and without elevation; then layered classifications were performed using multi-temporal satellite imagery and elevation with maximum likelihood classifier, decision tree and artificial neural network separately. The results show that environmental variables can improve the mapping accuracy; and the classification with multitemporal imagery and elevation is significantly better than that with single date image and elevation (p=0.001). Besides, maximum likelihood (a=92.71%, k=0.90) and artificial neural network (a=94.79%, k=0.93) perform significantly better than decision tree (a=86.46%, k=0.83).

Beam-hardening correction by a surface fitting and phase classification by a least square support vector machine approach for tomography images of geological samples

NASA Astrophysics Data System (ADS)

Khan, F.; Enzmann, F.; Kersten, M.

2015-12-01

In X-ray computed microtomography (μXCT) image processing is the most important operation prior to image analysis. Such processing mainly involves artefact reduction and image segmentation. We propose a new two-stage post-reconstruction procedure of an image of a geological rock core obtained by polychromatic cone-beam μXCT technology. In the first stage, the beam-hardening (BH) is removed applying a best-fit quadratic surface algorithm to a given image data set (reconstructed slice), which minimizes the BH offsets of the attenuation data points from that surface. The final BH-corrected image is extracted from the residual data, or the difference between the surface elevation values and the original grey-scale values. For the second stage, we propose using a least square support vector machine (a non-linear classifier algorithm) to segment the BH-corrected data as a pixel-based multi-classification task. A combination of the two approaches was used to classify a complex multi-mineral rock sample. The Matlab code for this approach is provided in the Appendix. A minor drawback is that the proposed segmentation algorithm may become computationally demanding in the case of a high dimensional training data set.

Multi-temporal Land Use Mapping of Coastal Wetlands Area using Machine Learning in Google Earth Engine

NASA Astrophysics Data System (ADS)

Farda, N. M.

2017-12-01

Coastal wetlands provide ecosystem services essential to people and the environment. Changes in coastal wetlands, especially on land use, are important to monitor by utilizing multi-temporal imagery. The Google Earth Engine (GEE) provides many machine learning algorithms (10 algorithms) that are very useful for extracting land use from imagery. The research objective is to explore machine learning in Google Earth Engine and its accuracy for multi-temporal land use mapping of coastal wetland area. Landsat 3 MSS (1978), Landsat 5 TM (1991), Landsat 7 ETM+ (2001), and Landsat 8 OLI (2014) images located in Segara Anakan lagoon are selected to represent multi temporal images. The input for machine learning are visible and near infrared bands, PCA band, invers PCA bands, bare soil index, vegetation index, wetness index, elevation from ASTER GDEM, and GLCM (Harralick) texture, and also polygon samples in 140 locations. There are 10 machine learning algorithms applied to extract coastal wetlands land use from Landsat imagery. The algorithms are Fast Naive Bayes, CART (Classification and Regression Tree), Random Forests, GMO Max Entropy, Perceptron (Multi Class Perceptron), Winnow, Voting SVM, Margin SVM, Pegasos (Primal Estimated sub-GrAdient SOlver for Svm), IKPamir (Intersection Kernel Passive Aggressive Method for Information Retrieval, SVM). Machine learning in Google Earth Engine are very helpful in multi-temporal land use mapping, the highest accuracy for land use mapping of coastal wetland is CART with 96.98 % Overall Accuracy using K-Fold Cross Validation (K = 10). GEE is particularly useful for multi-temporal land use mapping with ready used image and classification algorithms, and also very challenging for other applications.

Identifying Autism from Resting-State fMRI Using Long Short-Term Memory Networks.

PubMed

Dvornek, Nicha C; Ventola, Pamela; Pelphrey, Kevin A; Duncan, James S

2017-09-01

Functional magnetic resonance imaging (fMRI) has helped characterize the pathophysiology of autism spectrum disorders (ASD) and carries promise for producing objective biomarkers for ASD. Recent work has focused on deriving ASD biomarkers from resting-state functional connectivity measures. However, current efforts that have identified ASD with high accuracy were limited to homogeneous, small datasets, while classification results for heterogeneous, multi-site data have shown much lower accuracy. In this paper, we propose the use of recurrent neural networks with long short-term memory (LSTMs) for classification of individuals with ASD and typical controls directly from the resting-state fMRI time-series. We used the entire large, multi-site Autism Brain Imaging Data Exchange (ABIDE) I dataset for training and testing the LSTM models. Under a cross-validation framework, we achieved classification accuracy of 68.5%, which is 9% higher than previously reported methods that used fMRI data from the whole ABIDE cohort. Finally, we presented interpretation of the trained LSTM weights, which highlight potential functional networks and regions that are known to be implicated in ASD.

Identifying Autism from Resting-State fMRI Using Long Short-Term Memory Networks

PubMed Central

Dvornek, Nicha C.; Ventola, Pamela; Pelphrey, Kevin A.; Duncan, James S.

2017-01-01

Functional magnetic resonance imaging (fMRI) has helped characterize the pathophysiology of autism spectrum disorders (ASD) and carries promise for producing objective biomarkers for ASD. Recent work has focused on deriving ASD biomarkers from resting-state functional connectivity measures. However, current efforts that have identified ASD with high accuracy were limited to homogeneous, small datasets, while classification results for heterogeneous, multi-site data have shown much lower accuracy. In this paper, we propose the use of recurrent neural networks with long short-term memory (LSTMs) for classification of individuals with ASD and typical controls directly from the resting-state fMRI time-series. We used the entire large, multi-site Autism Brain Imaging Data Exchange (ABIDE) I dataset for training and testing the LSTM models. Under a cross-validation framework, we achieved classification accuracy of 68.5%, which is 9% higher than previously reported methods that used fMRI data from the whole ABIDE cohort. Finally, we presented interpretation of the trained LSTM weights, which highlight potential functional networks and regions that are known to be implicated in ASD. PMID:29104967

Spectral multi-energy CT texture analysis with machine learning for tissue classification: an investigation using classification of benign parotid tumours as a testing paradigm.

PubMed

Al Ajmi, Eiman; Forghani, Behzad; Reinhold, Caroline; Bayat, Maryam; Forghani, Reza

2018-06-01

There is a rich amount of quantitative information in spectral datasets generated from dual-energy CT (DECT). In this study, we compare the performance of texture analysis performed on multi-energy datasets to that of virtual monochromatic images (VMIs) at 65 keV only, using classification of the two most common benign parotid neoplasms as a testing paradigm. Forty-two patients with pathologically proven Warthin tumour (n = 25) or pleomorphic adenoma (n = 17) were evaluated. Texture analysis was performed on VMIs ranging from 40 to 140 keV in 5-keV increments (multi-energy analysis) or 65-keV VMIs only, which is typically considered equivalent to single-energy CT. Random forest (RF) models were constructed for outcome prediction using separate randomly selected training and testing sets or the entire patient set. Using multi-energy texture analysis, tumour classification in the independent testing set had accuracy, sensitivity, specificity, positive predictive value, and negative predictive value of 92%, 86%, 100%, 100%, and 83%, compared to 75%, 57%, 100%, 100%, and 63%, respectively, for single-energy analysis. Multi-energy texture analysis demonstrates superior performance compared to single-energy texture analysis of VMIs at 65 keV for classification of benign parotid tumours. • We present and validate a paradigm for texture analysis of DECT scans. • Multi-energy dataset texture analysis is superior to single-energy dataset texture analysis. • DECT texture analysis has high accura\\cy for diagnosis of benign parotid tumours. • DECT texture analysis with machine learning can enhance non-invasive diagnostic tumour evaluation.

Land classification of south-central Iowa from computer enhanced images

NASA Technical Reports Server (NTRS)

Lucas, J. R. (Principal Investigator); Taranik, J. V.; Billingsley, F. C.

1976-01-01

The author has identified the following significant results. The Iowa Geological Survey developed its own capability for producing color products from digitally enhanced LANDSAT data. Research showed that efficient production of enhanced images required full utilization of both computer and photographic enhancement procedures. The 29 August 1972 photo-optically enhanced color composite was more easily interpreted for land classification purposes than standard color composites.

Multi-channel MRI segmentation with graph cuts using spectral gradient and multidimensional Gaussian mixture model

NASA Astrophysics Data System (ADS)

Lecoeur, Jérémy; Ferré, Jean-Christophe; Collins, D. Louis; Morrisey, Sean P.; Barillot, Christian

2009-02-01

A new segmentation framework is presented taking advantage of multimodal image signature of the different brain tissues (healthy and/or pathological). This is achieved by merging three different modalities of gray-level MRI sequences into a single RGB-like MRI, hence creating a unique 3-dimensional signature for each tissue by utilising the complementary information of each MRI sequence. Using the scale-space spectral gradient operator, we can obtain a spatial gradient robust to intensity inhomogeneity. Even though it is based on psycho-visual color theory, it can be very efficiently applied to the RGB colored images. More over, it is not influenced by the channel assigment of each MRI. Its optimisation by the graph cuts paradigm provides a powerful and accurate tool to segment either healthy or pathological tissues in a short time (average time about ninety seconds for a brain-tissues classification). As it is a semi-automatic method, we run experiments to quantify the amount of seeds needed to perform a correct segmentation (dice similarity score above 0.85). Depending on the different sets of MRI sequences used, this amount of seeds (expressed as a relative number in pourcentage of the number of voxels of the ground truth) is between 6 to 16%. We tested this algorithm on brainweb for validation purpose (healthy tissue classification and MS lesions segmentation) and also on clinical data for tumours and MS lesions dectection and tissues classification.

A multi-scale convolutional neural network for phenotyping high-content cellular images.

PubMed

Godinez, William J; Hossain, Imtiaz; Lazic, Stanley E; Davies, John W; Zhang, Xian

2017-07-01

Identifying phenotypes based on high-content cellular images is challenging. Conventional image analysis pipelines for phenotype identification comprise multiple independent steps, with each step requiring method customization and adjustment of multiple parameters. Here, we present an approach based on a multi-scale convolutional neural network (M-CNN) that classifies, in a single cohesive step, cellular images into phenotypes by using directly and solely the images' pixel intensity values. The only parameters in the approach are the weights of the neural network, which are automatically optimized based on training images. The approach requires no a priori knowledge or manual customization, and is applicable to single- or multi-channel images displaying single or multiple cells. We evaluated the classification performance of the approach on eight diverse benchmark datasets. The approach yielded overall a higher classification accuracy compared with state-of-the-art results, including those of other deep CNN architectures. In addition to using the network to simply obtain a yes-or-no prediction for a given phenotype, we use the probability outputs calculated by the network to quantitatively describe the phenotypes. This study shows that these probability values correlate with chemical treatment concentrations. This finding validates further our approach and enables chemical treatment potency estimation via CNNs. The network specifications and solver definitions are provided in Supplementary Software 1. william_jose.godinez_navarro@novartis.com or xian-1.zhang@novartis.com. Supplementary data are available at Bioinformatics online. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

a Comparison Study of Different Kernel Functions for Svm-Based Classification of Multi-Temporal Polarimetry SAR Data

NASA Astrophysics Data System (ADS)

Yekkehkhany, B.; Safari, A.; Homayouni, S.; Hasanlou, M.

2014-10-01

In this paper, a framework is developed based on Support Vector Machines (SVM) for crop classification using polarimetric features extracted from multi-temporal Synthetic Aperture Radar (SAR) imageries. The multi-temporal integration of data not only improves the overall retrieval accuracy but also provides more reliable estimates with respect to single-date data. Several kernel functions are employed and compared in this study for mapping the input space to higher Hilbert dimension space. These kernel functions include linear, polynomials and Radial Based Function (RBF). The method is applied to several UAVSAR L-band SAR images acquired over an agricultural area near Winnipeg, Manitoba, Canada. In this research, the temporal alpha features of H/A/α decomposition method are used in classification. The experimental tests show an SVM classifier with RBF kernel for three dates of data increases the Overall Accuracy (OA) to up to 3% in comparison to using linear kernel function, and up to 1% in comparison to a 3rd degree polynomial kernel function.

Supervised Semantic Classification for Nuclear Proliferation Monitoring

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vatsavai, Raju; Cheriyadat, Anil M; Gleason, Shaun Scott

2010-01-01

Existing feature extraction and classification approaches are not suitable for monitoring proliferation activity using high-resolution multi-temporal remote sensing imagery. In this paper we present a supervised semantic labeling framework based on the Latent Dirichlet Allocation method. This framework is used to analyze over 120 images collected under different spatial and temporal settings over the globe representing three major semantic categories: airports, nuclear, and coal power plants. Initial experimental results show a reasonable discrimination of these three categories even though coal and nuclear images share highly common and overlapping objects. This research also identified several research challenges associated with nuclear proliferationmore » monitoring using high resolution remote sensing images.« less

An effective image classification method with the fusion of invariant feature and a new color descriptor

NASA Astrophysics Data System (ADS)

Mansourian, Leila; Taufik Abdullah, Muhamad; Nurliyana Abdullah, Lili; Azman, Azreen; Mustaffa, Mas Rina

2017-02-01

Pyramid Histogram of Words (PHOW), combined Bag of Visual Words (BoVW) with the spatial pyramid matching (SPM) in order to add location information to extracted features. However, different PHOW extracted from various color spaces, and they did not extract color information individually, that means they discard color information, which is an important characteristic of any image that is motivated by human vision. This article, concatenated PHOW Multi-Scale Dense Scale Invariant Feature Transform (MSDSIFT) histogram and a proposed Color histogram to improve the performance of existing image classification algorithms. Performance evaluation on several datasets proves that the new approach outperforms other existing, state-of-the-art methods.

Convolutional Neural Network for Multi-Source Deep Learning Crop Classification in Ukraine

NASA Astrophysics Data System (ADS)

Lavreniuk, M. S.

2016-12-01

Land cover and crop type maps are one of the most essential inputs when dealing with environmental and agriculture monitoring tasks [1]. During long time neural network (NN) approach was one of the most efficient and popular approach for most applications, including crop classification using remote sensing data, with high an overall accuracy (OA) [2]. In the last years the most popular and efficient method for multi-sensor and multi-temporal land cover classification is convolution neural networks (CNNs). Taking into account presence clouds in optical data, self-organizing Kohonen maps (SOMs) are used to restore missing pixel values in a time series of optical imagery from Landsat-8 satellite. After missing data restoration, optical data from Landsat-8 was merged with Sentinel-1A radar data for better crop types discrimination [3]. An ensemble of CNNs is proposed for multi-temporal satellite images supervised classification. Each CNN in the corresponding ensemble is a 1-d CNN with 4 layers implemented using the Google's library TensorFlow. The efficiency of the proposed approach was tested on a time-series of Landsat-8 and Sentinel-1A images over the JECAM test site (Kyiv region) in Ukraine in 2015. Overall classification accuracy for ensemble of CNNs was 93.5% that outperformed an ensemble of multi-layer perceptrons (MLPs) by +0.8% and allowed us to better discriminate summer crops, in particular maize and soybeans. For 2016 we would like to validate this method using Sentinel-1 and Sentinel-2 data for Ukraine territory within ESA project on country level demonstration Sen2Agri. 1. A. Kolotii et al., "Comparison of biophysical and satellite predictors for wheat yield forecasting in Ukraine," The Int. Arch. of Photogram., Rem. Sens. and Spatial Inform. Scie., vol. 40, no. 7, pp. 39-44, 2015. 2. F. Waldner et al., "Towards a set of agrosystem-specific cropland mapping methods to address the global cropland diversity," Int. Journal of Rem. Sens. vol. 37, no. 14, pp 3196-3231, 2016. 3. S. Skakun et al., "Efficiency assessment of multitemporal C-band Radarsat-2 intensity and Landsat-8 surface reflectance satellite imagery for crop classification in Ukraine," IEEE Journal of Selected Topics in Applied Earth Observ. and Rem. Sens., 2015, DOI: 10.1109/JSTARS.2015.2454297.

Multi-classification of cell deformation based on object alignment and run length statistic.

PubMed

Li, Heng; Liu, Zhiwen; An, Xing; Shi, Yonggang

2014-01-01

Cellular morphology is widely applied in digital pathology and is essential for improving our understanding of the basic physiological processes of organisms. One of the main issues of application is to develop efficient methods for cell deformation measurement. We propose an innovative indirect approach to analyze dynamic cell morphology in image sequences. The proposed approach considers both the cellular shape change and cytoplasm variation, and takes each frame in the image sequence into account. The cell deformation is measured by the minimum energy function of object alignment, which is invariant to object pose. Then an indirect analysis strategy is employed to overcome the limitation of gradual deformation by run length statistic. We demonstrate the power of the proposed approach with one application: multi-classification of cell deformation. Experimental results show that the proposed method is sensitive to the morphology variation and performs better than standard shape representation methods.

Extraction of urban vegetation with Pleiades multiangular images

NASA Astrophysics Data System (ADS)

Lefebvre, Antoine; Nabucet, Jean; Corpetti, Thomas; Courty, Nicolas; Hubert-Moy, Laurence

2016-10-01

Vegetation is essential in urban environments since it provides significant services in terms of health, heat, property value, ecology ... As part of the European Union Biodiversity Strategy Plan for 2020, the protection and development of green-infrastructures is strengthened in urban areas. In order to evaluate and monitor the quality of the green infra-structures, this article investigates contributions of Pléiades multi-angular images to extract and characterize low and high urban vegetation. From such images one can extract both spectral and elevation information from optical images. Our method is composed of 3 main steps : (1) the computation of a normalized Digital Surface Model from the multi-angular images ; (2) Extraction of spectral and contextual features ; (3) a classification of vegetation classes (tree and grass) performed with a random forest classifier. Results performed in the city of Rennes in France show the ability of multi-angular images to extract DEM in urban area despite building height. It also highlights its importance and its complementarity with contextual information to extract urban vegetation.

Mapping Winter Wheat with Multi-Temporal SAR and Optical Images in an Urban Agricultural Region

PubMed Central

Zhou, Tao; Pan, Jianjun; Zhang, Peiyu; Wei, Shanbao; Han, Tao

2017-01-01

Winter wheat is the second largest food crop in China. It is important to obtain reliable winter wheat acreage to guarantee the food security for the most populous country in the world. This paper focuses on assessing the feasibility of in-season winter wheat mapping and investigating potential classification improvement by using SAR (Synthetic Aperture Radar) images, optical images, and the integration of both types of data in urban agricultural regions with complex planting structures in Southern China. Both SAR (Sentinel-1A) and optical (Landsat-8) data were acquired, and classification using different combinations of Sentinel-1A-derived information and optical images was performed using a support vector machine (SVM) and a random forest (RF) method. The interference coherence and texture images were obtained and used to assess the effect of adding them to the backscatter intensity images on the classification accuracy. The results showed that the use of four Sentinel-1A images acquired before the jointing period of winter wheat can provide satisfactory winter wheat classification accuracy, with an F1 measure of 87.89%. The combination of SAR and optical images for winter wheat mapping achieved the best F1 measure–up to 98.06%. The SVM was superior to RF in terms of the overall accuracy and the kappa coefficient, and was faster than RF, while the RF classifier was slightly better than SVM in terms of the F1 measure. In addition, the classification accuracy can be effectively improved by adding the texture and coherence images to the backscatter intensity data. PMID:28587066

Development and application of a new comprehensive image-based classification scheme for coastal and benthic environments along the southeast Florida continental shelf

NASA Astrophysics Data System (ADS)

Makowski, Christopher

The coastal (terrestrial) and benthic environments along the southeast Florida continental shelf show a unique biophysical succession of marine features from a highly urbanized, developed coastal region in the north (i.e. northern Miami-Dade County) to a protective marine sanctuary in the southeast (i.e. Florida Keys National Marine Sanctuary). However, the establishment of a standard bio-geomorphological classification scheme for this area of coastal and benthic environments is lacking. The purpose of this study was to test the hypothesis and answer the research question of whether new parameters of integrating geomorphological components with dominant biological covers could be developed and applied across multiple remote sensing platforms for an innovative way to identify, interpret, and classify diverse coastal and benthic environments along the southeast Florida continental shelf. An ordered manageable hierarchical classification scheme was developed to incorporate the categories of Physiographic Realm, Morphodynamic Zone, Geoform, Landform, Dominant Surface Sediment, and Dominant Biological Cover. Six different remote sensing platforms (i.e. five multi-spectral satellite image sensors and one high-resolution aerial orthoimagery) were acquired, delineated according to the new classification scheme, and compared to determine optimal formats for classifying the study area. Cognitive digital classification at a nominal scale of 1:6000 proved to be more accurate than autoclassification programs and therefore used to differentiate coastal marine environments based on spectral reflectance characteristics, such as color, tone, saturation, pattern, and texture of the seafloor topology. In addition, attribute tables were created in conjugation with interpretations to quantify and compare the spatial relationships between classificatory units. IKONOS-2 satellite imagery was determined to be the optimal platform for applying the hierarchical classification scheme. However, each remote sensing platform had beneficial properties depending on research goals, logistical restrictions, and financial support. This study concluded that a new hierarchical comprehensive classification scheme for identifying coastal marine environments along the southeast Florida continental shelf could be achieved by integrating geomorphological features with biological coverages. This newly developed scheme, which can be applied across multiple remote sensing platforms with GIS software, establishes an innovative classification protocol to be used in future research studies.

Can glenoid wear be accurately assessed using x-ray imaging? Evaluating agreement of x-ray and magnetic resonance imaging (MRI) Walch classification.

PubMed

Kopka, Michaela; Fourman, Mitchell; Soni, Ashish; Cordle, Andrew C; Lin, Albert

2017-09-01

The Walch classification is the most recognized means of assessing glenoid wear in preoperative planning for shoulder arthroplasty. This classification relies on advanced imaging, which is more expensive and less practical than plain radiographs. The purpose of this study was to determine whether the Walch classification could be accurately applied to x-ray images compared with magnetic resonance imaging (MRI) as the gold standard. We hypothesized that x-ray images cannot adequately replace advanced imaging in the evaluation of glenoid wear. Preoperative axillary x-ray images and MRI scans of 50 patients assessed for shoulder arthroplasty were independently reviewed by 5 raters. Glenoid wear was individually classified according to the Walch classification using each imaging modality. The raters then collectively reviewed the MRI scans and assigned a consensus classification to serve as the gold standard. The κ coefficient was used to determine interobserver agreement for x-ray images and independent MRI reads, as well as the agreement between x-ray images and consensus MRI. The inter-rater agreement for x-ray images and MRIs was "moderate" (κ = 0.42 and κ = 0.47, respectively) for the 5-category Walch classification (A1, A2, B1, B2, C) and "moderate" (κ = 0.54 and κ = 0.59, respectively) for the 3-category Walch classification (A, B, C). The agreement between x-ray images and consensus MRI was much lower: "fair-to-moderate" (κ = 0.21-0.51) for the 5-category and "moderate" (κ = 0.36-0.60) for the 3-category Walch classification. The inter-rater agreement between x-ray images and consensus MRI is "fair-to-moderate." This is lower than the previously reported reliability of the Walch classification using computed tomography scans. Accordingly, x-ray images are inferior to advanced imaging when assessing glenoid wear. Copyright © 2017 Journal of Shoulder and Elbow Surgery Board of Trustees. Published by Elsevier Inc. All rights reserved.

Determination of the Impact of Urbanization on Agricultural Lands using Multi-temporal Satellite Sensor Images

NASA Astrophysics Data System (ADS)

Kaya, S.; Alganci, U.; Sertel, E.; Ustundag, B.

2015-12-01

Throughout the history, agricultural activities have been performed close to urban areas. Main reason behind this phenomenon is the need of fast marketing of the agricultural production to urban residents and financial provision. Thus, using the areas nearby cities for agricultural activities brings out advantage of easy transportation of productions and fast marketing. For decades, heavy migration to cities has directly and negatively affected natural grasslands, forests and agricultural lands. This pressure has caused agricultural lands to be changed into urban areas. Dense urbanization causes increase in impervious surfaces, heat islands and many other problems in addition to destruction of agricultural lands. Considering the negative impacts of urbanization on agricultural lands and natural resources, a periodic monitoring of these changes becomes indisputably important. At this point, satellite images are known to be good data sources for land cover / use change monitoring with their fast data acquisition, large area coverages and temporal resolution properties. Classification of the satellite images provides thematic the land cover / use maps of the earth surface and changes can be determined with GIS based analysis multi-temporal maps. In this study, effects of heavy urbanization over agricultural lands in Istanbul, metropolitan city of Turkey, were investigated with use of multi-temporal Landsat TM satellite images acquired between 1984 and 2011. Images were geometrically registered to each other and classified using supervised maximum likelihood classification algorithm. Resulting thematic maps were exported to GIS environment and destructed agricultural lands by urbanization were determined using spatial analysis.

Track Everything: Limiting Prior Knowledge in Online Multi-Object Recognition.

PubMed

Wong, Sebastien C; Stamatescu, Victor; Gatt, Adam; Kearney, David; Lee, Ivan; McDonnell, Mark D

2017-10-01

This paper addresses the problem of online tracking and classification of multiple objects in an image sequence. Our proposed solution is to first track all objects in the scene without relying on object-specific prior knowledge, which in other systems can take the form of hand-crafted features or user-based track initialization. We then classify the tracked objects with a fast-learning image classifier, that is based on a shallow convolutional neural network architecture and demonstrate that object recognition improves when this is combined with object state information from the tracking algorithm. We argue that by transferring the use of prior knowledge from the detection and tracking stages to the classification stage, we can design a robust, general purpose object recognition system with the ability to detect and track a variety of object types. We describe our biologically inspired implementation, which adaptively learns the shape and motion of tracked objects, and apply it to the Neovision2 Tower benchmark data set, which contains multiple object types. An experimental evaluation demonstrates that our approach is competitive with the state-of-the-art video object recognition systems that do make use of object-specific prior knowledge in detection and tracking, while providing additional practical advantages by virtue of its generality.

Learning discriminative features from RGB-D images for gender and ethnicity identification

NASA Astrophysics Data System (ADS)

Azzakhnini, Safaa; Ballihi, Lahoucine; Aboutajdine, Driss

2016-11-01

The development of sophisticated sensor technologies gave rise to an interesting variety of data. With the appearance of affordable devices, such as the Microsoft Kinect, depth-maps and three-dimensional data became easily accessible. This attracted many computer vision researchers seeking to exploit this information in classification and recognition tasks. In this work, the problem of face classification in the context of RGB images and depth information (RGB-D images) is addressed. The purpose of this paper is to study and compare some popular techniques for gender recognition and ethnicity classification to understand how much depth data can improve the quality of recognition. Furthermore, we investigate which combination of face descriptors, feature selection methods, and learning techniques is best suited to better exploit RGB-D images. The experimental results show that depth data improve the recognition accuracy for gender and ethnicity classification applications in many use cases.

Learned filters for object detection in multi-object visual tracking

NASA Astrophysics Data System (ADS)

Stamatescu, Victor; Wong, Sebastien; McDonnell, Mark D.; Kearney, David

2016-05-01

We investigate the application of learned convolutional filters in multi-object visual tracking. The filters were learned in both a supervised and unsupervised manner from image data using artificial neural networks. This work follows recent results in the field of machine learning that demonstrate the use learned filters for enhanced object detection and classification. Here we employ a track-before-detect approach to multi-object tracking, where tracking guides the detection process. The object detection provides a probabilistic input image calculated by selecting from features obtained using banks of generative or discriminative learned filters. We present a systematic evaluation of these convolutional filters using a real-world data set that examines their performance as generic object detectors.

Mapping seabed sediments: Comparison of manual, geostatistical, object-based image analysis and machine learning approaches

NASA Astrophysics Data System (ADS)

Diesing, Markus; Green, Sophie L.; Stephens, David; Lark, R. Murray; Stewart, Heather A.; Dove, Dayton

2014-08-01

Marine spatial planning and conservation need underpinning with sufficiently detailed and accurate seabed substrate and habitat maps. Although multibeam echosounders enable us to map the seabed with high resolution and spatial accuracy, there is still a lack of fit-for-purpose seabed maps. This is due to the high costs involved in carrying out systematic seabed mapping programmes and the fact that the development of validated, repeatable, quantitative and objective methods of swath acoustic data interpretation is still in its infancy. We compared a wide spectrum of approaches including manual interpretation, geostatistics, object-based image analysis and machine-learning to gain further insights into the accuracy and comparability of acoustic data interpretation approaches based on multibeam echosounder data (bathymetry, backscatter and derivatives) and seabed samples with the aim to derive seabed substrate maps. Sample data were split into a training and validation data set to allow us to carry out an accuracy assessment. Overall thematic classification accuracy ranged from 67% to 76% and Cohen's kappa varied between 0.34 and 0.52. However, these differences were not statistically significant at the 5% level. Misclassifications were mainly associated with uncommon classes, which were rarely sampled. Map outputs were between 68% and 87% identical. To improve classification accuracy in seabed mapping, we suggest that more studies on the effects of factors affecting the classification performance as well as comparative studies testing the performance of different approaches need to be carried out with a view to developing guidelines for selecting an appropriate method for a given dataset. In the meantime, classification accuracy might be improved by combining different techniques to hybrid approaches and multi-method ensembles.

Multi-scale Gaussian representation and outline-learning based cell image segmentation.

PubMed

Farhan, Muhammad; Ruusuvuori, Pekka; Emmenlauer, Mario; Rämö, Pauli; Dehio, Christoph; Yli-Harja, Olli

2013-01-01

High-throughput genome-wide screening to study gene-specific functions, e.g. for drug discovery, demands fast automated image analysis methods to assist in unraveling the full potential of such studies. Image segmentation is typically at the forefront of such analysis as the performance of the subsequent steps, for example, cell classification, cell tracking etc., often relies on the results of segmentation. We present a cell cytoplasm segmentation framework which first separates cell cytoplasm from image background using novel approach of image enhancement and coefficient of variation of multi-scale Gaussian scale-space representation. A novel outline-learning based classification method is developed using regularized logistic regression with embedded feature selection which classifies image pixels as outline/non-outline to give cytoplasm outlines. Refinement of the detected outlines to separate cells from each other is performed in a post-processing step where the nuclei segmentation is used as contextual information. We evaluate the proposed segmentation methodology using two challenging test cases, presenting images with completely different characteristics, with cells of varying size, shape, texture and degrees of overlap. The feature selection and classification framework for outline detection produces very simple sparse models which use only a small subset of the large, generic feature set, that is, only 7 and 5 features for the two cases. Quantitative comparison of the results for the two test cases against state-of-the-art methods show that our methodology outperforms them with an increase of 4-9% in segmentation accuracy with maximum accuracy of 93%. Finally, the results obtained for diverse datasets demonstrate that our framework not only produces accurate segmentation but also generalizes well to different segmentation tasks.

Multi-scale Gaussian representation and outline-learning based cell image segmentation

PubMed Central

2013-01-01

Background High-throughput genome-wide screening to study gene-specific functions, e.g. for drug discovery, demands fast automated image analysis methods to assist in unraveling the full potential of such studies. Image segmentation is typically at the forefront of such analysis as the performance of the subsequent steps, for example, cell classification, cell tracking etc., often relies on the results of segmentation. Methods We present a cell cytoplasm segmentation framework which first separates cell cytoplasm from image background using novel approach of image enhancement and coefficient of variation of multi-scale Gaussian scale-space representation. A novel outline-learning based classification method is developed using regularized logistic regression with embedded feature selection which classifies image pixels as outline/non-outline to give cytoplasm outlines. Refinement of the detected outlines to separate cells from each other is performed in a post-processing step where the nuclei segmentation is used as contextual information. Results and conclusions We evaluate the proposed segmentation methodology using two challenging test cases, presenting images with completely different characteristics, with cells of varying size, shape, texture and degrees of overlap. The feature selection and classification framework for outline detection produces very simple sparse models which use only a small subset of the large, generic feature set, that is, only 7 and 5 features for the two cases. Quantitative comparison of the results for the two test cases against state-of-the-art methods show that our methodology outperforms them with an increase of 4-9% in segmentation accuracy with maximum accuracy of 93%. Finally, the results obtained for diverse datasets demonstrate that our framework not only produces accurate segmentation but also generalizes well to different segmentation tasks. PMID:24267488

Landsat sattelite multi-spectral image classification of land cover and land use changes for GIS-based urbanization analysis in irrigation districts of lower Rio Grande Valley of Texas

USDA-ARS?s Scientific Manuscript database

The Lower Rio Grande Valley in the south of Texas is experiencing rapid increase of population to bring up urban growth that continues influencing on the irrigation districts in the region. This study evaluated the Landsat satellite multi-spectral imagery to provide information for GIS-based urbaniz...

Assessment of Classification Accuracies of SENTINEL-2 and LANDSAT-8 Data for Land Cover / Use Mapping

NASA Astrophysics Data System (ADS)

Hale Topaloğlu, Raziye; Sertel, Elif; Musaoğlu, Nebiye

2016-06-01

This study aims to compare classification accuracies of land cover/use maps created from Sentinel-2 and Landsat-8 data. Istanbul metropolitan city of Turkey, with a population of around 14 million, having different landscape characteristics was selected as study area. Water, forest, agricultural areas, grasslands, transport network, urban, airport- industrial units and barren land- mine land cover/use classes adapted from CORINE nomenclature were used as main land cover/use classes to identify. To fulfil the aims of this research, recently acquired dated 08/02/2016 Sentinel-2 and dated 22/02/2016 Landsat-8 images of Istanbul were obtained and image pre-processing steps like atmospheric and geometric correction were employed. Both Sentinel-2 and Landsat-8 images were resampled to 30m pixel size after geometric correction and similar spectral bands for both satellites were selected to create a similar base for these multi-sensor data. Maximum Likelihood (MLC) and Support Vector Machine (SVM) supervised classification methods were applied to both data sets to accurately identify eight different land cover/ use classes. Error matrix was created using same reference points for Sentinel-2 and Landsat-8 classifications. After the classification accuracy, results were compared to find out the best approach to create current land cover/use map of the region. The results of MLC and SVM classification methods were compared for both images.

Classification Comparisons Between Compact Polarimetric and Quad-Pol SAR Imagery

NASA Astrophysics Data System (ADS)

Souissi, Boularbah; Doulgeris, Anthony P.; Eltoft, Torbjørn

2015-04-01

Recent interest in dual-pol SAR systems has lead to a novel approach, the so-called compact polarimetric imaging mode (CP) which attempts to reconstruct fully polarimetric information based on a few simple assumptions. In this work, the CP image is simulated from the full quad-pol (QP) image. We present here the initial comparison of polarimetric information content between QP and CP imaging modes. The analysis of multi-look polarimetric covariance matrix data uses an automated statistical clustering method based upon the expectation maximization (EM) algorithm for finite mixture modeling, using the complex Wishart probability density function. Our results showed that there are some different characteristics between the QP and CP modes. The classification is demonstrated using a E-SAR and Radarsat2 polarimetric SAR images acquired over DLR Oberpfaffenhofen in Germany and Algiers in Algeria respectively.

An efficient abnormal cervical cell detection system based on multi-instance extreme learning machine

NASA Astrophysics Data System (ADS)

Zhao, Lili; Yin, Jianping; Yuan, Lihuan; Liu, Qiang; Li, Kuan; Qiu, Minghui

2017-07-01

Automatic detection of abnormal cells from cervical smear images is extremely demanded in annual diagnosis of women's cervical cancer. For this medical cell recognition problem, there are three different feature sections, namely cytology morphology, nuclear chromatin pathology and region intensity. The challenges of this problem come from feature combination s and classification accurately and efficiently. Thus, we propose an efficient abnormal cervical cell detection system based on multi-instance extreme learning machine (MI-ELM) to deal with above two questions in one unified framework. MI-ELM is one of the most promising supervised learning classifiers which can deal with several feature sections and realistic classification problems analytically. Experiment results over Herlev dataset demonstrate that the proposed method outperforms three traditional methods for two-class classification in terms of well accuracy and less time.

Determining the saliency of feature measurements obtained from images of sedimentary organic matter for use in its classification

NASA Astrophysics Data System (ADS)

Weller, Andrew F.; Harris, Anthony J.; Ware, J. Andrew; Jarvis, Paul S.

2006-11-01

The classification of sedimentary organic matter (OM) images can be improved by determining the saliency of image analysis (IA) features measured from them. Knowing the saliency of IA feature measurements means that only the most significant discriminating features need be used in the classification process. This is an important consideration for classification techniques such as artificial neural networks (ANNs), where too many features can lead to the 'curse of dimensionality'. The classification scheme adopted in this work is a hybrid of morphologically and texturally descriptive features from previous manual classification schemes. Some of these descriptive features are assigned to IA features, along with several others built into the IA software (Halcon) to ensure that a valid cross-section is available. After an image is captured and segmented, a total of 194 features are measured for each particle. To reduce this number to a more manageable magnitude, the SPSS AnswerTree Exhaustive CHAID (χ 2 automatic interaction detector) classification tree algorithm is used to establish each measurement's saliency as a classification discriminator. In the case of continuous data as used here, the F-test is used as opposed to the published algorithm. The F-test checks various statistical hypotheses about the variance of groups of IA feature measurements obtained from the particles to be classified. The aim is to reduce the number of features required to perform the classification without reducing its accuracy. In the best-case scenario, 194 inputs are reduced to 8, with a subsequent multi-layer back-propagation ANN recognition rate of 98.65%. This paper demonstrates the ability of the algorithm to reduce noise, help overcome the curse of dimensionality, and facilitate an understanding of the saliency of IA features as discriminators for sedimentary OM classification.

Texture classification of lung computed tomography images

NASA Astrophysics Data System (ADS)

Pheng, Hang See; Shamsuddin, Siti M.

2013-03-01

Current development of algorithms in computer-aided diagnosis (CAD) scheme is growing rapidly to assist the radiologist in medical image interpretation. Texture analysis of computed tomography (CT) scans is one of important preliminary stage in the computerized detection system and classification for lung cancer. Among different types of images features analysis, Haralick texture with variety of statistical measures has been used widely in image texture description. The extraction of texture feature values is essential to be used by a CAD especially in classification of the normal and abnormal tissue on the cross sectional CT images. This paper aims to compare experimental results using texture extraction and different machine leaning methods in the classification normal and abnormal tissues through lung CT images. The machine learning methods involve in this assessment are Artificial Immune Recognition System (AIRS), Naive Bayes, Decision Tree (J48) and Backpropagation Neural Network. AIRS is found to provide high accuracy (99.2%) and sensitivity (98.0%) in the assessment. For experiments and testing purpose, publicly available datasets in the Reference Image Database to Evaluate Therapy Response (RIDER) are used as study cases.

Automated Grading of Gliomas using Deep Learning in Digital Pathology Images: A modular approach with ensemble of convolutional neural networks.

PubMed

Ertosun, Mehmet Günhan; Rubin, Daniel L

2015-01-01

Brain glioma is the most common primary malignant brain tumors in adults with different pathologic subtypes: Lower Grade Glioma (LGG) Grade II, Lower Grade Glioma (LGG) Grade III, and Glioblastoma Multiforme (GBM) Grade IV. The survival and treatment options are highly dependent of this glioma grade. We propose a deep learning-based, modular classification pipeline for automated grading of gliomas using digital pathology images. Whole tissue digitized images of pathology slides obtained from The Cancer Genome Atlas (TCGA) were used to train our deep learning modules. Our modular pipeline provides diagnostic quality statistics, such as precision, sensitivity and specificity, of the individual deep learning modules, and (1) facilitates training given the limited data in this domain, (2) enables exploration of different deep learning structures for each module, (3) leads to developing less complex modules that are simpler to analyze, and (4) provides flexibility, permitting use of single modules within the framework or use of other modeling or machine learning applications, such as probabilistic graphical models or support vector machines. Our modular approach helps us meet the requirements of minimum accuracy levels that are demanded by the context of different decision points within a multi-class classification scheme. Convolutional Neural Networks are trained for each module for each sub-task with more than 90% classification accuracies on validation data set, and achieved classification accuracy of 96% for the task of GBM vs LGG classification, 71% for further identifying the grade of LGG into Grade II or Grade III on independent data set coming from new patients from the multi-institutional repository.

Automated Grading of Gliomas using Deep Learning in Digital Pathology Images: A modular approach with ensemble of convolutional neural networks

PubMed Central

Ertosun, Mehmet Günhan; Rubin, Daniel L.

2015-01-01

Brain glioma is the most common primary malignant brain tumors in adults with different pathologic subtypes: Lower Grade Glioma (LGG) Grade II, Lower Grade Glioma (LGG) Grade III, and Glioblastoma Multiforme (GBM) Grade IV. The survival and treatment options are highly dependent of this glioma grade. We propose a deep learning-based, modular classification pipeline for automated grading of gliomas using digital pathology images. Whole tissue digitized images of pathology slides obtained from The Cancer Genome Atlas (TCGA) were used to train our deep learning modules. Our modular pipeline provides diagnostic quality statistics, such as precision, sensitivity and specificity, of the individual deep learning modules, and (1) facilitates training given the limited data in this domain, (2) enables exploration of different deep learning structures for each module, (3) leads to developing less complex modules that are simpler to analyze, and (4) provides flexibility, permitting use of single modules within the framework or use of other modeling or machine learning applications, such as probabilistic graphical models or support vector machines. Our modular approach helps us meet the requirements of minimum accuracy levels that are demanded by the context of different decision points within a multi-class classification scheme. Convolutional Neural Networks are trained for each module for each sub-task with more than 90% classification accuracies on validation data set, and achieved classification accuracy of 96% for the task of GBM vs LGG classification, 71% for further identifying the grade of LGG into Grade II or Grade III on independent data set coming from new patients from the multi-institutional repository. PMID:26958289

Testing Multivariate Adaptive Regression Splines (MARS) as a Method of Land Cover Classification of TERRA-ASTER Satellite Images.

PubMed

Quirós, Elia; Felicísimo, Angel M; Cuartero, Aurora

2009-01-01

This work proposes a new method to classify multi-spectral satellite images based on multivariate adaptive regression splines (MARS) and compares this classification system with the more common parallelepiped and maximum likelihood (ML) methods. We apply the classification methods to the land cover classification of a test zone located in southwestern Spain. The basis of the MARS method and its associated procedures are explained in detail, and the area under the ROC curve (AUC) is compared for the three methods. The results show that the MARS method provides better results than the parallelepiped method in all cases, and it provides better results than the maximum likelihood method in 13 cases out of 17. These results demonstrate that the MARS method can be used in isolation or in combination with other methods to improve the accuracy of soil cover classification. The improvement is statistically significant according to the Wilcoxon signed rank test.

Automated Processing of Imaging Data through Multi-tiered Classification of Biological Structures Illustrated Using Caenorhabditis elegans.

PubMed

Zhan, Mei; Crane, Matthew M; Entchev, Eugeni V; Caballero, Antonio; Fernandes de Abreu, Diana Andrea; Ch'ng, QueeLim; Lu, Hang

2015-04-01

Quantitative imaging has become a vital technique in biological discovery and clinical diagnostics; a plethora of tools have recently been developed to enable new and accelerated forms of biological investigation. Increasingly, the capacity for high-throughput experimentation provided by new imaging modalities, contrast techniques, microscopy tools, microfluidics and computer controlled systems shifts the experimental bottleneck from the level of physical manipulation and raw data collection to automated recognition and data processing. Yet, despite their broad importance, image analysis solutions to address these needs have been narrowly tailored. Here, we present a generalizable formulation for autonomous identification of specific biological structures that is applicable for many problems. The process flow architecture we present here utilizes standard image processing techniques and the multi-tiered application of classification models such as support vector machines (SVM). These low-level functions are readily available in a large array of image processing software packages and programming languages. Our framework is thus both easy to implement at the modular level and provides specific high-level architecture to guide the solution of more complicated image-processing problems. We demonstrate the utility of the classification routine by developing two specific classifiers as a toolset for automation and cell identification in the model organism Caenorhabditis elegans. To serve a common need for automated high-resolution imaging and behavior applications in the C. elegans research community, we contribute a ready-to-use classifier for the identification of the head of the animal under bright field imaging. Furthermore, we extend our framework to address the pervasive problem of cell-specific identification under fluorescent imaging, which is critical for biological investigation in multicellular organisms or tissues. Using these examples as a guide, we envision the broad utility of the framework for diverse problems across different length scales and imaging methods.

Multi-threshold white matter structural networks fusion for accurate diagnosis of Tourette syndrome children

NASA Astrophysics Data System (ADS)

Wen, Hongwei; Liu, Yue; Wang, Shengpei; Li, Zuoyong; Zhang, Jishui; Peng, Yun; He, Huiguang

2017-03-01

Tourette syndrome (TS) is a childhood-onset neurobehavioral disorder. To date, TS is still misdiagnosed due to its varied presentation and lacking of obvious clinical symptoms. Therefore, studies of objective imaging biomarkers are of great importance for early TS diagnosis. As tic generation has been linked to disturbed structural networks, and many efforts have been made recently to investigate brain functional or structural networks using machine learning methods, for the purpose of disease diagnosis. However, few studies were related to TS and some drawbacks still existed in them. Therefore, we propose a novel classification framework integrating a multi-threshold strategy and a network fusion scheme to address the preexisting drawbacks. Here we used diffusion MRI probabilistic tractography to construct the structural networks of 44 TS children and 48 healthy children. We ameliorated the similarity network fusion algorithm specially to fuse the multi-threshold structural networks. Graph theoretical analysis was then implemented, and nodal degree, nodal efficiency and nodal betweenness centrality were selected as features. Finally, support vector machine recursive feature extraction (SVM-RFE) algorithm was used for feature selection, and then optimal features are fed into SVM to automatically discriminate TS children from controls. We achieved a high accuracy of 89.13% evaluated by a nested cross validation, demonstrated the superior performance of our framework over other comparison methods. The involved discriminative regions for classification primarily located in the basal ganglia and frontal cortico-cortical networks, all highly related to the pathology of TS. Together, our study may provide potential neuroimaging biomarkers for early-stage TS diagnosis.

Transfer learning improves supervised image segmentation across imaging protocols.

PubMed

van Opbroek, Annegreet; Ikram, M Arfan; Vernooij, Meike W; de Bruijne, Marleen

2015-05-01

The variation between images obtained with different scanners or different imaging protocols presents a major challenge in automatic segmentation of biomedical images. This variation especially hampers the application of otherwise successful supervised-learning techniques which, in order to perform well, often require a large amount of labeled training data that is exactly representative of the target data. We therefore propose to use transfer learning for image segmentation. Transfer-learning techniques can cope with differences in distributions between training and target data, and therefore may improve performance over supervised learning for segmentation across scanners and scan protocols. We present four transfer classifiers that can train a classification scheme with only a small amount of representative training data, in addition to a larger amount of other training data with slightly different characteristics. The performance of the four transfer classifiers was compared to that of standard supervised classification on two magnetic resonance imaging brain-segmentation tasks with multi-site data: white matter, gray matter, and cerebrospinal fluid segmentation; and white-matter-/MS-lesion segmentation. The experiments showed that when there is only a small amount of representative training data available, transfer learning can greatly outperform common supervised-learning approaches, minimizing classification errors by up to 60%.

The Effect of Sub-Aperture in DRIA Framework Applied on Multi-Aspect PolSAR Data

NASA Astrophysics Data System (ADS)

Xue, Feiteng; Yin, Qiang; Lin, Yun; Hong, Wen

2016-08-01

Multi-aspect SAR is a new remote sensing technology, achieves consecutive data in large look angle as platform moves. Multi- aspect observation brings higher resolution and SNR to SAR picture. Multi-aspect PolSAR data can increase the accuracy of target identify and classification because it contains the 3-D polarimetric scattering properties.DRIA(detecting-removing-incoherent-adding)framework is a multi-aspect PolSAR data processing method. In this method, the anisotropic and isotropic scattering is separated by maximum- likelihood ratio test. The anisotropic scattering is removed to gain a removal series. The isotropic scattering is incoherent added to gain a high resolution picture. The removal series describes the anisotropic scattering property and is used in features extraction and classification.This article focuses on the effect brought by difference of sub-aperture numbers in anisotropic scattering detection and removal. The more sub-apertures are, the less look angle is. Artificial target has anisotropic scattering because of Bragg resonances. The increase of sub-aperture number brings more accurate observation in azimuth though the quality of each single image may loss. The accuracy of classification in agricultural fields is affected by the anisotropic scattering brought by Bragg resonances. The size of the sub-aperture has a significant effect in the removal result of Bragg resonances.

Recognition of rotated images using the multi-valued neuron and rotation-invariant 2D Fourier descriptors

NASA Astrophysics Data System (ADS)

Aizenberg, Evgeni; Bigio, Irving J.; Rodriguez-Diaz, Eladio

2012-03-01

The Fourier descriptors paradigm is a well-established approach for affine-invariant characterization of shape contours. In the work presented here, we extend this method to images, and obtain a 2D Fourier representation that is invariant to image rotation. The proposed technique retains phase uniqueness, and therefore structural image information is not lost. Rotation-invariant phase coefficients were used to train a single multi-valued neuron (MVN) to recognize satellite and human face images rotated by a wide range of angles. Experiments yielded 100% and 96.43% classification rate for each data set, respectively. Recognition performance was additionally evaluated under effects of lossy JPEG compression and additive Gaussian noise. Preliminary results show that the derived rotation-invariant features combined with the MVN provide a promising scheme for efficient recognition of rotated images.

Comparison of unsupervised classification methods for brain tumor segmentation using multi-parametric MRI.

PubMed

Sauwen, N; Acou, M; Van Cauter, S; Sima, D M; Veraart, J; Maes, F; Himmelreich, U; Achten, E; Van Huffel, S

2016-01-01

Tumor segmentation is a particularly challenging task in high-grade gliomas (HGGs), as they are among the most heterogeneous tumors in oncology. An accurate delineation of the lesion and its main subcomponents contributes to optimal treatment planning, prognosis and follow-up. Conventional MRI (cMRI) is the imaging modality of choice for manual segmentation, and is also considered in the vast majority of automated segmentation studies. Advanced MRI modalities such as perfusion-weighted imaging (PWI), diffusion-weighted imaging (DWI) and magnetic resonance spectroscopic imaging (MRSI) have already shown their added value in tumor tissue characterization, hence there have been recent suggestions of combining different MRI modalities into a multi-parametric MRI (MP-MRI) approach for brain tumor segmentation. In this paper, we compare the performance of several unsupervised classification methods for HGG segmentation based on MP-MRI data including cMRI, DWI, MRSI and PWI. Two independent MP-MRI datasets with a different acquisition protocol were available from different hospitals. We demonstrate that a hierarchical non-negative matrix factorization variant which was previously introduced for MP-MRI tumor segmentation gives the best performance in terms of mean Dice-scores for the pathologic tissue classes on both datasets.

Multi-class texture analysis in colorectal cancer histology

NASA Astrophysics Data System (ADS)

Kather, Jakob Nikolas; Weis, Cleo-Aron; Bianconi, Francesco; Melchers, Susanne M.; Schad, Lothar R.; Gaiser, Timo; Marx, Alexander; Zöllner, Frank Gerrit

2016-06-01

Automatic recognition of different tissue types in histological images is an essential part in the digital pathology toolbox. Texture analysis is commonly used to address this problem; mainly in the context of estimating the tumour/stroma ratio on histological samples. However, although histological images typically contain more than two tissue types, only few studies have addressed the multi-class problem. For colorectal cancer, one of the most prevalent tumour types, there are in fact no published results on multiclass texture separation. In this paper we present a new dataset of 5,000 histological images of human colorectal cancer including eight different types of tissue. We used this set to assess the classification performance of a wide range of texture descriptors and classifiers. As a result, we found an optimal classification strategy that markedly outperformed traditional methods, improving the state of the art for tumour-stroma separation from 96.9% to 98.6% accuracy and setting a new standard for multiclass tissue separation (87.4% accuracy for eight classes). We make our dataset of histological images publicly available under a Creative Commons license and encourage other researchers to use it as a benchmark for their studies.

Evaluation of Multiple Kernel Learning Algorithms for Crop Mapping Using Satellite Image Time-Series Data

NASA Astrophysics Data System (ADS)

Niazmardi, S.; Safari, A.; Homayouni, S.

