Guild-specific responses of avian species richness to LiDAR-derived habitat heterogeneity

NASA Astrophysics Data System (ADS)

Weisberg, Peter J.; Dilts, Thomas E.; Becker, Miles E.; Young, Jock S.; Wong-Kone, Diane C.; Newton, Wesley E.; Ammon, Elisabeth M.

2014-08-01

Ecological niche theory implies that more heterogeneous habitats have the potential to support greater biodiversity. Positive heterogeneity-diversity relationships have been found for most studies investigating animal taxa, although negative relationships also occur and the scale dependence of heterogeneity-diversity relationships is little known. We investigated multi-scale, heterogeneity-diversity relationships for bird communities in a semi-arid riparian landscape, using airborne LiDAR data to derive key measures of structural habitat complexity. Habitat heterogeneity-diversity relationships were generally positive, although the overall strength of relationships varied across avian life history guilds (R2 range: 0.03-0.41). Best predicted were the species richness indices of cavity nesters, habitat generalists, woodland specialists, and foliage foragers. Heterogeneity-diversity relationships were also strongly scale-dependent, with strongest associations at the 200-m scale (4 ha) and weakest associations at the 50-m scale (0.25 ha). Our results underscore the value of LiDAR data for fine-grained quantification of habitat structure, as well as the need for biodiversity studies to incorporate variation among life-history guilds and to simultaneously consider multiple guild functional types (e.g. nesting, foraging, habitat). Results suggest that certain life-history guilds (foliage foragers, cavity nesters, woodland specialists) are more susceptible than others (ground foragers, ground nesters, low nesters) to experiencing declines in local species richness if functional elements of habitat heterogeneity are lost. Positive heterogeneity-diversity relationships imply that riparian conservation efforts need to not only provide high-quality riparian habitat locally, but also to provide habitat heterogeneity across multiple scales.

Ecology and sampling techniques of an understudied subterranean habitat: the Milieu Souterrain Superficiel (MSS).

PubMed

Mammola, Stefano; Giachino, Pier Mauro; Piano, Elena; Jones, Alexandra; Barberis, Marcel; Badino, Giovanni; Isaia, Marco

2016-12-01

The term Milieu Souterrain Superficiel (MSS) has been used since the early 1980s in subterranean biology to categorize an array of different hypogean habitats. In general terms, a MSS habitat represents the underground network of empty air-filled voids and cracks developing within multiple layers of rock fragments. Its origins can be diverse and is generally covered by topsoil. The MSS habitat is often connected both with the deep hypogean domain-caves and deep rock cracks-and the superficial soil horizon. A MSS is usually characterized by peculiar microclimatic conditions, and it can harbor specialized hypogean, endogean, and surface-dwelling species. In light of the many interpretations given by different authors, we reviewed 235 papers regarding the MSS in order to provide a state-of-the-art description of these habitats and facilitate their study. We have briefly described the different types of MSS mentioned in the scientific literature (alluvial, bedrock, colluvial, volcanic, and other types) and synthesized the advances in the study of the physical and ecological factors affecting this habitat-i.e., microclimate, energy flows, animal communities, and trophic interactions. We finally described and reviewed the available sampling methods used to investigate MSS fauna.

Strategies of marine dinoflagellate survival and some rules of assembly

NASA Astrophysics Data System (ADS)

Smayda, Theodore J.; Reynolds, Colin S.

2003-03-01

Dinoflagellate ecology is based on multiple adaptive strategies and species having diverse habitat preferences. Nine types of mixing-irradiance-nutrient habitats selecting for specific marine dinoflagellate life-form types are recognised, with five rules of assembly proposed to govern bloom-species selection and community organisation within these habitats. Assembly is moulded around an abiotic template of light energy, nutrient supply and physical mixing in permutative combinations. Species selected will have one of three basic ( C-, S-, R-) strategies: colonist species ( C-) which predominate in chemically disturbed habitats; nutrient stress tolerant species ( S-), and species ( R-) tolerant of shear/stress forces in physically disturbed water masses. This organisational plan of three major habitat variables and three major adaptive strategies is termed the 3-3 plan. The bloom behaviour and habitat specialisation of dinoflagellates and diatoms are compared. Dinoflagellates behave as annual species, bloom soloists, are ecophysiologically diverse, and habitat specialists whose blooms tend to be monospecific. Diatoms behave as perennial species, guild members, are habitat cosmopolites, have a relatively uniform bloom strategy based on species-rich pools and exhibit limited habitat specialisation. Dinoflagellate bloom-species selection follows a taxonomic hierarchical pathway which progresses from phylogenetic to generic to species selection, and in that sequence. Each hierarchical taxonomic level has its own adaptive requirements subject to rules of assembly. Dinoflagellates would appear to be well suited to exploit marine habitats and to be competitive with other phylogenetic groups, yet fail to do so.

Comparability among four invertebrate sampling methods, Fountain Creek Basin, Colorado, 2010-2012

USGS Publications Warehouse

Zuellig, Robert E.; Bruce, James F.; Stogner, Sr., Robert W.; Brown, Krystal D.

2014-01-01

The U.S. Geological Survey, in cooperation with Colorado Springs City Engineering and Colorado Springs Utilities, designed a study to determine if sampling method and sample timing resulted in comparable samples and assessments of biological condition. To accomplish this task, annual invertebrate samples were collected concurrently using four sampling methods at 15 U.S. Geological Survey streamflow gages in the Fountain Creek basin from 2010 to 2012. Collectively, the four methods are used by local (U.S. Geological Survey cooperative monitoring program) and State monitoring programs (Colorado Department of Public Health and Environment) in the Fountain Creek basin to produce two distinct sample types for each program that target single-and multiple-habitats. This study found distinguishable differences between single-and multi-habitat sample types using both community similarities and multi-metric index values, while methods from each program within sample type were comparable. This indicates that the Colorado Department of Public Health and Environment methods were compatible with the cooperative monitoring program methods within multi-and single-habitat sample types. Comparisons between September and October samples found distinguishable differences based on community similarities for both sample types, whereas only differences were found for single-habitat samples when multi-metric index values were considered. At one site, differences between September and October index values from single-habitat samples resulted in opposing assessments of biological condition. Direct application of the results to inform the revision of the existing Fountain Creek basin U.S. Geological Survey cooperative monitoring program are discussed.

Testing projected wild bee distributions in agricultural habitats: predictive power depends on species traits and habitat type.

PubMed

Marshall, Leon; Carvalheiro, Luísa G; Aguirre-Gutiérrez, Jesús; Bos, Merijn; de Groot, G Arjen; Kleijn, David; Potts, Simon G; Reemer, Menno; Roberts, Stuart; Scheper, Jeroen; Biesmeijer, Jacobus C

2015-10-01

Species distribution models (SDM) are increasingly used to understand the factors that regulate variation in biodiversity patterns and to help plan conservation strategies. However, these models are rarely validated with independently collected data and it is unclear whether SDM performance is maintained across distinct habitats and for species with different functional traits. Highly mobile species, such as bees, can be particularly challenging to model. Here, we use independent sets of occurrence data collected systematically in several agricultural habitats to test how the predictive performance of SDMs for wild bee species depends on species traits, habitat type, and sampling technique. We used a species distribution modeling approach parametrized for the Netherlands, with presence records from 1990 to 2010 for 193 Dutch wild bees. For each species, we built a Maxent model based on 13 climate and landscape variables. We tested the predictive performance of the SDMs with independent datasets collected from orchards and arable fields across the Netherlands from 2010 to 2013, using transect surveys or pan traps. Model predictive performance depended on species traits and habitat type. Occurrence of bee species specialized in habitat and diet was better predicted than generalist bees. Predictions of habitat suitability were also more precise for habitats that are temporally more stable (orchards) than for habitats that suffer regular alterations (arable), particularly for small, solitary bees. As a conservation tool, SDMs are best suited to modeling rarer, specialist species than more generalist and will work best in long-term stable habitats. The variability of complex, short-term habitats is difficult to capture in such models and historical land use generally has low thematic resolution. To improve SDMs' usefulness, models require explanatory variables and collection data that include detailed landscape characteristics, for example, variability of crops and flower availability. Additionally, testing SDMs with field surveys should involve multiple collection techniques.

Evaluating the NOAA Coastal and Marine Ecological Classification Standard in estuarine systems: A Columbia River Estuary case study

NASA Astrophysics Data System (ADS)

Keefer, Matthew L.; Peery, Christopher A.; Wright, Nancy; Daigle, William R.; Caudill, Christopher C.; Clabough, Tami S.; Griffith, David W.; Zacharias, Mark A.

2008-06-01

A common first step in conservation planning and resource management is to identify and classify habitat types, and this has led to a proliferation of habitat classification systems. Ideally, classifications should be scientifically and conceptually rigorous, with broad applicability across spatial and temporal scales. Successful systems will also be flexible and adaptable, with a framework and supporting lexicon accessible to users from a variety of disciplines and locations. A new, continental-scale classification system for coastal and marine habitats—the Coastal and Marine Ecological Classification Standard (CMECS)—is currently being developed for North America by NatureServe and the National Oceanic and Atmospheric Administration (NOAA). CMECS is a nested, hierarchical framework that applies a uniform set of rules and terminology across multiple habitat scales using a combination of oceanographic (e.g. salinity, temperature), physiographic (e.g. depth, substratum), and biological (e.g. community type) criteria. Estuaries are arguably the most difficult marine environments to classify due to large spatio-temporal variability resulting in rapidly shifting benthic and water column conditions. We simultaneously collected data at eleven subtidal sites in the Columbia River Estuary (CRE) in fall 2004 to evaluate whether the estuarine component of CMECS could adequately classify habitats across several scales for representative sites within the estuary spanning a range of conditions. Using outputs from an acoustic Doppler current profiler (ADCP), CTD (conductivity, temperature, depth) sensor, and PONAR (benthic dredge) we concluded that the CMECS hierarchy provided a spatially explicit framework in which to integrate multiple parameters to define macro-habitats at the 100 m 2 to >1000 m 2 scales, or across several tiers of the CMECS system. The classification's strengths lie in its nested, hierarchical structure and in the development of a standardized, yet flexible classification lexicon. The application of the CMECS to other estuaries in North America should therefore identify similar habitat types at similar scales as we identified in the CRE. We also suggest that the CMECS could be improved by refining classification thresholds to better reflect ecological processes, by direct integration of temporal variability, and by more explicitly linking physical and biological processes with habitat patterns.

Mosquito vector-associated microbiota: Metabarcoding bacteria and eukaryotic symbionts across habitat types in Thailand endemic for dengue and other arthropod-borne diseases.

PubMed

Thongsripong, Panpim; Chandler, James Angus; Green, Amy B; Kittayapong, Pattamaporn; Wilcox, Bruce A; Kapan, Durrell D; Bennett, Shannon N

2018-01-01

Vector-borne diseases are a major health burden, yet factors affecting their spread are only partially understood. For example, microbial symbionts can impact mosquito reproduction, survival, and vectorial capacity, and hence affect disease transmission. Nonetheless, current knowledge of mosquito-associated microbial communities is limited. To characterize the bacterial and eukaryotic microbial communities of multiple vector species collected from different habitat types in disease endemic areas, we employed next-generation 454 pyrosequencing of 16S and 18S rRNA amplicon libraries, also known as metabarcoding. We investigated pooled whole adult mosquitoes of three medically important vectors, Aedes aegypti , Ae. albopictus , and Culex quinquefasciatus, collected from different habitats across central Thailand where we previously characterized mosquito diversity. Our results indicate that diversity within the mosquito microbiota is low, with the majority of microbes assigned to one or a few taxa. Two of the most common eukaryotic and bacterial genera recovered ( Ascogregarina and Wolbachia, respectively) are known mosquito endosymbionts with potentially parasitic and long evolutionary relationships with their hosts. Patterns of microbial composition and diversity appeared to differ by both vector species and habitat for a given species, although high variability between samples suggests a strong stochastic element to microbiota assembly. In general, our findings suggest that multiple factors, such as habitat condition and mosquito species identity, may influence overall microbial community composition, and thus provide a basis for further investigations into the interactions between vectors, their microbial communities, and human-impacted landscapes that may ultimately affect vector-borne disease risk.

Woodcock singing-ground counts and habitat changes in the northeastern United States

USGS Publications Warehouse

Dwyer, T.J.; McAuley, D.G.; Derleth, E.L.

1983-01-01

Aerial photography from the late 1960's and the late 1970's was used to study habitat changes along 78 American woodcock (Scolopax minor) singing-ground routes in 9 northeastern states. The most noticeable changes were declines in the amount of abandoned field, cropland, shrubland, and field/pasture. The amount of land in the urban/industrial type increased 33.4% from the late 1960's to the late 1970's. We examined relationships between the woodcock call-count index and habitat variables using multiple-regression techniques. The abundance of calling male woodcock was positively correlated with the amount of abandoned field and alder (Alnus sp.) and negatively correlated with the amount of urban/industrial type. However, only the change in the urban/industrial type was significantly (P < 0.05) related to the change in the call-count index. Urban/industrial area increased, whereas the call-count index declined on average in our sample of routes by 1.4 birds/route (40.5%).

Understanding the contribution of habitats and regional variation to long-term population trends in tricolored blackbirds

PubMed Central

Graves, Emily E; Holyoak, Marcel; Rodd Kelsey, T; Meese, Robert J

2013-01-01

Population trends represent a minimum amount of information required to assess the conservation status of a species. However, understanding and detecting trends can be complicated by variation among habitats and regions, and by dispersal connecting habitats through source-sink dynamics. We analyzed trends in breeding populations between habitats and regions to better understand the overall dynamics of a species' decline. Specifically, we analyzed historical trends in breeding populations of tricolored blackbirds (Agelaius tricolor) using breeding records from 1907 to 2009. The species breeds itinerantly and ephemerally uses multiple habitat types and breeding areas, which make interpretation of trends complex. We found overall abundance declines of 63% between 1935 and 1975. Since 1980 overall declines became nonsignificant and obscure despite large amounts of data from 1980 to 2009. Temporal trends differed between breeding habitat types and were associated with regional differences in population declines. A new habitat, triticale crops (a wheat-rye hybrid grain) produced colonies 40× larger, on average, than other breeding habitats, and contributed to a change in regional distribution since it primarily occurred in a single region. The mechanism for such an effect is not clear, but could represent the local availability of foodstuffs in the landscape rather than something specific to triticale crops. While variation in trends among habitats clearly occurred, they could not easily be ascribed to source-sink dynamics, ecological traps, habitat selection or other detailed ecological mechanisms. Nonetheless, such exchanges provide valuable information to guide management of dynamic systems. PMID:24101977

Community structure of age-0 fishes in paired mainstem and created shallow-water habitats in the Lower Missouri River

USGS Publications Warehouse

Starks, Trevor A.; Long, James M.; Dzialowski, Andrew R.

2016-01-01

Anthropogenic alterations to aquatic ecosystems have greatly reduced and homogenized riverine habitat, especially those used by larval and juvenile fishes. Creation of shallow-water habitats is used as a restoration technique in response to altered conditions in several studies globally, but only recently in the USA. In the summer of 2012, the U.S. Army Corps of Engineers sampled larval and juvenile fishes at six paired sites (mainstem and constructed chute shallow-water habitats) along a section of the Missouri River between Rulo, NE and St. Louis, MO, USA. From those samples, we enumerated and identified a total of 7622 fishes representing 12 families. Community responses of fishes to created shallow-water habitats were assessed by comparisons of species richness and diversity measures between paired sites and among sampling events. Shannon entropy measures were transformed, and gamma diversity (total diversity) was partitioned into two components, alpha (within community) and beta (between community) diversity using a multiplicative decomposition method. Mantel test results suggest site location, time of sampling event and habitat type were drivers of larval and juvenile community structure. Paired t-test results indicated little to no differences in beta diversity between habitat types; however, chute habitats had significantly higher alpha and gamma diversity as well as increased abundances of Asian carp larvae when compared with mainstem shallow-water habitat. Our results not only show the importance of created shallow-water habitat in promoting stream fish diversity but also highlight the role space and time may play in future restoration and management efforts. 

The interplay between habitat structure and chemical contaminants on biotic responses of benthic organisms

PubMed Central

Matias, Miguel G.; Coleman, Ross A.

2016-01-01

Habitat structure influences the diversity and distribution of organisms, potentially affecting their response to disturbances by either affecting their ‘susceptibility’ or through the provision of resources that can mitigate impacts of disturbances. Chemical disturbances due to contamination are associated with decreases in diversity and functioning of systems and are also likely to increase due to coastal urbanisation. Understanding how habitat structure interacts with contaminants is essential to predict and therefore manage such effects, minimising their consequences to marine systems. Here, we manipulated two structurally different habitats and exposed them to different types of contaminants. The effects of contamination and habitat structure interacted, affecting species richness. More complex experimental habitats were colonized by a greater diversity of organisms than the less complex habitats. These differences disappeared, however, when habitats were exposed to contaminants, suggesting that contaminants can override effects of habitats structure at small spatial scales. These results provide insight into the complex ways that habitat structure and contamination interact and the need to incorporate evidence of biotic responses from individual disturbances to multiple stressors. Such effects need to be taken into account when designing and planning management and conservation strategies to natural systems. PMID:27168991

Ecology and sampling techniques of an understudied subterranean habitat: the Milieu Souterrain Superficiel (MSS)

NASA Astrophysics Data System (ADS)

Mammola, Stefano; Giachino, Pier Mauro; Piano, Elena; Jones, Alexandra; Barberis, Marcel; Badino, Giovanni; Isaia, Marco

2016-12-01

The term Milieu Souterrain Superficiel (MSS) has been used since the early 1980s in subterranean biology to categorize an array of different hypogean habitats. In general terms, a MSS habitat represents the underground network of empty air-filled voids and cracks developing within multiple layers of rock fragments. Its origins can be diverse and is generally covered by topsoil. The MSS habitat is often connected both with the deep hypogean domain—caves and deep rock cracks—and the superficial soil horizon. A MSS is usually characterized by peculiar microclimatic conditions, and it can harbor specialized hypogean, endogean, and surface-dwelling species. In light of the many interpretations given by different authors, we reviewed 235 papers regarding the MSS in order to provide a state-of-the-art description of these habitats and facilitate their study. We have briefly described the different types of MSS mentioned in the scientific literature (alluvial, bedrock, colluvial, volcanic, and other types) and synthesized the advances in the study of the physical and ecological factors affecting this habitat—i.e., microclimate, energy flows, animal communities, and trophic interactions. We finally described and reviewed the available sampling methods used to investigate MSS fauna.

Assessing habitat selection in Spring by male American Woodcock in Maine with a geographic information system

USGS Publications Warehouse

Sprankle, K.E.; Sepik, G.F.; McAuley, D.G.; Longcore, J.R.; McAuley, Daniel G.; Bruggink, John G.; Sepik, Greg F.

2000-01-01

Geographic information system (GIS) technology was used to identify habitats available to and used by male American woodcock (Scolopax minor) equipped with radio transmitters--54 in 1987, 51 in 1988, 46 in 1989 at Moosehorn National Wildlife Refuge, Maine. Woodcock were monitored from time of capture (25 March-15 April) to 15 June each year. To determine habitat selection by male woodcock, the following habitat characteristics were measured: land cover, age and stocking density of the forest overstory, soil drainage and texture, aspect, and percent slope. Habitat selection was examined as affected by the covariates weather and age-class of woodcock, and among years for diurnal and crepuscular periods of the breeding period. Multivariate techniques that compare use and availability of habitats were not available, so a statistical model was developed to rate importance of multiple habitat characteristics selected by woodcock. The most critical period for woodcock in terms of survival was from arrival to: mid-April. Second-year and after-second-year woodcock did not select different (P > 0.05) habitat types, but they did select different types among years and within breeding intervals (P < 0.05). In years when weather was moderate, woodcock selected young, dense stands of speckled alder (Alnus rugosa) and hardwoods, interspersed with forest openings. Suitable habitat can be maintained by creating an uneven-aged forest managed in even-aged blocks composed of several hardwood species. Managers can now quantify suitable woodcock habitat in a GIS and plan large-scale forest-harvesting strategies using data on several habitat characteristics (e.g., land cover, stand age, stocking density, soil drainage and texture, and aspect).

Multispecies genetic objectives in spatial conservation planning.

PubMed

Nielsen, Erica S; Beger, Maria; Henriques, Romina; Selkoe, Kimberly A; von der Heyden, Sophie

2017-08-01

Growing threats to biodiversity and global alteration of habitats and species distributions make it increasingly necessary to consider evolutionary patterns in conservation decision making. Yet, there is no clear-cut guidance on how genetic features can be incorporated into conservation-planning processes, despite multiple molecular markers and several genetic metrics for each marker type to choose from. Genetic patterns differ between species, but the potential tradeoffs among genetic objectives for multiple species in conservation planning are currently understudied. We compared spatial conservation prioritizations derived from 2 metrics of genetic diversity (nucleotide and haplotype diversity) and 2 metrics of genetic isolation (private haplotypes and local genetic differentiation) in mitochondrial DNA of 5 marine species. We compared outcomes of conservation plans based only on habitat representation with plans based on genetic data and habitat representation. Fewer priority areas were selected for conservation plans based solely on habitat representation than on plans that included habitat and genetic data. All 4 genetic metrics selected approximately similar conservation-priority areas, which is likely a result of prioritizing genetic patterns across a genetically diverse array of species. Largely, our results suggest that multispecies genetic conservation objectives are vital to creating protected-area networks that appropriately preserve community-level evolutionary patterns. © 2016 Society for Conservation Biology.

Equine Grazing in Managed Subalpine Wetlands: Effects on Arthropods and Plant Structure as a Function of Habitat

NASA Astrophysics Data System (ADS)

Holmquist, Jeffrey G.; Schmidt-Gengenbach, Jutta; Haultain, Sylvia A.

2013-12-01

Grazing management necessarily emphasizes the most spatially extensive vegetation assemblages, but landscapes are mosaics, often with more mesic vegetation types embedded within a matrix of drier vegetation. Our primary objective was to contrast effects of equine grazing on both subalpine vegetation structure and associated arthropods in a drier reed grass ( Calamagrostis muiriana) dominated habitat versus a wetter, more productive sedge habitat ( Carex utriculata). A second objective was to compare reed grass and sedge as habitats for fauna, irrespective of grazing. All work was done in Sequoia National Park (CA, USA), where detailed, long-term records of stock management were available. We sampled paired grazed and control wet meadows that contained both habitats. There were moderate negative effects of grazing on vegetation, and effects were greater in sedge than in reed grass. Conversely, negative grazing effects on arthropods, albeit limited, were greater in the drier reed grass, possibly due to microhabitat differences. The differing effects on plants and animals as a function of habitat emphasize the importance of considering both flora and fauna, as well as multiple habitat types, when making management decisions. Sedge supported twice the overall arthropod abundance of reed grass as well as greater diversity; hemipteran and dipteran taxa were particularly abundant in sedge. Given the greater grazing effects on sedge vegetation, greater habitat provision for terrestrial arthropods, and value as aquatic arthropod habitat, the wetter sedge assemblage is worthy of additional consideration by managers when planning for grazing and other aspects of land usage.

Wetlands in Changed Landscapes: The Influence of Habitat Transformation on the Physico-Chemistry of Temporary Depression Wetlands

PubMed Central

Bird, Matthew S.; Day, Jenny A.

2014-01-01

Temporary wetlands dominate the wet season landscape of temperate, semi-arid and arid regions, yet, other than their direct loss to development and agriculture, little information exists on how remaining wetlands have been altered by anthropogenic conversion of surrounding landscapes. This study investigates relationships between the extent and type of habitat transformation around temporary wetlands and their water column physico-chemical characteristics. A set of 90 isolated depression wetlands (seasonally inundated) occurring on coastal plains of the south-western Cape mediterranean-climate region of South Africa was sampled during the winter/spring wet season of 2007. Wetlands were sampled across habitat transformation gradients according to the areal cover of agriculture, urban development and alien invasive vegetation within 100 and 500 m radii of each wetland edge. We hypothesized that the principal drivers of physico-chemical conditions in these wetlands (e.g. soil properties, basin morphology) are altered by habitat transformation. Multivariate multiple regression analyses (distance-based Redundancy Analysis) indicated significant associations between wetland physico-chemistry and habitat transformation (overall transformation within 100 and 500 m, alien vegetation cover within 100 and 500 m, urban cover within 100 m); although for significant regressions the amount of variation explained was very low (range: ∼2 to ∼5.5%), relative to that explained by purely spatio-temporal factors (range: ∼35.5 to ∼43%). The nature of the relationships between each type of transformation in the landscape and individual physico-chemical variables in wetlands were further explored with univariate multiple regressions. Results suggest that conservation of relatively narrow (∼100 m) buffer strips around temporary wetlands is likely to be effective in the maintenance of natural conditions in terms of physico-chemical water quality. PMID:24533161

Testing scale-dependent effects of seminatural habitats on farmland biodiversity.

PubMed

Dainese, Matteo; Luna, Diego Inclán; Sitzia, Tommaso; Marini, Lorenzo

2015-09-01

The effectiveness of conservation interventions for maximizing biodiversity benefits from agri-environment schemes (AESs) is expected to depend on the quantity of seminatural habitats in the surrounding landscape. To verify this hypothesis, we developed a hierarchical sampling design to assess the effects of field boundary type and cover of seminatural habitats in the landscape at two nested spatial scales. We sampled three types of field boundaries with increasing structural complexity (grass margin, simple hedgerow, complex hedgerow) in paired landscapes with the presence or absence of seminatural habitats (radius 0.5 km), that in turn, were nested within 15 areas with different proportions of seminatural habitats at a larger spatial scale (10 X 10 km). Overall, 90 field boundaries were sampled across a Mediterranean'region (northeastern Italy). We considered species richness response across three different taxonomic groups: vascular plants, butterflies, and tachinid flies. No interactions between type of field boundary and surrounding landscape were found at either 0.5 and 10 km, indicating that the quality of field boundary had the same effect irrespective of the cover of seminatural habitats. At the local scale, extended-width grass margins yielded higher plant species richness, while hedgerows yielded higher species richness of butterflies and tachinids. At the 0.5-km landscape scale, the effect of the proportion of seminatural habitats was neutral for plants and tachinids, while butterflies were positively related to the proportion of forest. At the 10-km landscape scale, only butterflies responded positively to the proportion of seminatural habitats. Our study confirmed the importance of testing multiple scales when considering species from different taxa and with different mobility. We showed that the quality of field boundaries at the local scale was an important factor in enhancing farmland biodiversity. For butterflies, AESs should focus particular attention on preservation'of forest patches in agricultural landscapes within 0.5 kin, as well as the conservation of seminatural habitats at a wider landscape scale.

Anopheles larval abundance and diversity in three rice agro-village complexes Mwea irrigation scheme, central Kenya.

PubMed

Mwangangi, Joseph M; Shililu, Josephat; Muturi, Ephantus J; Muriu, Simon; Jacob, Benjamin; Kabiru, Ephantus W; Mbogo, Charles M; Githure, John; Novak, Robert J

2010-08-09

The diversity and abundance of Anopheles larvae has significant influence on the resulting adult mosquito population and hence the dynamics of malaria transmission. Studies were conducted to examine larval habitat dynamics and ecological factors affecting survivorship of aquatic stages of malaria vectors in three agro-ecological settings in Mwea, Kenya. Three villages were selected based on rice husbandry and water management practices. Aquatic habitats in the 3 villages representing planned rice cultivation (Mbui Njeru), unplanned rice cultivation (Kiamachiri) and non-irrigated (Murinduko) agro-ecosystems were sampled every 2 weeks to generate stage-specific estimates of mosquito larval densities, relative abundance and diversity. Records of distance to the nearest homestead, vegetation coverage, surface debris, turbidity, habitat stability, habitat type, rice growth stage, number of rice tillers and percent Azolla cover were taken for each habitat. Captures of early, late instars and pupae accounted for 78.2%, 10.9% and 10.8% of the total Anopheles immatures sampled (n = 29,252), respectively. There were significant differences in larval abundance between 3 agro-ecosystems. The village with 'planned' rice cultivation had relatively lower Anopheles larval densities compared to the villages where 'unplanned' or non-irrigated. Similarly, species composition and richness was higher in the two villages with either 'unplanned' or limited rice cultivation, an indication of the importance of land use patterns on diversity of larval habitat types. Rice fields and associated canals were the most productive habitat types while water pools and puddles were important for short periods during the rainy season. Multiple logistic regression analysis showed that presence of other invertebrates, percentage Azolla cover, distance to nearest homestead, depth and water turbidity were the best predictors for Anopheles mosquito larval abundance. These results suggest that agricultural practices have significant influence on mosquito species diversity and abundance and that certain habitat characteristics favor production of malaria vectors. These factors should be considered when implementing larval control strategies which should be targeted based on habitat productivity and water management.

Wildfires alter rodent community structure across four vegetation types in southern California, USA

USGS Publications Warehouse

Brehme, Cheryl S.; Clark, Denise R.; Rochester, Carlton J.; Fisher, Robert N.

2011-01-01

We surveyed burned and unburned plots across four habitat reserves in San Diego County, California, USA, in 2005 and 2006, to assess the effects of the 2003 wildfires on the community structure and relative abundance of rodent species. The reserves each contained multiple vegetation types (coastal sage scrub, chaparral, woodland, and grassland) and spanned from 250 m to 1078 m in elevation. Multivariate analyses revealed a more simplified rodent community structure in all burned habitats in comparison to unburned habitats. Reduction in shrub and tree cover was highly predictive of changes in post-fire rodent community structure in the burned coastal sage scrub and chaparral habitats. Reduction in cover was not predictive for the less substantially burned woodlands and grasslands, for which we hypothesized that interspecific competition played a greater role in post-fire community structure. Across vegetation types, generalists and open habitat specialists typically increased in relative abundance, whereas closed habitat specialists decreased. We documented significant increases in relative abundance of the deer mouse (Peromyscus maniculatus Wagner) and Dulzura kangaroo rat (Dipodomys simulans Merriam). In contrast, we found significant decreases in relative abundance for the California mouse (Peromyscus californicus Gambel), San Diego pocket mouse (Chaetodipus fallax Merriam), desert woodrat (Neotoma lepida Thomas), and brush mouse (Peromyscus boylii Baird). Currently, our research program involves assessment of whether habitat conservation plans (HCPs) in southern California provide long-term protection to HCP covered species, as well as preserve ecosystem function. The scenario of increased wildfires needs to be incorporated into this assessment. We discuss our results in relation to management and conservation planning under a future scenario of larger and more frequent wildfires in southern California.

Optimal conservation resource allocation under variable economic and ecological time discounting rates in boreal forest.

PubMed

Mazziotta, Adriano; Pouzols, Federico Montesino; Mönkkönen, Mikko; Kotiaho, Janne S; Strandman, Harri; Moilanen, Atte

2016-09-15

Resource allocation to multiple alternative conservation actions is a complex task. A common trade-off occurs between protection of smaller, expensive, high-quality areas versus larger, cheaper, partially degraded areas. We investigate optimal allocation into three actions in boreal forest: current standard forest management rules, setting aside of mature stands, or setting aside of clear-cuts. We first estimated how habitat availability for focal indicator species and economic returns from timber harvesting develop through time as a function of forest type and action chosen. We then developed an optimal resource allocation by accounting for budget size and habitat availability of indicator species in different forest types. We also accounted for the perspective adopted towards sustainability, modeled via temporal preference and economic and ecological time discounting. Controversially, we found that in boreal forest set-aside followed by protection of clear-cuts can become a winning cost-effective strategy when accounting for habitat requirements of multiple species, long planning horizon, and limited budget. It is particularly effective when adopting a long-term sustainability perspective, and accounting for present revenues from timber harvesting. The present analysis assesses the cost-effective conditions to allocate resources into an inexpensive conservation strategy that nevertheless has potential to produce high ecological values in the future. Copyright © 2016 Elsevier Ltd. All rights reserved.

Phylogenetic evidence from freshwater crayfishes that cave adaptation is not an evolutionary dead‐end

PubMed Central

Stern, David B.; Breinholt, Jesse; Pedraza‐Lara, Carlos; López‐Mejía, Marilú; Owen, Christopher L.; Bracken‐Grissom, Heather; Fetzner, James W.; Crandall, Keith A.

2017-01-01

Abstract Caves are perceived as isolated, extreme habitats with a uniquely specialized biota, which long ago led to the idea that caves are “evolutionary dead‐ends.” This implies that cave‐adapted taxa may be doomed for extinction before they can diversify or transition to a more stable state. However, this hypothesis has not been explicitly tested in a phylogenetic framework with multiple independently evolved cave‐dwelling groups. Here, we use the freshwater crayfish, a group with dozens of cave‐dwelling species in multiple lineages, as a system to test this hypothesis. We consider historical patterns of lineage diversification and habitat transition as well as current patterns of geographic range size. We find that while cave‐dwelling lineages have small relative range sizes and rarely transition back to the surface, they exhibit remarkably similar diversification patterns to those of other habitat types and appear to be able to maintain a diversity of lineages through time. This suggests that cave adaptation is not a “dead‐end” for freshwater crayfish, which has positive implications for our understanding of biodiversity and conservation in cave habitats. PMID:28804900

Lake Malawi cichlid evolution along a benthic/limnetic axis.

PubMed

Hulsey, C D; Roberts, R J; Loh, Y-H E; Rupp, M F; Streelman, J T

2013-07-01

Divergence along a benthic to limnetic habitat axis is ubiquitous in aquatic systems. However, this type of habitat divergence has largely been examined in low diversity, high latitude lake systems. In this study, we examined the importance of benthic and limnetic divergence within the incredibly species-rich radiation of Lake Malawi cichlid fishes. Using novel phylogenetic reconstructions, we provided a series of hypotheses regarding the evolutionary relationships among 24 benthic and limnetic species that suggests divergence along this axis has occurred multiple times within Lake Malawi cichlids. Because pectoral fin morphology is often associated with divergence along this habitat axis in other fish groups, we investigated divergence in pectoral fin muscles in these benthic and limnetic cichlid species. We showed that the eight pectoral fin muscles and fin area generally tended to evolve in a tightly correlated manner in the Lake Malawi cichlids. Additionally, we found that larger pectoral fin muscles are strongly associated with the independent evolution of the benthic feeding habit across this group of fish. Evolutionary specialization along a benthic/limnetic axis has occurred multiple times within this tropical lake radiation and has produced repeated convergent matching between exploitation of water column habitats and locomotory morphology.