2017-09-01

Crop mapping through classification of Satellite Image Time-Series (SITS) data can provide very valuable information for several agricultural applications, such as crop monitoring, yield estimation, and crop inventory. However, the SITS data classification is not straightforward. Because different images of a SITS data have different levels of information regarding the classification problems. Moreover, the SITS data is a four-dimensional data that cannot be classified using the conventional classification algorithms. To address these issues in this paper, we presented a classification strategy based on Multiple Kernel Learning (MKL) algorithms for SITS data classification. In this strategy, initially different kernels are constructed from different images of the SITS data and then they are combined into a composite kernel using the MKL algorithms. The composite kernel, once constructed, can be used for the classification of the data using the kernel-based classification algorithms. We compared the computational time and the classification performances of the proposed classification strategy using different MKL algorithms for the purpose of crop mapping. The considered MKL algorithms are: MKL-Sum, SimpleMKL, LPMKL and Group-Lasso MKL algorithms. The experimental tests of the proposed strategy on two SITS data sets, acquired by SPOT satellite sensors, showed that this strategy was able to provide better performances when compared to the standard classification algorithm. The results also showed that the optimization method of the used MKL algorithms affects both the computational time and classification accuracy of this strategy.

A new tool for supervised classification of satellite images available on web servers: Google Maps as a case study

NASA Astrophysics Data System (ADS)

García-Flores, Agustín.; Paz-Gallardo, Abel; Plaza, Antonio; Li, Jun

2016-10-01

This paper describes a new web platform dedicated to the classification of satellite images called Hypergim. The current implementation of this platform enables users to perform classification of satellite images from any part of the world thanks to the worldwide maps provided by Google Maps. To perform this classification, Hypergim uses unsupervised algorithms like Isodata and K-means. Here, we present an extension of the original platform in which we adapt Hypergim in order to use supervised algorithms to improve the classification results. This involves a significant modification of the user interface, providing the user with a way to obtain samples of classes present in the images to use in the training phase of the classification process. Another main goal of this development is to improve the runtime of the image classification process. To achieve this goal, we use a parallel implementation of the Random Forest classification algorithm. This implementation is a modification of the well-known CURFIL software package. The use of this type of algorithms to perform image classification is widespread today thanks to its precision and ease of training. The actual implementation of Random Forest was developed using CUDA platform, which enables us to exploit the potential of several models of NVIDIA graphics processing units using them to execute general purpose computing tasks as image classification algorithms. As well as CUDA, we use other parallel libraries as Intel Boost, taking advantage of the multithreading capabilities of modern CPUs. To ensure the best possible results, the platform is deployed in a cluster of commodity graphics processing units (GPUs), so that multiple users can use the tool in a concurrent way. The experimental results indicate that this new algorithm widely outperform the previous unsupervised algorithms implemented in Hypergim, both in runtime as well as precision of the actual classification of the images.

Brain tumor classification and segmentation using sparse coding and dictionary learning.

PubMed

Salman Al-Shaikhli, Saif Dawood; Yang, Michael Ying; Rosenhahn, Bodo

2016-08-01

This paper presents a novel fully automatic framework for multi-class brain tumor classification and segmentation using a sparse coding and dictionary learning method. The proposed framework consists of two steps: classification and segmentation. The classification of the brain tumors is based on brain topology and texture. The segmentation is based on voxel values of the image data. Using K-SVD, two types of dictionaries are learned from the training data and their associated ground truth segmentation: feature dictionary and voxel-wise coupled dictionaries. The feature dictionary consists of global image features (topological and texture features). The coupled dictionaries consist of coupled information: gray scale voxel values of the training image data and their associated label voxel values of the ground truth segmentation of the training data. For quantitative evaluation, the proposed framework is evaluated using different metrics. The segmentation results of the brain tumor segmentation (MICCAI-BraTS-2013) database are evaluated using five different metric scores, which are computed using the online evaluation tool provided by the BraTS-2013 challenge organizers. Experimental results demonstrate that the proposed approach achieves an accurate brain tumor classification and segmentation and outperforms the state-of-the-art methods.

Object-Part Attention Model for Fine-Grained Image Classification

NASA Astrophysics Data System (ADS)

Peng, Yuxin; He, Xiangteng; Zhao, Junjie

2018-03-01

Fine-grained image classification is to recognize hundreds of subcategories belonging to the same basic-level category, such as 200 subcategories belonging to the bird, which is highly challenging due to large variance in the same subcategory and small variance among different subcategories. Existing methods generally first locate the objects or parts and then discriminate which subcategory the image belongs to. However, they mainly have two limitations: (1) Relying on object or part annotations which are heavily labor consuming. (2) Ignoring the spatial relationships between the object and its parts as well as among these parts, both of which are significantly helpful for finding discriminative parts. Therefore, this paper proposes the object-part attention model (OPAM) for weakly supervised fine-grained image classification, and the main novelties are: (1) Object-part attention model integrates two level attentions: object-level attention localizes objects of images, and part-level attention selects discriminative parts of object. Both are jointly employed to learn multi-view and multi-scale features to enhance their mutual promotions. (2) Object-part spatial constraint model combines two spatial constraints: object spatial constraint ensures selected parts highly representative, and part spatial constraint eliminates redundancy and enhances discrimination of selected parts. Both are jointly employed to exploit the subtle and local differences for distinguishing the subcategories. Importantly, neither object nor part annotations are used in our proposed approach, which avoids the heavy labor consumption of labeling. Comparing with more than 10 state-of-the-art methods on 4 widely-used datasets, our OPAM approach achieves the best performance.

TeraSCREEN: multi-frequency multi-mode Terahertz screening for border checks

NASA Astrophysics Data System (ADS)

Alexander, Naomi E.; Alderman, Byron; Allona, Fernando; Frijlink, Peter; Gonzalo, Ramón; Hägelen, Manfred; Ibáñez, Asier; Krozer, Viktor; Langford, Marian L.; Limiti, Ernesto; Platt, Duncan; Schikora, Marek; Wang, Hui; Weber, Marc Andree

2014-06-01

The challenge for any security screening system is to identify potentially harmful objects such as weapons and explosives concealed under clothing. Classical border and security checkpoints are no longer capable of fulfilling the demands of today's ever growing security requirements, especially with respect to the high throughput generally required which entails a high detection rate of threat material and a low false alarm rate. TeraSCREEN proposes to develop an innovative concept of multi-frequency multi-mode Terahertz and millimeter-wave detection with new automatic detection and classification functionalities. The system developed will demonstrate, at a live control point, the safe automatic detection and classification of objects concealed under clothing, whilst respecting privacy and increasing current throughput rates. This innovative screening system will combine multi-frequency, multi-mode images taken by passive and active subsystems which will scan the subjects and obtain complementary spatial and spectral information, thus allowing for automatic threat recognition. The TeraSCREEN project, which will run from 2013 to 2016, has received funding from the European Union's Seventh Framework Programme under the Security Call. This paper will describe the project objectives and approach.

Nonlinearity-aware based dimensionality reduction and over-sampling for AD/MCI classification from MRI measures.

PubMed

Cao, Peng; Liu, Xiaoli; Yang, Jinzhu; Zhao, Dazhe; Huang, Min; Zhang, Jian; Zaiane, Osmar

2017-12-01

Alzheimer's disease (AD) has been not only a substantial financial burden to the health care system but also an emotional burden to patients and their families. Making accurate diagnosis of AD based on brain magnetic resonance imaging (MRI) is becoming more and more critical and emphasized at the earliest stages. However, the high dimensionality and imbalanced data issues are two major challenges in the study of computer aided AD diagnosis. The greatest limitations of existing dimensionality reduction and over-sampling methods are that they assume a linear relationship between the MRI features (predictor) and the disease status (response). To better capture the complicated but more flexible relationship, we propose a multi-kernel based dimensionality reduction and over-sampling approaches. We combined Marginal Fisher Analysis with ℓ 2,1 -norm based multi-kernel learning (MKMFA) to achieve the sparsity of region-of-interest (ROI), which leads to simultaneously selecting a subset of the relevant brain regions and learning a dimensionality transformation. Meanwhile, a multi-kernel over-sampling (MKOS) was developed to generate synthetic instances in the optimal kernel space induced by MKMFA, so as to compensate for the class imbalanced distribution. We comprehensively evaluate the proposed models for the diagnostic classification (binary class and multi-class classification) including all subjects from the Alzheimer's Disease Neuroimaging Initiative (ADNI) dataset. The experimental results not only demonstrate the proposed method has superior performance over multiple comparable methods, but also identifies relevant imaging biomarkers that are consistent with prior medical knowledge. Copyright © 2017 Elsevier Ltd. All rights reserved.

Cloud-based processing of multi-spectral imaging data

NASA Astrophysics Data System (ADS)

Bernat, Amir S.; Bolton, Frank J.; Weiser, Reuven; Levitz, David

2017-03-01

Multispectral imaging holds great promise as a non-contact tool for the assessment of tissue composition. Performing multi - spectral imaging on a hand held mobile device would allow to bring this technology and with it knowledge to low resource settings to provide a state of the art classification of tissue health. This modality however produces considerably larger data sets than white light imaging and requires preliminary image analysis for it to be used. The data then needs to be analyzed and logged, while not requiring too much of the system resource or a long computation time and battery use by the end point device. Cloud environments were designed to allow offloading of those problems by allowing end point devices (smartphones) to offload computationally hard tasks. For this end we present a method where the a hand held device based around a smartphone captures a multi - spectral dataset in a movie file format (mp4) and compare it to other image format in size, noise and correctness. We present the cloud configuration used for segmenting images to frames where they can later be used for further analysis.

Object-oriented crop mapping and monitoring using multi-temporal polarimetric RADARSAT-2 data

NASA Astrophysics Data System (ADS)

Jiao, Xianfeng; Kovacs, John M.; Shang, Jiali; McNairn, Heather; Walters, Dan; Ma, Baoluo; Geng, Xiaoyuan

2014-10-01

The aim of this paper is to assess the accuracy of an object-oriented classification of polarimetric Synthetic Aperture Radar (PolSAR) data to map and monitor crops using 19 RADARSAT-2 fine beam polarimetric (FQ) images of an agricultural area in North-eastern Ontario, Canada. Polarimetric images and field data were acquired during the 2011 and 2012 growing seasons. The classification and field data collection focused on the main crop types grown in the region, which include: wheat, oat, soybean, canola and forage. The polarimetric parameters were extracted with PolSAR analysis using both the Cloude-Pottier and Freeman-Durden decompositions. The object-oriented classification, with a single date of PolSAR data, was able to classify all five crop types with an accuracy of 95% and Kappa of 0.93; a 6% improvement in comparison with linear-polarization only classification. However, the time of acquisition is crucial. The larger biomass crops of canola and soybean were most accurately mapped, whereas the identification of oat and wheat were more variable. The multi-temporal data using the Cloude-Pottier decomposition parameters provided the best classification accuracy compared to the linear polarizations and the Freeman-Durden decomposition parameters. In general, the object-oriented classifications were able to accurately map crop types by reducing the noise inherent in the SAR data. Furthermore, using the crop classification maps we were able to monitor crop growth stage based on a trend analysis of the radar response. Based on field data from canola crops, there was a strong relationship between the phenological growth stage based on the BBCH scale, and the HV backscatter and entropy.

Manifold alignment with Schroedinger eigenmaps

NASA Astrophysics Data System (ADS)

Johnson, Juan E.; Bachmann, Charles M.; Cahill, Nathan D.

2016-05-01

The sun-target-sensor angle can change during aerial remote sensing. In an attempt to compensate BRDF effects in multi-angular hyperspectral images, the Semi-Supervised Manifold Alignment (SSMA) algorithm pulls data from similar classes together and pushes data from different classes apart. SSMA uses Laplacian Eigenmaps (LE) to preserve the original geometric structure of each local data set independently. In this paper, we replace LE with Spatial-Spectral Schoedinger Eigenmaps (SSSE) which was designed to be a semisupervised enhancement to the to extend the SSMA methodology and improve classification of multi-angular hyperspectral images captured over Hog Island in the Virginia Coast Reserve.

Corpus callosum segmentation using deep neural networks with prior information from multi-atlas images

NASA Astrophysics Data System (ADS)

Park, Gilsoon; Hong, Jinwoo; Lee, Jong-Min

2018-03-01

In human brain, Corpus Callosum (CC) is the largest white matter structure, connecting between right and left hemispheres. Structural features such as shape and size of CC in midsagittal plane are of great significance for analyzing various neurological diseases, for example Alzheimer's disease, autism and epilepsy. For quantitative and qualitative studies of CC in brain MR images, robust segmentation of CC is important. In this paper, we present a novel method for CC segmentation. Our approach is based on deep neural networks and the prior information generated from multi-atlas images. Deep neural networks have recently shown good performance in various image processing field. Convolutional neural networks (CNN) have shown outstanding performance for classification and segmentation in medical image fields. We used convolutional neural networks for CC segmentation. Multi-atlas based segmentation model have been widely used in medical image segmentation because atlas has powerful information about the target structure we want to segment, consisting of MR images and corresponding manual segmentation of the target structure. We combined the prior information, such as location and intensity distribution of target structure (i.e. CC), made from multi-atlas images in CNN training process for more improving training. The CNN with prior information showed better segmentation performance than without.

Astrophysical data mining with GPU. A case study: Genetic classification of globular clusters

NASA Astrophysics Data System (ADS)

Cavuoti, S.; Garofalo, M.; Brescia, M.; Paolillo, M.; Pescape', A.; Longo, G.; Ventre, G.

2014-01-01

We present a multi-purpose genetic algorithm, designed and implemented with GPGPU/CUDA parallel computing technology. The model was derived from our CPU serial implementation, named GAME (Genetic Algorithm Model Experiment). It was successfully tested and validated on the detection of candidate Globular Clusters in deep, wide-field, single band HST images. The GPU version of GAME will be made available to the community by integrating it into the web application DAMEWARE (DAta Mining Web Application REsource, http://dame.dsf.unina.it/beta_info.html), a public data mining service specialized on massive astrophysical data. Since genetic algorithms are inherently parallel, the GPGPU computing paradigm leads to a speedup of a factor of 200× in the training phase with respect to the CPU based version.

A generalized parametric response mapping method for analysis of multi-parametric imaging: A feasibility study with application to glioblastoma.

PubMed

Lausch, Anthony; Yeung, Timothy Pok-Chi; Chen, Jeff; Law, Elton; Wang, Yong; Urbini, Benedetta; Donelli, Filippo; Manco, Luigi; Fainardi, Enrico; Lee, Ting-Yim; Wong, Eugene

2017-11-01

Parametric response map (PRM) analysis of functional imaging has been shown to be an effective tool for early prediction of cancer treatment outcomes and may also be well-suited toward guiding personalized adaptive radiotherapy (RT) strategies such as sub-volume boosting. However, the PRM method was primarily designed for analysis of longitudinally acquired pairs of single-parameter image data. The purpose of this study was to demonstrate the feasibility of a generalized parametric response map analysis framework, which enables analysis of multi-parametric data while maintaining the key advantages of the original PRM method. MRI-derived apparent diffusion coefficient (ADC) and relative cerebral blood volume (rCBV) maps acquired at 1 and 3-months post-RT for 19 patients with high-grade glioma were used to demonstrate the algorithm. Images were first co-registered and then standardized using normal tissue image intensity values. Tumor voxels were then plotted in a four-dimensional Cartesian space with coordinate values equal to a voxel's image intensity in each of the image volumes and an origin defined as the multi-parametric mean of normal tissue image intensity values. Voxel positions were orthogonally projected onto a line defined by the origin and a pre-determined response vector. The voxels are subsequently classified as positive, negative or nil, according to whether projected positions along the response vector exceeded a threshold distance from the origin. The response vector was selected by identifying the direction in which the standard deviation of tumor image intensity values was maximally different between responding and non-responding patients within a training dataset. Voxel classifications were visualized via familiar three-class response maps and then the fraction of tumor voxels associated with each of the classes was investigated for predictive utility analogous to the original PRM method. Independent PRM and MPRM analyses of the contrast-enhancing lesion (CEL) and a 1 cm shell of surrounding peri-tumoral tissue were performed. Prediction using tumor volume metrics was also investigated. Leave-one-out cross validation (LOOCV) was used in combination with permutation testing to assess preliminary predictive efficacy and estimate statistically robust P-values. The predictive endpoint was overall survival (OS) greater than or equal to the median OS of 18.2 months. Single-parameter PRM and multi-parametric response maps (MPRMs) were generated for each patient and used to predict OS via the LOOCV. Tumor volume metrics (P ≥ 0.071 ± 0.01) and single-parameter PRM analyses (P ≥ 0.170 ± 0.01) were not found to be predictive of OS within this study. MPRM analysis of the peri-tumoral region but not the CEL was found to be predictive of OS with a classification sensitivity, specificity and accuracy of 80%, 100%, and 89%, respectively (P = 0.001 ± 0.01). The feasibility of a generalized MPRM analysis framework was demonstrated with improved prediction of overall survival compared to the original single-parameter method when applied to a glioblastoma dataset. The proposed algorithm takes the spatial heterogeneity in multi-parametric response into consideration and enables visualization. MPRM analysis of peri-tumoral regions was shown to have predictive potential supporting further investigation of a larger glioblastoma dataset. © 2017 American Association of Physicists in Medicine.

Skimming Digits: Neuromorphic Classification of Spike-Encoded Images

PubMed Central

Cohen, Gregory K.; Orchard, Garrick; Leng, Sio-Hoi; Tapson, Jonathan; Benosman, Ryad B.; van Schaik, André

2016-01-01

The growing demands placed upon the field of computer vision have renewed the focus on alternative visual scene representations and processing paradigms. Silicon retinea provide an alternative means of imaging the visual environment, and produce frame-free spatio-temporal data. This paper presents an investigation into event-based digit classification using N-MNIST, a neuromorphic dataset created with a silicon retina, and the Synaptic Kernel Inverse Method (SKIM), a learning method based on principles of dendritic computation. As this work represents the first large-scale and multi-class classification task performed using the SKIM network, it explores different training patterns and output determination methods necessary to extend the original SKIM method to support multi-class problems. Making use of SKIM networks applied to real-world datasets, implementing the largest hidden layer sizes and simultaneously training the largest number of output neurons, the classification system achieved a best-case accuracy of 92.87% for a network containing 10,000 hidden layer neurons. These results represent the highest accuracies achieved against the dataset to date and serve to validate the application of the SKIM method to event-based visual classification tasks. Additionally, the study found that using a square pulse as the supervisory training signal produced the highest accuracy for most output determination methods, but the results also demonstrate that an exponential pattern is better suited to hardware implementations as it makes use of the simplest output determination method based on the maximum value. PMID:27199646

A computational study on convolutional feature combination strategies for grade classification in colon cancer using fluorescence microscopy data

NASA Astrophysics Data System (ADS)

Chowdhury, Aritra; Sevinsky, Christopher J.; Santamaria-Pang, Alberto; Yener, Bülent

2017-03-01

The cancer diagnostic workflow is typically performed by highly specialized and trained pathologists, for which analysis is expensive both in terms of time and money. This work focuses on grade classification in colon cancer. The analysis is performed over 3 protein markers; namely E-cadherin, beta actin and colagenIV. In addition, we also use a virtual Hematoxylin and Eosin (HE) stain. This study involves a comparison of various ways in which we can manipulate the information over the 4 different images of the tissue samples and come up with a coherent and unified response based on the data at our disposal. Pre- trained convolutional neural networks (CNNs) is the method of choice for feature extraction. The AlexNet architecture trained on the ImageNet database is used for this purpose. We extract a 4096 dimensional feature vector corresponding to the 6th layer in the network. Linear SVM is used to classify the data. The information from the 4 different images pertaining to a particular tissue sample; are combined using the following techniques: soft voting, hard voting, multiplication, addition, linear combination, concatenation and multi-channel feature extraction. We observe that we obtain better results in general than when we use a linear combination of the feature representations. We use 5-fold cross validation to perform the experiments. The best results are obtained when the various features are linearly combined together resulting in a mean accuracy of 91.27%.

Semantic segmentation of forest stands of pure species combining airborne lidar data and very high resolution multispectral imagery

NASA Astrophysics Data System (ADS)

Dechesne, Clément; Mallet, Clément; Le Bris, Arnaud; Gouet-Brunet, Valérie

2017-04-01

Forest stands are the basic units for forest inventory and mapping. Stands are defined as large forested areas (e.g., ⩾ 2 ha) of homogeneous tree species composition and age. Their accurate delineation is usually performed by human operators through visual analysis of very high resolution (VHR) infra-red images. This task is tedious, highly time consuming, and should be automated for scalability and efficient updating purposes. In this paper, a method based on the fusion of airborne lidar data and VHR multispectral images is proposed for the automatic delineation of forest stands containing one dominant species (purity superior to 75%). This is the key preliminary task for forest land-cover database update. The multispectral images give information about the tree species whereas 3D lidar point clouds provide geometric information on the trees and allow their individual extraction. Multi-modal features are computed, both at pixel and object levels: the objects are individual trees extracted from lidar data. A supervised classification is then performed at the object level in order to coarsely discriminate the existing tree species in each area of interest. The classification results are further processed to obtain homogeneous areas with smooth borders by employing an energy minimum framework, where additional constraints are joined to form the energy function. The experimental results show that the proposed method provides very satisfactory results both in terms of stand labeling and delineation (overall accuracy ranges between 84 % and 99 %).

Radiogenomic analysis of lower grade glioma: a pilot multi-institutional study shows an association between quantitative image features and tumor genomics

NASA Astrophysics Data System (ADS)

Mazurowski, Maciej A.; Clark, Kal; Czarnek, Nicholas M.; Shamsesfandabadi, Parisa; Peters, Katherine B.; Saha, Ashirbani

2017-03-01

Recent studies showed that genomic analysis of lower grade gliomas can be very effective for stratification of patients into groups with different prognosis and proposed specific genomic classifications. In this study, we explore the association of one of those genomic classifications with imaging parameters to determine whether imaging could serve a similar role to genomics in cancer patient treatment. Specifically, we analyzed imaging and genomics data for 110 patients from 5 institutions from The Cancer Genome Atlas and The Cancer Imaging Archive datasets. The analyzed imaging data contained preoperative FLAIR sequence for each patient. The images were analyzed using the in-house algorithms which quantify 2D and 3D aspects of the tumor shape. Genomic data consisted of a cluster of clusters classification proposed in a very recent and leading publication in the field of lower grade glioma genomics. Our statistical analysis showed that there is a strong association between the tumor cluster-of-clusters subtype and two imaging features: bounding ellipsoid volume ratio and angular standard deviation. This result shows high promise for the potential use of imaging as a surrogate measure for genomics in the decision process regarding treatment of lower grade glioma patients.

A minimum spanning forest based classification method for dedicated breast CT images

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pike, Robert; Sechopoulos, Ioannis; Fei, Baowei, E-mail: bfei@emory.edu

Purpose: To develop and test an automated algorithm to classify different types of tissue in dedicated breast CT images. Methods: Images of a single breast of five different patients were acquired with a dedicated breast CT clinical prototype. The breast CT images were processed by a multiscale bilateral filter to reduce noise while keeping edge information and were corrected to overcome cupping artifacts. As skin and glandular tissue have similar CT values on breast CT images, morphologic processing is used to identify the skin based on its position information. A support vector machine (SVM) is trained and the resulting modelmore » used to create a pixelwise classification map of fat and glandular tissue. By combining the results of the skin mask with the SVM results, the breast tissue is classified as skin, fat, and glandular tissue. This map is then used to identify markers for a minimum spanning forest that is grown to segment the image using spatial and intensity information. To evaluate the authors’ classification method, they use DICE overlap ratios to compare the results of the automated classification to those obtained by manual segmentation on five patient images. Results: Comparison between the automatic and the manual segmentation shows that the minimum spanning forest based classification method was able to successfully classify dedicated breast CT image with average DICE ratios of 96.9%, 89.8%, and 89.5% for fat, glandular, and skin tissue, respectively. Conclusions: A 2D minimum spanning forest based classification method was proposed and evaluated for classifying the fat, skin, and glandular tissue in dedicated breast CT images. The classification method can be used for dense breast tissue quantification, radiation dose assessment, and other applications in breast imaging.« less

Training site statistics from Landsat and Seasat satellite imagery registered to a common map base

NASA Technical Reports Server (NTRS)

Clark, J.

1981-01-01

Landsat and Seasat satellite imagery and training site boundary coordinates were registered to a common Universal Transverse Mercator map base in the Newport Beach area of Orange County, California. The purpose was to establish a spatially-registered, multi-sensor data base which would test the use of Seasat synthetic aperture radar imagery to improve spectral separability of channels used for land use classification of an urban area. Digital image processing techniques originally developed for the digital mosaics of the California Desert and the State of Arizona were adapted to spatially register multispectral and radar data. Techniques included control point selection from imagery and USGS topographic quadrangle maps, control point cataloguing with the Image Based Information System, and spatial and spectral rectifications of the imagery. The radar imagery was pre-processed to reduce its tendency toward uniform data distributions, so that training site statistics for selected Landsat and pre-processed Seasat imagery indicated good spectral separation between channels.

Interactive lesion segmentation on dynamic contrast enhanced breast MRI using a Markov model

NASA Astrophysics Data System (ADS)

Wu, Qiu; Salganicoff, Marcos; Krishnan, Arun; Fussell, Donald S.; Markey, Mia K.

2006-03-01

The purpose of this study is to develop a method for segmenting lesions on Dynamic Contrast-Enhanced (DCE) breast MRI. DCE breast MRI, in which the breast is imaged before, during, and after the administration of a contrast agent, enables a truly 3D examination of breast tissues. This functional angiogenic imaging technique provides noninvasive assessment of microcirculatory characteristics of tissues in addition to traditional anatomical structure information. Since morphological features and kinetic curves from segmented lesions are to be used for diagnosis and treatment decisions, lesion segmentation is a key pre-processing step for classification. In our study, the ROI is defined by a bounding box containing the enhancement region in the subtraction image, which is generated by subtracting the pre-contrast image from 1st post-contrast image. A maximum a posteriori (MAP) estimate of the class membership (lesion vs. non-lesion) for each voxel is obtained using the Iterative Conditional Mode (ICM) method. The prior distribution of the class membership is modeled as a multi-level logistic model, a Markov Random Field model in which the class membership of each voxel is assumed to depend upon its nearest neighbors only. The likelihood distribution is assumed to be Gaussian. The parameters of each Gaussian distribution are estimated from a dozen voxels manually selected as representative of the class. The experimental segmentation results demonstrate anatomically plausible breast tissue segmentation and the predicted class membership of voxels from the interactive segmentation algorithm agrees with the manual classifications made by inspection of the kinetic enhancement curves. The proposed method is advantageous in that it is efficient, flexible, and robust.

Object Based Image Analysis Combining High Spatial Resolution Imagery and Laser Point Clouds for Urban Land Cover

NASA Astrophysics Data System (ADS)

Zou, Xiaoliang; Zhao, Guihua; Li, Jonathan; Yang, Yuanxi; Fang, Yong

2016-06-01

With the rapid developments of the sensor technology, high spatial resolution imagery and airborne Lidar point clouds can be captured nowadays, which make classification, extraction, evaluation and analysis of a broad range of object features available. High resolution imagery, Lidar dataset and parcel map can be widely used for classification as information carriers. Therefore, refinement of objects classification is made possible for the urban land cover. The paper presents an approach to object based image analysis (OBIA) combing high spatial resolution imagery and airborne Lidar point clouds. The advanced workflow for urban land cover is designed with four components. Firstly, colour-infrared TrueOrtho photo and laser point clouds were pre-processed to derive the parcel map of water bodies and nDSM respectively. Secondly, image objects are created via multi-resolution image segmentation integrating scale parameter, the colour and shape properties with compactness criterion. Image can be subdivided into separate object regions. Thirdly, image objects classification is performed on the basis of segmentation and a rule set of knowledge decision tree. These objects imagery are classified into six classes such as water bodies, low vegetation/grass, tree, low building, high building and road. Finally, in order to assess the validity of the classification results for six classes, accuracy assessment is performed through comparing randomly distributed reference points of TrueOrtho imagery with the classification results, forming the confusion matrix and calculating overall accuracy and Kappa coefficient. The study area focuses on test site Vaihingen/Enz and a patch of test datasets comes from the benchmark of ISPRS WG III/4 test project. The classification results show higher overall accuracy for most types of urban land cover. Overall accuracy is 89.5% and Kappa coefficient equals to 0.865. The OBIA approach provides an effective and convenient way to combine high resolution imagery and Lidar ancillary data for classification of urban land cover.

A comparison of digital multi-spectral imagery versus conventional photography for mapping seagrass in Indian River Lagoon, Florida

DOE Office of Scientific and Technical Information (OSTI.GOV)

Virnstein, R.; Tepera, M.; Beazley, L.

1997-06-01

A pilot study is very briefly summarized in the article. The study tested the potential of multi-spectral digital imagery for discrimination of seagrass densities and species, algae, and bottom types. Imagery was obtained with the Compact Airborne Spectral Imager (casi) and two flight lines flown with hyper-spectral mode. The photogrammetric method used allowed interpretation of the highest quality product, eliminating limitations caused by outdated or poor quality base maps and the errors associated with transfer of polygons. Initial image analysis indicates that the multi-spectral imagery has several advantages, including sophisticated spectral signature recognition and classification, ease of geo-referencing, and rapidmore » mosaicking.« less

Modeling Habitat Suitability of Migratory Birds from Remote Sensing Images Using Convolutional Neural Networks.

PubMed

Su, Jin-He; Piao, Ying-Chao; Luo, Ze; Yan, Bao-Ping

2018-04-26

With the application of various data acquisition devices, a large number of animal movement data can be used to label presence data in remote sensing images and predict species distribution. In this paper, a two-stage classification approach for combining movement data and moderate-resolution remote sensing images was proposed. First, we introduced a new density-based clustering method to identify stopovers from migratory birds’ movement data and generated classification samples based on the clustering result. We split the remote sensing images into 16 × 16 patches and labeled them as positive samples if they have overlap with stopovers. Second, a multi-convolution neural network model is proposed for extracting the features from temperature data and remote sensing images, respectively. Then a Support Vector Machines (SVM) model was used to combine the features together and predict classification results eventually. The experimental analysis was carried out on public Landsat 5 TM images and a GPS dataset was collected on 29 birds over three years. The results indicated that our proposed method outperforms the existing baseline methods and was able to achieve good performance in habitat suitability prediction.

A Multi-modal, Discriminative and Spatially Invariant CNN for RGB-D Object Labeling.

PubMed

Asif, Umar; Bennamoun, Mohammed; Sohel, Ferdous

2017-08-30

While deep convolutional neural networks have shown a remarkable success in image classification, the problems of inter-class similarities, intra-class variances, the effective combination of multimodal data, and the spatial variability in images of objects remain to be major challenges. To address these problems, this paper proposes a novel framework to learn a discriminative and spatially invariant classification model for object and indoor scene recognition using multimodal RGB-D imagery. This is achieved through three postulates: 1) spatial invariance - this is achieved by combining a spatial transformer network with a deep convolutional neural network to learn features which are invariant to spatial translations, rotations, and scale changes, 2) high discriminative capability - this is achieved by introducing Fisher encoding within the CNN architecture to learn features which have small inter-class similarities and large intra-class compactness, and 3) multimodal hierarchical fusion - this is achieved through the regularization of semantic segmentation to a multi-modal CNN architecture, where class probabilities are estimated at different hierarchical levels (i.e., imageand pixel-levels), and fused into a Conditional Random Field (CRF)- based inference hypothesis, the optimization of which produces consistent class labels in RGB-D images. Extensive experimental evaluations on RGB-D object and scene datasets, and live video streams (acquired from Kinect) show that our framework produces superior object and scene classification results compared to the state-of-the-art methods.

Brain Tumor Segmentation Using Deep Belief Networks and Pathological Knowledge.

PubMed

Zhan, Tianming; Chen, Yi; Hong, Xunning; Lu, Zhenyu; Chen, Yunjie

2017-01-01

In this paper, we propose an automatic brain tumor segmentation method based on Deep Belief Networks (DBNs) and pathological knowledge. The proposed method is targeted against gliomas (both low and high grade) obtained in multi-sequence magnetic resonance images (MRIs). Firstly, a novel deep architecture is proposed to combine the multi-sequences intensities feature extraction with classification to get the classification probabilities of each voxel. Then, graph cut based optimization is executed on the classification probabilities to strengthen the spatial relationships of voxels. At last, pathological knowledge of gliomas is applied to remove some false positives. Our method was validated in the Brain Tumor Segmentation Challenge 2012 and 2013 databases (BRATS 2012, 2013). The performance of segmentation results demonstrates our proposal providing a competitive solution with stateof- the-art methods. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

Use of feature extraction techniques for the texture and context information in ERTS imagery: Spectral and textural processing of ERTS imagery. [classification of Kansas land use

NASA Technical Reports Server (NTRS)

Haralick, R. H. (Principal Investigator); Bosley, R. J.

1974-01-01

The author has identified the following significant results. A procedure was developed to extract cross-band textural features from ERTS MSS imagery. Evolving from a single image texture extraction procedure which uses spatial dependence matrices to measure relative co-occurrence of nearest neighbor grey tones, the cross-band texture procedure uses the distribution of neighboring grey tone N-tuple differences to measure the spatial interrelationships, or co-occurrences, of the grey tone N-tuples present in a texture pattern. In both procedures, texture is characterized in such a way as to be invariant under linear grey tone transformations. However, the cross-band procedure complements the single image procedure by extracting texture information and spectral information contained in ERTS multi-images. Classification experiments show that when used alone, without spectral processing, the cross-band texture procedure extracts more information than the single image texture analysis. Results show an improvement in average correct classification from 86.2% to 88.8% for ERTS image no. 1021-16333 with the cross-band texture procedure. However, when used together with spectral features, the single image texture plus spectral features perform better than the cross-band texture plus spectral features, with an average correct classification of 93.8% and 91.6%, respectively.

Forest tree species clssification based on airborne hyper-spectral imagery

NASA Astrophysics Data System (ADS)

Dian, Yuanyong; Li, Zengyuan; Pang, Yong

2013-10-01

Forest precision classification products were the basic data for surveying of forest resource, updating forest subplot information, logging and design of forest. However, due to the diversity of stand structure, complexity of the forest growth environment, it's difficult to discriminate forest tree species using multi-spectral image. The airborne hyperspectral images can achieve the high spatial and spectral resolution imagery of forest canopy, so it will good for tree species level classification. The aim of this paper was to test the effective of combining spatial and spectral features in airborne hyper-spectral image classification. The CASI hyper spectral image data were acquired from Liangshui natural reserves area. Firstly, we use the MNF (minimum noise fraction) transform method for to reduce the hyperspectral image dimensionality and highlighting variation. And secondly, we use the grey level co-occurrence matrix (GLCM) to extract the texture features of forest tree canopy from the hyper-spectral image, and thirdly we fused the texture and the spectral features of forest canopy to classify the trees species using support vector machine (SVM) with different kernel functions. The results showed that when using the SVM classifier, MNF and texture-based features combined with linear kernel function can achieve the best overall accuracy which was 85.92%. It was also confirm that combine the spatial and spectral information can improve the accuracy of tree species classification.

Cascaded discrimination of normal, abnormal, and confounder classes in histopathology: Gleason grading of prostate cancer

PubMed Central

2012-01-01

Background Automated classification of histopathology involves identification of multiple classes, including benign, cancerous, and confounder categories. The confounder tissue classes can often mimic and share attributes with both the diseased and normal tissue classes, and can be particularly difficult to identify, both manually and by automated classifiers. In the case of prostate cancer, they may be several confounding tissue types present in a biopsy sample, posing as major sources of diagnostic error for pathologists. Two common multi-class approaches are one-shot classification (OSC), where all classes are identified simultaneously, and one-versus-all (OVA), where a “target” class is distinguished from all “non-target” classes. OSC is typically unable to handle discrimination of classes of varying similarity (e.g. with images of prostate atrophy and high grade cancer), while OVA forces several heterogeneous classes into a single “non-target” class. In this work, we present a cascaded (CAS) approach to classifying prostate biopsy tissue samples, where images from different classes are grouped to maximize intra-group homogeneity while maximizing inter-group heterogeneity. Results We apply the CAS approach to categorize 2000 tissue samples taken from 214 patient studies into seven classes: epithelium, stroma, atrophy, prostatic intraepithelial neoplasia (PIN), and prostate cancer Gleason grades 3, 4, and 5. A series of increasingly granular binary classifiers are used to split the different tissue classes until the images have been categorized into a single unique class. Our automatically-extracted image feature set includes architectural features based on location of the nuclei within the tissue sample as well as texture features extracted on a per-pixel level. The CAS strategy yields a positive predictive value (PPV) of 0.86 in classifying the 2000 tissue images into one of 7 classes, compared with the OVA (0.77 PPV) and OSC approaches (0.76 PPV). Conclusions Use of the CAS strategy increases the PPV for a multi-category classification system over two common alternative strategies. In classification problems such as histopathology, where multiple class groups exist with varying degrees of heterogeneity, the CAS system can intelligently assign class labels to objects by performing multiple binary classifications according to domain knowledge. PMID:23110677

Summer Crop Classification by Multi-Temporal COSMO-SkyMed® Data

NASA Astrophysics Data System (ADS)

Guarini, Rocchina; Bruzzone, Lorenzo; Santoni, Massimo; Vuolo, Francesco; Luigi, Dini

2016-08-01

In this study, we propose a multi-temporal and multi- polarization approach to discriminate different crop types in the Marchefel region, Austria. The sensitivity of X-band COSMO-SkyMed® (CSK®) data with respect to five crop classes, namely carrot, corn, potato, soybean and sugarbeet is investigated. In particular, the capabilities of dual-polarization (StripMap PingPong) HH/HV, and single-polarization (StripMap Himage), HH and VH, in distinguishing among the five crop types are evaluated. A total of twenty-one Himage and ten PingPong images were acquired in a seven-months period, from April to October 2014. Therefore, the backscattering coefficient was extracted for each dataset and the classification was performed using a pixel-based support vector machine (SVM) approach. The accuracy of the obtained crop classifications was assessed by comparing them with ground truth. The dual-polarization results are contrasted between the HH and HV polarization, and with single-polarization ones (HH and VH polarizations). The best accuracy is obtained by using time-series of StripMap Himage data, at VH polarization, covering the whole season period.

Investigation on changes in complex vegetation coverage using multi-temporal landsat data of Western Black Sea region--a case study.

PubMed

Coban, Huseyin Oguz; Koc, Ayhan; Eker, Mehmet

2010-01-01

Previous studies have been able to successfully detect changes in gently-sloping forested areas with low-diversity and homogeneous vegetation cover using medium-resolution satellite data such as landsat. The aim of the present study is to examine the capacity of multi-temporal landsat data to identify changes in forested areas with mixed vegetation and generally located on steep slopes or non-uniform topography landsat thematic mapper (TM) and landsat enhanced thematic mapperplus (ETM+) data for the years 1987-2000 was used to detect changes within a 19,500 ha forested area in the Western Black sea region of Turkey. The data comply with the forest cover type maps previously created for forest management plans of the research area. The methods used to detect changes were: post-classification comparison, image differencing, image rationing and NDVI (Normalized Difference Vegetation Index) differencing methods. Following the supervised classification process, error matrices were used to evaluate the accuracy of classified images obtained. The overall accuracy has been calculated as 87.59% for 1987 image and as 91.81% for 2000 image. General kappa statistics have been calculated as 0.8543 and 0.9038 for 1987 and 2000, respectively. The changes identified via the post-classification comparison method were compared with other change detetion methods. Maximum coherence was found to be 74.95% at 4/3 band rate. The NDVI difference and 3rd band difference methods achieved the same coherence with slight variations. The results suggest that landsat satellite data accurately conveys the temporal changes which occur on steeply-sloping forested areas with a mixed structure, providing a limited amount of detail but with a high level of accuracy. Moreover it has been decided that the post-classification comparison method can meet the needs of forestry activities better than other methods as it provides information about the direction of these changes.

Integrated 68Gallium Labelled Prostate-Specific Membrane Antigen-11 Positron Emission Tomography/Magnetic Resonance Imaging Enhances Discriminatory Power of Multi-Parametric Prostate Magnetic Resonance Imaging.

PubMed

Al-Bayati, Mohammad; Grueneisen, Johannes; Lütje, Susanne; Sawicki, Lino M; Suntharalingam, Saravanabavaan; Tschirdewahn, Stephan; Forsting, Michael; Rübben, Herbert; Herrmann, Ken; Umutlu, Lale; Wetter, Axel

2018-01-01

To evaluate diagnostic accuracy of integrated 68Gallium labelled prostate-specific membrane antigen (68Ga-PSMA)-11 positron emission tomography (PET)/MRI in patients with primary prostate cancer (PCa) as compared to multi-parametric MRI. A total of 22 patients with recently diagnosed primary PCa underwent clinically indicated 68Ga-PSMA-11 PET/CT for initial staging followed by integrated 68Ga-PSMA-11 PET/MRI. Images of multi-parametric magnetic resonance imaging (mpMRI), PET and PET/MRI were evaluated separately by applying Prostate Imaging Reporting and Data System (PIRADSv2) for mpMRI and a 5-point Likert scale for PET and PET/MRI. Results were compared with pathology reports of biopsy or resection. Statistical analyses including receiver operating characteristics analysis were performed to compare the diagnostic performance of mpMRI, PET and PET/MRI. PET and integrated PET/MRI demonstrated a higher diagnostic accuracy than mpMRI (area under the curve: mpMRI: 0.679, PET and PET/MRI: 0.951). The proportion of equivocal results (PIRADS 3 and Likert 3) was considerably higher in mpMRI than in PET and PET/MRI. In a notable proportion of equivocal PIRADS results, PET led to a correct shift towards higher suspicion of malignancy and enabled correct lesion classification. Integrated 68Ga-PSMA-11 PET/MRI demonstrates higher diagnostic accuracy than mpMRI and is particularly valuable in tumours with equivocal results from PIRADS classification. © 2018 S. Karger AG, Basel.

Forest Stand Segmentation Using Airborne LIDAR Data and Very High Resolution Multispectral Imagery

NASA Astrophysics Data System (ADS)

Dechesne, Clément; Mallet, Clément; Le Bris, Arnaud; Gouet, Valérie; Hervieu, Alexandre

2016-06-01

Forest stands are the basic units for forest inventory and mapping. Stands are large forested areas (e.g., ≥ 2 ha) of homogeneous tree species composition. The accurate delineation of forest stands is usually performed by visual analysis of human operators on very high resolution (VHR) optical images. This work is highly time consuming and should be automated for scalability purposes. In this paper, a method based on the fusion of airborne laser scanning data (or lidar) and very high resolution multispectral imagery for automatic forest stand delineation and forest land-cover database update is proposed. The multispectral images give access to the tree species whereas 3D lidar point clouds provide geometric information on the trees. Therefore, multi-modal features are computed, both at pixel and object levels. The objects are individual trees extracted from lidar data. A supervised classification is performed at the object level on the computed features in order to coarsely discriminate the existing tree species in the area of interest. The analysis at tree level is particularly relevant since it significantly improves the tree species classification. A probability map is generated through the tree species classification and inserted with the pixel-based features map in an energetical framework. The proposed energy is then minimized using a standard graph-cut method (namely QPBO with α-expansion) in order to produce a segmentation map with a controlled level of details. Comparison with an existing forest land cover database shows that our method provides satisfactory results both in terms of stand labelling and delineation (matching ranges between 94% and 99%).

Prostate segmentation by sparse representation based classification

PubMed Central

Gao, Yaozong; Liao, Shu; Shen, Dinggang

2012-01-01

Purpose: The segmentation of prostate in CT images is of essential importance to external beam radiotherapy, which is one of the major treatments for prostate cancer nowadays. During the radiotherapy, the prostate is radiated by high-energy x rays from different directions. In order to maximize the dose to the cancer and minimize the dose to the surrounding healthy tissues (e.g., bladder and rectum), the prostate in the new treatment image needs to be accurately localized. Therefore, the effectiveness and efficiency of external beam radiotherapy highly depend on the accurate localization of the prostate. However, due to the low contrast of the prostate with its surrounding tissues (e.g., bladder), the unpredicted prostate motion, and the large appearance variations across different treatment days, it is challenging to segment the prostate in CT images. In this paper, the authors present a novel classification based segmentation method to address these problems. Methods: To segment the prostate, the proposed method first uses sparse representation based classification (SRC) to enhance the prostate in CT images by pixel-wise classification, in order to overcome the limitation of poor contrast of the prostate images. Then, based on the classification results, previous segmented prostates of the same patient are used as patient-specific atlases to align onto the current treatment image and the majority voting strategy is finally adopted to segment the prostate. In order to address the limitations of the traditional SRC in pixel-wise classification, especially for the purpose of segmentation, the authors extend SRC from the following four aspects: (1) A discriminant subdictionary learning method is proposed to learn a discriminant and compact representation of training samples for each class so that the discriminant power of SRC can be increased and also SRC can be applied to the large-scale pixel-wise classification. (2) The L1 regularized sparse coding is replaced by the elastic net in order to obtain a smooth and clear prostate boundary in the classification result. (3) Residue-based linear regression is incorporated to improve the classification performance and to extend SRC from hard classification to soft classification. (4) Iterative SRC is proposed by using context information to iteratively refine the classification results. Results: The proposed method has been comprehensively evaluated on a dataset consisting of 330 CT images from 24 patients. The effectiveness of the extended SRC has been validated by comparing it with the traditional SRC based on the proposed four extensions. The experimental results show that our extended SRC can obtain not only more accurate classification results but also smoother and clearer prostate boundary than the traditional SRC. Besides, the comparison with other five state-of-the-art prostate segmentation methods indicates that our method can achieve better performance than other methods under comparison. Conclusions: The authors have proposed a novel prostate segmentation method based on the sparse representation based classification, which can achieve considerably accurate segmentation results in CT prostate segmentation. PMID:23039673

GENIE: a hybrid genetic algorithm for feature classification in multispectral images

NASA Astrophysics Data System (ADS)

Perkins, Simon J.; Theiler, James P.; Brumby, Steven P.; Harvey, Neal R.; Porter, Reid B.; Szymanski, John J.; Bloch, Jeffrey J.

2000-10-01

We consider the problem of pixel-by-pixel classification of a multi- spectral image using supervised learning. Conventional spuervised classification techniques such as maximum likelihood classification and less conventional ones s uch as neural networks, typically base such classifications solely on the spectral components of each pixel. It is easy to see why: the color of a pixel provides a nice, bounded, fixed dimensional space in which these classifiers work well. It is often the case however, that spectral information alone is not sufficient to correctly classify a pixel. Maybe spatial neighborhood information is required as well. Or maybe the raw spectral components do not themselves make for easy classification, but some arithmetic combination of them would. In either of these cases we have the problem of selecting suitable spatial, spectral or spatio-spectral features that allow the classifier to do its job well. The number of all possible such features is extremely large. How can we select a suitable subset? We have developed GENIE, a hybrid learning system that combines a genetic algorithm that searches a space of image processing operations for a set that can produce suitable feature planes, and a more conventional classifier which uses those feature planes to output a final classification. In this paper we show that the use of a hybrid GA provides significant advantages over using either a GA alone or more conventional classification methods alone. We present results using high-resolution IKONOS data, looking for regions of burned forest and for roads.

Age determination of vessel wall hematoma in spontaneous cervical artery dissection: A multi-sequence 3T Cardiovascular Magnetic resonance study

PubMed Central

2011-01-01

Background Previously proposed classifications for carotid plaque and cerebral parenchymal hemorrhages are used to estimate the age of hematoma according to its signal intensities on T1w and T2w MR images. Using these classifications, we systematically investigated the value of cardiovascular magnetic resonance (CMR) in determining the age of vessel wall hematoma (VWH) in patients with spontaneous cervical artery dissection (sCAD). Methods 35 consecutive patients (mean age 43.6 ± 9.8 years) with sCAD received a cervical multi-sequence 3T CMR with fat-saturated black-blood T1w-, T2w- and TOF images. Age of sCAD was defined as time between onset of symptoms (stroke, TIA or Horner's syndrome) and the CMR scan. VWH were categorized into hyperacute, acute, early subacute, late subacute and chronic based on their signal intensities on T1w- and T2w images. Results The mean age of sCAD was 2.0, 5.8, 15.7 and 58.7 days in patients with acute, early subacute, late subacute and chronic VWH as classified by CMR (p < 0.001 for trend). Agreement was moderate between VWH types in our study and the previously proposed time scheme of signal evolution for cerebral hemorrhage, Cohen's kappa 0.43 (p < 0.001). There was a strong agreement of CMR VWH classification compared to the time scheme which was proposed for carotid intraplaque hematomas with Cohen's kappa of 0.74 (p < 0.001). Conclusions Signal intensities of VWH in sCAD vary over time and multi-sequence CMR can help to determine the age of an arterial dissection. Furthermore, findings of this study suggest that the time course of carotid hematomas differs from that of cerebral hematomas. PMID:22122756

Mapping Crop Patterns in Central US Agricultural Systems from 2000 to 2014 Based on Landsat Data: To What Degree Does Fusing MODIS Data Improve Classification Accuracies?

NASA Astrophysics Data System (ADS)

Zhu, L.; Radeloff, V.; Ives, A. R.; Barton, B.

2015-12-01

Deriving crop pattern with high accuracy is of great importance for characterizing landscape diversity, which affects the resilience of food webs in agricultural systems in the face of climatic and land cover changes. Landsat sensors were originally designed to monitor agricultural areas, and both radiometric and spatial resolution are optimized for monitoring large agricultural fields. Unfortunately, few clear Landsat images per year are available, which has limited the use of Landsat for making crop classification, and this situation is worse in cloudy areas of the Earth. Meanwhile, the MODerate Resolution Imaging Spectroradiometer (MODIS) data has better temporal resolution but cannot capture fine spatial heterogeneity of agricultural systems. Our question was to what extent fusing imagery from both sensors could improve crop classifications. We utilized the Spatial and Temporal Adaptive Reflectance Fusion Model (STARFM) algorithm to simulate Landsat-like images at MODIS temporal resolution. Based on Random Forests (RF) classifier, we tested whether and by what degree crop maps from 2000 to 2014 of the Arlington Agricultural Research Station (Wisconsin, USA) were improved by integrating available clear Landsat images each year with synthetic images. We predicted that the degree to which classification accuracy can be improved by incorporating synthetic imagery depends on the number and acquisition time of clear Landsat images. Moreover, multi-season data are essential for mapping crop types by capturing their phenological dynamics, and STARFM-simulated images can be used to compensate for missing Landsat observations. Our study is helpful for eliminating the limits of the use of Landsat data in mapping crop patterns, and can provide a benchmark of accuracy when choosing STARFM-simulated images to make crop classification at broader scales.

Land cover change of watersheds in Southern Guam from 1973 to 2001.

PubMed

Wen, Yuming; Khosrowpanah, Shahram; Heitz, Leroy

2011-08-01

Land cover change can be caused by human-induced activities and natural forces. Land cover change in watershed level has been a main concern for a long time in the world since watersheds play an important role in our life and environment. This paper is focused on how to apply Landsat Multi-Spectral Scanner (MSS) satellite image of 1973 and Landsat Thematic Mapper (TM) satellite image of 2001 to determine the land cover changes of coastal watersheds from 1973 to 2001. GIS and remote sensing are integrated to derive land cover information from Landsat satellite images of 1973 and 2001. The land cover classification is based on supervised classification method in remote sensing software ERDAS IMAGINE. Historical GIS data is used to replace the areas covered by clouds or shadows in the image of 1973 to improve classification accuracy. Then, temporal land cover is utilized to determine land cover change of coastal watersheds in southern Guam. The overall classification accuracies for Landsat MSS image of 1973 and Landsat TM image of 2001 are 82.74% and 90.42%, respectively. The overall classification of Landsat MSS image is particularly satisfactory considering its coarse spatial resolution and relatively bad data quality because of lots of clouds and shadows in the image. Watershed land cover change in southern Guam is affected greatly by anthropogenic activities. However, natural forces also affect land cover in space and time. Land cover information and change in watersheds can be applied for watershed management and planning, and environmental modeling and assessment. Based on spatio-temporal land cover information, the interaction behavior between human and environment may be evaluated. The findings in this research will be useful to similar research in other tropical islands.