Comparability among four invertebrate sampling methods and two multimetric indexes, Fountain Creek Basin, Colorado, 2010–2012

USGS Publications Warehouse

Bruce, James F.; Roberts, James J.; Zuellig, Robert E.

2018-05-24

The U.S. Geological Survey (USGS), in cooperation with Colorado Springs City Engineering and Colorado Springs Utilities, analyzed previously collected invertebrate data to determine the comparability among four sampling methods and two versions (2010 and 2017) of the Colorado Benthic Macroinvertebrate Multimetric Index (MMI). For this study, annual macroinvertebrate samples were collected concurrently (in space and time) at 15 USGS surface-water gaging stations in the Fountain Creek Basin from 2010 to 2012 using four sampling methods. The USGS monitoring project in the basin uses two of the methods and the Colorado Department of Public Health and Environment recommends the other two. These methods belong to two distinct sample types, one that targets single habitats and one that targets multiple habitats. The study results indicate that there are significant differences in MMI values obtained from the single-habitat and multihabitat sample types but methods from each program within each sample type produced comparable values. This study also determined that MMI values calculated by different versions of the Colorado Benthic Macroinvertebrate MMI are indistinguishable. This indicates that the Colorado Department of Public Health and Environment methods are comparable with the USGS monitoring project methods for single-habitat and multihabitat sample types. This report discusses the direct application of the study results to inform the revision of the existing USGS monitoring project in the Fountain Creek Basin.

CONTRIBUTIONS OF ESTUARINE HABITAT TYPES TO THE ECOLOGICAL INTEGRITY OF A SMALL COVE

EPA Science Inventory

The U.S. EPA, NHEERL, Atlantic Ecology Division, is investigating ecosystem-level approaches to evaluate ecological integrity at multiple scales. The ultimate goal of our project is to develop an ecosystem-level tool to examine impacts of nitrogen pollution on biological integrit...

Estuarine Landcover Along the Lower Columbia River Estuary Determined from Compact Ariborne Spectrographic Imager (CASI) Imagery, Technical Report 2003.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garono, Ralph; Robinson, Rob

2003-10-01

Developing an understanding of the distribution and changes in estuarine and riparian habitats is critical to the management of biological resources in the lower Columbia River. In a recently completed comprehensive ecosystem protection and enhancement plan for the lower Columbia River Estuary (CRE), Jerrick (1999) identified habitat loss and modification as one of the key threats to the integrity of the CRE ecosystem. This management plan called for an inventory of habitats as key first step in the CRE long-term restoration effort. While previous studies have produced useful data sets depicting habitat cover types along portions of the lower CREmore » (Thomas, 1980; Thomas, 1983; Graves et al., 1995; NOAA, 1997; Allen, 1999), no single study has produced a description of the habitats for the entire CRE. Moreover, the previous studies differed in data sources and methodologies making it difficult to merge data or to make temporal comparisons. Therefore, the Lower Columbia River Estuary Partnership (Estuary Partnership) initiated a habitat cover mapping project in 2000. The goal of this project was to produce a data set depicting the current habitat cover types along the lower Columbia River, from its mouth to the Bonneville Dam, a distance of {approx}230-km (Fig. 1) using both established and emerging remote sensing techniques. For this project, we acquired two types of imagery, Landsat 7 ETM+ and Compact Airborne Spectrographic Imager (CASI). Landsat and CASI imagery differ in spatial and spectral resolution: the Landsat 7 ETM+ sensor collects reflectance data in seven spectral bands with a spatial resolution of 30-m and the CASI sensor collects reflectance data in 19 bands (in our study) with a spatial resolution of 1.5-m. We classified both sets of imagery and produced a spatially linked, hierarchical habitat data set for the entire CRE and its floodplain. Landsat 7 ETM+ classification results are presented in a separate report (Garono et al., 2003). This report presents classification results from analysis of the CASI imagery. Data sets produced for this project from both types of imagery fill a critical information gap by creating a current description of the condition and extent of estuarine habitat cover types along the lower Columbia River. Results from this study will be used by the Estuary Partnership and its cooperators to: (1) develop indicators of 'habitat health' and biological integrity; (2) develop definitions of 'critical salmonid habitat'; (3) identify and evaluate potential wetland conservation and restoration sites; (4) track exotic and invasive species; and (5) develop an understanding of how estuarine and riverine habitats have changed over the past 200 years. This study focuses on estuarine and riparian habitat cover types important to native species, particularly juvenile salmonids. This study is meant to provide support to the multiple efforts currently underway to recover 12 species of Columbia River salmonids identified as endangered or threatened under the Endangered Species Act.« less

The influence of habitat on the evolution of plants: a case study across Saxifragales

PubMed Central

de Casas, Rafael Rubio; Mort, Mark E.; Soltis, Douglas E.

2016-01-01

Background and Aims Organismal evolution tends to be closely associated with ecological conditions. However, the extent to which this association constrains adaptation or diversification into new habitats remains unclear. We studied habitat evolution in the hyper-diverse angiosperm clade Saxifragales. Methods We used species-level phylogenies for approx. 950 species to analyse the evolution of habitat shifts as well as their influence on plant diversification. We combined habitat characterization based on floristic assignments and state-of-the art phylogenetic comparative methods to estimate within- and across-habitat diversification patterns. Key Results Our analyses showed that Saxifragales diversified into multiple habitats from a forest-inhabiting ancestor and that this diversification is governed by relatively rare habitat shifts. Lineages are likely to stay within inferred ancestral ecological conditions. Adaptation to some habitat types (e.g. aquatic, desert) may be canalizing events that lineages do not escape. Although associations between increased diversification rates and shifts in habitat preferences are occasionally observed, extreme macroevolutionary rates are closely associated with specific habitats. Lineages occurring in shrubland, and especially tundra and rock cliffs, exhibit comparatively high diversification, whereas forest, grassland, desert and aquatic habitats are associated with low diversification. Conclusions The likelihood of occupation of new habitats appears to be asymmetric. Shifts to aquatic and desert habitats may be canalizing events. Other habitats, such as tundra, might act as evolutionary sources, while forests provide the only habitat seemingly colonized easily by lineages originating elsewhere. However, habitat shifts are very rare, and any major environmental alteration is expected to have dramatic evolutionary consequences. PMID:27551029

SKYLAB II - Making a Deep Space Habitat from a Space Launch System Propellant Tank

NASA Technical Reports Server (NTRS)

Griffin, Brand N.; Smitherman, David; Kennedy, Kriss J.; Toups, Larry; Gill, Tracy; Howe, A. Scott

2012-01-01

Called a "House in Space," Skylab was an innovative program that used a converted Saturn V launch vehicle propellant tank as a space station habitat. It was launched in 1973 fully equipped with provisions for three separate missions of three astronauts each. The size and lift capability of the Saturn V enabled a large diameter habitat, solar telescope, multiple docking adaptor, and airlock to be placed on-orbit with a single launch. Today, the envisioned Space Launch System (SLS) offers similar size and lift capabilities that are ideally suited for a Skylab type mission. An envisioned Skylab II mission would employ the same propellant tank concept; however serve a different mission. In this case, the SLS upper stage hydrogen tank is used as a Deep Space Habitat (DSH) for NASA s planned missions to asteroids, Earth-Moon Lagrangian point and Mars.

Mosquito vector diversity across habitats in central Thailand endemic for dengue and other arthropod-borne diseases.

PubMed

Thongsripong, Panpim; Green, Amy; Kittayapong, Pattamaporn; Kapan, Durrell; Wilcox, Bruce; Bennett, Shannon

2013-01-01

Recent years have seen the greatest ecological disturbances of our times, with global human expansion, species and habitat loss, climate change, and the emergence of new and previously-known infectious diseases. Biodiversity loss affects infectious disease risk by disrupting normal relationships between hosts and pathogens. Mosquito-borne pathogens respond to changing dynamics on multiple transmission levels and appear to increase in disturbed systems, yet current knowledge of mosquito diversity and the relative abundance of vectors as a function of habitat change is limited. We characterize mosquito communities across habitats with differing levels of anthropogenic ecological disturbance in central Thailand. During the 2008 rainy season, adult mosquito collections from 24 sites, representing 6 habitat types ranging from forest to urban, yielded 62,126 intact female mosquitoes (83,325 total mosquitoes) that were assigned to 109 taxa. Female mosquito abundance was highest in rice fields and lowest in forests. Diversity indices and rarefied species richness estimates indicate the mosquito fauna was more diverse in rural and less diverse in rice field habitats, while extrapolated estimates of true richness (Chao1 and ACE) indicated higher diversity in the forest and fragmented forest habitats and lower diversity in the urban. Culex sp. (Vishnui subgroup) was the most common taxon found overall and the most frequent in fragmented forest, rice field, rural, and suburban habitats. The distributions of species of medical importance differed significantly across habitat types and were always lowest in the intact, forest habitat. The relative abundance of key vector species, Aedes aegypti and Culex quinquefasciatus, was negatively correlated with diversity, suggesting that direct species interactions and/or habitat-mediated factors differentially affecting invasive disease vectors may be important mechanisms linking biodiversity loss to human health. Our results are an important first step for understanding the dynamics of mosquito vector distributions under changing environmental features across landscapes of Thailand.

Mosquito Vector Diversity across Habitats in Central Thailand Endemic for Dengue and Other Arthropod-Borne Diseases

PubMed Central

Thongsripong, Panpim; Green, Amy; Kittayapong, Pattamaporn; Kapan, Durrell; Wilcox, Bruce; Bennett, Shannon

2013-01-01

Recent years have seen the greatest ecological disturbances of our times, with global human expansion, species and habitat loss, climate change, and the emergence of new and previously-known infectious diseases. Biodiversity loss affects infectious disease risk by disrupting normal relationships between hosts and pathogens. Mosquito-borne pathogens respond to changing dynamics on multiple transmission levels and appear to increase in disturbed systems, yet current knowledge of mosquito diversity and the relative abundance of vectors as a function of habitat change is limited. We characterize mosquito communities across habitats with differing levels of anthropogenic ecological disturbance in central Thailand. During the 2008 rainy season, adult mosquito collections from 24 sites, representing 6 habitat types ranging from forest to urban, yielded 62,126 intact female mosquitoes (83,325 total mosquitoes) that were assigned to 109 taxa. Female mosquito abundance was highest in rice fields and lowest in forests. Diversity indices and rarefied species richness estimates indicate the mosquito fauna was more diverse in rural and less diverse in rice field habitats, while extrapolated estimates of true richness (Chao1 and ACE) indicated higher diversity in the forest and fragmented forest habitats and lower diversity in the urban. Culex sp. (Vishnui subgroup) was the most common taxon found overall and the most frequent in fragmented forest, rice field, rural, and suburban habitats. The distributions of species of medical importance differed significantly across habitat types and were always lowest in the intact, forest habitat. The relative abundance of key vector species, Aedes aegypti and Culex quinquefasciatus, was negatively correlated with diversity, suggesting that direct species interactions and/or habitat-mediated factors differentially affecting invasive disease vectors may be important mechanisms linking biodiversity loss to human health. Our results are an important first step for understanding the dynamics of mosquito vector distributions under changing environmental features across landscapes of Thailand. PMID:24205420

Characterization of instream hydraulic and riparian habitat conditions and stream temperatures of the Upper White River Basin, Washington, using multispectral imaging systems

USGS Publications Warehouse

Black, Robert W.; Haggland, Alan; Crosby, Greg

2003-01-01

Instream hydraulic and riparian habitat conditions and stream temperatures were characterized for selected stream segments in the Upper White River Basin, Washington. An aerial multispectral imaging system used digital cameras to photograph the stream segments across multiple wavelengths to characterize fish habitat and temperature conditions. All imageries were georeferenced. Fish habitat features were photographed at a resolution of 0.5 meter and temperature imageries were photographed at a 1.0-meter resolution. The digital multispectral imageries were classified using commercially available software. Aerial photographs were taken on September 21, 1999. Field habitat data were collected from August 23 to October 12, 1999, to evaluate the measurement accuracy and effectiveness of the multispectral imaging in determining the extent of the instream habitat variables. Fish habitat types assessed by this method were the abundance of instream hydraulic features such as pool and riffle habitats, turbulent and non-turbulent habitats, riparian composition, the abundance of large woody debris in the stream and riparian zone, and stream temperatures. Factors such as the abundance of instream woody debris, the location and frequency of pools, and stream temperatures generally are known to have a significant impact on salmon. Instream woody debris creates the habitat complexity necessary to maintain a diverse and healthy salmon population. The abundance of pools is indicative of a stream's ability to support fish and other aquatic organisms. Changes in water temperature can affect aquatic organisms by altering metabolic rates and oxygen requirements, altering their sensitivity to toxic materials and affecting their ability to avoid predators. The specific objectives of this project were to evaluate the use of an aerial multispectral imaging system to accurately identify instream hydraulic features and surface-water temperatures in the Upper White River Basin, to use the multispectral system to help establish baseline instream/riparian habitat conditions in the study area, and to qualitatively assess the imaging system for possible use in other Puget Sound rivers. For the most part, all multispectral imagery-based estimates of total instream riffle and pool area were less than field measurements. The imagery-based estimates for riffle habitat area ranged from 35.5 to 83.3 percent less than field measurements. Pool habitat estimates ranged from 139.3 percent greater than field measurements to 94.0 percent less than field measurements. Multispectral imagery-based estimates of turbulent habitat conditions ranged from 9.3 percent greater than field measurements to 81.6 percent less than field measurements. Multispectral imagery-based estimates of non-turbulent habitat conditions ranged from 27.7 to 74.1 percent less than field measurements. The absolute average percentage of difference between field and imagery-based habitat type areas was less for the turbulent and non-turbulent habitat type categories than for pools and riffles. The estimate of woody debris by multispectral imaging was substantially different than field measurements; percentage of differences ranged from +373.1 to -100 percent. Although the total area of riffles, pools, and turbulent and non-turbulent habitat types measured in the field were all substantially higher than those estimated from the multispectral imagery, the percentage of composition of each habitat type was not substantially different between the imagery-based estimates and field measurements.

Diverse habitat use during two life stages of the critically endangered Bahama Oriole (Icterus northropi): community structure, foraging, and social interactions

PubMed Central

Hayes, William K.

2017-01-01

Our ability to prevent extinction in declining populations often depends on effective management of habitats that are disturbed through wildfire, logging, agriculture, or development. In these disturbed landscapes, the juxtaposition of multiple habitat types can be especially important to fledglings and young birds, which may leave breeding grounds in human-altered habitat for different habitats nearby that provide increased foraging opportunities, reduced competition, and higher protection from predators. In this study, we evaluated the importance of three habitat types to two life stages of the critically endangered Bahama Oriole (Icterus northropi), a synanthropic songbird endemic to Andros, The Bahamas. First, we determined the avian species composition and relative abundance of I. northropi among three major vegetation types on Andros: Caribbean pine (Pinus caribaea) forest, coppice (broadleaf dry forest), and anthropogenic areas, dominated by nonnative vegetation (farmland and developed land). We then compared the foraging strategies and social interactions of two age classes of adult Bahama Orioles in relation to differential habitat use. Bird surveys late in the Bahama Oriole’s breeding season indicated the number of avian species and Bahama Oriole density were highest in coppice. Some bird species occurring in the coppice and pine forest were never observed in agricultural or residential areas, and may be at risk if human disturbance of pine forest and coppice increases, as is occurring at a rapid pace on Andros. During the breeding season, second-year (SY) adult Bahama Orioles foraged in all vegetation types, whereas after-second-year (ASY) adults were observed foraging only in anthropogenic areas, where the species nested largely in introduced coconut palms (Cocos nucifera). Additionally, SY adults foraging in anthropogenic areas were often observed with an ASY adult, suggesting divergent habitat use for younger, unpaired birds. Other aspects of foraging (vegetation features, food-gleaning behavior, and food items) were similar for the two age classes. Older Bahama Orioles exhibited relatively higher rates of social interactions (intraspecific and interspecific pooled) in anthropogenic areas, and won more interaction outcomes compared to younger adults. Our findings concur with those of other studies indicating dry broadleaf forest is vitally important to migrating, wintering, and resident birds, including the critically endangered Bahama Oriole, which appears to depend heavily on this vegetation type during certain life stages. PMID:28652943

Habitat quality influences population distribution, individual space use and functional responses in habitat selection by a large herbivore.

PubMed

Bjørneraas, Kari; Herfindal, Ivar; Solberg, Erling Johan; Sæther, Bernt-Erik; van Moorter, Bram; Rolandsen, Christer Moe

2012-01-01

Identifying factors shaping variation in resource selection is central for our understanding of the behaviour and distribution of animals. We examined summer habitat selection and space use by 108 Global Positioning System (GPS)-collared moose in Norway in relation to sex, reproductive status, habitat quality, and availability. Moose selected habitat types based on a combination of forage quality and availability of suitable habitat types. Selection of protective cover was strongest for reproducing females, likely reflecting the need to protect young. Males showed strong selection for habitat types with high quality forage, possibly due to higher energy requirements. Selection for preferred habitat types providing food and cover was a positive function of their availability within home ranges (i.e. not proportional use) indicating functional response in habitat selection. This relationship was not found for unproductive habitat types. Moreover, home ranges with high cover of unproductive habitat types were larger, and smaller home ranges contained higher proportions of the most preferred habitat type. The distribution of moose within the study area was partly related to the distribution of different habitat types. Our study shows how distribution and availability of habitat types providing cover and high-quality food shape ungulate habitat selection and space use.

Relationship among fish assemblages and main-channel-border physical habitats in the unimpounded Upper Mississippi River

USGS Publications Warehouse

Barko, V.A.; Herzog, D.P.; Hrabik, R.A.; Scheibe, J.S.

2004-01-01

Large rivers worldwide have been altered by the construction and maintenance of navigation channels, which include extensive bank revetments, wing dikes, and levees. Using 7 years of Long-Term Resource Monitoring Program (LTRMP) data collected from the unimpounded upper Mississippi River, we investigated assemblages in two main-channel-border physical habitats-those with wing dikes and those without wing dikes. Fishes were captured using daytime electrofishing, mini-fyke netting, large hoop netting, and small hoop netting. Our objectives were to (1) assess associations among fish species richness, physical measurements, and main-channel-border physical habitats using stepwise multiple regression and indicator variables; (2) identify abundant adult and young-of-year (age-0) families in both physical habitats to further investigate assemblage composition; and (3) calculate standardized species richness estimates within each physical habitat for adult and age-0 fishes to provide additional information on community structure. We found species richness was greater at wing dikes for both adult and age-0 fishes when compared with main channel borders. Stepwise multiple regression revealed significant relationships between adult species richness and passive gear deployment (e.g,, hoop nets and mini-fyke nets), physical habitat type, and river elevation, as well as interactions between physical habitat and passive gears, and physical habitat and transparency (i.e., Secchi depth). This model explained 56% of the variance in adult species richness. Approximately 15% of the variation in age-0 species richness was explained by the sample period, sample date, transparency, physical habitat, and depth of gear deployment. Long-term impacts of river modifications on fishes have not been well documented in many large river systems and warrant further study. The findings from this study provide baseline ecological information on fish assemblages using main channel borders in the unimpounded upper Mississippi River, information that will aid managers making channel maintenance decisions in large river systems.

Partitioning mechanisms of predator interference in different habitats.

PubMed

Griffen, Blaine D; Byers, James E

2006-01-01

Prey are often consumed by multiple predator species. Predation rates on shared prey species measured in isolation often do not combine additively due to interference or facilitation among the predator species. Furthermore, the strength of predator interactions and resulting prey mortality may change with habitat type. We experimentally examined predation on amphipods in rock and algal habitats by two species of intertidal crabs, Hemigrapsus sanguineus (top predators) and Carcinus maenas (intermediate predators). Algae provided a safer habitat for amphipods when they were exposed to only a single predator species. When both predator species were present, mortality of amphipods was less than additive in both habitats. However, amphipod mortality was reduced more in rock than algal habitat because intermediate predators were less protected in rock habitat and were increasingly targeted by omnivorous top predators. We found that prey mortality in general was reduced by (1) altered foraging behavior of intermediate predators in the presence of top predators, (2) top predators switching to foraging on intermediate predators rather than shared prey, and (3) density reduction of intermediate predators. The relative importance of these three mechanisms was the same in both habitats; however, the magnitude of each was greater in rock habitat. Our study demonstrates that the strength of specific mechanisms of interference between top and intermediate predators can be quantified but cautions that these results may be habitat specific.

From ground pools to treeholes: convergent evolution of habitat and phenotype in Aedes mosquitoes.

PubMed

Soghigian, John; Andreadis, Theodore G; Livdahl, Todd P

2017-12-19

Invasive mosquito species are responsible for millions of vector-borne disease cases annually. The global invasive success of Aedes mosquitoes such as Aedes aegypti and Aedes albopictus has relied on the human transport of immature stages in container habitats. However, despite the importance of these mosquitoes and this ecological specialization to their widespread dispersal, evolution of habitat specialization in this group has remained largely unstudied. We use comparative methods to evaluate the evolution of habitat specialization and its potential influence on larval morphology, and evaluate whether container dwelling and invasiveness are monophyletic in Aedes. We show that habitat specialization has evolved repeatedly from ancestral ground pool usage to specialization in container habitats. Furthermore, we find that larval morphological scores are significantly associated with larval habitat when accounting for evolutionary relationships. We find that Ornstein-Uhleinbeck models with unique optima for each larval habitat type are preferred over several other models based predominantly on neutral processes, and that OU models can reliably simulate real morphological data. Our results demonstrate that multiple lineages of Aedes have convergently evolved a key trait associated with invasive success: the use of container habitats for immature stages. Moreover, our results demonstrate convergence in morphological characteristics as well, and suggest a role of adaptation to habitat specialization in driving phenotypic diversity in this mosquito lineage. Finally, our results highlight that the genus Aedes is not monophyletic.

Development of a spatially universal framework for classifying stream assemblages with application to conservation planning for Great Lakes lotic fish communities

USGS Publications Warehouse

McKenna, James E.; Schaeffer, Jeffrey S.; Stewart, Jana S.; Slattery, Michael T.

2015-01-01

Classifications are typically specific to particular issues or areas, leading to patchworks of subjectively defined spatial units. Stream conservation is hindered by the lack of a universal habitat classification system and would benefit from an independent hydrology-guided spatial framework of units encompassing all aquatic habitats at multiple spatial scales within large regions. We present a system that explicitly separates the spatial framework from any particular classification developed from the framework. The framework was constructed from landscape variables that are hydrologically and biologically relevant, covered all space within the study area, and was nested hierarchically and spatially related at scales ranging from the stream reach to the entire region; classifications may be developed from any subset of the 9 basins, 107 watersheds, 459 subwatersheds, or 10,000s of valley segments or stream reaches. To illustrate the advantages of this approach, we developed a fish-guided classification generated from a framework for the Great Lakes region that produced a mosaic of habitat units which, when aggregated, formed larger patches of more general conditions at progressively broader spatial scales. We identified greater than 1,200 distinct fish habitat types at the valley segment scale, most of which were rare. Comparisons of biodiversity and species assemblages are easily examined at any scale. This system can identify and quantify habitat types, evaluate habitat quality for conservation and/or restoration, and assist managers and policymakers with prioritization of protection and restoration efforts. Similar spatial frameworks and habitat classifications can be developed for any organism in any riverine ecosystem.

Modeling trade-offs between plant fiber and toxins: a framework for quantifying risks perceived by foraging herbivores.

PubMed

Camp, Meghan J; Shipley, Lisa A; Johnson, Timothy R; Forbey, Jennifer Sorensen; Rachlow, Janet L; Crowell, Miranda M

2015-12-01

When selecting habitats, herbivores must weigh multiple risks, such as predation, starvation, toxicity, and thermal stress, forcing them to make fitness trade-offs. Here, we applied the method of paired comparisons (PC) to investigate how herbivores make trade-offs between habitat features that influence selection of food patches. The method of PC measures utility and the inverse of utility, relative risk, and makes trade-offs and indifferences explicit by forcing animals to make choices between two patches with different types of risks. Using a series of paired-choice experiments to titrate the equivalence curve and find the marginal rate of substitution for one risk over the other, we evaluated how toxin-tolerant (pygmy rabbit Brachylagus idahoensis) and fiber-tolerant (mountain cottontail rabbit Sylviagus nuttallii) herbivores differed in their hypothesized perceived risk of fiber and toxins in food. Pygmy rabbits were willing to consume nearly five times more of the toxin 1,8-cineole in their diets to avoid consuming higher levels of fiber than were mountain cottontails. Fiber posed a greater relative risk for pygmy rabbits than cottontails and cineole a greater risk for cottontails than pygmy rabbits. Our flexible modeling approach can be used to (1) quantify how animals evaluate and trade off multiple habitat attributes when the benefits and risks are difficult to quantify, and (2) integrate diverse risks that influence fitness and habitat selection into a single index of habitat value. This index potentially could be applied to landscapes to predict habitat selection across several scales.

A geospatial modelling approach to predict seagrass habitat recovery under multiple stressor regimes

EPA Science Inventory

Restoration of estuarine seagrass habitats requires a clear understanding of the modes of action of multiple interacting stressors including nutrients, climate change, coastal land-use change, and habitat modification. We have developed and demonstrated a geospatial modeling a...

Paleoecological reconstruction of hominin-bearing middle Pliocene localities at Woranso-Mille, Ethiopia.

PubMed

Curran, Sabrina C; Haile-Selassie, Yohannes

2016-07-01

Woranso-Mille is a paleoanthropological site in Ethiopia sampling an important and under-represented time period in human evolution (3.8-3.6 million years ago). Specimens of cf. Australopithecus anamensis, Australopithecus afarensis, and the recently named Australopithecus deyiremeda have been recovered from this site. Using multiple habitat proxies, this study provides a paleoecological reconstruction of two fossiliferous collection areas from Woranso-Mille, Aralee Issie (ARI) and Mesgid Dora (MSD). Previous reconstructions based on faunal assemblages have pointed, due to the presence of aepycerotins, alcelaphins, and proboscideans, to the existence of open habitats as well as more closed ones, based on the occurrence of cercopithecids, giraffids, and traglephins. Results from community structure analysis (proportions of locomotor and dietary adaptations) at ARI and MSD indicated a predominance of open habitats, such as shrublands. Mesowear analysis revealed that ungulates of all dietary types (grazers, leaf and fruit browsers, and mixed feeders) were present in nearly equal proportions. Ecomorphological analyses using linear measurements of the astragalus and phalanges indicated that bovids utilizing locomotor behaviors associated with all habitat types were present, though the intermediate-cover habitat bovids were best represented in the sample (Heavy cover at ARI and Light cover at MSD). Together, these results suggest that the ARI and MSD localities were heterogeneous habitats (mosaics), likely with densely vegetated areas along a paleo-river and more open regions (woodlands, grasslands) available away from the river. Copyright © 2016 Elsevier Ltd. All rights reserved.

Species Composition and Seasonal Distribution of Mosquito Larvae (Diptera: Culicidae) in Southern New Jersey, Burlington County.

PubMed

Verna, Thomas N

2015-09-01

A total of 36,495 larvae consisting of 45 species from 11 genera were collected from 7,189 sites from southern New Jersey, Burlington County between the months of March and October, 2001-2014. Density and seasonal distribution were determined among natural and artificial habitat. The most dominant species collected from natural habitat was Aedes vexans (Meigen) followed by Ochlerotatus canadensis canadensis (Theobald), Culex restuans Theobald, Culex pipiens L., and Culex territans Walker. The most dominant species collected from artificial habitat was Aedes albopictus (Skuse) followed by Ochlerotatus japonicus japonicus (Theobald), Cx. restuans, Cx. pipiens, and Ochlerotatus triseriatus (Say). Cx. restuans and Cx. pipiens were the only species categorized as dominant among both natural and artificial habitat and comprised greater than half the total density. Sympatry was common among dominant species from artificial habitat where a significant percentage of the total collection contained multiple species. The most common types of natural habitats were forested depressions and stream flood plains whereas rimless vehicle tires and various plastic containers were the most common artificial habitats. The pitcher plant Sarracenia purpurea L. was the only habitat exclusive to one species. © The Authors 2015. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Habitat segregation of mosquito arbovirus vectors in south Florida.

PubMed

Rey, Jorge R; Nishimura, Naoya; Wagner, Billi; Braks, Marieta A H; O'Connell, Sheila M; Lounibos, L Philip

2006-11-01

Oviposition traps set in rural to urban environments in three south Florida counties were colonized predominantly by Culex quinquefasciatus Say (35.1%), Aedes albopictus (Skuse) (34.5%), Aedes aegypti (L.) (23.8%), and Culex nigripalpus Theobald (6.6%) during 1 yr of monthly sampling. Significant differences were detected among counties for abundances of Cx. quinquefasciatus and for percentage composition of that species and Ae. albopictus. Aerial images of habitats around each collection site were digitized, and coverages by each of 16 habitat variables were recorded. Abundances ofAe. aegypti were positively related to habitat variables associated with urbanization and negatively correlated to those reflecting rural characteristics. Multiple regression models of habitat selection explained similar proportions of variances in abundance of Ae. aegypti and Ae. albopictus, but signs of significant variables were opposite for these two species. No consistent trends of habitat associations were observed among counties for the two Culex spp. Co-occurrences of the four species in individual traps depended on container type (tub versus cup), and, for Aedes spp. with Culex spp., county. The results underscore the importance of scale in evaluating habitat selection and the utility of quantifiable habitat characteristics of intermediate scale to identify site characteristics favored by the arboviral vectors Ae. aegypti and Ae. albopictus.

Combining Monitoring Data Spanning Multiple Temporal and Spatial Scales To Evaluate Water Quality Affecting Seagrass Habitat Extent in northwest Florida Estuaries

EPA Science Inventory

The ability to understand and manage ecological changes caused by anthropogenic stressors is often impeded by a lack of sufficient information to resolve pattern and change with sufficient resolution and extent. Increasingly, different types of environmental data are available t...

Previous land use and invasive species impacts on long-term afforestation success

Treesearch

Joshua B. Nickelson; Eric J. Holzmueller; John W. Groninger; Damon B. Lesmeister

2015-01-01

The conversion of agricultural lands to forests has increased worldwide over the past few decades for multiple reasons including increasing forest connectivity and wildlife habitat. However, previous land cover and competing vegetation often impede afforestation. We established 219 plots in 29 Quercus plantations on four previous land cover types (...

Can the California forest practice rules adapt to address conifer encroachment?

Treesearch

Yana Valachovic; Lenya Quinn-Davidson; Richard B. Standiford

2015-01-01

The loss of oak woodlands to conifer encroachment is widely recognized as a major conservation concern. The increased occupancy of oak woodlands by Douglas-fir (Pseudotsuga menziesii) and other conifers has been reported throughout portions of California and the Pacific Northwest in multiple oak habitat types. In California, Oregon white oak (

Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism.

PubMed

Graham, Emily B; Crump, Alex R; Resch, Charles T; Fansler, Sarah; Arntzen, Evan; Kennedy, David W; Fredrickson, Jim K; Stegen, James C

2016-01-01

Community assembly processes generate shifts in species abundances that influence ecosystem cycling of carbon and nutrients, yet our understanding of assembly remains largely separate from ecosystem-level functioning. Here, we investigate relationships between assembly and changes in microbial metabolism across space and time in hyporheic microbial communities. We pair sampling of two habitat types (i.e., attached and planktonic) through seasonal and sub-hourly hydrologic fluctuation with null modeling and temporally explicit multivariate statistics. We demonstrate that multiple selective pressures-imposed by sediment and porewater physicochemistry-integrate to generate changes in microbial community composition at distinct timescales among habitat types. These changes in composition are reflective of contrasting associations of Betaproteobacteria and Thaumarchaeota with ecological selection and with seasonal changes in microbial metabolism. We present a conceptual model based on our results in which metabolism increases when oscillating selective pressures oppose temporally stable selective pressures. Our conceptual model is pertinent to both macrobial and microbial systems experiencing multiple selective pressures and presents an avenue for assimilating community assembly processes into predictions of ecosystem-level functioning.

Understanding Existing Salmonid Habitat Availability and Connectivity to Improve River Management

NASA Astrophysics Data System (ADS)

Duffin, J.; Yager, E.; Tonina, D.; Benjankar, R. M.

2017-12-01

In the Pacific Northwest river restoration is common for salmon conservation. Mangers need methods to help target restoration to problem areas in rivers to create habitat that meets a species' needs. Hydraulic models and habitat suitability curves provide basic information on habitat availability and overall quality, but these analyses need to be expanded to address habitat quality based on the accessibility of habitats required for multiple life stages. Scientists are starting to use connectivity measurements to understand the longitudinal proximity of habitat patches, which can be used to address the habitat variability of a reach. By evaluating the availability and quality of habitat and calculating the connectivity between complementary habitats, such as spawning and rearing habitats, we aim to identify areas that should be targeted for restoration. To meet these goals, we assessed Chinook salmon habitat on the Lemhi River in Idaho. The depth and velocity outputs from a 2D hydraulic model are used in conjunction with locally created habitat suitability curves to evaluate the availability and quality of habitat for multiple Chinook salmon life stages. To assess the variability of the habitat, connectivity between habitat patches necessary for different life stages is calculated with a proximity index. A spatial representation of existing habitat quality and connectivity between complimentary habitats can be linked to river morphology by the evaluation of local geomorphic characteristics, including sinuosity and channel units. The understanding of the current habitat availability for multiple life stage needs, the connectivity between these habitat patches, and their relationship with channel morphology can help managers better identify restoration needs and direct their limited resources.

High urban population density of birds reflects their timing of urbanization.

PubMed

Møller, Anders Pape; Diaz, Mario; Flensted-Jensen, Einar; Grim, Tomas; Ibáñez-Álamo, Juan Diego; Jokimäki, Jukka; Mänd, Raivo; Markó, Gábor; Tryjanowski, Piotr

2012-11-01

Living organisms generally occur at the highest population density in the most suitable habitat. Therefore, invasion of and adaptation to novel habitats imply a gradual increase in population density, from that at or below what was found in the ancestral habitat to a density that may reach higher levels in the novel habitat following adaptation to that habitat. We tested this prediction of invasion biology by analyzing data on population density of breeding birds in their ancestral rural habitats and in matched nearby urban habitats that have been colonized recently across a continental latitudinal gradient. We estimated population density in the two types of habitats using extensive point census bird counts, and we obtained information on the year of urbanization when population density in urban habitats reached levels higher than that of the ancestral rural habitat from published records and estimates by experienced ornithologists. Both the difference in population density between urban and rural habitats and the year of urbanization were significantly repeatable when analyzing multiple populations of the same species across Europe. Population density was on average 30 % higher in urban than in rural habitats, although density reached as much as 100-fold higher in urban habitats in some species. Invasive urban bird species that colonized urban environments over a long period achieved the largest increases in population density compared to their ancestral rural habitats. This was independent of whether species were anciently or recently urbanized, providing a unique cross-validation of timing of urban invasions. These results suggest that successful invasion of urban habitats was associated with gradual adaptation to these habitats as shown by a significant increase in population density in urban habitats over time.

The influence of habitat on the evolution of plants: a case study across Saxifragales.

PubMed

de Casas, Rafael Rubio; Mort, Mark E; Soltis, Douglas E

2016-12-01

Organismal evolution tends to be closely associated with ecological conditions. However, the extent to which this association constrains adaptation or diversification into new habitats remains unclear. We studied habitat evolution in the hyper-diverse angiosperm clade Saxifragales. We used species-level phylogenies for approx. 950 species to analyse the evolution of habitat shifts as well as their influence on plant diversification. We combined habitat characterization based on floristic assignments and state-of-the art phylogenetic comparative methods to estimate within- and across-habitat diversification patterns. Our analyses showed that Saxifragales diversified into multiple habitats from a forest-inhabiting ancestor and that this diversification is governed by relatively rare habitat shifts. Lineages are likely to stay within inferred ancestral ecological conditions. Adaptation to some habitat types (e.g. aquatic, desert) may be canalizing events that lineages do not escape. Although associations between increased diversification rates and shifts in habitat preferences are occasionally observed, extreme macroevolutionary rates are closely associated with specific habitats. Lineages occurring in shrubland, and especially tundra and rock cliffs, exhibit comparatively high diversification, whereas forest, grassland, desert and aquatic habitats are associated with low diversification. The likelihood of occupation of new habitats appears to be asymmetric. Shifts to aquatic and desert habitats may be canalizing events. Other habitats, such as tundra, might act as evolutionary sources, while forests provide the only habitat seemingly colonized easily by lineages originating elsewhere. However, habitat shifts are very rare, and any major environmental alteration is expected to have dramatic evolutionary consequences. © The Author 2016. Published by Oxford University Press on behalf of the Annals of Botany Company.

Habitat Evaluation Procedures (HEP) Report : Rainwater Wildlife Area, 1998-2001 Technical Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Childs, Allen

The 8,768 acre Rainwater Wildlife Area was acquired in September 1998 by the Confederated Tribes of the Umatilla Indian Reservation (CTUIR) through an agreement with Bonneville Power Administration (BPA) to partially offset habitat losses associated with construction of the John Day and McNary hydroelectric facilities on the mainstem Columbia River. U.S. Fish and Wildlife Service (USFWS) Habitat Evaluation Procedures (HEP) were used to determine the number of habitat units credited to BPA for acquired lands. Upland and riparian forest, upland and riparian shrub, and grassland rover types are evaluated in this study. Targeted wildlife species include downy woodpecker (Picoides pubescens),more » black-capped chickadee (Parus atricopillus), blue grouse (Dendragapus obscurus), great blue heron (Ardea herodias), yellow warbler (Dendroica petechia), mink (Mustela vison), and Western meadowlark (Sturnella neglects). Habitat surveys were conducted in 1998 and 1999 in accordance with published HEP protocols and included 65,300, 594m{sup 2} plots, and 112 one-tenth-acre plots. Between 153.3 and 7,187.46 acres were evaluated for each target wildlife mitigation species. Derived habitat suitability indices were multiplied by corresponding cover-type acreages to determine the number of habitat units for each species. The total baseline habitat units credited to BPA for the Rainwater Wildlife Area and its seven target species is 5,185.3 habitat units. Factors limiting habitat suitability are related to the direct, indirect, and cumulative effects of past livestock grazing, road construction, and timber harvest which have simplified the structure, composition, and diversity of native plant communities. Alternatives for protecting and improving habitat suitability include exclusion of livestock grazing, road de-commissioning/obliteration, reforestation and thinning, control of competing and unwanted vegetation (including noxious weeds), reestablishing displaced or reduced native vegetation species, allowance of normative processes such as fire occurrence, and facilitating development of natural stable stream channels and associated floodplains. Implementation of habitat enhancement and restoration activities could generate an additional 1,850 habitat units in 10 years. Baseline and estimated future habitat units total 7,035.3 for the Rainwater Wildlife Area. Habitat protection, enhancement and restoration will require long-term commitments from managers to increase probabilities of success and meet the goals and objectives of the Northwest Power Planning Council's Fish and Wildlife Mitigation Program. Longer-term benefits of protection and enhancement activities include increases in native species diversity and plant community resiliency in all cover types. Watershed conditions, including floodplain/riparian, and instream habitat quality should improve as well providing multiple benefits for terrestrial and aquatic resources. While such benefits are not necessarily recognized by HEP models and reflected in the number of habitat units generated, they are consistent with the NPPC Fish and Wildlife Program.« less

Habitat-dependent olfactory discrimination in three-spined sticklebacks (Gasterosteus aculeatus).

PubMed

Hiermes, Meike; Mehlis, Marion; Rick, Ingolf P; Bakker, Theo C M

2015-07-01

The ability to recognize conspecifics is indispensible for differential treatment of particular individuals in social contexts like grouping behavior. The advantages of grouping are multifarious, and there exist numerous additional benefits of joining aggregations of conspecifics. Recognition is based on different signals and transmitted via multiple channels, among others the olfactory channel. The sensory system or the combination of sensory modalities used in recognition processes is highly dependent on the availability and effectiveness of modalities, which are a function of the environmental conditions. Using F1-generations of six three-spined stickleback (Gasterosteus aculeatus) populations from two habitat types (tea-stained and clear-water lakes) from the Outer Hebrides, Scotland, we investigated whether individuals are able to recognize members of their own population solely based on olfactory cues and whether the habitat type an individual originated from had an influence on its recognition abilities. When given the choice (own vs. foreign population) sticklebacks from tea-stained lakes significantly preferred the odor of their own population, whereas fish from clear-water habitats did not show any preference. Moreover, fish from the two habitat types differed significantly in their recognition abilities, indicating that olfactory communication is better developed when visual signaling is disturbed. Thus, the observed odor preferences appear to be the consequence of different selective constraints and adaptations as a result of the differences in environmental conditions that have acted on the parental generations. These adaptations are likely genetically based as the differences are present in the F1-generation that had been reared under identical laboratory conditions.

Additive effects prevail: The response of biota to multiple stressors in an intensively monitored watershed.

PubMed

Gieswein, Alexander; Hering, Daniel; Feld, Christian K

2017-09-01

Freshwater ecosystems are impacted by a range of stressors arising from diverse human-caused land and water uses. Identifying the relative importance of single stressors and understanding how multiple stressors interact and jointly affect biology is crucial for River Basin Management. This study addressed multiple human-induced stressors and their effects on the aquatic flora and fauna based on data from standard WFD monitoring schemes. For altogether 1095 sites within a mountainous catchment, we used 12 stressor variables covering three different stressor groups: riparian land use, physical habitat quality and nutrient enrichment. Twenty-one biological metrics calculated from taxa lists of three organism groups (fish, benthic invertebrates and aquatic macrophytes) served as response variables. Stressor and response variables were subjected to Boosted Regression Tree (BRT) analysis to identify stressor hierarchy and stressor interactions and subsequently to Generalised Linear Regression Modelling (GLM) to quantify the stressors standardised effect size. Our results show that riverine habitat degradation was the dominant stressor group for the river fauna, notably the bed physical habitat structure. Overall, the explained variation in benthic invertebrate metrics was higher than it was in fish and macrophyte metrics. In particular, general integrative (aggregate) metrics such as % Ephemeroptera, Plecoptera and Trichoptera (EPT) taxa performed better than ecological traits (e.g. % feeding types). Overall, additive stressor effects dominated, while significant and meaningful stressor interactions were generally rare and weak. We concluded that given the type of stressor and ecological response variables addressed in this study, river basin managers do not need to bother much about complex stressor interactions, but can focus on the prevailing stressors according to the hierarchy identified. Copyright © 2017 Elsevier B.V. All rights reserved.

Widespread and persistent invasions of terrestrial habitats coincident with larval feeding behavior transitions during snail-killing fly evolution (Diptera: Sciomyzidae).

PubMed

Chapman, Eric G; Przhiboro, Andrey A; Harwood, James D; Foote, Benjamin A; Hoeh, Walter R

2012-09-10

Transitions in habitats and feeding behaviors were fundamental to the diversification of life on Earth. There is ongoing debate regarding the typical directionality of transitions between aquatic and terrestrial habitats and the mechanisms responsible for the preponderance of terrestrial to aquatic transitions. Snail-killing flies (Diptera: Sciomyzidae) represent an excellent model system to study such transitions because their larvae display a range of feeding behaviors, being predators, parasitoids or saprophages of a variety of mollusks in freshwater, shoreline and dry terrestrial habitats. The remarkable genus Tetanocera (Tetanocerini) occupies five larval feeding groups and all of the habitat types mentioned above. This study has four principal objectives: (i) construct a robust estimate of phylogeny for Tetanocera and Tetanocerini, (ii) estimate the evolutionary transitions in larval feeding behaviors and habitats, (iii) test the monophyly of feeding groups and (iv) identify mechanisms underlying sciomyzid habitat and feeding behavior evolution. Bayesian inference and maximum likelihood analyses of molecular data provided strong support that the Sciomyzini, Tetanocerini and Tetanocera are monophyletic. However, the monophyly of many behavioral groupings was rejected via phylogenetic constraint analyses. We determined that (i) the ancestral sciomyzid lineage was terrestrial, (ii) there was a single terrestrial to aquatic habitat transition early in the evolution of the Tetanocerini and (iii) there were at least 10 independent aquatic to terrestrial habitat transitions and at least 15 feeding behavior transitions during tetanocerine phylogenesis. The ancestor of Tetanocera was aquatic with five lineages making independent transitions to terrestrial habitats and seven making independent transitions in feeding behaviors. The preponderance of aquatic to terrestrial transitions in sciomyzids goes against the trend generally observed across eukaryotes. Damp shoreline habitats are likely transitional where larvae can change habitat but still have similar prey available. Transitioning from aquatic to terrestrial habitats is likely easier than the reverse for sciomyzids because morphological characters associated with air-breathing while under the water's surface are lost rather than gained, and sciomyzids originated and diversified during a general drying period in Earth's history. Our results imply that any animal lineage having aquatic and terrestrial members, respiring the same way in both habitats and having the same type of food available in both habitats could show a similar pattern of multiple independent habitat transitions coincident with changes in behavioral and morphological traits.

Widespread and persistent invasions of terrestrial habitats coincident with larval feeding behavior transitions during snail-killing fly evolution (Diptera: Sciomyzidae)

PubMed Central

2012-01-01

Background Transitions in habitats and feeding behaviors were fundamental to the diversification of life on Earth. There is ongoing debate regarding the typical directionality of transitions between aquatic and terrestrial habitats and the mechanisms responsible for the preponderance of terrestrial to aquatic transitions. Snail-killing flies (Diptera: Sciomyzidae) represent an excellent model system to study such transitions because their larvae display a range of feeding behaviors, being predators, parasitoids or saprophages of a variety of mollusks in freshwater, shoreline and dry terrestrial habitats. The remarkable genus Tetanocera (Tetanocerini) occupies five larval feeding groups and all of the habitat types mentioned above. This study has four principal objectives: (i) construct a robust estimate of phylogeny for Tetanocera and Tetanocerini, (ii) estimate the evolutionary transitions in larval feeding behaviors and habitats, (iii) test the monophyly of feeding groups and (iv) identify mechanisms underlying sciomyzid habitat and feeding behavior evolution. Results Bayesian inference and maximum likelihood analyses of molecular data provided strong support that the Sciomyzini, Tetanocerini and Tetanocera are monophyletic. However, the monophyly of many behavioral groupings was rejected via phylogenetic constraint analyses. We determined that (i) the ancestral sciomyzid lineage was terrestrial, (ii) there was a single terrestrial to aquatic habitat transition early in the evolution of the Tetanocerini and (iii) there were at least 10 independent aquatic to terrestrial habitat transitions and at least 15 feeding behavior transitions during tetanocerine phylogenesis. The ancestor of Tetanocera was aquatic with five lineages making independent transitions to terrestrial habitats and seven making independent transitions in feeding behaviors. Conclusions The preponderance of aquatic to terrestrial transitions in sciomyzids goes against the trend generally observed across eukaryotes. Damp shoreline habitats are likely transitional where larvae can change habitat but still have similar prey available. Transitioning from aquatic to terrestrial habitats is likely easier than the reverse for sciomyzids because morphological characters associated with air-breathing while under the water's surface are lost rather than gained, and sciomyzids originated and diversified during a general drying period in Earth's history. Our results imply that any animal lineage having aquatic and terrestrial members, respiring the same way in both habitats and having the same type of food available in both habitats could show a similar pattern of multiple independent habitat transitions coincident with changes in behavioral and morphological traits. PMID:22963084

The relationship between habitat complexity and nursery provision for an estuarine-dependent fish species in a permanently open South African Estuary

NASA Astrophysics Data System (ADS)

Leslie, Timothy; James, Nicola C.; Potts, Warren M.; Rajkaran, Anusha

2017-11-01

Estuarine-dependent marine fish species rely on shallow, sheltered and food rich habitats for protection from predators, growth and ultimately recruitment to adult populations. Hence, habitats within estuaries function as critical nursery areas for an abundance of fish species. However, these habitats vary in the degree of nursery function they provide and few studies have quantitatively assessed the relative nursery value of different habitat types within estuaries, particularly in the context of habitat complexity. This study aimed to assess the nursery value of the dominant vegetated habitats, namely the submergent Zostera capensis (Setch.) (seagrass) beds and emergent Spartina maritima (Curtis) Fernald (salt marsh) beds in the Bushmans Estuary, South Africa. Biomass and stem density were sampled seasonally in order to gain insight into the vegetation dynamics of seagrass and salt marsh beds. Aerial cover, canopy height and underwater camera imagery were used to develop multiple complexity indices for prioritizing habitat complexity. The relatively consistent results of the dimensionless indices (interstitial space indices and fractal geometry) suggest that Z. capensis exhibits an overall greater degree of complexity than S. maritima, and hence it can be expected that fish abundance is likely to be higher in Z. capensis beds than in S. maritima habitats. Underwater video cameras were deployed in seagrass, salt marsh and sand flat habitats to assess the relative abundance and behaviour of the estuarine-dependent sparid Rhabosargus holubi (Steindachner 1881) in different habitats. The relative abundance of R. holubi was significantly higher in Z. capensis seagrass than S. maritima salt marsh and sand flats, whilst the behaviour of R. holubi indicated a high degree of habitat use in structured habitats (both Z. capensis and S. martima) and a low degree of habitat use in unstructured sand flat habitats.

Fire management, managed relocation, and land conservation options for long-lived obligate seeding plants under global changes in climate, urbanization, and fire regime.

PubMed

Bonebrake, Timothy C; Syphard, Alexandra D; Franklin, Janet; Anderson, Kurt E; Akçakaya, H Resit; Mizerek, Toni; Winchell, Clark; Regan, Helen M

2014-08-01

Most species face multiple anthropogenic disruptions. Few studies have quantified the cumulative influence of multiple threats on species of conservation concern, and far fewer have quantified the potential relative value of multiple conservation interventions in light of these threats. We linked spatial distribution and population viability models to explore conservation interventions under projected climate change, urbanization, and changes in fire regime on a long-lived obligate seeding plant species sensitive to high fire frequencies, a dominant plant functional type in many fire-prone ecosystems, including the biodiversity hotspots of Mediterranean-type ecosystems. First, we investigated the relative risk of population decline for plant populations in landscapes with and without land protection under an existing habitat conservation plan. Second, we modeled the effectiveness of relocating both seedlings and seeds from a large patch with predicted declines in habitat area to 2 unoccupied recipient patches with increasing habitat area under 2 projected climate change scenarios. Finally, we modeled 8 fire return intervals (FRIs) approximating the outcomes of different management strategies that effectively control fire frequency. Invariably, long-lived obligate seeding populations remained viable only when FRIs were maintained at or above a minimum level. Land conservation and seedling relocation efforts lessened the impact of climate change and land-use change on obligate seeding populations to differing degrees depending on the climate change scenario, but neither of these efforts was as generally effective as frequent translocation of seeds. While none of the modeled strategies fully compensated for the effects of land-use and climate change, an integrative approach managing multiple threats may diminish population declines for species in complex landscapes. Conservation plans designed to mitigate the impacts of a single threat are likely to fail if additional threats are ignored. © 2014 Society for Conservation Biology.

Conflation and aggregation of spatial data improve predictive models for species with limited habitats: a case of the threatened yellow-billed cuckoo in Arizona, USA

USGS Publications Warehouse

Villarreal, Miguel L.; van Riper, Charles; Petrakis, Roy E.

2013-01-01

Riparian vegetation provides important wildlife habitat in the Southwestern United States, but limited distributions and spatial complexity often leads to inaccurate representation in maps used to guide conservation. We test the use of data conflation and aggregation on multiple vegetation/land-cover maps to improve the accuracy of habitat models for the threatened western yellow-billed cuckoo (Coccyzus americanus occidentalis). We used species observations (n = 479) from a state-wide survey to develop habitat models from 1) three vegetation/land-cover maps produced at different geographic scales ranging from state to national, and 2) new aggregate maps defined by the spatial agreement of cover types, which were defined as high (agreement = all data sets), moderate (agreement ≥ 2), and low (no agreement required). Model accuracies, predicted habitat locations, and total area of predicted habitat varied considerably, illustrating the effects of input data quality on habitat predictions and resulting potential impacts on conservation planning. Habitat models based on aggregated and conflated data were more accurate and had higher model sensitivity than original vegetation/land-cover, but this accuracy came at the cost of reduced geographic extent of predicted habitat. Using the highest performing models, we assessed cuckoo habitat preference and distribution in Arizona and found that major watersheds containing high-probably habitat are fragmented by a wide swath of low-probability habitat. Focus on riparian restoration in these areas could provide more breeding habitat for the threatened cuckoo, offset potential future habitat losses in adjacent watershed, and increase regional connectivity for other threatened vertebrates that also use riparian corridors.

Application of models to conservation planning for terrestrial birds in North America

USGS Publications Warehouse

Fitzgerald, Jane A.; Thogmartin, Wayne E.; Dettmers, Randy; Jones, Tim; Rustay, Christopher; Ruth, Janet M.; Thompson, Frank R.; Will, Tom; Millspaugh, Joshua J.; Thompson, Frank R.

2009-01-01

Partners in Flight (PIF), a public–private coalition for the conservation of land birds, has developed one of four international bird conservation plans recognized under the auspices of the North American Bird Conservation Initiative (NABCI). Partners in Flight prioritized species most in need of conservation attention and set range-wide population goals for 448 species of terrestrial birds. Partnerships are now tasked with developing spatially explicit estimates of the distribution, and abundance of priority species across large ecoregions and identifying habitat acreages needed to support populations at prescribed levels. The PIF Five Elements process of conservation design identifies five steps needed to implement all bird conservation at the ecoregional scale. Habitat assessment and landscape characterization describe the current amounts of different habitat types and summarize patch characteristics, and landscape configurations that define the ability of a landscape to sustain healthy bird populations and are a valuable first step to describing the planning area before pursuing more complex species-specific models. Spatially linked database models, landscape-scale habitat suitability models, and statistical models are viable alternatives for predicting habitat suitability or bird abundance across large planning areas to help assess conservation opportunities, design landscapes to meet population objectives, and monitor change in habitat suitability or bird numbers over time.Bird conservation in the United States is a good example of the use of models in large-scale wildlife conservation planning because of its geographic extent, focus on multiple species, involvement of multiple partners, and use of simple to complex models. We provide some background on the recent development of bird conservation initiatives in the United States and the approaches used for regional conservation assessment and planning. We focus on approaches being used for landscape characterization and assessment, and bird population response modeling.

Habitat selection by Mexican Spotted Owls in Northern Arizona

Treesearch

Joseph L. Ganey; Russell P. Balda

1994-01-01

We compared use of seven habitat types to availability of those types within the home ranges of eight radio-tagged Mexican Spotted Owls (Strix occidentalis lucida). When all habitat types were considered simultaneously, habitat use differed from habitat availability for each owl. Patterns of habitat use varied among individuals and with respect to...

Land-Use Change Alters Host and Vector Communities and May Elevate Disease Risk.

PubMed

Guo, Fengyi; Bonebrake, Timothy C; Gibson, Luke

2018-04-24

Land-use change has transformed most of the planet. Concurrently, recent outbreaks of various emerging infectious diseases have raised great attention to the health consequences of anthropogenic environmental degradation. Here, we assessed the global impacts of habitat conversion and other land-use changes on community structures of infectious disease hosts and vectors, using a meta-analysis of 37 studies. From 331 pairwise comparisons of disease hosts/vectors in pristine (undisturbed) and disturbed areas, we found a decrease in species diversity but an increase in body size associated with land-use changes, potentially suggesting higher risk of infectious disease transmission in disturbed habitats. Neither host nor vector abundance, however, changed significantly following disturbance. When grouped by subcategories like disturbance type, taxonomic group, pathogen type and region, changes in host/vector community composition varied considerably. Fragmentation and agriculture in particular benefit host and vector communities and therefore might elevate disease risk. Our results indicate that while habitat disturbance could alter disease host/vector communities in ways that exacerbate pathogen prevalence, the relationship is highly context-dependent and influenced by multiple factors.

Habitat characteristics affecting fish assemblages on a Hawaiian coral reef

USGS Publications Warehouse

Friedlander, A.M.; Parrish, J.D.

1998-01-01

Habitat characteristics of a reef were examined as potential influences on fish assemblage structure, using underwater visual census to estimate numbers and biomass of all fishes visible on 42 benthic transects and making quantitative measurements of 13 variables of the corresponding physical habitat and sessile biota. Fish assemblages in the diverse set of benthic habitats were grouped by detrended correspondence analysis, and associated with six major habitat types. Statistical differences were shown between a number of these habitat types for various ensemble variables of the fish assemblages. Overall, both for complete assemblages and for component major trophic and mobility guilds, these variables tended to have higher values where reef substratum was more structurally or topographically complex, and closer to reef edges. When study sites were separately divided into five depth strata, the deeper strata tended to have statistically higher values of ensemble variables for the fish assemblages. Patterns with depth varied among the various trophic and mobility guilds. Multiple linear regression models indicated that for the complete assemblages and for most trophic and mobility guilds, a large part of the variability for most ensemble variables was explained by measures of holes in the substratum, with important contributions from measured substratum rugosity and depth. A strong linear relationship found by regression of mean fish length on mean volume of holes in the reef surface emphasized the importance of shelter for fish assemblages. Results of this study may have practical applications in designing reserve areas as well as theoretical value in helping to explain the organization of reef fish assemblages.

Landscape distribution of food and nesting sites affect larval diet and nest size, but not abundance of Osmia bicornis.

PubMed

Coudrain, Valérie; Rittiner, Sarah; Herzog, Felix; Tinner, Willy; Entling, Martin H

2016-10-01

Habitat fragmentation is a major threat for beneficial organisms and the ecosystem services they provide. Multiple-habitat users such as wild bees depend on both nesting and foraging habitat. Thus, they may be affected by the fragmentation of at least two habitat types. We investigated the effects of landscape-scale amount of and patch isolation from both nesting habitat (woody plants) and foraging habitat (specific pollen sources) on the abundance and diet of Osmia bicornis L. Trap-nests of O. bicornis were studied in 30 agricultural landscapes of the Swiss Plateau. Nesting and foraging habitats were mapped in a radius of 500 m around the sites. Pollen composition of larval diet changed as isolation to the main pollen source, Ranunculus, increased, suggesting that O. bicornis adapted its foraging strategy in function of the nest proximity to main pollen sources. Abundance of O. bicornis was neither related to isolation or amount of nesting habitat nor to isolation or abundance of food plants. Surprisingly, nests of O. bicornis contained fewer larvae in sites at forest edge compared to isolated sites, possibly due to higher parasitism risk. This study indicates that O. bicornis can nest in a variety of situations by compensating scarcity of its main larval food by exploiting alternative food sources. © 2015 Institute of Zoology, Chinese Academy of Sciences.

Climate and air pollution impacts on habitat suitability of Austrian forest ecosystems

PubMed Central

Djukic, Ika; Kitzler, Barbara; Kobler, Johannes; Mol-Dijkstra, Janet P.; Posch, Max; Reinds, Gert Jan; Schlutow, Angela; Starlinger, Franz; Wamelink, Wieger G. W.

2017-01-01

Climate change and excess deposition of airborne nitrogen (N) are among the main stressors to floristic biodiversity. One particular concern is the deterioration of valuable habitats such as those protected under the European Habitat Directive. In future, climate-driven shifts (and losses) in the species potential distribution, but also N driven nutrient enrichment may threaten these habitats. We applied a dynamic geochemical soil model (VSD+) together with a novel niche-based plant response model (PROPS) to 5 forest habitat types (18 forest sites) protected under the EU Directive in Austria. We assessed how future climate change and N deposition might affect habitat suitability, defined as the capacity of a site to host its typical plant species. Our evaluation indicates that climate change will be the main driver of a decrease in habitat suitability in the future in Austria. The expected climate change will increase the occurrence of thermophilic plant species while decreasing cold-tolerant species. In addition to these direct impacts, climate change scenarios caused an increase of the occurrence probability of oligotrophic species due to a higher N immobilisation in woody biomass leading to soil N depletion. As a consequence, climate change did offset eutrophication from N deposition, even when no further reduction in N emissions was assumed. Our results show that climate change may have positive side-effects in forest habitats when multiple drivers of change are considered. PMID:28898262

Local-scale habitat associations of grassland birds in southwestern Minnesota

USGS Publications Warehouse

Elliott, Lisa H.; Johnson, Douglas H.

2017-01-01

Conservation of obligate grassland species requires not only the protection of a sufficiently large area of habitat but also the availability of necessary vegetation characteristics for particular species. As a result land managers must understand which habitat characteristics are important for their target species. To identify the habitat associations of eight species of grassland birds, we conducted bird and vegetation surveys on 66 grassland habitat patches in southwestern Minnesota in 2013 and 2014. Species of interest included sedge wren (Cistothorus platensis), Savannah sparrow (Passerculus sandwichensis), grasshopper sparrow (Ammodramus savannarum), Henslow's sparrow (Ammodramus henslowii), dickcissel (Spiza americana), bobolink (Dolichonyx oryzivorus), and western meadowlark (Sturnella neglecta). We calculated correlation coefficients between vegetation variables and species density as measures of linear association. We assessed curvilinear relationships with loess plots. We found grassland birds on 95.5% of surveyed sites, indicating remnant prairie in southwestern Minnesota is used by grassland birds. In general individual species showed different patterns of association and most species were tolerant of a wide variety of habitat conditions. The most consistent pattern was a negative association with both the quantity and proximity of trees. Our findings that individual species have different habitat preferences suggest that prairie resource managers may need to coordinate management efforts in order to create a mosaic of habitat types to support multiple species, though tree control will be an important and ongoing management activity at the individual site level.

Climate and air pollution impacts on habitat suitability of Austrian forest ecosystems.

PubMed

Dirnböck, Thomas; Djukic, Ika; Kitzler, Barbara; Kobler, Johannes; Mol-Dijkstra, Janet P; Posch, Max; Reinds, Gert Jan; Schlutow, Angela; Starlinger, Franz; Wamelink, Wieger G W

2017-01-01

Climate change and excess deposition of airborne nitrogen (N) are among the main stressors to floristic biodiversity. One particular concern is the deterioration of valuable habitats such as those protected under the European Habitat Directive. In future, climate-driven shifts (and losses) in the species potential distribution, but also N driven nutrient enrichment may threaten these habitats. We applied a dynamic geochemical soil model (VSD+) together with a novel niche-based plant response model (PROPS) to 5 forest habitat types (18 forest sites) protected under the EU Directive in Austria. We assessed how future climate change and N deposition might affect habitat suitability, defined as the capacity of a site to host its typical plant species. Our evaluation indicates that climate change will be the main driver of a decrease in habitat suitability in the future in Austria. The expected climate change will increase the occurrence of thermophilic plant species while decreasing cold-tolerant species. In addition to these direct impacts, climate change scenarios caused an increase of the occurrence probability of oligotrophic species due to a higher N immobilisation in woody biomass leading to soil N depletion. As a consequence, climate change did offset eutrophication from N deposition, even when no further reduction in N emissions was assumed. Our results show that climate change may have positive side-effects in forest habitats when multiple drivers of change are considered.

Assessments of habitat preferences and quality depend on spatial scale and metrics of fitness

USGS Publications Warehouse

Chalfoun, A.D.; Martin, T.E.

2007-01-01

1. Identifying the habitat features that influence habitat selection and enhance fitness is critical for effective management. Ecological theory predicts that habitat choices should be adaptive, such that fitness is enhanced in preferred habitats. However, studies often report mismatches between habitat preferences and fitness consequences across a wide variety of taxa based on a single spatial scale and/or a single fitness component. 2. We examined whether habitat preferences of a declining shrub steppe songbird, the Brewer's sparrow Spizella breweri, were adaptive when multiple reproductive fitness components and spatial scales (landscape, territory and nest patch) were considered. 3. We found that birds settled earlier and in higher densities, together suggesting preference, in landscapes with greater shrub cover and height. Yet nest success was not higher in these landscapes; nest success was primarily determined by nest predation rates. Thus landscape preferences did not match nest predation risk. Instead, nestling mass and the number of nesting attempts per pair increased in preferred landscapes, raising the possibility that landscapes were chosen on the basis of food availability rather than safe nest sites. 4. At smaller spatial scales (territory and nest patch), birds preferred different habitat features (i.e. density of potential nest shrubs) that reduced nest predation risk and allowed greater season-long reproductive success. 5. Synthesis and applications. Habitat preferences reflect the integration of multiple environmental factors across multiple spatial scales, and individuals may have more than one option for optimizing fitness via habitat selection strategies. Assessments of habitat quality for management prescriptions should ideally include analysis of diverse fitness consequences across multiple ecologically relevant spatial scales. ?? 2007 The Authors.

High levels of effective long-distance dispersal may blur ecotypic divergence in a rare terrestrial orchid.

PubMed

Vanden Broeck, An; Van Landuyt, Wouter; Cox, Karen; De Bruyn, Luc; Gyselings, Ralf; Oostermeijer, Gerard; Valentin, Bertille; Bozic, Gregor; Dolinar, Branko; Illyés, Zoltán; Mergeay, Joachim

2014-07-07

Gene flow and adaptive divergence are key aspects of metapopulation dynamics and ecological speciation. Long-distance dispersal is hard to detect and few studies estimate dispersal in combination with adaptive divergence. The aim of this study was to investigate effective long-distance dispersal and adaptive divergence in the fen orchid (Liparis loeselii (L.) Rich.). We used amplified fragment length polymorphism (AFLP)-based assignment tests to quantify effective long-distance dispersal at two different regions in Northwest Europe. In addition, genomic divergence between fen orchid populations occupying two distinguishable habitats, wet dune slacks and alkaline fens, was investigated by a genome scan approach at different spatial scales (continental, landscape and regional) and based on 451 AFLP loci. We expected that different habitats would contribute to strong divergence and restricted gene flow resulting in isolation-by-adaptation. Instead, we found remarkably high levels of effective long-distance seed dispersal and low levels of adaptive divergence. At least 15% of the assigned individuals likely originated from among-population dispersal events with dispersal distances up to 220 km. Six (1.3%) 'outlier' loci, potentially reflecting local adaptation to habitat-type, were identified with high statistical support. Of these, only one (0.22%) was a replicated outlier in multiple independent dune-fen population comparisons and thus possibly reflecting truly parallel divergence. Signals of adaptation in response to habitat type were most evident at the scale of individual populations. The findings of this study suggest that the homogenizing effect of effective long-distance seed dispersal may overwhelm divergent selection associated to habitat type in fen orchids in Northwest Europe.

High levels of effective long-distance dispersal may blur ecotypic divergence in a rare terrestrial orchid

PubMed Central

2014-01-01

Background Gene flow and adaptive divergence are key aspects of metapopulation dynamics and ecological speciation. Long-distance dispersal is hard to detect and few studies estimate dispersal in combination with adaptive divergence. The aim of this study was to investigate effective long-distance dispersal and adaptive divergence in the fen orchid (Liparis loeselii (L.) Rich.). We used amplified fragment length polymorphism (AFLP)-based assignment tests to quantify effective long-distance dispersal at two different regions in Northwest Europe. In addition, genomic divergence between fen orchid populations occupying two distinguishable habitats, wet dune slacks and alkaline fens, was investigated by a genome scan approach at different spatial scales (continental, landscape and regional) and based on 451 AFLP loci. Results We expected that different habitats would contribute to strong divergence and restricted gene flow resulting in isolation-by-adaptation. Instead, we found remarkably high levels of effective long-distance seed dispersal and low levels of adaptive divergence. At least 15% of the assigned individuals likely originated from among-population dispersal events with dispersal distances up to 220 km. Six (1.3%) ‘outlier’ loci, potentially reflecting local adaptation to habitat-type, were identified with high statistical support. Of these, only one (0.22%) was a replicated outlier in multiple independent dune-fen population comparisons and thus possibly reflecting truly parallel divergence. Signals of adaptation in response to habitat type were most evident at the scale of individual populations. Conclusions The findings of this study suggest that the homogenizing effect of effective long-distance seed dispersal may overwhelm divergent selection associated to habitat type in fen orchids in Northwest Europe. PMID:24998243

Long-term changes in river-floodplain dynamics: implications for salmonid habitat in the Interior Columbia Basin, USA.