A Minimum Spanning Forest Based Method for Noninvasive Cancer Detection with Hyperspectral Imaging

PubMed Central

Pike, Robert; Lu, Guolan; Wang, Dongsheng; Chen, Zhuo Georgia; Fei, Baowei

2016-01-01

Goal The purpose of this paper is to develop a classification method that combines both spectral and spatial information for distinguishing cancer from healthy tissue on hyperspectral images in an animal model. Methods An automated algorithm based on a minimum spanning forest (MSF) and optimal band selection has been proposed to classify healthy and cancerous tissue on hyperspectral images. A support vector machine (SVM) classifier is trained to create a pixel-wise classification probability map of cancerous and healthy tissue. This map is then used to identify markers that are used to compute mutual information for a range of bands in the hyperspectral image and thus select the optimal bands. An MSF is finally grown to segment the image using spatial and spectral information. Conclusion The MSF based method with automatically selected bands proved to be accurate in determining the tumor boundary on hyperspectral images. Significance Hyperspectral imaging combined with the proposed classification technique has the potential to provide a noninvasive tool for cancer detection. PMID:26285052

Benchmark of Machine Learning Methods for Classification of a SENTINEL-2 Image

NASA Astrophysics Data System (ADS)

Pirotti, F.; Sunar, F.; Piragnolo, M.

2016-06-01

Thanks to mainly ESA and USGS, a large bulk of free images of the Earth is readily available nowadays. One of the main goals of remote sensing is to label images according to a set of semantic categories, i.e. image classification. This is a very challenging issue since land cover of a specific class may present a large spatial and spectral variability and objects may appear at different scales and orientations. In this study, we report the results of benchmarking 9 machine learning algorithms tested for accuracy and speed in training and classification of land-cover classes in a Sentinel-2 dataset. The following machine learning methods (MLM) have been tested: linear discriminant analysis, k-nearest neighbour, random forests, support vector machines, multi layered perceptron, multi layered perceptron ensemble, ctree, boosting, logarithmic regression. The validation is carried out using a control dataset which consists of an independent classification in 11 land-cover classes of an area about 60 km2, obtained by manual visual interpretation of high resolution images (20 cm ground sampling distance) by experts. In this study five out of the eleven classes are used since the others have too few samples (pixels) for testing and validating subsets. The classes used are the following: (i) urban (ii) sowable areas (iii) water (iv) tree plantations (v) grasslands. Validation is carried out using three different approaches: (i) using pixels from the training dataset (train), (ii) using pixels from the training dataset and applying cross-validation with the k-fold method (kfold) and (iii) using all pixels from the control dataset. Five accuracy indices are calculated for the comparison between the values predicted with each model and control values over three sets of data: the training dataset (train), the whole control dataset (full) and with k-fold cross-validation (kfold) with ten folds. Results from validation of predictions of the whole dataset (full) show the random forests method with the highest values; kappa index ranging from 0.55 to 0.42 respectively with the most and least number pixels for training. The two neural networks (multi layered perceptron and its ensemble) and the support vector machines - with default radial basis function kernel - methods follow closely with comparable performance.

Automatic grade classification of Barretts Esophagus through feature enhancement

NASA Astrophysics Data System (ADS)

Ghatwary, Noha; Ahmed, Amr; Ye, Xujiong; Jalab, Hamid

2017-03-01

Barretts Esophagus (BE) is a precancerous condition that affects the esophagus tube and has the risk of developing esophageal adenocarcinoma. BE is the process of developing metaplastic intestinal epithelium and replacing the normal cells in the esophageal area. The detection of BE is considered difficult due to its appearance and properties. The diagnosis is usually done through both endoscopy and biopsy. Recently, Computer Aided Diagnosis systems have been developed to support physicians opinion when facing difficulty in detection/classification in different types of diseases. In this paper, an automatic classification of Barretts Esophagus condition is introduced. The presented method enhances the internal features of a Confocal Laser Endomicroscopy (CLE) image by utilizing a proposed enhancement filter. This filter depends on fractional differentiation and integration that improve the features in the discrete wavelet transform of an image. Later on, various features are extracted from each enhanced image on different levels for the multi-classification process. Our approach is validated on a dataset that consists of a group of 32 patients with 262 images with different histology grades. The experimental results demonstrated the efficiency of the proposed technique. Our method helps clinicians for more accurate classification. This potentially helps to reduce the need for biopsies needed for diagnosis, facilitate the regular monitoring of treatment/development of the patients case and can help train doctors with the new endoscopy technology. The accurate automatic classification is particularly important for the Intestinal Metaplasia (IM) type, which could turn into deadly cancerous. Hence, this work contributes to automatic classification that facilitates early intervention/treatment and decreasing biopsy samples needed.

Benefits of Red-Edge Spectral Band and Texture Features for the Object-based Classification using RapidEye sSatellite Image data

NASA Astrophysics Data System (ADS)

Kim, H. O.; Yeom, J. M.

2014-12-01

Space-based remote sensing in agriculture is particularly relevant to issues such as global climate change, food security, and precision agriculture. Recent satellite missions have opened up new perspectives by offering high spatial resolution, various spectral properties, and fast revisit rates to the same regions. Here, we examine the utility of broadband red-edge spectral information in multispectral satellite image data for classifying paddy rice crops in South Korea. Additionally, we examine how object-based spectral features affect the classification of paddy rice growth stages. For the analysis, two seasons of RapidEye satellite image data were used. The results showed that the broadband red-edge information slightly improved the classification accuracy of the crop condition in heterogeneous paddy rice crop environments, particularly when single-season image data were used. This positive effect appeared to be offset by the multi-temporal image data. Additional texture information brought only a minor improvement or a slight decline, although it is well known to be advantageous for object-based classification in general. We conclude that broadband red-edge information derived from conventional multispectral satellite data has the potential to improve space-based crop monitoring. Because the positive or negative effects of texture features for object-based crop classification could barely be interpreted, the relationships between the textual properties and paddy rice crop parameters at the field scale should be further examined in depth.

SELECTION OF BURST-LIKE TRANSIENTS AND STOCHASTIC VARIABLES USING MULTI-BAND IMAGE DIFFERENCING IN THE PAN-STARRS1 MEDIUM-DEEP SURVEY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kumar, S.; Gezari, S.; Heinis, S.

2015-03-20

We present a novel method for the light-curve characterization of Pan-STARRS1 Medium Deep Survey (PS1 MDS) extragalactic sources into stochastic variables (SVs) and burst-like (BL) transients, using multi-band image-differencing time-series data. We select detections in difference images associated with galaxy hosts using a star/galaxy catalog extracted from the deep PS1 MDS stacked images, and adopt a maximum a posteriori formulation to model their difference-flux time-series in four Pan-STARRS1 photometric bands g {sub P1}, r {sub P1}, i {sub P1}, and z {sub P1}. We use three deterministic light-curve models to fit BL transients; a Gaussian, a Gamma distribution, and anmore » analytic supernova (SN) model, and one stochastic light-curve model, the Ornstein-Uhlenbeck process, in order to fit variability that is characteristic of active galactic nuclei (AGNs). We assess the quality of fit of the models band-wise and source-wise, using their estimated leave-out-one cross-validation likelihoods and corrected Akaike information criteria. We then apply a K-means clustering algorithm on these statistics, to determine the source classification in each band. The final source classification is derived as a combination of the individual filter classifications, resulting in two measures of classification quality, from the averages across the photometric filters of (1) the classifications determined from the closest K-means cluster centers, and (2) the square distances from the clustering centers in the K-means clustering spaces. For a verification set of AGNs and SNe, we show that SV and BL occupy distinct regions in the plane constituted by these measures. We use our clustering method to characterize 4361 extragalactic image difference detected sources, in the first 2.5 yr of the PS1 MDS, into 1529 BL, and 2262 SV, with a purity of 95.00% for AGNs, and 90.97% for SN based on our verification sets. We combine our light-curve classifications with their nuclear or off-nuclear host galaxy offsets, to define a robust photometric sample of 1233 AGNs and 812 SNe. With these two samples, we characterize their variability and host galaxy properties, and identify simple photometric priors that would enable their real-time identification in future wide-field synoptic surveys.« less

Computer-aided Prognosis of Neuroblastoma on Whole-slide Images: Classification of Stromal Development

PubMed Central

Sertel, O.; Kong, J.; Shimada, H.; Catalyurek, U.V.; Saltz, J.H.; Gurcan, M.N.

2009-01-01

We are developing a computer-aided prognosis system for neuroblastoma (NB), a cancer of the nervous system and one of the most malignant tumors affecting children. Histopathological examination is an important stage for further treatment planning in routine clinical diagnosis of NB. According to the International Neuroblastoma Pathology Classification (the Shimada system), NB patients are classified into favorable and unfavorable histology based on the tissue morphology. In this study, we propose an image analysis system that operates on digitized H&E stained whole-slide NB tissue samples and classifies each slide as either stroma-rich or stroma-poor based on the degree of Schwannian stromal development. Our statistical framework performs the classification based on texture features extracted using co-occurrence statistics and local binary patterns. Due to the high resolution of digitized whole-slide images, we propose a multi-resolution approach that mimics the evaluation of a pathologist such that the image analysis starts from the lowest resolution and switches to higher resolutions when necessary. We employ an offine feature selection step, which determines the most discriminative features at each resolution level during the training step. A modified k-nearest neighbor classifier is used to determine the confidence level of the classification to make the decision at a particular resolution level. The proposed approach was independently tested on 43 whole-slide samples and provided an overall classification accuracy of 88.4%. PMID:20161324

Computer-aided Classification of Mammographic Masses Using Visually Sensitive Image Features

PubMed Central

Wang, Yunzhi; Aghaei, Faranak; Zarafshani, Ali; Qiu, Yuchen; Qian, Wei; Zheng, Bin

2017-01-01

Purpose To develop a new computer-aided diagnosis (CAD) scheme that computes visually sensitive image features routinely used by radiologists to develop a machine learning classifier and distinguish between the malignant and benign breast masses detected from digital mammograms. Methods An image dataset including 301 breast masses was retrospectively selected. From each segmented mass region, we computed image features that mimic five categories of visually sensitive features routinely used by radiologists in reading mammograms. We then selected five optimal features in the five feature categories and applied logistic regression models for classification. A new CAD interface was also designed to show lesion segmentation, computed feature values and classification score. Results Areas under ROC curves (AUC) were 0.786±0.026 and 0.758±0.027 when to classify mass regions depicting on two view images, respectively. By fusing classification scores computed from two regions, AUC increased to 0.806±0.025. Conclusion This study demonstrated a new approach to develop CAD scheme based on 5 visually sensitive image features. Combining with a “visual aid” interface, CAD results may be much more easily explainable to the observers and increase their confidence to consider CAD generated classification results than using other conventional CAD approaches, which involve many complicated and visually insensitive texture features. PMID:27911353

Tasked-based quantification of measurement utility for ex vivo multi-spectral Mueller polarimetry of the uterine cervix

NASA Astrophysics Data System (ADS)

Kupinski, Meredith; Rehbinder, Jean; Haddad, Huda; Deby, Stanislas; Vizet, Jérémy; Teig, Benjamin; Nazac, André; Pierangelo, Angelo; Moreau, François; Novikova, Tatiana

2017-07-01

Significant contrast in visible wavelength Mueller matrix images for healthy and pre-cancerous regions of excised cervical tissue is shown. A novel classification algorithm is used to compute a test statistic from a small patient population.

Local curvature analysis for classifying breast tumors: Preliminary analysis in dedicated breast CT

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, Juhun, E-mail: leej15@upmc.edu; Nishikawa, Robert M.; Reiser, Ingrid

2015-09-15

Purpose: The purpose of this study is to measure the effectiveness of local curvature measures as novel image features for classifying breast tumors. Methods: A total of 119 breast lesions from 104 noncontrast dedicated breast computed tomography images of women were used in this study. Volumetric segmentation was done using a seed-based segmentation algorithm and then a triangulated surface was extracted from the resulting segmentation. Total, mean, and Gaussian curvatures were then computed. Normalized curvatures were used as classification features. In addition, traditional image features were also extracted and a forward feature selection scheme was used to select the optimalmore » feature set. Logistic regression was used as a classifier and leave-one-out cross-validation was utilized to evaluate the classification performances of the features. The area under the receiver operating characteristic curve (AUC, area under curve) was used as a figure of merit. Results: Among curvature measures, the normalized total curvature (C{sub T}) showed the best classification performance (AUC of 0.74), while the others showed no classification power individually. Five traditional image features (two shape, two margin, and one texture descriptors) were selected via the feature selection scheme and its resulting classifier achieved an AUC of 0.83. Among those five features, the radial gradient index (RGI), which is a margin descriptor, showed the best classification performance (AUC of 0.73). A classifier combining RGI and C{sub T} yielded an AUC of 0.81, which showed similar performance (i.e., no statistically significant difference) to the classifier with the above five traditional image features. Additional comparisons in AUC values between classifiers using different combinations of traditional image features and C{sub T} were conducted. The results showed that C{sub T} was able to replace the other four image features for the classification task. Conclusions: The normalized curvature measure contains useful information in classifying breast tumors. Using this, one can reduce the number of features in a classifier, which may result in more robust classifiers for different datasets.« less

Optical perception for detection of cutaneous T-cell lymphoma by multi-spectral imaging

NASA Astrophysics Data System (ADS)

Hsiao, Yu-Ping; Wang, Hsiang-Chen; Chen, Shih-Hua; Tsai, Chung-Hung; Yang, Jen-Hung

2014-12-01

In this study, the spectrum of each picture element of the patient’s skin image was obtained by multi-spectral imaging technology. Spectra of normal or pathological skin were collected from 15 patients. Principal component analysis and principal component scores of skin spectra were employed to distinguish the spectral characteristics with different diseases. Finally, skin regions with suspected cutaneous T-cell lymphoma (CTCL) lesions were successfully predicted by evaluation and classification of the spectra of pathological skin. The sensitivity and specificity of this technique were 89.65% and 95.18% after the analysis of about 109 patients. The probability of atopic dermatitis and psoriasis patients misinterpreted as CTCL were 5.56% and 4.54%, respectively.

Combined multi-kernel head computed tomography images optimized for depicting both brain parenchyma and bone.

PubMed

Takagi, Satoshi; Nagase, Hiroyuki; Hayashi, Tatsuya; Kita, Tamotsu; Hayashi, Katsumi; Sanada, Shigeru; Koike, Masayuki

2014-01-01

The hybrid convolution kernel technique for computed tomography (CT) is known to enable the depiction of an image set using different window settings. Our purpose was to decrease the number of artifacts in the hybrid convolution kernel technique for head CT and to determine whether our improved combined multi-kernel head CT images enabled diagnosis as a substitute for both brain (low-pass kernel-reconstructed) and bone (high-pass kernel-reconstructed) images. Forty-four patients with nondisplaced skull fractures were included. Our improved multi-kernel images were generated so that pixels of >100 Hounsfield unit in both brain and bone images were composed of CT values of bone images and other pixels were composed of CT values of brain images. Three radiologists compared the improved multi-kernel images with bone images. The improved multi-kernel images and brain images were identically displayed on the brain window settings. All three radiologists agreed that the improved multi-kernel images on the bone window settings were sufficient for diagnosing skull fractures in all patients. This improved multi-kernel technique has a simple algorithm and is practical for clinical use. Thus, simplified head CT examinations and fewer images that need to be stored can be expected.

Multi-fractal detrended texture feature for brain tumor classification

NASA Astrophysics Data System (ADS)

Reza, Syed M. S.; Mays, Randall; Iftekharuddin, Khan M.

2015-03-01

We propose a novel non-invasive brain tumor type classification using Multi-fractal Detrended Fluctuation Analysis (MFDFA) [1] in structural magnetic resonance (MR) images. This preliminary work investigates the efficacy of the MFDFA features along with our novel texture feature known as multifractional Brownian motion (mBm) [2] in classifying (grading) brain tumors as High Grade (HG) and Low Grade (LG). Based on prior performance, Random Forest (RF) [3] is employed for tumor grading using two different datasets such as BRATS-2013 [4] and BRATS-2014 [5]. Quantitative scores such as precision, recall, accuracy are obtained using the confusion matrix. On an average 90% precision and 85% recall from the inter-dataset cross-validation confirm the efficacy of the proposed method.

Vehicle Classification Using an Imbalanced Dataset Based on a Single Magnetic Sensor.

PubMed

Xu, Chang; Wang, Yingguan; Bao, Xinghe; Li, Fengrong

2018-05-24

This paper aims to improve the accuracy of automatic vehicle classifiers for imbalanced datasets. Classification is made through utilizing a single anisotropic magnetoresistive sensor, with the models of vehicles involved being classified into hatchbacks, sedans, buses, and multi-purpose vehicles (MPVs). Using time domain and frequency domain features in combination with three common classification algorithms in pattern recognition, we develop a novel feature extraction method for vehicle classification. These three common classification algorithms are the k-nearest neighbor, the support vector machine, and the back-propagation neural network. Nevertheless, a problem remains with the original vehicle magnetic dataset collected being imbalanced, and may lead to inaccurate classification results. With this in mind, we propose an approach called SMOTE, which can further boost the performance of classifiers. Experimental results show that the k-nearest neighbor (KNN) classifier with the SMOTE algorithm can reach a classification accuracy of 95.46%, thus minimizing the effect of the imbalance.

Programmers and Dissolve Controls for Multi-Image Presentations.

ERIC Educational Resources Information Center

Benedict, Joel A.; Fuller, Barry J.

For audiovisual personnel planning multi-image presentations, a programer is suggested and its purpose and functions explained. Digital, frequency and punched-taped programers are defined and discussed, and approximate costs given. Methods of operating are described, and the possible tie-in of a dissolve unit is discussed. Equipment hookups are…

Evaluation of AMOEBA: a spectral-spatial classification method

USGS Publications Warehouse

Jenson, Susan K.; Loveland, Thomas R.; Bryant, J.

1982-01-01

Muitispectral remotely sensed images have been treated as arbitrary multivariate spectral data for purposes of clustering and classifying. However, the spatial properties of image data can also be exploited. AMOEBA is a clustering and classification method that is based on a spatially derived model for image data. In an evaluation test, Landsat data were classified with both AMOEBA and a widely used spectral classifier. The test showed that irrigated crop types can be classified as accurately with the AMOEBA method as with the generally used spectral method ISOCLS; the AMOEBA method, however, requires less computer time.

Large-Scale Machine Learning for Classification and Search

ERIC Educational Resources Information Center

Liu, Wei

2012-01-01

With the rapid development of the Internet, nowadays tremendous amounts of data including images and videos, up to millions or billions, can be collected for training machine learning models. Inspired by this trend, this thesis is dedicated to developing large-scale machine learning techniques for the purpose of making classification and nearest…

A method for automatic grain segmentation of multi-angle cross-polarized microscopic images of sandstone

NASA Astrophysics Data System (ADS)

Jiang, Feng; Gu, Qing; Hao, Huizhen; Li, Na; Wang, Bingqian; Hu, Xiumian

2018-06-01

Automatic grain segmentation of sandstone is to partition mineral grains into separate regions in the thin section, which is the first step for computer aided mineral identification and sandstone classification. The sandstone microscopic images contain a large number of mixed mineral grains where differences among adjacent grains, i.e., quartz, feldspar and lithic grains, are usually ambiguous, which make grain segmentation difficult. In this paper, we take advantage of multi-angle cross-polarized microscopic images and propose a method for grain segmentation with high accuracy. The method consists of two stages, in the first stage, we enhance the SLIC (Simple Linear Iterative Clustering) algorithm, named MSLIC, to make use of multi-angle images and segment the images as boundary adherent superpixels. In the second stage, we propose the region merging technique which combines the coarse merging and fine merging algorithms. The coarse merging merges the adjacent superpixels with less evident boundaries, and the fine merging merges the ambiguous superpixels using the spatial enhanced fuzzy clustering. Experiments are designed on 9 sets of multi-angle cross-polarized images taken from the three major types of sandstones. The results demonstrate both the effectiveness and potential of the proposed method, comparing to the available segmentation methods.

Evaluation of different distortion correction methods and interpolation techniques for an automated classification of celiac disease☆

PubMed Central

Gadermayr, M.; Liedlgruber, M.; Uhl, A.; Vécsei, A.

2013-01-01

Due to the optics used in endoscopes, a typical degradation observed in endoscopic images are barrel-type distortions. In this work we investigate the impact of methods used to correct such distortions in images on the classification accuracy in the context of automated celiac disease classification. For this purpose we compare various different distortion correction methods and apply them to endoscopic images, which are subsequently classified. Since the interpolation used in such methods is also assumed to have an influence on the resulting classification accuracies, we also investigate different interpolation methods and their impact on the classification performance. In order to be able to make solid statements about the benefit of distortion correction we use various different feature extraction methods used to obtain features for the classification. Our experiments show that it is not possible to make a clear statement about the usefulness of distortion correction methods in the context of an automated diagnosis of celiac disease. This is mainly due to the fact that an eventual benefit of distortion correction highly depends on the feature extraction method used for the classification. PMID:23981585

Optical Turbulence on Underwater Image Degradation in Natural Environments

DTIC Science & Technology

2013-05-31

A. Laux, B. M. Concannon, E. P . Zege, I. L. Katsev, and A. S. Prikhach, "Amplitude-modulated Laser Imager," Appl. Opt. 43, 3874- 3892 (2004). 6. G...Security Symposium, R. A. W. Hou, ed. (SPIE, Orlando, FL, 2011), p . 8. 17 24 . A. Kanaev, W. Hou, and S. Woods, "Multi-frame Underwater Image...report ) Journal article (not refereed) Route Sheet No. !~3_!)!_ Job Order No. __ 73_:§~§.~~ 0_1- 5 Classification X u c Sponsor ONR ( ) Oral

MUSIC imaging method for electromagnetic inspection of composite multi-layers

NASA Astrophysics Data System (ADS)

Rodeghiero, Giacomo; Ding, Ping-Ping; Zhong, Yu; Lambert, Marc; Lesselier, Dominique

2015-03-01

A first-order asymptotic formulation of the electric field scattered by a small inclusion (with respect to the wavelength in dielectric regime or to the skin depth in conductive regime) embedded in composite material is given. It is validated by comparison with results obtained using a Method of Moments (MoM). A non-iterative MUltiple SIgnal Classification (MUSIC) imaging method is utilized in the same configuration to locate the position of small defects. The effectiveness of the imaging algorithm is illustrated through some numerical examples.

Remote Sensing Classification of Grass Seed Cropping Practices in Western Oregon

USDA-ARS?s Scientific Manuscript database

Multiband Landsat images and multi-temporal MODIS 16-day composite NDVI were classified into 16 categories representing the primary crop rotation options and stand establishment conditions present in western Oregon grass seed fields. Mismatch in resolution between MODIS and Landsat data was resolved...

Improved biliary detection and diagnosis through intelligent machine analysis.

PubMed

Logeswaran, Rajasvaran

2012-09-01

This paper reports on work undertaken to improve automated detection of bile ducts in magnetic resonance cholangiopancreatography (MRCP) images, with the objective of conducting preliminary classification of the images for diagnosis. The proposed I-BDeDIMA (Improved Biliary Detection and Diagnosis through Intelligent Machine Analysis) scheme is a multi-stage framework consisting of successive phases of image normalization, denoising, structure identification, object labeling, feature selection and disease classification. A combination of multiresolution wavelet, dynamic intensity thresholding, segment-based region growing, region elimination, statistical analysis and neural networks, is used in this framework to achieve good structure detection and preliminary diagnosis. Tests conducted on over 200 clinical images with known diagnosis have shown promising results of over 90% accuracy. The scheme outperforms related work in the literature, making it a viable framework for computer-aided diagnosis of biliary diseases. Copyright © 2010 Elsevier Ireland Ltd. All rights reserved.

Deep learning for brain tumor classification

NASA Astrophysics Data System (ADS)

Paul, Justin S.; Plassard, Andrew J.; Landman, Bennett A.; Fabbri, Daniel

2017-03-01

Recent research has shown that deep learning methods have performed well on supervised machine learning, image classification tasks. The purpose of this study is to apply deep learning methods to classify brain images with different tumor types: meningioma, glioma, and pituitary. A dataset was publicly released containing 3,064 T1-weighted contrast enhanced MRI (CE-MRI) brain images from 233 patients with either meningioma, glioma, or pituitary tumors split across axial, coronal, or sagittal planes. This research focuses on the 989 axial images from 191 patients in order to avoid confusing the neural networks with three different planes containing the same diagnosis. Two types of neural networks were used in classification: fully connected and convolutional neural networks. Within these two categories, further tests were computed via the augmentation of the original 512×512 axial images. Training neural networks over the axial data has proven to be accurate in its classifications with an average five-fold cross validation of 91.43% on the best trained neural network. This result demonstrates that a more general method (i.e. deep learning) can outperform specialized methods that require image dilation and ring-forming subregions on tumors.

D Land Cover Classification Based on Multispectral LIDAR Point Clouds

NASA Astrophysics Data System (ADS)

Zou, Xiaoliang; Zhao, Guihua; Li, Jonathan; Yang, Yuanxi; Fang, Yong

2016-06-01

Multispectral Lidar System can emit simultaneous laser pulses at the different wavelengths. The reflected multispectral energy is captured through a receiver of the sensor, and the return signal together with the position and orientation information of sensor is recorded. These recorded data are solved with GNSS/IMU data for further post-processing, forming high density multispectral 3D point clouds. As the first commercial multispectral airborne Lidar sensor, Optech Titan system is capable of collecting point clouds data from all three channels at 532nm visible (Green), at 1064 nm near infrared (NIR) and at 1550nm intermediate infrared (IR). It has become a new source of data for 3D land cover classification. The paper presents an Object Based Image Analysis (OBIA) approach to only use multispectral Lidar point clouds datasets for 3D land cover classification. The approach consists of three steps. Firstly, multispectral intensity images are segmented into image objects on the basis of multi-resolution segmentation integrating different scale parameters. Secondly, intensity objects are classified into nine categories by using the customized features of classification indexes and a combination the multispectral reflectance with the vertical distribution of object features. Finally, accuracy assessment is conducted via comparing random reference samples points from google imagery tiles with the classification results. The classification results show higher overall accuracy for most of the land cover types. Over 90% of overall accuracy is achieved via using multispectral Lidar point clouds for 3D land cover classification.

Automatic morphological classification of galaxy images

PubMed Central

Shamir, Lior

2009-01-01

We describe an image analysis supervised learning algorithm that can automatically classify galaxy images. The algorithm is first trained using a manually classified images of elliptical, spiral, and edge-on galaxies. A large set of image features is extracted from each image, and the most informative features are selected using Fisher scores. Test images can then be classified using a simple Weighted Nearest Neighbor rule such that the Fisher scores are used as the feature weights. Experimental results show that galaxy images from Galaxy Zoo can be classified automatically to spiral, elliptical and edge-on galaxies with accuracy of ~90% compared to classifications carried out by the author. Full compilable source code of the algorithm is available for free download, and its general-purpose nature makes it suitable for other uses that involve automatic image analysis of celestial objects. PMID:20161594

Rabi cropped area forecasting of parts of Banaskatha District,Gujarat using MRS RISAT-1 SAR data

NASA Astrophysics Data System (ADS)

Parekh, R. A.; Mehta, R. L.; Vyas, A.

2016-10-01

Radar sensors can be used for large-scale vegetation mapping and monitoring using backscatter coefficients in different polarisations and wavelength bands. Due to cloud and haze interference, optical images are not always available at all phonological stages important for crop discrimination. Moreover, in cloud prone areas, exclusively SAR approach would provide operational solution. This paper presents the results of classifying the cropped and non cropped areas using multi-temporal SAR images. Dual polarised C- band RISAT MRS (Medium Resolution ScanSAR mode) data were acquired on 9thDec. 2012, 28thJan. 2013 and 22nd Feb. 2013 at 18m spatial resolution. Intensity images of two polarisations (HH, HV) were extracted and converted into backscattering coefficient images. Cross polarisation ratio (CPR) images and Radar fractional vegetation density index (RFDI) were created from the temporal data and integrated with the multi-temporal images. Signatures of cropped and un-cropped areas were used for maximum likelihood supervised classification. Separability in cropped and umcropped classes using different polarisation combinations and classification accuracy analysis was carried out. FCC (False Color Composite) prepared using best three SAR polarisations in the data set was compared with LISS-III (Linear Imaging Self-Scanning System-III) image. The acreage under rabi crops was estimated. The methodology developed was for rabi cropped area, due to availability of SAR data of rabi season. Though, the approach is more relevant for acreage estimation of kharif crops when frequent cloud cover condition prevails during monsoon season and optical sensors fail to deliver good quality images.

Modeling Habitat Suitability of Migratory Birds from Remote Sensing Images Using Convolutional Neural Networks

PubMed Central

Su, Jin-He; Piao, Ying-Chao; Luo, Ze; Yan, Bao-Ping

2018-01-01

Simple Summary The understanding of the spatio-temporal distribution of the species habitats would facilitate wildlife resource management and conservation efforts. Existing methods have poor performance due to the limited availability of training samples. More recently, location-aware sensors have been widely used to track animal movements. The aim of the study was to generate suitability maps of bar-head geese using movement data coupled with environmental parameters, such as remote sensing images and temperature data. Therefore, we modified a deep convolutional neural network for the multi-scale inputs. The results indicate that the proposed method can identify the areas with the dense goose species around Qinghai Lake. In addition, this approach might also be interesting for implementation in other species with different niche factors or in areas where biological survey data are scarce. Abstract With the application of various data acquisition devices, a large number of animal movement data can be used to label presence data in remote sensing images and predict species distribution. In this paper, a two-stage classification approach for combining movement data and moderate-resolution remote sensing images was proposed. First, we introduced a new density-based clustering method to identify stopovers from migratory birds’ movement data and generated classification samples based on the clustering result. We split the remote sensing images into 16 × 16 patches and labeled them as positive samples if they have overlap with stopovers. Second, a multi-convolution neural network model is proposed for extracting the features from temperature data and remote sensing images, respectively. Then a Support Vector Machines (SVM) model was used to combine the features together and predict classification results eventually. The experimental analysis was carried out on public Landsat 5 TM images and a GPS dataset was collected on 29 birds over three years. The results indicated that our proposed method outperforms the existing baseline methods and was able to achieve good performance in habitat suitability prediction. PMID:29701686

Efficient Multi-Concept Visual Classifier Adaptation in Changing Environments

DTIC Science & Technology

2016-09-01

yet to be discussed in existing supervised multi-concept visual perception systems used in robotics applications.1,5–7 Anno - tation of images is...Autonomous robot navigation in highly populated pedestrian zones. J Field Robotics. 2015;32(4):565–589. 3. Milella A, Reina G, Underwood J . A self...learning framework for statistical ground classification using RADAR and monocular vision. J Field Robotics. 2015;32(1):20–41. 4. Manjanna S, Dudek G

Decision Tree Repository and Rule Set Based Mingjiang River Estuarine Wetlands Classifaction

NASA Astrophysics Data System (ADS)

Zhang, W.; Li, X.; Xiao, W.

2018-05-01

The increasing urbanization and industrialization have led to wetland losses in estuarine area of Mingjiang River over past three decades. There has been increasing attention given to produce wetland inventories using remote sensing and GIS technology. Due to inconsistency training site and training sample, traditionally pixel-based image classification methods can't achieve a comparable result within different organizations. Meanwhile, object-oriented image classification technique shows grate potential to solve this problem and Landsat moderate resolution remote sensing images are widely used to fulfill this requirement. Firstly, the standardized atmospheric correct, spectrally high fidelity texture feature enhancement was conducted before implementing the object-oriented wetland classification method in eCognition. Secondly, we performed the multi-scale segmentation procedure, taking the scale, hue, shape, compactness and smoothness of the image into account to get the appropriate parameters, using the top and down region merge algorithm from single pixel level, the optimal texture segmentation scale for different types of features is confirmed. Then, the segmented object is used as the classification unit to calculate the spectral information such as Mean value, Maximum value, Minimum value, Brightness value and the Normalized value. The Area, length, Tightness and the Shape rule of the image object Spatial features and texture features such as Mean, Variance and Entropy of image objects are used as classification features of training samples. Based on the reference images and the sampling points of on-the-spot investigation, typical training samples are selected uniformly and randomly for each type of ground objects. The spectral, texture and spatial characteristics of each type of feature in each feature layer corresponding to the range of values are used to create the decision tree repository. Finally, with the help of high resolution reference images, the random sampling method is used to conduct the field investigation, achieve an overall accuracy of 90.31 %, and the Kappa coefficient is 0.88. The classification method based on decision tree threshold values and rule set developed by the repository, outperforms the results obtained from the traditional methodology. Our decision tree repository and rule set based object-oriented classification technique was an effective method for producing comparable and consistency wetlands data set.

Gates to Gregg High Voltage Transmission Line Study. [California

NASA Technical Reports Server (NTRS)

Bergis, V.; Maw, K.; Newland, W.; Sinnott, D.; Thornbury, G.; Easterwood, P.; Bonderud, J.

1982-01-01

The usefulness of LANDSAT data in the planning of transmission line routes was assessed. LANDSAT digital data and image processing techniques, specifically a multi-date supervised classification aproach, were used to develop a land cover map for an agricultural area near Fresno, California. Twenty-six land cover classes were identified, of which twenty classes were agricultural crops. High classification accuracies (greater than 80%) were attained for several classes, including cotton, grain, and vineyards. The primary products generated were 1:24,000, 1:100,000 and 1:250,000 scale maps of the classification and acreage summaries for all land cover classes within four alternate transmission line routes.

Single-trial EEG RSVP classification using convolutional neural networks

NASA Astrophysics Data System (ADS)

Shamwell, Jared; Lee, Hyungtae; Kwon, Heesung; Marathe, Amar R.; Lawhern, Vernon; Nothwang, William

2016-05-01

Traditionally, Brain-Computer Interfaces (BCI) have been explored as a means to return function to paralyzed or otherwise debilitated individuals. An emerging use for BCIs is in human-autonomy sensor fusion where physiological data from healthy subjects is combined with machine-generated information to enhance the capabilities of artificial systems. While human-autonomy fusion of physiological data and computer vision have been shown to improve classification during visual search tasks, to date these approaches have relied on separately trained classification models for each modality. We aim to improve human-autonomy classification performance by developing a single framework that builds codependent models of human electroencephalograph (EEG) and image data to generate fused target estimates. As a first step, we developed a novel convolutional neural network (CNN) architecture and applied it to EEG recordings of subjects classifying target and non-target image presentations during a rapid serial visual presentation (RSVP) image triage task. The low signal-to-noise ratio (SNR) of EEG inherently limits the accuracy of single-trial classification and when combined with the high dimensionality of EEG recordings, extremely large training sets are needed to prevent overfitting and achieve accurate classification from raw EEG data. This paper explores a new deep CNN architecture for generalized multi-class, single-trial EEG classification across subjects. We compare classification performance from the generalized CNN architecture trained across all subjects to the individualized XDAWN, HDCA, and CSP neural classifiers which are trained and tested on single subjects. Preliminary results show that our CNN meets and slightly exceeds the performance of the other classifiers despite being trained across subjects.

Texture analysis applied to second harmonic generation image data for disease classification and development of a multi-view second harmonic generation imaging platform

NASA Astrophysics Data System (ADS)

Wen, Lianggong

Many diseases, e.g. ovarian cancer, breast cancer and pulmonary fibrosis, are commonly associated with drastic alterations in surrounding connective tissue, and changes in the extracellular matrix (ECM) are associated with the vast majority of cellular processes in disease progression and carcinogenesis: cell differentiation, proliferation, biosynthetic ability, polarity, and motility. We use second harmonic generation (SHG) microscopy for imaging the ECM because it is a non-invasive, non-linear laser scanning technique with high sensitivity and specificity for visualizing fibrillar collagen. In this thesis, we are interested in developing imaging techniques to understand how the ECM, especially the collagen architecture, is remodeled in diseases. To quantitate remodeling, we implement a 3D texture analysis to delineate the collagen fibrillar morphology observed in SHG microscopy images of human normal and high grade malignant ovarian tissues. In the learning stage, a dictionary of "textons"---frequently occurring texture features that are identified by measuring the image response to a filter bank of various shapes, sizes, and orientations---is created. By calculating a representative model based on the texton distribution for each tissue type using a training set of respective mages, we then perform classification between normal and high grade malignant ovarian tissues classification based on the area under receiver operating characteristic curves (true positives versus false positives). The local analysis algorithm is a more general method to probe rapidly changing fibrillar morphologies than global analyses such as FFT. It is also more versatile than other texture approaches as the filter bank can be highly tailored to specific applications (e.g., different disease states) by creating customized libraries based on common image features. Further, we describe the development of a multi-view 3D SHG imaging platform. Unlike fluorescence microscopy, SHG excites intrinsic characteristics of collagen, bypassing the need for additional primary and secondary imaging labels. However, single view image collection from endogenous SHG contrast of collagen molecules is not "a true 3D technique", because collagen fibers oriented along the plane of the lasers used to excite them are invisible to the excitation The loss of information means that researchers cannot resolve the 3D structure of the ECM using this technique. We are developing a new, multi-view approach that involves rotation of agarose embedded sample in FEP tubing, so that the excitation beam path travels to from multiple angles, to reveal new insight in understanding the 3D collagen structure and its role in normal and diseased tissue.

MAC Europe 1991 campaign: AIRSAR/AVIRIS data integration for agricultural test site classification

NASA Technical Reports Server (NTRS)

Sangiovanni, S.; Buongiorno, M. F.; Ferrarini, M.; Fiumara, A.

1993-01-01

During summer 1991, multi-sensor data were acquired over the Italian test site 'Otrepo Pavese', an agricultural flat area in Northern Italy. This area has been the Telespazio pilot test site for experimental activities related to agriculture applications. The aim of the investigation described in the following paper is to assess the amount of information contained in the AIRSAR (Airborne Synthetic Aperture Radar) and AVIRIS (Airborne Visible/Infrared Imaging Spectrometer) data, and to evaluate classification results obtained from each sensor data separately and from the combined dataset. All classifications are examined by means of the resulting confusion matrices and Khat coefficients. Improvements of the classification results obtained by using the integrated dataset are finally evaluated.

Vegetation Monitoring of Mashhad Using AN Object-Oriented POST Classification Comparison Method

NASA Astrophysics Data System (ADS)

Khalili Moghadam, N.; Delavar, M. R.; Forati, A.

2017-09-01

By and large, todays mega cities are confronting considerable urban development in which many new buildings are being constructed in fringe areas of these cities. This remarkable urban development will probably end in vegetation reduction even though each mega city requires adequate areas of vegetation, which is considered to be crucial and helpful for these cities from a wide variety of perspectives such as air pollution reduction, soil erosion prevention, and eco system as well as environmental protection. One of the optimum methods for monitoring this vital component of each city is multi-temporal satellite images acquisition and using change detection techniques. In this research, the vegetation and urban changes of Mashhad, Iran, were monitored using an object-oriented (marker-based watershed algorithm) post classification comparison (PCC) method. A Bi-temporal multi-spectral Landsat satellite image was used from the study area to detect the changes of urban and vegetation areas and to find a relation between these changes. The results of this research demonstrate that during 1987-2017, Mashhad urban area has increased about 22525 hectares and the vegetation area has decreased approximately 4903 hectares. These statistics substantiate the close relationship between urban development and vegetation reduction. Moreover, the overall accuracies of 85.5% and 91.2% were achieved for the first and the second image classification, respectively. In addition, the overall accuracy and kappa coefficient of change detection were assessed 84.1% and 70.3%, respectively.

Implementation and evaluation of ILLIAC 4 algorithms for multispectral image processing

NASA Technical Reports Server (NTRS)

Swain, P. H.

1974-01-01

Data concerning a multidisciplinary and multi-organizational effort to implement multispectral data analysis algorithms on a revolutionary computer, the Illiac 4, are reported. The effectiveness and efficiency of implementing the digital multispectral data analysis techniques for producing useful land use classifications from satellite collected data were demonstrated.

Multi-Class Classification for Identifying JPEG Steganography Embedding Methods

DTIC Science & Technology

2008-09-01

B.H. (2000). STEGANOGRAPHY: Hidden Images, A New Challenge in the Fight Against Child Porn . UPDATE, Volume 13, Number 2, pp. 1-4, Retrieved June 3...Other crimes involving the use of steganography include child pornography where the stego files are used to hide a predator’s location when posting

A domain-knowledge-inspired mathematical framework for the description and classification of H&E stained histopathology images.

PubMed

Massar, Melody L; Bhagavatula, Ramamurthy; Ozolek, John A; Castro, Carlos A; Fickus, Matthew; Kovačević, Jelena

2011-10-19

We present the current state of our work on a mathematical framework for identification and delineation of histopathology images-local histograms and occlusion models. Local histograms are histograms computed over defined spatial neighborhoods whose purpose is to characterize an image locally. This unit of description is augmented by our occlusion models that describe a methodology for image formation. In the context of this image formation model, the power of local histograms with respect to appropriate families of images will be shown through various proved statements about expected performance. We conclude by presenting a preliminary study to demonstrate the power of the framework in the context of histopathology image classification tasks that, while differing greatly in application, both originate from what is considered an appropriate class of images for this framework.

Phylogenetic convolutional neural networks in metagenomics.

PubMed

Fioravanti, Diego; Giarratano, Ylenia; Maggio, Valerio; Agostinelli, Claudio; Chierici, Marco; Jurman, Giuseppe; Furlanello, Cesare

2018-03-08

Convolutional Neural Networks can be effectively used only when data are endowed with an intrinsic concept of neighbourhood in the input space, as is the case of pixels in images. We introduce here Ph-CNN, a novel deep learning architecture for the classification of metagenomics data based on the Convolutional Neural Networks, with the patristic distance defined on the phylogenetic tree being used as the proximity measure. The patristic distance between variables is used together with a sparsified version of MultiDimensional Scaling to embed the phylogenetic tree in a Euclidean space. Ph-CNN is tested with a domain adaptation approach on synthetic data and on a metagenomics collection of gut microbiota of 38 healthy subjects and 222 Inflammatory Bowel Disease patients, divided in 6 subclasses. Classification performance is promising when compared to classical algorithms like Support Vector Machines and Random Forest and a baseline fully connected neural network, e.g. the Multi-Layer Perceptron. Ph-CNN represents a novel deep learning approach for the classification of metagenomics data. Operatively, the algorithm has been implemented as a custom Keras layer taking care of passing to the following convolutional layer not only the data but also the ranked list of neighbourhood of each sample, thus mimicking the case of image data, transparently to the user.

Complex extreme learning machine applications in terahertz pulsed signals feature sets.

PubMed

Yin, X-X; Hadjiloucas, S; Zhang, Y

2014-11-01

This paper presents a novel approach to the automatic classification of very large data sets composed of terahertz pulse transient signals, highlighting their potential use in biochemical, biomedical, pharmaceutical and security applications. Two different types of THz spectra are considered in the classification process. Firstly a binary classification study of poly-A and poly-C ribonucleic acid samples is performed. This is then contrasted with a difficult multi-class classification problem of spectra from six different powder samples that although have fairly indistinguishable features in the optical spectrum, they also possess a few discernable spectral features in the terahertz part of the spectrum. Classification is performed using a complex-valued extreme learning machine algorithm that takes into account features in both the amplitude as well as the phase of the recorded spectra. Classification speed and accuracy are contrasted with that achieved using a support vector machine classifier. The study systematically compares the classifier performance achieved after adopting different Gaussian kernels when separating amplitude and phase signatures. The two signatures are presented as feature vectors for both training and testing purposes. The study confirms the utility of complex-valued extreme learning machine algorithms for classification of the very large data sets generated with current terahertz imaging spectrometers. The classifier can take into consideration heterogeneous layers within an object as would be required within a tomographic setting and is sufficiently robust to detect patterns hidden inside noisy terahertz data sets. The proposed study opens up the opportunity for the establishment of complex-valued extreme learning machine algorithms as new chemometric tools that will assist the wider proliferation of terahertz sensing technology for chemical sensing, quality control, security screening and clinic diagnosis. Furthermore, the proposed algorithm should also be very useful in other applications requiring the classification of very large datasets. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

Automated pathologies detection in retina digital images based on complex continuous wavelet transform phase angles.

PubMed

Lahmiri, Salim; Gargour, Christian S; Gabrea, Marcel

2014-10-01

An automated diagnosis system that uses complex continuous wavelet transform (CWT) to process retina digital images and support vector machines (SVMs) for classification purposes is presented. In particular, each retina image is transformed into two one-dimensional signals by concatenating image rows and columns separately. The mathematical norm of phase angles found in each one-dimensional signal at each level of CWT decomposition are relied on to characterise the texture of normal images against abnormal images affected by exudates, drusen and microaneurysms. The leave-one-out cross-validation method was adopted to conduct experiments and the results from the SVM show that the proposed approach gives better results than those obtained by other methods based on the correct classification rate, sensitivity and specificity.

Segmentation of bone and soft tissue regions in digital radiographic images of extremities

NASA Astrophysics Data System (ADS)

Pakin, S. Kubilay; Gaborski, Roger S.; Barski, Lori L.; Foos, David H.; Parker, Kevin J.

2001-07-01

This paper presents an algorithm for segmentation of computed radiography (CR) images of extremities into bone and soft tissue regions. The algorithm is a region-based one in which the regions are constructed using a growing procedure with two different statistical tests. Following the growing process, tissue classification procedure is employed. The purpose of the classification is to label each region as either bone or soft tissue. This binary classification goal is achieved by using a voting procedure that consists of clustering of regions in each neighborhood system into two classes. The voting procedure provides a crucial compromise between local and global analysis of the image, which is necessary due to strong exposure variations seen on the imaging plate. Also, the existence of regions whose size is large enough such that exposure variations can be observed through them makes it necessary to use overlapping blocks during the classification. After the classification step, resulting bone and soft tissue regions are refined by fitting a 2nd order surface to each tissue, and reevaluating the label of each region according to the distance between the region and surfaces. The performance of the algorithm is tested on a variety of extremity images using manually segmented images as gold standard. The experiments showed that our algorithm provided a bone boundary with an average area overlap of 90% compared to the gold standard.

SU-E-J-47: Development of a High-Precision, Image-Guided Radiotherapy, Multi- Purpose Radiation Isocenter Quality-Assurance Calibration and Checking System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, C; Yan, G; Helmig, R

2014-06-01

Purpose: To develop a system that can define the radiation isocenter and correlate this information with couch coordinates, laser alignment, optical distance indicator (ODI) settings, optical tracking system (OTS) calibrations, and mechanical isocenter walkout. Methods: Our team developed a multi-adapter, multi-purpose quality assurance (QA) and calibration device that uses an electronic portal imaging device (EPID) and in-house image-processing software to define the radiation isocenter, thereby allowing linear accelerator (Linac) components to be verified and calibrated. Motivated by the concept that each Linac component related to patient setup for image-guided radiotherapy based on cone-beam CT should be calibrated with respect tomore » the radiation isocenter, we designed multiple concentric adapters of various materials and shapes to meet the needs of MV and KV radiation isocenter definition, laser alignment, and OTS calibration. The phantom's ability to accurately define the radiation isocenter was validated on 4 Elekta Linacs using a commercial ball bearing (BB) phantom as a reference. Radiation isocenter walkout and the accuracy of couch coordinates, ODI, and OTS were then quantified with the device. Results: The device was able to define the radiation isocenter within 0.3 mm. Radiation isocenter walkout was within ±1 mm at 4 cardinal angles. By switching adapters, we identified that the accuracy of the couch position digital readout, ODI, OTS, and mechanical isocenter walkout was within sub-mm. Conclusion: This multi-adapter, multi-purpose isocenter phantom can be used to accurately define the radiation isocenter and represents a potential paradigm shift in Linac QA. Moreover, multiple concentric adapters allowed for sub-mm accuracy for the other relevant components. This intuitive and user-friendly design is currently patent pending.« less

Contribution of the new satellites (Sentinel-1, Sentinel-2 and SPOT-6) to the coastal vegetation monitoring in the Pays de Brest (France)

NASA Astrophysics Data System (ADS)

Talab-Ou-Ali, Halima; Niculescu, Simona; Sellin, Vanessa; Bougault, Christophe

2017-10-01

This paper presents a methodology for monitoring vegetation in the Pays de Brest using new series of Sentinel-1 satellite images combining with Sentinel-2 and SPOT-6. This work consists of establishing an interferogram method of the main types of vegetation in order to achieve the coherence of a multi-temporal Sentinel-1 radar image series, in SLC format (C band, VV and VH polarization), between 2015 and 2016. We then proceed to calculating the radar backscatter coefficient based on Sentinel 1 images in GRD format. Multi-date and multipolarized color compositions will be made to detect changes. It also shows the importance of data synergy to obtain an excellent accuracy using Random Forest classification.

Abnormality detection of mammograms by discriminative dictionary learning on DSIFT descriptors.

PubMed

Tavakoli, Nasrin; Karimi, Maryam; Nejati, Mansour; Karimi, Nader; Reza Soroushmehr, S M; Samavi, Shadrokh; Najarian, Kayvan

2017-07-01

Detection and classification of breast lesions using mammographic images are one of the most difficult studies in medical image processing. A number of learning and non-learning methods have been proposed for detecting and classifying these lesions. However, the accuracy of the detection/classification still needs improvement. In this paper we propose a powerful classification method based on sparse learning to diagnose breast cancer in mammograms. For this purpose, a supervised discriminative dictionary learning approach is applied on dense scale invariant feature transform (DSIFT) features. A linear classifier is also simultaneously learned with the dictionary which can effectively classify the sparse representations. Our experimental results show the superior performance of our method compared to existing approaches.

Gender classification from face images by using local binary pattern and gray-level co-occurrence matrix

NASA Astrophysics Data System (ADS)

Uzbaş, Betül; Arslan, Ahmet

2018-04-01

Gender is an important step for human computer interactive processes and identification. Human face image is one of the important sources to determine gender. In the present study, gender classification is performed automatically from facial images. In order to classify gender, we propose a combination of features that have been extracted face, eye and lip regions by using a hybrid method of Local Binary Pattern and Gray-Level Co-Occurrence Matrix. The features have been extracted from automatically obtained face, eye and lip regions. All of the extracted features have been combined and given as input parameters to classification methods (Support Vector Machine, Artificial Neural Networks, Naive Bayes and k-Nearest Neighbor methods) for gender classification. The Nottingham Scan face database that consists of the frontal face images of 100 people (50 male and 50 female) is used for this purpose. As the result of the experimental studies, the highest success rate has been achieved as 98% by using Support Vector Machine. The experimental results illustrate the efficacy of our proposed method.

Early Validation of Sentinel-2 L2A Processor and Products

NASA Astrophysics Data System (ADS)

Pflug, Bringfried; Main-Knorn, Magdalena; Bieniarz, Jakub; Debaecker, Vincent; Louis, Jerome

2016-08-01

Sentinel-2 is a constellation of two polar orbiting satellite units each one equipped with an optical imaging sensor MSI (Multi-Spectral Instrument). Sentinel-2A was launched on June 23, 2015 and Sentinel-2B will follow in 2017.The Level-2A (L2A) processor Sen2Cor implemented for Sentinel-2 data provides a scene classification image, aerosol optical thickness (AOT) and water vapour (WV) maps and the Bottom-Of-Atmosphere (BOA) corrected reflectance product. First validation results of Sen2Cor scene classification showed an overall accuracy of 81%. AOT at 550 nm is estimated by Sen2Cor with uncertainty of 0.035 for cloudless images and locations with dense dark vegetation (DDV) pixels present in the image. Aerosol estimation fails if the image contains no DDV-pixels. Mean difference between Sen2Cor WV and ground-truth is 0.29 cm. Uncertainty of up to 0.04 was found for the BOA- reflectance product.