PubMed

Tomlinson, Matthew J; Gergel, Sarah E; Beechie, Timothy J; McClure, Michelle M

2011-07-01

Rivers and their associated floodplains are among the world's most highly altered ecosystems, resulting in billions of dollars in restoration expenditures. Successful restoration of these systems requires information at multiple spatial scales (from localized reaches to broader-scale watersheds), as well as information spanning long time frames. Here, we develop a suite of historical landscape indicators of riverine status, primarily from the perspective of salmonid management, using a case study in the Interior Columbia Basin, Washington, USA. We use a combination of historical and modern aerial photography to quantify changes in land cover and reach type, as well as potential fish habitat within channel and off-channel floodplain areas. As of 1949, 55% of the Wenatchee River floodplain had been converted to agriculture. By 2006, 62% had been modified by anthropogenic development, of which 20% was due to urban expansion. The historical percentage of agricultural land in the watershed and the contemporary percentage of urban area surpass thresholds in land cover associated with deleterious impacts on river systems. In addition, the abundance of reach types associated with the highest quality salmonid habitat (island braided and meandering reaches) has declined due to conversion to straight reach types. The area occupied by fish habitats associated with channel migration (slow/stagnant channels and dry channels) has declined approximately 25-30%. Along highly modified rivers, these habitats have also become increasingly fragmented. Caveats related to visual quality and seasonal timing of historical photographs were important considerations in the interpretation of changes witnessed for headwater island braided systems, as well as for floodplain ponds. Development of rigorous, long-term, multi-scale monitoring techniques is necessary to guide the management and restoration of river-floodplain systems for the diversity of ecosystem services they provide.

Habitat Suitability analysis of Koklass (Pucrasia macrolopha) Pheasant in Churdhar Wildlife Sanctuary of Himachal Pradesh, India using Geospatial Technology

NASA Astrophysics Data System (ADS)

Eliza, K.; Sarma, K.

2014-12-01

Pheasants are at the brink of destruction due to degradation of forests, environmental pollution, climatic changes and extensive hunting of wild floras and faunas.The problem is more acute in the developing countries where wildlife and biodiversity conservation are often less prioritized due to more pressing demands of food security and poverty alleviation. Koklass Pheasant (Pucrasia macrolopha) species is distributed from Afghanistan and Pakistan in the east along the Himalayas to southeastern Tibet, western China and southeastern Mongolia.This species is grouped under endangered species in Red Data Book of Zoological Survey of India and also classified as least concern species according to IUCN Red List of Threatened Species.Conservation biologists and managers need a range of both classical analyses and specific modern tools to face the increasing threats to biodiversity. Among these tools, habitat-suitability modeling has recently emerged as a relevant technique to assess global impacts to define wide conservation priorities.The present study is carried out using remote sensing satellite imagery and GIS modeling technique for assessing habitat suitability of Koklass Pheasants and finding out the habitat factors influencing the Koklass distribution in Churdhar Wildlife Sanctuary, India. Effective management and conservation of wildlife populations and their habitats largely depend on our ability to understand and predict species-habitat interactions. Different thematic maps viz., land use/cover, forest types, drainage buffer, multiple ring buffers of sighting locations and multiple ring buffers of roads have been prepared to support the objective of the study. The Weighted Overlay Analysis model is used for identifying different potential areas of habitat for this endangered species. The most suitable area for Koklass Pheasant within the Wildlife Sanctuary is found to be about 23.8 percent of the total area which is due to favourable habitat conditions for the survival of the species. The moderately high, moderate and least suitable areas come about 45.4, 24.9 and 5.9 percent, respectively. Identification of habitat potential areas for Koklass Pheasant species could be considered as one of the most important steps towards the conservation and management.

Pumping ions: rapid parallel evolution of ionic regulation following habitat invasions.

PubMed

Lee, Carol Eunmi; Kiergaard, Michael; Gelembiuk, Gregory William; Eads, Brian Donovan; Posavi, Marijan

2011-08-01

Marine to freshwater colonizations constitute among the most dramatic evolutionary transitions in the history of life. This study examined evolution of ionic regulation following saline-to-freshwater transitions in an invasive species. In recent years, the copepod Eurytemora affinis has invaded freshwater habitats multiple times independently. We found parallel evolutionary shifts in ion-motive enzyme activity (V-type H(+) ATPase, Na(+) /K(+) -ATPase) across independent invasions and in replicate laboratory selection experiments. Freshwater populations exhibited increased V-type H(+) ATPase activity in fresh water (0 PSU) and declines at higher salinity (15 PSU) relative to saline populations. This shift represented marked evolutionary increases in plasticity. In contrast, freshwater populations displayed reduced Na(+) /K(+) -ATPase activity across all salinities. Most notably, modifying salinity alone during laboratory selection experiments recapitulated the evolutionary shifts in V-type H(+) ATPase activity observed in nature. Maternal and embryonic acclimation could not account for the observed shifts in enzyme activity. V-type H(+) ATPase function has been hypothesized to be critical for freshwater and terrestrial adaptations, but evolution of this enzyme function had not been previously demonstrated in the context of habitat transitions. Moreover, the speed of these evolutionary shifts was remarkable, within a few generations in the laboratory and a few decades in the wild. © 2011 The Author(s). Evolution© 2011 The Society for the Study of Evolution.

The influence of housing characteristics on leisure-time sitting. A prospective cohort study in Danish adults.

PubMed

Saidj, Madina; Jørgensen, Torben; Jacobsen, Rikke Kart; Linneberg, Allan; Aadahl, Mette

2015-12-01

Built environmental attributes have been studied in relation to domestic time spent sedentary. An indoor behaviour has thus been linked to an outdoor setting. Yet, attributes of the actual domestic environment may also influence the time spent sedentary at home. Therefore, the aim was to examine if housing characteristics were cross-sectionally and prospectively related to leisure-time sitting in adults. In the Danish Health2006 cohort, 2308 adults were followed for 5 years. At baseline, subjects self-reported housing characteristics (habitat type, habitat surface area and household size), moderate-to-vigorous physical activity (MVPA) and socio-demographic factors. Leisure-time sitting was self-reported at baseline and 5-year follow-up. Multiple linear regression was used to assess cross-sectional and prospective associations. At baseline habitat surface area and household size were inversely associated with leisure-time sitting (p<0.01). Living in an apartment was associated with higher leisure-time sitting compared to living in a house (p<0.01). Household size was a predictor of 5-year leisure-time sitting (p<0.01), after adjustment for confounders and the other housing characteristics. Habitat type, habitat surface area and household size were associated with leisure-time sitting in adults, while especially household size was a predictor of leisure-time sitting five years later. The findings highlight the importance of home-environmental attributes when targeting a reduction in sedentary behaviours. Copyright © 2015 Elsevier Inc. All rights reserved.

Integrated Analysis of Flow, Form, and Function for River Management and Design Testing

NASA Astrophysics Data System (ADS)

Lane, B. A. A.; Pasternack, G. B.; Sandoval Solis, S.

2017-12-01

Rivers are highly complex, dynamic systems that support numerous ecosystem functions including transporting sediment, modulating biogeochemical processes, and regulating habitat availability for native species. The extent and timing of these functions is largely controlled by the interplay of hydrologic dynamics (i.e. flow) and the shape and composition of the river corridor (i.e. form). This study applies synthetic channel design to the evaluation of river flow-form-function linkages, with the aim of evaluating these interactions across a range of flows and forms to inform process-driven management efforts with limited data and financial requirements. In an application to California's Mediterranean-montane streams, the interacting roles of channel form, water year type, and hydrologic impairment were evaluated across a suite of ecosystem functions related to hydrogeomorphic processes, aquatic habitat, and riparian habitat. Channel form acted as the dominant control on hydrogeomorphic processes considered, while water year type controlled salmonid habitat functions. Streamflow alteration for hydropower increased redd dewatering risk and altered aquatic habitat availability and riparian recruitment dynamics. Study results highlight critical tradeoffs in ecosystem function performance and emphasize the significance of spatiotemporal diversity of flow and form at multiple scales for maintaining river ecosystem integrity. The approach is broadly applicable and extensible to other systems and ecosystem functions, where findings can be used to characterize complex controls on river ecosystems, assess impacts of proposed flow and form alterations, and inform river restoration strategies.

Analysis of the 1996 Wisconsin forest statistics by habitat type.

Treesearch

John Kotar; Joseph A. Kovach; Gary Brand

1999-01-01

The fifth inventory of Wisconsin's forests is presented from the perspective of habitat type as a classification tool. Habitat type classifies forests based on the species composition of the understory plant community. Various forest attributes are summarized by habitat type and management implications are discussed.

Estimating the per-capita contribution of habitats and pathways in a migratory network: A modelling approach

USGS Publications Warehouse

Wiederholt, Ruscena; Mattsson, Brady J.; Thogmartin, Wayne E.; Runge, Michael C.; Diffendorfer, Jay E.; Erickson, Richard A.; Federico, Paula; Lopez-Hoffman, Laura; Fryxell, John; Norris, D. Ryan; Sample, Christine

2018-01-01

Every year, migratory species undertake seasonal movements along different pathways between discrete regions and habitats. The ability to assess the relative demographic contributions of these different habitats and pathways to the species’ overall population dynamics is critical for understanding the ecology of migratory species, and also has practical applications for management and conservation. Metrics for assessing habitat contributions have been well-developed for metapopulations, but an equivalent metric is not currently available for migratory populations. Here, we develop a framework for estimating the demographic contributions of the discrete habitats and pathways used by migratory species throughout the annual cycle by estimating the per capita contribution of cohorts using these locations. Our framework accounts for seasonal movements between multiple breeding and non-breeding habitats and for both resident and migratory cohorts. We illustrate our framework using a hypothetical migratory network of four habitats, which allows us to better understand how variations in habitat quality affect per capita contributions. Results indicate that per capita contributions for any habitat or pathway are dependent on habitat-specific survival probabilities in all other areas used as part of the migratory circuit, and that contribution metrics are spatially linked (e.g. reduced survival in one habitat also decreases the contribution metric for other habitats). Our framework expands existing theory on the dynamics of spatiotemporally structured populations by developing a generalized approach to estimate the habitat- and pathway-specific contributions of species migrating between multiple breeding and multiple non-breeding habitats for a range of life histories or migratory strategies. Most importantly, it provides a means of prioritizing conservation efforts towards those migratory pathways and habitats that are most critical for the population viability of migratory species.

Responses of stream microbes to multiple anthropogenic stressors in a mesocosm study.

PubMed

Nuy, Julia K; Lange, Anja; Beermann, Arne J; Jensen, Manfred; Elbrecht, Vasco; Röhl, Oliver; Peršoh, Derek; Begerow, Dominik; Leese, Florian; Boenigk, Jens

2018-08-15

Stream ecosystems are affected by multiple anthropogenic stressors worldwide. Even though effects of many single stressors are comparatively well studied, the effects of multiple stressors are difficult to predict. In particular bacteria and protists, which are responsible for the majority of ecosystem respiration and element flows, are infrequently studied with respect to multiple stressors responses. We conducted a stream mesocosm experiment to characterize the responses of single and multiple stressors on microbiota. Two functionally important stream habitats, leaf litter and benthic phototrophic rock biofilms, were exposed to three stressors in a full factorial design: fine sediment deposition, increased chloride concentration (salinization) and reduced flow velocity. We analyzed the microbial composition in the two habitat types of the mesocosms using an amplicon sequencing approach. Community analysis on different taxonomic levels as well as principle component analyses (PCoAs) based on realtive abundances of operational taxonomic units (OTUs) showed treatment specific shifts in the eukaryotic biofilm community. Analysis of variance (ANOVA) revealed that Bacillariophyta responded positively salinity and sediment increase, while the relative read abundance of chlorophyte taxa decreased. The combined effects of multiple stressors were mainly antagonistic. Therefore, the community composition in multiply stressed environments resembled the composition of the unstressed control community in terms of OTU occurrence and relative abundances. Copyright © 2018 The Authors. Published by Elsevier B.V. All rights reserved.

Associations of Dragonflies (Odonata) to Habitat Variables within the Maltese Islands: A Spatio-Temporal Approach

PubMed Central

Balzan, Mario V.

2012-01-01

Relatively little information is available on environmental associations and the conservation of Odonata in the Maltese Islands. Aquatic habitats are normally spatio-temporally restricted, often located within predominantly rural landscapes, and are thereby susceptible to farmland water management practices, which may create additional pressure on water resources. This study investigates how odonate assemblage structure and diversity are associated with habitat variables of local breeding habitats and the surrounding agricultural landscapes. Standardized survey methodology for adult Odonata involved periodical counts over selected water-bodies (valley systems, semi-natural ponds, constructed agricultural reservoirs). Habitat variables relating to the type of water body, the floristic and physiognomic characteristics of vegetation, and the composition of the surrounding landscape, were studied and analyzed through a multivariate approach. Overall, odonate diversity was associated with a range of factors across multiple spatial scales, and was found to vary with time. Lentic water-bodies are probably of high conservation value, given that larval stages were mainly associated with this habitat category, and that all species were recorded in the adult stage in this habitat type. Comparatively, lentic and lotic seminatural waterbodies were more diverse than agricultural reservoirs and brackish habitats. Overall, different odonate groups were associated with different vegetation life-forms and height categories. The presence of the great reed, Arundo donax L., an invasive alien species that forms dense stands along several water-bodies within the Islands, seems to influence the abundance and/or occurrence of a number of species. At the landscape scale, roads and other ecologically disturbed ground, surface water-bodies, and landscape diversity were associated with particular components of the odonate assemblages. Findings from this study have several implications for the use of Odonata as biological indicators, and for current trends with respect to odonate diversity conservation within the Maltese Islands. PMID:23427906

Associations of dragonflies (Odonata) to habitat variables within the Maltese Islands: a spatio-temporal approach.

PubMed

Balzan, Mario V

2012-01-01

Relatively little information is available on environmental associations and the conservation of Odonata in the Maltese Islands. Aquatic habitats are normally spatio-temporally restricted, often located within predominantly rural landscapes, and are thereby susceptible to farmland water management practices, which may create additional pressure on water resources. This study investigates how odonate assemblage structure and diversity are associated with habitat variables of local breeding habitats and the surrounding agricultural landscapes. Standardized survey methodology for adult Odonata involved periodical counts over selected water-bodies (valley systems, semi-natural ponds, constructed agricultural reservoirs). Habitat variables relating to the type of water body, the floristic and physiognomic characteristics of vegetation, and the composition of the surrounding landscape, were studied and analyzed through a multivariate approach. Overall, odonate diversity was associated with a range of factors across multiple spatial scales, and was found to vary with time. Lentic water-bodies are probably of high conservation value, given that larval stages were mainly associated with this habitat category, and that all species were recorded in the adult stage in this habitat type. Comparatively, lentic and lotic seminatural waterbodies were more diverse than agricultural reservoirs and brackish habitats. Overall, different odonate groups were associated with different vegetation life-forms and height categories. The presence of the great reed, Arundo donax L., an invasive alien species that forms dense stands along several water-bodies within the Islands, seems to influence the abundance and/or occurrence of a number of species. At the landscape scale, roads and other ecologically disturbed ground, surface water-bodies, and landscape diversity were associated with particular components of the odonate assemblages. Findings from this study have several implications for the use of Odonata as biological indicators, and for current trends with respect to odonate diversity conservation within the Maltese Islands.

Use of aerial photograph, channel-type interpretations to predict habitat availability in small streams. Restoration project 95505b. Exxon Valdez oil spill restoration project final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Olson, R.A.

1995-05-01

In-stream habitats were quantified and qualified for nine stream channel-types. The channel types were identified using interpretations from stereo pairs of color and infrared aerial photographs. A total of 70 sites were sampled for streams located on the northwest portion of the Kenai Peninsula, in south-central Alaska. Channel-types were a significant predictor (P < 0.05) of the area (sq m) for 9 of 13 habitat types. Channel-types that had similar habitat composition, differed in size and depth of those habitats. Spawning habitat also appeared to be correlated to channel-type, however the within channel-type variability caused the differences to test non-significantmore » P < 0.05.« less

Using Knowledge of Chemical and Structural Defenses of Seaweeds to Develop a Standardized Measure of Herbivory in Tropical and Subtropical Habitats

NASA Astrophysics Data System (ADS)

Paul, V. J.

2016-02-01

Herbivory is an important process determining the structure and function of marine ecosystems, and this is especially true on coral reefs and in associated tropical and subtropical habitats where grazing by fishes can be intense. As reef degradation is occurring on a global scale, and overfishing can contribute to this problem, rates of herbivory can be an important indicator of reef function and resilience. Our goal was to develop a standardized herbivory assay that can be deployed globally to measure the impact of herbivorous fishes across multiple habitat types. Many tropical and subtropical seaweeds contain chemical and structural defenses that can protect them from herbivores, and this information was key to selecting a range of marine plants that are differentially palatable to herbivorous fishes for these assays. We present method development and experimental results from extensive deployment of these herbivory assays at Carrie Bow Cay, Belize.

Ecosystem services: Urban parks under a magnifying glass.

PubMed

Mexia, Teresa; Vieira, Joana; Príncipe, Adriana; Anjos, Andreia; Silva, Patrícia; Lopes, Nuno; Freitas, Catarina; Santos-Reis, Margarida; Correia, Otília; Branquinho, Cristina; Pinho, Pedro

2018-01-01

Urban areas' population has grown during the last century and it is expected that over 60% of the world population will live in cities by 2050. Urban parks provide several ecosystem services that are valuable to the well-being of city-dwellers and they are also considered a nature-based solution to tackle multiple environmental problems in cities. However, the type and amount of ecosystem services provided will vary with each park vegetation type, even within same the park. Our main goal was to quantify the trade-offs in ecosystem services associated to different vegetation types, using a spatially detailed approach. Rather than relying solely on general vegetation typologies, we took a more ecologically oriented approach, by explicitly considering different units of vegetation structure and composition. This was demonstrated in a large park (44ha) located in the city of Almada (Lisbon metropolitan area, Portugal), where six vegetation units were mapped in detail and six ecosystem services were evaluated: carbon sequestration, seed dispersal, erosion prevention, water purification, air purification and habitat quality. The results showed that, when looking at the park in detail, some ecosystem services varied greatly with vegetation type. Carbon sequestration was positively influenced by tree density, independently of species composition. Seed dispersal potential was higher in lawns, and mixed forest provided the highest amount of habitat quality. Air purification service was slightly higher in mixed forest, but was high in all vegetation types, probably due to low background pollution, and both water purification and erosion prevention were high in all vegetation types. Knowing the type, location, and amount of ecosystem services provided by each vegetation type can help to improve management options based on ecosystem services trade-offs and looking for win-win situations. The trade-offs are, for example, very clear for carbon: tree planting will boost carbon sequestration regardless of species, but may not be enough to increase habitat quality. Moreover, it may also negatively influence seed dispersal service. Informed practitioners can use this ecological knowledge to promote the role of urban parks as a nature-based solution to provide multiple ecosystem services, and ultimately improve the design and management of the green infrastructure. This will also improve the science of Ecosystem Services, acknowledging that the type of vegetation matters for the provision of ecosystem services and trade-offs analysis. Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

Northern red oak volume growth on four northern Wisconsin habitat types

Treesearch

Michael Demchik; Kevin M. Schwartz; Rory Braun; Eric Scharenbrock

2014-01-01

Northern red oak (Quercus rubra) grows across much of Wisconsin. Using site factors to aid in prediction of volume and basal area increment facilitates management of red oak and other species of interest. Currently, habitat type (Wisconsin Habitat Type Classification System) is often determined when stands are inventoried. If habitat type were...

Forest habitat types of central Idaho

Treesearch

Robert Steele; Robert D. Pfister; Russell A. Ryker; Jay A. Kittams

1981-01-01

A land-classification system based upon potential natural vegetation is presented for the forests of central Idaho. It is based on reconnaissance sampling of about 800 stands. A hierarchical taxonomic classification of forest sites was developed using the habitat type concept. A total of eight climax series, 64 habitat types, and 55 additional phases of habitat types...

Intra-population variation in activity ranges, diel patterns, movement rates, and habitat use of American alligators in a subtropical estuary

NASA Astrophysics Data System (ADS)

Rosenblatt, Adam E.; Heithaus, Michael R.; Mazzotti, Frank J.; Cherkiss, Michael; Jeffery, Brian M.

2013-12-01

Movement and habitat use patterns are fundamental components of the behaviors of mobile animals and help determine the scale and types of interactions they have with their environments. These behaviors are especially important to quantify for top predators because they can have strong effects on lower trophic levels as well as the wider ecosystem. Many studies of top predator movement and habitat use focus on general population level trends, which may overlook important intra-population variation in behaviors that now appear to be common. In an effort to better understand the prevalence of intra-population variation in top predator movement behaviors and the potential effects of such variation on ecosystem dynamics, we examined the movement and habitat use patterns of a population of adult American alligators (Alligator mississippiensis) in a subtropical estuary for nearly four years. We found that alligators exhibited divergent behaviors with respect to activity ranges, movement rates, and habitat use, and that individualized behaviors were stable over multiple years. We also found that the variations across the three behavioral metrics were correlated such that consistent behavioral types emerged, specifically more exploratory individuals and more sedentary individuals. Our study demonstrates that top predator populations can be characterized by high degrees of intra-population variation in terms of movement and habitat use behaviors that could lead to individuals filling different ecological roles in the same ecosystem. By extension, one-size-fits-all ecosystem and species-specific conservation and management strategies that do not account for potential intra-population variation in top predator behaviors may not produce the desired outcomes in all cases.

Intra-population variation in activity ranges, diel patterns, movement rates, and habitat use of American alligators in a subtropical estuary

USGS Publications Warehouse

Rosenblatt, Adam E.; Heithaus, Michael R.; Mazzotti, Frank M; Cherkiss, Michael S.; Jeffery, Brian M.

2013-01-01

Movement and habitat use patterns are fundamental components of the behaviors of mobile animals and help determine the scale and types of interactions they have with their environments. These behaviors are especially important to quantify for top predators because they can have strong effects on lower trophic levels as well as the wider ecosystem. Many studies of top predator movement and habitat use focus on general population level trends, which may overlook important intra-population variation in behaviors that now appear to be common. In an effort to better understand the prevalence of intrapopulation variation in top predator movement behaviors and the potential effects of such variation on ecosystem dynamics, we examined the movement and habitat use patterns of a population of adult American alligators (Alligator mississippiensis) in a subtropical estuary for nearly four years. We found that alligators exhibited divergent behaviors with respect to activity ranges, movement rates, and habitat use, and that individualized behaviors were stable over multiple years. We also found that the variations across the three behavioral metrics were correlated such that consistent behavioral types emerged, specifically more exploratory individuals and more sedentary individuals. Our study demonstrates that top predator populations can be characterized by high degrees of intra-population variation in terms of movement and habitat use behaviors that could lead to individuals filling different ecological roles in the same ecosystem. By extension, one-size-fits-all ecosystem and species-specific conservation and management strategies that do not account for potential intra-population variation in top predator behaviors may not produce the desired outcomes in all cases.

Herpetofaunal Community Change in Multiple Habitats after Fifteen Years in a Southwest Florida Preserve, USA

PubMed Central

Cassani, John R.; Croshaw, Dean A.; Bozzo, Joseph; Brooks, Brenda; Everham, Edwin M.; Ceilley, David W.; Hanson, Deborah

2015-01-01

Herpetofaunal declines have been documented globally, and southern Florida, USA, is an especially vulnerable region because of high impacts from hydrological perturbations and nonindigenous species. To assess the extent of recent change in herpetofauna community composition, we established a baseline inventory during 1995-97 at a managed preserve in a habitat rich area of southwest Florida, and repeated our sampling methods fifteen years later (2010-11). Nine drift fence arrays were placed in four habitat types: mesic flatwood, mesic hammock, depression marsh, and wet prairie. Trapping occurred daily for one week during 7-8 sampling runs in each period (57 and 49 total sampling days, respectively). Species richness was maintained in mesic hammock habitats but varied in the others. Catch rates of several native species (Anaxyrus terrestris, Lithobates grylio, Anolis carolinensis, Nerodia fasciata) declined significantly. Other native species (Lithobates sphenocephalus, Siren lacertian, and Notophthalmus viridescens piaropicola) that were abundant in 1995-97 declined by greater than 50%. Catch rate of only two species (the nonindigenous Anolis sagrei and the native Diadophis punctatus) increased significantly. Hierarchical cluster analysis indicated similarity within habitat types but significant dissimilarity between sampling periods, confirming shifts in community composition. Analysis of individual species’ contributions to overall similarity across habitats shows a shift from dominance of native species in the 1990s to increased importance of nonindigenous species in 2010-11. Although natural population fluctuations may have influenced differences between the two sampling periods, our results suggest considerable recent change in the structure and composition of this southwest Florida herpetofaunal community. The causes are unknown, but hydrological shifts and ecological impacts of nonindigenous species may have contributed. PMID:26016475

Distribution and community structure of ichthyoplankton in Laguna Madre seagrass meadows: Potential impact of seagrass species change

USGS Publications Warehouse

Tolan, J.M.; Holt, S.A.; Onuf, C.P.

1997-01-01

Seasonal ichthyoplankton surveys were made in the lower Laguna Madre, Texas, to compare the relative utilization of various nursery habitats (shoal grass, Halodule wrightii; manatee grass, Syringodium filiforme;, and unvegetated sand bottom) for both estuarine and offshore-spawned larvae. The species composition and abundance of fish larvae were determined for each habitat type at six locations in the bay. Pushnet ichthyoplankton sampling resulted in 296 total collections, yielding 107,463 fishes representing 55 species in 24 families. A broad spectrum of both the biotic and physical habitat parameters were examined to link the dispersion and distribution of both pre-settlement and post-settlement larvae to the utilization of shallow seagrass habitats. Sample sites were grouped by cluster analysis (Ward's minimum variance method) according to the similarity of their fish assemblages and subsequently examined with a multiple discriminant function analysis to identify important environmental variables. Abiotic environmental factors were most influential in defining groups for samples dominated by early larvae, whereas measures of seagrass complexity defined groups dominated by older larvae and juveniles. Juvenile-stage individuals showed clear habitat preference, with the more shallow Halodule wrightii being the habitat of choice, whereas early larvae of most species were widely distributed over all habitats. As a result of the recent shift of dominance from Halodule wrightii to Syringodium filiforme, overall reductions in the quality of nursery habitat for fishes in the lower Laguna Madre are projected.

Forest habitat types of eastern Idaho-western Wyoming

Treesearch

Robert Steele; Stephen V. Cooper; David M. Ondov; David W. Roberts; Robert D. Pfister

1983-01-01

A land-classification system based upon potential natural vegetation is presented for the forests of central Idaho. It is based on reconnaissance sampling of about 980 stands. A hierarchical taxonomic classification of forest sites was developed using the habitat type concept. A total of six climax series, 58 habitat types, and 24 additional phases of habitat types are...

The biology of habitat dominance; can microbes behave as weeds?

PubMed Central

Cray, Jonathan A; Bell, Andrew N W; Bhaganna, Prashanth; Mswaka, Allen Y; Timson, David J; Hallsworth, John E

2013-01-01

Summary Competition between microbial species is a product of, yet can lead to a reduction in, the microbial diversity of specific habitats. Microbial habitats can resemble ecological battlefields where microbial cells struggle to dominate and/or annihilate each other and we explore the hypothesis that (like plant weeds) some microbes are genetically hard-wired to behave in a vigorous and ecologically aggressive manner. These ‘microbial weeds’ are able to dominate the communities that develop in fertile but uncolonized – or at least partially vacant – habitats via traits enabling them to out-grow competitors; robust tolerances to habitat-relevant stress parameters and highly efficient energy-generation systems; avoidance of or resistance to viral infection, predation and grazers; potent antimicrobial systems; and exceptional abilities to sequester and store resources. In addition, those associated with nutritionally complex habitats are extraordinarily versatile in their utilization of diverse substrates. Weed species typically deploy multiple types of antimicrobial including toxins; volatile organic compounds that act as either hydrophobic or highly chaotropic stressors; biosurfactants; organic acids; and moderately chaotropic solutes that are produced in bulk quantities (e.g. acetone, ethanol). Whereas ability to dominate communities is habitat-specific we suggest that some microbial species are archetypal weeds including generalists such as: Pichia anomala, Acinetobacter spp. and Pseudomonas putida; specialists such as Dunaliella salina, Saccharomyces cerevisiae, Lactobacillus spp. and other lactic acid bacteria; freshwater autotrophs Gonyostomum semen and Microcystis aeruginosa; obligate anaerobes such as Clostridium acetobutylicum; facultative pathogens such as Rhodotorula mucilaginosa, Pantoea ananatis and Pseudomonas aeruginosa; and other extremotolerant and extremophilic microbes such as Aspergillus spp., Salinibacter ruber and Haloquadratum walsbyi. Some microbes, such as Escherichia coli, Mycobacterium smegmatis and Pseudoxylaria spp., exhibit characteristics of both weed and non-weed species. We propose that the concept of nonweeds represents a ‘dustbin’ group that includes species such as Synodropsis spp., Polypaecilum pisce, Metschnikowia orientalis, Salmonella spp., and Caulobacter crescentus. We show that microbial weeds are conceptually distinct from plant weeds, microbial copiotrophs, r-strategists, and other ecophysiological groups of microorganism. Microbial weed species are unlikely to emerge from stationary-phase or other types of closed communities; it is open habitats that select for weed phenotypes. Specific characteristics that are common to diverse types of open habitat are identified, and implications of weed biology and open-habitat ecology are discussed in the context of further studies needed in the fields of environmental and applied microbiology. PMID:23336673

A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment

PubMed Central

2012-01-01

Background The marine environment is comprised of numerous divergent organisms living under similar selective pressures, often resulting in the evolution of convergent structures such as the fusiform body shape of pelagic squids, fishes, and some marine mammals. However, little is known about the frequency of, and circumstances leading to, convergent evolution in the open ocean. Here, we present a comparative study of the molluscan class Cephalopoda, a marine group known to occupy habitats from the intertidal to the deep sea. Several lineages bear features that may coincide with a benthic or pelagic existence, making this a valuable group for testing hypotheses of correlated evolution. To test for convergence and correlation, we generate the most taxonomically comprehensive multi-gene phylogeny of cephalopods to date. We then create a character matrix of habitat type and morphological characters, which we use to infer ancestral character states and test for correlation between habitat and morphology. Results Our study utilizes a taxonomically well-sampled phylogeny to show convergent evolution in all six morphological characters we analyzed. Three of these characters also correlate with habitat. The presence of an autogenic photophore (those relying upon autonomous enzymatic light reactions) is correlated with a pelagic habitat, while the cornea and accessory nidamental gland correlate with a benthic lifestyle. Here, we present the first statistical tests for correlation between convergent traits and habitat in cephalopods to better understand the evolutionary history of characters that are adaptive in benthic or pelagic environments, respectively. Discussion Our study supports the hypothesis that habitat has influenced convergent evolution in the marine environment: benthic organisms tend to exhibit similar characteristics that confer protection from invasion by other benthic taxa, while pelagic organisms possess features that facilitate crypsis and communication in an environment lacking physical refuges. Features that have originated multiple times in distantly related lineages are likely adaptive for the organisms inhabiting a particular environment: studying the frequency and evolutionary history of such convergent characters can increase understanding of the underlying forces driving ecological and evolutionary transitions in the marine environment. PMID:22839506

Seafloor habitat mapping and classification in Glacier Bay, Alaska: Phase 1 & 2 1996-2004

USGS Publications Warehouse

Hooge, Philip N.; Carlson, Paul R.; Mondragon, Jennifer; Etherington, Lisa L.; Cochran, G.R.

2004-01-01

Glacier Bay is a diverse fjord ecosystem with multiple sills, numerous tidewater glaciers and a highly complex oceanographic system. The Bay was completely glaciated prior to the 1700’s and subsequently experienced the fastest glacial retreat recorded in historical times. Currently, some of the highest sedimentation rates ever observed occur in the Bay, along with rapid uplift (up to 2.5 cm/year) due to a combination of plate tectonics and isostatic rebound. Glacier Bay is the second deepest fjord in Alaska, with depths over 500 meters. This variety of physical processes and bathymetry creates many diverse habitats within a relatively small area (1,255 km2 ). Habitat can be defined as the locality, including resources and environmental conditions, occupied by a species or population of organisms (Morrison et al 1992). Mapping and characterization of benthic habitat is crucial to an understanding of marine species and can serve a variety of purposes including: understanding species distributions and improving stock assessments, designing special management areas and marine protected areas, monitoring and protecting important habitats, and assessing habitat change due to natural or human impacts. In 1996, Congress recognized the importance of understanding benthic habitat for fisheries management by reauthorizing the Magnuson-Stevens Fishery Conservation and Management Act and amending it with the Sustainable Fisheries Act (SFA). This amendment emphasizes the importance of habitat protection to healthy fisheries and requires identification of essential fish habitat in management decisions. Recently, the National Park Service’s Ocean Stewardship Strategy identified the creation of benthic habitat maps and sediment maps as crucial components to complete basic ocean park resource inventories (Davis 2003). Glacier Bay National Park managers currently have very limited knowledge about the bathymetry, sediment types, and various marine habitats of ecological importance in the Park. Ocean floor bathymetry and sediment type are the building blocks of marine communities. Bottom type and shape affects the kinds of benthic communities that develop in a particular environment as well as the oceanographic conditions that communities are subject to. Accurate mapping of the ocean floor is essential for park manager’s understanding of existing marine communities and will be important in assessing human induced changes (e.g., vessel traffic and commercial fishing), biological change (e.g., rapid sea otter recolonization), and geological processes of change (e.g., deglaciation). Information on animal-habitat relationships, particularly within a marine reserve framework, will be valuable to agencies making decisions about critical habitats, marine reserve design, as well as fishery management. Identification and mapping of benthic habitat provides National Park Service mangers with tools to increase the effectiveness of resource management. The primary objective of this project is to investigate the geological characteristics of the biological habitats of halibut, Dungeness crab, king crab, and Tanner crab within Glacier Bay National Park. Additionally, habitat classification of shallow water regions of Glacier Bay will provide crucial information on the relationship between benthic habitat features and the abundance of benthic prey items for a variety of marine predators, including sea ducks, the rapidly increasing population of sea otters, and other marine mammals. 

Monitoring vegetation response to episodic disturbance events by using multitemporal vegetation indices

USGS Publications Warehouse

Steyer, Gregory D.; Couvillion, Brady R.; Barras, John A.

2013-01-01

Normalized Difference Vegetation Index (NDVI) derived from MODerate-resolution Imaging Spectroradiometer (MODIS) satellite imagery and land/water assessments from Landsat Thematic Mapper (TM) imagery were used to quantify the extent and severity of damage and subsequent recovery after Hurricanes Katrina and Rita of 2005 within the vegetation communities of Louisiana's coastal wetlands. Field data on species composition and total live cover were collected from 232 unique plots during multiple time periods to corroborate changes in NDVI values over time. Aprehurricane 5-year baseline time series clearly identified NDVI values by habitat type, suggesting the sensitivity of NDVI to assess and monitor phenological changes in coastal wetland habitats. Monthly data from March 2005 to November 2006 were compared to the baseline average to create a departure from average statistic. Departures suggest that over 33% (4,714 km2) of the prestorm, coastal wetlands experienced a substantial decline in the density and vigor of vegetation by October 2005 (poststorm), mostly in the east and west regions, where landfalls of Hurricanes Katrina and Rita occurred. The percentage of area of persistent vegetation damage due to long-lasting formation of new open water was 91.8% in the east and 81.0% and 29.0% in the central and west regions, respectively. Although below average NDVI values were observed in most marsh communities through November 2006, recovery of vegetation was evident. Results indicated that impacts and recovery from large episodic disturbance events that influence multiple habitat types can be accurately determined using NDVI, especially when integrated with assessments of physical landscape changes and field verifications.

Monitoring vegetation response to episodic disturbance events by using multi-temporal vegetation indices

USGS Publications Warehouse

Steyer, Gregory D.; Couvillion, Brady R.; Barras, John A.

2013-01-01

Normalized Difference Vegetation Index (NDVI) derived from MODerate-resolution Imaging Spectroradiometer (MODIS) satellite imagery and land/water assessments from Landsat Thematic Mapper (TM) imagery were used to quantify the extent and severity of damage and subsequent recovery after Hurricanes Katrina and Rita of 2005 within the vegetation communities of Louisiana's coastal wetlands. Field data on species composition and total live cover were collected from 232 unique plots during multiple time periods to corroborate changes in NDVI values over time. Aprehurricane 5-year baseline time series clearly identified NDVI values by habitat type, suggesting the sensitivity of NDVI to assess and monitor phenological changes in coastal wetland habitats. Monthly data from March 2005 to November 2006 were compared to the baseline average to create a departure from average statistic. Departures suggest that over 33% (4,714 km2) of the prestorm, coastal wetlands experienced a substantial decline in the density and vigor of vegetation by October 2005 (poststorm), mostly in the east and west regions, where landfalls of Hurricanes Katrina and Rita occurred. The percentage of area of persistent vegetation damage due to long-lasting formation of new open water was 91.8% in the east and 81.0% and 29.0% in the central and west regions, respectively. Although below average NDVI values were observed in most marsh communities through November 2006, recovery of vegetation was evident. Results indicated that impacts and recovery from large episodic disturbance events that influence multiple habitat types can be accurately determined using NDVI, especially when integrated with assessments of physical landscape changes and field verifications.

Determinants of Habitat Selection by Hatchling Australian Freshwater Crocodiles

PubMed Central

Somaweera, Ruchira; Webb, Jonathan K.; Shine, Richard

2011-01-01

Animals almost always use habitats non-randomly, but the costs and benefits of using specific habitat types remain unknown for many types of organisms. In a large lake in northwestern Australia (Lake Argyle), most hatchling (<12-month-old) freshwater crocodiles (Crocodylus johnstoni) are found in floating vegetation mats or grassy banks rather than the more widely available open banks. Mean body sizes of young crocodiles did not differ among the three habitat types. We tested four potential explanations for non-random habitat selection: proximity to nesting sites, thermal conditions, food availability, and exposure to predation. The three alternative habitat types did not differ in proximity to nesting sites, or in thermal conditions. Habitats with higher food availability harboured more hatchlings, and feeding rates (obtained by stomach-flushing of recently-captured crocodiles) were highest in such areas. Predation risk may also differ among habitats: we were twice as likely to capture a crocodile after seeing it in open-bank sites than in the other two habitat types. Thus, habitat selection of hatchling crocodiles in this system may be driven both by prey availability and by predation risk. PMID:22163308

Use of Multiple Regression and Use-Availability Analyses in Determining Habitat Selection by Gray Squirrels (Sciurus Carolinensis)

Treesearch

John W. Edwards; Susan C. Loeb; David C. Guynn

1994-01-01

Multiple regression and use-availability analyses are two methods for examining habitat selection. Use-availability analysis is commonly used to evaluate macrohabitat selection whereas multiple regression analysis can be used to determine microhabitat selection. We compared these techniques using behavioral observations (n = 5534) and telemetry locations (n = 2089) of...

Assessing vulnerability to invasion by nonnative plant species at multiple spatial scales

USGS Publications Warehouse

Stohlgren, T.J.; Chong, G.W.; Schell, L.D.; Rimar, K.A.; Otsuki, Yuka; Lee, M.; Kalkhan, M.A.; Villa, C.A.

2002-01-01

Basic information on where nonnative plant species have successfully invaded is lacking. We assessed the vulnerability of 22 vegetation types (25 sets of four plots in nine study areas) to nonnative plant invasions in the north–central United States. In general, habitats with high native species richness were more heavily invaded than species-poor habitats, low-elevation areas were more invaded than high-elevation areas, and riparian zones were more invaded than nearby upland sites. For the 100 1000-m2 plots (across all vegetation types), 50% of the variation in nonnative species richness was explained by longitude, latitude, native plant species richness, soil total percentage nitrogen, and mean maximum July temperature (n = 100 plots; P < 0.001). At the vegetation-type scale (n = 25 sets of four 1000-m2 plots/type), 64% of the variation in nonnative species richness was explained by native plant species richness, elevation, and October to June precipitation (P < 0.001). The foliar cover of nonnative species (log) was strongly positively correlated with the nonnative species richness at the plot scale (r = 0.77, P < 0.001) and vegetation-type scale (r = 0.83, P < 0.001). We concluded that, at the vegetation-type and regional scales in the north–central United States, (1) vegetation types rich in native species are often highly vulnerable to invasion by nonnative plant species; (2) where several nonnative species become established, nonnative species cover can substantially increase; (3) the attributes that maintain high native plant species richness (high light, water, nitrogen, and temperatures) also help maintain nonnative plant species richness; and (4) more care must be taken to preserve native species diversity in highly vulnerable habitats.

Assessing habitat connectivity for ground-dwelling animals in an urban environment.

PubMed

Braaker, S; Moretti, M; Boesch, R; Ghazoul, J; Obrist, M K; Bontadina, F

To ensure viable species populations in fragmented landscapes, individuals must be able to move between suitable habitat patches. Despite the increased interest in biodiversity assessment in urban environments, the ecological relevance of habitat connectivity in highly fragmented landscapes remains largely unknown. The first step to understanding the role of habitat connectivity in urban ecology is the challenging task of assessing connectivity in the complex patchwork of contrasting habitats that is found in cities. We developed a data-based framework, minimizing the use of subjective assumptions, to assess habitat connectivity that consists of the following sequential steps: (1) identification of habitat preference based on empirical habitat-use data; (2) derivation of habitat resistance surfaces evaluating various transformation functions; (3) modeling of different connectivity maps with electrical circuit theory (Circuitscape), a method considering all possible pathways across the landscape simultaneously; and (4) identification of the best connectivity map with information-theoretic model selection. We applied this analytical framework to assess habitat connectivity for the European hedgehog Erinaceus europaeus, a model species for ground-dwelling animals, in the city of Zurich, Switzerland, using GPS track points from 40 individuals. The best model revealed spatially explicit connectivity “pinch points,” as well as multiple habitat connections. Cross-validation indicated the general validity of the selected connectivity model. The results show that both habitat connectivity and habitat quality affect the movement of urban hedgehogs (relative importance of the two variables was 19.2% and 80.8%, respectively), and are thus both relevant for predicting urban animal movements. Our study demonstrates that even in the complex habitat patchwork of cities, habitat connectivity plays a major role for ground-dwelling animal movement. Data-based habitat connectivity maps can thus serve as an important tool for city planners to identify habitat corridors and plan appropriate management and conservation measures for urban animals. The analytical framework we describe to model such connectivity maps is generally applicable to different types of habitat-use data and can be adapted to the movement scale of the focal species. It also allows evaluation of the impact of future landscape changes or management scenarios on habitat connectivity in urban landscapes.

Scale dependency of American marten (Martes americana) habitat relations [Chapter 12

Treesearch

Andrew J. Shirk; Tzeidle N. Wasserman; Samuel A. Cushman; Martin G. Raphael

2012-01-01

Animals select habitat resources at multiple spatial scales; therefore, explicit attention to scale-dependency when modeling habitat relations is critical to understanding how organisms select habitat in complex landscapes. Models that evaluate habitat variables calculated at a single spatial scale (e.g., patch, home range) fail to account for the effects of...

Song convergence in multiple urban populations of silvereyes (Zosterops lateralis)

PubMed Central

Potvin, Dominique A; Parris, Kirsten M

2012-01-01

Recent studies have revealed differences between urban and rural vocalizations of numerous bird species. These differences include frequency shifts, amplitude shifts, altered song speed, and selective meme use. If particular memes sung by urban populations are adapted to the urban soundscape, “urban-typical” calls, memes, or repertoires should be consistently used in multiple urban populations of the same species, regardless of geographic location. We tested whether songs or contact calls of silvereyes (Zosterops lateralis) might be subject to such convergent cultural evolution by comparing syllable repertoires of geographically dispersed urban and rural population pairs throughout southeastern Australia. Despite frequency and tempo differences between urban and rural calls, call repertoires were similar between habitat types. However, certain song syllables were used more frequently by birds from urban than rural populations. Partial redundancy analysis revealed that both geographic location and habitat characteristics were important predictors of syllable repertoire composition. These findings suggest convergent cultural evolution: urban populations modify both song and call syllables from their local repertoire in response to noise. PMID:22957198

Song convergence in multiple urban populations of silvereyes (Zosterops lateralis).

PubMed

Potvin, Dominique A; Parris, Kirsten M

2012-08-01

Recent studies have revealed differences between urban and rural vocalizations of numerous bird species. These differences include frequency shifts, amplitude shifts, altered song speed, and selective meme use. If particular memes sung by urban populations are adapted to the urban soundscape, "urban-typical" calls, memes, or repertoires should be consistently used in multiple urban populations of the same species, regardless of geographic location. We tested whether songs or contact calls of silvereyes (Zosterops lateralis) might be subject to such convergent cultural evolution by comparing syllable repertoires of geographically dispersed urban and rural population pairs throughout southeastern Australia. Despite frequency and tempo differences between urban and rural calls, call repertoires were similar between habitat types. However, certain song syllables were used more frequently by birds from urban than rural populations. Partial redundancy analysis revealed that both geographic location and habitat characteristics were important predictors of syllable repertoire composition. These findings suggest convergent cultural evolution: urban populations modify both song and call syllables from their local repertoire in response to noise.

Trophic and reproductive ecology of Red Snapper, Lutjanus campechanus, on natural and artificial reefs in the western Gulf of Mexico

NASA Astrophysics Data System (ADS)

Ajemian, M. J.; Wetz, J. J.; Brewton, R. A.; Downey, C. H.; Stunz, G. W.

2016-02-01

Energy exploration in the Gulf of Mexico (Gulf) has resulted in the addition of numerous oil and gas production rigs that have added structurally complex habitat to an area otherwise dominated by bare bottom. The impact of these artificial structures on fish populations is largely unknown and there is ongoing debate about their functionality. Red Snapper (Lutjanus campechanus), an ecologically and economically important sportfish to the region, use natural as well as the artificial reefs created by standing and reefed (toppled or cutoff) oil and gas rigs. However, little is known about how trophic and reproductive characteristics of Red Snapper vary over these multiple habitat types. We analyzed stable isotopic composition (δ13C, δ 15N) of epaxial muscle and compared reproductive potential of Red Snapper (155-855 mm TL) from standing rigs, reefed rigs, and natural hard-bottom habitats off Texas. Red Snapper from standing rig sites were isotopically enriched in δ 15N compared to lower relief habitats, suggesting they were feeding at a higher trophic level on standing rigs. While gonadosomatic indices (GSI) and comparative histology implied a similar spawning season among structure types, GSI was highest for both sexes at standing rigs. These initial results suggest that while standing rigs appear to provide more enriched food resources leading to higher Red Snapper reproductive capacity, the productivity of this species is similar between currently permitted rig decommissioning options (i.e., cutoff and toppled rigs) and natural hard-bottom habitats in the Gulf of Mexico.

Development of habitat suitability indices for the Candy Darter, with cross-scale validation across representative populations

USGS Publications Warehouse

Dunn, Corey G.; Angermeier, Paul

2016-01-01

Understanding relationships between habitat associations for individuals and habitat factors that limit populations is a primary challenge for managers of stream fishes. Although habitat use by individuals can provide insight into the adaptive significance of selected microhabitats, not all habitat parameters will be significant at the population level, particularly when distributional patterns partially result from habitat degradation. We used underwater observation to quantify microhabitat selection by an imperiled stream fish, the Candy Darter Etheostoma osburni, in two streams with robust populations. We developed multiple-variable and multiple-life-stage habitat suitability indices (HSIs) from microhabitat selection patterns and used them to assess the suitability of available habitat in streams where Candy Darter populations were extirpated, localized, or robust. Next, we used a comparative framework to examine relationships among (1) habitat availability across streams, (2) projected habitat suitability of each stream, and (3) a rank for the likely long-term viability (robustness) of the population inhabiting each stream. Habitat selection was characterized by ontogenetic shifts from the low-velocity, slightly embedded areas used by age-0 Candy Darters to the swift, shallow areas with little fine sediment and complex substrate, which were used by adults. Overall, HSIs were strongly correlated with population rank. However, we observed weak or inverse relationships between predicted individual habitat suitability and population robustness for multiple life stages and variables. The results demonstrated that microhabitat selection by individuals does not always reflect population robustness, particularly when based on a single life stage or season, which highlights the risk of generalizing habitat selection that is observed during nonstressful periods or for noncritical resources. These findings suggest that stream fish managers may need to be cautious when implementing conservation measures based solely on observations of habitat selection by individuals and that detailed study at the individual and population levels may be necessary to identify habitat that limits populations.

Keeping Pace with Climate Change: Habitat Protection in the Face of Uncertainty

NASA Astrophysics Data System (ADS)

Flitcroft, R. L.; Burnett, K.; Giannico, G.

2014-12-01

Estuaries provide critical habitat for many economically and culturally important species. In the Pacific Northwest, intertidal and subtidal areas provide critical habitat for production of native and commercial oysters (Olympia oyster Ostrea lurida and Pacific oyster Crassostrea gigas, respectively) that in turn provide refuge and rearing habitat for Dungeness Crab, Metacarcinus magister. Environments ranging from subtidal through freshwater zones provide nursery areas for juvenile salmonids at different development stages in their life history. Most Oregon estuaries have been significantly altered by humans over the past century, reducing the quantity and diversity of available habitats. Management agencies have responded with projects to restore and enhance estuarine habitats. Unfortunately, future climate change and sea-level rise could render many current restoration projects ineffective over time. Planning for habitat restoration that keeps pace with climate change will be critical to the sustainable production of seafood and maintenance of ecosystem function. However, land managers and citizens lack the spatially-explicit data needed to incorporate the potential effects of climate change and sea-level rise into planning for habitat improvement projects in estuarine areas. To meet this need, we developed simple models using LiDAR to characterize the geomorphologies of multiple Oregon estuaries. We were able to map the margin of current mean high tide, and contour intervals associated with different potential increases in mean high tide. Because our analysis relied on digital data, we compared three types of digital data in one estuary to assess the utility of different data sets in predicting changes in estuary shape. For each estuary, we assessed changes in the amount and complexity of edge habitats. The simple modeling approach we applied can also be used to identify areas that may be most amenable to pre-emptive restoration actions to mitigate or enhance habitats under future climatic conditions.

Carryover effects from natal habitat type upon competitive ability lead to trait divergence or source-sink dynamics.

PubMed

Kristensen, Nadiah Pardede; Johansson, Jacob; Chisholm, Ryan A; Smith, Henrik G; Kokko, Hanna

2018-06-25

Local adaptation to rare habitats is difficult due to gene flow, but can occur if the habitat has higher productivity. Differences in offspring phenotypes have attracted little attention in this context. We model a scenario where the rarer habitat improves offspring's later competitive ability - a carryover effect that operates on top of local adaptation to one or the other habitat type. Assuming localised dispersal, so the offspring tend to settle in similar habitat to the natal type, the superior competitive ability of offspring remaining in the rarer habitat hampers immigration from the majority habitat. This initiates a positive feedback between local adaptation and trait divergence, which can thereafter be reinforced by coevolution with dispersal traits that match ecotype to habitat type. Rarity strengthens selection on dispersal traits and promotes linkage disequilibrium between locally adapted traits and ecotype-habitat matching dispersal. We propose that carryover effects may initiate isolation by ecology. © 2018 The Authors. Ecology Letters published by CNRS and John Wiley & Sons Ltd.

Predicting minimum habitat characteristics for the Indiana bat in the Champlain Valley

USGS Publications Warehouse

Watrous, K.S.; Donovan, T.M.; Mickey, R.M.; Darling, S.R.; Hicks, A.C.; Von Oettingen, S. L.

2006-01-01

Predicting potential habitat across a landscape for rare species is extremely challenging. However, partitioned Mahalanobis D2 methods avoid pitfalls commonly encountered when surveying rare species by using data collected only at known species locations. Minimum habitat requirements are then determined by examining a principal components analysis to find consistent habitat characteristics across known locations. We used partitioned D 2 methods to examine minimum habitat requirements of Indiana bats (Myotis sodalis) in the Champlain Valley of Vermont and New York, USA, across 7 spatial scales and map potential habitat for the species throughout the same area. We radiotracked 24 female Indiana bats to their roost trees and across their nighttime foraging areas to collect habitat characteristics at 7 spatial scales: 1) roost trees, 2) 0.1-ha circular plots surrounding the roost trees, 3) home ranges, and 4-7) 0.5-km, 1-km, 2-km, and 3-km buffers surrounding the roost tree. Roost trees (n = 50) typically were tall, dead, large-diameter trees with exfoliating bark, located at low elevations and close to water. Trees surrounding roosts typically were smaller in diameter and shorter in height, but they had greater soundness than the roost trees. We documented 14 home ranges in areas of diverse, patchy land cover types that were close to water with east-facing aspects. Across all landscape extents, area of forest within roost-tree buffers and the aspect across those buffers were the most consistent features. Predictive maps indicated that suitable habitat ranged from 4.7-8.1% of the area examined within the Champlain Valley. These habitat models further understanding of Indiana bat summer habitat by indicating minimum habitat characteristics at multiple scales and can be used to aid management decisions by highlighting potential habitat. Nonetheless, information on juvenile production and recruitment is lacking; therefore, assessments of Indiana bat habitat quality in the region are still incomplete.

[Species composition, diversity and density of small fishes in two different habitats in Niushan Lake].

PubMed

Ye, Shao-Wen; Li, Zhong-Jie; Cao, Wen-Xuan

2007-07-01

This paper studied the spatial distribution of small fishes in a shallow macrophytic lake, Niushan Lake in spring 2003, and its relations with habitat heterogeneity. Based on the macrophyte cover condition, distance from lake shore and water depth, two representative habitat types in the lake were selected. Habitat A was near the shore with dense submersed macrophyte, while habitat B was far from the shore with sparse submersed macrophyte. Small fishes were sampled quantitatively by block net (180 m2), and their densities within the net area were estimated by multiple mark-recapture or Zippin's removal method. The results showed that there were some differences in species composition, biodiversity measurement, and estimated density of small fishes between the two habitats: 1) the catches in habitat A consisted of 14 small fish species from 5 families, among which, benthopelagic species Rhodeus ocellatus, Paracheilognathus imberbis and Pseudorasbora parva were considered as dominant species, while those in habitat B consisted of 9 small fish species from 3 families, among which, bottom species Rhinogobius giurinus and Micropercops swinhonis were dominant; 2) the Bray-Curtis index between the two small fish communities was 0.222, reflecting their low structure similarity, and no significant difference was observed between their rank/ abundance distributions, both of which belonged to log series distribution; 3) the total density of 9 major species in habitat A was 8.71 ind x m(-2), while that of 5 major species in habitat B was only 3.54 ind x m(-2). The fact that the spatial distribution of the small fishes differed with habitats might be related to their habitat need for escaping predators, feeding, and breeding, and thus, aquatic macrophyte habitat should be of significance in the rational exploitation of small fish resources as well as the conservation of fish resource diversity.

Forest vegetation of the Black Hills National Forest of South Dakota and Wyoming: A habitat type classification

Treesearch

George R. Hoffman; Robert R. Alexander

1987-01-01

A vegetation classification based on concepts and methods developed by Daubenmire was used to identify 12 forest habitat types and one shrub habitat type in the Black Hills. Included were two habitat types in the Quercus macrocarpa series, seven in the Pinus ponderosa series, one in the Populus tremuloides series, two in the Picea glaucci series, and one in the...

A multivariate assessment of changes in wetland habitat for waterbirds at Moosehorn National Wildlife Refuge, Maine, USA

USGS Publications Warehouse

Hierl, L.A.; Loftin, C.S.; Longcore, J.R.; McAuley, D.G.; Urban, D.L.

2007-01-01

We assessed changes in vegetative structure of 49 impoundments at Moosehorn National Wildlife Refuge (MNWR), Maine, USA, between the periods 1984-1985 to 2002 with a multivariate, adaptive approach that may be useful in a variety of wetland and other habitat management situations. We used Mahalanobis Distance (MD) analysis to classify the refuge?s wetlands as poor or good waterbird habitat based on five variables: percent emergent vegetation, percent shrub, percent open water, relative richness of vegetative types, and an interspersion juxtaposition index that measures adjacency of vegetation patches. Mahalanobis Distance is a multivariate statistic that examines whether a particular data point is an outlier or a member of a data cluster while accounting for correlations among inputs. For each wetland, we used MD analysis to quantify a distance from a reference condition defined a priori by habitat conditions measured in MNWR wetlands used by waterbirds. Twenty-five wetlands declined in quality between the two periods, whereas 23 wetlands improved. We identified specific wetland characteristics that may be modified to improve habitat conditions for waterbirds. The MD analysis seems ideal for instituting an adaptive wetland management approach because metrics can be easily added or removed, ranges of target habitat conditions can be defined by field-collected data, and the analysis can identify priorities for single or multiple management objectives.

Local Plant Diversity Across Multiple Habitats Supports a Diverse Wild Bee Community in Pennsylvania Apple Orchards.

PubMed

Kammerer, Melanie A; Biddinger, David J; Rajotte, Edwin G; Mortensen, David A

2016-02-01

Wild pollinators supply essential, historically undervalued pollination services to crops and other flowering plant communities with great potential to ensure agricultural production against the loss of heavily relied upon managed pollinators. Local plant communities provision wild bees with crucial floral and nesting resources, but the distribution of floristic diversity among habitat types in North American agricultural landscapes and its effect on pollinators are diverse and poorly understood, especially in orchard systems. We documented floristic diversity in typical mid-Atlantic commercial apple (Malus domestica Borkh.) orchards including the forest and orchard-forest edge ("edge") habitats surrounding orchards in a heterogeneous landscape in south-central Pennsylvania, USA. We also assessed the correlation between plant richness and orchard pollinator communities. In this apple production region, edge habitats are the most species rich, supporting 146 out of 202 plant species recorded in our survey. Plant species richness in the orchard and edge habitats were significant predictors of bee species richness and abundance in the orchard, as well as landscape area of the forest and edge habitats. Both the quantity and quality of forest and edges close to orchards play a significant role in provisioning a diverse wild bee community in this agroecosystem. © The Authors 2015. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Fire ecology of the forest habitat types of central Idaho

Treesearch

M. F. Crane; William C. Fischer

1986-01-01

Discusses fire as an ecological factor for forest habitat types occurring in central Idaho. Identifies "Fire Groups" of habitat types based on fire's role in forest succession. Considerations for fire management are suggested.

Fire ecology of western Montana forest habitat types

Treesearch

William C. Fischer; Anne F. Bradley

1987-01-01

Provides information on fire as an ecological factor for forest habitat types in western Montana. Identifies Fire Groups of habitat types based on fire's role in forest succession. Describes forest fuels and suggests considerations for fire management.

Habitat fragmentation in the temperate zone: a perspective for managers

Treesearch

John Faaborg; Margaret Brittingham; Therese Donovan; John Blake

1993-01-01

Habitat fragmentation occurs when a large, fairly continuous tract of vegetation is converted to other vegetation types such that only scattered fragments of the original type remain. Problems associated with habitat fragmentation include overall habitat loss, increase in edge habitat and edge effects (particularly higher parasitism and nest predation rates), and...

Scale dependence in habitat selection: The case of the endangered brown bear (Ursus arctos) in the Cantabrian Range (NW Spain)

Treesearch

Maria C. Mateo Sanchez; Samuel A. Cushman; Santiago Saura

2013-01-01

Animals select habitat resources at multiple spatial scales. Thus, explicit attention to scale dependency in species-habitat relationships is critical to understand the habitat suitability patterns as perceived by organisms in complex landscapes. Identification of the scales at which particular environmental variables influence habitat selection may be as important as...

Microcomputer software for calculating an elk habitat effectiveness index on Blue Mountain winter ranges.

Treesearch

Mark Hitchcock; Alan Ager

1992-01-01

National Forests in the Pacific Northwest Region have incorporated elk habitat standards into Forest plans to ensure that elk habitat objectives are met on multiple use land allocations. Many Forests have employed versions of the habitat effectiveness index (HEI) as a standard method to evaluate habitat. Field application of the HEI model unfortunately is a formidable...

Predictive Seagrass Habitat Model

EPA Science Inventory

Restoration of ecosystem services provided by seagrass habitats in estuaries requires a firm understanding of the modes of action of multiple interacting stressors including nutrients, climate change, coastal land-use change, and habitat modification. We explored the application...

Population trends, bend use relative to available habitat and within-river-bend habitat use of eight indicator species of Missouri and Lower Kansas River benthic fishes: 15 years after baseline assessment

USGS Publications Warehouse

Wildhaber, Mark L.; Yang, Wen-Hsi; Arab, Ali

2016-01-01

A baseline assessment of the Missouri River fish community and species-specific habitat use patterns conducted from 1996 to 1998 provided the first comprehensive analysis of Missouri River benthic fish population trends and habitat use in the Missouri and Lower Yellowstone rivers, exclusive of reservoirs, and provided the foundation for the present Pallid Sturgeon Population Assessment Program (PSPAP). Data used in such studies are frequently zero inflated. To address this issue, the zero-inflated Poisson (ZIP) model was applied. This follow-up study is based on PSPAP data collected up to 15 years later along with new understanding of how habitat characteristics among and within bends affect habitat use of fish species targeted by PSPAP, including pallid sturgeon. This work demonstrated that a large-scale, large-river, PSPAP-type monitoring program can be an effective tool for assessing population trends and habitat usage of large-river fish species. Using multiple gears, PSPAP was effective in monitoring shovelnose and pallid sturgeons, sicklefin, shoal and sturgeon chubs, sand shiner, blue sucker and sauger. For all species, the relationship between environmental variables and relative abundance differed, somewhat, among river segments suggesting the importance of the overall conditions of Upper and Middle Missouri River and Lower Missouri and Kansas rivers on the habitat usage patterns exhibited. Shoal and sicklefin chubs exhibited many similar habitat usage patterns; blue sucker and shovelnose sturgeon also shared similar responses. For pallid sturgeon, the primary focus of PSPAP, relative abundance tended to increase in Upper and Middle Missouri River paralleling stocking efforts, whereas no evidence of an increasing relative abundance was found in the Lower Missouri River despite stocking.

Integrating spatially explicit indices of abundance and habitat quality: an applied example for greater sage-grouse management

USGS Publications Warehouse

Coates, Peter S.; Casazza, Michael L.; Ricca, Mark A.; Brussee, Brianne E.; Blomberg, Erik J.; Gustafson, K. Benjamin; Overton, Cory T.; Davis, Dawn M.; Niell, Lara E.; Espinosa, Shawn P.; Gardner, Scott C.; Delehanty, David J.

2016-01-01

Predictive species distributional models are a cornerstone of wildlife conservation planning. Constructing such models requires robust underpinning science that integrates formerly disparate data types to achieve effective species management. Greater sage-grouse Centrocercus urophasianus, hereafter “sage-grouse” populations are declining throughout sagebrush-steppe ecosystems in North America, particularly within the Great Basin, which heightens the need for novel management tools that maximize use of available information. Herein, we improve upon existing species distribution models by combining information about sage-grouse habitat quality, distribution, and abundance from multiple data sources. To measure habitat, we created spatially explicit maps depicting habitat selection indices (HSI) informed by > 35 500 independent telemetry locations from > 1600 sage-grouse collected over 15 years across much of the Great Basin. These indices were derived from models that accounted for selection at different spatial scales and seasons. A region-wide HSI was calculated using the HSI surfaces modelled for 12 independent subregions and then demarcated into distinct habitat quality classes. We also employed a novel index to describe landscape patterns of sage-grouse abundance and space use (AUI). The AUI is a probabilistic composite of: (i) breeding density patterns based on the spatial configuration of breeding leks and associated trends in male attendance; and (ii) year-round patterns of space use indexed by the decreasing probability of use with increasing distance to leks. The continuous AUI surface was then reclassified into two classes representing high and low/no use and abundance. Synthesis and applications. Using the example of sage-grouse, we demonstrate how the joint application of indices of habitat selection, abundance, and space use derived from multiple data sources yields a composite map that can guide effective allocation of management intensity across multiple spatial scales. As applied to sage-grouse, the composite map identifies spatially explicit management categories within sagebrush steppe that are most critical to sustaining sage-grouse populations as well as those areas where changes in land use would likely have minimal impact. Importantly, collaborative efforts among stakeholders guide which intersections of habitat selection indices and abundance and space use classes are used to define management categories. Because sage-grouse are an umbrella species, our joint-index modelling approach can help target effective conservation for other sagebrush obligate species, and can be readily applied to species in other ecosystems with similar life histories, such as central-placed breeding.

Integrating spatially explicit indices of abundance and habitat quality: an applied example for greater sage-grouse management.

PubMed

Coates, Peter S; Casazza, Michael L; Ricca, Mark A; Brussee, Brianne E; Blomberg, Erik J; Gustafson, K Benjamin; Overton, Cory T; Davis, Dawn M; Niell, Lara E; Espinosa, Shawn P; Gardner, Scott C; Delehanty, David J

2016-02-01

Predictive species distributional models are a cornerstone of wildlife conservation planning. Constructing such models requires robust underpinning science that integrates formerly disparate data types to achieve effective species management.Greater sage-grouse Centrocercus urophasianus , hereafter 'sage-grouse' populations are declining throughout sagebrush-steppe ecosystems in North America, particularly within the Great Basin, which heightens the need for novel management tools that maximize the use of available information.Herein, we improve upon existing species distribution models by combining information about sage-grouse habitat quality, distribution and abundance from multiple data sources. To measure habitat, we created spatially explicit maps depicting habitat selection indices (HSI) informed by >35 500 independent telemetry locations from >1600 sage-grouse collected over 15 years across much of the Great Basin. These indices were derived from models that accounted for selection at different spatial scales and seasons. A region-wide HSI was calculated using the HSI surfaces modelled for 12 independent subregions and then demarcated into distinct habitat quality classes.We also employed a novel index to describe landscape patterns of sage-grouse abundance and space use (AUI). The AUI is a probabilistic composite of the following: (i) breeding density patterns based on the spatial configuration of breeding leks and associated trends in male attendance; and (ii) year-round patterns of space use indexed by the decreasing probability of use with increasing distance to leks. The continuous AUI surface was then reclassified into two classes representing high and low/no use and abundance. Synthesis and application s. Using the example of sage-grouse, we demonstrate how the joint application of indices of habitat selection, abundance and space use derived from multiple data sources yields a composite map that can guide effective allocation of management intensity across multiple spatial scales. As applied to sage-grouse, the composite map identifies spatially explicit management categories within sagebrush steppe that are most critical to sustaining sage-grouse populations as well as those areas where changes in land use would likely have minimal impact. Importantly, collaborative efforts among stakeholders guide which intersections of habitat selection indices and abundance and space use classes are used to define management categories. Because sage-grouse are an umbrella species, our joint-index modelling approach can help target effective conservation for other sagebrush obligate species and can be readily applied to species in other ecosystems with similar life histories, such as central-placed breeding.

Home range, den selection and habitat use of Carolina northern flying squirrels (Glaucomys sabrinus coloratus)

USGS Publications Warehouse

Diggins, Corinne A.; Silvis, Alexander; Kelly, Christine A.; Ford, W. Mark

2017-01-01

Context: Understanding habitat selection is important for determining conservation and management strategies for endangered species. The Carolina northern flying squirrel (CNFS; Glaucomys sabrinus coloratus) is an endangered subspecies found in the high-elevation montane forests of the southern Appalachians, USA. The primary use of nest boxes to monitor CNFS has provided biased information on habitat use for this subspecies, as nest boxes are typically placed in suitable denning habitat.Aims: We conducted a radio-telemetry study on CNFS to determine home range, den site selection and habitat use at multiple spatial scales.Methods: We radio-collared 21 CNFS in 2012 and 2014–15. We tracked squirrels to diurnal den sites and during night-time activity.Key results: The MCP (minimum convex polygon) home range at 95% for males was 5.2 ± 1.2 ha and for females was 4.0 ± 0.7. The BRB (biased random bridge) home range at 95% for males was 10.8 ± 3.8 ha and for females was 8.3 ± 2.1. Den site (n = 81) selection occurred more frequently in montane conifer dominate forests (81.4%) vs northern hardwood forests or conifer–northern hardwood forests (9.9% and 8.7%, respectively). We assessed habitat selection using Euclidean distance-based analysis at the 2nd order and 3rd order scale. We found that squirrels were non-randomly selecting for habitat at both 2nd and 3rd order scales.Conclusions: At both spatial scales, CNFS preferentially selected for montane conifer forests more than expected based on availability on the landscape. Squirrels selected neither for nor against northern hardwood forests, regardless of availability on the landscape. Additionally, CNFS denned in montane conifer forests more than other habitat types.Implications: Our results highlight the importance of montane conifer to CNFS in the southern Appalachians. Management and restoration activities that increase the quality, connectivity and extent of this naturally rare forest type may be important for long-term conservation of this subspecies, especially with the impending threat of anthropogenic climate change.