Analysis of MUSIC-type imaging functional for single, thin electromagnetic inhomogeneity in limited-view inverse scattering problem

NASA Astrophysics Data System (ADS)

Ahn, Chi Young; Jeon, Kiwan; Park, Won-Kwang

2015-06-01

This study analyzes the well-known MUltiple SIgnal Classification (MUSIC) algorithm to identify unknown support of thin penetrable electromagnetic inhomogeneity from scattered field data collected within the so-called multi-static response matrix in limited-view inverse scattering problems. The mathematical theories of MUSIC are partially discovered, e.g., in the full-view problem, for an unknown target of dielectric contrast or a perfectly conducting crack with the Dirichlet boundary condition (Transverse Magnetic-TM polarization) and so on. Hence, we perform further research to analyze the MUSIC-type imaging functional and to certify some well-known but theoretically unexplained phenomena. For this purpose, we establish a relationship between the MUSIC imaging functional and an infinite series of Bessel functions of integer order of the first kind. This relationship is based on the rigorous asymptotic expansion formula in the existence of a thin inhomogeneity with a smooth supporting curve. Various results of numerical simulation are presented in order to support the identified structure of MUSIC. Although a priori information of the target is needed, we suggest a least condition of range of incident and observation directions to apply MUSIC in the limited-view problem.

Photometric Supernova Classification with Machine Learning

NASA Astrophysics Data System (ADS)

Lochner, Michelle; McEwen, Jason D.; Peiris, Hiranya V.; Lahav, Ofer; Winter, Max K.

2016-08-01

Automated photometric supernova classification has become an active area of research in recent years in light of current and upcoming imaging surveys such as the Dark Energy Survey (DES) and the Large Synoptic Survey Telescope, given that spectroscopic confirmation of type for all supernovae discovered will be impossible. Here, we develop a multi-faceted classification pipeline, combining existing and new approaches. Our pipeline consists of two stages: extracting descriptive features from the light curves and classification using a machine learning algorithm. Our feature extraction methods vary from model-dependent techniques, namely SALT2 fits, to more independent techniques that fit parametric models to curves, to a completely model-independent wavelet approach. We cover a range of representative machine learning algorithms, including naive Bayes, k-nearest neighbors, support vector machines, artificial neural networks, and boosted decision trees (BDTs). We test the pipeline on simulated multi-band DES light curves from the Supernova Photometric Classification Challenge. Using the commonly used area under the curve (AUC) of the Receiver Operating Characteristic as a metric, we find that the SALT2 fits and the wavelet approach, with the BDTs algorithm, each achieve an AUC of 0.98, where 1 represents perfect classification. We find that a representative training set is essential for good classification, whatever the feature set or algorithm, with implications for spectroscopic follow-up. Importantly, we find that by using either the SALT2 or the wavelet feature sets with a BDT algorithm, accurate classification is possible purely from light curve data, without the need for any redshift information.

Lane Marking Detection and Reconstruction with Line-Scan Imaging Data.

PubMed

Li, Lin; Luo, Wenting; Wang, Kelvin C P

2018-05-20

A bstract: Lane marking detection and localization are crucial for autonomous driving and lane-based pavement surveys. Numerous studies have been done to detect and locate lane markings with the purpose of advanced driver assistance systems, in which image data are usually captured by vision-based cameras. However, a limited number of studies have been done to identify lane markings using high-resolution laser images for road condition evaluation. In this study, the laser images are acquired with a digital highway data vehicle (DHDV). Subsequently, a novel methodology is presented for the automated lane marking identification and reconstruction, and is implemented in four phases: (1) binarization of the laser images with a new threshold method (multi-box segmentation based threshold method); (2) determination of candidate lane markings with closing operations and a marching square algorithm; (3) identification of true lane marking by eliminating false positives (FPs) using a linear support vector machine method; and (4) reconstruction of the damaged and dash lane marking segments to form a continuous lane marking based on the geometry features such as adjacent lane marking location and lane width. Finally, a case study is given to validate effects of the novel methodology. The findings indicate the new strategy is robust in image binarization and lane marking localization. This study would be beneficial in road lane-based pavement condition evaluation such as lane-based rutting measurement and crack classification.

Traffic Sign Recognition with Invariance to Lighting in Dual-Focal Active Camera System

NASA Astrophysics Data System (ADS)

Gu, Yanlei; Panahpour Tehrani, Mehrdad; Yendo, Tomohiro; Fujii, Toshiaki; Tanimoto, Masayuki

In this paper, we present an automatic vision-based traffic sign recognition system, which can detect and classify traffic signs at long distance under different lighting conditions. To realize this purpose, the traffic sign recognition is developed in an originally proposed dual-focal active camera system. In this system, a telephoto camera is equipped as an assistant of a wide angle camera. The telephoto camera can capture a high accuracy image for an object of interest in the view field of the wide angle camera. The image from the telephoto camera provides enough information for recognition when the accuracy of traffic sign is low from the wide angle camera. In the proposed system, the traffic sign detection and classification are processed separately for different images from the wide angle camera and telephoto camera. Besides, in order to detect traffic sign from complex background in different lighting conditions, we propose a type of color transformation which is invariant to light changing. This color transformation is conducted to highlight the pattern of traffic signs by reducing the complexity of background. Based on the color transformation, a multi-resolution detector with cascade mode is trained and used to locate traffic signs at low resolution in the image from the wide angle camera. After detection, the system actively captures a high accuracy image of each detected traffic sign by controlling the direction and exposure time of the telephoto camera based on the information from the wide angle camera. Moreover, in classification, a hierarchical classifier is constructed and used to recognize the detected traffic signs in the high accuracy image from the telephoto camera. Finally, based on the proposed system, a set of experiments in the domain of traffic sign recognition is presented. The experimental results demonstrate that the proposed system can effectively recognize traffic signs at low resolution in different lighting conditions.

Defect inspection in hot slab surface: multi-source CCD imaging based fuzzy-rough sets method

NASA Astrophysics Data System (ADS)

Zhao, Liming; Zhang, Yi; Xu, Xiaodong; Xiao, Hong; Huang, Chao

2016-09-01

To provide an accurate surface defects inspection method and make the automation of robust image region of interests(ROI) delineation strategy a reality in production line, a multi-source CCD imaging based fuzzy-rough sets method is proposed for hot slab surface quality assessment. The applicability of the presented method and the devised system are mainly tied to the surface quality inspection for strip, billet and slab surface etcetera. In this work we take into account the complementary advantages in two common machine vision (MV) systems(line array CCD traditional scanning imaging (LS-imaging) and area array CCD laser three-dimensional (3D) scanning imaging (AL-imaging)), and through establishing the model of fuzzy-rough sets in the detection system the seeds for relative fuzzy connectedness(RFC) delineation for ROI can placed adaptively, which introduces the upper and lower approximation sets for RIO definition, and by which the boundary region can be delineated by RFC region competitive classification mechanism. For the first time, a Multi-source CCD imaging based fuzzy-rough sets strategy is attempted for CC-slab surface defects inspection that allows an automatic way of AI algorithms and powerful ROI delineation strategies to be applied to the MV inspection field.

Sorting Olive Batches for the Milling Process Using Image Processing

PubMed Central

Puerto, Daniel Aguilera; Martínez Gila, Diego Manuel; Gámez García, Javier; Gómez Ortega, Juan

2015-01-01

The quality of virgin olive oil obtained in the milling process is directly bound to the characteristics of the olives. Hence, the correct classification of the different incoming olive batches is crucial to reach the maximum quality of the oil. The aim of this work is to provide an automatic inspection system, based on computer vision, and to classify automatically different batches of olives entering the milling process. The classification is based on the differentiation between ground and tree olives. For this purpose, three different species have been studied (Picudo, Picual and Hojiblanco). The samples have been obtained by picking the olives directly from the tree or from the ground. The feature vector of the samples has been obtained on the basis of the olive image histograms. Moreover, different image preprocessing has been employed, and two classification techniques have been used: these are discriminant analysis and neural networks. The proposed methodology has been validated successfully, obtaining good classification results. PMID:26147729

Visual Impairment/lntracranial Pressure Risk Clinical Care Data Tools

NASA Technical Reports Server (NTRS)

Van Baalen, Mary; Mason, Sara S.; Taiym, Wafa; Wear, Mary L.; Moynihan, Shannan; Alexander, David; Hart, Steve; Tarver, William

2014-01-01

Prior to 2010, several ISS crewmembers returned from spaceflight with changes to their vision, ranging from a mild hyperopic shift to frank disc edema. As a result, NASA expanded clinical vision testing to include more comprehensive medical imaging, including Optical Coherence Tomography and 3 Tesla Brain and Orbit MRIs. The Space and Clinical Operations (SCO) Division developed a clinical practice guideline that classified individuals based on their symptoms and diagnoses to facilitate clinical care. For the purposes of clinical surveillance, this classification was applied retrospectively to all crewmembers who had sufficient testing for classification. This classification is also a tool that has been leveraged for researchers to identify potential risk factors. In March 2014, driven in part by a more comprehensive understanding of the imaging data and increased imaging capability on orbit, the SCO Division revised their clinical care guidance to outline in-flight care and increase post-flight follow up. The new clinical guidance does not include a classification scheme

Investigating the Potential of Deep Neural Networks for Large-Scale Classification of Very High Resolution Satellite Images

NASA Astrophysics Data System (ADS)

Postadjian, T.; Le Bris, A.; Sahbi, H.; Mallet, C.

2017-05-01

Semantic classification is a core remote sensing task as it provides the fundamental input for land-cover map generation. The very recent literature has shown the superior performance of deep convolutional neural networks (DCNN) for many classification tasks including the automatic analysis of Very High Spatial Resolution (VHR) geospatial images. Most of the recent initiatives have focused on very high discrimination capacity combined with accurate object boundary retrieval. Therefore, current architectures are perfectly tailored for urban areas over restricted areas but not designed for large-scale purposes. This paper presents an end-to-end automatic processing chain, based on DCNNs, that aims at performing large-scale classification of VHR satellite images (here SPOT 6/7). Since this work assesses, through various experiments, the potential of DCNNs for country-scale VHR land-cover map generation, a simple yet effective architecture is proposed, efficiently discriminating the main classes of interest (namely buildings, roads, water, crops, vegetated areas) by exploiting existing VHR land-cover maps for training.

Wavelet packets for multi- and hyper-spectral imagery

NASA Astrophysics Data System (ADS)

Benedetto, J. J.; Czaja, W.; Ehler, M.; Flake, C.; Hirn, M.

2010-01-01

State of the art dimension reduction and classification schemes in multi- and hyper-spectral imaging rely primarily on the information contained in the spectral component. To better capture the joint spatial and spectral data distribution we combine the Wavelet Packet Transform with the linear dimension reduction method of Principal Component Analysis. Each spectral band is decomposed by means of the Wavelet Packet Transform and we consider a joint entropy across all the spectral bands as a tool to exploit the spatial information. Dimension reduction is then applied to the Wavelet Packets coefficients. We present examples of this technique for hyper-spectral satellite imaging. We also investigate the role of various shrinkage techniques to model non-linearity in our approach.

Multi-label literature classification based on the Gene Ontology graph.

PubMed

Jin, Bo; Muller, Brian; Zhai, Chengxiang; Lu, Xinghua

2008-12-08

The Gene Ontology is a controlled vocabulary for representing knowledge related to genes and proteins in a computable form. The current effort of manually annotating proteins with the Gene Ontology is outpaced by the rate of accumulation of biomedical knowledge in literature, which urges the development of text mining approaches to facilitate the process by automatically extracting the Gene Ontology annotation from literature. The task is usually cast as a text classification problem, and contemporary methods are confronted with unbalanced training data and the difficulties associated with multi-label classification. In this research, we investigated the methods of enhancing automatic multi-label classification of biomedical literature by utilizing the structure of the Gene Ontology graph. We have studied three graph-based multi-label classification algorithms, including a novel stochastic algorithm and two top-down hierarchical classification methods for multi-label literature classification. We systematically evaluated and compared these graph-based classification algorithms to a conventional flat multi-label algorithm. The results indicate that, through utilizing the information from the structure of the Gene Ontology graph, the graph-based multi-label classification methods can significantly improve predictions of the Gene Ontology terms implied by the analyzed text. Furthermore, the graph-based multi-label classifiers are capable of suggesting Gene Ontology annotations (to curators) that are closely related to the true annotations even if they fail to predict the true ones directly. A software package implementing the studied algorithms is available for the research community. Through utilizing the information from the structure of the Gene Ontology graph, the graph-based multi-label classification methods have better potential than the conventional flat multi-label classification approach to facilitate protein annotation based on the literature.

Optimization of breast mass classification using sequential forward floating selection (SFFS) and a support vector machine (SVM) model

PubMed Central

Tan, Maxine; Pu, Jiantao; Zheng, Bin

2014-01-01

Purpose: Improving radiologists’ performance in classification between malignant and benign breast lesions is important to increase cancer detection sensitivity and reduce false-positive recalls. For this purpose, developing computer-aided diagnosis (CAD) schemes has been attracting research interest in recent years. In this study, we investigated a new feature selection method for the task of breast mass classification. Methods: We initially computed 181 image features based on mass shape, spiculation, contrast, presence of fat or calcifications, texture, isodensity, and other morphological features. From this large image feature pool, we used a sequential forward floating selection (SFFS)-based feature selection method to select relevant features, and analyzed their performance using a support vector machine (SVM) model trained for the classification task. On a database of 600 benign and 600 malignant mass regions of interest (ROIs), we performed the study using a ten-fold cross-validation method. Feature selection and optimization of the SVM parameters were conducted on the training subsets only. Results: The area under the receiver operating characteristic curve (AUC) = 0.805±0.012 was obtained for the classification task. The results also showed that the most frequently-selected features by the SFFS-based algorithm in 10-fold iterations were those related to mass shape, isodensity and presence of fat, which are consistent with the image features frequently used by radiologists in the clinical environment for mass classification. The study also indicated that accurately computing mass spiculation features from the projection mammograms was difficult, and failed to perform well for the mass classification task due to tissue overlap within the benign mass regions. Conclusions: In conclusion, this comprehensive feature analysis study provided new and valuable information for optimizing computerized mass classification schemes that may have potential to be useful as a “second reader” in future clinical practice. PMID:24664267

An unsupervised technique for optimal feature selection in attribute profiles for spectral-spatial classification of hyperspectral images

NASA Astrophysics Data System (ADS)

Bhardwaj, Kaushal; Patra, Swarnajyoti

2018-04-01

Inclusion of spatial information along with spectral features play a significant role in classification of remote sensing images. Attribute profiles have already proved their ability to represent spatial information. In order to incorporate proper spatial information, multiple attributes are required and for each attribute large profiles need to be constructed by varying the filter parameter values within a wide range. Thus, the constructed profiles that represent spectral-spatial information of an hyperspectral image have huge dimension which leads to Hughes phenomenon and increases computational burden. To mitigate these problems, this work presents an unsupervised feature selection technique that selects a subset of filtered image from the constructed high dimensional multi-attribute profile which are sufficiently informative to discriminate well among classes. In this regard the proposed technique exploits genetic algorithms (GAs). The fitness function of GAs are defined in an unsupervised way with the help of mutual information. The effectiveness of the proposed technique is assessed using one-against-all support vector machine classifier. The experiments conducted on three hyperspectral data sets show the robustness of the proposed method in terms of computation time and classification accuracy.

PI2GIS: processing image to geographical information systems, a learning tool for QGIS

NASA Astrophysics Data System (ADS)

Correia, R.; Teodoro, A.; Duarte, L.

2017-10-01

To perform an accurate interpretation of remote sensing images, it is necessary to extract information using different image processing techniques. Nowadays, it became usual to use image processing plugins to add new capabilities/functionalities integrated in Geographical Information System (GIS) software. The aim of this work was to develop an open source application to automatically process and classify remote sensing images from a set of satellite input data. The application was integrated in a GIS software (QGIS), automating several image processing steps. The use of QGIS for this purpose is justified since it is easy and quick to develop new plugins, using Python language. This plugin is inspired in the Semi-Automatic Classification Plugin (SCP) developed by Luca Congedo. SCP allows the supervised classification of remote sensing images, the calculation of vegetation indices such as NDVI (Normalized Difference Vegetation Index) and EVI (Enhanced Vegetation Index) and other image processing operations. When analysing SCP, it was realized that a set of operations, that are very useful in teaching classes of remote sensing and image processing tasks, were lacking, such as the visualization of histograms, the application of filters, different image corrections, unsupervised classification and several environmental indices computation. The new set of operations included in the PI2GIS plugin can be divided into three groups: pre-processing, processing, and classification procedures. The application was tested consider an image from Landsat 8 OLI from a North area of Portugal.

Distinguishing remobilized ash from erupted volcanic plumes using space-borne multi-angle imaging.

PubMed

Flower, Verity J B; Kahn, Ralph A

2017-10-28

Volcanic systems are comprised of a complex combination of ongoing eruptive activity and secondary hazards, such as remobilized ash plumes. Similarities in the visual characteristics of remobilized and erupted plumes, as imaged by satellite-based remote sensing, complicate the accurate classification of these events. The stereo imaging capabilities of the Multi-angle Imaging SpectroRadiometer (MISR) were used to determine the altitude and distribution of suspended particles. Remobilized ash shows distinct dispersion, with particles distributed within ~1.5 km of the surface. Particle transport is consistently constrained by local topography, limiting dispersion pathways downwind. The MISR Research Aerosol (RA) retrieval algorithm was used to assess plume particle microphysical properties. Remobilized ash plumes displayed a dominance of large particles with consistent absorption and angularity properties, distinct from emitted plumes. The combination of vertical distribution, topographic control, and particle microphysical properties makes it possible to distinguish remobilized ash flows from eruptive plumes, globally.

Polsar Land Cover Classification Based on Hidden Polarimetric Features in Rotation Domain and Svm Classifier

NASA Astrophysics Data System (ADS)

Tao, C.-S.; Chen, S.-W.; Li, Y.-Z.; Xiao, S.-P.

2017-09-01

Land cover classification is an important application for polarimetric synthetic aperture radar (PolSAR) data utilization. Rollinvariant polarimetric features such as H / Ani / α / Span are commonly adopted in PolSAR land cover classification. However, target orientation diversity effect makes PolSAR images understanding and interpretation difficult. Only using the roll-invariant polarimetric features may introduce ambiguity in the interpretation of targets' scattering mechanisms and limit the followed classification accuracy. To address this problem, this work firstly focuses on hidden polarimetric feature mining in the rotation domain along the radar line of sight using the recently reported uniform polarimetric matrix rotation theory and the visualization and characterization tool of polarimetric coherence pattern. The former rotates the acquired polarimetric matrix along the radar line of sight and fully describes the rotation characteristics of each entry of the matrix. Sets of new polarimetric features are derived to describe the hidden scattering information of the target in the rotation domain. The latter extends the traditional polarimetric coherence at a given rotation angle to the rotation domain for complete interpretation. A visualization and characterization tool is established to derive new polarimetric features for hidden information exploration. Then, a classification scheme is developed combing both the selected new hidden polarimetric features in rotation domain and the commonly used roll-invariant polarimetric features with a support vector machine (SVM) classifier. Comparison experiments based on AIRSAR and multi-temporal UAVSAR data demonstrate that compared with the conventional classification scheme which only uses the roll-invariant polarimetric features, the proposed classification scheme achieves both higher classification accuracy and better robustness. For AIRSAR data, the overall classification accuracy with the proposed classification scheme is 94.91 %, while that with the conventional classification scheme is 93.70 %. Moreover, for multi-temporal UAVSAR data, the averaged overall classification accuracy with the proposed classification scheme is up to 97.08 %, which is much higher than the 87.79 % from the conventional classification scheme. Furthermore, for multitemporal PolSAR data, the proposed classification scheme can achieve better robustness. The comparison studies also clearly demonstrate that mining and utilization of hidden polarimetric features and information in the rotation domain can gain the added benefits for PolSAR land cover classification and provide a new vision for PolSAR image interpretation and application.

Realizing parameterless automatic classification of remote sensing imagery using ontology engineering and cyberinfrastructure techniques

NASA Astrophysics Data System (ADS)

Sun, Ziheng; Fang, Hui; Di, Liping; Yue, Peng

2016-09-01

It was an untouchable dream for remote sensing experts to realize total automatic image classification without inputting any parameter values. Experts usually spend hours and hours on tuning the input parameters of classification algorithms in order to obtain the best results. With the rapid development of knowledge engineering and cyberinfrastructure, a lot of data processing and knowledge reasoning capabilities become online accessible, shareable and interoperable. Based on these recent improvements, this paper presents an idea of parameterless automatic classification which only requires an image and automatically outputs a labeled vector. No parameters and operations are needed from endpoint consumers. An approach is proposed to realize the idea. It adopts an ontology database to store the experiences of tuning values for classifiers. A sample database is used to record training samples of image segments. Geoprocessing Web services are used as functionality blocks to finish basic classification steps. Workflow technology is involved to turn the overall image classification into a total automatic process. A Web-based prototypical system named PACS (Parameterless Automatic Classification System) is implemented. A number of images are fed into the system for evaluation purposes. The results show that the approach could automatically classify remote sensing images and have a fairly good average accuracy. It is indicated that the classified results will be more accurate if the two databases have higher quality. Once the experiences and samples in the databases are accumulated as many as an expert has, the approach should be able to get the results with similar quality to that a human expert can get. Since the approach is total automatic and parameterless, it can not only relieve remote sensing workers from the heavy and time-consuming parameter tuning work, but also significantly shorten the waiting time for consumers and facilitate them to engage in image classification activities. Currently, the approach is used only on high resolution optical three-band remote sensing imagery. The feasibility using the approach on other kinds of remote sensing images or involving additional bands in classification will be studied in future.

From Classification to Epilepsy Ontology and Informatics

PubMed Central

Zhang, Guo-Qiang; Sahoo, Satya S; Lhatoo, Samden D

2012-01-01

Summary The 2010 International League Against Epilepsy (ILAE) classification and terminology commission report proposed a much needed departure from previous classifications to incorporate advances in molecular biology, neuroimaging, and genetics. It proposed an interim classification and defined two key requirements that need to be satisfied. The first is the ability to classify epilepsy in dimensions according to a variety of purposes including clinical research, patient care, and drug discovery. The second is the ability of the classification system to evolve with new discoveries. Multi-dimensionality and flexibility are crucial to the success of any future classification. In addition, a successful classification system must play a central role in the rapidly growing field of epilepsy informatics. An epilepsy ontology, based on classification, will allow information systems to facilitate data-intensive studies and provide a proven route to meeting the two foregoing key requirements. Epilepsy ontology will be a structured terminology system that accommodates proposed and evolving ILAE classifications, the NIH/NINDS Common Data Elements, the ICD systems and explicitly specifies all known relationships between epilepsy concepts in a proper framework. This will aid evidence based epilepsy diagnosis, investigation, treatment and research for a diverse community of clinicians and researchers. Benefits range from systematization of electronic patient records to multi-modal data repositories for research and training manuals for those involved in epilepsy care. Given the complexity, heterogeneity and pace of research advances in the epilepsy domain, such an ontology must be collaboratively developed by key stakeholders in the epilepsy community and experts in knowledge engineering and computer science. PMID:22765502

Multi-modal classification of neurodegenerative disease by progressive graph-based transductive learning

PubMed Central

Wang, Zhengxia; Zhu, Xiaofeng; Adeli, Ehsan; Zhu, Yingying; Nie, Feiping; Munsell, Brent

2018-01-01

Graph-based transductive learning (GTL) is a powerful machine learning technique that is used when sufficient training data is not available. In particular, conventional GTL approaches first construct a fixed inter-subject relation graph that is based on similarities in voxel intensity values in the feature domain, which can then be used to propagate the known phenotype data (i.e., clinical scores and labels) from the training data to the testing data in the label domain. However, this type of graph is exclusively learned in the feature domain, and primarily due to outliers in the observed features, may not be optimal for label propagation in the label domain. To address this limitation, a progressive GTL (pGTL) method is proposed that gradually finds an intrinsic data representation that more accurately aligns imaging features with the phenotype data. In general, optimal feature-to-phenotype alignment is achieved using an iterative approach that: (1) refines inter-subject relationships observed in the feature domain by using the learned intrinsic data representation in the label domain, (2) updates the intrinsic data representation from the refined inter-subject relationships, and (3) verifies the intrinsic data representation on the training data to guarantee an optimal classification when applied to testing data. Additionally, the iterative approach is extended to multi-modal imaging data to further improve pGTL classification accuracy. Using Alzheimer’s disease and Parkinson’s disease study data, the classification accuracy of the proposed pGTL method is compared to several state-of-the-art classification methods, and the results show pGTL can more accurately identify subjects, even at different progression stages, in these two study data sets. PMID:28551556

Graph Theory-Based Brain Connectivity for Automatic Classification of Multiple Sclerosis Clinical Courses.

PubMed

Kocevar, Gabriel; Stamile, Claudio; Hannoun, Salem; Cotton, François; Vukusic, Sandra; Durand-Dubief, Françoise; Sappey-Marinier, Dominique

2016-01-01

Purpose: In this work, we introduce a method to classify Multiple Sclerosis (MS) patients into four clinical profiles using structural connectivity information. For the first time, we try to solve this question in a fully automated way using a computer-based method. The main goal is to show how the combination of graph-derived metrics with machine learning techniques constitutes a powerful tool for a better characterization and classification of MS clinical profiles. Materials and Methods: Sixty-four MS patients [12 Clinical Isolated Syndrome (CIS), 24 Relapsing Remitting (RR), 24 Secondary Progressive (SP), and 17 Primary Progressive (PP)] along with 26 healthy controls (HC) underwent MR examination. T1 and diffusion tensor imaging (DTI) were used to obtain structural connectivity matrices for each subject. Global graph metrics, such as density and modularity, were estimated and compared between subjects' groups. These metrics were further used to classify patients using tuned Support Vector Machine (SVM) combined with Radial Basic Function (RBF) kernel. Results: When comparing MS patients to HC subjects, a greater assortativity, transitivity, and characteristic path length as well as a lower global efficiency were found. Using all graph metrics, the best F -Measures (91.8, 91.8, 75.6, and 70.6%) were obtained for binary (HC-CIS, CIS-RR, RR-PP) and multi-class (CIS-RR-SP) classification tasks, respectively. When using only one graph metric, the best F -Measures (83.6, 88.9, and 70.7%) were achieved for modularity with previous binary classification tasks. Conclusion: Based on a simple DTI acquisition associated with structural brain connectivity analysis, this automatic method allowed an accurate classification of different MS patients' clinical profiles.

Local binary pattern texture-based classification of solid masses in ultrasound breast images

NASA Astrophysics Data System (ADS)

Matsumoto, Monica M. S.; Sehgal, Chandra M.; Udupa, Jayaram K.

2012-03-01

Breast cancer is one of the leading causes of cancer mortality among women. Ultrasound examination can be used to assess breast masses, complementarily to mammography. Ultrasound images reveal tissue information in its echoic patterns. Therefore, pattern recognition techniques can facilitate classification of lesions and thereby reduce the number of unnecessary biopsies. Our hypothesis was that image texture features on the boundary of a lesion and its vicinity can be used to classify masses. We have used intensity-independent and rotation-invariant texture features, known as Local Binary Patterns (LBP). The classifier selected was K-nearest neighbors. Our breast ultrasound image database consisted of 100 patient images (50 benign and 50 malignant cases). The determination of whether the mass was benign or malignant was done through biopsy and pathology assessment. The training set consisted of sixty images, randomly chosen from the database of 100 patients. The testing set consisted of forty images to be classified. The results with a multi-fold cross validation of 100 iterations produced a robust evaluation. The highest performance was observed for feature LBP with 24 symmetrically distributed neighbors over a circle of radius 3 (LBP24,3) with an accuracy rate of 81.0%. We also investigated an approach with a score of malignancy assigned to the images in the test set. This approach provided an ROC curve with Az of 0.803. The analysis of texture features over the boundary of solid masses showed promise for malignancy classification in ultrasound breast images.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Islam, Md. Shafiqul, E-mail: shafique@eng.ukm.my; Hannan, M.A., E-mail: hannan@eng.ukm.my; Basri, Hassan

Highlights: • Solid waste bin level detection using Dynamic Time Warping (DTW). • Gabor wavelet filter is used to extract the solid waste image features. • Multi-Layer Perceptron classifier network is used for bin image classification. • The classification performance evaluated by ROC curve analysis. - Abstract: The increasing requirement for Solid Waste Management (SWM) has become a significant challenge for municipal authorities. A number of integrated systems and methods have introduced to overcome this challenge. Many researchers have aimed to develop an ideal SWM system, including approaches involving software-based routing, Geographic Information Systems (GIS), Radio-frequency Identification (RFID), or sensormore » intelligent bins. Image processing solutions for the Solid Waste (SW) collection have also been developed; however, during capturing the bin image, it is challenging to position the camera for getting a bin area centralized image. As yet, there is no ideal system which can correctly estimate the amount of SW. This paper briefly discusses an efficient image processing solution to overcome these problems. Dynamic Time Warping (DTW) was used for detecting and cropping the bin area and Gabor wavelet (GW) was introduced for feature extraction of the waste bin image. Image features were used to train the classifier. A Multi-Layer Perceptron (MLP) classifier was used to classify the waste bin level and estimate the amount of waste inside the bin. The area under the Receiver Operating Characteristic (ROC) curves was used to statistically evaluate classifier performance. The results of this developed system are comparable to previous image processing based system. The system demonstration using DTW with GW for feature extraction and an MLP classifier led to promising results with respect to the accuracy of waste level estimation (98.50%). The application can be used to optimize the routing of waste collection based on the estimated bin level.« less

Comparison of using single- or multi-polarimetric TerraSAR-X images for segmentation and classification of man-made maritime objects

NASA Astrophysics Data System (ADS)

Teutsch, Michael; Saur, Günter

2011-11-01

Spaceborne SAR imagery offers high capability for wide-ranging maritime surveillance especially in situations, where AIS (Automatic Identification System) data is not available. Therefore, maritime objects have to be detected and optional information such as size, orientation, or object/ship class is desired. In recent research work, we proposed a SAR processing chain consisting of pre-processing, detection, segmentation, and classification for single-polarimetric (HH) TerraSAR-X StripMap images to finally assign detection hypotheses to class "clutter", "non-ship", "unstructured ship", or "ship structure 1" (bulk carrier appearance) respectively "ship structure 2" (oil tanker appearance). In this work, we extend the existing processing chain and are now able to handle full-polarimetric (HH, HV, VH, VV) TerraSAR-X data. With the possibility of better noise suppression using the different polarizations, we slightly improve both the segmentation and the classification process. In several experiments we demonstrate the potential benefit for segmentation and classification. Precision of size and orientation estimation as well as correct classification rates are calculated individually for single- and quad-polarization and compared to each other.

Developing collaborative classifiers using an expert-based model

USGS Publications Warehouse

Mountrakis, G.; Watts, R.; Luo, L.; Wang, Jingyuan

2009-01-01

This paper presents a hierarchical, multi-stage adaptive strategy for image classification. We iteratively apply various classification methods (e.g., decision trees, neural networks), identify regions of parametric and geographic space where accuracy is low, and in these regions, test and apply alternate methods repeating the process until the entire image is classified. Currently, classifiers are evaluated through human input using an expert-based system; therefore, this paper acts as the proof of concept for collaborative classifiers. Because we decompose the problem into smaller, more manageable sub-tasks, our classification exhibits increased flexibility compared to existing methods since classification methods are tailored to the idiosyncrasies of specific regions. A major benefit of our approach is its scalability and collaborative support since selected low-accuracy classifiers can be easily replaced with others without affecting classification accuracy in high accuracy areas. At each stage, we develop spatially explicit accuracy metrics that provide straightforward assessment of results by non-experts and point to areas that need algorithmic improvement or ancillary data. Our approach is demonstrated in the task of detecting impervious surface areas, an important indicator for human-induced alterations to the environment, using a 2001 Landsat scene from Las Vegas, Nevada. ?? 2009 American Society for Photogrammetry and Remote Sensing.

Linear Subpixel Learning Algorithm for Land Cover Classification from WELD using High Performance Computing

NASA Technical Reports Server (NTRS)

Kumar, Uttam; Nemani, Ramakrishna R.; Ganguly, Sangram; Kalia, Subodh; Michaelis, Andrew

2017-01-01

In this work, we use a Fully Constrained Least Squares Subpixel Learning Algorithm to unmix global WELD (Web Enabled Landsat Data) to obtain fractions or abundances of substrate (S), vegetation (V) and dark objects (D) classes. Because of the sheer nature of data and compute needs, we leveraged the NASA Earth Exchange (NEX) high performance computing architecture to optimize and scale our algorithm for large-scale processing. Subsequently, the S-V-D abundance maps were characterized into 4 classes namely, forest, farmland, water and urban areas (with NPP-VIIRS-national polar orbiting partnership visible infrared imaging radiometer suite nighttime lights data) over California, USA using Random Forest classifier. Validation of these land cover maps with NLCD (National Land Cover Database) 2011 products and NAFD (North American Forest Dynamics) static forest cover maps showed that an overall classification accuracy of over 91 percent was achieved, which is a 6 percent improvement in unmixing based classification relative to per-pixel-based classification. As such, abundance maps continue to offer an useful alternative to high-spatial resolution data derived classification maps for forest inventory analysis, multi-class mapping for eco-climatic models and applications, fast multi-temporal trend analysis and for societal and policy-relevant applications needed at the watershed scale.

Linear Subpixel Learning Algorithm for Land Cover Classification from WELD using High Performance Computing

NASA Astrophysics Data System (ADS)

Ganguly, S.; Kumar, U.; Nemani, R. R.; Kalia, S.; Michaelis, A.

2017-12-01

In this work, we use a Fully Constrained Least Squares Subpixel Learning Algorithm to unmix global WELD (Web Enabled Landsat Data) to obtain fractions or abundances of substrate (S), vegetation (V) and dark objects (D) classes. Because of the sheer nature of data and compute needs, we leveraged the NASA Earth Exchange (NEX) high performance computing architecture to optimize and scale our algorithm for large-scale processing. Subsequently, the S-V-D abundance maps were characterized into 4 classes namely, forest, farmland, water and urban areas (with NPP-VIIRS - national polar orbiting partnership visible infrared imaging radiometer suite nighttime lights data) over California, USA using Random Forest classifier. Validation of these land cover maps with NLCD (National Land Cover Database) 2011 products and NAFD (North American Forest Dynamics) static forest cover maps showed that an overall classification accuracy of over 91% was achieved, which is a 6% improvement in unmixing based classification relative to per-pixel based classification. As such, abundance maps continue to offer an useful alternative to high-spatial resolution data derived classification maps for forest inventory analysis, multi-class mapping for eco-climatic models and applications, fast multi-temporal trend analysis and for societal and policy-relevant applications needed at the watershed scale.

TU-FG-209-11: Validation of a Channelized Hotelling Observer to Optimize Chest Radiography Image Processing for Nodule Detection: A Human Observer Study

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sanchez, A; Little, K; Chung, J

Purpose: To validate the use of a Channelized Hotelling Observer (CHO) model for guiding image processing parameter selection and enable improved nodule detection in digital chest radiography. Methods: In a previous study, an anthropomorphic chest phantom was imaged with and without PMMA simulated nodules using a GE Discovery XR656 digital radiography system. The impact of image processing parameters was then explored using a CHO with 10 Laguerre-Gauss channels. In this work, we validate the CHO’s trend in nodule detectability as a function of two processing parameters by conducting a signal-known-exactly, multi-reader-multi-case (MRMC) ROC observer study. Five naive readers scored confidencemore » of nodule visualization in 384 images with 50% nodule prevalence. The image backgrounds were regions-of-interest extracted from 6 normal patient scans, and the digitally inserted simulated nodules were obtained from phantom data in previous work. Each patient image was processed with both a near-optimal and a worst-case parameter combination, as determined by the CHO for nodule detection. The same 192 ROIs were used for each image processing method, with 32 randomly selected lung ROIs per patient image. Finally, the MRMC data was analyzed using the freely available iMRMC software of Gallas et al. Results: The image processing parameters which were optimized for the CHO led to a statistically significant improvement (p=0.049) in human observer AUC from 0.78 to 0.86, relative to the image processing implementation which produced the lowest CHO performance. Conclusion: Differences in user-selectable image processing methods on a commercially available digital radiography system were shown to have a marked impact on performance of human observers in the task of lung nodule detection. Further, the effect of processing on humans was similar to the effect on CHO performance. Future work will expand this study to include a wider range of detection/classification tasks and more observers, including experienced chest radiologists.« less

2015 Gout classification criteria: an American College of Rheumatology/European League Against Rheumatism collaborative initiative

PubMed Central

Neogi, Tuhina; Jansen, Tim L Th A; Dalbeth, Nicola; Fransen, Jaap; Schumacher, H Ralph; Berendsen, Dianne; Brown, Melanie; Choi, Hyon; Edwards, N Lawrence; Janssens, Hein J E M; Lioté, Frédéric; Naden, Raymond P; Nuki, George; Ogdie, Alexis; Perez-Ruiz, Fernando; Saag, Kenneth; Singh, Jasvinder A; Sundy, John S; Tausche, Anne-Kathrin; Vaquez-Mellado, Janitzia; Yarows, Steven A; Taylor, William J

2015-01-01

Objective Existing criteria for the classification of gout have suboptimal sensitivity and/or specificity, and were developed at a time when advanced imaging was not available. The current effort was undertaken to develop new classification criteria for gout. Methods An international group of investigators, supported by the American College of Rheumatology and the European League Against Rheumatism, conducted a systematic review of the literature on advanced imaging of gout, a diagnostic study in which the presence of monosodium urate monohydrate (MSU) crystals in synovial fluid or tophus was the gold standard, a ranking exercise of paper patient cases, and a multi-criterion decision analysis exercise. These data formed the basis for developing the classification criteria, which were tested in an independent data set. Results The entry criterion for the new classification criteria requires the occurrence of at least one episode of peripheral joint or bursal swelling, pain, or tenderness. The presence of MSU crystals in a symptomatic joint/bursa (ie, synovial fluid) or in a tophus is a sufficient criterion for classification of the subject as having gout, and does not require further scoring. The domains of the new classification criteria include clinical (pattern of joint/bursa involvement, characteristics and time course of symptomatic episodes), laboratory (serum urate, MSU-negative synovial fluid aspirate), and imaging (double-contour sign on ultrasound or urate on dual-energy CT, radiographic gout-related erosion). The sensitivity and specificity of the criteria are high (92% and 89%, respectively). Conclusions The new classification criteria, developed using a data-driven and decision-analytic approach, have excellent performance characteristics and incorporate current state-of-the-art evidence regarding gout. PMID:26359487

Classification and disease prediction via mathematical programming

NASA Astrophysics Data System (ADS)

Lee, Eva K.; Wu, Tsung-Lin

2007-11-01

In this chapter, we present classification models based on mathematical programming approaches. We first provide an overview on various mathematical programming approaches, including linear programming, mixed integer programming, nonlinear programming and support vector machines. Next, we present our effort of novel optimization-based classification models that are general purpose and suitable for developing predictive rules for large heterogeneous biological and medical data sets. Our predictive model simultaneously incorporates (1) the ability to classify any number of distinct groups; (2) the ability to incorporate heterogeneous types of attributes as input; (3) a high-dimensional data transformation that eliminates noise and errors in biological data; (4) the ability to incorporate constraints to limit the rate of misclassification, and a reserved-judgment region that provides a safeguard against over-training (which tends to lead to high misclassification rates from the resulting predictive rule) and (5) successive multi-stage classification capability to handle data points placed in the reserved judgment region. To illustrate the power and flexibility of the classification model and solution engine, and its multigroup prediction capability, application of the predictive model to a broad class of biological and medical problems is described. Applications include: the differential diagnosis of the type of erythemato-squamous diseases; predicting presence/absence of heart disease; genomic analysis and prediction of aberrant CpG island meythlation in human cancer; discriminant analysis of motility and morphology data in human lung carcinoma; prediction of ultrasonic cell disruption for drug delivery; identification of tumor shape and volume in treatment of sarcoma; multistage discriminant analysis of biomarkers for prediction of early atherosclerois; fingerprinting of native and angiogenic microvascular networks for early diagnosis of diabetes, aging, macular degeneracy and tumor metastasis; prediction of protein localization sites; and pattern recognition of satellite images in classification of soil types. In all these applications, the predictive model yields correct classification rates ranging from 80% to 100%. This provides motivation for pursuing its use as a medical diagnostic, monitoring and decision-making tool.

Colorectal cancer detection by hyperspectral imaging using fluorescence excitation scanning

NASA Astrophysics Data System (ADS)

Leavesley, Silas J.; Deal, Joshua; Hill, Shante; Martin, Will A.; Lall, Malvika; Lopez, Carmen; Rider, Paul F.; Rich, Thomas C.; Boudreaux, Carole W.

2018-02-01

Hyperspectral imaging technologies have shown great promise for biomedical applications. These techniques have been especially useful for detection of molecular events and characterization of cell, tissue, and biomaterial composition. Unfortunately, hyperspectral imaging technologies have been slow to translate to clinical devices - likely due to increased cost and complexity of the technology as well as long acquisition times often required to sample a spectral image. We have demonstrated that hyperspectral imaging approaches which scan the fluorescence excitation spectrum can provide increased signal strength and faster imaging, compared to traditional emission-scanning approaches. We have also demonstrated that excitation-scanning approaches may be able to detect spectral differences between colonic adenomas and adenocarcinomas and normal mucosa in flash-frozen tissues. Here, we report feasibility results from using excitation-scanning hyperspectral imaging to screen pairs of fresh tumoral and nontumoral colorectal tissues. Tissues were imaged using a novel hyperspectral imaging fluorescence excitation scanning microscope, sampling a wavelength range of 360-550 nm, at 5 nm increments. Image data were corrected to achieve a NIST-traceable flat spectral response. Image data were then analyzed using a range of supervised and unsupervised classification approaches within ENVI software (Harris Geospatial Solutions). Supervised classification resulted in >99% accuracy for single-patient image data, but only 64% accuracy for multi-patient classification (n=9 to date), with the drop in accuracy due to increased false-positive detection rates. Hence, initial data indicate that this approach may be a viable detection approach, but that larger patient sample sizes need to be evaluated and the effects of inter-patient variability studied.

Structural knowledge learning from maps for supervised land cover/use classification: Application to the monitoring of land cover/use maps in French Guiana

NASA Astrophysics Data System (ADS)

Bayoudh, Meriam; Roux, Emmanuel; Richard, Gilles; Nock, Richard

2015-03-01

The number of satellites and sensors devoted to Earth observation has become increasingly elevated, delivering extensive data, especially images. At the same time, the access to such data and the tools needed to process them has considerably improved. In the presence of such data flow, we need automatic image interpretation methods, especially when it comes to the monitoring and prediction of environmental and societal changes in highly dynamic socio-environmental contexts. This could be accomplished via artificial intelligence. The concept described here relies on the induction of classification rules that explicitly take into account structural knowledge, using Aleph, an Inductive Logic Programming (ILP) system, combined with a multi-class classification procedure. This methodology was used to monitor changes in land cover/use of the French Guiana coastline. One hundred and fifty-eight classification rules were induced from 3 diachronic land cover/use maps including 38 classes. These rules were expressed in first order logic language, which makes them easily understandable by non-experts. A 10-fold cross-validation gave significant average values of 84.62%, 99.57% and 77.22% for classification accuracy, specificity and sensitivity, respectively. Our methodology could be beneficial to automatically classify new objects and to facilitate object-based classification procedures.

Lidar-based individual tree species classification using convolutional neural network

NASA Astrophysics Data System (ADS)

Mizoguchi, Tomohiro; Ishii, Akira; Nakamura, Hiroyuki; Inoue, Tsuyoshi; Takamatsu, Hisashi

2017-06-01

Terrestrial lidar is commonly used for detailed documentation in the field of forest inventory investigation. Recent improvements of point cloud processing techniques enabled efficient and precise computation of an individual tree shape parameters, such as breast-height diameter, height, and volume. However, tree species are manually specified by skilled workers to date. Previous works for automatic tree species classification mainly focused on aerial or satellite images, and few works have been reported for classification techniques using ground-based sensor data. Several candidate sensors can be considered for classification, such as RGB or multi/hyper spectral cameras. Above all candidates, we use terrestrial lidar because it can obtain high resolution point cloud in the dark forest. We selected bark texture for the classification criteria, since they clearly represent unique characteristics of each tree and do not change their appearance under seasonable variation and aged deterioration. In this paper, we propose a new method for automatic individual tree species classification based on terrestrial lidar using Convolutional Neural Network (CNN). The key component is the creation step of a depth image which well describe the characteristics of each species from a point cloud. We focus on Japanese cedar and cypress which cover the large part of domestic forest. Our experimental results demonstrate the effectiveness of our proposed method.

Sensing Urban Land-Use Patterns by Integrating Google Tensorflow and Scene-Classification Models

NASA Astrophysics Data System (ADS)

Yao, Y.; Liang, H.; Li, X.; Zhang, J.; He, J.

2017-09-01

With the rapid progress of China's urbanization, research on the automatic detection of land-use patterns in Chinese cities is of substantial importance. Deep learning is an effective method to extract image features. To take advantage of the deep-learning method in detecting urban land-use patterns, we applied a transfer-learning-based remote-sensing image approach to extract and classify features. Using the Google Tensorflow framework, a powerful convolution neural network (CNN) library was created. First, the transferred model was previously trained on ImageNet, one of the largest object-image data sets, to fully develop the model's ability to generate feature vectors of standard remote-sensing land-cover data sets (UC Merced and WHU-SIRI). Then, a random-forest-based classifier was constructed and trained on these generated vectors to classify the actual urban land-use pattern on the scale of traffic analysis zones (TAZs). To avoid the multi-scale effect of remote-sensing imagery, a large random patch (LRP) method was used. The proposed method could efficiently obtain acceptable accuracy (OA = 0.794, Kappa = 0.737) for the study area. In addition, the results show that the proposed method can effectively overcome the multi-scale effect that occurs in urban land-use classification at the irregular land-parcel level. The proposed method can help planners monitor dynamic urban land use and evaluate the impact of urban-planning schemes.

Material identification in x-ray microscopy and micro CT using multi-layer, multi-color scintillation detectors

PubMed Central

Modgil, Dimple; Rigie, David S.; Wang, Yuxin; Xiao, Xianghui; Vargas, Phillip A.; La Rivière, Patrick J.

2015-01-01

We demonstrate that a dual-layer, dual-color scintillator construct for microscopic CT, originally proposed to increase sensitivity in synchrotron imaging, can also be used to perform material quantification and classification when coupled with polychromatic illumination. We consider two different approaches to data handling: (1) a data-domain material decomposition whose estimation performance can be characterized by the Cramer-Rao Lower Bound formalism but which requires careful calibration and (2) an image-domain material classification approach that is more robust to calibration errors. The data-domain analysis indicates that useful levels of SNR (>5) could be achieved in one second or less at typical bending magnet fluxes for relatively large amounts of contrast (several mm path length, such as in a fluid flow experiment) and at typical undulator fluxes for small amount of contrast (tens of microns path length, such as an angiography experiment). The tools introduced could of course be used to study and optimize parameters for a wider range of potential applications. The image domain approach was analyzed in terms of its ability to distinguish different elemental stains by characterizing the angle between the lines traced out in a two-dimensional space of effective attenuation coefficient in the front and back layer images. This approach was implemented at a synchrotron and the results were consistent with simulation predictions. PMID:26422059

Material identification in x-ray microscopy and micro CT using multi-layer, multi-color scintillation detectors

DOE Office of Scientific and Technical Information (OSTI.GOV)

Modgil, Dimple; Rigie, David S.; Wang, Yuxin

We demonstrate that a dual-layer, dual-color scintillator construct for microscopic CT, originally proposed to increase sensitivity in synchrotron imaging, can also be used to perform material quantification and classification when coupled with polychromatic illumination. We consider two different approaches to data handling: (1) a data-domain material decomposition whose estimation performance can be characterized by the Cramer-Rao lower bound formalism but which requires careful calibration and (2) an image-domain material classification approach that is more robust to calibration errors. The data-domain analysis indicates that useful levels of SNR (>5) could be achieved in one second or less at typical bending magnetmore » fluxes for relatively large amounts of contrast (several mm path length, such as in a fluid flow experiment) and at typical undulator fluxes for small amount of contrast (tens of microns path length, such as an angiography experiment). The tools introduced could of course be used to study and optimize parameters for a wider range of potential applications. The image domain approach was analyzed in terms of its ability to distinguish different elemental stains by characterizing the angle between the lines traced out in a two-dimensional space of effective attenuation coefficient in the front and back layer images. As a result, this approach was implemented at a synchrotron and the results were consistent with simulation predictions.« less

Material identification in x-ray microscopy and micro CT using multi-layer, multi-color scintillation detectors

DOE PAGES

Modgil, Dimple; Rigie, David S.; Wang, Yuxin; ...

2015-09-30

We demonstrate that a dual-layer, dual-color scintillator construct for microscopic CT, originally proposed to increase sensitivity in synchrotron imaging, can also be used to perform material quantification and classification when coupled with polychromatic illumination. We consider two different approaches to data handling: (1) a data-domain material decomposition whose estimation performance can be characterized by the Cramer-Rao lower bound formalism but which requires careful calibration and (2) an image-domain material classification approach that is more robust to calibration errors. The data-domain analysis indicates that useful levels of SNR (>5) could be achieved in one second or less at typical bending magnetmore » fluxes for relatively large amounts of contrast (several mm path length, such as in a fluid flow experiment) and at typical undulator fluxes for small amount of contrast (tens of microns path length, such as an angiography experiment). The tools introduced could of course be used to study and optimize parameters for a wider range of potential applications. The image domain approach was analyzed in terms of its ability to distinguish different elemental stains by characterizing the angle between the lines traced out in a two-dimensional space of effective attenuation coefficient in the front and back layer images. As a result, this approach was implemented at a synchrotron and the results were consistent with simulation predictions.« less

Large-area settlement pattern recognition from Landsat-8 data

NASA Astrophysics Data System (ADS)

Wieland, Marc; Pittore, Massimiliano

2016-09-01

The study presents an image processing and analysis pipeline that combines object-based image analysis with a Support Vector Machine to derive a multi-layered settlement product from Landsat-8 data over large areas. 43 image scenes are processed over large parts of Central Asia (Southern Kazakhstan, Kyrgyzstan, Tajikistan and Eastern Uzbekistan). The main tasks tackled by this work include built-up area identification, settlement type classification and urban structure types pattern recognition. Besides commonly used accuracy assessments of the resulting map products, thorough performance evaluations are carried out under varying conditions to tune algorithm parameters and assess their applicability for the given tasks. As part of this, several research questions are being addressed. In particular the influence of the improved spatial and spectral resolution of Landsat-8 on the SVM performance to identify built-up areas and urban structure types are evaluated. Also the influence of an extended feature space including digital elevation model features is tested for mountainous regions. Moreover, the spatial distribution of classification uncertainties is analyzed and compared to the heterogeneity of the building stock within the computational unit of the segments. The study concludes that the information content of Landsat-8 images is sufficient for the tested classification tasks and even detailed urban structures could be extracted with satisfying accuracy. Freely available ancillary settlement point location data could further improve the built-up area classification. Digital elevation features and pan-sharpening could, however, not significantly improve the classification results. The study highlights the importance of dynamically tuned classifier parameters, and underlines the use of Shannon entropy computed from the soft answers of the SVM as a valid measure of the spatial distribution of classification uncertainties.

MATtrack: A MATLAB-Based Quantitative Image Analysis Platform for Investigating Real-Time Photo-Converted Fluorescent Signals in Live Cells.