Pre‐moult patterns of habitat use and moult site selection by Brent Geese Branta bernicla nigricans: Individuals prospect for moult sites

USGS Publications Warehouse

Lewis, Tyler; Flint, Paul L.; Schmutz, Joel A.; Derksen, Dirk V.

2010-01-01

In environments where habitat quality varies, the mechanism by which individuals assess and select habitats has significant consequences on their spatial distribution and ability to respond to environmental change. Each year, thousands of Black Brent Geese Branta bernicla nigricans migrate to the Teshekpuk Lake Special Area (TLSA), Alaska, to undergo a flightless wing‐moult. Over the last three decades, moulting Brent Geese have changed their distribution within the TLSA, redistributing from inland, freshwater wetlands towards coastal, brackish wetlands. To understand better the mechanism by which Brent Geese select a moult site, as well as reasons behind the long‐term shift of moulting distributions, we examined movements and habitat use of birds marked with GPS‐transmitters during the pre‐moult period. Brent Geese did not generally migrate directly to their moulting site during the pre‐moult period, defined as the time from arrival at the moulting grounds to the onset of flightlessness. Rather, individuals used an average of 3.7 ± 0.6 (se) wetland complexes and travelled a minimum of 95.14 ± 15.84 km during the pre‐moult period. Moreover, 69% of Brent Geese visited their final moult site only to leave and visit other sites before returning for the flightless moult. Brent Geese spent significant time in both inland freshwater and coastal estuarine habitats during the pre‐moult, irrespective of the habitat in which they ultimately moulted. Whereas previous research suggested that Brent Geese choose moult sites based largely upon the experience of previous years, our observations suggest a mechanism of moult site selection whereby Brent Geese ‘prospect’ for moult sites, visiting multiple potential moult sites across varied habitat types, presumably gathering information from each site and correspondingly using this information to choose an appropriate moult site. By allowing individuals to adjust their distributions in response to habitat quality cues that may change annually, such as forage type and availability, prospecting may have influenced the long‐term shift in moulting distributions of Brent Geese in the TLSA.

Upland hardwood habitat types in southwestern North Dakota

Treesearch

Michele M. Girard; Harold Goetz; Ardell J. Bjugstad

1985-01-01

The Daubenmire habitat type method was used to classify the upland hardwood draws of southwestern North Dakota. Preliminary data analysis indicates there are four upland habitat types: Fraxinus pennsylvanica/Prunus virginiana; F. pnnseanica-Ulmus americana/P. virginiana; Populus...

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garono, Ralph; Robinson, Rob

Developing an understanding of the distribution and changes in estuarine and tidal floodplain ecosystems is critical to the management of biological resources in the lower Columbia River. Columbia River plants, fish, and wildlife require specific physicochemical and ecological conditions to sustain their populations. As habitats are degraded or lost, this capability is altered, often irretrievably; those species that cannot adapt are lost from the ecosystem. The Lower Columbia River Estuary Partnership (Estuary Partnership) completed a comprehensive ecosystem protection and enhancement plan for the lower Columbia River and estuary in 1999 (Jerrick, 1999). The plan identified habitat loss and modification asmore » a critical threat to the integrity of the lower Columbia River ecosystem and called for a habitat inventory as a key first step in its long term restoration efforts. In 2000, the Estuary Partnership initiated a multiphase project to produce a spatial data set describing the current location and distribution of estuarine and tidal freshwater habitat cover types along the lower Columbia River from the river mouth to the Bonneville Dam using a consistent methodology and data sources (Fig. 1). The first phase of the project was the development of a broadbrush description of the estuarine and tidal freshwater habitat cover classes for the entire study area ({approx}146 river miles) using Landsat 7 ETM+ satellite imagery. Phase II of the project entailed analysis of the classified satellite imagery from Phase I. Analysis of change in landcover and a summary of the spatial relationships between cover types are part of Phase II. Phase III of the project included the classification of the high resolution hyperspectral imagery collected in 2000 and 2001 for key focal areas within the larger study area. Finally, Phase IV consists of this final report that presents results from refining the Landsat ETM+ classification and provides recommendations for future actions. Previous studies (Thomas, 1980; Thomas, 1983; Graves et al., 1995; NOAA, 1997; Allen, 1999) produced similar landcover data sets; however, most of these studies used multiple and varied data sources and differed from one another in methodologies. Currently, no single data set has been produced using a consistent methodology and uniform scale data, which describes current estuarine and tidal freshwater floodplain cover types from the Columbia's mouth to the Bonneville Dam (Fig. 1). Results from this study will be used by the Estuary Partnership and its cooperators to: (1) develop indicators of 'habitat health' for target species and populations, and biological integrity at the community and ecosystem scales; (2) develop definitions of 'important salmonid habitat'; (3) identify and evaluate potential wetland conservation and restoration sites; (4) track non-indigenous and invasive species; and (5) develop an understanding of how estuarine and floodplain habitats have changed over the past 200 years. This study focused on estuarine and tidal freshwater floodplain habitat cover types, which are important to native species, particularly juvenile salmonids. Results from this study are meant to provide support for the multiple efforts currently underway to recover 12 species of Columbia River salmonids identified as endangered or threatened under the Endangered Species Act. Spatial scale was an important consideration in this study. Our goal was to create a geographic information system (GIS) coverage depicting habitat cover types for the entire 146 river miles of the study area and the associated floodplain, at a spatial resolution sufficient to resolve important estuarine and floodplain features, wherever possible. Thus, in addition to the small scale (30 m pixel size) satellite imagery covering the study area described in this report, we also acquired high spatial resolution imagery ({approx}1.5 m pixel size) for key portions of the study area using a Compact Airborne Spectrographic Imager (CASI). Compared to the rather coarse, low spectral resolution of the satellite imagery, the CASI imagery provides the spectral resolution (19 CASI bands vs. 7 ETM+ Bands) necessary to discriminate between spectrally similar vegetation types and thus provided a greater ability to resolve habitat features important to species such as salmonids. Unfortunately, image acquisition costs and logistics (time and poor weather) prevented complete coverage of the study area at a 1.5 m spatial scale. However, in 2000/01 CASI imagery was collected for several key focal areas including the Chinook watershed, the area around the Astoria Airport mitigation site, Russian Island, Tenasillahe Island, Sauvie Island, Scappose Bay lowlands, Lord and Walker Islands and much of the shoreline. This report presents the classification methodology and initial results from the satellite image classification.« less

Use of seeded exotic grasslands by wintering birds

USGS Publications Warehouse

George, Andrew D.; O'Connell, Timothy J.; Hickman, Karen R.; Leslie,, David M.

2013-01-01

Despite widespread population declines of North American grassland birds, effects of anthropogenic disturbance of wintering habitat of this guild remain poorly understood. We compared avian abundance and habitat structure in fields planted by the exotic grass Old World bluestem (Bothriochloa ischaemum; OWB) to that in native mixed-grass prairie. During winters of 2007-2008 and 2008-2009, we conducted bird and vegetation surveys in six native grass and six OWB fields in Garfield, Grant, and Alfalfa counties, Oklahoma. We recorded 24 species of wintering birds in native fields and 14 species in OWB monocultures. While vegetation structure was similar between field types, abundance of short-eared owls (Asio flammeus), northern harriers (Circus cyaneus) and Smith's longspurs (Calcarius pictus) was higher in OWB fields during at least one year. The use of OWB fields by multiple species occupying different trophic positions suggested that vegetation structure of OWB can meet habitat requirements of some wintering birds, but there is insufficient evidence to determine if it provides superior conditions to native grasses.

An adaptive strategy for reducing Feral Cat predation on endangered hawaiian birds

USGS Publications Warehouse

Hess, S.C.; Banko, P.C.; Hansen, H.

2009-01-01

Despite the long history of Feral Cats Felis catus in Hawai'i, there has been little research to provide strategies to improve control programmes and reduce depredation on endangered species. Our objective Was to develop a predictive model to determine how landscape features on Mauna Kea, such as habitat, elevation, and proximity to roads, may affect the number of Feral Cats captured at each trap. We used log-link generalized linear models and QAIC c model ranking criteria to determine the effect of these factors. We found that The number of cats captured per trap Was related to effort, habitat type, and Whether traps Were located on The West or North Slope of Mauna Kea. We recommend an adaptive management strategy to minimize trapping interference by non-target Small Indian Mongoose Herpestes auropunctatus with toxicants, to focus trapping efforts in M??mane Sophora chrysophylla habitat on the West slope of Mauna Kea, and to cluster traps near others that have previously captured multiple cats.

Determination of Habitat Requirements For Birds in Suburban Areas

Treesearch

Jack Ward Thomas; Richard M. DeGraaf; Joseph C. Mawson

1977-01-01

Songbird populations can be related to habitat components by a method that allows the simultaneous determination of habitat requirements for a variety of species . Through correlation and multiple-regression analyses, 10 bird species were studied in a suburban habitat, which was stratified according to human density. Variables used to account for bird distribution...

A variance-decomposition approach to investigating multiscale habitat associations

USGS Publications Warehouse

Lawler, J.J.; Edwards, T.C.

2006-01-01

The recognition of the importance of spatial scale in ecology has led many researchers to take multiscale approaches to studying habitat associations. However, few of the studies that investigate habitat associations at multiple spatial scales have considered the potential effects of cross-scale correlations in measured habitat variables. When cross-scale correlations in such studies are strong, conclusions drawn about the relative strength of habitat associations at different spatial scales may be inaccurate. Here we adapt and demonstrate an analytical technique based on variance decomposition for quantifying the influence of cross-scale correlations on multiscale habitat associations. We used the technique to quantify the variation in nest-site locations of Red-naped Sapsuckers (Sphyrapicus nuchalis) and Northern Flickers (Colaptes auratus) associated with habitat descriptors at three spatial scales. We demonstrate how the method can be used to identify components of variation that are associated only with factors at a single spatial scale as well as shared components of variation that represent cross-scale correlations. Despite the fact that no explanatory variables in our models were highly correlated (r < 0.60), we found that shared components of variation reflecting cross-scale correlations accounted for roughly half of the deviance explained by the models. These results highlight the importance of both conducting habitat analyses at multiple spatial scales and of quantifying the effects of cross-scale correlations in such analyses. Given the limits of conventional analytical techniques, we recommend alternative methods, such as the variance-decomposition technique demonstrated here, for analyzing habitat associations at multiple spatial scales. ?? The Cooper Ornithological Society 2006.

Classification of the forest vegetation on the National Forests of Arizona and New Mexico

Treesearch

Robert R. Alexander; Frank Ronco

1987-01-01

Forest vegetation classified by habitat types and community types in Arizona and New Mexico are tabulated. Eleven series and 123 habitat and community types are identified; however, these habitat types and community types have been grouped into a lesser number of categories having similar characteristics or synonymous names. The table includes the name, location,...

Ocean acidification in the coastal zone from an organism's perspective: multiple system parameters, frequency domains, and habitats.

PubMed

Waldbusser, George G; Salisbury, Joseph E

2014-01-01

Multiple natural and anthropogenic processes alter the carbonate chemistry of the coastal zone in ways that either exacerbate or mitigate ocean acidification effects. Freshwater inputs and multiple acid-base reactions change carbonate chemistry conditions, sometimes synergistically. The shallow nature of these systems results in strong benthic-pelagic coupling, and marine invertebrates at different life history stages rely on both benthic and pelagic habitats. Carbonate chemistry in coastal systems can be highly variable, responding to processes with temporal modes ranging from seconds to centuries. Identifying scales of variability relevant to levels of biological organization requires a fuller characterization of both the frequency and magnitude domains of processes contributing to or reducing acidification in pelagic and benthic habitats. We review the processes that contribute to coastal acidification with attention to timescales of variability and habitats relevant to marine bivalves.

Pressure-specific and multiple pressure response of fish assemblages in European running waters☆

PubMed Central

Schinegger, Rafaela; Trautwein, Clemens; Schmutz, Stefan

2013-01-01

We classified homogenous river types across Europe and searched for fish metrics qualified to show responses to specific pressures (hydromorphological pressures or water quality pressures) vs. multiple pressures in these river types. We analysed fish taxa lists from 3105 sites in 16 ecoregions and 14 countries. Sites were pre-classified for 15 selected pressures to separate unimpacted from impacted sites. Hierarchical cluster analysis was used to split unimpacted sites into four homogenous river types based on species composition and geographical location. Classification trees were employed to predict associated river types for impacted sites with four environmental variables. We defined a set of 129 candidate fish metrics to select the best reacting metrics for each river type. The candidate metrics represented tolerances/intolerances of species associated with six metric types: habitat, migration, water quality sensitivity, reproduction, trophic level and biodiversity. The results showed that 17 uncorrelated metrics reacted to pressures in the four river types. Metrics responded specifically to water quality pressures and hydromorphological pressures in three river types and to multiple pressures in all river types. Four metrics associated with water quality sensitivity showed a significant reaction in up to three river types, whereas 13 metrics were specific to individual river types. Our results contribute to the better understanding of fish assemblage response to human pressures at a pan-European scale. The results are especially important for European river management and restoration, as it is necessary to uncover underlying processes and effects of human pressures on aquatic communities. PMID:24003262

Impact of Altitudes and Habitats on Valerenic Acid, Total Phenolics, Flavonoids, Tannins, and Antioxidant Activity of Valeriana jatamansi.

PubMed

Jugran, Arun K; Bahukhandi, Amit; Dhyani, Praveen; Bhatt, Indra D; Rawal, Ranbeer S; Nandi, Shyamal K

2016-07-01

The changes in total phenolics, flavonoids, tannins, valerenic acid, and antioxidant activity were assessed in 25 populations of Valeriana jatamansi sampled from 1200 to 2775 m asl and four habitat types of Uttarakhand, West Himalaya. Significant (p < 0.05) variations in total phenolics, flavonoids, valerenic acid, and antioxidant activity in aerial and root portions and across the populations were observed. Antioxidant activity measured by three in vitro antioxidant assays, i.e., 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulphonic) (ABTS) radical scavenging, 2,2'-diphenyl-1-picryylhydrazyl (DPPH) free radical scavenging, and ferric-reducing antioxidant power (FRAP) assays, showed significant (p < 0.05) differences across the populations. However, no clear pattern was found in phytochemicals across the altitudinal range. Among habitat types, (pine, oak, mixed forest, and grassy land), variation in phytochemical content and antioxidant activity were observed. Equal class ranking, neighbor-joining cluster analysis, and principal component analysis (PCA) identified Talwari, Jaberkhet, Manjkhali, and Khirshu populations as promising sources with higher phytochemicals and antioxidant activity. The results recommended that the identified populations with higher value of phytochemicals and antioxidants can be utilized for mass multiplication and breeding program to meet the domestic as well as commercial demand.

Spatial phenotypic and genetic structure of threespine stickleback (Gasterosteus aculeatus) in a heterogeneous natural system, Lake Mývatn, Iceland.

PubMed

Millet, Antoine; Kristjánsson, Bjarni K; Einarsson, Arni; Räsänen, Katja

2013-09-01

Eco-evolutionary responses of natural populations to spatial environmental variation strongly depend on the relative strength of environmental differences/natural selection and dispersal/gene flow. In absence of geographic barriers, as often is the case in lake ecosystems, gene flow is expected to constrain adaptive divergence between environments - favoring phenotypic plasticity or high trait variability. However, if divergent natural selection is sufficiently strong, adaptive divergence can occur in face of gene flow. The extent of divergence is most often studied between two contrasting environments, whereas potential for multimodal divergence is little explored. We investigated phenotypic (body size, defensive structures, and feeding morphology) and genetic (microsatellites) structure in threespine stickleback (Gasterosteus aculeatus) across five habitat types and two basins (North and South) within the geologically young and highly heterogeneous Lake Mývatn, North East Iceland. We found that (1) North basin stickleback were, on average, larger and had relatively longer spines than South basin stickleback, whereas (2) feeding morphology (gill raker number and gill raker gap width) differed among three of five habitat types, and (3) there was only subtle genetic differentiation across the lake. Overall, our results indicate predator and prey mediated phenotypic divergence across multiple habitats in the lake, in face of gene flow.

Spatial phenotypic and genetic structure of threespine stickleback (Gasterosteus aculeatus) in a heterogeneous natural system, Lake Mývatn, Iceland

PubMed Central

Millet, Antoine; Kristjánsson, Bjarni K; Einarsson, Árni; Räsänen, Katja

2013-01-01

Eco-evolutionary responses of natural populations to spatial environmental variation strongly depend on the relative strength of environmental differences/natural selection and dispersal/gene flow. In absence of geographic barriers, as often is the case in lake ecosystems, gene flow is expected to constrain adaptive divergence between environments – favoring phenotypic plasticity or high trait variability. However, if divergent natural selection is sufficiently strong, adaptive divergence can occur in face of gene flow. The extent of divergence is most often studied between two contrasting environments, whereas potential for multimodal divergence is little explored. We investigated phenotypic (body size, defensive structures, and feeding morphology) and genetic (microsatellites) structure in threespine stickleback (Gasterosteus aculeatus) across five habitat types and two basins (North and South) within the geologically young and highly heterogeneous Lake Mývatn, North East Iceland. We found that (1) North basin stickleback were, on average, larger and had relatively longer spines than South basin stickleback, whereas (2) feeding morphology (gill raker number and gill raker gap width) differed among three of five habitat types, and (3) there was only subtle genetic differentiation across the lake. Overall, our results indicate predator and prey mediated phenotypic divergence across multiple habitats in the lake, in face of gene flow. PMID:24223263

Coexistence of behavioural types in an aquatic top predator: a response to resource limitation?

PubMed

Kobler, Alexander; Klefoth, Thomas; Mehner, Thomas; Arlinghaus, Robert

2009-10-01

Intra-population variation in behaviour unrelated to sex, size or age exists in a variety of species. The mechanisms behind behavioural diversification have only been partly understood, but density-dependent resource availability may play a crucial role. To explore the potential coexistence of different behavioural types within a natural fish population, we conducted a radio telemetry study, measuring habitat use and swimming activity patterns of pike (Esox lucius), a sit-and-wait predatory fish. Three behavioural types co-occurred in the study lake. While two types of fish only selected vegetated littoral habitats, the third type opportunistically used all habitats and increased its pelagic occurrence in response to decreasing resource biomasses. There were no differences in size, age or lifetime growth between the three behavioural types. However, habitat-opportunistic pike were substantially more active than the other two behavioural types, which is energetically costly. The identical growth rates exhibited by all behavioural types indicate that these higher activity costs of opportunistic behaviour were compensated for by increased prey consumption in the less favourable pelagic habitat resulting in approximately equal fitness of all pike groups. We conclude that behavioural diversification in habitat use and activity reduces intraspecific competition in preferred littoral habitats. This may facilitate the emergence of an ideal free distribution of pike along resource gradients.

Environment degeneration affects habitat diversity of Tamarix spp. in arid zone

NASA Astrophysics Data System (ADS)

Li, Tiejun; Yang, Weikang

2003-07-01

There are 18 species of Tamarix spp. in China and 16 of them in Xinjiang. As a group of bushes which widespread in salty and sandy land in arid zone, Tamarix spp. had gotten more and more attention by ecologists because of their unique bio-ecological characteristics, ecological and social economy functions. Wide Distribution of Tamarix spp. affects ecological environment stabilization of arid zone in western China. The modern distribution and habitat of Tamarix spp. diversity in Xinjiang were studied in this paper. Result revealed that water (surface water and high groundwater ) is the critical environment factor which determines the modern distribution of Tamarix spp.. Depend on analyzing groundwater lever and salt content of soil(two environment factors), author divided the habitat of Tamarix spp. into six type groups (low salt type with high groundwater, middle salt type with high groundwater, high salt type with high groundwater, low salt type with low groundwater and middle salt type with low groundwater etc.) which consisting of ten habitat types. Habitat of Tamarix spp. in Xinjiang never exists in isolation, but associate with each other. The groundwater lever and salt content of soil varies with the lapse of time, then habitats transform from one type into another and species of Tamarix spp. in habitats transforms accordingly.

Patterns of vegetation and grasshopper community composition.

PubMed

Kemp, W P; Harvey, S J; O'Neill, K M

1990-06-01

A study was conducted to evaluate differences in rangeland grasshopper communities over environmental gradients in Gallatin Valley, Montana, USA. The concept of habitat type (Daubenmire 1966) was used as a basis for discriminating between groupings of patches based on vegetation. A total of 39 patches were selected that represented five recognized grassland habitat types (Mueggler and Stewart 1980), as well as two disturbed types (replanting within a known habitat type). Repeated sampling in 1988 of both the insect and plant communities yielded a total of 40 grasshopper (19 664 individuals) and 97 plant species. Detrended Correspondence Analysis (DCA) indicated that patch classifications based on presence and percent cover of plants were appropriate and showed good between-group (habitat type) separation for patches along gradients of precipitation/elevation and plant community complexity. Results from undisturbed habitats showed that plant and grasshopper species composition changed over observed environmental gradients and suggested that habitat type influenced not only species presence, but also relative abundance. Discussion is presented that relates results with patch-use and core and satellite species paradigms.

Geospatial interface and model for predicting potential seagrass habitat

EPA Science Inventory

Restoration of ecosystem services provided by seagrass habitats in estuaries requires a clear understanding of the modes of action of multiple interacting stressors including nutrients, climate change, coastal land-use change, and habitat modification. We have developed a geos...

Combining Site Occupancy, Breeding Population Sizes and Reproductive Success to Calculate Time-Averaged Reproductive Output of Different Habitat Types: An Application to Tricolored Blackbirds

PubMed Central

Holyoak, Marcel; Meese, Robert J.; Graves, Emily E.

2014-01-01

In metapopulations in which habitat patches vary in quality and occupancy it can be complicated to calculate the net time-averaged contribution to reproduction of particular populations. Surprisingly, few indices have been proposed for this purpose. We combined occupancy, abundance, frequency of occurrence, and reproductive success to determine the net value of different sites through time and applied this method to a bird of conservation concern. The Tricolored Blackbird (Agelaius tricolor) has experienced large population declines, is the most colonial songbird in North America, is largely confined to California, and breeds itinerantly in multiple habitat types. It has had chronically low reproductive success in recent years. Although young produced per nest have previously been compared across habitats, no study has simultaneously considered site occupancy and reproductive success. Combining occupancy, abundance, frequency of occurrence, reproductive success and nest failure rate we found that that large colonies in grain fields fail frequently because of nest destruction due to harvest prior to fledging. Consequently, net time-averaged reproductive output is low compared to colonies in non-native Himalayan blackberry or thistles, and native stinging nettles. Cattail marshes have intermediate reproductive output, but their reproductive output might be improved by active management. Harvest of grain-field colonies necessitates either promoting delay of harvest or creating alternative, more secure nesting habitats. Stinging nettle and marsh colonies offer the main potential sources for restoration or native habitat creation. From 2005–2011 breeding site occupancy declined 3x faster than new breeding colonies were formed, indicating a rapid decline in occupancy. Total abundance showed a similar decline. Causes of variation in the value for reproduction of nesting substrates and factors behind continuing population declines merit urgent investigation. The method we employ should be useful in other metapopulation studies for calculating time-averaged reproductive output for different sites. PMID:24817307

Diversity and Biotic Homogenization of Urban Land-Snail Faunas in Relation to Habitat Types and Macroclimate in 32 Central European Cities

PubMed Central

Horsák, Michal; Lososová, Zdeňka; Čejka, Tomáš; Juřičková, Lucie; Chytrý, Milan

2013-01-01

The effects of non-native species invasions on community diversity and biotic homogenization have been described for various taxa in urban environments, but not for land snails. Here we relate the diversity of native and non-native land-snail urban faunas to urban habitat types and macroclimate, and analyse homogenization effects of non-native species across cities and within the main urban habitat types. Land-snail species were recorded in seven 1-ha plots in 32 cities of ten countries of Central Europe and Benelux (224 plots in total). Each plot represented one urban habitat type characterized by different management and a specific disturbance regime. For each plot, we obtained January, July and mean annual temperature and annual precipitation. Snail species were classified into either native or non-native. The effects of habitat type and macroclimate on the number of native and non-native species were analysed using generalized estimating equations; the homogenization effect of non-native species based on the Jaccard similarity index and homogenization index. We recorded 67 native and 20 non-native species. Besides being more numerous, native species also had much higher beta diversity than non-natives. There were significant differences between the studied habitat types in the numbers of native and non-native species, both of which decreased from less to heavily urbanized habitats. Macroclimate was more important for the number of non-native than native species; however in both cases the effect of climate on diversity was overridden by the effect of urban habitat type. This is the first study on urban land snails documenting that non-native land-snail species significantly contribute to homogenization among whole cities, but both the homogenization and diversification effects occur when individual habitat types are compared among cities. This indicates that the spread of non-native snail species may cause biotic homogenization, but it depends on scale and habitat type. PMID:23936525

Diversity and biotic homogenization of urban land-snail faunas in relation to habitat types and macroclimate in 32 central European cities.

PubMed

Horsák, Michal; Lososová, Zdeňka; Čejka, Tomáš; Juřičková, Lucie; Chytrý, Milan

2013-01-01

The effects of non-native species invasions on community diversity and biotic homogenization have been described for various taxa in urban environments, but not for land snails. Here we relate the diversity of native and non-native land-snail urban faunas to urban habitat types and macroclimate, and analyse homogenization effects of non-native species across cities and within the main urban habitat types. Land-snail species were recorded in seven 1-ha plots in 32 cities of ten countries of Central Europe and Benelux (224 plots in total). Each plot represented one urban habitat type characterized by different management and a specific disturbance regime. For each plot, we obtained January, July and mean annual temperature and annual precipitation. Snail species were classified into either native or non-native. The effects of habitat type and macroclimate on the number of native and non-native species were analysed using generalized estimating equations; the homogenization effect of non-native species based on the Jaccard similarity index and homogenization index. We recorded 67 native and 20 non-native species. Besides being more numerous, native species also had much higher beta diversity than non-natives. There were significant differences between the studied habitat types in the numbers of native and non-native species, both of which decreased from less to heavily urbanized habitats. Macroclimate was more important for the number of non-native than native species; however in both cases the effect of climate on diversity was overridden by the effect of urban habitat type. This is the first study on urban land snails documenting that non-native land-snail species significantly contribute to homogenization among whole cities, but both the homogenization and diversification effects occur when individual habitat types are compared among cities. This indicates that the spread of non-native snail species may cause biotic homogenization, but it depends on scale and habitat type.

Nongame bird communities on managed grasslands in North Dakota

USGS Publications Warehouse

Renken, Rochelle B.; Dinsmore, James J.

1987-01-01

Grazed native prairie, unmanipulated native prairie, and planted alfalfa-wheatgrass habitats each supported prairie bird species unique to that habitat type. Comparisons of the three habitats, using community coefficients and overlap indices, showed that grazed and alfalfa-wheatgrass habitats supported the most dissimilar or unique bird communities. All three habitat types, or habitats with similar vegetation structure, must be incorporated in grassland management plans to support all members of the mixed-grass prairie bird community.

The Steiner Multigraph Problem: Wildlife corridor design for multiple species

Treesearch

Katherine J. Lai; Carla P. Gomes; Michael K. Schwartz; Kevin S. McKelvey; David E. Calkin; Claire A. Montgomery

2011-01-01

The conservation of wildlife corridors between existing habitat preserves is important for combating the effects of habitat loss and fragmentation facing species of concern. We introduce the Steiner Multigraph Problem to model the problem of minimum-cost wildlife corridor design for multiple species with different landscape requirements. This problem can also model...

RELATIONSHIPS BETWEEN JUVENILE WINTER FLOUNDER AND MULTIPLE-SCALE HABITAT VARIATION IN NARRAGANSETT BAY, RHODE ISLAND

EPA Science Inventory

A rapid random-sampling method was used to relate densities of juvenile winter flounder to multiple scales of habitat variation in Narragansett Bay and two nearby coastal lagoons in Rhode Island. We used a 1-m beam trawl with attached video camera, continuous GPS track overlay, ...

Evaluating anthropogenic risk of grassland and forest habitat degradation using land-cover data

Treesearch

Kurt Riitters; James Wickham; Timothy Wade

2009-01-01

The effects of landscape context on habitat quality are receiving increased attention in conservation biology. The objective of this research is to demonstrate a landscape-level approach to mapping and evaluating the anthropogenic risks of grassland and forest habitat degradation by examining habitat context as defined by intensive anthropogenic land uses at multiple...

Balancing feasibility and precision of wildlife habitat analysis in planning for natural resources

Treesearch

Anita T. Morzillo; Joshua S. Halofsky; Jennifer DiMiceli; Blair Csuti; Pamela Comeleo; Miles Hemstrom

2012-01-01

Wildlife conservation often is a central focus in planning for natural resource management. Evaluation of wildlife habitat involves balancing the desire for information about detailed habitat characteristics and the feasibility of completing analyses across large areas. Our objective is to describe tradeoffs made in assessments of wildlife habitat within a multiple-...

Assessing Habitat Suitability at Multiple Scales: A Landscape-Level Approach

Treesearch

Kurt H. Riitters; R.V. O' Neill; K.B. Jones

1997-01-01

The distribution and abundance of many plants and animals are influenced by the spatial arrangement of suitable habitats across landscapes. We derived habitat maps from a digital land cover map of the ~178,000 km2 Chesapeake Bay Watershed by using a spatial filtering algorithm. The regional amounts and patterns of habitats were different for...

The emergence densities of annual cicadas (Hemiptera: Cicadidae) increase with sapling density and are greater near edges in a bottomland hardwood forest.

PubMed

Chiavacci, Scott J; Bednarz, James C; McKay, Tanja

2014-08-01

The emergence densities of cicadas tend to be patchy at multiple spatial scales. While studies have identified habitat conditions related to these patchy distributions, their interpretation has been based primarily on periodical cicada species; habitat factors associated with densities of nonperiodical (i.e., annual) cicadas have remained under studied. This is despite their widespread distribution, diversity, and role as an important trophic resource for many other organisms, particularly within riparian areas. We studied habitat factors associated with the emergence densities of Tibicen spp. in a bottomland hardwood forest in east-central Arkansas. We found emergence densities were greatest in areas of high sapling densities and increased toward forest edges, although sapling density was a much stronger predictor of emergence density. Emergence densities also differed among sample areas within our study system. The habitat features predicting nymph densities were likely driven by a combination of factors affecting female selection of oviposition sites and the effects of habitat conditions on nymph survival. The differences in nymph densities between areas of our system were likely a result of the differential effects of flooding in these areas. Interestingly, our findings were similar to observations of periodical species, suggesting that both types of cicadas select similar habitat characteristics for ovipositing or are under comparable selective pressures during development. Our findings also imply that changes in habitat characteristics because of anthropogenically altered disturbance regimes (e.g., flooding) have the potential to negatively impact both periodical and annual species, which could have dramatic consequences for organisms at numerous trophic levels.

Microbiology of sugar-rich environments: diversity, ecology and system constraints.

PubMed

Lievens, Bart; Hallsworth, John E; Pozo, Maria I; Belgacem, Zouhaier Ben; Stevenson, Andrew; Willems, Kris A; Jacquemyn, Hans

2015-02-01

Microbial habitats that contain an excess of carbohydrate in the form of sugar are widespread in the microbial biosphere. Depending on the type of sugar, prevailing water activity and other substances present, sugar-rich environments can be highly dynamic or relatively stable, osmotically stressful, and/or destabilizing for macromolecular systems, and can thereby strongly impact the microbial ecology. Here, we review the microbiology of different high-sugar habitats, including their microbial diversity and physicochemical parameters, which act to impact microbial community assembly and constrain the ecosystem. Saturated sugar beet juice and floral nectar are used as case studies to explore the differences between the microbial ecologies of low and higher water-activity habitats respectively. Nectar is a paradigm of an open, dynamic and biodiverse habitat populated by many microbial taxa, often yeasts and bacteria such as, amongst many others, Metschnikowia spp. and Acinetobacter spp., respectively. By contrast, thick juice is a relatively stable, species-poor habitat and is typically dominated by a single, xerotolerant bacterium (Tetragenococcus halophilus). A number of high-sugar habitats contain chaotropic solutes (e.g. ethyl acetate, phenols, ethanol, fructose and glycerol) and hydrophobic stressors (e.g. ethyl octanoate, hexane, octanol and isoamyl acetate), all of which can induce chaotropicity-mediated stresses that inhibit or prevent multiplication of microbes. Additionally, temperature, pH, nutrition, microbial dispersion and habitat history can determine or constrain the microbiology of high-sugar milieux. Findings are discussed in relation to a number of unanswered scientific questions. © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.

Shifts in Plant Assemblages Reduce the Richness of Galling Insects Across Edge-Affected Habitats in the Atlantic Forest.

PubMed

Souza, Danielle G; Santos, Jean C; Oliveira, Marcondes A; Tabarelli, Marcelo

2016-10-01

Impacts of habitat loss and fragmentation on specialist herbivores have been rarely addressed. Here we examine the structure of plant and galling insect assemblages in a fragmented landscape of the Atlantic forest to verify a potential impoverishment of these assemblages mediated by edge effects. Saplings and galling insects were recorded once within a 0.1-ha area at habitat level, covering forest interior stands, forest edges, and small fragments. A total of 1,769 saplings from 219 tree species were recorded across all three habitats, with differences in terms of sapling abundance and species richness. Additionally, edge-affected habitats exhibited reduced richness of both host-plant and galling insects at plot and habitat spatial scale. Attack levels also differed among forest types at habitat spatial scale (21.1% of attacked stems in forest interior, 12.4% in small fragments but only 8.5% in forest edges). Plot ordination resulted in three clearly segregated clusters: one formed by forest interior, one by small fragments, and another formed by edge plots. Finally, the indicator species analysis identified seven and one indicator plant species in forest interior and edge-affected habitats, respectively. Consequently, edge effects lead to formation of distinct taxonomic groups and also an impoverished assemblage of plants and galling insects at multiple spatial scales. The results of the present study indicate that fragmentation-related changes in plant assemblages can have a cascade effects on specialist herbivores. Accordingly, hyperfragmented landscapes may not be able to retain an expressive portion of tropical biodiversity. © The Authors 2016. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Habitat structure and body size distributions: Cross-ecosystem comparison for taxa with determinate and indeterminate growth

USGS Publications Warehouse

Nash, Kirsty L.; Allen, Craig R.; Barichievy, Chris; Nystrom, Magnus; Sundstrom, Shana M.; Graham, Nicholas A.J.

2014-01-01

Habitat structure across multiple spatial and temporal scales has been proposed as a key driver of body size distributions for associated communities. Thus, understanding the relationship between habitat and body size is fundamental to developing predictions regarding the influence of habitat change on animal communities. Much of the work assessing the relationship between habitat structure and body size distributions has focused on terrestrial taxa with determinate growth, and has primarily analysed discontinuities (gaps) in the distribution of species mean sizes (species size relationships or SSRs). The suitability of this approach for taxa with indeterminate growth has yet to be determined. We provide a cross-ecosystem comparison of bird (determinate growth) and fish (indeterminate growth) body mass distributions using four independent data sets. We evaluate three size distribution indices: SSRs, species size–density relationships (SSDRs) and individual size–density relationships (ISDRs), and two types of analysis: looking for either discontinuities or abundance patterns and multi-modality in the distributions. To assess the respective suitability of these three indices and two analytical approaches for understanding habitat–size relationships in different ecosystems, we compare their ability to differentiate bird or fish communities found within contrasting habitat conditions. All three indices of body size distribution are useful for examining the relationship between cross-scale patterns of habitat structure and size for species with determinate growth, such as birds. In contrast, for species with indeterminate growth such as fish, the relationship between habitat structure and body size may be masked when using mean summary metrics, and thus individual-level data (ISDRs) are more useful. Furthermore, ISDRs, which have traditionally been used to study aquatic systems, present a potentially useful common currency for comparing body size distributions across terrestrial and aquatic ecosystems.

Landscape-level influences of terrestrial snake occupancy within the southeastern United States.

PubMed

Steen, David A; McClure, Christopher J W; Brock, Jean C; Rudolph, D Craig; Pierce, Josh B; Lee, James R; Humphries, W Jeffrey; Gregory, Beau B; Sutton, William B; Smith, Lora L; Baxley, Danna L; Stevenson, Dirk J; Guyer, Craig

2012-06-01

Habitat loss and degradation are thought to be the primary drivers of species extirpations, but for many species we have little information regarding specific habitats that influence occupancy. Snakes are of conservation concern throughout North America, but effective management and conservation are hindered by a lack of basic natural history information and the small number of large-scale studies designed to assess general population trends. To address this information gap, we compiled detection/nondetection data for 13 large terrestrial species from 449 traps located across the southeastern United States, and we characterized the land cover surrounding each trap at multiple spatial scales (250-, 500-, and 1000-m buffers). We used occupancy modeling, while accounting for heterogeneity in detection probability, to identify habitat variables that were influential in determining the presence of a particular species. We evaluated 12 competing models for each species, representing various hypotheses pertaining to important habitat features for terrestrial snakes. Overall, considerable interspecific variation existed in important habitat variables and relevant spatial scales. For example, kingsnakes (Lampropeltis getula) were negatively associated with evergreen forests, whereas Louisiana pinesnake (Pituophis ruthveni) occupancy increased with increasing coverage of this forest type. Some species were positively associated with grassland and scrub/shrub (e.g., Slowinski's cornsnake, Elaphe slowinskii) whereas others, (e.g., copperhead, Agkistrodon contortrix, and eastern diamond-backed rattlesnake, Crotalus adamanteus) were positively associated with forested habitats. Although the species that we studied may persist in varied landscapes other than those we identified as important, our data were collected in relatively undeveloped areas. Thus, our findings may be relevant when generating conservation plans or restoration goals. Maintaining or restoring landscapes that are most consistent with the ancestral habitat preferences of terrestrial snake assemblages will require a diverse habitat matrix over large spatial scales.

Performing a Launch Depressurization Test on an Inflatable Space Habitat

NASA Technical Reports Server (NTRS)

Martin, Patrick J.; Van Velzer, Paul

2014-01-01

In July, 2014 JPL's Environmental Test Laboratory successfully performed a launch depressurization test on an inflatable space habitat proposed to be installed on the International Space Station. The inflatable habitat is to be launched in the SpaceX Dragon Trunk. During the launch, the unpressurized Dragon Trunk will rapidly change from ground level atmospheric pressure to the vacuum of space. Since the inflatable habitat is tightly folded during launch with multiple layers of bladder, Kevlar fabric sections, and micro-meteoroid shielding, it was not possible to analyze or simulate how the residual air pockets would behave during the launch. If the inflatable habitat does not vent adequately and expands, it could rupture the payload bay of the launch vehicle. A launch depressurization test was chosen as the best way to qualify the inflatable habitat. When stowed, the inflatable habitat measured approximately 241 cm (95 inches) in diameter by 152 cm (60 inches) high and weighed close to 1361 kg (3,000 pounds). Two vacuum chambers connected by a large vacuum line were used to perform this test. The inflatable habitat was mounted in the smaller chamber, which was 396 cm (13 feet) in diameter and 1128 cm (37 feet) high. The larger chamber, which was 823 cm (27 feet) in diameter and 2,591 cm (85 feet) high, was rough pumped and used as a vacuum reservoir. A two stage axial type compressor and ten Stokes vacuum pumps were also used during the depressurization. Opening a butterfly valve on the vacuum line, at the smaller chamber, was manually controlled so that the smaller chamber's depressurization rate matched the launch pressure profile.

Anthropogenic areas as incidental substitutes for original habitat.

PubMed

Martínez-Abraín, Alejandro; Jiménez, Juan

2016-06-01

One speaks of ecological substitutes when an introduced species performs, to some extent, the ecosystem function of an extirpated native species. We suggest that a similar case exists for habitats. Species evolve within ecosystems, but habitats can be destroyed or modified by natural and human-made causes. Sometimes habitat alteration forces animals to move to or remain in a suboptimal habitat type. In that case, the habitat is considered a refuge, and the species is called a refugee. Typically refugee species have lower population growth rates than in their original habitats. Human action may lead to the unintended generation of artificial or semiartificial habitat types that functionally resemble the essential features of the original habitat and thus allow a population growth rate of the same magnitude or higher than in the original habitat. We call such areas substitution habitats and define them as human-made habitats within the focal species range that by chance are partial substitutes for the species' original habitat. We call species occupying a substitution habitat adopted species. These are 2 new terms in conservation biology. Examples of substitution habitats are dams for European otters, wheat and rice fields for many steppeland and aquatic birds, and urban areas for storks, falcons, and swifts. Although substitution habitats can bring about increased resilience against the agents of global change, the conservation of original habitat types remains a conservation priority. © 2016 Society for Conservation Biology.

Fire ecology of Montana forest habitat types east of the Continental Divide

Treesearch

William C. Fischer; Bruce D. Clayton

1983-01-01

Provides information on fire as an ecological factor for forest habitat types occurring east of the Continental Divide in Montana. Identifies "Fire Groups" of habitat types based on fire's role in forest succession. Describes forest fuels and suggests considerations for fire management.

Ground-based simulations of cosmic ray heavy ion interactions in spacecraft and planetary habitat shielding materials

NASA Technical Reports Server (NTRS)

Miller, J.; Zeitlin, C.; Heilbronn, L.; Borak, T.; Carter, T.; Frankel, K. A.; Fukumura, A.; Murakami, T.; Rademacher, S. E.; Schimmerling, W.;

Managing coarse woody debris in forests of the Rocky Mountains

Treesearch

Russell T. Graham; Alan E. Harvey; Martin F. Jurgensen; Theresa B. Jain; Jonalea R. Tonn; Deborah S. Page-Dumroese

1994-01-01

Recommendations for managing coarse woody debris after timber harvest were developed for 14 habitat types, ranging from ponderosa pine (Pinus ponderosa) habitat types of Arizona to subalpine fir (Abies lasiocarpa) habitat types of western Montana. Ectomycorrhizae were used as a bioindicator of healthy, productive forest soils....

A case study of assigning conservation value to dispersed habitat units for conservation planning

USGS Publications Warehouse

Rohweder, Jason J.; Sara C. Vacek,; Crimmins, Shawn M.; Thogmartin, Wayne E.

2015-01-01

Resource managers are increasingly tasked with developing habitat conservation plans in the face of numerous, sometimes competing, objectives. These plans must often be implemented across dispersed habitat conservation units that may contribute unequally to overall conservation objectives. Using U.S. Fish and Wildlife Service waterfowl production areas (WPA) in western Minnesota as our conservation landscape, we develop a landscape-scale approach for evaluating the conservation value of dispersed habitat conservation units with multiple conservation priorities. We evaluated conservation value based on a suite of variables directly applicable to conservation management practices, thus providing a direct link between conservation actions and outcomes. We developed spatial models specific to each of these conservation objectives and also developed two freely available prioritization tools to implement these analyses. We found that some WPAs provided high conservation value across a range of conservation objectives, suggesting that managing these specific areas would achieve multiple conservation goals. Conversely, other WPAs provided low conservation value for some objectives, suggesting they would be most effectively managed for a distinct set of specific conservation goals. Approaches such as ours provide a direct means of assessing the conservation value of dispersed habitat conservation units and could be useful in the development of habitat management plans, particularly when faced with multiple conservation objectives.

Boat-Wave-Induced Bank Erosion on the Kenai River, Alaska

DTIC Science & Technology

2008-03-01

with coir log habitat restoration. .....................................................................75 Figure 51. Type 1 bank with willow...various types of streambank stabilization. Common stabilization techniques consist of root wads, spruce tree revetments, coir logs, and riprap...restoration. ERDC TR-08-5 75 Figure 50. Type 1 bank with coir log habitat restoration. Figure 51. Type 1 bank with willow plantings/ladder access habitat

Multiple metal resistance in the cyanobacterium Nostoc muscorum

DOE Office of Scientific and Technical Information (OSTI.GOV)

Verma, S.K.; Singh, S.P.

1995-04-01

Metal tolerant strains of microbes are likely to originate in habitats having elevated metal levels. This aspect has been reviewed quite extensively by Silvers and Misra and the suggested mechanism of metal tolerance are: (a) cellular exclusion of metals; (b) extrusion of metals; and (c) intracellular immobilization. Similar studies on cyanobacterial strains appear to have been initiated by Shehata and Whitton who isolated a Zn-tolerant strain of Anacystis nidulans displaying a Zn uptake comparable to the Zn-sensitive wild type. The metal tolerance in the above strain was attributed to the intracellular detoxification mechanisms as suggested for Plectonema boryanum and Nostocmore » calcicola. The Cd-resistant strain of A. nidulans showed a protection of Cd-induced growth inhibition due to reduce uptake of metal. Recently we reported an energy- and dilution-dependent efflux of copper as the mechanism of Cu tolerance in a copper-resistant strain of Nostoc calcicola. The above studies were concerned mainly with single-metal resistance in cyanobacteria. Since natural habitats are generally characterized by the coexistence of a large number of toxic and nontoxic cations, it is necessary to study multiple-metal response on the physiology and biochemistry of microorganisms. In the presence study, therefore, we describe a multiple metal resistant strain of the cyanobacterium Nostoc muscorum. 15 refs., 1 fig., 1 tab.« less

Resampling method for applying density-dependent habitat selection theory to wildlife surveys.

PubMed

Tardy, Olivia; Massé, Ariane; Pelletier, Fanie; Fortin, Daniel

2015-01-01

Isodar theory can be used to evaluate fitness consequences of density-dependent habitat selection by animals. A typical habitat isodar is a regression curve plotting competitor densities in two adjacent habitats when individual fitness is equal. Despite the increasing use of habitat isodars, their application remains largely limited to areas composed of pairs of adjacent habitats that are defined a priori. We developed a resampling method that uses data from wildlife surveys to build isodars in heterogeneous landscapes without having to predefine habitat types. The method consists in randomly placing blocks over the survey area and dividing those blocks in two adjacent sub-blocks of the same size. Animal abundance is then estimated within the two sub-blocks. This process is done 100 times. Different functional forms of isodars can be investigated by relating animal abundance and differences in habitat features between sub-blocks. We applied this method to abundance data of raccoons and striped skunks, two of the main hosts of rabies virus in North America. Habitat selection by raccoons and striped skunks depended on both conspecific abundance and the difference in landscape composition and structure between sub-blocks. When conspecific abundance was low, raccoons and striped skunks favored areas with relatively high proportions of forests and anthropogenic features, respectively. Under high conspecific abundance, however, both species preferred areas with rather large corn-forest edge densities and corn field proportions. Based on random sampling techniques, we provide a robust method that is applicable to a broad range of species, including medium- to large-sized mammals with high mobility. The method is sufficiently flexible to incorporate multiple environmental covariates that can reflect key requirements of the focal species. We thus illustrate how isodar theory can be used with wildlife surveys to assess density-dependent habitat selection over large geographic extents.

Using Qualitative and Quantitative Methods to Choose a Habitat Quality Metric for Air Pollution Policy Evaluation

PubMed Central

Ford, Adriana E. S.; Smart, Simon M.; Henrys, Peter A.; Ashmore, Mike R.

2016-01-01

Atmospheric nitrogen (N) deposition has had detrimental effects on species composition in a range of sensitive habitats, although N deposition can also increase agricultural productivity and carbon storage, and favours a few species considered of importance for conservation. Conservation targets are multiple, and increasingly incorporate services derived from nature as well as concepts of intrinsic value. Priorities vary. How then should changes in a set of species caused by drivers such as N deposition be assessed? We used a novel combination of qualitative semi-structured interviews and quantitative ranking to elucidate the views of conservation professionals specialising in grasslands, heathlands and mires. Although conservation management goals are varied, terrestrial habitat quality is mainly assessed by these specialists on the basis of plant species, since these are readily observed. The presence and abundance of plant species that are scarce, or have important functional roles, emerged as important criteria for judging overall habitat quality. However, species defined as ‘positive indicator-species’ (not particularly scarce, but distinctive for the habitat) were considered particularly important. Scarce species are by definition not always found, and the presence of functionally important species is not a sufficient indicator of site quality. Habitat quality as assessed by the key informants was rank-correlated with the number of positive indicator-species present at a site for seven of the nine habitat classes assessed. Other metrics such as species-richness or a metric of scarcity were inconsistently or not correlated with the specialists’ assessments. We recommend that metrics of habitat quality used to assess N pollution impacts are based on the occurrence of, or habitat-suitability for, distinctive species. Metrics of this type are likely to be widely applicable for assessing habitat change in response to different drivers. The novel combined qualitative and quantitative approach taken to elucidate the priorities of conservation professionals could be usefully applied in other contexts. PMID:27557277

Demographic differences of black-capped vireos in 2 habitat types in central Texas

USGS Publications Warehouse

Noa, L.A.; Hirth, D.H.; Donovan, T.M.; Cimprich, D.

2007-01-01

To understand the effects of habitat selection, we analyzed differences in abundance, age structure, and nesting success of black-capped vireos (Vireo atricapilla) in 2 early successional habitat types found on Fort Hood, a 87,890-ha Military Reservation in central Texas, USA. These habitats were 1) large areas of continuously shrubby vegetation (both natural and mechanically made), referred to as shrubland habitat, and 2) anthropogenically created small patches of shrubby vegetation centered on one or several large trees, known locally as donut habitat. The objectives of our study were to determine whether there were differences in abundance, age structure, and daily nest survival in these 2 habitat types and to determine whether donut habitat is high- or low-quality habitat. Donut habitat had a lower abundance of vireos (half as many as shrubland/point count) and a higher percentage of second-year males, suggesting donut habitat was lower-quality habitat than shrubland. Analyses of daily nest survival indicated that habitat, nest height, and year were all important variables. Nests initiated in 2004, located in shrubland habitats, and higher from the ground were more likely to succeed. Our study provided evidence that habitat is a limiting factor for this federally endangered species. Because habitat is limiting, wildlife biologists at Fort Hood should focus on managing higher quality, contiguous shrubland habitat. Wildlife biologists should also continue to monitor areas of donut habitat to determine whether they represent potential population sinks.

Dynamics of habitat selection in birds: adaptive response to nest predation depends on multiple factors.

PubMed

Devries, J H; Clark, R G; Armstrong, L M

2018-05-01

According to theory, habitat selection by organisms should reflect underlying habitat-specific fitness consequences and, in birds, reproductive success has a strong impact on population growth in many species. Understanding processes affecting habitat selection also is critically important for guiding conservation initiatives. Northern pintails (Anas acuta) are migratory, temperate-nesting birds that breed in greatest concentrations in the prairies of North America and their population remains below conservation goals. Habitat loss and changing land use practices may have decoupled formerly reliable fitness cues with respect to nest habitat choices. We used data from 62 waterfowl nesting study sites across prairie Canada (1997-2009) to examine nest survival, a primary fitness metric, at multiple scales, in combination with estimates of habitat selection (i.e., nests versus random points), to test for evidence of adaptive habitat choices. We used the same habitat covariates in both analyses. Pintail nest survival varied with nest initiation date, nest habitat, pintail breeding pair density, landscape composition and annual moisture. Selection of nesting habitat reflected patterns in nest survival in some cases, indicating adaptive selection, but strength of habitat selection varied seasonally and depended on population density and landscape composition. Adaptive selection was most evident late in the breeding season, at low breeding densities and in cropland-dominated landscapes. Strikingly, at high breeding density, habitat choice appears to become maladaptive relative to nest predation. At larger spatial scales, the relative availability of habitats with low versus high nest survival, and changing land use practices, may limit the reproductive potential of pintails.

Scale and plant invasions: A theory of biotic acceptance

USGS Publications Warehouse

Stohlgren, T.J.; Jarnevich, C.; Chong, G.W.; Evangelista, P.H.

2006-01-01

We examined the relationship between native and alien plant species richness, cover, and estimated biomass at multiple spatial scales. The large dataset included 70511-m2 subplots, 1443 10-m2 subplots, and 727100-m2 subplots, nested in 727 1000-m2 plots in 37 natural vegetation types in seven states in the central United States. We found that native and alien species richness (averaged across the vegetation types) increased significantly with plot area. Furthermore, the relationship between native and alien species richness became increasingly positive and significant from the plant neighbourhood scale (1-m2) to the 10-m2, 100-m2, and the 1000-m2 scale where over 80% of the vegetation types had positive slopes between native and alien species richness. Both native and alien plant species may be responding to increased resource availability and/or habitat heterogeneity with increased area. We found significant positive relationships between the coefficient of variation of native cover in 1-m2 subplots in a vegetation type (i.e. a measure of habitat heterogeneity), and both the relative cover and relative biomass of alien plant species. At the 1000-m2 scale, we did find weak negative relationships between native species richness and the cover, biomass, and relative cover of alien plant species. However, we found very strong positive relationships between alien species richness and the cover, relative cover, and relative biomass of alien species at regional scales. These results, along with many other field studies in natural ecosystems, show that the dominant genera pattern in invasion ecology at multiple spatial scales is one of "biotic acceptance" where natural ecosystems tend to accommodate the establishment and coexistence of introduced species despite the presence and abundance of native species.

Habitat risk assessment for regional ocean planning in the U.S. Northeast and Mid-Atlantic.

PubMed

Wyatt, Katherine H; Griffin, Robert; Guerry, Anne D; Ruckelshaus, Mary; Fogarty, Michael; Arkema, Katie K

2017-01-01

Coastal habitats provide important benefits to people, including habitat for species targeted by fisheries and opportunities for tourism and recreation. Yet, such human activities also can imperil these habitats and undermine the ecosystem services they provide to people. Cumulative risk assessment provides an analytical framework for synthesizing the influence of multiple stressors across habitats and decision-support for balancing human uses and ecosystem health. To explore cumulative risk to habitats in the U.S. Northeast and Mid-Atlantic Ocean Planning regions, we apply the open-source InVEST Habitat Risk Assessment model to 13 habitats and 31 stressors in an exposure-consequence framework. In doing so, we advance the science priorities of EBM and both regional planning bodies by synthesizing the wealth of available data to improve our understanding of human uses and how they affect marine resources. We find that risk to ecosystems is greatest first, along the coast, where a large number of stressors occur in close proximity and secondly, along the continental shelf, where fewer, higher consequence activities occur. Habitats at greatest risk include soft and hard-bottom nearshore areas, tidal flats, soft-bottom shelf habitat, and rocky intertidal zones-with the degree of risk varying spatially. Across all habitats, our results indicate that rising sea surface temperatures, commercial fishing, and shipping consistently and disproportionally contribute to risk. Further, our findings suggest that management in the nearshore will require simultaneously addressing the temporal and spatial overlap as well as intensity of multiple human activities and that management in the offshore requires more targeted efforts to reduce exposure from specific threats. We offer a transparent, generalizable approach to evaluating cumulative risk to multiple habitats and illustrate the spatially heterogeneous nature of impacts along the eastern Atlantic coast and the importance of spatial scale in estimating such impacts. These results offer a valuable decision-support tool by helping to constrain the decision space, focus attention on habitats and locations at the greatest risk, and highlight effect management strategies.

Habitat risk assessment for regional ocean planning in the U.S. Northeast and Mid-Atlantic

PubMed Central

Guerry, Anne D.; Ruckelshaus, Mary; Fogarty, Michael; Arkema, Katie K.

2017-01-01

Coastal habitats provide important benefits to people, including habitat for species targeted by fisheries and opportunities for tourism and recreation. Yet, such human activities also can imperil these habitats and undermine the ecosystem services they provide to people. Cumulative risk assessment provides an analytical framework for synthesizing the influence of multiple stressors across habitats and decision-support for balancing human uses and ecosystem health. To explore cumulative risk to habitats in the U.S. Northeast and Mid-Atlantic Ocean Planning regions, we apply the open-source InVEST Habitat Risk Assessment model to 13 habitats and 31 stressors in an exposure-consequence framework. In doing so, we advance the science priorities of EBM and both regional planning bodies by synthesizing the wealth of available data to improve our understanding of human uses and how they affect marine resources. We find that risk to ecosystems is greatest first, along the coast, where a large number of stressors occur in close proximity and secondly, along the continental shelf, where fewer, higher consequence activities occur. Habitats at greatest risk include soft and hard-bottom nearshore areas, tidal flats, soft-bottom shelf habitat, and rocky intertidal zones—with the degree of risk varying spatially. Across all habitats, our results indicate that rising sea surface temperatures, commercial fishing, and shipping consistently and disproportionally contribute to risk. Further, our findings suggest that management in the nearshore will require simultaneously addressing the temporal and spatial overlap as well as intensity of multiple human activities and that management in the offshore requires more targeted efforts to reduce exposure from specific threats. We offer a transparent, generalizable approach to evaluating cumulative risk to multiple habitats and illustrate the spatially heterogeneous nature of impacts along the eastern Atlantic coast and the importance of spatial scale in estimating such impacts. These results offer a valuable decision-support tool by helping to constrain the decision space, focus attention on habitats and locations at the greatest risk, and highlight effect management strategies. PMID:29261672

Fish species and community distributions as proxies for seafloor habitat distributions: The Stellwagen Bank National Marine Sanctuary example (Northwest Atlantic, Gulf of Maine)

USGS Publications Warehouse

Auster, P.J.; Joy, K.; Valentine, P.C.

2001-01-01

Defining the habitats of fishes and associated fauna on outer continental shelves is problematic given the paucity of data on the actual types and distributions of seafloor habitats. However many regions have good data on the distributions of fishes from resource surveys or catch statistics because of the economic importance of the fisheries. Fish distribution data (species or communities) have been used as a proxy for the distribution of habitats to develop precautionary conservation strategies for habitat protection (e.g., marine protected areas, fishing gear restrictions). In this study we assessed the relationships between the distributions of fish communities and species derived from trawl survey data with the spatial distribution of sediment types determined by sampling and acoustic reflectance derived from multibeam sonar surveys in Stellwagen Bank National Marine Sanctuary. Fish communities were correlated with reflectance values but all communities did not occur in unique sediment types. This suggests that use of community distributions as proxies for habitats should include the caveat that a greater number of communities within an area could indicate a greater range of habitat types. Single species distributions showed relationships between abundance and reflectance values. Trawl catches with low abundances had wide variations in reflectance values while those with high abundances had narrower ranges indicating habitat affinities. Significant non-random frequency-dependent relationships were observed for 17 of 20 species although only 12 of 20 species had significant relationships based on rank correlation. These results suggest that species distributions based on trawl survey data can be used as proxies for the distribution of seafloor habitats. Species with known habitat associations can be used to infer habitat requirements of co-occurring species and can be used to identify a range of habitat types.

Fish species and community distributions as proxies for sea-floor habitat distributions: the Stellwagen Bank National Marine Sanctuary example (northwest Atlantic, Gulf Of Maine)

USGS Publications Warehouse

Auster, Peter J.; Joy, Kevin; Valentine, Page C.

2001-01-01

Defining the habitats of fishes and associated fauna on outer continental shelves is problematic given the paucity of data on the actual types and distributions of seafloor habitats. However many regions have good data on the distributions of fishes from resource surveys or catch statistics because of the economic importance of the fisheries. Fish distribution data (species or communities) have been used as a proxy for the distribution of habitats to develop precautionary conservation strategies for habitat protection (e.g., marine protected areas, fishing gear restrictions). In this study we assessed the relationships between the distributions of fish communities and species derived from trawl survey data with the spatial distribution of sediment types determined by sampling and acoustic reflectance derived from multibeam sonar surveys in Stellwagen Bank National Marine Sanctuary. Fish communities were correlated with reflectance values but all communities did not occur in unique sediment types. This suggests that use of community distributions as proxies for habitats should include the caveat that a greater number of communities within an area could indicate a greater range of habitat types. Single species distributions showed relationships between abundance and reflectance values. Trawl catches with low abundances had wide variations in reflectance values while those with high abundances had narrower ranges indicating habitat affinities. Significant non-random frequency-dependent relationships were observed for 17 of 20 species although only 12 of 20 species had significant relationships based on rank correlation. These results suggest that species distributions based on trawl survey data can be used as proxies for the distribution of seafloor habitats. Species with known habitat associations can be used to infer habitat requirements of co-occurring species and can be used to identify a range of habitat types.

A synthesis of European seahorse taxonomy, population structure, and habitat use as a basis for assessment, monitoring and conservation.

PubMed

Woodall, Lucy C; Otero-Ferrer, Francisco; Correia, Miguel; Curtis, Janelle M R; Garrick-Maidment, Neil; Shaw, Paul W; Koldewey, Heather J

2018-01-01

Accurate taxonomy, population demography, and habitat descriptors inform species threat assessments and the design of effective conservation measures. Here we combine published studies with new genetic, morphological and habitat data that were collected from seahorse populations located along the European and North African coastlines to help inform management decisions for European seahorses. This study confirms the presence of only two native seahorse species ( Hippocampus guttulatus and H. hippocampus ) across Europe, with sporadic occurrence of non-native seahorse species in European waters. For the two native species, our findings demonstrate that highly variable morphological characteristics, such as size and presence or number of cirri, are unreliable for distinguishing species. Both species exhibit sex dimorphism with females being significantly larger. Across its range, H. guttulatus were larger and found at higher densities in cooler waters, and individuals in the Black Sea were significantly smaller than in other populations. H. hippocampus were significantly larger in Senegal. Hippocampus guttulatus tends to have higher density populations than H. hippocampus when they occur sympatrically. Although these species are often associated with seagrass beds, data show both species inhabit a wide variety of shallow habitats and use a mixture of holdfasts. We suggest an international mosaic of protected areas focused on multiple habitat types as the first step to successful assessment, monitoring and conservation management of these Data Deficient species.

Multi level ecological fitting: indirect life cycles are not a barrier to host switching and invasion.

PubMed

Malcicka, Miriama; Agosta, Salvatore J; Harvey, Jeffrey A

2015-09-01

Many invasive species are able to escape from coevolved enemies and thus enjoy a competitive advantage over native species. However, during the invasion phase, non-native species must overcome many ecological and/or physiological hurdles before they become established and spread in their new habitats. This may explain why most introduced species either fail to establish or remain as rare interstitials in their new ranges. Studies focusing on invasive species have been based on plants or animals where establishment requires the possession of preadapted traits from their native ranges that enables them to establish and spread in their new habitats. The possession of preadapted traits that facilitate the exploitation of novel resources or to colonize novel habitats is known as 'ecological fitting'. Some species have evolved traits and life histories that reflect highly intimate associations with very specific types of habitats or niches. For these species, their phenological windows are narrow, and thus the ability to colonize non-native habitats requires that a number of conditions need to be met in accordance with their more specialized life histories. Some of the strongest examples of more complex ecological fitting involve invasive parasites that require different animal hosts to complete their life cycles. For instance, the giant liver fluke, Fascioloides magna, is a major parasite of several species of ungulates in North America. The species exhibits a life cycle whereby newly hatched larvae must find suitable intermediate hosts (freshwater snails) and mature larvae, definitive hosts (ungulates). Intermediate and definitive host ranges of F. magna in its native range are low in number, yet this parasite has been successfully introduced into Europe where it has become a parasite of native European snails and deer. We discuss how the ability of these parasites to overcome multiple ecophysiological barriers represents an excellent example of 'multiple-level ecological fitting'. © 2015 John Wiley & Sons Ltd.

Songbird use of regenerating forest, glade, and edge habitat types

Treesearch

Alix D. Fink; Frank R., III Thompson; April A. Tudor

2006-01-01

Population numbers of many bird species associated with early-successional or disturbance-dependent habitat types are declining. We used an information-theoretic approach to evaluate hypotheses concerning factors affecting breeding bird densities in different early-successional habitat types. We studied shrubland bird communities in 3- to 5-year-old regenerating forest...

Use of Shallow Lagoon Habitats by Nekton of the Northeastern Gulf of Mexico

EPA Science Inventory

We compared nekton use of prominent habitat types within a lagoonal system of the northeastern Gulf of Mexico (GoM). These habitat types were defined by combinations of structure (cover type) and location (distance from shore) as: Spartina edge (<1m from shore), Spartina 3 m from...

Soil Characteristics Driving Arbuscular Mycorrhizal Fungal Communities in Semiarid Mediterranean Soils

PubMed Central

Torres, Maria Pilar; Montesinos-Navarro, Alicia; Roldán, Antonio

2016-01-01

ABSTRACT We investigated communities of arbuscular mycorrhizal fungi (AMF) in the roots and the rhizosphere soil of Brachypodium retusum in six different natural soils under field conditions. We explored phylogenetic patterns of AMF composition using indicator species analyses to find AMF associated with a given habitat (root versus rhizosphere) or soil type. We tested whether the AMF characteristics of different habitats or contrasting soils were more closely related than expected by chance. Then we used principal-component analysis and multivariate analysis of variance to test for the relative contribution of each factor in explaining the variation in fungal community composition. Finally, we used redundancy analysis to identify the soil properties that significantly explained the differences in AMF communities across soil types. The results pointed out a tendency of AMF communities in roots to be closely related and different from those in the rhizosphere soil. The indicator species analyses revealed AMF associated with rhizosphere soil and the root habitat. Soil type also determined the distribution of AMF communities in soils, and this effect could not be attributed to a single soil characteristic, as at least three soil properties related to microbial activity, i.e., pH and levels of two micronutrients (Mn and Zn), played significant roles in triggering AMF populations. IMPORTANCE Communities of arbuscular mycorrhizal fungi (AMF) are main components of soil biota that can determine the productivity of ecosystems. These fungal assemblages vary across host plants and ecosystems, but the main ecological processes that shape the structures of these communities are still largely unknown. A field study in six different soil types from semiarid areas revealed that AMF communities are significantly influenced by habitat (soil versus roots) and soil type. In addition, three soil properties related to microbiological activity (i.e., pH and manganese and zinc levels) were the main factors triggering the distribution of AMF. These results contribute to a better understanding of the ecological factors that can shape AMF communities, an important soil microbial group that affects multiple ecosystem functions. PMID:27016567

Soil Characteristics Driving Arbuscular Mycorrhizal Fungal Communities in Semiarid Mediterranean Soils.

PubMed

Alguacil, Maria Del Mar; Torres, Maria Pilar; Montesinos-Navarro, Alicia; Roldán, Antonio

2016-06-01

We investigated communities of arbuscular mycorrhizal fungi (AMF) in the roots and the rhizosphere soil of Brachypodium retusum in six different natural soils under field conditions. We explored phylogenetic patterns of AMF composition using indicator species analyses to find AMF associated with a given habitat (root versus rhizosphere) or soil type. We tested whether the AMF characteristics of different habitats or contrasting soils were more closely related than expected by chance. Then we used principal-component analysis and multivariate analysis of variance to test for the relative contribution of each factor in explaining the variation in fungal community composition. Finally, we used redundancy analysis to identify the soil properties that significantly explained the differences in AMF communities across soil types. The results pointed out a tendency of AMF communities in roots to be closely related and different from those in the rhizosphere soil. The indicator species analyses revealed AMF associated with rhizosphere soil and the root habitat. Soil type also determined the distribution of AMF communities in soils, and this effect could not be attributed to a single soil characteristic, as at least three soil properties related to microbial activity, i.e., pH and levels of two micronutrients (Mn and Zn), played significant roles in triggering AMF populations. Communities of arbuscular mycorrhizal fungi (AMF) are main components of soil biota that can determine the productivity of ecosystems. These fungal assemblages vary across host plants and ecosystems, but the main ecological processes that shape the structures of these communities are still largely unknown. A field study in six different soil types from semiarid areas revealed that AMF communities are significantly influenced by habitat (soil versus roots) and soil type. In addition, three soil properties related to microbiological activity (i.e., pH and manganese and zinc levels) were the main factors triggering the distribution of AMF. These results contribute to a better understanding of the ecological factors that can shape AMF communities, an important soil microbial group that affects multiple ecosystem functions. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Multiscale habitat selection of wetland birds in the northern Gulf Coast

USGS Publications Warehouse

Pickens, Bradley A.; King, Sammy L.