PubMed

Courtney, Jane; Woods, Elena; Scholz, Dimitri; Hall, William W; Gautier, Virginie W

2015-01-01

We introduce here MATtrack, an open source MATLAB-based computational platform developed to process multi-Tiff files produced by a photo-conversion time lapse protocol for live cell fluorescent microscopy. MATtrack automatically performs a series of steps required for image processing, including extraction and import of numerical values from Multi-Tiff files, red/green image classification using gating parameters, noise filtering, background extraction, contrast stretching and temporal smoothing. MATtrack also integrates a series of algorithms for quantitative image analysis enabling the construction of mean and standard deviation images, clustering and classification of subcellular regions and injection point approximation. In addition, MATtrack features a simple user interface, which enables monitoring of Fluorescent Signal Intensity in multiple Regions of Interest, over time. The latter encapsulates a region growing method to automatically delineate the contours of Regions of Interest selected by the user, and performs background and regional Average Fluorescence Tracking, and automatic plotting. Finally, MATtrack computes convenient visualization and exploration tools including a migration map, which provides an overview of the protein intracellular trajectories and accumulation areas. In conclusion, MATtrack is an open source MATLAB-based software package tailored to facilitate the analysis and visualization of large data files derived from real-time live cell fluorescent microscopy using photoconvertible proteins. It is flexible, user friendly, compatible with Windows, Mac, and Linux, and a wide range of data acquisition software. MATtrack is freely available for download at eleceng.dit.ie/courtney/MATtrack.zip.

MATtrack: A MATLAB-Based Quantitative Image Analysis Platform for Investigating Real-Time Photo-Converted Fluorescent Signals in Live Cells

PubMed Central

Courtney, Jane; Woods, Elena; Scholz, Dimitri; Hall, William W.; Gautier, Virginie W.

2015-01-01

We introduce here MATtrack, an open source MATLAB-based computational platform developed to process multi-Tiff files produced by a photo-conversion time lapse protocol for live cell fluorescent microscopy. MATtrack automatically performs a series of steps required for image processing, including extraction and import of numerical values from Multi-Tiff files, red/green image classification using gating parameters, noise filtering, background extraction, contrast stretching and temporal smoothing. MATtrack also integrates a series of algorithms for quantitative image analysis enabling the construction of mean and standard deviation images, clustering and classification of subcellular regions and injection point approximation. In addition, MATtrack features a simple user interface, which enables monitoring of Fluorescent Signal Intensity in multiple Regions of Interest, over time. The latter encapsulates a region growing method to automatically delineate the contours of Regions of Interest selected by the user, and performs background and regional Average Fluorescence Tracking, and automatic plotting. Finally, MATtrack computes convenient visualization and exploration tools including a migration map, which provides an overview of the protein intracellular trajectories and accumulation areas. In conclusion, MATtrack is an open source MATLAB-based software package tailored to facilitate the analysis and visualization of large data files derived from real-time live cell fluorescent microscopy using photoconvertible proteins. It is flexible, user friendly, compatible with Windows, Mac, and Linux, and a wide range of data acquisition software. MATtrack is freely available for download at eleceng.dit.ie/courtney/MATtrack.zip. PMID:26485569

Exploring the Potential of High Resolution Remote Sensing Data for Mapping Vegetation and the Age Groups of Oil Palm Plantation

NASA Astrophysics Data System (ADS)

Kamiran, N.; Sarker, M. L. R.

2014-02-01

The land use/land cover transformation in Malaysia is enormous due to palm oil plantation which has provided huge economical benefits but also created a huge concern for carbon emission and biodiversity. Accurate information about oil palm plantation and the age of plantation is important for a sustainable production, estimation of carbon storage capacity, biodiversity and the climate model. However, the problem is that this information cannot be extracted easily due to the spectral signature for forest and age group of palm oil plantations is similar. Therefore, a noble approach "multi-scale and multi-texture algorithms" was used for mapping vegetation and different age groups of palm oil plantation using a high resolution panchromatic image (WorldView-1) considering the fact that pan imagery has a potential for more detailed and accurate mapping with an effective image processing technique. Seven texture algorithms of second-order Grey Level Co-occurrence Matrix (GLCM) with different scales (from 3×3 to 39×39) were used for texture generation. All texture parameters were classified step by step using a robust classifier "Artificial Neural Network (ANN)". Results indicate that single spectral band was unable to provide good result (overall accuracy = 34.92%), while higher overall classification accuracies (73.48%, 84.76% and 93.18%) were obtained when textural information from multi-scale and multi-texture approach were used in the classification algorithm.

A semi-automated image analysis procedure for in situ plankton imaging systems.

PubMed

Bi, Hongsheng; Guo, Zhenhua; Benfield, Mark C; Fan, Chunlei; Ford, Michael; Shahrestani, Suzan; Sieracki, Jeffery M

2015-01-01

Plankton imaging systems are capable of providing fine-scale observations that enhance our understanding of key physical and biological processes. However, processing the large volumes of data collected by imaging systems remains a major obstacle for their employment, and existing approaches are designed either for images acquired under laboratory controlled conditions or within clear waters. In the present study, we developed a semi-automated approach to analyze plankton taxa from images acquired by the ZOOplankton VISualization (ZOOVIS) system within turbid estuarine waters, in Chesapeake Bay. When compared to images under laboratory controlled conditions or clear waters, images from highly turbid waters are often of relatively low quality and more variable, due to the large amount of objects and nonlinear illumination within each image. We first customized a segmentation procedure to locate objects within each image and extracted them for classification. A maximally stable extremal regions algorithm was applied to segment large gelatinous zooplankton and an adaptive threshold approach was developed to segment small organisms, such as copepods. Unlike the existing approaches for images acquired from laboratory, controlled conditions or clear waters, the target objects are often the majority class, and the classification can be treated as a multi-class classification problem. We customized a two-level hierarchical classification procedure using support vector machines to classify the target objects (< 5%), and remove the non-target objects (> 95%). First, histograms of oriented gradients feature descriptors were constructed for the segmented objects. In the first step all non-target and target objects were classified into different groups: arrow-like, copepod-like, and gelatinous zooplankton. Each object was passed to a group-specific classifier to remove most non-target objects. After the object was classified, an expert or non-expert then manually removed the non-target objects that could not be removed by the procedure. The procedure was tested on 89,419 images collected in Chesapeake Bay, and results were consistent with visual counts with >80% accuracy for all three groups.

A Semi-Automated Image Analysis Procedure for In Situ Plankton Imaging Systems

PubMed Central

Bi, Hongsheng; Guo, Zhenhua; Benfield, Mark C.; Fan, Chunlei; Ford, Michael; Shahrestani, Suzan; Sieracki, Jeffery M.

2015-01-01

Plankton imaging systems are capable of providing fine-scale observations that enhance our understanding of key physical and biological processes. However, processing the large volumes of data collected by imaging systems remains a major obstacle for their employment, and existing approaches are designed either for images acquired under laboratory controlled conditions or within clear waters. In the present study, we developed a semi-automated approach to analyze plankton taxa from images acquired by the ZOOplankton VISualization (ZOOVIS) system within turbid estuarine waters, in Chesapeake Bay. When compared to images under laboratory controlled conditions or clear waters, images from highly turbid waters are often of relatively low quality and more variable, due to the large amount of objects and nonlinear illumination within each image. We first customized a segmentation procedure to locate objects within each image and extracted them for classification. A maximally stable extremal regions algorithm was applied to segment large gelatinous zooplankton and an adaptive threshold approach was developed to segment small organisms, such as copepods. Unlike the existing approaches for images acquired from laboratory, controlled conditions or clear waters, the target objects are often the majority class, and the classification can be treated as a multi-class classification problem. We customized a two-level hierarchical classification procedure using support vector machines to classify the target objects (< 5%), and remove the non-target objects (> 95%). First, histograms of oriented gradients feature descriptors were constructed for the segmented objects. In the first step all non-target and target objects were classified into different groups: arrow-like, copepod-like, and gelatinous zooplankton. Each object was passed to a group-specific classifier to remove most non-target objects. After the object was classified, an expert or non-expert then manually removed the non-target objects that could not be removed by the procedure. The procedure was tested on 89,419 images collected in Chesapeake Bay, and results were consistent with visual counts with >80% accuracy for all three groups. PMID:26010260

Localized contourlet features in vehicle make and model recognition

NASA Astrophysics Data System (ADS)

Zafar, I.; Edirisinghe, E. A.; Acar, B. S.

2009-02-01

Automatic vehicle Make and Model Recognition (MMR) systems provide useful performance enhancements to vehicle recognitions systems that are solely based on Automatic Number Plate Recognition (ANPR) systems. Several vehicle MMR systems have been proposed in literature. In parallel to this, the usefulness of multi-resolution based feature analysis techniques leading to efficient object classification algorithms have received close attention from the research community. To this effect, Contourlet transforms that can provide an efficient directional multi-resolution image representation has recently been introduced. Already an attempt has been made in literature to use Curvelet/Contourlet transforms in vehicle MMR. In this paper we propose a novel localized feature detection method in Contourlet transform domain that is capable of increasing the classification rates up to 4%, as compared to the previously proposed Contourlet based vehicle MMR approach in which the features are non-localized and thus results in sub-optimal classification. Further we show that the proposed algorithm can achieve the increased classification accuracy of 96% at significantly lower computational complexity due to the use of Two Dimensional Linear Discriminant Analysis (2DLDA) for dimensionality reduction by preserving the features with high between-class variance and low inter-class variance.

Co-trained convolutional neural networks for automated detection of prostate cancer in multi-parametric MRI.

PubMed

Yang, Xin; Liu, Chaoyue; Wang, Zhiwei; Yang, Jun; Min, Hung Le; Wang, Liang; Cheng, Kwang-Ting Tim

2017-12-01

Multi-parameter magnetic resonance imaging (mp-MRI) is increasingly popular for prostate cancer (PCa) detection and diagnosis. However, interpreting mp-MRI data which typically contains multiple unregistered 3D sequences, e.g. apparent diffusion coefficient (ADC) and T2-weighted (T2w) images, is time-consuming and demands special expertise, limiting its usage for large-scale PCa screening. Therefore, solutions to computer-aided detection of PCa in mp-MRI images are highly desirable. Most recent advances in automated methods for PCa detection employ a handcrafted feature based two-stage classification flow, i.e. voxel-level classification followed by a region-level classification. This work presents an automated PCa detection system which can concurrently identify the presence of PCa in an image and localize lesions based on deep convolutional neural network (CNN) features and a single-stage SVM classifier. Specifically, the developed co-trained CNNs consist of two parallel convolutional networks for ADC and T2w images respectively. Each network is trained using images of a single modality in a weakly-supervised manner by providing a set of prostate images with image-level labels indicating only the presence of PCa without priors of lesions' locations. Discriminative visual patterns of lesions can be learned effectively from clutters of prostate and surrounding tissues. A cancer response map with each pixel indicating the likelihood to be cancerous is explicitly generated at the last convolutional layer of the network for each modality. A new back-propagated error E is defined to enforce both optimized classification results and consistent cancer response maps for different modalities, which help capture highly representative PCa-relevant features during the CNN feature learning process. The CNN features of each modality are concatenated and fed into a SVM classifier. For images which are classified to contain cancers, non-maximum suppression and adaptive thresholding are applied to the corresponding cancer response maps for PCa foci localization. Evaluation based on 160 patient data with 12-core systematic TRUS-guided prostate biopsy as the reference standard demonstrates that our system achieves a sensitivity of 0.46, 0.92 and 0.97 at 0.1, 1 and 10 false positives per normal/benign patient which is significantly superior to two state-of-the-art CNN-based methods (Oquab et al., 2015; Zhou et al., 2015) and 6-core systematic prostate biopsies. Copyright © 2017 Elsevier B.V. All rights reserved.

Effect of Subliminal Lexical Priming on the Subjective Perception of Images: A Machine Learning Approach.

PubMed

Mohan, Dhanya Menoth; Kumar, Parmod; Mahmood, Faisal; Wong, Kian Foong; Agrawal, Abhishek; Elgendi, Mohamed; Shukla, Rohit; Ang, Natania; Ching, April; Dauwels, Justin; Chan, Alice H D

2016-01-01

The purpose of the study is to examine the effect of subliminal priming in terms of the perception of images influenced by words with positive, negative, and neutral emotional content, through electroencephalograms (EEGs). Participants were instructed to rate how much they like the stimuli images, on a 7-point Likert scale, after being subliminally exposed to masked lexical prime words that exhibit positive, negative, and neutral connotations with respect to the images. Simultaneously, the EEGs were recorded. Statistical tests such as repeated measures ANOVAs and two-tailed paired-samples t-tests were performed to measure significant differences in the likability ratings among the three prime affect types; the results showed a strong shift in the likeness judgment for the images in the positively primed condition compared to the other two. The acquired EEGs were examined to assess the difference in brain activity associated with the three different conditions. The consistent results obtained confirmed the overall priming effect on participants' explicit ratings. In addition, machine learning algorithms such as support vector machines (SVMs), and AdaBoost classifiers were applied to infer the prime affect type from the ERPs. The highest classification rates of 95.0% and 70.0% obtained respectively for average-trial binary classifier and average-trial multi-class further emphasize that the ERPs encode information about the different kinds of primes.

Effect of Subliminal Lexical Priming on the Subjective Perception of Images: A Machine Learning Approach

PubMed Central

Mahmood, Faisal; Wong, Kian Foong; Agrawal, Abhishek; Elgendi, Mohamed; Shukla, Rohit; Ang, Natania; Ching, April; Dauwels, Justin; Chan, Alice H. D.

2016-01-01

The purpose of the study is to examine the effect of subliminal priming in terms of the perception of images influenced by words with positive, negative, and neutral emotional content, through electroencephalograms (EEGs). Participants were instructed to rate how much they like the stimuli images, on a 7-point Likert scale, after being subliminally exposed to masked lexical prime words that exhibit positive, negative, and neutral connotations with respect to the images. Simultaneously, the EEGs were recorded. Statistical tests such as repeated measures ANOVAs and two-tailed paired-samples t-tests were performed to measure significant differences in the likability ratings among the three prime affect types; the results showed a strong shift in the likeness judgment for the images in the positively primed condition compared to the other two. The acquired EEGs were examined to assess the difference in brain activity associated with the three different conditions. The consistent results obtained confirmed the overall priming effect on participants’ explicit ratings. In addition, machine learning algorithms such as support vector machines (SVMs), and AdaBoost classifiers were applied to infer the prime affect type from the ERPs. The highest classification rates of 95.0% and 70.0% obtained respectively for average-trial binary classifier and average-trial multi-class further emphasize that the ERPs encode information about the different kinds of primes. PMID:26866807

Human cell structure-driven model construction for predicting protein subcellular location from biological images.

PubMed

Shao, Wei; Liu, Mingxia; Zhang, Daoqiang

2016-01-01

The systematic study of subcellular location pattern is very important for fully characterizing the human proteome. Nowadays, with the great advances in automated microscopic imaging, accurate bioimage-based classification methods to predict protein subcellular locations are highly desired. All existing models were constructed on the independent parallel hypothesis, where the cellular component classes are positioned independently in a multi-class classification engine. The important structural information of cellular compartments is missed. To deal with this problem for developing more accurate models, we proposed a novel cell structure-driven classifier construction approach (SC-PSorter) by employing the prior biological structural information in the learning model. Specifically, the structural relationship among the cellular components is reflected by a new codeword matrix under the error correcting output coding framework. Then, we construct multiple SC-PSorter-based classifiers corresponding to the columns of the error correcting output coding codeword matrix using a multi-kernel support vector machine classification approach. Finally, we perform the classifier ensemble by combining those multiple SC-PSorter-based classifiers via majority voting. We evaluate our method on a collection of 1636 immunohistochemistry images from the Human Protein Atlas database. The experimental results show that our method achieves an overall accuracy of 89.0%, which is 6.4% higher than the state-of-the-art method. The dataset and code can be downloaded from https://github.com/shaoweinuaa/. dqzhang@nuaa.edu.cn Supplementary data are available at Bioinformatics online. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

A multi-temporal analysis approach for land cover mapping in support of nuclear incident response

NASA Astrophysics Data System (ADS)

Sah, Shagan; van Aardt, Jan A. N.; McKeown, Donald M.; Messinger, David W.

2012-06-01

Remote sensing can be used to rapidly generate land use maps for assisting emergency response personnel with resource deployment decisions and impact assessments. In this study we focus on constructing accurate land cover maps to map the impacted area in the case of a nuclear material release. The proposed methodology involves integration of results from two different approaches to increase classification accuracy. The data used included RapidEye scenes over Nine Mile Point Nuclear Power Station (Oswego, NY). The first step was building a coarse-scale land cover map from freely available, high temporal resolution, MODIS data using a time-series approach. In the case of a nuclear accident, high spatial resolution commercial satellites such as RapidEye or IKONOS can acquire images of the affected area. Land use maps from the two image sources were integrated using a probability-based approach. Classification results were obtained for four land classes - forest, urban, water and vegetation - using Euclidean and Mahalanobis distances as metrics. Despite the coarse resolution of MODIS pixels, acceptable accuracies were obtained using time series features. The overall accuracies using the fusion based approach were in the neighborhood of 80%, when compared with GIS data sets from New York State. The classifications were augmented using this fused approach, with few supplementary advantages such as correction for cloud cover and independence from time of year. We concluded that this method would generate highly accurate land maps, using coarse spatial resolution time series satellite imagery and a single date, high spatial resolution, multi-spectral image.

Assessments of SENTINEL-2 Vegetation Red-Edge Spectral Bands for Improving Land Cover Classification

NASA Astrophysics Data System (ADS)

Qiu, S.; He, B.; Yin, C.; Liao, Z.

2017-09-01

The Multi Spectral Instrument (MSI) onboard Sentinel-2 can record the information in Vegetation Red-Edge (VRE) spectral domains. In this study, the performance of the VRE bands on improving land cover classification was evaluated based on a Sentinel-2A MSI image in East Texas, USA. Two classification scenarios were designed by excluding and including the VRE bands. A Random Forest (RF) classifier was used to generate land cover maps and evaluate the contributions of different spectral bands. The combination of VRE bands increased the overall classification accuracy by 1.40 %, which was statistically significant. Both confusion matrices and land cover maps indicated that the most beneficial increase was from vegetation-related land cover types, especially agriculture. Comparison of the relative importance of each band showed that the most beneficial VRE bands were Band 5 and Band 6. These results demonstrated the value of VRE bands for land cover classification.

Agricultural Land Use mapping by multi-sensor approach for hydrological water quality monitoring

NASA Astrophysics Data System (ADS)

Brodsky, Lukas; Kodesova, Radka; Kodes, Vit

2010-05-01

The main objective of this study is to demonstrate potential of operational use of the high and medium resolution remote sensing data for hydrological water quality monitoring by mapping agriculture intensity and crop structures. In particular use of remote sensing mapping for optimization of pesticide monitoring. The agricultural mapping task is tackled by means of medium spatial and high temporal resolution ESA Envisat MERIS FR images together with single high spatial resolution IRS AWiFS image covering the whole area of interest (the Czech Republic). High resolution data (e.g. SPOT, ALOS, Landsat) are often used for agricultural land use classification, but usually only at regional or local level due to data availability and financial constraints. AWiFS data (nominal spatial resolution 56 m) due to the wide satellite swath seems to be more suitable for use at national level. Nevertheless, one of the critical issues for such a classification is to have sufficient image acquisitions over the whole vegetation period to describe crop development in appropriate way. ESA MERIS middle-resolution data were used in several studies for crop classification. The high temporal and also spectral resolution of MERIS data has indisputable advantage for crop classification. However, spatial resolution of 300 m results in mixture signal in a single pixel. AWiFS-MERIS data synergy brings new perspectives in agricultural Land Use mapping. Also, the developed methodology procedure is fully compatible with future use of ESA (GMES) Sentinel satellite images. The applied methodology of hybrid multi-sensor approach consists of these main stages: a/ parcel segmentation and spectral pre-classification of high resolution image (AWiFS); b/ ingestion of middle resolution (MERIS) vegetation spectro-temporal features; c/ vegetation signatures unmixing; and d/ semantic object-oriented classification of vegetation classes into final classification scheme. These crop groups were selected to be classified: winter crops, spring crops, oilseed rape, legumes, summer and other crops. This study highlights operational potentials of high temporal full resolution MERIS images in agricultural land use monitoring. Practical application of this methodology is foreseen, among others, in the water quality monitoring. Effective pesticide monitoring relies also on spatial distribution of applied pesticides, which can be derived from crop - plant protection product relationship. Knowledge of areas with predominant occurrence of specific crop based on remote sensing data described above can be used for a forecast of probable plant protection product application, thus cost-effective pesticide monitoring. The remote sensing data used on a continuous basis can be used in other long-term water management issues and provide valuable data for decision makers. Acknowledgement: Authors acknowledge the financial support of the Ministry of Education, Youth and Sports of the Czech Republic (grants No. 2B06095 and No. MSM 6046070901). The study was also supported by ESA CAT-1 (ref. 4358) and SOSI projects (Spatial Observation Services and Infrastructure; ref. GSTP-RTDA-EOPG-SW-08-0004).

Left ventricular mass and hypertrophy by echocardiography and cardiac magnetic resonance: the multi-ethnic study of atherosclerosis.

PubMed

Armstrong, Anderson C; Gjesdal, Ola; Almeida, André; Nacif, Marcelo; Wu, Colin; Bluemke, David A; Brumback, Lyndia; Lima, João A C

2014-01-01

Left ventricular mass (LVM) and hypertrophy (LVH) are important parameters, but their use is surrounded by controversies. We compare LVM by echocardiography and cardiac magnetic resonance (CMR), investigating reproducibility aspects and the effect of echocardiography image quality. We also compare indexing methods within and between imaging modalities for classification of LVH and cardiovascular risk. Multi-Ethnic Study of Atherosclerosis enrolled 880 participants in Baltimore city, 146 had echocardiograms and CMR on the same day. LVM was then assessed using standard techniques. Echocardiography image quality was rated (good/limited) according to the parasternal view. LVH was defined after indexing LVM to body surface area, height(1.7) , height(2.7) , or by the predicted LVM from a reference group. Participants were classified for cardiovascular risk according to Framingham score. Pearson's correlation, Bland-Altman plots, percent agreement, and kappa coefficient assessed agreement within and between modalities. Left ventricular mass by echocardiography (140 ± 40 g) and by CMR were correlated (r = 0.8, P < 0.001) regardless of the echocardiography image quality. The reproducibility profile had strong correlations and agreement for both modalities. Image quality groups had similar characteristics; those with good images compared to CMR slightly superiorly. The prevalence of LVH tended to be higher with higher cardiovascular risk. The agreement for LVH between imaging modalities ranged from 77% to 98% and the kappa coefficient from 0.10 to 0.76. Echocardiography has a reliable performance for LVM assessment and classification of LVH, with limited influence of image quality. Echocardiography and CMR differ in the assessment of LVH, and additional differences rise from the indexing methods. © 2013. This article is a U.S. Government work and is in the public domain in the USA.

Towards a More Efficient Detection of Earthquake Induced FAÇADE Damages Using Oblique Uav Imagery

NASA Astrophysics Data System (ADS)

Duarte, D.; Nex, F.; Kerle, N.; Vosselman, G.

2017-08-01

Urban search and rescue (USaR) teams require a fast and thorough building damage assessment, to focus their rescue efforts accordingly. Unmanned aerial vehicles (UAV) are able to capture relevant data in a short time frame and survey otherwise inaccessible areas after a disaster, and have thus been identified as useful when coupled with RGB cameras for façade damage detection. Existing literature focuses on the extraction of 3D and/or image features as cues for damage. However, little attention has been given to the efficiency of the proposed methods which hinders its use in an urban search and rescue context. The framework proposed in this paper aims at a more efficient façade damage detection using UAV multi-view imagery. This was achieved directing all damage classification computations only to the image regions containing the façades, hence discarding the irrelevant areas of the acquired images and consequently reducing the time needed for such task. To accomplish this, a three-step approach is proposed: i) building extraction from the sparse point cloud computed from the nadir images collected in an initial flight; ii) use of the latter as proxy for façade location in the oblique images captured in subsequent flights, and iii) selection of the façade image regions to be fed to a damage classification routine. The results show that the proposed framework successfully reduces the extracted façade image regions to be assessed for damage 6 fold, hence increasing the efficiency of subsequent damage detection routines. The framework was tested on a set of UAV multi-view images over a neighborhood of the city of L'Aquila, Italy, affected in 2009 by an earthquake.

Retinal Microaneurysms Detection Using Gradient Vector Analysis and Class Imbalance Classification.

PubMed

Dai, Baisheng; Wu, Xiangqian; Bu, Wei

2016-01-01

Retinal microaneurysms (MAs) are the earliest clinically observable lesions of diabetic retinopathy. Reliable automated MAs detection is thus critical for early diagnosis of diabetic retinopathy. This paper proposes a novel method for the automated MAs detection in color fundus images based on gradient vector analysis and class imbalance classification, which is composed of two stages, i.e. candidate MAs extraction and classification. In the first stage, a candidate MAs extraction algorithm is devised by analyzing the gradient field of the image, in which a multi-scale log condition number map is computed based on the gradient vectors for vessel removal, and then the candidate MAs are localized according to the second order directional derivatives computed in different directions. Due to the complexity of fundus image, besides a small number of true MAs, there are also a large amount of non-MAs in the extracted candidates. Classifying the true MAs and the non-MAs is an extremely class imbalanced classification problem. Therefore, in the second stage, several types of features including geometry, contrast, intensity, edge, texture, region descriptors and other features are extracted from the candidate MAs and a class imbalance classifier, i.e., RUSBoost, is trained for the MAs classification. With the Retinopathy Online Challenge (ROC) criterion, the proposed method achieves an average sensitivity of 0.433 at 1/8, 1/4, 1/2, 1, 2, 4 and 8 false positives per image on the ROC database, which is comparable with the state-of-the-art approaches, and 0.321 on the DiaRetDB1 V2.1 database, which outperforms the state-of-the-art approaches.

Deep feature learning for knee cartilage segmentation using a triplanar convolutional neural network.

PubMed

Prasoon, Adhish; Petersen, Kersten; Igel, Christian; Lauze, François; Dam, Erik; Nielsen, Mads

2013-01-01

Segmentation of anatomical structures in medical images is often based on a voxel/pixel classification approach. Deep learning systems, such as convolutional neural networks (CNNs), can infer a hierarchical representation of images that fosters categorization. We propose a novel system for voxel classification integrating three 2D CNNs, which have a one-to-one association with the xy, yz and zx planes of 3D image, respectively. We applied our method to the segmentation of tibial cartilage in low field knee MRI scans and tested it on 114 unseen scans. Although our method uses only 2D features at a single scale, it performs better than a state-of-the-art method using 3D multi-scale features. In the latter approach, the features and the classifier have been carefully adapted to the problem at hand. That we were able to get better results by a deep learning architecture that autonomously learns the features from the images is the main insight of this study.

A support vector machine-based method to identify mild cognitive impairment with multi-level characteristics of magnetic resonance imaging.

PubMed

Long, Zhuqing; Jing, Bin; Yan, Huagang; Dong, Jianxin; Liu, Han; Mo, Xiao; Han, Ying; Li, Haiyun

2016-09-07

Mild cognitive impairment (MCI) represents a transitional state between normal aging and Alzheimer's disease (AD). Non-invasive diagnostic methods are desirable to identify MCI for early therapeutic interventions. In this study, we proposed a support vector machine (SVM)-based method to discriminate between MCI patients and normal controls (NCs) using multi-level characteristics of magnetic resonance imaging (MRI). This method adopted a radial basis function (RBF) as the kernel function, and a grid search method to optimize the two parameters of SVM. The calculated characteristics, i.e., the Hurst exponent (HE), amplitude of low-frequency fluctuations (ALFF), regional homogeneity (ReHo) and gray matter density (GMD), were adopted as the classification features. A leave-one-out cross-validation (LOOCV) was used to evaluate the classification performance of the method. Applying the proposed method to the experimental data from 29 MCI patients and 33 healthy subjects, we achieved a classification accuracy of up to 96.77%, with a sensitivity of 93.10% and a specificity of 100%, and the area under the curve (AUC) yielded up to 0.97. Furthermore, the most discriminative features for classification were found to predominantly involve default-mode regions, such as hippocampus (HIP), parahippocampal gyrus (PHG), posterior cingulate gyrus (PCG) and middle frontal gyrus (MFG), and subcortical regions such as lentiform nucleus (LN) and amygdala (AMYG). Therefore, our method is promising in distinguishing MCI patients from NCs and may be useful for the diagnosis of MCI. Copyright © 2016 IBRO. Published by Elsevier Ltd. All rights reserved.

An AdaBoost Based Approach to Automatic Classification and Detection of Buildings Footprints, Vegetation Areas and Roads from Satellite Images

NASA Astrophysics Data System (ADS)

Gonulalan, Cansu

In recent years, there has been an increasing demand for applications to monitor the targets related to land-use, using remote sensing images. Advances in remote sensing satellites give rise to the research in this area. Many applications ranging from urban growth planning to homeland security have already used the algorithms for automated object recognition from remote sensing imagery. However, they have still problems such as low accuracy on detection of targets, specific algorithms for a specific area etc. In this thesis, we focus on an automatic approach to classify and detect building foot-prints, road networks and vegetation areas. The automatic interpretation of visual data is a comprehensive task in computer vision field. The machine learning approaches improve the capability of classification in an intelligent way. We propose a method, which has high accuracy on detection and classification. The multi class classification is developed for detecting multiple objects. We present an AdaBoost-based approach along with the supervised learning algorithm. The combi- nation of AdaBoost with "Attentional Cascade" is adopted from Viola and Jones [1]. This combination decreases the computation time and gives opportunity to real time applications. For the feature extraction step, our contribution is to combine Haar-like features that include corner, rectangle and Gabor. Among all features, AdaBoost selects only critical features and generates in extremely efficient cascade structured classifier. Finally, we present and evaluate our experimental results. The overall system is tested and high performance of detection is achieved. The precision rate of the final multi-class classifier is over 98%.

Image classification of human carcinoma cells using complex wavelet-based covariance descriptors.

PubMed

Keskin, Furkan; Suhre, Alexander; Kose, Kivanc; Ersahin, Tulin; Cetin, A Enis; Cetin-Atalay, Rengul

2013-01-01

Cancer cell lines are widely used for research purposes in laboratories all over the world. Computer-assisted classification of cancer cells can alleviate the burden of manual labeling and help cancer research. In this paper, we present a novel computerized method for cancer cell line image classification. The aim is to automatically classify 14 different classes of cell lines including 7 classes of breast and 7 classes of liver cancer cells. Microscopic images containing irregular carcinoma cell patterns are represented by subwindows which correspond to foreground pixels. For each subwindow, a covariance descriptor utilizing the dual-tree complex wavelet transform (DT-[Formula: see text]WT) coefficients and several morphological attributes are computed. Directionally selective DT-[Formula: see text]WT feature parameters are preferred primarily because of their ability to characterize edges at multiple orientations which is the characteristic feature of carcinoma cell line images. A Support Vector Machine (SVM) classifier with radial basis function (RBF) kernel is employed for final classification. Over a dataset of 840 images, we achieve an accuracy above 98%, which outperforms the classical covariance-based methods. The proposed system can be used as a reliable decision maker for laboratory studies. Our tool provides an automated, time- and cost-efficient analysis of cancer cell morphology to classify different cancer cell lines using image-processing techniques, which can be used as an alternative to the costly short tandem repeat (STR) analysis. The data set used in this manuscript is available as supplementary material through http://signal.ee.bilkent.edu.tr/cancerCellLineClassificationSampleImages.html.

Image Classification of Human Carcinoma Cells Using Complex Wavelet-Based Covariance Descriptors

PubMed Central

Keskin, Furkan; Suhre, Alexander; Kose, Kivanc; Ersahin, Tulin; Cetin, A. Enis; Cetin-Atalay, Rengul

2013-01-01

Cancer cell lines are widely used for research purposes in laboratories all over the world. Computer-assisted classification of cancer cells can alleviate the burden of manual labeling and help cancer research. In this paper, we present a novel computerized method for cancer cell line image classification. The aim is to automatically classify 14 different classes of cell lines including 7 classes of breast and 7 classes of liver cancer cells. Microscopic images containing irregular carcinoma cell patterns are represented by subwindows which correspond to foreground pixels. For each subwindow, a covariance descriptor utilizing the dual-tree complex wavelet transform (DT-WT) coefficients and several morphological attributes are computed. Directionally selective DT-WT feature parameters are preferred primarily because of their ability to characterize edges at multiple orientations which is the characteristic feature of carcinoma cell line images. A Support Vector Machine (SVM) classifier with radial basis function (RBF) kernel is employed for final classification. Over a dataset of 840 images, we achieve an accuracy above 98%, which outperforms the classical covariance-based methods. The proposed system can be used as a reliable decision maker for laboratory studies. Our tool provides an automated, time- and cost-efficient analysis of cancer cell morphology to classify different cancer cell lines using image-processing techniques, which can be used as an alternative to the costly short tandem repeat (STR) analysis. The data set used in this manuscript is available as supplementary material through http://signal.ee.bilkent.edu.tr/cancerCellLineClassificationSampleImages.html. PMID:23341908

PHOTOMETRIC SUPERNOVA CLASSIFICATION WITH MACHINE LEARNING

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lochner, Michelle; Peiris, Hiranya V.; Lahav, Ofer

Automated photometric supernova classification has become an active area of research in recent years in light of current and upcoming imaging surveys such as the Dark Energy Survey (DES) and the Large Synoptic Survey Telescope, given that spectroscopic confirmation of type for all supernovae discovered will be impossible. Here, we develop a multi-faceted classification pipeline, combining existing and new approaches. Our pipeline consists of two stages: extracting descriptive features from the light curves and classification using a machine learning algorithm. Our feature extraction methods vary from model-dependent techniques, namely SALT2 fits, to more independent techniques that fit parametric models tomore » curves, to a completely model-independent wavelet approach. We cover a range of representative machine learning algorithms, including naive Bayes, k -nearest neighbors, support vector machines, artificial neural networks, and boosted decision trees (BDTs). We test the pipeline on simulated multi-band DES light curves from the Supernova Photometric Classification Challenge. Using the commonly used area under the curve (AUC) of the Receiver Operating Characteristic as a metric, we find that the SALT2 fits and the wavelet approach, with the BDTs algorithm, each achieve an AUC of 0.98, where 1 represents perfect classification. We find that a representative training set is essential for good classification, whatever the feature set or algorithm, with implications for spectroscopic follow-up. Importantly, we find that by using either the SALT2 or the wavelet feature sets with a BDT algorithm, accurate classification is possible purely from light curve data, without the need for any redshift information.« less

Ensemble support vector machine classification of dementia using structural MRI and mini-mental state examination.

PubMed

Sørensen, Lauge; Nielsen, Mads

2018-05-15

The International Challenge for Automated Prediction of MCI from MRI data offered independent, standardized comparison of machine learning algorithms for multi-class classification of normal control (NC), mild cognitive impairment (MCI), converting MCI (cMCI), and Alzheimer's disease (AD) using brain imaging and general cognition. We proposed to use an ensemble of support vector machines (SVMs) that combined bagging without replacement and feature selection. SVM is the most commonly used algorithm in multivariate classification of dementia, and it was therefore valuable to evaluate the potential benefit of ensembling this type of classifier. The ensemble SVM, using either a linear or a radial basis function (RBF) kernel, achieved multi-class classification accuracies of 55.6% and 55.0% in the challenge test set (60 NC, 60 MCI, 60 cMCI, 60 AD), resulting in a third place in the challenge. Similar feature subset sizes were obtained for both kernels, and the most frequently selected MRI features were the volumes of the two hippocampal subregions left presubiculum and right subiculum. Post-challenge analysis revealed that enforcing a minimum number of selected features and increasing the number of ensemble classifiers improved classification accuracy up to 59.1%. The ensemble SVM outperformed single SVM classifications consistently in the challenge test set. Ensemble methods using bagging and feature selection can improve the performance of the commonly applied SVM classifier in dementia classification. This resulted in competitive classification accuracies in the International Challenge for Automated Prediction of MCI from MRI data. Copyright © 2018 Elsevier B.V. All rights reserved.

A review of supervised object-based land-cover image classification

NASA Astrophysics Data System (ADS)

Ma, Lei; Li, Manchun; Ma, Xiaoxue; Cheng, Liang; Du, Peijun; Liu, Yongxue

2017-08-01

Object-based image classification for land-cover mapping purposes using remote-sensing imagery has attracted significant attention in recent years. Numerous studies conducted over the past decade have investigated a broad array of sensors, feature selection, classifiers, and other factors of interest. However, these research results have not yet been synthesized to provide coherent guidance on the effect of different supervised object-based land-cover classification processes. In this study, we first construct a database with 28 fields using qualitative and quantitative information extracted from 254 experimental cases described in 173 scientific papers. Second, the results of the meta-analysis are reported, including general characteristics of the studies (e.g., the geographic range of relevant institutes, preferred journals) and the relationships between factors of interest (e.g., spatial resolution and study area or optimal segmentation scale, accuracy and number of targeted classes), especially with respect to the classification accuracy of different sensors, segmentation scale, training set size, supervised classifiers, and land-cover types. Third, useful data on supervised object-based image classification are determined from the meta-analysis. For example, we find that supervised object-based classification is currently experiencing rapid advances, while development of the fuzzy technique is limited in the object-based framework. Furthermore, spatial resolution correlates with the optimal segmentation scale and study area, and Random Forest (RF) shows the best performance in object-based classification. The area-based accuracy assessment method can obtain stable classification performance, and indicates a strong correlation between accuracy and training set size, while the accuracy of the point-based method is likely to be unstable due to mixed objects. In addition, the overall accuracy benefits from higher spatial resolution images (e.g., unmanned aerial vehicle) or agricultural sites where it also correlates with the number of targeted classes. More than 95.6% of studies involve an area less than 300 ha, and the spatial resolution of images is predominantly between 0 and 2 m. Furthermore, we identify some methods that may advance supervised object-based image classification. For example, deep learning and type-2 fuzzy techniques may further improve classification accuracy. Lastly, scientists are strongly encouraged to report results of uncertainty studies to further explore the effects of varied factors on supervised object-based image classification.

Predicting primary progressive aphasias with support vector machine approaches in structural MRI data.

PubMed

Bisenius, Sandrine; Mueller, Karsten; Diehl-Schmid, Janine; Fassbender, Klaus; Grimmer, Timo; Jessen, Frank; Kassubek, Jan; Kornhuber, Johannes; Landwehrmeyer, Bernhard; Ludolph, Albert; Schneider, Anja; Anderl-Straub, Sarah; Stuke, Katharina; Danek, Adrian; Otto, Markus; Schroeter, Matthias L

2017-01-01

Primary progressive aphasia (PPA) encompasses the three subtypes nonfluent/agrammatic variant PPA, semantic variant PPA, and the logopenic variant PPA, which are characterized by distinct patterns of language difficulties and regional brain atrophy. To validate the potential of structural magnetic resonance imaging data for early individual diagnosis, we used support vector machine classification on grey matter density maps obtained by voxel-based morphometry analysis to discriminate PPA subtypes (44 patients: 16 nonfluent/agrammatic variant PPA, 17 semantic variant PPA, 11 logopenic variant PPA) from 20 healthy controls (matched for sample size, age, and gender) in the cohort of the multi-center study of the German consortium for frontotemporal lobar degeneration. Here, we compared a whole-brain with a meta-analysis-based disease-specific regions-of-interest approach for support vector machine classification. We also used support vector machine classification to discriminate the three PPA subtypes from each other. Whole brain support vector machine classification enabled a very high accuracy between 91 and 97% for identifying specific PPA subtypes vs. healthy controls, and 78/95% for the discrimination between semantic variant vs. nonfluent/agrammatic or logopenic PPA variants. Only for the discrimination between nonfluent/agrammatic and logopenic PPA variants accuracy was low with 55%. Interestingly, the regions that contributed the most to the support vector machine classification of patients corresponded largely to the regions that were atrophic in these patients as revealed by group comparisons. Although the whole brain approach took also into account regions that were not covered in the regions-of-interest approach, both approaches showed similar accuracies due to the disease-specificity of the selected networks. Conclusion, support vector machine classification of multi-center structural magnetic resonance imaging data enables prediction of PPA subtypes with a very high accuracy paving the road for its application in clinical settings.

The image evaluation of iterative motion correction reconstruction algorithm PROPELLER T2-weighted imaging compared with MultiVane T2-weighted imaging

NASA Astrophysics Data System (ADS)

Lee, Suk-Jun; Yu, Seung-Man

2017-08-01

The purpose of this study was to evaluate the usefulness and clinical applications of MultiVaneXD which was applying iterative motion correction reconstruction algorithm T2-weighted images compared with MultiVane images taken with a 3T MRI. A total of 20 patients with suspected pathologies of the liver and pancreatic-biliary system based on clinical and laboratory findings underwent upper abdominal MRI, acquired using the MultiVane and MultiVaneXD techniques. Two reviewers analyzed the MultiVane and MultiVaneXD T2-weighted images qualitatively and quantitatively. Each reviewer evaluated vessel conspicuity by observing motion artifacts and the sharpness of the portal vein, hepatic vein, and upper organs. The signal-to-noise ratio (SNR) and contrast-to-noise ratio (CNR) were calculated by one reviewer for quantitative analysis. The interclass correlation coefficient was evaluated to measure inter-observer reliability. There were significant differences between MultiVane and MultiVaneXD in motion artifact evaluation. Furthermore, MultiVane was given a better score than MultiVaneXD in abdominal organ sharpness and vessel conspicuity, but the difference was insignificant. The reliability coefficient values were over 0.8 in every evaluation. MultiVaneXD (2.12) showed a higher value than did MultiVane (1.98), but the difference was insignificant ( p = 0.135). MultiVaneXD is a motion correction method that is more advanced than MultiVane, and it produced an increased SNR, resulting in a greater ability to detect focal abdominal lesions.

Biomarkers for Musculoskeletal Pain Conditions: Use of Brain Imaging and Machine Learning.

PubMed

Boissoneault, Jeff; Sevel, Landrew; Letzen, Janelle; Robinson, Michael; Staud, Roland

2017-01-01

Chronic musculoskeletal pain condition often shows poor correlations between tissue abnormalities and clinical pain. Therefore, classification of pain conditions like chronic low back pain, osteoarthritis, and fibromyalgia depends mostly on self report and less on objective findings like X-ray or magnetic resonance imaging (MRI) changes. However, recent advances in structural and functional brain imaging have identified brain abnormalities in chronic pain conditions that can be used for illness classification. Because the analysis of complex and multivariate brain imaging data is challenging, machine learning techniques have been increasingly utilized for this purpose. The goal of machine learning is to train specific classifiers to best identify variables of interest on brain MRIs (i.e., biomarkers). This report describes classification techniques capable of separating MRI-based brain biomarkers of chronic pain patients from healthy controls with high accuracy (70-92%) using machine learning, as well as critical scientific, practical, and ethical considerations related to their potential clinical application. Although self-report remains the gold standard for pain assessment, machine learning may aid in the classification of chronic pain disorders like chronic back pain and fibromyalgia as well as provide mechanistic information regarding their neural correlates.

Multi-Resolution Imaging of Electron Dynamics in Nanostructure Interfaces

DTIC Science & Technology

2010-07-27

metallic carbon nanotubes from semiconducting ones. In pentacene transistors, we used scanning photocurrent microscopy to study spatially resolved...photoelectric response of pentacene thin films, which showed that point contacts formed near the hole injection points limit the overall performance of the...photothermal current microscopy, carbon nanotube transistor, pentacene transistor, contact resistance, hole injection 16. SECURITY CLASSIFICATION OF

Determination of Classification Accuracy for Land Use/cover Types Using Landsat-Tm Spot-Mss and Multipolarized and Multi-Channel Synthetic Aperture Radar

NASA Astrophysics Data System (ADS)

Dondurur, Mehmet

The primary objective of this study was to determine the degree to which modern SAR systems can be used to obtain information about the Earth's vegetative resources. Information obtainable from microwave synthetic aperture radar (SAR) data was compared with that obtainable from LANDSAT-TM and SPOT data. Three hypotheses were tested: (a) Classification of land cover/use from SAR data can be accomplished on a pixel-by-pixel basis with the same overall accuracy as from LANDSAT-TM and SPOT data. (b) Classification accuracy for individual land cover/use classes will differ between sensors. (c) Combining information derived from optical and SAR data into an integrated monitoring system will improve overall and individual land cover/use class accuracies. The study was conducted with three data sets for the Sleeping Bear Dunes test site in the northwestern part of Michigan's lower peninsula, including an October 1982 LANDSAT-TM scene, a June 1989 SPOT scene and C-, L- and P-Band radar data from the Jet Propulsion Laboratory AIRSAR. Reference data were derived from the Michigan Resource Information System (MIRIS) and available color infrared aerial photos. Classification and rectification of data sets were done using ERDAS Image Processing Programs. Classification algorithms included Maximum Likelihood, Mahalanobis Distance, Minimum Spectral Distance, ISODATA, Parallelepiped, and Sequential Cluster Analysis. Classified images were rectified as necessary so that all were at the same scale and oriented north-up. Results were analyzed with contingency tables and percent correctly classified (PCC) and Cohen's Kappa (CK) as accuracy indices using CSLANT and ImagePro programs developed for this study. Accuracy analyses were based upon a 1.4 by 6.5 km area with its long axis east-west. Reference data for this subscene total 55,770 15 by 15 m pixels with sixteen cover types, including seven level III forest classes, three level III urban classes, two level II range classes, two water classes, one wetland class and one agriculture class. An initial analysis was made without correcting the 1978 MIRIS reference data to the different dates of the TM, SPOT and SAR data sets. In this analysis, highest overall classification accuracy (PCC) was 87% with the TM data set, with both SPOT and C-Band SAR at 85%, a difference statistically significant at the 0.05 level. When the reference data were corrected for land cover change between 1978 and 1991, classification accuracy with the C-Band SAR data increased to 87%. Classification accuracy differed from sensor to sensor for individual land cover classes, Combining sensors into hypothetical multi-sensor systems resulted in higher accuracies than for any single sensor. Combining LANDSAT -TM and C-Band SAR yielded an overall classification accuracy (PCC) of 92%. The results of this study indicate that C-Band SAR data provide an acceptable substitute for LANDSAT-TM or SPOT data when land cover information is desired of areas where cloud cover obscures the terrain. Even better results can be obtained by integrating TM and C-Band SAR data into a multi-sensor system.

Classification of Korla fragrant pears using NIR hyperspectral imaging analysis

NASA Astrophysics Data System (ADS)

Rao, Xiuqin; Yang, Chun-Chieh; Ying, Yibin; Kim, Moon S.; Chao, Kuanglin

2012-05-01

Korla fragrant pears are small oval pears characterized by light green skin, crisp texture, and a pleasant perfume for which they are named. Anatomically, the calyx of a fragrant pear may be either persistent or deciduous; the deciduouscalyx fruits are considered more desirable due to taste and texture attributes. Chinese packaging standards require that packed cases of fragrant pears contain 5% or less of the persistent-calyx type. Near-infrared hyperspectral imaging was investigated as a potential means for automated sorting of pears according to calyx type. Hyperspectral images spanning the 992-1681 nm region were acquired using an EMCCD-based laboratory line-scan imaging system. Analysis of the hyperspectral images was performed to select wavebands useful for identifying persistent-calyx fruits and for identifying deciduous-calyx fruits. Based on the selected wavebands, an image-processing algorithm was developed that targets automated classification of Korla fragrant pears into the two categories for packaging purposes.

Supervised target detection in hyperspectral images using one-class Fukunaga-Koontz Transform

NASA Astrophysics Data System (ADS)

Binol, Hamidullah; Bal, Abdullah

2016-05-01

A novel hyperspectral target detection technique based on Fukunaga-Koontz transform (FKT) is presented. FKT offers significant properties for feature selection and ordering. However, it can only be used to solve multi-pattern classification problems. Target detection may be considered as a two-class classification problem, i.e., target versus background clutter. Nevertheless, background clutter typically contains different types of materials. That's why; target detection techniques are different than classification methods by way of modeling clutter. To avoid the modeling of the background clutter, we have improved one-class FKT (OC-FKT) for target detection. The statistical properties of target training samples are used to define tunnel-like boundary of the target class. Non-target samples are then created synthetically as to be outside of the boundary. Thus, only limited target samples become adequate for training of FKT. The hyperspectral image experiments confirm that the proposed OC-FKT technique provides an effective means for target detection.

Convolutional neural network-based classification system design with compressed wireless sensor network images.

PubMed

Ahn, Jungmo; Park, JaeYeon; Park, Donghwan; Paek, Jeongyeup; Ko, JeongGil

2018-01-01

With the introduction of various advanced deep learning algorithms, initiatives for image classification systems have transitioned over from traditional machine learning algorithms (e.g., SVM) to Convolutional Neural Networks (CNNs) using deep learning software tools. A prerequisite in applying CNN to real world applications is a system that collects meaningful and useful data. For such purposes, Wireless Image Sensor Networks (WISNs), that are capable of monitoring natural environment phenomena using tiny and low-power cameras on resource-limited embedded devices, can be considered as an effective means of data collection. However, with limited battery resources, sending high-resolution raw images to the backend server is a burdensome task that has direct impact on network lifetime. To address this problem, we propose an energy-efficient pre- and post- processing mechanism using image resizing and color quantization that can significantly reduce the amount of data transferred while maintaining the classification accuracy in the CNN at the backend server. We show that, if well designed, an image in its highly compressed form can be well-classified with a CNN model trained in advance using adequately compressed data. Our evaluation using a real image dataset shows that an embedded device can reduce the amount of transmitted data by ∼71% while maintaining a classification accuracy of ∼98%. Under the same conditions, this process naturally reduces energy consumption by ∼71% compared to a WISN that sends the original uncompressed images.

Multivariate decoding of brain images using ordinal regression.

PubMed

Doyle, O M; Ashburner, J; Zelaya, F O; Williams, S C R; Mehta, M A; Marquand, A F

2013-11-01

Neuroimaging data are increasingly being used to predict potential outcomes or groupings, such as clinical severity, drug dose response, and transitional illness states. In these examples, the variable (target) we want to predict is ordinal in nature. Conventional classification schemes assume that the targets are nominal and hence ignore their ranked nature, whereas parametric and/or non-parametric regression models enforce a metric notion of distance between classes. Here, we propose a novel, alternative multivariate approach that overcomes these limitations - whole brain probabilistic ordinal regression using a Gaussian process framework. We applied this technique to two data sets of pharmacological neuroimaging data from healthy volunteers. The first study was designed to investigate the effect of ketamine on brain activity and its subsequent modulation with two compounds - lamotrigine and risperidone. The second study investigates the effect of scopolamine on cerebral blood flow and its modulation using donepezil. We compared ordinal regression to multi-class classification schemes and metric regression. Considering the modulation of ketamine with lamotrigine, we found that ordinal regression significantly outperformed multi-class classification and metric regression in terms of accuracy and mean absolute error. However, for risperidone ordinal regression significantly outperformed metric regression but performed similarly to multi-class classification both in terms of accuracy and mean absolute error. For the scopolamine data set, ordinal regression was found to outperform both multi-class and metric regression techniques considering the regional cerebral blood flow in the anterior cingulate cortex. Ordinal regression was thus the only method that performed well in all cases. Our results indicate the potential of an ordinal regression approach for neuroimaging data while providing a fully probabilistic framework with elegant approaches for model selection. Copyright © 2013. Published by Elsevier Inc.

The evaluation of single-view and multi-view fusion 3D echocardiography using image-driven segmentation and tracking.

PubMed

Rajpoot, Kashif; Grau, Vicente; Noble, J Alison; Becher, Harald; Szmigielski, Cezary

2011-08-01

Real-time 3D echocardiography (RT3DE) promises a more objective and complete cardiac functional analysis by dynamic 3D image acquisition. Despite several efforts towards automation of left ventricle (LV) segmentation and tracking, these remain challenging research problems due to the poor-quality nature of acquired images usually containing missing anatomical information, speckle noise, and limited field-of-view (FOV). Recently, multi-view fusion 3D echocardiography has been introduced as acquiring multiple conventional single-view RT3DE images with small probe movements and fusing them together after alignment. This concept of multi-view fusion helps to improve image quality and anatomical information and extends the FOV. We now take this work further by comparing single-view and multi-view fused images in a systematic study. In order to better illustrate the differences, this work evaluates image quality and information content of single-view and multi-view fused images using image-driven LV endocardial segmentation and tracking. The image-driven methods were utilized to fully exploit image quality and anatomical information present in the image, thus purposely not including any high-level constraints like prior shape or motion knowledge in the analysis approaches. Experiments show that multi-view fused images are better suited for LV segmentation and tracking, while relatively more failures and errors were observed on single-view images. Copyright © 2011 Elsevier B.V. All rights reserved.

A Multi-Label Classification Approach for Coding Cancer Information Service Chat Transcripts

PubMed Central

Rios, Anthony; Vanderpool, Robin; Shaw, Pam

2017-01-01

National Cancer Institute's (NCI) Cancer Information Service (CIS) offers online instant messaging based information service called LiveHelp to patients, family members, friends, and other cancer information consumers. A cancer information specialist (IS) ‘chats’ with a consumer and provides information on a variety of topics including clinical trials. After a LiveHelp chat session is finished, the IS codes about 20 different elements of metadata about the session in electronic contact record forms (ECRF), which are to be later used for quality control and reporting. Besides straightforward elements like age and gender, more specific elements to be coded include the purpose of contact, the subjects of interaction, and the different responses provided to the consumer, the latter two often taking on multiple values. As such, ECRF coding is a time consuming task and automating this process could help ISs to focus more on their primary goal of helping consumers with valuable cancer related information. As a first attempt in this task, we explored multi-label and multi-class text classification approaches to code the purpose, subjects of interaction, and the responses provided based on the chat transcripts. With a sample dataset of about 673 transcripts, we achieved example-based F-scores of 0.67 (for subjects) and 0.58 (responses). We also achieved label-based micro F-scores of 0.65 (for subjects), 0.62 (for responses), and 0.61 (for purpose). To our knowledge this is the first attempt in automatic coding of Live-Help transcripts and our initial results on the smaller corpus indicate promising future directions in this task. PMID:28736775

SENTINEL-1 and SENTINEL-2 Data Fusion for Wetlands Mapping: Balikdami, Turkey

NASA Astrophysics Data System (ADS)

Kaplan, G.; Avdan, U.

2018-04-01

Wetlands provide a number of environmental and socio-economic benefits such as their ability to store floodwaters and improve water quality, providing habitats for wildlife and supporting biodiversity, as well as aesthetic values. Remote sensing technology has proven to be a useful and frequent application in monitoring and mapping wetlands. Combining optical and microwave satellite data can help with mapping and monitoring the biophysical characteristics of wetlands and wetlands` vegetation. Also, fusing radar and optical remote sensing data can increase the wetland classification accuracy. In this paper, data from the fine spatial resolution optical satellite, Sentinel-2 and the Synthetic Aperture Radar Satellite, Sentinel-1, were fused for mapping wetlands. Both Sentinel-1 and Sentinel-2 images were pre-processed. After the pre-processing, vegetation indices were calculated using the Sentinel-2 bands and the results were included in the fusion data set. For the classification of the fused data, three different classification approaches were used and compared. The results showed significant improvement in the wetland classification using both multispectral and microwave data. Also, the presence of the red edge bands and the vegetation indices used in the data set showed significant improvement in the discrimination between wetlands and other vegetated areas. The statistical results of the fusion of the optical and radar data showed high wetland mapping accuracy, showing an overall classification accuracy of approximately 90 % in the object-based classification method. For future research, we recommend multi-temporal image use, terrain data collection, as well as a comparison of the used method with the traditional image fusion techniques.

Automatic Cloud Detection from Multi-Temporal Satellite Images: Towards the Use of PLÉIADES Time Series

NASA Astrophysics Data System (ADS)

Champion, N.

2012-08-01

Contrary to aerial images, satellite images are often affected by the presence of clouds. Identifying and removing these clouds is one of the primary steps to perform when processing satellite images, as they may alter subsequent procedures such as atmospheric corrections, DSM production or land cover classification. The main goal of this paper is to present the cloud detection approach, developed at the French Mapping agency. Our approach is based on the availability of multi-temporal satellite images (i.e. time series that generally contain between 5 and 10 images) and is based on a region-growing procedure. Seeds (corresponding to clouds) are firstly extracted through a pixel-to-pixel comparison between the images contained in time series (the presence of a cloud is here assumed to be related to a high variation of reflectance between two images). Clouds are then delineated finely using a dedicated region-growing algorithm. The method, originally designed for panchromatic SPOT5-HRS images, is tested in this paper using time series with 9 multi-temporal satellite images. Our preliminary experiments show the good performances of our method. In a near future, the method will be applied to Pléiades images, acquired during the in-flight commissioning phase of the satellite (launched at the end of 2011). In that context, this is a particular goal of this paper to show to which extent and in which way our method can be adapted to this kind of imagery.

Automatic multi-label annotation of abdominal CT images using CBIR

NASA Astrophysics Data System (ADS)

Xue, Zhiyun; Antani, Sameer; Long, L. Rodney; Thoma, George R.

2017-03-01

We present a technique to annotate multiple organs shown in 2-D abdominal/pelvic CT images using CBIR. This annotation task is motivated by our research interests in visual question-answering (VQA). We aim to apply results from this effort in Open-iSM, a multimodal biomedical search engine developed by the National Library of Medicine (NLM). Understanding visual content of biomedical images is a necessary step for VQA. Though sufficient annotational information about an image may be available in related textual metadata, not all may be useful as descriptive tags, particularly for anatomy on the image. In this paper, we develop and evaluate a multi-label image annotation method using CBIR. We evaluate our method on two 2-D CT image datasets we generated from 3-D volumetric data obtained from a multi-organ segmentation challenge hosted in MICCAI 2015. Shape and spatial layout information is used to encode visual characteristics of the anatomy. We adapt a weighted voting scheme to assign multiple labels to the query image by combining the labels of the images identified as similar by the method. Key parameters that may affect the annotation performance, such as the number of images used in the label voting and the threshold for excluding labels that have low weights, are studied. The method proposes a coarse-to-fine retrieval strategy which integrates the classification with the nearest-neighbor search. Results from our evaluation (using the MICCAI CT image datasets as well as figures from Open-i) are presented.

Fusion of Modis and Palsar Principal Component Images Through Curvelet Transform for Land Cover Classification

NASA Astrophysics Data System (ADS)

Singh, Dharmendra; Kumar, Harish

Earth observation satellites provide data that covers different portions of the electromagnetic spectrum at different spatial and spectral resolutions. The increasing availability of information products generated from satellite images are extending the ability to understand the patterns and dynamics of the earth resource systems at all scales of inquiry. In which one of the most important application is the generation of land cover classification from satellite images for understanding the actual status of various land cover classes. The prospect for the use of satel-lite images in land cover classification is an extremely promising one. The quality of satellite images available for land-use mapping is improving rapidly by development of advanced sensor technology. Particularly noteworthy in this regard is the improved spatial and spectral reso-lution of the images captured by new satellite sensors like MODIS, ASTER, Landsat 7, and SPOT 5. For the full exploitation of increasingly sophisticated multisource data, fusion tech-niques are being developed. Fused images may enhance the interpretation capabilities. The images used for fusion have different temporal, and spatial resolution. Therefore, the fused image provides a more complete view of the observed objects. It is one of the main aim of image fusion to integrate different data in order to obtain more information that can be de-rived from each of the single sensor data alone. A good example of this is the fusion of images acquired by different sensors having a different spatial resolution and of different spectral res-olution. Researchers are applying the fusion technique since from three decades and propose various useful methods and techniques. The importance of high-quality synthesis of spectral information is well suited and implemented for land cover classification. More recently, an underlying multiresolution analysis employing the discrete wavelet transform has been used in image fusion. It was found that multisensor image fusion is a tradeoff between the spectral information from a low resolution multi-spectral images and the spatial information from a high resolution multi-spectral images. With the wavelet transform based fusion method, it is easy to control this tradeoff. A new transform, the curvelet transform was used in recent years by Starck. A ridgelet transform is applied to square blocks of detail frames of undecimated wavelet decomposition, consequently the curvelet transform is obtained. Since the ridgelet transform possesses basis functions matching directional straight lines therefore, the curvelet transform is capable of representing piecewise linear contours on multiple scales through few significant coefficients. This property leads to a better separation between geometric details and background noise, which may be easily reduced by thresholding curvelet coefficients before they are used for fusion. The Terra and Aqua Moderate Resolution Imaging Spectroradiometer (MODIS) instrument provides high radiometric sensitivity (12 bit) in 36 spectral bands ranging in wavelength from 0.4 m to 14.4 m and also it is freely available. Two bands are imaged at a nominal resolution of 250 m at nadir, with five bands at 500 m, and the remaining 29 bands at 1 km. In this paper, the band 1 of spatial resolution 250 m and bandwidth 620-670 nm, and band 2, of spatial resolution of 250m and bandwidth 842-876 nm is considered as these bands has special features to identify the agriculture and other land covers. In January 2006, the Advanced Land Observing Satellite (ALOS) was successfully launched by the Japan Aerospace Exploration Agency (JAXA). The Phased Arraytype L-band SAR (PALSAR) sensor onboard the satellite acquires SAR imagery at a wavelength of 23.5 cm (frequency 1.27 GHz) with capabilities of multimode and multipolarization observation. PALSAR can operate in several modes: the fine-beam single (FBS) polarization mode (HH), fine-beam dual (FBD) polariza-tion mode (HH/HV or VV/VH), polarimetric (PLR) mode (HH/HV/VH/VV), and ScanSAR (WB) mode (HH/VV) [15]. These makes PALSAR imagery very attractive for spatially and temporally consistent monitoring system. The Overview of Principal Component Analysis is that the most of the information within all the bands can be compressed into a much smaller number of bands with little loss of information. It allows us to extract the low-dimensional subspaces that capture the main linear correlation among the high-dimensional image data. This facilitates viewing the explained variance or signal in the available imagery, allowing both gross and more subtle features in the imagery to be seen. In this paper we have explored the fusion technique for enhancing the land cover classification of low resolution satellite data espe-cially freely available satellite data. For this purpose, we have considered to fuse the PALSAR principal component data with MODIS principal component data. Initially, the MODIS band 1 and band 2 is considered, its principal component is computed. Similarly the PALSAR HH, HV and VV polarized data are considered, and there principal component is also computed. con-sequently, the PALSAR principal component image is fused with MODIS principal component image. The aim of this paper is to analyze the effect of classification accuracy on major type of land cover types like agriculture, water and urban bodies with fusion of PALSAR data to MODIS data. Curvelet transformation has been applied for fusion of these two satellite images and Minimum Distance classification technique has been applied for the resultant fused image. It is qualitatively and visually observed that the overall classification accuracy of MODIS image after fusion is enhanced. This type of fusion technique may be quite helpful in near future to use freely available satellite data to develop monitoring system for different land cover classes on the earth.

a Semi-Empirical Topographic Correction Model for Multi-Source Satellite Images

NASA Astrophysics Data System (ADS)

Xiao, Sa; Tian, Xinpeng; Liu, Qiang; Wen, Jianguang; Ma, Yushuang; Song, Zhenwei

2018-04-01

Topographic correction of surface reflectance in rugged terrain areas is the prerequisite for the quantitative application of remote sensing in mountainous areas. Physics-based radiative transfer model can be applied to correct the topographic effect and accurately retrieve the reflectance of the slope surface from high quality satellite image such as Landsat8 OLI. However, as more and more images data available from various of sensors, some times we can not get the accurate sensor calibration parameters and atmosphere conditions which are needed in the physics-based topographic correction model. This paper proposed a semi-empirical atmosphere and topographic corrction model for muti-source satellite images without accurate calibration parameters.Based on this model we can get the topographic corrected surface reflectance from DN data, and we tested and verified this model with image data from Chinese satellite HJ and GF. The result shows that the correlation factor was reduced almost 85 % for near infrared bands and the classification overall accuracy of classification increased 14 % after correction for HJ. The reflectance difference of slope face the sun and face away the sun have reduced after correction.

Discriminating plant species across California's diverse ecosystems using airborne VSWIR and TIR imagery

NASA Astrophysics Data System (ADS)

Meerdink, S.; Roberts, D. A.; Roth, K. L.

2015-12-01

Accurate knowledge of the spatial distribution of plant species is required for many research and management agendas that track ecosystem health. Because of this, there is continuous development of research focused on remotely-sensed species classifications for many diverse ecosystems. While plant species have been mapped using airborne imaging spectroscopy, the geographic extent has been limited due to data availability and spectrally similar species continue to be difficult to separate. The proposed Hyperspectral Infrared Imager (HyspIRI) space-borne mission, which includes a visible near infrared/shortwave infrared (VSWIR) imaging spectrometer and thermal infrared (TIR) multi-spectral imager, would present an opportunity to improve species discrimination over a much broader scale. Here we evaluate: 1) the capability of VSWIR and/or TIR spectra to discriminate plant species; 2) the accuracy of species classifications within an ecosystem; and 3) the potential for discriminating among species across a range of ecosystems. Simulated HyspIRI imagery was acquired in spring/summer of 2013 spanning from Santa Barbara to Bakersfield, CA with the Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) and the MODIS/ASTER Airborne Simulator (MASTER) instruments. Three spectral libraries were created from these images: AVIRIS (224 bands from 0.4 - 2.5 µm), MASTER (8 bands from 7.5 - 12 µm), and AVIRIS + MASTER. We used canonical discriminant analysis (CDA) as a dimension reduction technique and then classified plant species using linear discriminant analysis (LDA). Our results show the inclusion of TIR spectra improved species discrimination, but only for plant species with emissivities departing from that of a gray body. Ecosystems with species that have high spectral contrast had higher classification accuracies. Mapping plant species across all ecosystems resulted in a classification with lower accuracies than a single ecosystem due to the complex nature of incorporating more plant species.

A Multi-Modal Face Recognition Method Using Complete Local Derivative Patterns and Depth Maps

PubMed Central

Yin, Shouyi; Dai, Xu; Ouyang, Peng; Liu, Leibo; Wei, Shaojun

2014-01-01

In this paper, we propose a multi-modal 2D + 3D face recognition method for a smart city application based on a Wireless Sensor Network (WSN) and various kinds of sensors. Depth maps are exploited for the 3D face representation. As for feature extraction, we propose a new feature called Complete Local Derivative Pattern (CLDP). It adopts the idea of layering and has four layers. In the whole system, we apply CLDP separately on Gabor features extracted from a 2D image and depth map. Then, we obtain two features: CLDP-Gabor and CLDP-Depth. The two features weighted by the corresponding coefficients are combined together in the decision level to compute the total classification distance. At last, the probe face is assigned the identity with the smallest classification distance. Extensive experiments are conducted on three different databases. The results demonstrate the robustness and superiority of the new approach. The experimental results also prove that the proposed multi-modal 2D + 3D method is superior to other multi-modal ones and CLDP performs better than other Local Binary Pattern (LBP) based features. PMID:25333290

Age and gender estimation using Region-SIFT and multi-layered SVM

NASA Astrophysics Data System (ADS)

Kim, Hyunduk; Lee, Sang-Heon; Sohn, Myoung-Kyu; Hwang, Byunghun

2018-04-01

In this paper, we propose an age and gender estimation framework using the region-SIFT feature and multi-layered SVM classifier. The suggested framework entails three processes. The first step is landmark based face alignment. The second step is the feature extraction step. In this step, we introduce the region-SIFT feature extraction method based on facial landmarks. First, we define sub-regions of the face. We then extract SIFT features from each sub-region. In order to reduce the dimensions of features we employ a Principal Component Analysis (PCA) and a Linear Discriminant Analysis (LDA). Finally, we classify age and gender using a multi-layered Support Vector Machines (SVM) for efficient classification. Rather than performing gender estimation and age estimation independently, the use of the multi-layered SVM can improve the classification rate by constructing a classifier that estimate the age according to gender. Moreover, we collect a dataset of face images, called by DGIST_C, from the internet. A performance evaluation of proposed method was performed with the FERET database, CACD database, and DGIST_C database. The experimental results demonstrate that the proposed approach classifies age and performs gender estimation very efficiently and accurately.

Optimization of Adaboost Algorithm for Sonar Target Detection in a Multi-Stage ATR System

NASA Technical Reports Server (NTRS)

Lin, Tsung Han (Hank)

2011-01-01

JPL has developed a multi-stage Automated Target Recognition (ATR) system to locate objects in images. First, input images are preprocessed and sent to a Grayscale Optical Correlator (GOC) filter to identify possible regions-of-interest (ROIs). Second, feature extraction operations are performed using Texton filters and Principal Component Analysis (PCA). Finally, the features are fed to a classifier, to identify ROIs that contain the targets. Previous work used the Feed-forward Back-propagation Neural Network for classification. In this project we investigate a version of Adaboost as a classifier for comparison. The version we used is known as GentleBoost. We used the boosted decision tree as the weak classifier. We have tested our ATR system against real-world sonar images using the Adaboost approach. Results indicate an improvement in performance over a single Neural Network design.

Secure distribution for high resolution remote sensing images

NASA Astrophysics Data System (ADS)

Liu, Jin; Sun, Jing; Xu, Zheng Q.

2010-09-01

The use of remote sensing images collected by space platforms is becoming more and more widespread. The increasing value of space data and its use in critical scenarios call for adoption of proper security measures to protect these data against unauthorized access and fraudulent use. In this paper, based on the characteristics of remote sensing image data and application requirements on secure distribution, a secure distribution method is proposed, including users and regions classification, hierarchical control and keys generation, and multi-level encryption based on regions. The combination of the three parts can make that the same remote sensing images after multi-level encryption processing are distributed to different permission users through multicast, but different permission users can obtain different degree information after decryption through their own decryption keys. It well meets user access control and security needs in the process of high resolution remote sensing image distribution. The experimental results prove the effectiveness of the proposed method which is suitable for practical use in the secure transmission of remote sensing images including confidential information over internet.

Efficiency analysis for 3D filtering of multichannel images

NASA Astrophysics Data System (ADS)

Kozhemiakin, Ruslan A.; Rubel, Oleksii; Abramov, Sergey K.; Lukin, Vladimir V.; Vozel, Benoit; Chehdi, Kacem

2016-10-01

Modern remote sensing systems basically acquire images that are multichannel (dual- or multi-polarization, multi- and hyperspectral) where noise, usually with different characteristics, is present in all components. If noise is intensive, it is desirable to remove (suppress) it before applying methods of image classification, interpreting, and information extraction. This can be done using one of two approaches - by component-wise or by vectorial (3D) filtering. The second approach has shown itself to have higher efficiency if there is essential correlation between multichannel image components as this often happens for multichannel remote sensing data of different origin. Within the class of 3D filtering techniques, there are many possibilities and variations. In this paper, we consider filtering based on discrete cosine transform (DCT) and pay attention to two aspects of processing. First, we study in detail what changes in DCT coefficient statistics take place for 3D denoising compared to component-wise processing. Second, we analyze how selection of component images united into 3D data array influences efficiency of filtering and can the observed tendencies be exploited in processing of images with rather large number of channels.

Multi-class segmentation of neuronal electron microscopy images using deep learning

NASA Astrophysics Data System (ADS)

Khobragade, Nivedita; Agarwal, Chirag

2018-03-01

Study of connectivity of neural circuits is an essential step towards a better understanding of functioning of the nervous system. With the recent improvement in imaging techniques, high-resolution and high-volume images are being generated requiring automated segmentation techniques. We present a pixel-wise classification method based on Bayesian SegNet architecture. We carried out multi-class segmentation on serial section Transmission Electron Microscopy (ssTEM) images of Drosophila third instar larva ventral nerve cord, labeling the four classes of neuron membranes, neuron intracellular space, mitochondria and glia / extracellular space. Bayesian SegNet was trained using 256 ssTEM images of 256 x 256 pixels and tested on 64 different ssTEM images of the same size, from the same serial stack. Due to high class imbalance, we used a class-balanced version of Bayesian SegNet by re-weighting each class based on their relative frequency. We achieved an overall accuracy of 93% and a mean class accuracy of 88% for pixel-wise segmentation using this encoder-decoder approach. On evaluating the segmentation results using similarity metrics like SSIM and Dice Coefficient, we obtained scores of 0.994 and 0.886 respectively. Additionally, we used the network trained using the 256 ssTEM images of Drosophila third instar larva for multi-class labeling of ISBI 2012 challenge ssTEM dataset.

CANcer-specific Evaluation System (CANES): a high-accuracy platform, for preclinical single/multi-biomarker discovery

PubMed Central

Kwon, Min-Seok; Nam, Seungyoon; Lee, Sungyoung; Ahn, Young Zoo; Chang, Hae Ryung; Kim, Yon Hui; Park, Taesung

2017-01-01

The recent creation of enormous, cancer-related “Big Data” public depositories represents a powerful means for understanding tumorigenesis. However, a consistently accurate system for clinically evaluating single/multi-biomarkers remains lacking, and it has been asserted that oft-failed clinical advancement of biomarkers occurs within the very early stages of biomarker assessment. To address these challenges, we developed a clinically testable, web-based tool, CANcer-specific single/multi-biomarker Evaluation System (CANES), to evaluate biomarker effectiveness, across 2,134 whole transcriptome datasets, from 94,147 biological samples (from 18 tumor types). For user-provided single/multi-biomarkers, CANES evaluates the performance of single/multi-biomarker candidates, based on four classification methods, support vector machine, random forest, neural networks, and classification and regression trees. In addition, CANES offers several advantages over earlier analysis tools, including: 1) survival analysis; 2) evaluation of mature miRNAs as markers for user-defined diagnostic or prognostic purposes; and 3) provision of a “pan-cancer” summary view, based on each single marker. We believe that such “landscape” evaluation of single/multi-biomarkers, for diagnostic therapeutic/prognostic decision-making, will be highly valuable for the discovery and “repurposing” of existing biomarkers (and their specific targeted therapies), leading to improved patient therapeutic stratification, a key component of targeted therapy success for the avoidance of therapy resistance. PMID:29050243

Multi-echo GRE imaging of knee cartilage.

PubMed

Yuen, Joanna; Hung, Jachin; Wiggermann, Vanessa; Robinson, Simon D; McCormack, Robert; d'Entremont, Agnes G; Rauscher, Alexander

2017-05-01

To visualize healthy and abnormal articular cartilage, we investigated the potential of using the 3D multi-echo gradient echo (GRE) signal's magnitude and frequency and maps of T2* relaxation. After optimizing imaging parameters in five healthy volunteers, 3D multi-echo GRE magnetic resonance (MR) images were acquired at 3T in four patients with chondral damage prior to their arthroscopic surgery. Average magnitude and frequency information was extracted from the GRE images, and T2* maps were generated. Cartilage abnormalities were confirmed after arthroscopy and were graded using the Outerbridge classification scheme. Regions of interest were identified on average magnitude GRE images and compared to arthroscopy. All four patients presented with regions of Outerbridge Grade I and II cartilage damage on arthroscopy. One patient had Grade III changes. Grade I, II, and III changes were detectable on average magnitude and T2* maps, while Grade II and higher changes were also observable on MR frequency maps. For average magnitude images of healthy volunteers, the signal-to-noise ratio of the magnitude image averaged over three echoes was 4.26 ± 0.32, 12.26 ± 1.09, 14.31 ± 1.93, and 13.36 ± 1.13 in bone, femoral, tibial, and patellar cartilage, respectively. This proof-of-principle study demonstrates the feasibility of using different imaging contrasts from the 3D multi-echo GRE scan to visualize abnormalities of the articular cartilage. © 2016 International Society for Magnetic Resonance in Medicine Level of Evidence: 1 J. MAGN. RESON. IMAGING 2017;45:1502-1513. © 2016 International Society for Magnetic Resonance in Medicine.

Scale invariant texture descriptors for classifying celiac disease

PubMed Central

Hegenbart, Sebastian; Uhl, Andreas; Vécsei, Andreas; Wimmer, Georg

2013-01-01

Scale invariant texture recognition methods are applied for the computer assisted diagnosis of celiac disease. In particular, emphasis is given to techniques enhancing the scale invariance of multi-scale and multi-orientation wavelet transforms and methods based on fractal analysis. After fine-tuning to specific properties of our celiac disease imagery database, which consists of endoscopic images of the duodenum, some scale invariant (and often even viewpoint invariant) methods provide classification results improving the current state of the art. However, not each of the investigated scale invariant methods is applicable successfully to our dataset. Therefore, the scale invariance of the employed approaches is explicitly assessed and it is found that many of the analyzed methods are not as scale invariant as they theoretically should be. Results imply that scale invariance is not a key-feature required for successful classification of our celiac disease dataset. PMID:23481171

Extended output phasor representation of multi-spectral fluorescence lifetime imaging microscopy

PubMed Central

Campos-Delgado, Daniel U.; Navarro, O. Gutiérrez; Arce-Santana, E. R.; Jo, Javier A.

2015-01-01

In this paper, we investigate novel low-dimensional and model-free representations for multi-spectral fluorescence lifetime imaging microscopy (m-FLIM) data. We depart from the classical definition of the phasor in the complex plane to propose the extended output phasor (EOP) and extended phasor (EP) for multi-spectral information. The frequency domain properties of the EOP and EP are analytically studied based on a multiexponential model for the impulse response of the imaged tissue. For practical implementations, the EOP is more appealing since there is no need to perform deconvolution of the instrument response from the measured m-FLIM data, as in the case of EP. Our synthetic and experimental evaluations with m-FLIM datasets of human coronary atherosclerotic plaques show that low frequency indexes have to be employed for a distinctive representation of the EOP and EP, and to reduce noise distortion. The tissue classification of the m-FLIM datasets by EOP and EP also improves with low frequency indexes, and does not present significant differences by using either phasor. PMID:26114031

Efficient HIK SVM learning for image classification.

PubMed

Wu, Jianxin

2012-10-01

Histograms are used in almost every aspect of image processing and computer vision, from visual descriptors to image representations. Histogram intersection kernel (HIK) and support vector machine (SVM) classifiers are shown to be very effective in dealing with histograms. This paper presents contributions concerning HIK SVM for image classification. First, we propose intersection coordinate descent (ICD), a deterministic and scalable HIK SVM solver. ICD is much faster than, and has similar accuracies to, general purpose SVM solvers and other fast HIK SVM training methods. We also extend ICD to the efficient training of a broader family of kernels. Second, we show an important empirical observation that ICD is not sensitive to the C parameter in SVM, and we provide some theoretical analyses to explain this observation. ICD achieves high accuracies in many problems, using its default parameters. This is an attractive property for practitioners, because many image processing tasks are too large to choose SVM parameters using cross-validation.

Semi-automated landform classification for hazard mapping of soil liquefaction by earthquake

NASA Astrophysics Data System (ADS)

Nakano, Takayuki

2018-05-01

Soil liquefaction damages were caused by huge earthquake in Japan, and the similar damages are concerned in near future huge earthquake. On the other hand, a preparation of soil liquefaction risk map (soil liquefaction hazard map) is impeded by the difficulty of evaluation of soil liquefaction risk. Generally, relative soil liquefaction risk should be able to be evaluated from landform classification data by using experimental rule based on the relationship between extent of soil liquefaction damage and landform classification items associated with past earthquake. Therefore, I rearranged the relationship between landform classification items and soil liquefaction risk intelligibly in order to enable the evaluation of soil liquefaction risk based on landform classification data appropriately and efficiently. And I developed a new method of generating landform classification data of 50-m grid size from existing landform classification data of 250-m grid size by using digital elevation model (DEM) data and multi-band satellite image data in order to evaluate soil liquefaction risk in detail spatially. It is expected that the products of this study contribute to efficient producing of soil liquefaction hazard map by local government.

High-Resolution 3T MR Imaging of the Triangular Fibrocartilage Complex

PubMed Central

von Borstel, Donald; Wang, Michael; Small, Kirstin; Nozaki, Taiki; Yoshioka, Hiroshi

2017-01-01

This study is intended as a review of 3Tesla (T) magnetic resonance (MR) imaging of the triangular fibrocartilage complex (TFCC). The recent advances in MR imaging, which includes high field strength magnets, multi-channel coils, and isotropic 3-dimensional (3D) sequences have enabled the visualization of precise TFCC anatomy with high spatial and contrast resolution. In addition to the routine wrist protocol, there are specific techniques used to optimize 3T imaging of the wrist; including driven equilibrium sequence (DRIVE), parallel imaging, and 3D imaging. The coil choice for 3T imaging of the wrist depends on a number of variables, and the proper coil design selection is critical for high-resolution wrist imaging with high signal and contrast-to-noise ratio. The TFCC is a complex structure and is composed of the articular disc (disc proper), the triangular ligament, the dorsal and volar radioulnar ligaments, the meniscus homologue, the ulnar collateral ligament (UCL), the extensor carpi ulnaris (ECU) tendon sheath, and the ulnolunate and ulnotriquetral ligaments. The Palmer classification categorizes TFCC lesions as traumatic (type 1) or degenerative (type 2). In this review article, we present clinical high-resolution MR images of normal TFCC anatomy and TFCC injuries with this classification system. PMID:27535592

High-Resolution 3T MR Imaging of the Triangular Fibrocartilage Complex.

PubMed

von Borstel, Donald; Wang, Michael; Small, Kirstin; Nozaki, Taiki; Yoshioka, Hiroshi

2017-01-10

This study is intended as a review of 3Tesla (T) magnetic resonance (MR) imaging of the triangular fibrocartilage complex (TFCC). The recent advances in MR imaging, which includes high field strength magnets, multi-channel coils, and isotropic 3-dimensional (3D) sequences have enabled the visualization of precise TFCC anatomy with high spatial and contrast resolution. In addition to the routine wrist protocol, there are specific techniques used to optimize 3T imaging of the wrist; including driven equilibrium sequence (DRIVE), parallel imaging, and 3D imaging. The coil choice for 3T imaging of the wrist depends on a number of variables, and the proper coil design selection is critical for high-resolution wrist imaging with high signal and contrast-to-noise ratio. The TFCC is a complex structure and is composed of the articular disc (disc proper), the triangular ligament, the dorsal and volar radioulnar ligaments, the meniscus homologue, the ulnar collateral ligament (UCL), the extensor carpi ulnaris (ECU) tendon sheath, and the ulnolunate and ulnotriquetral ligaments. The Palmer classification categorizes TFCC lesions as traumatic (type 1) or degenerative (type 2). In this review article, we present clinical high-resolution MR images of normal TFCC anatomy and TFCC injuries with this classification system.

Locality constrained joint dynamic sparse representation for local matching based face recognition.

PubMed

Wang, Jianzhong; Yi, Yugen; Zhou, Wei; Shi, Yanjiao; Qi, Miao; Zhang, Ming; Zhang, Baoxue; Kong, Jun

2014-01-01

Recently, Sparse Representation-based Classification (SRC) has attracted a lot of attention for its applications to various tasks, especially in biometric techniques such as face recognition. However, factors such as lighting, expression, pose and disguise variations in face images will decrease the performances of SRC and most other face recognition techniques. In order to overcome these limitations, we propose a robust face recognition method named Locality Constrained Joint Dynamic Sparse Representation-based Classification (LCJDSRC) in this paper. In our method, a face image is first partitioned into several smaller sub-images. Then, these sub-images are sparsely represented using the proposed locality constrained joint dynamic sparse representation algorithm. Finally, the representation results for all sub-images are aggregated to obtain the final recognition result. Compared with other algorithms which process each sub-image of a face image independently, the proposed algorithm regards the local matching-based face recognition as a multi-task learning problem. Thus, the latent relationships among the sub-images from the same face image are taken into account. Meanwhile, the locality information of the data is also considered in our algorithm. We evaluate our algorithm by comparing it with other state-of-the-art approaches. Extensive experiments on four benchmark face databases (ORL, Extended YaleB, AR and LFW) demonstrate the effectiveness of LCJDSRC.

Dynamic clustering detection through multi-valued descriptors of dermoscopic images.

PubMed

Cozza, Valentina; Guarracino, Maria Rosario; Maddalena, Lucia; Baroni, Adone

2011-09-10

This paper introduces a dynamic clustering methodology based on multi-valued descriptors of dermoscopic images. The main idea is to support medical diagnosis to decide if pigmented skin lesions belonging to an uncertain set are nearer to malignant melanoma or to benign nevi. Melanoma is the most deadly skin cancer, and early diagnosis is a current challenge for clinicians. Most data analysis algorithms for skin lesions discrimination focus on segmentation and extraction of features of categorical or numerical type. As an alternative approach, this paper introduces two new concepts: first, it considers multi-valued data that scalar variables not only describe but also intervals or histogram variables; second, it introduces a dynamic clustering method based on Wasserstein distance to compare multi-valued data. The overall strategy of analysis can be summarized into the following steps: first, a segmentation of dermoscopic images allows to identify a set of multi-valued descriptors; second, we performed a discriminant analysis on a set of images where there is an a priori classification so that it is possible to detect which features discriminate the benign and malignant lesions; and third, we performed the proposed dynamic clustering method on the uncertain cases, which need to be associated to one of the two previously mentioned groups. Results based on clinical data show that the grading of specific descriptors associated to dermoscopic characteristics provides a novel way to characterize uncertain lesions that can help the dermatologist's diagnosis. Copyright © 2011 John Wiley & Sons, Ltd.

Adaptive coding of MSS imagery. [Multi Spectral band Scanners

NASA Technical Reports Server (NTRS)

Habibi, A.; Samulon, A. S.; Fultz, G. L.; Lumb, D.

1977-01-01

A number of adaptive data compression techniques are considered for reducing the bandwidth of multispectral data. They include adaptive transform coding, adaptive DPCM, adaptive cluster coding, and a hybrid method. The techniques are simulated and their performance in compressing the bandwidth of Landsat multispectral images is evaluated and compared using signal-to-noise ratio and classification consistency as fidelity criteria.

Binary image classification

NASA Technical Reports Server (NTRS)

Morris, Carl N.

1987-01-01

Motivated by the LANDSAT problem of estimating the probability of crop or geological types based on multi-channel satellite imagery data, Morris and Kostal (1983), Hill, Hinkley, Kostal, and Morris (1984), and Morris, Hinkley, and Johnston (1985) developed an empirical Bayes approach to this problem. Here, researchers return to those developments, making certain improvements and extensions, but restricting attention to the binary case of only two attributes.

Automated diagnosis of Alzheimer's disease with multi-atlas based whole brain segmentations

NASA Astrophysics Data System (ADS)

Luo, Yuan; Tang, Xiaoying

2017-03-01

Voxel-based analysis is widely used in quantitative analysis of structural brain magnetic resonance imaging (MRI) and automated disease detection, such as Alzheimer's disease (AD). However, noise at the voxel level may cause low sensitivity to AD-induced structural abnormalities. This can be addressed with the use of a whole brain structural segmentation approach which greatly reduces the dimension of features (the number of voxels). In this paper, we propose an automatic AD diagnosis system that combines such whole brain segmen- tations with advanced machine learning methods. We used a multi-atlas segmentation technique to parcellate T1-weighted images into 54 distinct brain regions and extract their structural volumes to serve as the features for principal-component-analysis-based dimension reduction and support-vector-machine-based classification. The relationship between the number of retained principal components (PCs) and the diagnosis accuracy was systematically evaluated, in a leave-one-out fashion, based on 28 AD subjects and 23 age-matched healthy subjects. Our approach yielded pretty good classification results with 96.08% overall accuracy being achieved using the three foremost PCs. In addition, our approach yielded 96.43% specificity, 100% sensitivity, and 0.9891 area under the receiver operating characteristic curve.

Enhancement of low visibility aerial images using histogram truncation and an explicit Retinex representation for balancing contrast and color consistency

NASA Astrophysics Data System (ADS)

Liu, Changjiang; Cheng, Irene; Zhang, Yi; Basu, Anup

2017-06-01

This paper presents an improved multi-scale Retinex (MSR) based enhancement for ariel images under low visibility. For traditional multi-scale Retinex, three scales are commonly employed, which limits its application scenarios. We extend our research to a general purpose enhanced method, and design an MSR with more than three scales. Based on the mathematical analysis and deductions, an explicit multi-scale representation is proposed that balances image contrast and color consistency. In addition, a histogram truncation technique is introduced as a post-processing strategy to remap the multi-scale Retinex output to the dynamic range of the display. Analysis of experimental results and comparisons with existing algorithms demonstrate the effectiveness and generality of the proposed method. Results on image quality assessment proves the accuracy of the proposed method with respect to both objective and subjective criteria.

Diagnosis of breast masses from dynamic contrast-enhanced and diffusion-weighted MR: a machine learning approach.

PubMed

Cai, Hongmin; Peng, Yanxia; Ou, Caiwen; Chen, Minsheng; Li, Li

2014-01-01

Dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) is increasingly used for breast cancer diagnosis as supplementary to conventional imaging techniques. Combining of diffusion-weighted imaging (DWI) of morphology and kinetic features from DCE-MRI to improve the discrimination power of malignant from benign breast masses is rarely reported. The study comprised of 234 female patients with 85 benign and 149 malignant lesions. Four distinct groups of features, coupling with pathological tests, were estimated to comprehensively characterize the pictorial properties of each lesion, which was obtained by a semi-automated segmentation method. Classical machine learning scheme including feature subset selection and various classification schemes were employed to build prognostic model, which served as a foundation for evaluating the combined effects of the multi-sided features for predicting of the types of lesions. Various measurements including cross validation and receiver operating characteristics were used to quantify the diagnostic performances of each feature as well as their combination. Seven features were all found to be statistically different between the malignant and the benign groups and their combination has achieved the highest classification accuracy. The seven features include one pathological variable of age, one morphological variable of slope, three texture features of entropy, inverse difference and information correlation, one kinetic feature of SER and one DWI feature of apparent diffusion coefficient (ADC). Together with the selected diagnostic features, various classical classification schemes were used to test their discrimination power through cross validation scheme. The averaged measurements of sensitivity, specificity, AUC and accuracy are 0.85, 0.89, 90.9% and 0.93, respectively. Multi-sided variables which characterize the morphological, kinetic, pathological properties and DWI measurement of ADC can dramatically improve the discriminatory power of breast lesions.

Enhanced multi-protocol analysis via intelligent supervised embedding (EMPrAvISE): detecting prostate cancer on multi-parametric MRI

NASA Astrophysics Data System (ADS)

Viswanath, Satish; Bloch, B. Nicholas; Chappelow, Jonathan; Patel, Pratik; Rofsky, Neil; Lenkinski, Robert; Genega, Elizabeth; Madabhushi, Anant

2011-03-01

Currently, there is significant interest in developing methods for quantitative integration of multi-parametric (structural, functional) imaging data with the objective of building automated meta-classifiers to improve disease detection, diagnosis, and prognosis. Such techniques are required to address the differences in dimensionalities and scales of individual protocols, while deriving an integrated multi-parametric data representation which best captures all disease-pertinent information available. In this paper, we present a scheme called Enhanced Multi-Protocol Analysis via Intelligent Supervised Embedding (EMPrAvISE); a powerful, generalizable framework applicable to a variety of domains for multi-parametric data representation and fusion. Our scheme utilizes an ensemble of embeddings (via dimensionality reduction, DR); thereby exploiting the variance amongst multiple uncorrelated embeddings in a manner similar to ensemble classifier schemes (e.g. Bagging, Boosting). We apply this framework to the problem of prostate cancer (CaP) detection on 12 3 Tesla pre-operative in vivo multi-parametric (T2-weighted, Dynamic Contrast Enhanced, and Diffusion-weighted) magnetic resonance imaging (MRI) studies, in turn comprising a total of 39 2D planar MR images. We first align the different imaging protocols via automated image registration, followed by quantification of image attributes from individual protocols. Multiple embeddings are generated from the resultant high-dimensional feature space which are then combined intelligently to yield a single stable solution. Our scheme is employed in conjunction with graph embedding (for DR) and probabilistic boosting trees (PBTs) to detect CaP on multi-parametric MRI. Finally, a probabilistic pairwise Markov Random Field algorithm is used to apply spatial constraints to the result of the PBT classifier, yielding a per-voxel classification of CaP presence. Per-voxel evaluation of detection results against ground truth for CaP extent on MRI (obtained by spatially registering pre-operative MRI with available whole-mount histological specimens) reveals that EMPrAvISE yields a statistically significant improvement (AUC=0.77) over classifiers constructed from individual protocols (AUC=0.62, 0.62, 0.65, for T2w, DCE, DWI respectively) as well as one trained using multi-parametric feature concatenation (AUC=0.67).

Multi-atlas label fusion using hybrid of discriminative and generative classifiers for segmentation of cardiac MR images.

PubMed

Sedai, Suman; Garnavi, Rahil; Roy, Pallab; Xi Liang

2015-08-01

Multi-atlas segmentation first registers each atlas image to the target image and transfers the label of atlas image to the coordinate system of the target image. The transferred labels are then combined, using a label fusion algorithm. In this paper, we propose a novel label fusion method which aggregates discriminative learning and generative modeling for segmentation of cardiac MR images. First, a probabilistic Random Forest classifier is trained as a discriminative model to obtain the prior probability of a label at the given voxel of the target image. Then, a probability distribution of image patches is modeled using Gaussian Mixture Model for each label, providing the likelihood of the voxel belonging to the label. The final label posterior is obtained by combining the classification score and the likelihood score under Bayesian rule. Comparative study performed on MICCAI 2013 SATA Segmentation Challenge demonstrates that our proposed hybrid label fusion algorithm is accurate than other five state-of-the-art label fusion methods. The proposed method obtains dice similarity coefficient of 0.94 and 0.92 in segmenting epicardium and endocardium respectively. Moreover, our label fusion method achieves more accurate segmentation results compared to four other label fusion methods.

LIBS data analysis using a predictor-corrector based digital signal processor algorithm

NASA Astrophysics Data System (ADS)

Sanders, Alex; Griffin, Steven T.; Robinson, Aaron

2012-06-01

There are many accepted sensor technologies for generating spectra for material classification. Once the spectra are generated, communication bandwidth limitations favor local material classification with its attendant reduction in data transfer rates and power consumption. Transferring sensor technologies such as Cavity Ring-Down Spectroscopy (CRDS) and Laser Induced Breakdown Spectroscopy (LIBS) require effective material classifiers. A result of recent efforts has been emphasis on Partial Least Squares - Discriminant Analysis (PLS-DA) and Principle Component Analysis (PCA). Implementation of these via general purpose computers is difficult in small portable sensor configurations. This paper addresses the creation of a low mass, low power, robust hardware spectra classifier for a limited set of predetermined materials in an atmospheric matrix. Crucial to this is the incorporation of PCA or PLS-DA classifiers into a predictor-corrector style implementation. The system configuration guarantees rapid convergence. Software running on multi-core Digital Signal Processor (DSPs) simulates a stream-lined plasma physics model estimator, reducing Analog-to-Digital (ADC) power requirements. This paper presents the results of a predictorcorrector model implemented on a low power multi-core DSP to perform substance classification. This configuration emphasizes the hardware system and software design via a predictor corrector model that simultaneously decreases the sample rate while performing the classification.

Hierarchical content-based image retrieval by dynamic indexing and guided search

NASA Astrophysics Data System (ADS)

You, Jane; Cheung, King H.; Liu, James; Guo, Linong

2003-12-01

This paper presents a new approach to content-based image retrieval by using dynamic indexing and guided search in a hierarchical structure, and extending data mining and data warehousing techniques. The proposed algorithms include: a wavelet-based scheme for multiple image feature extraction, the extension of a conventional data warehouse and an image database to an image data warehouse for dynamic image indexing, an image data schema for hierarchical image representation and dynamic image indexing, a statistically based feature selection scheme to achieve flexible similarity measures, and a feature component code to facilitate query processing and guide the search for the best matching. A series of case studies are reported, which include a wavelet-based image color hierarchy, classification of satellite images, tropical cyclone pattern recognition, and personal identification using multi-level palmprint and face features.

A Generalized Mixture Framework for Multi-label Classification

PubMed Central

Hong, Charmgil; Batal, Iyad; Hauskrecht, Milos

2015-01-01

We develop a novel probabilistic ensemble framework for multi-label classification that is based on the mixtures-of-experts architecture. In this framework, we combine multi-label classification models in the classifier chains family that decompose the class posterior distribution P(Y1, …, Yd|X) using a product of posterior distributions over components of the output space. Our approach captures different input–output and output–output relations that tend to change across data. As a result, we can recover a rich set of dependency relations among inputs and outputs that a single multi-label classification model cannot capture due to its modeling simplifications. We develop and present algorithms for learning the mixtures-of-experts models from data and for performing multi-label predictions on unseen data instances. Experiments on multiple benchmark datasets demonstrate that our approach achieves highly competitive results and outperforms the existing state-of-the-art multi-label classification methods. PMID:26613069

Evaluating the Effectiveness of Flood Control Strategies in Contrasting Urban Watersheds and Implications for Houston's Future Flood Vulnerability

NASA Astrophysics Data System (ADS)

Ganguly, S.; Kumar, U.; Nemani, R. R.; Kalia, S.; Michaelis, A.

2016-12-01

In this work, we use a Fully Constrained Least Squares Subpixel Learning Algorithm to unmix global WELD (Web Enabled Landsat Data) to obtain fractions or abundances of substrate (S), vegetation (V) and dark objects (D) classes. Because of the sheer nature of data and compute needs, we leveraged the NASA Earth Exchange (NEX) high performance computing architecture to optimize and scale our algorithm for large-scale processing. Subsequently, the S-V-D abundance maps were characterized into 4 classes namely, forest, farmland, water and urban areas (with NPP-VIIRS - national polar orbiting partnership visible infrared imaging radiometer suite nighttime lights data) over California, USA using Random Forest classifier. Validation of these land cover maps with NLCD (National Land Cover Database) 2011 products and NAFD (North American Forest Dynamics) static forest cover maps showed that an overall classification accuracy of over 91% was achieved, which is a 6% improvement in unmixing based classification relative to per-pixel based classification. As such, abundance maps continue to offer an useful alternative to high-spatial resolution data derived classification maps for forest inventory analysis, multi-class mapping for eco-climatic models and applications, fast multi-temporal trend analysis and for societal and policy-relevant applications needed at the watershed scale.

Data Mining Algorithms for Classification of Complex Biomedical Data

ERIC Educational Resources Information Center

Lan, Liang

2012-01-01

In my dissertation, I will present my research which contributes to solve the following three open problems from biomedical informatics: (1) Multi-task approaches for microarray classification; (2) Multi-label classification of gene and protein prediction from multi-source biological data; (3) Spatial scan for movement data. In microarray…

Using Multi-Temporal Imaging Spectroscopy Data to Detect Drought and Bark Beetle Related Conifer Mortality across the Central Sierra Nevada, California, USA

NASA Astrophysics Data System (ADS)

Tane, Z.; Ramirez, C.; Roberts, D. A.; Koltunov, A.; Sweeney, S.

2016-12-01

There is considerable scientific and public interest in the ongoing drought and bark beetle driven conifer mortality in the Central and Southern Sierra Nevada, the scale of which has not been seen previously in California's recorded history. Just before and during this mortality event (2013-2016), Airborne Visible / Infrared Imaging Spectrometer (AVIRIS) data were acquired seasonally over part of the affected area as part of the HyspIRI Preparatory Mission. In this study, we used 11 AVIRIS flight lines from 8 seasonal flights (from spring 2013 to summer 2015) to detect conifer mortality. In addition to the standard pre-processing completed by NASA's Jet Propulsion Lab, AVIRIS images were co-registered and georeferenced between time steps and images were resampled to the spatial resolution and signal-to-noise ratio expected from the proposed HyspIRI satellite. We used summer 2015 high-spatial resolution WorldView-2 and WorldView-3 images from across the study area to collect training data from five scenes, and independent validation data from five additional scenes. A cover class map developed with a machine-learning algorithm, separated pixels into green conifer, red-attack conifer, and non-conifer dominant cover, yielding a high accuracy (above 85% accuracy on the independent validation data) in the tree mortality final map. Discussion will include the effects of temporal information and input dimensionality on classification accuracy, comparison with multi-spectral classification accuracy, the ecological and forest management implications of this work, incorporating 2016 AVIRS images to detect 2016 mortality, and future work in understanding the spatial patterns underlying the mortality.

Operational Tree Species Mapping in a Diverse Tropical Forest with Airborne Imaging Spectroscopy.

PubMed

Baldeck, Claire A; Asner, Gregory P; Martin, Robin E; Anderson, Christopher B; Knapp, David E; Kellner, James R; Wright, S Joseph

2015-01-01

Remote identification and mapping of canopy tree species can contribute valuable information towards our understanding of ecosystem biodiversity and function over large spatial scales. However, the extreme challenges posed by highly diverse, closed-canopy tropical forests have prevented automated remote species mapping of non-flowering tree crowns in these ecosystems. We set out to identify individuals of three focal canopy tree species amongst a diverse background of tree and liana species on Barro Colorado Island, Panama, using airborne imaging spectroscopy data. First, we compared two leading single-class classification methods--binary support vector machine (SVM) and biased SVM--for their performance in identifying pixels of a single focal species. From this comparison we determined that biased SVM was more precise and created a multi-species classification model by combining the three biased SVM models. This model was applied to the imagery to identify pixels belonging to the three focal species and the prediction results were then processed to create a map of focal species crown objects. Crown-level cross-validation of the training data indicated that the multi-species classification model had pixel-level producer's accuracies of 94-97% for the three focal species, and field validation of the predicted crown objects indicated that these had user's accuracies of 94-100%. Our results demonstrate the ability of high spatial and spectral resolution remote sensing to accurately detect non-flowering crowns of focal species within a diverse tropical forest. We attribute the success of our model to recent classification and mapping techniques adapted to species detection in diverse closed-canopy forests, which can pave the way for remote species mapping in a wider variety of ecosystems.

Operational Tree Species Mapping in a Diverse Tropical Forest with Airborne Imaging Spectroscopy

PubMed Central

Baldeck, Claire A.; Asner, Gregory P.; Martin, Robin E.; Anderson, Christopher B.; Knapp, David E.; Kellner, James R.; Wright, S. Joseph

2015-01-01

Remote identification and mapping of canopy tree species can contribute valuable information towards our understanding of ecosystem biodiversity and function over large spatial scales. However, the extreme challenges posed by highly diverse, closed-canopy tropical forests have prevented automated remote species mapping of non-flowering tree crowns in these ecosystems. We set out to identify individuals of three focal canopy tree species amongst a diverse background of tree and liana species on Barro Colorado Island, Panama, using airborne imaging spectroscopy data. First, we compared two leading single-class classification methods—binary support vector machine (SVM) and biased SVM—for their performance in identifying pixels of a single focal species. From this comparison we determined that biased SVM was more precise and created a multi-species classification model by combining the three biased SVM models. This model was applied to the imagery to identify pixels belonging to the three focal species and the prediction results were then processed to create a map of focal species crown objects. Crown-level cross-validation of the training data indicated that the multi-species classification model had pixel-level producer’s accuracies of 94–97% for the three focal species, and field validation of the predicted crown objects indicated that these had user’s accuracies of 94–100%. Our results demonstrate the ability of high spatial and spectral resolution remote sensing to accurately detect non-flowering crowns of focal species within a diverse tropical forest. We attribute the success of our model to recent classification and mapping techniques adapted to species detection in diverse closed-canopy forests, which can pave the way for remote species mapping in a wider variety of ecosystems. PMID:26153693

Classification of follicular lymphoma images: a holistic approach with symbol-based machine learning methods.

PubMed

Zorman, Milan; Sánchez de la Rosa, José Luis; Dinevski, Dejan

2011-12-01

It is not very often to see a symbol-based machine learning approach to be used for the purpose of image classification and recognition. In this paper we will present such an approach, which we first used on the follicular lymphoma images. Lymphoma is a broad term encompassing a variety of cancers of the lymphatic system. Lymphoma is differentiated by the type of cell that multiplies and how the cancer presents itself. It is very important to get an exact diagnosis regarding lymphoma and to determine the treatments that will be most effective for the patient's condition. Our work was focused on the identification of lymphomas by finding follicles in microscopy images provided by the Laboratory of Pathology in the University Hospital of Tenerife, Spain. We divided our work in two stages: in the first stage we did image pre-processing and feature extraction, and in the second stage we used different symbolic machine learning approaches for pixel classification. Symbolic machine learning approaches are often neglected when looking for image analysis tools. They are not only known for a very appropriate knowledge representation, but also claimed to lack computational power. The results we got are very promising and show that symbolic approaches can be successful in image analysis applications.

3D Texture Analysis in Renal Cell Carcinoma Tissue Image Grading

PubMed Central

Cho, Nam-Hoon; Choi, Heung-Kook

2014-01-01

One of the most significant processes in cancer cell and tissue image analysis is the efficient extraction of features for grading purposes. This research applied two types of three-dimensional texture analysis methods to the extraction of feature values from renal cell carcinoma tissue images, and then evaluated the validity of the methods statistically through grade classification. First, we used a confocal laser scanning microscope to obtain image slices of four grades of renal cell carcinoma, which were then reconstructed into 3D volumes. Next, we extracted quantitative values using a 3D gray level cooccurrence matrix (GLCM) and a 3D wavelet based on two types of basis functions. To evaluate their validity, we predefined 6 different statistical classifiers and applied these to the extracted feature sets. In the grade classification results, 3D Haar wavelet texture features combined with principal component analysis showed the best discrimination results. Classification using 3D wavelet texture features was significantly better than 3D GLCM, suggesting that the former has potential for use in a computer-based grading system. PMID:25371701

Machine learning approaches for integrating clinical and imaging features in late-life depression classification and response prediction.

PubMed

Patel, Meenal J; Andreescu, Carmen; Price, Julie C; Edelman, Kathryn L; Reynolds, Charles F; Aizenstein, Howard J

2015-10-01

Currently, depression diagnosis relies primarily on behavioral symptoms and signs, and treatment is guided by trial and error instead of evaluating associated underlying brain characteristics. Unlike past studies, we attempted to estimate accurate prediction models for late-life depression diagnosis and treatment response using multiple machine learning methods with inputs of multi-modal imaging and non-imaging whole brain and network-based features. Late-life depression patients (medicated post-recruitment) (n = 33) and older non-depressed individuals (n = 35) were recruited. Their demographics and cognitive ability scores were recorded, and brain characteristics were acquired using multi-modal magnetic resonance imaging pretreatment. Linear and nonlinear learning methods were tested for estimating accurate prediction models. A learning method called alternating decision trees estimated the most accurate prediction models for late-life depression diagnosis (87.27% accuracy) and treatment response (89.47% accuracy). The diagnosis model included measures of age, Mini-mental state examination score, and structural imaging (e.g. whole brain atrophy and global white mater hyperintensity burden). The treatment response model included measures of structural and functional connectivity. Combinations of multi-modal imaging and/or non-imaging measures may help better predict late-life depression diagnosis and treatment response. As a preliminary observation, we speculate that the results may also suggest that different underlying brain characteristics defined by multi-modal imaging measures-rather than region-based differences-are associated with depression versus depression recovery because to our knowledge this is the first depression study to accurately predict both using the same approach. These findings may help better understand late-life depression and identify preliminary steps toward personalized late-life depression treatment. Copyright © 2015 John Wiley & Sons, Ltd.

Aggregation of Sentinel-2 time series classifications as a solution for multitemporal analysis

NASA Astrophysics Data System (ADS)

Lewiński, Stanislaw; Nowakowski, Artur; Malinowski, Radek; Rybicki, Marcin; Kukawska, Ewa; Krupiński, Michał

2017-10-01

The general aim of this work was to elaborate efficient and reliable aggregation method that could be used for creating a land cover map at a global scale from multitemporal satellite imagery. The study described in this paper presents methods for combining results of land cover/land use classifications performed on single-date Sentinel-2 images acquired at different time periods. For that purpose different aggregation methods were proposed and tested on study sites spread on different continents. The initial classifications were performed with Random Forest classifier on individual Sentinel-2 images from a time series. In the following step the resulting land cover maps were aggregated pixel by pixel using three different combinations of information on the number of occurrences of a certain land cover class within a time series and the posterior probability of particular classes resulting from the Random Forest classification. From the proposed methods two are shown superior and in most cases were able to reach or outperform the accuracy of the best individual classifications of single-date images. Moreover, the aggregations results are very stable when used on data with varying cloudiness. They also enable to reduce considerably the number of cloudy pixels in the resulting land cover map what is significant advantage for mapping areas with frequent cloud coverage.

Wood industrial application for quality control using image processing

NASA Astrophysics Data System (ADS)

Ferreira, M. J. O.; Neves, J. A. C.

1994-11-01

This paper describes an application of image processing for the furniture industry. It uses an input data, images acquired directly from wood planks where defects were previously marked by an operator. A set of image processing algorithms separates and codes each defect and detects a polygonal approach of the line representing them. For such a purpose we developed a pattern classification algorithm and a new technique of segmenting defects by carving the convex hull of the binary shape representing each isolated defect.

A study of earthquake-induced building detection by object oriented classification approach

NASA Astrophysics Data System (ADS)

Sabuncu, Asli; Damla Uca Avci, Zehra; Sunar, Filiz

2017-04-01

Among the natural hazards, earthquakes are the most destructive disasters and cause huge loss of lives, heavily infrastructure damages and great financial losses every year all around the world. According to the statistics about the earthquakes, more than a million earthquakes occur which is equal to two earthquakes per minute in the world. Natural disasters have brought more than 780.000 deaths approximately % 60 of all mortality is due to the earthquakes after 2001. A great earthquake took place at 38.75 N 43.36 E in the eastern part of Turkey in Van Province on On October 23th, 2011. 604 people died and about 4000 buildings seriously damaged and collapsed after this earthquake. In recent years, the use of object oriented classification approach based on different object features, such as spectral, textural, shape and spatial information, has gained importance and became widespread for the classification of high-resolution satellite images and orthophotos. The motivation of this study is to detect the collapsed buildings and debris areas after the earthquake by using very high-resolution satellite images and orthophotos with the object oriented classification and also see how well remote sensing technology was carried out in determining the collapsed buildings. In this study, two different land surfaces were selected as homogenous and heterogeneous case study areas. In the first step of application, multi-resolution segmentation was applied and optimum parameters were selected to obtain the objects in each area after testing different color/shape and compactness/smoothness values. In the next step, two different classification approaches, namely "supervised" and "unsupervised" approaches were applied and their classification performances were compared. Object-based Image Analysis (OBIA) was performed using e-Cognition software.

The Study of Residential Areas Extraction Based on GF-3 Texture Image Segmentation

NASA Astrophysics Data System (ADS)

Shao, G.; Luo, H.; Tao, X.; Ling, Z.; Huang, Y.

2018-04-01

The study chooses the standard stripe and dual polarization SAR images of GF-3 as the basic data. Residential areas extraction processes and methods based upon GF-3 images texture segmentation are compared and analyzed. GF-3 images processes include radiometric calibration, complex data conversion, multi-look processing, images filtering, and then conducting suitability analysis for different images filtering methods, the filtering result show that the filtering method of Kuan is efficient for extracting residential areas, then, we calculated and analyzed the texture feature vectors using the GLCM (the Gary Level Co-occurrence Matrix), texture feature vectors include the moving window size, step size and angle, the result show that window size is 11*11, step is 1, and angle is 0°, which is effective and optimal for the residential areas extracting. And with the FNEA (Fractal Net Evolution Approach), we segmented the GLCM texture images, and extracted the residential areas by threshold setting. The result of residential areas extraction verified and assessed by confusion matrix. Overall accuracy is 0.897, kappa is 0.881, and then we extracted the residential areas by SVM classification based on GF-3 images, the overall accuracy is less 0.09 than the accuracy of extraction method based on GF-3 Texture Image Segmentation. We reached the conclusion that residential areas extraction based on GF-3 SAR texture image multi-scale segmentation is simple and highly accurate. although, it is difficult to obtain multi-spectrum remote sensing image in southern China, in cloudy and rainy weather throughout the year, this paper has certain reference significance.

Automated connectionist-geostatistical classification as an approach to identify sea ice and land ice types, properties and provinces

NASA Astrophysics Data System (ADS)

Goetz-Weiss, L. R.; Herzfeld, U. C.; Trantow, T.; Hunke, E. C.; Maslanik, J. A.; Crocker, R. I.

2016-12-01

An important problem in model-data comparison is the identification of parameters that can be extracted from observational data as well as used in numerical models, which are typically based on idealized physical processes. Here, we present a suite of approaches to characterization and classification of sea ice and land ice types, properties and provinces based on several types of remote-sensing data. Applications will be given to not only illustrate the approach, but employ it in model evaluation and understanding of physical processes. (1) In a geostatistical characterization, spatial sea-ice properties in the Chukchi and Beaufort Sea and in Elsoon Lagoon are derived from analysis of RADARSAT and ERS-2 SAR data. (2) The analysis is taken further by utilizing multi-parameter feature vectors as inputs for unsupervised and supervised statistical classification, which facilitates classification of different sea-ice types. (3) Characteristic sea-ice parameters, as resultant from the classification, can then be applied in model evaluation, as demonstrated for the ridging scheme of the Los Alamos sea ice model, CICE, using high-resolution altimeter and image data collected from unmanned aircraft over Fram Strait during the Characterization of Arctic Sea Ice Experiment (CASIE). The characteristic parameters chosen in this application are directly related to deformation processes, which also underly the ridging scheme. (4) The method that is capable of the most complex classification tasks is the connectionist-geostatistical classification method. This approach has been developed to identify currently up to 18 different crevasse types in order to map progression of the surge through the complex Bering-Bagley Glacier System, Alaska, in 2011-2014. The analysis utilizes airborne altimeter data and video image data and satellite image data. Results of the crevasse classification are compare to fracture modeling and found to match.

Application of Multi-Source Remote Sensing Image in Yunnan Province Grassland Resources Investigation

NASA Astrophysics Data System (ADS)

Li, J.; Wen, G.; Li, D.

2018-04-01

Trough mastering background information of Yunnan province grassland resources utilization and ecological conditions to improves grassland elaborating management capacity, it carried out grassland resource investigation work by Yunnan province agriculture department in 2017. The traditional grassland resource investigation method is ground based investigation, which is time-consuming and inefficient, especially not suitable for large scale and hard-to-reach areas. While remote sensing is low cost, wide range and efficient, which can reflect grassland resources present situation objectively. It has become indispensable grassland monitoring technology and data sources and it has got more and more recognition and application in grassland resources monitoring research. This paper researches application of multi-source remote sensing image in Yunnan province grassland resources investigation. First of all, it extracts grassland resources thematic information and conducts field investigation through BJ-2 high space resolution image segmentation. Secondly, it classifies grassland types and evaluates grassland degradation degree through high resolution characteristics of Landsat 8 image. Thirdly, it obtained grass yield model and quality classification through high resolution and wide scanning width characteristics of MODIS images and sample investigate data. Finally, it performs grassland field qualitative analysis through UAV remote sensing image. According to project area implementation, it proves that multi-source remote sensing data can be applied to the grassland resources investigation in Yunnan province and it is indispensable method.

Developing a multi-Kinect-system for monitoring in dairy cows: object recognition and surface analysis using wavelets.

PubMed

Salau, J; Haas, J H; Thaller, G; Leisen, M; Junge, W

2016-09-01

Camera-based systems in dairy cattle were intensively studied over the last years. Different from this study, single camera systems with a limited range of applications were presented, mostly using 2D cameras. This study presents current steps in the development of a camera system comprising multiple 3D cameras (six Microsoft Kinect cameras) for monitoring purposes in dairy cows. An early prototype was constructed, and alpha versions of software for recording, synchronizing, sorting and segmenting images and transforming the 3D data in a joint coordinate system have already been implemented. This study introduced the application of two-dimensional wavelet transforms as method for object recognition and surface analyses. The method was explained in detail, and four differently shaped wavelets were tested with respect to their reconstruction error concerning Kinect recorded depth maps from different camera positions. The images' high frequency parts reconstructed from wavelet decompositions using the haar and the biorthogonal 1.5 wavelet were statistically analyzed with regard to the effects of image fore- or background and of cows' or persons' surface. Furthermore, binary classifiers based on the local high frequencies have been implemented to decide whether a pixel belongs to the image foreground and if it was located on a cow or a person. Classifiers distinguishing between image regions showed high (⩾0.8) values of Area Under reciever operation characteristic Curve (AUC). The classifications due to species showed maximal AUC values of 0.69.

Machine processing of remotely sensed data; Proceedings of the Conference, Purdue University, West Lafayette, Ind., October 16-18, 1973

NASA Technical Reports Server (NTRS)

1973-01-01

Topics discussed include the management and processing of earth resources information, special-purpose processors for the machine processing of remotely sensed data, digital image registration by a mathematical programming technique, the use of remote-sensor data in land classification (in particular, the use of ERTS-1 multispectral scanning data), the use of remote-sensor data in geometrical transformations and mapping, earth resource measurement with the aid of ERTS-1 multispectral scanning data, the use of remote-sensor data in the classification of turbidity levels in coastal zones and in the identification of ecological anomalies, the problem of feature selection and the classification of objects in multispectral images, the estimation of proportions of certain categories of objects, and a number of special systems and techniques. Individual items are announced in this issue.

Multiple directed graph large-class multi-spectral processor

NASA Technical Reports Server (NTRS)

Casasent, David; Liu, Shiaw-Dong; Yoneyama, Hideyuki

1988-01-01

Numerical analysis techniques for the interpretation of high-resolution imaging-spectrometer data are described and demonstrated. The method proposed involves the use of (1) a hierarchical classifier with a tree structure generated automatically by a Fisher linear-discriminant-function algorithm and (2) a novel multiple-directed-graph scheme which reduces the local maxima and the number of perturbations required. Results for a 500-class test problem involving simulated imaging-spectrometer data are presented in tables and graphs; 100-percent-correct classification is achieved with an improvement factor of 5.

Visual Recognition Software for Binary Classification and Its Application to Spruce Pollen Identification

PubMed Central

Tcheng, David K.; Nayak, Ashwin K.; Fowlkes, Charless C.; Punyasena, Surangi W.

2016-01-01

Discriminating between black and white spruce (Picea mariana and Picea glauca) is a difficult palynological classification problem that, if solved, would provide valuable data for paleoclimate reconstructions. We developed an open-source visual recognition software (ARLO, Automated Recognition with Layered Optimization) capable of differentiating between these two species at an accuracy on par with human experts. The system applies pattern recognition and machine learning to the analysis of pollen images and discovers general-purpose image features, defined by simple features of lines and grids of pixels taken at different dimensions, size, spacing, and resolution. It adapts to a given problem by searching for the most effective combination of both feature representation and learning strategy. This results in a powerful and flexible framework for image classification. We worked with images acquired using an automated slide scanner. We first applied a hash-based “pollen spotting” model to segment pollen grains from the slide background. We next tested ARLO’s ability to reconstruct black to white spruce pollen ratios using artificially constructed slides of known ratios. We then developed a more scalable hash-based method of image analysis that was able to distinguish between the pollen of black and white spruce with an estimated accuracy of 83.61%, comparable to human expert performance. Our results demonstrate the capability of machine learning systems to automate challenging taxonomic classifications in pollen analysis, and our success with simple image representations suggests that our approach is generalizable to many other object recognition problems. PMID:26867017

WE-G-207-05: Relationship Between CT Image Quality, Segmentation Performance, and Quantitative Image Feature Analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, J; Nishikawa, R; Reiser, I

Purpose: Segmentation quality can affect quantitative image feature analysis. The objective of this study is to examine the relationship between computed tomography (CT) image quality, segmentation performance, and quantitative image feature analysis. Methods: A total of 90 pathology proven breast lesions in 87 dedicated breast CT images were considered. An iterative image reconstruction (IIR) algorithm was used to obtain CT images with different quality. With different combinations of 4 variables in the algorithm, this study obtained a total of 28 different qualities of CT images. Two imaging tasks/objectives were considered: 1) segmentation and 2) classification of the lesion as benignmore » or malignant. Twenty-three image features were extracted after segmentation using a semi-automated algorithm and 5 of them were selected via a feature selection technique. Logistic regression was trained and tested using leave-one-out-cross-validation and its area under the ROC curve (AUC) was recorded. The standard deviation of a homogeneous portion and the gradient of a parenchymal portion of an example breast were used as an estimate of image noise and sharpness. The DICE coefficient was computed using a radiologist’s drawing on the lesion. Mean DICE and AUC were used as performance metrics for each of the 28 reconstructions. The relationship between segmentation and classification performance under different reconstructions were compared. Distributions (median, 95% confidence interval) of DICE and AUC for each reconstruction were also compared. Results: Moderate correlation (Pearson’s rho = 0.43, p-value = 0.02) between DICE and AUC values was found. However, the variation between DICE and AUC values for each reconstruction increased as the image sharpness increased. There was a combination of IIR parameters that resulted in the best segmentation with the worst classification performance. Conclusion: There are certain images that yield better segmentation or classification performance. The best segmentation Result does not necessarily lead to the best classification Result. This work has been supported in part by grants from the NIH R21-EB015053. R Nishikawa is receives royalties form Hologic, Inc.« less

(abstract) Topographic Signatures in Geology

NASA Technical Reports Server (NTRS)

Farr, Tom G.; Evans, Diane L.

1996-01-01

Topographic information is required for many Earth Science investigations. For example, topography is an important element in regional and global geomorphic studies because it reflects the interplay between the climate-driven processes of erosion and the tectonic processes of uplift. A number of techniques have been developed to analyze digital topographic data, including Fourier texture analysis. A Fourier transform of the topography of an area allows the spatial frequency content of the topography to be analyzed. Band-pass filtering of the transform produces images representing the amplitude of different spatial wavelengths. These are then used in a multi-band classification to map units based on their spatial frequency content. The results using a radar image instead of digital topography showed good correspondence to a geologic map, however brightness variations in the image unrelated to topography caused errors. An additional benefit to the use of Fourier band-pass images for the classification is that the textural signatures of the units are quantative measures of the spatial characteristics of the units that may be used to map similar units in similar environments.

TH-CD-206-05: Machine-Learning Based Segmentation of Organs at Risks for Head and Neck Radiotherapy Planning

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ibragimov, B; Pernus, F; Strojan, P

Purpose: Accurate and efficient delineation of tumor target and organs-at-risks is essential for the success of radiotherapy. In reality, despite of decades of intense research efforts, auto-segmentation has not yet become clinical practice. In this study, we present, for the first time, a deep learning-based classification algorithm for autonomous segmentation in head and neck (HaN) treatment planning. Methods: Fifteen HN datasets of CT, MR and PET images with manual annotation of organs-at-risk (OARs) including spinal cord, brainstem, optic nerves, chiasm, eyes, mandible, tongue, parotid glands were collected and saved in a library of plans. We also have ten super-resolution MRmore » images of the tongue area, where the genioglossus and inferior longitudinalis tongue muscles are defined as organs of interest. We applied the concepts of random forest- and deep learning-based object classification for automated image annotation with the aim of using machine learning to facilitate head and neck radiotherapy planning process. In this new paradigm of segmentation, random forests were used for landmark-assisted segmentation of super-resolution MR images. Alternatively to auto-segmentation with random forest-based landmark detection, deep convolutional neural networks were developed for voxel-wise segmentation of OARs in single and multi-modal images. The network consisted of three pairs of convolution and pooing layer, one RuLU layer and a softmax layer. Results: We present a comprehensive study on using machine learning concepts for auto-segmentation of OARs and tongue muscles for the HaN radiotherapy planning. An accuracy of 81.8% in terms of Dice coefficient was achieved for segmentation of genioglossus and inferior longitudinalis tongue muscles. Preliminary results of OARs regimentation also indicate that deep-learning afforded an unprecedented opportunities to improve the accuracy and robustness of radiotherapy planning. Conclusion: A novel machine learning framework has been developed for image annotation and structure segmentation. Our results indicate the great potential of deep learning in radiotherapy treatment planning.« less

The Accuracy and Reliability of Crowdsource Annotations of Digital Retinal Images

PubMed Central

Mitry, Danny; Zutis, Kris; Dhillon, Baljean; Peto, Tunde; Hayat, Shabina; Khaw, Kay-Tee; Morgan, James E.; Moncur, Wendy; Trucco, Emanuele; Foster, Paul J.

2016-01-01

Purpose Crowdsourcing is based on outsourcing computationally intensive tasks to numerous individuals in the online community who have no formal training. Our aim was to develop a novel online tool designed to facilitate large-scale annotation of digital retinal images, and to assess the accuracy of crowdsource grading using this tool, comparing it to expert classification. Methods We used 100 retinal fundus photograph images with predetermined disease criteria selected by two experts from a large cohort study. The Amazon Mechanical Turk Web platform was used to drive traffic to our site so anonymous workers could perform a classification and annotation task of the fundus photographs in our dataset after a short training exercise. Three groups were assessed: masters only, nonmasters only and nonmasters with compulsory training. We calculated the sensitivity, specificity, and area under the curve (AUC) of receiver operating characteristic (ROC) plots for all classifications compared to expert grading, and used the Dice coefficient and consensus threshold to assess annotation accuracy. Results In total, we received 5389 annotations for 84 images (excluding 16 training images) in 2 weeks. A specificity and sensitivity of 71% (95% confidence interval [CI], 69%–74%) and 87% (95% CI, 86%–88%) was achieved for all classifications. The AUC in this study for all classifications combined was 0.93 (95% CI, 0.91–0.96). For image annotation, a maximal Dice coefficient (∼0.6) was achieved with a consensus threshold of 0.25. Conclusions This study supports the hypothesis that annotation of abnormalities in retinal images by ophthalmologically naive individuals is comparable to expert annotation. The highest AUC and agreement with expert annotation was achieved in the nonmasters with compulsory training group. Translational Relevance The use of crowdsourcing as a technique for retinal image analysis may be comparable to expert graders and has the potential to deliver timely, accurate, and cost-effective image analysis. PMID:27668130

Learning semantic histopathological representation for basal cell carcinoma classification

NASA Astrophysics Data System (ADS)

Gutiérrez, Ricardo; Rueda, Andrea; Romero, Eduardo

2013-03-01

Diagnosis of a histopathology glass slide is a complex process that involves accurate recognition of several structures, their function in the tissue and their relation with other structures. The way in which the pathologist represents the image content and the relations between those objects yields a better and accurate diagnoses. Therefore, an appropriate semantic representation of the image content will be useful in several analysis tasks such as cancer classification, tissue retrieval and histopahological image analysis, among others. Nevertheless, to automatically recognize those structures and extract their inner semantic meaning are still very challenging tasks. In this paper we introduce a new semantic representation that allows to describe histopathological concepts suitable for classification. The approach herein identify local concepts using a dictionary learning approach, i.e., the algorithm learns the most representative atoms from a set of random sampled patches, and then models the spatial relations among them by counting the co-occurrence between atoms, while penalizing the spatial distance. The proposed approach was compared with a bag-of-features representation in a tissue classification task. For this purpose, 240 histological microscopical fields of view, 24 per tissue class, were collected. Those images fed a Support Vector Machine classifier per class, using 120 images as train set and the remaining ones for testing, maintaining the same proportion of each concept in the train and test sets. The obtained classification results, averaged from 100 random partitions of training and test sets, shows that our approach is more sensitive in average than the bag-of-features representation in almost 6%.

Multi-static Serial LiDAR for Surveillance and Identification of Marine Life at MHK Installations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Alsenas, Gabriel; Dalgleish, Fraser; Ouyang, Bing

Final Report for project DE-EE0006787: Multi-static Serial LiDAR for Surveillance and Identification of Marine Life at MHK Installations. This project developed and tested an optical monitoring system prototype that will be suitable for marine and hydrokinetic (MHK) full project lifecycle observation (baseline, commissioning, and decommissioning), with automated real-time classification of marine animals. This system can be deployed to collect pre-installation baseline species observations at a proposed deployment site with minimal post-processing overhead. To satisfy deployed MHK project species of concern (e.g. Endangered Species Act-listed) monitoring requirements, the system provides automated tracking and notification of the presence of managed animals withinmore » established perimeters of MHK equipment and provides high resolution imagery of their behavior through a wide range of conditions. During a project’s decommissioning stage, the system can remain installed to provide resource managers with post-installation data. Our technology, known as an Unobtrusive Multi-static Serial LiDAR Imager (UMSLI), is a technology transfer of underwater distributed LiDAR imaging technology that preserves the advantages of traditional optical and acoustic solutions while overcoming associated disadvantages for MHK environmental monitoring applications. This new approach is a purposefully-designed, reconfigurable adaptation of an existing technology that can be easily mounted on or around different classes of MHK equipment. The system uses low average power red (638nm) laser illumination to be invisible and eye-safe to marine animals and is compact and cost effective. The equipment is designed for long term, maintenance-free operations, to inherently generate a sparse primary dataset that only includes detected anomalies (animal presence information), and to allow robust real-time automated animal classification/identification with a low data bandwidth requirement. Advantages of the technology over others currently being used or being considered for MHK monitoring include: Unlike a conventional camera, the depth of field is near-infinite and limited by attenuation (approximately 5-8 m) rather than focal properties of a lens; Operation in an adaptive mode which can project a sparse grid of pulses with higher peak power for longer range detection (>10 meters) and track animals within a zone of interest with high resolution imagery for identification of marine life at closer range (<5m); System detection limit and Signal-to-Noise-Ratio is superior to a camera, due to rejection of both backscattering component and ambient solar background; Multiple wide-angle pulsed laser illuminators and bucket detectors can be flexibly configured to cover a 4pi steradian (i.e. omnidirectional) scene volume, while also retrieving 3D features of animal targets from timing information; Process and classification framework centered around a novel active learning and incremental classification classifier that enables accurate identification of a variety of marine animals automatically; A two-tiered monitoring architecture and invisible watermarking-based data archiving and retrieving approach ensures significant data reduction while preserving high fidelity monitoring. A methodology to train and optimize the classifier for target species of concern to optimize site monitoring effectiveness. This technological innovation addresses a high priority regulatory requirement to observe marine life interaction near MHK projects. Our solution improves resource manager confidence that any interactions between marine animals and equipment are observed in a cost-effective and automated manner. Without EERE funding, this novel application of multi-static LiDAR would not have been available to the MHK community for environmental monitoring.« less

Instructional image processing on a university mainframe: The Kansas system

NASA Technical Reports Server (NTRS)

Williams, T. H. L.; Siebert, J.; Gunn, C.

1981-01-01

An interactive digital image processing program package was developed that runs on the University of Kansas central computer, a Honeywell Level 66 multi-processor system. The module form of the package allows easy and rapid upgrades and extensions of the system and is used in remote sensing courses in the Department of Geography, in regional five-day short courses for academics and professionals, and also in remote sensing projects and research. The package comprises three self-contained modules of processing functions: Subimage extraction and rectification; image enhancement, preprocessing and data reduction; and classification. Its use in a typical course setting is described. Availability and costs are considered.

Texture classification of normal tissues in computed tomography using Gabor filters

NASA Astrophysics Data System (ADS)

Dettori, Lucia; Bashir, Alia; Hasemann, Julie

2007-03-01

The research presented in this article is aimed at developing an automated imaging system for classification of normal tissues in medical images obtained from Computed Tomography (CT) scans. Texture features based on a bank of Gabor filters are used to classify the following tissues of interests: liver, spleen, kidney, aorta, trabecular bone, lung, muscle, IP fat, and SQ fat. The approach consists of three steps: convolution of the regions of interest with a bank of 32 Gabor filters (4 frequencies and 8 orientations), extraction of two Gabor texture features per filter (mean and standard deviation), and creation of a Classification and Regression Tree-based classifier that automatically identifies the various tissues. The data set used consists of approximately 1000 DIACOM images from normal chest and abdominal CT scans of five patients. The regions of interest were labeled by expert radiologists. Optimal trees were generated using two techniques: 10-fold cross-validation and splitting of the data set into a training and a testing set. In both cases, perfect classification rules were obtained provided enough images were available for training (~65%). All performance measures (sensitivity, specificity, precision, and accuracy) for all regions of interest were at 100%. This significantly improves previous results that used Wavelet, Ridgelet, and Curvelet texture features, yielding accuracy values in the 85%-98% range The Gabor filters' ability to isolate features at different frequencies and orientations allows for a multi-resolution analysis of texture essential when dealing with, at times, very subtle differences in the texture of tissues in CT scans.

Enhanced iris recognition method based on multi-unit iris images

NASA Astrophysics Data System (ADS)

Shin, Kwang Yong; Kim, Yeong Gon; Park, Kang Ryoung

2013-04-01

For the purpose of biometric person identification, iris recognition uses the unique characteristics of the patterns of the iris; that is, the eye region between the pupil and the sclera. When obtaining an iris image, the iris's image is frequently rotated because of the user's head roll toward the left or right shoulder. As the rotation of the iris image leads to circular shifting of the iris features, the accuracy of iris recognition is degraded. To solve this problem, conventional iris recognition methods use shifting of the iris feature codes to perform the matching. However, this increases the computational complexity and level of false acceptance error. To solve these problems, we propose a novel iris recognition method based on multi-unit iris images. Our method is novel in the following five ways compared with previous methods. First, to detect both eyes, we use Adaboost and a rapid eye detector (RED) based on the iris shape feature and integral imaging. Both eyes are detected using RED in the approximate candidate region that consists of the binocular region, which is determined by the Adaboost detector. Second, we classify the detected eyes into the left and right eyes, because the iris patterns in the left and right eyes in the same person are different, and they are therefore considered as different classes. We can improve the accuracy of iris recognition using this pre-classification of the left and right eyes. Third, by measuring the angle of head roll using the two center positions of the left and right pupils, detected by two circular edge detectors, we obtain the information of the iris rotation angle. Fourth, in order to reduce the error and processing time of iris recognition, adaptive bit-shifting based on the measured iris rotation angle is used in feature matching. Fifth, the recognition accuracy is enhanced by the score fusion of the left and right irises. Experimental results on the iris open database of low-resolution images showed that the averaged equal error rate of iris recognition using the proposed method was 4.3006%, which is lower than that of other methods.

Influence of different topographic correction strategies on mountain vegetation classification accuracy in the Lancang Watershed, China

NASA Astrophysics Data System (ADS)

Zhang, Zhiming; de Wulf, Robert R.; van Coillie, Frieke M. B.; Verbeke, Lieven P. C.; de Clercq, Eva M.; Ou, Xiaokun

2011-01-01

Mapping of vegetation using remote sensing in mountainous areas is considerably hampered by topographic effects on the spectral response pattern. A variety of topographic normalization techniques have been proposed to correct these illumination effects due to topography. The purpose of this study was to compare six different topographic normalization methods (Cosine correction, Minnaert correction, C-correction, Sun-canopy-sensor correction, two-stage topographic normalization, and slope matching technique) for their effectiveness in enhancing vegetation classification in mountainous environments. Since most of the vegetation classes in the rugged terrain of the Lancang Watershed (China) did not feature a normal distribution, artificial neural networks (ANNs) were employed as a classifier. Comparing the ANN classifications, none of the topographic correction methods could significantly improve ETM+ image classification overall accuracy. Nevertheless, at the class level, the accuracy of pine forest could be increased by using topographically corrected images. On the contrary, oak forest and mixed forest accuracies were significantly decreased by using corrected images. The results also showed that none of the topographic normalization strategies was satisfactorily able to correct for the topographic effects in severely shadowed areas.

Multi-Resolution Analysis of MODIS and ASTER Satellite Data for Water Classification

DTIC Science & Technology

2006-09-01

spectral bands, but also with different pixel resolutions . The overall goal... the total water surface. Due to the constraint that high spatial resolution satellite images are low temporal resolution , one needs a reliable method...at 15 m resolution , were processed. We used MODIS reflectance data from MOD02 Level 1B data. Even the spatial resolution of the 1240 nm

Nonparametric Representations for Integrated Inference, Control, and Sensing

DTIC Science & Technology

2015-10-01

Learning (ICML), 2013. [20] Jeff Donahue, Yangqing Jia, Oriol Vinyals, Judy Hoffman, Ning Zhang, Eric Tzeng, and Trevor Darrell. DeCAF: A deep ...unlimited. Multi-layer feature learning “SuperVision” Convolutional Neural Network (CNN) ImageNet Classification with Deep Convolutional Neural Networks...to develop a new framework for autonomous operations that will extend the state of the art in distributed learning and modeling from data, and

Automated classification and visualization of healthy and pathological dental tissues based on near-infrared hyper-spectral imaging

NASA Astrophysics Data System (ADS)

Usenik, Peter; Bürmen, Miran; Vrtovec, Tomaž; Fidler, Aleš; Pernuš, Franjo; Likar, Boštjan

2011-03-01

Despite major improvements in dental healthcare and technology, dental caries remains one of the most prevalent chronic diseases of modern society. The initial stages of dental caries are characterized by demineralization of enamel crystals, commonly known as white spots which are difficult to diagnose. If detected early enough, such demineralization can be arrested and reversed by non-surgical means through well established dental treatments (fluoride therapy, anti-bacterial therapy, low intensity laser irradiation). Near-infrared (NIR) hyper-spectral imaging is a new promising technique for early detection of demineralization based on distinct spectral features of healthy and pathological dental tissues. In this study, we apply NIR hyper-spectral imaging to classify and visualize healthy and pathological dental tissues including enamel, dentin, calculus, dentin caries, enamel caries and demineralized areas. For this purpose, a standardized teeth database was constructed consisting of 12 extracted human teeth with different degrees of natural dental lesions imaged by NIR hyper-spectral system, X-ray and digital color camera. The color and X-ray images of teeth were presented to a clinical expert for localization and classification of the dental tissues, thereby obtaining the gold standard. Principal component analysis was used for multivariate local modeling of healthy and pathological dental tissues. Finally, the dental tissues were classified by employing multiple discriminant analysis. High agreement was observed between the resulting classification and the gold standard with the classification sensitivity and specificity exceeding 85 % and 97 %, respectively. This study demonstrates that NIR hyper-spectral imaging has considerable diagnostic potential for imaging hard dental tissues.

Spotting East African mammals in open savannah from space.

PubMed

Yang, Zheng; Wang, Tiejun; Skidmore, Andrew K; de Leeuw, Jan; Said, Mohammed Y; Freer, Jim

2014-01-01

Knowledge of population dynamics is essential for managing and conserving wildlife. Traditional methods of counting wild animals such as aerial survey or ground counts not only disturb animals, but also can be labour intensive and costly. New, commercially available very high-resolution satellite images offer great potential for accurate estimates of animal abundance over large open areas. However, little research has been conducted in the area of satellite-aided wildlife census, although computer processing speeds and image analysis algorithms have vastly improved. This paper explores the possibility of detecting large animals in the open savannah of Maasai Mara National Reserve, Kenya from very high-resolution GeoEye-1 satellite images. A hybrid image classification method was employed for this specific purpose by incorporating the advantages of both pixel-based and object-based image classification approaches. This was performed in two steps: firstly, a pixel-based image classification method, i.e., artificial neural network was applied to classify potential targets with similar spectral reflectance at pixel level; and then an object-based image classification method was used to further differentiate animal targets from the surrounding landscapes through the applications of expert knowledge. As a result, the large animals in two pilot study areas were successfully detected with an average count error of 8.2%, omission error of 6.6% and commission error of 13.7%. The results of the study show for the first time that it is feasible to perform automated detection and counting of large wild animals in open savannahs from space, and therefore provide a complementary and alternative approach to the conventional wildlife survey techniques.

Quality grading of Atlantic salmon (Salmo salar) by computer vision.

PubMed

Misimi, E; Erikson, U; Skavhaug, A

2008-06-01

In this study, we present a promising method of computer vision-based quality grading of whole Atlantic salmon (Salmo salar). Using computer vision, it was possible to differentiate among different quality grades of Atlantic salmon based on the external geometrical information contained in the fish images. Initially, before the image acquisition, the fish were subjectively graded and labeled into grading classes by a qualified human inspector in the processing plant. Prior to classification, the salmon images were segmented into binary images, and then feature extraction was performed on the geometrical parameters of the fish from the grading classes. The classification algorithm was a threshold-based classifier, which was designed using linear discriminant analysis. The performance of the classifier was tested by using the leave-one-out cross-validation method, and the classification results showed a good agreement between the classification done by human inspectors and by the computer vision. The computer vision-based method classified correctly 90% of the salmon from the data set as compared with the classification by human inspector. Overall, it was shown that computer vision can be used as a powerful tool to grade Atlantic salmon into quality grades in a fast and nondestructive manner by a relatively simple classifier algorithm. The low cost of implementation of today's advanced computer vision solutions makes this method feasible for industrial purposes in fish plants as it can replace manual labor, on which grading tasks still rely.

Hyperspectral Mapping of the Invasive Species Pepperweed and the Development of a Habitat Suitability Model

NASA Technical Reports Server (NTRS)

Nguyen, Andrew; Gole, Alexander; Randall, Jarom; Dlott, Glade; Zhang, Sylvia; Alfaro, Brian; Schmidt, Cindy; Skiles, J. W.

2011-01-01

Mapping and predicting the spatial distribution of invasive plant species is central to habitat management, however difficult to implement at landscape and regional scales. Remote sensing techniques can reduce the impact field campaigns have on these ecologically sensitive areas and can provide a regional and multi-temporal view of invasive species spread. Invasive perennial pepperweed (Lepidium latifolium) is now widespread in fragmented estuaries of the South San Francisco Bay, and is shown to degrade native vegetation in estuaries and adjacent habitats, thereby reducing forage and shelter for wildlife. The purpose of this study is to map the present distribution of pepperweed in estuarine areas of the South San Francisco Bay Salt Pond Restoration Project (Alviso, CA), and create a habitat suitability model to predict future spread. Pepperweed reflectance data were collected in-situ with a GER 1500 spectroradiometer along with 88 corresponding pepperweed presence and absence points used for building the statistical models. The spectral angle mapper (SAM) classification algorithm was used to distinguish the reflectance spectrum of pepperweed and map its distribution using an image from EO-1 Hyperion. To map pepperweed, we performed a supervised classification on an ASTER image with a resulting classification accuracy of 71.8%. We generated a weighted overlay analysis model within a geographic information system (GIS) framework to predict areas in the study site most susceptible to pepperweed colonization. Variables for the model included propensity for disturbance, status of pond restoration, proximity to water channels, and terrain curvature. A Generalized Additive Model (GAM) was also used to generate a probability map and investigate the statistical probability that each variable contributed to predict pepperweed spread. Results from the GAM revealed distance to channels, distance to ponds and curvature were statistically significant (p < 0.01) in determining the locations of suitable pepperweed habitats.

A neural network approach for enhancing information extraction from multispectral image data

USGS Publications Warehouse

Liu, J.; Shao, G.; Zhu, H.; Liu, S.

2005-01-01

A back-propagation artificial neural network (ANN) was applied to classify multispectral remote sensing imagery data. The classification procedure included four steps: (i) noisy training that adds minor random variations to the sampling data to make the data more representative and to reduce the training sample size; (ii) iterative or multi-tier classification that reclassifies the unclassified pixels by making a subset of training samples from the original training set, which means the neural model can focus on fewer classes; (iii) spectral channel selection based on neural network weights that can distinguish the relative importance of each channel in the classification process to simplify the ANN model; and (iv) voting rules that adjust the accuracy of classification and produce outputs of different confidence levels. The Purdue Forest, located west of Purdue University, West Lafayette, Indiana, was chosen as the test site. The 1992 Landsat thematic mapper imagery was used as the input data. High-quality airborne photographs of the same Lime period were used for the ground truth. A total of 11 land use and land cover classes were defined, including water, broadleaved forest, coniferous forest, young forest, urban and road, and six types of cropland-grassland. The experiment, indicated that the back-propagation neural network application was satisfactory in distinguishing different land cover types at US Geological Survey levels II-III. The single-tier classification reached an overall accuracy of 85%. and the multi-tier classification an overall accuracy of 95%. For the whole test, region, the final output of this study reached an overall accuracy of 87%. ?? 2005 CASI.

Biomedical literature classification using encyclopedic knowledge: a Wikipedia-based bag-of-concepts approach.

PubMed

Mouriño García, Marcos Antonio; Pérez Rodríguez, Roberto; Anido Rifón, Luis E

2015-01-01

Automatic classification of text documents into a set of categories has a lot of applications. Among those applications, the automatic classification of biomedical literature stands out as an important application for automatic document classification strategies. Biomedical staff and researchers have to deal with a lot of literature in their daily activities, so it would be useful a system that allows for accessing to documents of interest in a simple and effective way; thus, it is necessary that these documents are sorted based on some criteria-that is to say, they have to be classified. Documents to classify are usually represented following the bag-of-words (BoW) paradigm. Features are words in the text-thus suffering from synonymy and polysemy-and their weights are just based on their frequency of occurrence. This paper presents an empirical study of the efficiency of a classifier that leverages encyclopedic background knowledge-concretely Wikipedia-in order to create bag-of-concepts (BoC) representations of documents, understanding concept as "unit of meaning", and thus tackling synonymy and polysemy. Besides, the weighting of concepts is based on their semantic relevance in the text. For the evaluation of the proposal, empirical experiments have been conducted with one of the commonly used corpora for evaluating classification and retrieval of biomedical information, OHSUMED, and also with a purpose-built corpus of MEDLINE biomedical abstracts, UVigoMED. Results obtained show that the Wikipedia-based bag-of-concepts representation outperforms the classical bag-of-words representation up to 157% in the single-label classification problem and up to 100% in the multi-label problem for OHSUMED corpus, and up to 122% in the single-label classification problem and up to 155% in the multi-label problem for UVigoMED corpus.

Biomedical literature classification using encyclopedic knowledge: a Wikipedia-based bag-of-concepts approach

PubMed Central

Pérez Rodríguez, Roberto; Anido Rifón, Luis E.

2015-01-01

Automatic classification of text documents into a set of categories has a lot of applications. Among those applications, the automatic classification of biomedical literature stands out as an important application for automatic document classification strategies. Biomedical staff and researchers have to deal with a lot of literature in their daily activities, so it would be useful a system that allows for accessing to documents of interest in a simple and effective way; thus, it is necessary that these documents are sorted based on some criteria—that is to say, they have to be classified. Documents to classify are usually represented following the bag-of-words (BoW) paradigm. Features are words in the text—thus suffering from synonymy and polysemy—and their weights are just based on their frequency of occurrence. This paper presents an empirical study of the efficiency of a classifier that leverages encyclopedic background knowledge—concretely Wikipedia—in order to create bag-of-concepts (BoC) representations of documents, understanding concept as “unit of meaning”, and thus tackling synonymy and polysemy. Besides, the weighting of concepts is based on their semantic relevance in the text. For the evaluation of the proposal, empirical experiments have been conducted with one of the commonly used corpora for evaluating classification and retrieval of biomedical information, OHSUMED, and also with a purpose-built corpus of MEDLINE biomedical abstracts, UVigoMED. Results obtained show that the Wikipedia-based bag-of-concepts representation outperforms the classical bag-of-words representation up to 157% in the single-label classification problem and up to 100% in the multi-label problem for OHSUMED corpus, and up to 122% in the single-label classification problem and up to 155% in the multi-label problem for UVigoMED corpus. PMID:26468436

Design and optimal control of multi-spacecraft interferometric imaging systems

NASA Astrophysics Data System (ADS)

Chakravorty, Suman

The objective of the proposed NASA Origins mission, Planet Imager, is the high-resolution imaging of exo-solar planets and similar high resolution astronomical imaging applications. The imaging is to be accomplished through the design of multi-spacecraft interferometric imaging systems (MSIIS). In this dissertation, we study the design of MSIIS. Assuming that the ultimate goal of imaging is the correct classification of the formed images, we formulate the design problem as minimization of some resource utilization of the system subject to the constraint that the probability of misclassification of any given image is below a pre-specified level. We model the process of image formation in an MSIIS and show that the Modulation Transfer function of and the noise corrupting the synthesized optical instrument are dependent on the trajectories of the constituent spacecraft. Assuming that the final goal of imaging is the correct classification of the formed image based on a given feature (a real valued function of the image variable), and a threshold on the feature, we find conditions on the noise corrupting the measurements such that the probability of misclassification is below some pre-specified level. These conditions translate into constraints on the trajectories of the constituent spacecraft. Thus, the design problem reduces to minimizing some resource utilization of the system, while satisfying the constraints placed on the system by the imaging requirements. We study the problem of designing minimum time maneuvers for MSIIS. We transform the time minimization problem into a "painting problem". The painting problem involves painting a large disk with smaller paintbrushes (coverage disks). We show that spirals form the dominant set for the solution to the painting problem. We frame the time minimization in the subspace of spirals and obtain a bilinear program, the double pantograph problem, in the design parameters of the spiral, the spiraling rate and the angular rate. We show that the solution of this problem is given by the solution to two associated linear programs. We illustrate our results through a simulation where the banded appearance of a fictitious exo-solar planet at a distance of 8 parsecs is detected.

Comparison of LSS-IV and LISS-III+LISS-IV merged data for classification of crops

NASA Astrophysics Data System (ADS)

Hebbar, R.; Sesha Sai, M. V. R.

2014-11-01

Resourcesat-1 satellite with its unique capability of simultaneous acquisition of multispectral images at different spatial resolutions (AWiFS, LISS-III and LISS-IV MX / Mono) has immense potential for crop inventory. The present study was carried for selection of suitable LISS-IV MX band for data fusion and its evaluation for delineation different crops in a multi-cropped area. Image fusion techniques namely intensity hue saturation (IHS), principal component analysis (PCA), brovey, high pass filter (HPF) and wavelet methods were used for merging LISS-III and LISS-IV Mono data. The merged products were evaluated visually and through universal image quality index, ERGAS and classification accuracy. The study revealed that red band of LISS-IV MX data was found to be optimal band for merging with LISS-III data in terms of maintaining both spectral and spatial information and thus, closely matching with multispectral LISS-IVMX data. Among the five data fusion techniques, wavelet method was found to be superior in retaining image quality and higher classification accuracy compared to commonly used methods of IHS, PCA and Brovey. The study indicated that LISS-IV data in mono mode with wider swath of 70 km could be exploited in place of 24km LISS-IVMX data by selection of appropriate fusion techniques by acquiring monochromatic data in the red band.

Ecosystem classifications based on summer and winter conditions.

PubMed

Andrew, Margaret E; Nelson, Trisalyn A; Wulder, Michael A; Hobart, George W; Coops, Nicholas C; Farmer, Carson J Q

2013-04-01

Ecosystem classifications map an area into relatively homogenous units for environmental research, monitoring, and management. However, their effectiveness is rarely tested. Here, three classifications are (1) defined and characterized for Canada along summertime productivity (moderate-resolution imaging spectrometer fraction of absorbed photosynthetically active radiation) and wintertime snow conditions (special sensor microwave/imager snow water equivalent), independently and in combination, and (2) comparatively evaluated to determine the ability of each classification to represent the spatial and environmental patterns of alternative schemes, including the Canadian ecozone framework. All classifications depicted similar patterns across Canada, but detailed class distributions differed. Class spatial characteristics varied with environmental conditions within classifications, but were comparable between classifications. There was moderate correspondence between classifications. The strongest association was between productivity classes and ecozones. The classification along both productivity and snow balanced these two sets of variables, yielding intermediate levels of association in all pairwise comparisons. Despite relatively low spatial agreement between classifications, they successfully captured patterns of the environmental conditions underlying alternate schemes (e.g., snow classes explained variation in productivity and vice versa). The performance of ecosystem classifications and the relevance of their input variables depend on the environmental patterns and processes used for applications and evaluation. Productivity or snow regimes, as constructed here, may be desirable when summarizing patterns controlled by summer- or wintertime conditions, respectively, or of climate change responses. General purpose ecosystem classifications should include both sets of drivers. Classifications should be carefully, quantitatively, and comparatively evaluated relative to a particular application prior to their implementation as monitoring and assessment frameworks.

Super-Resolution of Plant Disease Images for the Acceleration of Image-based Phenotyping and Vigor Diagnosis in Agriculture.

PubMed

Yamamoto, Kyosuke; Togami, Takashi; Yamaguchi, Norio

2017-11-06

Unmanned aerial vehicles (UAVs or drones) are a very promising branch of technology, and they have been utilized in agriculture-in cooperation with image processing technologies-for phenotyping and vigor diagnosis. One of the problems in the utilization of UAVs for agricultural purposes is the limitation in flight time. It is necessary to fly at a high altitude to capture the maximum number of plants in the limited time available, but this reduces the spatial resolution of the captured images. In this study, we applied a super-resolution method to the low-resolution images of tomato diseases to recover detailed appearances, such as lesions on plant organs. We also conducted disease classification using high-resolution, low-resolution, and super-resolution images to evaluate the effectiveness of super-resolution methods in disease classification. Our results indicated that the super-resolution method outperformed conventional image scaling methods in spatial resolution enhancement of tomato disease images. The results of disease classification showed that the accuracy attained was also better by a large margin with super-resolution images than with low-resolution images. These results indicated that our approach not only recovered the information lost in low-resolution images, but also exerted a beneficial influence on further image analysis. The proposed approach will accelerate image-based phenotyping and vigor diagnosis in the field, because it not only saves time to capture images of a crop in a cultivation field but also secures the accuracy of these images for further analysis.

Super-Resolution of Plant Disease Images for the Acceleration of Image-based Phenotyping and Vigor Diagnosis in Agriculture

PubMed Central

Togami, Takashi; Yamaguchi, Norio

2017-01-01

Unmanned aerial vehicles (UAVs or drones) are a very promising branch of technology, and they have been utilized in agriculture—in cooperation with image processing technologies—for phenotyping and vigor diagnosis. One of the problems in the utilization of UAVs for agricultural purposes is the limitation in flight time. It is necessary to fly at a high altitude to capture the maximum number of plants in the limited time available, but this reduces the spatial resolution of the captured images. In this study, we applied a super-resolution method to the low-resolution images of tomato diseases to recover detailed appearances, such as lesions on plant organs. We also conducted disease classification using high-resolution, low-resolution, and super-resolution images to evaluate the effectiveness of super-resolution methods in disease classification. Our results indicated that the super-resolution method outperformed conventional image scaling methods in spatial resolution enhancement of tomato disease images. The results of disease classification showed that the accuracy attained was also better by a large margin with super-resolution images than with low-resolution images. These results indicated that our approach not only recovered the information lost in low-resolution images, but also exerted a beneficial influence on further image analysis. The proposed approach will accelerate image-based phenotyping and vigor diagnosis in the field, because it not only saves time to capture images of a crop in a cultivation field but also secures the accuracy of these images for further analysis. PMID:29113104

Raffaello Multi-Purpose Logistics Module (MPLM) in the Endeavour payload bay prior to docking

NASA Image and Video Library

2001-04-21

ISS002-E-5815 (21 April 2001) --- The Raffaello Multi-Purpose Logistics Module (MPLM), built by the Italian Space Agency (ASI), sits in its berthed position in the cargo bay of the Space Shuttle Endeavour as the STS-100 crew eases the vehicle close to the International Space Station (ISS) for docking. The image was recorded with a digital still camera by one of the Expedition Two crew members aboard the Station.

Grouped gene selection and multi-classification of acute leukemia via new regularized multinomial regression.

PubMed

Li, Juntao; Wang, Yanyan; Jiang, Tao; Xiao, Huimin; Song, Xuekun

2018-05-09

Diagnosing acute leukemia is the necessary prerequisite to treating it. Multi-classification on the gene expression data of acute leukemia is help for diagnosing it which contains B-cell acute lymphoblastic leukemia (BALL), T-cell acute lymphoblastic leukemia (TALL) and acute myeloid leukemia (AML). However, selecting cancer-causing genes is a challenging problem in performing multi-classification. In this paper, weighted gene co-expression networks are employed to divide the genes into groups. Based on the dividing groups, a new regularized multinomial regression with overlapping group lasso penalty (MROGL) has been presented to simultaneously perform multi-classification and select gene groups. By implementing this method on three-class acute leukemia data, the grouped genes which work synergistically are identified, and the overlapped genes shared by different groups are also highlighted. Moreover, MROGL outperforms other five methods on multi-classification accuracy. Copyright © 2017. Published by Elsevier B.V.

A Hierarchical Object-oriented Urban Land Cover Classification Using WorldView-2 Imagery and Airborne LiDAR data

NASA Astrophysics Data System (ADS)

Wu, M. F.; Sun, Z. C.; Yang, B.; Yu, S. S.

2016-11-01

In order to reduce the “salt and pepper” in pixel-based urban land cover classification and expand the application of fusion of multi-source data in the field of urban remote sensing, WorldView-2 imagery and airborne Light Detection and Ranging (LiDAR) data were used to improve the classification of urban land cover. An approach of object- oriented hierarchical classification was proposed in our study. The processing of proposed method consisted of two hierarchies. (1) In the first hierarchy, LiDAR Normalized Digital Surface Model (nDSM) image was segmented to objects. The NDVI, Costal Blue and nDSM thresholds were set for extracting building objects. (2) In the second hierarchy, after removing building objects, WorldView-2 fused imagery was obtained by Haze-ratio-based (HR) fusion, and was segmented. A SVM classifier was applied to generate road/parking lot, vegetation and bare soil objects. (3) Trees and grasslands were split based on an nDSM threshold (2.4 meter). The results showed that compared with pixel-based and non-hierarchical object-oriented approach, proposed method provided a better performance of urban land cover classification, the overall accuracy (OA) and overall kappa (OK) improved up to 92.75% and 0.90. Furthermore, proposed method reduced “salt and pepper” in pixel-based classification, improved the extraction accuracy of buildings based on LiDAR nDSM image segmentation, and reduced the confusion between trees and grasslands through setting nDSM threshold.

A support vector machine classifier reduces interscanner variation in the HRCT classification of regional disease pattern in diffuse lung disease: Comparison to a Bayesian classifier

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chang, Yongjun; Lim, Jonghyuck; Kim, Namkug

2013-05-15

Purpose: To investigate the effect of using different computed tomography (CT) scanners on the accuracy of high-resolution CT (HRCT) images in classifying regional disease patterns in patients with diffuse lung disease, support vector machine (SVM) and Bayesian classifiers were applied to multicenter data. Methods: Two experienced radiologists marked sets of 600 rectangular 20 Multiplication-Sign 20 pixel regions of interest (ROIs) on HRCT images obtained from two scanners (GE and Siemens), including 100 ROIs for each of local patterns of lungs-normal lung and five of regional pulmonary disease patterns (ground-glass opacity, reticular opacity, honeycombing, emphysema, and consolidation). Each ROI was assessedmore » using 22 quantitative features belonging to one of the following descriptors: histogram, gradient, run-length, gray level co-occurrence matrix, low-attenuation area cluster, and top-hat transform. For automatic classification, a Bayesian classifier and a SVM classifier were compared under three different conditions. First, classification accuracies were estimated using data from each scanner. Next, data from the GE and Siemens scanners were used for training and testing, respectively, and vice versa. Finally, all ROI data were integrated regardless of the scanner type and were then trained and tested together. All experiments were performed based on forward feature selection and fivefold cross-validation with 20 repetitions. Results: For each scanner, better classification accuracies were achieved with the SVM classifier than the Bayesian classifier (92% and 82%, respectively, for the GE scanner; and 92% and 86%, respectively, for the Siemens scanner). The classification accuracies were 82%/72% for training with GE data and testing with Siemens data, and 79%/72% for the reverse. The use of training and test data obtained from the HRCT images of different scanners lowered the classification accuracy compared to the use of HRCT images from the same scanner. For integrated ROI data obtained from both scanners, the classification accuracies with the SVM and Bayesian classifiers were 92% and 77%, respectively. The selected features resulting from the classification process differed by scanner, with more features included for the classification of the integrated HRCT data than for the classification of the HRCT data from each scanner. For the integrated data, consisting of HRCT images of both scanners, the classification accuracy based on the SVM was statistically similar to the accuracy of the data obtained from each scanner. However, the classification accuracy of the integrated data using the Bayesian classifier was significantly lower than the classification accuracy of the ROI data of each scanner. Conclusions: The use of an integrated dataset along with a SVM classifier rather than a Bayesian classifier has benefits in terms of the classification accuracy of HRCT images acquired with more than one scanner. This finding is of relevance in studies involving large number of images, as is the case in a multicenter trial with different scanners.« less

Prostate segmentation by sparse representation based classification.

PubMed

Gao, Yaozong; Liao, Shu; Shen, Dinggang

2012-10-01

The segmentation of prostate in CT images is of essential importance to external beam radiotherapy, which is one of the major treatments for prostate cancer nowadays. During the radiotherapy, the prostate is radiated by high-energy x rays from different directions. In order to maximize the dose to the cancer and minimize the dose to the surrounding healthy tissues (e.g., bladder and rectum), the prostate in the new treatment image needs to be accurately localized. Therefore, the effectiveness and efficiency of external beam radiotherapy highly depend on the accurate localization of the prostate. However, due to the low contrast of the prostate with its surrounding tissues (e.g., bladder), the unpredicted prostate motion, and the large appearance variations across different treatment days, it is challenging to segment the prostate in CT images. In this paper, the authors present a novel classification based segmentation method to address these problems. To segment the prostate, the proposed method first uses sparse representation based classification (SRC) to enhance the prostate in CT images by pixel-wise classification, in order to overcome the limitation of poor contrast of the prostate images. Then, based on the classification results, previous segmented prostates of the same patient are used as patient-specific atlases to align onto the current treatment image and the majority voting strategy is finally adopted to segment the prostate. In order to address the limitations of the traditional SRC in pixel-wise classification, especially for the purpose of segmentation, the authors extend SRC from the following four aspects: (1) A discriminant subdictionary learning method is proposed to learn a discriminant and compact representation of training samples for each class so that the discriminant power of SRC can be increased and also SRC can be applied to the large-scale pixel-wise classification. (2) The L1 regularized sparse coding is replaced by the elastic net in order to obtain a smooth and clear prostate boundary in the classification result. (3) Residue-based linear regression is incorporated to improve the classification performance and to extend SRC from hard classification to soft classification. (4) Iterative SRC is proposed by using context information to iteratively refine the classification results. The proposed method has been comprehensively evaluated on a dataset consisting of 330 CT images from 24 patients. The effectiveness of the extended SRC has been validated by comparing it with the traditional SRC based on the proposed four extensions. The experimental results show that our extended SRC can obtain not only more accurate classification results but also smoother and clearer prostate boundary than the traditional SRC. Besides, the comparison with other five state-of-the-art prostate segmentation methods indicates that our method can achieve better performance than other methods under comparison. The authors have proposed a novel prostate segmentation method based on the sparse representation based classification, which can achieve considerably accurate segmentation results in CT prostate segmentation.

SU-F-J-183: Interior Region-Of-Interest Tomography by Using Inverse Geometry System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kim, K; Kim, D; Kang, S

2016-06-15

Purpose: The inverse geometry computed tomography (IGCT) composed of multiple source and small size detector has several merits such as reduction of scatter effect and large volumetric imaging within one rotation without cone-beam artifact, compared to conventional cone-beam computed tomography (CBCT). By using this multi-source characteristics, we intend to present a selective and multiple interior region-of-interest (ROI) imaging method by using a designed source on-off sequence of IGCT. Methods: All of the IGCT sources are operated one by one sequentially, and each projection in the shape of narrow cone-beam covers its own partial volume of full field of view (FOV)more » determined from system geometry. Thus, through controlling multi source operation, limited irradiation within ROI is possible and selective radon space data for ROI imaging can be acquired without additional X-ray filtration. With this feature, we designed a source on-off sequence for multi ROI-IGCT imaging, and projections of ROI-IGCT were generated by using the on-off sequence. Multi ROI-IGCT images were reconstructed by using filtered back-projection algorithm. All these imaging process of our study has been performed by utilizing digital phantom and patient CT data. ROI-IGCT images of the phantom were compared to CBCT image and the phantom data for the image quality evaluation. Results: Image quality of ROI-IGCT was comparable to that of CBCT. However, the distal axial-plane from the FOV center, large cone-angle region, ROI-IGCT showed uniform image quality without significant cone-beam artifact contrary to CBCT. Conclusion: ROI-IGCT showed comparable image quality and has the capability to provide multi ROI image within a rotation. Projection of ROI-IGCT is performed by selective irradiation, hence unnecessary imaging dose to non-interest region can be reduced. In this regard, it seems to be useful for diagnostic or image guidance purpose in radiotherapy such as low dose target localization and patient alignment. This research was supported by the Mid-career Researcher Program through NRF funded by the Ministry of Science, ICT & Future Planning of Korea (NRF-2014R1A2A1A10050270) and by the Radiation Technology R&D program through the National Research Foundation of Korea funded by the Ministry of Science, ICT & Future Planning (No. 2013M2A2A7038291)« less

Pathos & Ethos: Emotions and Willingness to Pay for Tobacco Products

PubMed Central

Chakravarti, Amitav; Ortoleva, Pietro; Gaskell, George; Ivchenko, Andriy; Lupiáñez-Villanueva, Francisco; Mureddu, Francesco; Rudisill, Caroline

2015-01-01

In this article we use data from a multi-country Randomized Control Trial study on the effect of anti-tobacco pictorial warnings on an individual’s emotions and behavior. By exploiting the exogenous variations of images as an instrument, we are able to identify the effect of emotional responses. We use a range of outcome variables, from cognitive (risk perception and depth of processing) to behavioural (willingness to buy and willingness to pay). Our findings suggest that the odds of buying a tobacco product can be reduced by 80% if the negative affect elicited by the images increases by one standard deviation. More importantly from a public policy perspective, not all emotions behave alike, as eliciting shame, anger, or distress proves more effective in reducing smoking than fear and disgust. JEL Classification C26, C99, D03, I18 PsycINFO classification 2360; 3920 PMID:26485272

Computer-assisted quantification of the skull deformity for craniosynostosis from 3D head CT images using morphological descriptor and hierarchical classification

NASA Astrophysics Data System (ADS)

Lee, Min Jin; Hong, Helen; Shim, Kyu Won; Kim, Yong Oock

2017-03-01

This paper proposes morphological descriptors representing the degree of skull deformity for craniosynostosis in head CT images and a hierarchical classifier model distinguishing among normal and different types of craniosynostosis. First, to compare deformity surface model with mean normal surface model, mean normal surface models are generated for each age range and the mean normal surface model is deformed to the deformity surface model via multi-level threestage registration. Second, four shape features including local distance and area ratio indices are extracted in each five cranial bone. Finally, hierarchical SVM classifier is proposed to distinguish between the normal and deformity. As a result, the proposed method showed improved classification results compared to traditional cranial index. Our method can be used for the early diagnosis, surgical planning and postsurgical assessment of craniosynostosis as well as quantitative analysis of skull deformity.

UAV-based urban structural damage assessment using object-based image analysis and semantic reasoning

NASA Astrophysics Data System (ADS)

Fernandez Galarreta, J.; Kerle, N.; Gerke, M.

2015-06-01

Structural damage assessment is critical after disasters but remains a challenge. Many studies have explored the potential of remote sensing data, but limitations of vertical data persist. Oblique imagery has been identified as more useful, though the multi-angle imagery also adds a new dimension of complexity. This paper addresses damage assessment based on multi-perspective, overlapping, very high resolution oblique images obtained with unmanned aerial vehicles (UAVs). 3-D point-cloud assessment for the entire building is combined with detailed object-based image analysis (OBIA) of façades and roofs. This research focuses not on automatic damage assessment, but on creating a methodology that supports the often ambiguous classification of intermediate damage levels, aiming at producing comprehensive per-building damage scores. We identify completely damaged structures in the 3-D point cloud, and for all other cases provide the OBIA-based damage indicators to be used as auxiliary information by damage analysts. The results demonstrate the usability of the 3-D point-cloud data to identify major damage features. Also the UAV-derived and OBIA-processed oblique images are shown to be a suitable basis for the identification of detailed damage features on façades and roofs. Finally, we also demonstrate the possibility of aggregating the multi-perspective damage information at building level.

Data Mining Research with the LSST

NASA Astrophysics Data System (ADS)

Borne, Kirk D.; Strauss, M. A.; Tyson, J. A.

2007-12-01

The LSST catalog database will exceed 10 petabytes, comprising several hundred attributes for 5 billion galaxies, 10 billion stars, and over 1 billion variable sources (optical variables, transients, or moving objects), extracted from over 20,000 square degrees of deep imaging in 5 passbands with thorough time domain coverage: 1000 visits over the 10-year LSST survey lifetime. The opportunities are enormous for novel scientific discoveries within this rich time-domain ultra-deep multi-band survey database. Data Mining, Machine Learning, and Knowledge Discovery research opportunities with the LSST are now under study, with a potential for new collaborations to develop to contribute to these investigations. We will describe features of the LSST science database that are amenable to scientific data mining, object classification, outlier identification, anomaly detection, image quality assurance, and survey science validation. We also give some illustrative examples of current scientific data mining research in astronomy, and point out where new research is needed. In particular, the data mining research community will need to address several issues in the coming years as we prepare for the LSST data deluge. The data mining research agenda includes: scalability (at petabytes scales) of existing machine learning and data mining algorithms; development of grid-enabled parallel data mining algorithms; designing a robust system for brokering classifications from the LSST event pipeline (which may produce 10,000 or more event alerts per night); multi-resolution methods for exploration of petascale databases; visual data mining algorithms for visual exploration of the data; indexing of multi-attribute multi-dimensional astronomical databases (beyond RA-Dec spatial indexing) for rapid querying of petabyte databases; and more. Finally, we will identify opportunities for synergistic collaboration between the data mining research group and the LSST Data Management and Science Collaboration teams.

Differences in neural responses to ipsilateral stimuli in wide-view fields between face- and house-selective areas

PubMed Central

Li, Ting; Niu, Yan; Xiang, Jie; Cheng, Junjie; Liu, Bo; Zhang, Hui; Yan, Tianyi; Kanazawa, Susumu; Wu, Jinglong

2018-01-01

Category-selective brain areas exhibit varying levels of neural activity to ipsilaterally presented stimuli. However, in face- and house-selective areas, the neural responses evoked by ipsilateral stimuli in the peripheral visual field remain unclear. In this study, we displayed face and house images using a wide-view visual presentation system while performing functional magnetic resonance imaging (fMRI). The face-selective areas (fusiform face area (FFA) and occipital face area (OFA)) exhibited intense neural responses to ipsilaterally presented images, whereas the house-selective areas (parahippocampal place area (PPA) and transverse occipital sulcus (TOS)) exhibited substantially smaller and even negative neural responses to the ipsilaterally presented images. We also found that the category preferences of the contralateral and ipsilateral neural responses were similar. Interestingly, the face- and house-selective areas exhibited neural responses to ipsilateral images that were smaller than the responses to the contralateral images. Multi-voxel pattern analysis (MVPA) was implemented to evaluate the difference between the contralateral and ipsilateral responses. The classification accuracies were much greater than those expected by chance. The classification accuracies in the FFA were smaller than those in the PPA and TOS. The closer eccentricities elicited greater classification accuracies in the PPA and TOS. We propose that these ipsilateral neural responses might be interpreted by interhemispheric communication through intrahemispheric connectivity of white matter connection and interhemispheric connectivity via the corpus callosum and occipital white matter connection. Furthermore, the PPA and TOS likely have weaker interhemispheric communication than the FFA and OFA, particularly in the peripheral visual field. PMID:29451872

Identification of cortex in magnetic resonance images

NASA Astrophysics Data System (ADS)

VanMeter, John W.; Sandon, Peter A.

1992-06-01

The overall goal of the work described here is to make available to the neurosurgeon in the operating room an on-line, three-dimensional, anatomically labeled model of the patient brain, based on pre-operative magnetic resonance (MR) images. A stereotactic operating microscope is currently in experimental use, which allows structures that have been manually identified in MR images to be made available on-line. We have been working to enhance this system by combining image processing techniques applied to the MR data with an anatomically labeled 3-D brain model developed from the Talairach and Tournoux atlas. Here we describe the process of identifying cerebral cortex in the patient MR images. MR images of brain tissue are reasonably well described by material mixture models, which identify each pixel as corresponding to one of a small number of materials, or as being a composite of two materials. Our classification algorithm consists of three steps. First, we apply hierarchical, adaptive grayscale adjustments to correct for nonlinearities in the MR sensor. The goal of this preprocessing step, based on the material mixture model, is to make the grayscale distribution of each tissue type constant across the entire image. Next, we perform an initial classification of all tissue types according to gray level. We have used a sum of Gaussian's approximation of the histogram to perform this classification. Finally, we identify pixels corresponding to cortex, by taking into account the spatial patterns characteristic of this tissue. For this purpose, we use a set of matched filters to identify image locations having the appropriate configuration of gray matter (cortex), cerebrospinal fluid and white matter, as determined by the previous classification step.

Motion immune diffusion imaging using augmented MUSE (AMUSE) for high-resolution multi-shot EPI

PubMed Central

Guhaniyogi, Shayan; Chu, Mei-Lan; Chang, Hing-Chiu; Song, Allen W.; Chen, Nan-kuei

2015-01-01

Purpose To develop new techniques for reducing the effects of microscopic and macroscopic patient motion in diffusion imaging acquired with high-resolution multi-shot EPI. Theory The previously reported Multiplexed Sensitivity Encoding (MUSE) algorithm is extended to account for macroscopic pixel misregistrations as well as motion-induced phase errors in a technique called Augmented MUSE (AMUSE). Furthermore, to obtain more accurate quantitative DTI measures in the presence of subject motion, we also account for the altered diffusion encoding among shots arising from macroscopic motion. Methods MUSE and AMUSE were evaluated on simulated and in vivo motion-corrupted multi-shot diffusion data. Evaluations were made both on the resulting imaging quality and estimated diffusion tensor metrics. Results AMUSE was found to reduce image blurring resulting from macroscopic subject motion compared to MUSE, but yielded inaccurate tensor estimations when neglecting the altered diffusion encoding. Including the altered diffusion encoding in AMUSE produced better estimations of diffusion tensors. Conclusion The use of AMUSE allows for improved image quality and diffusion tensor accuracy in the presence of macroscopic subject motion during multi-shot diffusion imaging. These techniques should facilitate future high-resolution diffusion imaging. PMID:25762216

Cell segmentation in phase contrast microscopy images via semi-supervised classification over optics-related features.

PubMed

Su, Hang; Yin, Zhaozheng; Huh, Seungil; Kanade, Takeo

2013-10-01

Phase-contrast microscopy is one of the most common and convenient imaging modalities to observe long-term multi-cellular processes, which generates images by the interference of lights passing through transparent specimens and background medium with different retarded phases. Despite many years of study, computer-aided phase contrast microscopy analysis on cell behavior is challenged by image qualities and artifacts caused by phase contrast optics. Addressing the unsolved challenges, the authors propose (1) a phase contrast microscopy image restoration method that produces phase retardation features, which are intrinsic features of phase contrast microscopy, and (2) a semi-supervised learning based algorithm for cell segmentation, which is a fundamental task for various cell behavior analysis. Specifically, the image formation process of phase contrast microscopy images is first computationally modeled with a dictionary of diffraction patterns; as a result, each pixel of a phase contrast microscopy image is represented by a linear combination of the bases, which we call phase retardation features. Images are then partitioned into phase-homogeneous atoms by clustering neighboring pixels with similar phase retardation features. Consequently, cell segmentation is performed via a semi-supervised classification technique over the phase-homogeneous atoms. Experiments demonstrate that the proposed approach produces quality segmentation of individual cells and outperforms previous approaches. Copyright © 2013 Elsevier B.V. All rights reserved.

Interleaved diffusion-weighted EPI improved by adaptive partial-Fourier and multi-band multiplexed sensitivity-encoding reconstruction

PubMed Central

Chang, Hing-Chiu; Guhaniyogi, Shayan; Chen, Nan-kuei

2014-01-01

Purpose We report a series of techniques to reliably eliminate artifacts in interleaved echo-planar imaging (EPI) based diffusion weighted imaging (DWI). Methods First, we integrate the previously reported multiplexed sensitivity encoding (MUSE) algorithm with a new adaptive Homodyne partial-Fourier reconstruction algorithm, so that images reconstructed from interleaved partial-Fourier DWI data are free from artifacts even in the presence of either a) motion-induced k-space energy peak displacement, or b) susceptibility field gradient induced fast phase changes. Second, we generalize the previously reported single-band MUSE framework to multi-band MUSE, so that both through-plane and in-plane aliasing artifacts in multi-band multi-shot interleaved DWI data can be effectively eliminated. Results The new adaptive Homodyne-MUSE reconstruction algorithm reliably produces high-quality and high-resolution DWI, eliminating residual artifacts in images reconstructed with previously reported methods. Furthermore, the generalized MUSE algorithm is compatible with multi-band and high-throughput DWI. Conclusion The integration of the multi-band and adaptive Homodyne-MUSE algorithms significantly improves the spatial-resolution, image quality, and scan throughput of interleaved DWI. We expect that the reported reconstruction framework will play an important role in enabling high-resolution DWI for both neuroscience research and clinical uses. PMID:24925000

Field-based rice classification in Wuhua county through integration of multi-temporal Sentinel-1A and Landsat-8 OLI data

NASA Astrophysics Data System (ADS)

Yang, Huijin; Pan, Bin; Wu, Wenfu; Tai, Jianhao

2018-07-01

Rice is one of the most important cereals in the world. With the change of agricultural land, it is urgently necessary to update information about rice planting areas. This study aims to map rice planting areas with a field-based approach through the integration of multi-temporal Sentinel-1A and Landsat-8 OLI data in Wuhua County of South China where has many basins and mountains. This paper, using multi-temporal SAR and optical images, proposes a methodology for the identification of rice-planting areas. This methodology mainly consists of SSM applied to time series SAR images for the calculation of a similarity measure, image segmentation process applied to the pan-sharpened optical image for the searching of homogenous objects, and the integration of SAR and optical data for the elimination of some speckles. The study compares the per-pixel approach with the per-field approach and the results show that the highest accuracy (91.38%) based on the field-based approach is 1.18% slightly higher than that based on the pixel-based approach for VH polarization, which is brought by eliminating speckle noise through comparing the rice maps of these two approaches. Therefore, the integration of Sentinel-1A and Landsat-8 OLI images with a field-based approach has great potential for mapping rice or other crops' areas.

Multi-Temporal Land Cover Classification with Long Short-Term Memory Neural Networks

NASA Astrophysics Data System (ADS)

Rußwurm, M.; Körner, M.

2017-05-01

Land cover classification (LCC) is a central and wide field of research in earth observation and has already put forth a variety of classification techniques. Many approaches are based on classification techniques considering observation at certain points in time. However, some land cover classes, such as crops, change their spectral characteristics due to environmental influences and can thus not be monitored effectively with classical mono-temporal approaches. Nevertheless, these temporal observations should be utilized to benefit the classification process. After extensive research has been conducted on modeling temporal dynamics by spectro-temporal profiles using vegetation indices, we propose a deep learning approach to utilize these temporal characteristics for classification tasks. In this work, we show how long short-term memory (LSTM) neural networks can be employed for crop identification purposes with SENTINEL 2A observations from large study areas and label information provided by local authorities. We compare these temporal neural network models, i.e., LSTM and recurrent neural network (RNN), with a classical non-temporal convolutional neural network (CNN) model and an additional support vector machine (SVM) baseline. With our rather straightforward LSTM variant, we exceeded state-of-the-art classification performance, thus opening promising potential for further research.

Multi-label classification of chronically ill patients with bag of words and supervised dimensionality reduction algorithms.

PubMed

Bromuri, Stefano; Zufferey, Damien; Hennebert, Jean; Schumacher, Michael

2014-10-01

This research is motivated by the issue of classifying illnesses of chronically ill patients for decision support in clinical settings. Our main objective is to propose multi-label classification of multivariate time series contained in medical records of chronically ill patients, by means of quantization methods, such as bag of words (BoW), and multi-label classification algorithms. Our second objective is to compare supervised dimensionality reduction techniques to state-of-the-art multi-label classification algorithms. The hypothesis is that kernel methods and locality preserving projections make such algorithms good candidates to study multi-label medical time series. We combine BoW and supervised dimensionality reduction algorithms to perform multi-label classification on health records of chronically ill patients. The considered algorithms are compared with state-of-the-art multi-label classifiers in two real world datasets. Portavita dataset contains 525 diabetes type 2 (DT2) patients, with co-morbidities of DT2 such as hypertension, dyslipidemia, and microvascular or macrovascular issues. MIMIC II dataset contains 2635 patients affected by thyroid disease, diabetes mellitus, lipoid metabolism disease, fluid electrolyte disease, hypertensive disease, thrombosis, hypotension, chronic obstructive pulmonary disease (COPD), liver disease and kidney disease. The algorithms are evaluated using multi-label evaluation metrics such as hamming loss, one error, coverage, ranking loss, and average precision. Non-linear dimensionality reduction approaches behave well on medical time series quantized using the BoW algorithm, with results comparable to state-of-the-art multi-label classification algorithms. Chaining the projected features has a positive impact on the performance of the algorithm with respect to pure binary relevance approaches. The evaluation highlights the feasibility of representing medical health records using the BoW for multi-label classification tasks. The study also highlights that dimensionality reduction algorithms based on kernel methods, locality preserving projections or both are good candidates to deal with multi-label classification tasks in medical time series with many missing values and high label density. Copyright © 2014 Elsevier Inc. All rights reserved.

Multi-mode Intravascular RF Coil for MRI-guided Interventions

PubMed Central

Kurpad, Krishna N.; Unal, Orhan

2011-01-01

Purpose To demonstrate the feasibility of using a single intravascular RF probe connected to the external MRI system via a single coaxial cable to perform active tip tracking and catheter visualization, and high SNR intravascular imaging. Materials and Methods A multi-mode intravascular RF coil was constructed on a 6F balloon catheter and interfaced to a 1.5T MRI scanner via a decoupling circuit. Bench measurements of coil impedances were followed by imaging experiments in saline and phantoms. Results The multi-mode coil behaves as an inductively-coupled transmit coil. Forward looking capability of 6mm is measured. Greater than 3-fold increase in SNR compared to conventional imaging using optimized external coil is demonstrated. Simultaneous active tip tracking and catheter visualization is demonstrated. Conclusions It is feasible to perform 1) active tip tracking, 2) catheter visualization, and 3) high SNR imaging using a single multi-mode intravascular RF coil that is connected to the external system via a single coaxial cable. PMID:21448969

Examining Brain Morphometry Associated with Self-Esteem in Young Adults Using Multilevel-ROI-Features-Based Classification Method

PubMed Central

Peng, Bo; Lu, Jieru; Saxena, Aditya; Zhou, Zhiyong; Zhang, Tao; Wang, Suhong; Dai, Yakang

2017-01-01

Purpose: This study is to exam self-esteem related brain morphometry on brain magnetic resonance (MR) images using multilevel-features-based classification method. Method: The multilevel region of interest (ROI) features consist of two types of features: (i) ROI features, which include gray matter volume, white matter volume, cerebrospinal fluid volume, cortical thickness, and cortical surface area, and (ii) similarity features, which are based on similarity calculation of cortical thickness between ROIs. For each feature type, a hybrid feature selection method, comprising of filter-based and wrapper-based algorithms, is used to select the most discriminating features. ROI features and similarity features are integrated by using multi-kernel support vector machines (SVMs) with appropriate weighting factor. Results: The classification performance is improved by using multilevel ROI features with an accuracy of 96.66%, a specificity of 96.62%, and a sensitivity of 95.67%. The most discriminating ROI features that are related to self-esteem spread over occipital lobe, frontal lobe, parietal lobe, limbic lobe, temporal lobe, and central region, mainly involving white matter and cortical thickness. The most discriminating similarity features are distributed in both the right and left hemisphere, including frontal lobe, occipital lobe, limbic lobe, parietal lobe, and central region, which conveys information of structural connections between different brain regions. Conclusion: By using ROI features and similarity features to exam self-esteem related brain morphometry, this paper provides a pilot evidence that self-esteem is linked to specific ROIs and structural connections between different brain regions. PMID:28588470

Examining Brain Morphometry Associated with Self-Esteem in Young Adults Using Multilevel-ROI-Features-Based Classification Method.

PubMed

Peng, Bo; Lu, Jieru; Saxena, Aditya; Zhou, Zhiyong; Zhang, Tao; Wang, Suhong; Dai, Yakang

2017-01-01

Purpose: This study is to exam self-esteem related brain morphometry on brain magnetic resonance (MR) images using multilevel-features-based classification method. Method: The multilevel region of interest (ROI) features consist of two types of features: (i) ROI features, which include gray matter volume, white matter volume, cerebrospinal fluid volume, cortical thickness, and cortical surface area, and (ii) similarity features, which are based on similarity calculation of cortical thickness between ROIs. For each feature type, a hybrid feature selection method, comprising of filter-based and wrapper-based algorithms, is used to select the most discriminating features. ROI features and similarity features are integrated by using multi-kernel support vector machines (SVMs) with appropriate weighting factor. Results: The classification performance is improved by using multilevel ROI features with an accuracy of 96.66%, a specificity of 96.62%, and a sensitivity of 95.67%. The most discriminating ROI features that are related to self-esteem spread over occipital lobe, frontal lobe, parietal lobe, limbic lobe, temporal lobe, and central region, mainly involving white matter and cortical thickness. The most discriminating similarity features are distributed in both the right and left hemisphere, including frontal lobe, occipital lobe, limbic lobe, parietal lobe, and central region, which conveys information of structural connections between different brain regions. Conclusion: By using ROI features and similarity features to exam self-esteem related brain morphometry, this paper provides a pilot evidence that self-esteem is linked to specific ROIs and structural connections between different brain regions.

Point spread function based classification of regions for linear digital tomosynthesis

NASA Astrophysics Data System (ADS)

Israni, Kenny; Avinash, Gopal; Li, Baojun

2007-03-01

In digital tomosynthesis, one of the limitations is the presence of out-of-plane blur due to the limited angle acquisition. The point spread function (PSF) characterizes blur in the imaging volume, and is shift-variant in tomosynthesis. The purpose of this research is to classify the tomosynthesis imaging volume into four different categories based on PSF-driven focus criteria. We considered linear tomosynthesis geometry and simple back projection algorithm for reconstruction. The three-dimensional PSF at every pixel in the imaging volume was determined. Intensity profiles were computed for every pixel by integrating the PSF-weighted intensities contained within the line segment defined by the PSF, at each slice. Classification rules based on these intensity profiles were used to categorize image regions. At background and low-frequency pixels, the derived intensity profiles were flat curves with relatively low and high maximum intensities respectively. At in-focus pixels, the maximum intensity of the profiles coincided with the PSF-weighted intensity of the pixel. At out-of-focus pixels, the PSF-weighted intensity of the pixel was always less than the maximum intensity of the profile. We validated our method using human observer classified regions as gold standard. Based on the computed and manual classifications, the mean sensitivity and specificity of the algorithm were 77+/-8.44% and 91+/-4.13% respectively (t=-0.64, p=0.56, DF=4). Such a classification algorithm may assist in mitigating out-of-focus blur from tomosynthesis image slices.

Multi-Agent Information Classification Using Dynamic Acquaintance Lists.

ERIC Educational Resources Information Center

Mukhopadhyay, Snehasis; Peng, Shengquan; Raje, Rajeev; Palakal, Mathew; Mostafa, Javed

2003-01-01

Discussion of automated information services focuses on information classification and collaborative agents, i.e. intelligent computer programs. Highlights include multi-agent systems; distributed artificial intelligence; thesauri; document representation and classification; agent modeling; acquaintances, or remote agents discovered through…

Information Extraction of High Resolution Remote Sensing Images Based on the Calculation of Optimal Segmentation Parameters

PubMed Central

Zhu, Hongchun; Cai, Lijie; Liu, Haiying; Huang, Wei

2016-01-01

Multi-scale image segmentation and the selection of optimal segmentation parameters are the key processes in the object-oriented information extraction of high-resolution remote sensing images. The accuracy of remote sensing special subject information depends on this extraction. On the basis of WorldView-2 high-resolution data, the optimal segmentation parameters methodof object-oriented image segmentation and high-resolution image information extraction, the following processes were conducted in this study. Firstly, the best combination of the bands and weights was determined for the information extraction of high-resolution remote sensing image. An improved weighted mean-variance method was proposed andused to calculatethe optimal segmentation scale. Thereafter, the best shape factor parameter and compact factor parameters were computed with the use of the control variables and the combination of the heterogeneity and homogeneity indexes. Different types of image segmentation parameters were obtained according to the surface features. The high-resolution remote sensing images were multi-scale segmented with the optimal segmentation parameters. Ahierarchical network structure was established by setting the information extraction rules to achieve object-oriented information extraction. This study presents an effective and practical method that can explain expert input judgment by reproducible quantitative measurements. Furthermore the results of this procedure may be incorporated into a classification scheme. PMID:27362762

Information Extraction of High Resolution Remote Sensing Images Based on the Calculation of Optimal Segmentation Parameters.

PubMed

Zhu, Hongchun; Cai, Lijie; Liu, Haiying; Huang, Wei

2016-01-01

Multi-scale image segmentation and the selection of optimal segmentation parameters are the key processes in the object-oriented information extraction of high-resolution remote sensing images. The accuracy of remote sensing special subject information depends on this extraction. On the basis of WorldView-2 high-resolution data, the optimal segmentation parameters methodof object-oriented image segmentation and high-resolution image information extraction, the following processes were conducted in this study. Firstly, the best combination of the bands and weights was determined for the information extraction of high-resolution remote sensing image. An improved weighted mean-variance method was proposed andused to calculatethe optimal segmentation scale. Thereafter, the best shape factor parameter and compact factor parameters were computed with the use of the control variables and the combination of the heterogeneity and homogeneity indexes. Different types of image segmentation parameters were obtained according to the surface features. The high-resolution remote sensing images were multi-scale segmented with the optimal segmentation parameters. Ahierarchical network structure was established by setting the information extraction rules to achieve object-oriented information extraction. This study presents an effective and practical method that can explain expert input judgment by reproducible quantitative measurements. Furthermore the results of this procedure may be incorporated into a classification scheme.

Extreme Sparse Multinomial Logistic Regression: A Fast and Robust Framework for Hyperspectral Image Classification

NASA Astrophysics Data System (ADS)

Cao, Faxian; Yang, Zhijing; Ren, Jinchang; Ling, Wing-Kuen; Zhao, Huimin; Marshall, Stephen

2017-12-01

Although the sparse multinomial logistic regression (SMLR) has provided a useful tool for sparse classification, it suffers from inefficacy in dealing with high dimensional features and manually set initial regressor values. This has significantly constrained its applications for hyperspectral image (HSI) classification. In order to tackle these two drawbacks, an extreme sparse multinomial logistic regression (ESMLR) is proposed for effective classification of HSI. First, the HSI dataset is projected to a new feature space with randomly generated weight and bias. Second, an optimization model is established by the Lagrange multiplier method and the dual principle to automatically determine a good initial regressor for SMLR via minimizing the training error and the regressor value. Furthermore, the extended multi-attribute profiles (EMAPs) are utilized for extracting both the spectral and spatial features. A combinational linear multiple features learning (MFL) method is proposed to further enhance the features extracted by ESMLR and EMAPs. Finally, the logistic regression via the variable splitting and the augmented Lagrangian (LORSAL) is adopted in the proposed framework for reducing the computational time. Experiments are conducted on two well-known HSI datasets, namely the Indian Pines dataset and the Pavia University dataset, which have shown the fast and robust performance of the proposed ESMLR framework.

The research of multi-frame target recognition based on laser active imaging

NASA Astrophysics Data System (ADS)

Wang, Can-jin; Sun, Tao; Wang, Tin-feng; Chen, Juan

2013-09-01

Laser active imaging is fit to conditions such as no difference in temperature between target and background, pitch-black night, bad visibility. Also it can be used to detect a faint target in long range or small target in deep space, which has advantage of high definition and good contrast. In one word, it is immune to environment. However, due to the affect of long distance, limited laser energy and atmospheric backscatter, it is impossible to illuminate the whole scene at the same time. It means that the target in every single frame is unevenly or partly illuminated, which make the recognition more difficult. At the same time the speckle noise which is common in laser active imaging blurs the images . In this paper we do some research on laser active imaging and propose a new target recognition method based on multi-frame images . Firstly, multi pulses of laser is used to obtain sub-images for different parts of scene. A denoising method combined homomorphic filter with wavelet domain SURE is used to suppress speckle noise. And blind deconvolution is introduced to obtain low-noise and clear sub-images. Then these sub-images are registered and stitched to combine a completely and uniformly illuminated scene image. After that, a new target recognition method based on contour moments is proposed. Firstly, canny operator is used to obtain contours. For each contour, seven invariant Hu moments are calculated to generate the feature vectors. At last the feature vectors are input into double hidden layers BP neural network for classification . Experiments results indicate that the proposed algorithm could achieve a high recognition rate and satisfactory real-time performance for laser active imaging.

SU-E-I-24: Design and Fabrication of a Multi-Functional Neck and Thyroid Phantom for Medical Dosimetry and Calibration

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mehdizadeh, S; Sina, S; Karimipourfard, M

Purpose: The purpose of this study is the design and fabrication of a multipurpose anthropomorphic neck and thyroid phantom for use in medical applications (i.e. quality control of images in nuclear medicine, and dosimetry). Methods: The designed neck phantom is composed of seven elliptic cylindrical slices with semi-major axis of 14 and semi-minor axis of 12.5 cm, each having the thickness of 2cm. Thyroid gland, bony part of the neck, and the wind pipe were also built inside the neck phantom. Results: The phantom contains some removable plugs,inside and at its surface to accommodate the TLD chips with different shapesmore » and dimensions, (i.e. rod, cylindrical and cubical TLD chips)for the purpose of medical dosimetry (i.e. in radiology, radiotherapy, and nuclear medicine). For the purpose of quality control of images in nuclear medicine, the removable thyroid gland was built to accommodate the radioactive iodine. The female and male thyroid glands were built in two sizes separately. Conclusion: The designed phantom is a multi-functional phantom which is applicable for dosimetry in diagnostic radiology, radiotherapy, and quality control of images in nuclear medicine.« less

Identifying the optimal segmentors for mass classification in mammograms

NASA Astrophysics Data System (ADS)

Zhang, Yu; Tomuro, Noriko; Furst, Jacob; Raicu, Daniela S.

2015-03-01

In this paper, we present the results of our investigation on identifying the optimal segmentor(s) from an ensemble of weak segmentors, used in a Computer-Aided Diagnosis (CADx) system which classifies suspicious masses in mammograms as benign or malignant. This is an extension of our previous work, where we used various parameter settings of image enhancement techniques to each suspicious mass (region of interest (ROI)) to obtain several enhanced images, then applied segmentation to each image to obtain several contours of a given mass. Each segmentation in this ensemble is essentially a "weak segmentor" because no single segmentation can produce the optimal result for all images. Then after shape features are computed from the segmented contours, the final classification model was built using logistic regression. The work in this paper focuses on identifying the optimal segmentor(s) from an ensemble mix of weak segmentors. For our purpose, optimal segmentors are those in the ensemble mix which contribute the most to the overall classification rather than the ones that produced high precision segmentation. To measure the segmentors' contribution, we examined weights on the features in the derived logistic regression model and computed the average feature weight for each segmentor. The result showed that, while in general the segmentors with higher segmentation success rates had higher feature weights, some segmentors with lower segmentation rates had high classification feature weights as well.

Automated classification and quantitative analysis of arterial and venous vessels in fundus images

NASA Astrophysics Data System (ADS)

Alam, Minhaj; Son, Taeyoon; Toslak, Devrim; Lim, Jennifer I.; Yao, Xincheng

2018-02-01

It is known that retinopathies may affect arteries and veins differently. Therefore, reliable differentiation of arteries and veins is essential for computer-aided analysis of fundus images. The purpose of this study is to validate one automated method for robust classification of arteries and veins (A-V) in digital fundus images. We combine optical density ratio (ODR) analysis and blood vessel tracking algorithm to classify arteries and veins. A matched filtering method is used to enhance retinal blood vessels. Bottom hat filtering and global thresholding are used to segment the vessel and skeleton individual blood vessels. The vessel tracking algorithm is used to locate the optic disk and to identify source nodes of blood vessels in optic disk area. Each node can be identified as vein or artery using ODR information. Using the source nodes as starting point, the whole vessel trace is then tracked and classified as vein or artery using vessel curvature and angle information. 50 color fundus images from diabetic retinopathy patients were used to test the algorithm. Sensitivity, specificity, and accuracy metrics were measured to assess the validity of the proposed classification method compared to ground truths created by two independent observers. The algorithm demonstrated 97.52% accuracy in identifying blood vessels as vein or artery. A quantitative analysis upon A-V classification showed that average A-V ratio of width for NPDR subjects with hypertension decreased significantly (43.13%).

Automatic CT Brain Image Segmentation Using Two Level Multiresolution Mixture Model of EM

NASA Astrophysics Data System (ADS)

Jiji, G. Wiselin; Dehmeshki, Jamshid

2014-04-01

Tissue classification in computed tomography (CT) brain images is an important issue in the analysis of several brain dementias. A combination of different approaches for the segmentation of brain images is presented in this paper. A multi resolution algorithm is proposed along with scaled versions using Gaussian filter and wavelet analysis that extends expectation maximization (EM) algorithm. It is found that it is less sensitive to noise and got more accurate image segmentation than traditional EM. Moreover the algorithm has been applied on 20 sets of CT of the human brain and compared with other works. The segmentation results show the advantages of the proposed work have achieved more promising results and the results have been tested with Doctors.

Stratification of pseudoprogression and true progression of glioblastoma multiform based on longitudinal diffusion tensor imaging without segmentation

PubMed Central

Qian, Xiaohua; Tan, Hua; Zhang, Jian; Zhao, Weilin; Chan, Michael D.; Zhou, Xiaobo

2016-01-01

Purpose: Pseudoprogression (PsP) can mimic true tumor progression (TTP) on magnetic resonance imaging in patients with glioblastoma multiform (GBM). The phenotypical similarity between PsP and TTP makes it a challenging task for physicians to distinguish these entities. So far, no approved biomarkers or computer-aided diagnosis systems have been used clinically for this purpose. Methods: To address this challenge, the authors developed an objective classification system for PsP and TTP based on longitudinal diffusion tensor imaging. A novel spatio-temporal discriminative dictionary learning scheme was proposed to differentiate PsP and TTP, thereby avoiding segmentation of the region of interest. The authors constructed a novel discriminative sparse matrix with the classification-oriented dictionary learning approach by excluding the shared features of two categories, so that the pooled features captured the subtle difference between PsP and TTP. The most discriminating features were then identified from the pooled features by their feature scoring system. Finally, the authors stratified patients with GBM into PsP and TTP by a support vector machine approach. Tenfold cross-validation (CV) and the area under the receiver operating characteristic (AUC) were used to assess the robustness of the developed system. Results: The average accuracy and AUC values after ten rounds of tenfold CV were 0.867 and 0.92, respectively. The authors also assessed the effects of different methods and factors (such as data types, pooling techniques, and dimensionality reduction approaches) on the performance of their classification system which obtained the best performance. Conclusions: The proposed objective classification system without segmentation achieved a desirable and reliable performance in differentiating PsP from TTP. Thus, the developed approach is expected to advance the clinical research and diagnosis of PsP and TTP. PMID:27806598

A new Fourier transform based CBIR scheme for mammographic mass classification: a preliminary invariance assessment

NASA Astrophysics Data System (ADS)

Gundreddy, Rohith Reddy; Tan, Maxine; Qui, Yuchen; Zheng, Bin

2015-03-01

The purpose of this study is to develop and test a new content-based image retrieval (CBIR) scheme that enables to achieve higher reproducibility when it is implemented in an interactive computer-aided diagnosis (CAD) system without significantly reducing lesion classification performance. This is a new Fourier transform based CBIR algorithm that determines image similarity of two regions of interest (ROI) based on the difference of average regional image pixel value distribution in two Fourier transform mapped images under comparison. A reference image database involving 227 ROIs depicting the verified soft-tissue breast lesions was used. For each testing ROI, the queried lesion center was systematically shifted from 10 to 50 pixels to simulate inter-user variation of querying suspicious lesion center when using an interactive CAD system. The lesion classification performance and reproducibility as the queried lesion center shift were assessed and compared among the three CBIR schemes based on Fourier transform, mutual information and Pearson correlation. Each CBIR scheme retrieved 10 most similar reference ROIs and computed a likelihood score of the queried ROI depicting a malignant lesion. The experimental results shown that three CBIR schemes yielded very comparable lesion classification performance as measured by the areas under ROC curves with the p-value greater than 0.498. However, the CBIR scheme using Fourier transform yielded the highest invariance to both queried lesion center shift and lesion size change. This study demonstrated the feasibility of improving robustness of the interactive CAD systems by adding a new Fourier transform based image feature to CBIR schemes.

Backscatter Analysis Using Multi-Temporal SENTINEL-1 SAR Data for Crop Growth of Maize in Konya Basin, Turkey

NASA Astrophysics Data System (ADS)

Abdikan, S.; Sekertekin, A.; Ustunern, M.; Balik Sanli, F.; Nasirzadehdizaji, R.

2018-04-01

Temporal monitoring of crop types is essential for the sustainable management of agricultural activities on both national and global levels. As a practical and efficient tool, remote sensing is widely used in such applications. In this study, Sentinel-1 Synthetic Aperture Radar (SAR) imagery was utilized to investigate the performance of the sensor backscatter image on crop monitoring. Multi-temporal C-band VV and VH polarized SAR images were acquired simultaneously by in-situ measurements which was conducted at Konya basin, central Anatolia Turkey. During the measurements, plant height of maize plant was collected and relationship between backscatter values and plant height was analysed. The maize growth development was described under Biologische Bundesanstalt, bundessortenamt und CHemische industrie (BBCH). Under BBCH stages, the test site was classified as leaf development, stem elongation, heading and flowering in general. The correlation coefficient values indicated high correlation for both polarimetry during the early stages of the plant, while late stages indicated lower values in both polarimetry. As a last step, multi-temporal coverage of crop fields was analysed to map seasonal land use. To this aim, object based image classification was applied following image segmentation. About 80 % accuracies of land use maps were created in this experiment. As preliminary results, it is concluded that Sentinel-1 data provides beneficial information about plant growth. Dual-polarized Sentinel-1 data has high potential for multi-temporal analyses for agriculture monitoring and reliable mapping.

High-Resolution, Non-Invasive Imaging of Upper Vocal Tract Articulators Compatible with Human Brain Recordings

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bouchard, Kristofer E.; Conant, David F.; Anumanchipalli, Gopala K.

A complete neurobiological understanding of speech motor control requires determination of the relationship between simultaneously recorded neural activity and the kinematics of the lips, jaw, tongue, and larynx. Many speech articulators are internal to the vocal tract, and therefore simultaneously tracking the kinematics of all articulators is nontrivial-especially in the context of human electrophysiology recordings. Here, we describe a noninvasive, multi-modal imaging system to monitor vocal tract kinematics, demonstrate this system in six speakers during production of nine American English vowels, and provide new analysis of such data. Classification and regression analysis revealed considerable variability in the articulator-to-acoustic relationship acrossmore » speakers. Non-negative matrix factorization extracted basis sets capturing vocal tract shapes allowing for higher vowel classification accuracy than traditional methods. Statistical speech synthesis generated speech from vocal tract measurements, and we demonstrate perceptual identification. We demonstrate the capacity to predict lip kinematics from ventral sensorimotor cortical activity. These results demonstrate a multi-modal system to non-invasively monitor articulator kinematics during speech production, describe novel analytic methods for relating kinematic data to speech acoustics, and provide the first decoding of speech kinematics from electrocorticography. These advances will be critical for understanding the cortical basis of speech production and the creation of vocal prosthetics.« less

High-Resolution, Non-Invasive Imaging of Upper Vocal Tract Articulators Compatible with Human Brain Recordings

PubMed Central

Anumanchipalli, Gopala K.; Dichter, Benjamin; Chaisanguanthum, Kris S.; Johnson, Keith; Chang, Edward F.

2016-01-01

A complete neurobiological understanding of speech motor control requires determination of the relationship between simultaneously recorded neural activity and the kinematics of the lips, jaw, tongue, and larynx. Many speech articulators are internal to the vocal tract, and therefore simultaneously tracking the kinematics of all articulators is nontrivial—especially in the context of human electrophysiology recordings. Here, we describe a noninvasive, multi-modal imaging system to monitor vocal tract kinematics, demonstrate this system in six speakers during production of nine American English vowels, and provide new analysis of such data. Classification and regression analysis revealed considerable variability in the articulator-to-acoustic relationship across speakers. Non-negative matrix factorization extracted basis sets capturing vocal tract shapes allowing for higher vowel classification accuracy than traditional methods. Statistical speech synthesis generated speech from vocal tract measurements, and we demonstrate perceptual identification. We demonstrate the capacity to predict lip kinematics from ventral sensorimotor cortical activity. These results demonstrate a multi-modal system to non-invasively monitor articulator kinematics during speech production, describe novel analytic methods for relating kinematic data to speech acoustics, and provide the first decoding of speech kinematics from electrocorticography. These advances will be critical for understanding the cortical basis of speech production and the creation of vocal prosthetics. PMID:27019106

High-Resolution, Non-Invasive Imaging of Upper Vocal Tract Articulators Compatible with Human Brain Recordings

DOE PAGES

Bouchard, Kristofer E.; Conant, David F.; Anumanchipalli, Gopala K.; ...

2016-03-28

A complete neurobiological understanding of speech motor control requires determination of the relationship between simultaneously recorded neural activity and the kinematics of the lips, jaw, tongue, and larynx. Many speech articulators are internal to the vocal tract, and therefore simultaneously tracking the kinematics of all articulators is nontrivial-especially in the context of human electrophysiology recordings. Here, we describe a noninvasive, multi-modal imaging system to monitor vocal tract kinematics, demonstrate this system in six speakers during production of nine American English vowels, and provide new analysis of such data. Classification and regression analysis revealed considerable variability in the articulator-to-acoustic relationship acrossmore » speakers. Non-negative matrix factorization extracted basis sets capturing vocal tract shapes allowing for higher vowel classification accuracy than traditional methods. Statistical speech synthesis generated speech from vocal tract measurements, and we demonstrate perceptual identification. We demonstrate the capacity to predict lip kinematics from ventral sensorimotor cortical activity. These results demonstrate a multi-modal system to non-invasively monitor articulator kinematics during speech production, describe novel analytic methods for relating kinematic data to speech acoustics, and provide the first decoding of speech kinematics from electrocorticography. These advances will be critical for understanding the cortical basis of speech production and the creation of vocal prosthetics.« less

Differentiation of Glioblastoma and Lymphoma Using Feature Extraction and Support Vector Machine.

PubMed

Yang, Zhangjing; Feng, Piaopiao; Wen, Tian; Wan, Minghua; Hong, Xunning

2017-01-01

Differentiation of glioblastoma multiformes (GBMs) and lymphomas using multi-sequence magnetic resonance imaging (MRI) is an important task that is valuable for treatment planning. However, this task is a challenge because GBMs and lymphomas may have a similar appearance in MRI images. This similarity may lead to misclassification and could affect the treatment results. In this paper, we propose a semi-automatic method based on multi-sequence MRI to differentiate these two types of brain tumors. Our method consists of three steps: 1) the key slice is selected from 3D MRIs and region of interests (ROIs) are drawn around the tumor region; 2) different features are extracted based on prior clinical knowledge and validated using a t-test; and 3) features that are helpful for classification are used to build an original feature vector and a support vector machine is applied to perform classification. In total, 58 GBM cases and 37 lymphoma cases are used to validate our method. A leave-one-out crossvalidation strategy is adopted in our experiments. The global accuracy of our method was determined as 96.84%, which indicates that our method is effective for the differentiation of GBM and lymphoma and can be applied in clinical diagnosis. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.