2014-01-01

The spatial scale of habitat selection has become a prominent concept in ecology, but has received less attention in coastal ecology. In coastal marshes, broad-scale marsh types are defined by vegetation composition over thousands of hectares, water-level management is applied over hundreds of hectares, and fine-scale habitat is depicted by tens of meters. Individually, these scales are known to affect wetland fauna, but studies have not examined all three spatial scales simultaneously. We investigated wetland bird habitat selection at the three scales and compared single- and multiscale models. From 2009 to 2011, we surveyed marsh birds (i.e., Rallidae, bitterns, grebes), shorebirds, and wading birds in fresh and intermediate (oligohaline) coastal marsh in Louisiana and Texas, USA. Within each year, six repeated surveys of wintering, resident, and migratory breeding birds were conducted at > 100 points (n = 304). The results revealed fine-scale factors, primarily water depth, were consistently better predictors than marsh type or management. However, 10 of 11 species had improved models with the three scales combined. Birds with a linear association with water depth were, correspondingly, most abundant with deeper fresh marsh and permanently impounded water. Conversely, intermediate marsh had a greater abundance of shallow water species, such as king rail Rallus elegans, least bittern Ixobrychus exilis, and sora Porzana carolina. These birds had quadratic relationships with water depth or no relationship. Overall, coastal birds were influenced by multiple scales corresponding with hydrological characteristics. The effects suggest the timing of drawdowns and interannual variability in spring water levels can greatly affect wetland bird abundance.

Multi-scale habitat selection modeling: A review and outlook

Treesearch

Kevin McGarigal; Ho Yi Wan; Kathy A. Zeller; Brad C. Timm; Samuel A. Cushman

2016-01-01

Scale is the lens that focuses ecological relationships. Organisms select habitat at multiple hierarchical levels and at different spatial and/or temporal scales within each level. Failure to properly address scale dependence can result in incorrect inferences in multi-scale habitat selection modeling studies.

Fish assemblages in coastal lagoons in land-uplift succession: The relative importance of local and regional environmental gradients

NASA Astrophysics Data System (ADS)

Snickars, Martin; Sandström, Alfred; Lappalainen, Antti; Mattila, Johanna; Rosqvist, Kajsa; Urho, Lauri

2009-01-01

The assemblages of young-of-the-year fish were studied in coastal lagoons in an archipelago with post-glacial land-uplift, which affects environmental gradients at local and regional scale, i.e. lagoon habitat isolation and archipelago position, respectively. The categorisation of 40 undisturbed lagoons into nine habitat types based on habitat isolation and archipelago position was supported by clear relationships with spring temperature and total fish abundance. Rutilus rutilus, breams ( Abramis/Blicca sp.) and Perca fluviatilis were the most abundant and frequently occurring species. The fish assemblage differed among the nine habitat types. Rutilus rutilus, P. fluviatilis and breams were discriminating species in the majority of habitat types with low physical harshness, whereas Alburnus alburnus and Gasterosteus aculeatus increased their contributions in habitat types with high physical harshness. Rutilus rutilus and breams were thus common in lagoons with high habitat isolation situated in the inner archipelago. These lagoons were characterised by warm water and high vegetation coverage. Gasterosteus aculeatus was restricted to lagoons with low habitat isolation and exposure and low vegetation coverage, situated in the outer archipelago. Perca fluviatilis had the widest distribution of all species. The coverage of two macrophytes, Potamogeton perfoliatus and Zannichellia palustris, and salinity matched best the distance among habitat types. These habitat characteristics, as well as the fish abundances and assemblages differed most across the habitat types in the outer and mid archipelago zones and in the lowest habitat isolation. These patterns suggest that the structuring effect of habitat isolation increases along the archipelago gradient as differences between local and regional conditions increase. In the inner archipelago, overall low physical harshness induces homogeneous conditions and the habitat isolation is less important here than in the other zones. We suggest that this difference in the relative importance of the two gradients depending on the level of respective gradient ultimately forms these heterogeneous coastal habitats in a successional landscape. Rutilus rutilus and P. fluviatilis were responsible for large parts of the assemblage patterns. Although sympatric due to similar habitat requirements, differences in dispersal capability, competitive ability and predation vulnerability may add explanation to detected differences in distribution and abundance in these two species in an open system. Our results also stress the structuring role of vegetation in terms of total coverage and species composition, as these two aspects of macrophyte diversity may act as complementary habitat modifiers across gradients of physical harshness.

Coniferous forest habitat types of central and southern Utah

Treesearch

Andrew P. Youngblood; Ronald L. Mauk

1985-01-01

A land-classification system based upon potential natural vegetation is presented for the coniferous forests of central and southern Utah. It is based on reconnaissance sampling of about 720 stands. A hierarchical taxonomic classification of forest sites was developed using the habitat type concept. Seven climax series, 37 habitat types, and six additional phases of...

Forest habitat types of Montana

Treesearch

Robert D. Pfister; Bernard L. Kovalchik; Stephen F. Arno; Richard C. Presby

1977-01-01

A land-classification system based upon potential natural vegetation is presented for the forests of Montana. It is based on an intensive 4-year study and reconnaissance sampling of about 1,500 stands. A hierarchical classification of forest sites was developed using the habitat type concept. A total of 9 climax series, 64 habitat types, and 37 additional phases of...

Assessing risks to multiple resources affected by wildfire and forest management using an integrated probabilistic framework

Treesearch

Steven P. Norman; Danny C. Lee; Sandra Jacobson; Christine Damiani

2010-01-01

The tradeoffs that surround forest management are inherently complex, often involving multiple temporal and spatial scales. For example, conflicts may result when fuel treatments are designed to mediate long-term fuel hazards, but activities could impair sensitive aquatic habitat or degrade wildlife habitat in the short term. This complexity makes it hard for managers...

Reconstructing fish movements between coastal wetland and nearshore habitats of the Great Lakes

EPA Science Inventory

The use of resources from multiple habitats has been shown to be important to the production of aquatic consumers. To quantify the support of Great Lakes coastal wetland (WL) and nearshore (NS) habitats to yellow perch, we used otolith microchemistry to trace movements between th...

Habitat modeling for biodiversity conservation.

Treesearch

Bruce G. Marcot

2006-01-01

Habitat models address only 1 component of biodiversity but can be useful in addressing and managing single or multiple species and ecosystem functions, for projecting disturbance regimes, and in supporting decisions. I review categories and examples of habitat models, their utility for biodiversity conservation, and their roles in making conservation decisions. I...

IMPLICATIONS OF INTER-HABITAT VARIATION FOR MONITORING GREAT RIVER ECOSYSTEMS: EMAP-UMR EXPERIENCE

EPA Science Inventory

Great River ecosystems (GREs) are complex mosaics of habitats that vary at multiple scales. GRE monitoring designs can capture some but not all of this variation. Each discrete habitat, however defined, must either be sampled as a separate strata or "resource population", combine...

EMPIRICAL RISK RELATIONSHIPS BETWEEN INVERTEBRATES, HABITAT AND WATER QUALITY IN MAIA DATA SETS

EPA Science Inventory

A technique for developing a non-weighted risk index, originally developed for use with Ohio fish assemblage data, was applied to invertebrate, habitat and water quality data collected from Mid-Atlantic streams of the U.S. during 1997-98. Multiple habitat and water quality varia...

Fine-scale movements and habitat use of juvenile southern flounder Paralichthys lethostigma in an estuarine seascape.

PubMed

Furey, N B; Dance, M A; Rooker, J R

2013-05-01

Habitat use of juvenile southern flounder Paralichthys lethostigma was examined within a shallow estuarine seascape during June and July 2011 using acoustic telemetry. Fine-scale movement and habitat use of P. lethostigma was investigated with an acoustic positioning system placed in a seascape that varied in habitat type, physicochemical conditions and bathymetry. The use of different habitat types was examined with Euclidean distance-based analyses, and generalized additive models were used to determine the relative importance of habitat type relative to physicochemical conditions and bathymetry. Tracks of P. lethostigma ranged in distance between 1477 and 8582 m and speed was 4·2 ± 1·1 m min⁻¹ (mean ± s.e.) for all P. lethostigma combined. Depth, slope and habitat type had the most influence on P. lethostigma occurrence and deep sandy areas with shallow slopes were used most frequently. In addition, depth use by P. lethostigma was influenced by tidal cycles, indicating habitat use varies temporally and is dynamic. Finally, temperatures <30·5° C were used more than warmer waters within the study area. The results successfully identify movements by juvenile P. lethostigma, and indicate that definitions of essential habitats need to account for dynamics in habitat use. © 2013 The Authors. Journal of Fish Biology © 2013 The Fisheries Society of the British Isles.

A comparison of seed banks across a sand dune successional gradient at Lake Michigan dunes (Indiana, USA)

USGS Publications Warehouse

Leicht-Young, S. A.; Pavlovic, N.B.; Grundel, R.; Frohnapple, K.J.

2009-01-01

In habitats where disturbance is frequent, seed banks are important for the regeneration of vegetation. Sand dune systems are dynamic habitats in which sand movement provides intermittent disturbance. As succession proceeds from bare sand to forest, the disturbance decreases. At Indiana Dunes National Lakeshore, we examined the seed banks of three habitat types across a successional gradient: foredunes, secondary dunes, and oak savanna. There were differences among the types of species that germinated from each of the habitats. The mean seed bank density increased across the successional gradient by habitat, from 376 to 433 to 968 seeds m-2, but with foredune and secondary dune seed bank densities being significantly lower than the savanna seed bank density. The number of seeds germinated was significantly correlated with soil organic carbon, demonstrating for this primary successional sequence that seed density increases with stage and age. The seed bank had much lower species richness than that of the aboveground vegetation across all habitats. Among sites within a habitat type, the similarity of species germinated from the seed banks was very low, illustrating the variability of the seed bank even in similar habitat types. These results suggest that restoration of these habitats cannot rely on seed banks alone. ?? 2008 Springer Science+Business Media B.V.

The Mangrove Nursery Paradigm Revisited: Otolith Stable Isotopes Support Nursery-to-Reef Movements by Indo-Pacific Fishes

PubMed Central

Kimirei, Ismael A.; Nagelkerken, Ivan; Mgaya, Yunus D.; Huijbers, Chantal M.

2013-01-01

Mangroves and seagrass beds have long been perceived as important nurseries for many fish species. While there is growing evidence from the Western Atlantic that mangrove habitats are intricately connected to coral reefs through ontogenetic fish migrations, there is an ongoing debate of the value of these coastal ecosystems in the Indo-Pacific. The present study used natural tags, viz. otolith stable carbon and oxygen isotopes, to investigate for the first time the degree to which multiple tropical juvenile habitats subsidize coral reef fish populations in the Indo Pacific (Tanzania). Otoliths of three reef fish species (Lethrinus harak, L. lentjan and Lutjanus fulviflamma) were collected in mangrove, seagrass and coral reef habitats and analyzed for stable isotope ratios in the juvenile and adult otolith zones. δ13C signatures were significantly depleted in the juvenile compared to the adult zones, indicative of different habitat use through ontogeny. Maximum likelihood analysis identified that 82% of adult reef L. harak had resided in either mangrove (29%) or seagrass (53%) or reef (18%) habitats as juveniles. Of adult L. fulviflamma caught from offshore reefs, 99% had passed through mangroves habitats as juveniles. In contrast, L. lentjan adults originated predominantly from coral reefs (65–72%) as opposed to inshore vegetated habitats (28–35%). This study presents conclusive evidence for a nursery role of Indo-Pacific mangrove habitats for reef fish populations. It shows that intertidal habitats that are only temporarily available can form an important juvenile habitat for some species, and that reef fish populations are often replenished by multiple coastal habitats. Maintaining connectivity between inshore vegetated habitats and coral reefs, and conserving habitat mosaics rather than single nursery habitats, is a major priority for the sustainability of various Indo Pacific fish populations. PMID:23776658

The mangrove nursery paradigm revisited: otolith stable isotopes support nursery-to-reef movements by Indo-Pacific fishes.

PubMed

Kimirei, Ismael A; Nagelkerken, Ivan; Mgaya, Yunus D; Huijbers, Chantal M

2013-01-01

Mangroves and seagrass beds have long been perceived as important nurseries for many fish species. While there is growing evidence from the Western Atlantic that mangrove habitats are intricately connected to coral reefs through ontogenetic fish migrations, there is an ongoing debate of the value of these coastal ecosystems in the Indo-Pacific. The present study used natural tags, viz. otolith stable carbon and oxygen isotopes, to investigate for the first time the degree to which multiple tropical juvenile habitats subsidize coral reef fish populations in the Indo Pacific (Tanzania). Otoliths of three reef fish species (Lethrinus harak, L. lentjan and Lutjanus fulviflamma) were collected in mangrove, seagrass and coral reef habitats and analyzed for stable isotope ratios in the juvenile and adult otolith zones. δ(13)C signatures were significantly depleted in the juvenile compared to the adult zones, indicative of different habitat use through ontogeny. Maximum likelihood analysis identified that 82% of adult reef L. harak had resided in either mangrove (29%) or seagrass (53%) or reef (18%) habitats as juveniles. Of adult L. fulviflamma caught from offshore reefs, 99% had passed through mangroves habitats as juveniles. In contrast, L. lentjan adults originated predominantly from coral reefs (65-72%) as opposed to inshore vegetated habitats (28-35%). This study presents conclusive evidence for a nursery role of Indo-Pacific mangrove habitats for reef fish populations. It shows that intertidal habitats that are only temporarily available can form an important juvenile habitat for some species, and that reef fish populations are often replenished by multiple coastal habitats. Maintaining connectivity between inshore vegetated habitats and coral reefs, and conserving habitat mosaics rather than single nursery habitats, is a major priority for the sustainability of various Indo Pacific fish populations.

Responses of terrestrial herpetofauna to persistent, novel ecosystems resulting from mountaintop removal mining

USGS Publications Warehouse

Williams, Jennifer M.; Brown, Donald J.; Wood, Petra B.

2017-01-01

Mountaintop removal mining is a large-scale surface mining technique that removes entire floral and faunal communities, along with soil horizons located above coal seams. In West Virginia, the majority of this mining occurs on forested mountaintops. However, after mining ceases the land is typically reclaimed to grasslands and shrublands, resulting in novel ecosystems. In this study, we examined responses of herpetofauna to these novel ecosystems 10–28 y postreclamation. We quantified differences in species-specific habitat associations, (sub)order-level abundances, and habitat characteristics in four habitat types: reclaimed grassland, reclaimed shrubland, forest fragments in mined areas, and nonmined intact forest. Habitat type accounted for 33.2% of the variation in species-specific captures. With few exceptions, forest specialists were associated with intact forest and fragmented forest sites, while habitat generalists were either associated with grassland and shrubland sites or were distributed among all habitat types. At the (sub)order level, salamander (Order Urodela) captures were highest at fragmented and intact forest sites, frog and toad (Order Anura) captures were lowest at intact forest sites, and snake (Suborder Serpentes) captures were highest at shrubland sites. Habitat type was a strong predictor for estimated total abundance of urodeles, but not for anurans or snakes. Tree stem densities in grasslands differed from the other three habitat types, and large trees (>38 cm diameter at breast height) were only present at forest sites. Overstory vegetation cover was greater in forested than in reclaimed habitat types. Ground cover in reclaimed grasslands was distinct from forest treatments with generally less woody debris and litter cover and more vegetative cover. It is important to consider the distributions of habitat specialists of conservation concern when delineating potential mountaintop mine sites, as these sites will likely contain unsuitable habitat for forest specialists for decades or centuries when reclaimed to grassland or shrubland.

Evaluation of biochemical and haematological parameters and prevalence of selected pathogens in feral cats from urban and rural habitats in South Korea.

PubMed

Hwang, Jusun; Gottdenker, Nicole; Min, Mi-Sook; Lee, Hang; Chun, Myung-Sun

2016-06-01

In this study, we evaluated the potential association between the habitat types of feral cats and the prevalence of selected infectious pathogens and health status based on a set of blood parameters. We live-trapped 72 feral cats from two different habitat types: an urban area (n = 48) and a rural agricultural area (n = 24). We compared blood values and the prevalence of feline immunodeficiency virus (FIV), feline leukaemia virus (FeLV) and haemotropic Mycoplasma infection in feral cats from the two contrasting habitats. Significant differences were observed in several blood values (haematocrit, red blood cells, blood urea nitrogen, creatinine) depending on the habitat type and/or sex of the cat. Two individuals from the urban area were seropositive for FIV (3.0%), and eight (12.1%) were positive for FeLV infection (five from an urban habitat and three from a rural habitat). Haemoplasma infection was more common. Based on molecular analysis, 38 cats (54.3%) were positive for haemoplasma, with a significantly higher infection rate in cats from rural habitats (70.8%) compared with urban cats (47.8%). Our study recorded haematological and serum biochemical values, and prevalence of selected pathogens in feral cat populations from two different habitat types. A subset of important laboratory parameters from rural cats showed values under or above the corresponding reference intervals for healthy domestic cats, suggesting potential differences in the health status of feral cats depending on the habitat type. Our findings provide information about the association between 1) blood values (haematological and serum biochemistry parameters) and 2) prevalence of selected pathogen infections and different habitat types; this may be important for veterinarians who work with feral and/or stray cats and for overall cat welfare management. © ISFM and AAFP 2015.

Optimizing larval assessment to support sea lamprey control in the Great Lakes

USGS Publications Warehouse

Hansen, Michael J.; Adams, Jean V.; Cuddy, Douglas W.; Richards, Jessica M.; Fodale, Michael F.; Larson, Geraldine L.; Ollila, Dale J.; Slade, Jeffrey W.; Steeves, Todd B.; Young, Robert J.; Zerrenner, Adam

2003-01-01

Elements of the larval sea lamprey (Petromyzon marinus) assessment program that most strongly influence the chemical treatment program were analyzed, including selection of streams for larval surveys, allocation of sampling effort among stream reaches, allocation of sampling effort among habitat types, estimation of daily growth rates, and estimation of metamorphosis rates, to determine how uncertainty in each element influenced the stream selection program. First, the stream selection model based on current larval assessment sampling protocol significantly underestimated transforming sea lam-prey abundance, transforming sea lampreys killed, and marginal costs per sea lamprey killed, compared to a protocol that included more years of data (especially for large streams). Second, larval density in streams varied significantly with Type-I habitat area, but not with total area or reach length. Third, the ratio of larval density between Type-I and Type-II habitat varied significantly among streams, and that the optimal allocation of sampling effort varied with the proportion of habitat types and variability of larval density within each habitat. Fourth, mean length varied significantly among streams and years. Last, size at metamorphosis varied more among years than within or among regions and that metamorphosis varied significantly among streams within regions. Study results indicate that: (1) the stream selection model should be used to identify streams with potentially high residual populations of larval sea lampreys; (2) larval sampling in Type-II habitat should be initiated in all streams by increasing sampling in Type-II habitat to 50% of the sampling effort in Type-I habitat; and (3) methods should be investigated to reduce uncertainty in estimates of sea lamprey production, with emphasis on those that reduce the uncertainty associated with larval length at the end of the growing season and those used to predict metamorphosis.

Models that predict standing crop of stream fish from habitat variables: 1950-85.

Treesearch

K.D. Fausch; C.L. Hawkes; M.G. Parsons

1988-01-01

We reviewed mathematical models that predict standing crop of stream fish (number or biomass per unit area or length of stream) from measurable habitat variables and classified them by the types of independent habitat variables found significant, by mathematical structure, and by model quality. Habitat variables were of three types and were measured on different scales...

Environmental characteristics of the Grand Fir Mosaic and adjacent habitat types

Treesearch

Dennis E. Ferguson; John C. Byrne

2000-01-01

Grand Fir Mosaic habitats differ from adjacent forest habitats in their slow rate of secondary succession to woody vegetation. Remote monitoring stations were used to sample the environment at a Grand Fir Mosaic site and three adjacent habitat types. The Grand Fir Mosaic site has shorter growing seasons, cooler temperatures, and more soil moisture than the other sites...

Structure, function and management of semi-natural habitats for conservation biological control: a review of European studies.

PubMed

Holland, John M; Bianchi, Felix Jja; Entling, Martin H; Moonen, Anna-Camilla; Smith, Barbara M; Jeanneret, Philippe

2016-09-01

Different semi-natural habitats occur on farmland, and it is the vegetation's traits and structure that subsequently determine their ability to support natural enemies and their associated contribution to conservation biocontrol. New habitats can be created and existing ones improved with agri-environment scheme funding in all EU member states. Understanding the contribution of each habitat type can aid the development of conservation control strategies. Here we review the extent to which the predominant habitat types in Europe support natural enemies, whether this results in enhanced natural enemy densities in the adjacent crop and whether this leads to reduced pest densities. Considerable variation exists in the available information for the different habitat types and trophic levels. Natural enemies within each habitat were the most studied, with less information on whether they were enhanced in adjacent fields, while their impact on pests was rarely investigated. Most information was available for woody and herbaceous linear habitats, yet not for woodland which can be the most common semi-natural habitat in many regions. While the management and design of habitats offer potential to stimulate conservation biocontrol, we also identified knowledge gaps. A better understanding of the relationship between resource availability and arthropod communities across habitat types, the spatiotemporal distribution of resources in the landscape and interactions with other factors that play a role in pest regulation could contribute to an informed management of semi-natural habitats for biocontrol. © 2016 Society of Chemical Industry. © 2016 Society of Chemical Industry.

Spatial scaling of core and dominant forest cover in the Upper Mississippi and Illinois River floodplains, USA

USGS Publications Warehouse

De Jager, Nathan R.; Rohweder, Jason J.

2011-01-01

Different organisms respond to spatial structure in different terms and across different spatial scales. As a consequence, efforts to reverse habitat loss and fragmentation through strategic habitat restoration ought to account for the different habitat density and scale requirements of various taxonomic groups. Here, we estimated the local density of floodplain forest surrounding each of ~20 million 10-m forested pixels of the Upper Mississippi and Illinois River floodplains by using moving windows of multiple sizes (1–100 ha). We further identified forest pixels that met two local density thresholds: 'core' forest pixels were nested in a 100% (unfragmented) forested window and 'dominant' forest pixels were those nested in a >60% forested window. Finally, we fit two scaling functions to declines in the proportion of forest cover meeting these criteria with increasing window length for 107 management-relevant focal areas: a power function (i.e. self-similar, fractal-like scaling) and an exponential decay function (fractal dimension depends on scale). The exponential decay function consistently explained more variation in changes to the proportion of forest meeting both the 'core' and 'dominant' criteria with increasing window length than did the power function, suggesting that elevation, soil type, hydrology, and human land use constrain these forest types to a limited range of scales. To examine these scales, we transformed the decay constants to measures of the distance at which the probability of forest meeting the 'core' and 'dominant' criteria was cut in half (S 1/2, m). S 1/2 for core forest was typically between ~55 and ~95 m depending on location along the river, indicating that core forest cover is restricted to extremely fine scales. In contrast, half of all dominant forest cover was lost at scales that were typically between ~525 and 750 m, but S 1/2 was as long as 1,800 m. S 1/2 is a simple measure that (1) condenses information derived from multi-scale analyses, (2) allows for comparisons of the amount of forest habitat available to species with different habitat density and scale requirements, and (3) can be used as an index of the spatial continuity of habitat types that do not scale fractally.

Sexual dimorphism in bite performance drives morphological variation in chameleons.

PubMed

da Silva, Jessica M; Herrel, Anthony; Measey, G John; Tolley, Krystal A

2014-01-01

Phenotypic performance in different environments is central to understanding the evolutionary and ecological processes that drive adaptive divergence and, ultimately, speciation. Because habitat structure can affect an animal's foraging behaviour, anti-predator defences, and communication behaviour, it can influence both natural and sexual selection pressures. These selective pressures, in turn, act upon morphological traits to maximize an animal's performance. For performance traits involved in both social and ecological activities, such as bite force, natural and sexual selection often interact in complex ways, providing an opportunity to understand the adaptive significance of morphological variation with respect to habitat. Dwarf chameleons within the Bradypodion melanocephalum-Bradypodion thamnobates species complex have multiple phenotypic forms, each with a specific head morphology that could reflect its use of either open- or closed-canopy habitats. To determine whether these morphological differences represent adaptations to their habitats, we tested for differences in both absolute and relative bite performance. Only absolute differences were found between forms, with the closed-canopy forms biting harder than their open-canopy counterparts. In contrast, sexual dimorphism was found for both absolute and relative bite force, but the relative differences were limited to the closed-canopy forms. These results indicate that both natural and sexual selection are acting within both habitat types, but to varying degrees. Sexual selection seems to be the predominant force within the closed-canopy habitats, which are more protected from aerial predators, enabling chameleons to invest more in ornamentation for communication. In contrast, natural selection is likely to be the predominant force in the open-canopy habitats, inhibiting the development of conspicuous secondary sexual characteristics and, ultimately, enforcing their overall diminutive body size and constraining performance.

Sexual Dimorphism in Bite Performance Drives Morphological Variation in Chameleons

PubMed Central

da Silva, Jessica M.; Herrel, Anthony; Measey, G. John; Tolley, Krystal A.

2014-01-01

Phenotypic performance in different environments is central to understanding the evolutionary and ecological processes that drive adaptive divergence and, ultimately, speciation. Because habitat structure can affect an animal’s foraging behaviour, anti-predator defences, and communication behaviour, it can influence both natural and sexual selection pressures. These selective pressures, in turn, act upon morphological traits to maximize an animal’s performance. For performance traits involved in both social and ecological activities, such as bite force, natural and sexual selection often interact in complex ways, providing an opportunity to understand the adaptive significance of morphological variation with respect to habitat. Dwarf chameleons within the Bradypodion melanocephalum-Bradypodion thamnobates species complex have multiple phenotypic forms, each with a specific head morphology that could reflect its use of either open- or closed-canopy habitats. To determine whether these morphological differences represent adaptations to their habitats, we tested for differences in both absolute and relative bite performance. Only absolute differences were found between forms, with the closed-canopy forms biting harder than their open-canopy counterparts. In contrast, sexual dimorphism was found for both absolute and relative bite force, but the relative differences were limited to the closed-canopy forms. These results indicate that both natural and sexual selection are acting within both habitat types, but to varying degrees. Sexual selection seems to be the predominant force within the closed-canopy habitats, which are more protected from aerial predators, enabling chameleons to invest more in ornamentation for communication. In contrast, natural selection is likely to be the predominant force in the open-canopy habitats, inhibiting the development of conspicuous secondary sexual characteristics and, ultimately, enforcing their overall diminutive body size and constraining performance. PMID:24475183

Body size and hosts of Triatoma infestans populations affect the size of bloodmeal contents and female fecundity in rural northwestern Argentina

PubMed Central

Fernández, María del Pilar; Cecere, María Carla; Cohen, Joel E.

2017-01-01

Human sleeping quarters (domiciles) and chicken coops are key source habitats of Triatoma infestans—the principal vector of the infection that causes Chagas disease—in rural communities in northern Argentina. Here we investigated the links among individual bug bloodmeal contents (BMC, mg), female fecundity, body length (L, mm), host blood sources and habitats. We tested whether L, habitat and host blood conferred relative fitness advantages using generalized linear mixed-effects models and a multimodel inference approach with model averaging. The data analyzed include 769 late-stage triatomines collected in 120 sites from six habitats in 87 houses in Figueroa, Santiago del Estero, during austral spring. L correlated positively with other body-size surrogates and was modified by habitat type, bug stage and recent feeding. Bugs from chicken coops were significantly larger than pig-corral and kitchen bugs. The best-fitting model of log BMC included habitat, a recent feeding, bug stage, log Lc (mean-centered log L) and all two-way interactions including log Lc. Human- and chicken-fed bugs had significantly larger BMC than bugs fed on other hosts whereas goat-fed bugs ranked last, in consistency with average blood-feeding rates. Fecundity was maximal in chicken-fed bugs from chicken coops, submaximal in human- and pig-fed bugs, and minimal in goat-fed bugs. This study is the first to reveal the allometric effects of body-size surrogates on BMC and female fecundity in a large set of triatomine populations occupying multiple habitats, and discloses the links between body size, microsite temperatures and various fitness components that affect the risks of transmission of Trypanosoma cruzi. PMID:29211791

Body size and hosts of Triatoma infestans populations affect the size of bloodmeal contents and female fecundity in rural northwestern Argentina.

PubMed

Gürtler, Ricardo E; Fernández, María Del Pilar; Cecere, María Carla; Cohen, Joel E

2017-12-01

Human sleeping quarters (domiciles) and chicken coops are key source habitats of Triatoma infestans-the principal vector of the infection that causes Chagas disease-in rural communities in northern Argentina. Here we investigated the links among individual bug bloodmeal contents (BMC, mg), female fecundity, body length (L, mm), host blood sources and habitats. We tested whether L, habitat and host blood conferred relative fitness advantages using generalized linear mixed-effects models and a multimodel inference approach with model averaging. The data analyzed include 769 late-stage triatomines collected in 120 sites from six habitats in 87 houses in Figueroa, Santiago del Estero, during austral spring. L correlated positively with other body-size surrogates and was modified by habitat type, bug stage and recent feeding. Bugs from chicken coops were significantly larger than pig-corral and kitchen bugs. The best-fitting model of log BMC included habitat, a recent feeding, bug stage, log Lc (mean-centered log L) and all two-way interactions including log Lc. Human- and chicken-fed bugs had significantly larger BMC than bugs fed on other hosts whereas goat-fed bugs ranked last, in consistency with average blood-feeding rates. Fecundity was maximal in chicken-fed bugs from chicken coops, submaximal in human- and pig-fed bugs, and minimal in goat-fed bugs. This study is the first to reveal the allometric effects of body-size surrogates on BMC and female fecundity in a large set of triatomine populations occupying multiple habitats, and discloses the links between body size, microsite temperatures and various fitness components that affect the risks of transmission of Trypanosoma cruzi.

Survey of the Mosquitoes (Diptera: Culicidae) of Mayotte

PubMed Central

Le Goff, Gilbert; Goodman, Steven M.; Elguero, Eric; Robert, Vincent

2014-01-01

A transversal survey of immature mosquitoes was conducted on Mayotte Island (France) in the Comoros Archipelago, western Indian Ocean, with the aim to inventory the Culicidae and to document inter-species relationships in different habitats. In total 420 habitats were sampled for larvae and/or pupae mosquitoes, resulting in more than 6,000 specimens. Forty species belonging to 15 genera were collected, with eight taxa integrated for the first time to the Mayotte mosquito list. The most frequently recorded species were Stegomyia aegypti, St. albopicta, Anopheles gambiae and Eretmapodites subsimplicipes, the first three species being known vectors of viruses and parasites transmitted to humans. Mean species richness in habitats ranged from 1.00 to 3.29, with notable differences between habitats. For example, water-filled axils of banana leaves, tree-holes and crab-holes had low species richness, while cut bamboo, water pools, abandoned tires and marsh and swamp water had notably higher species richness. Twenty-seven mosquito species belonging to 12 genera were routinely collected (in ≥20% of at least one type of larval habitat) suggesting that multiple species play a role in the biocenosis of these aquatic habitats. Multispecies association was observed in 52% of the habitats. The co-occurrence of up to six species belonging to five genera was recorded in a single habitat. The mosquitoes of Mayotte show notable biogeographical affinities to those of Madagascar, as compared to the African continent. These two potential source areas are nearly equidistant from Mayotte, which in turn indicates biased dispersal from east to west. Our findings suggest that with relatively short-term intensive sampling in different habitats, it is possible to approach exhaustive species inventories based on collection of larvae. Mayotte, with its modest elevation range and land surface, has a notable species richness of mosquitoes with 45 well-documented species belonging to 15 genera. PMID:25004163

Vertical and Horizontal Vegetation Structure across Natural and Modified Habitat Types at Mount Kilimanjaro.

PubMed

Rutten, Gemma; Ensslin, Andreas; Hemp, Andreas; Fischer, Markus

2015-01-01

In most habitats, vegetation provides the main structure of the environment. This complexity can facilitate biodiversity and ecosystem services. Therefore, measures of vegetation structure can serve as indicators in ecosystem management. However, many structural measures are laborious and require expert knowledge. Here, we used consistent and convenient measures to assess vegetation structure over an exceptionally broad elevation gradient of 866-4550 m above sea level at Mount Kilimanjaro, Tanzania. Additionally, we compared (human)-modified habitats, including maize fields, traditionally managed home gardens, grasslands, commercial coffee farms and logged and burned forests with natural habitats along this elevation gradient. We distinguished vertical and horizontal vegetation structure to account for habitat complexity and heterogeneity. Vertical vegetation structure (assessed as number, width and density of vegetation layers, maximum canopy height, leaf area index and vegetation cover) displayed a unimodal elevation pattern, peaking at intermediate elevations in montane forests, whereas horizontal structure (assessed as coefficient of variation of number, width and density of vegetation layers, maximum canopy height, leaf area index and vegetation cover) was lowest at intermediate altitudes. Overall, vertical structure was consistently lower in modified than in natural habitat types, whereas horizontal structure was inconsistently different in modified than in natural habitat types, depending on the specific structural measure and habitat type. Our study shows how vertical and horizontal vegetation structure can be assessed efficiently in various habitat types in tropical mountain regions, and we suggest to apply this as a tool for informing future biodiversity and ecosystem service studies.

Evaluating Cumulative Ecosystem Response to Restoration Projects in the Columbia River Estuary, Annual Report 2007

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, Gary E.; Diefenderfer, Heida L.; Borde, Amy B.

The goal of this multi-year study (2004-2010) is to develop a methodology to evaluate the cumulative effects of multiple habitat restoration projects intended to benefit ecosystems supporting juvenile salmonids in the lower Columbia River and estuary. Literature review in 2004 revealed no existing methods for such an evaluation and suggested that cumulative effects could be additive or synergistic. Field research in 2005, 2006, and 2007 involved intensive, comparative studies paired by habitat type (tidal swamp vs. marsh), trajectory (restoration vs. reference site), and restoration action (tide gate vs. culvert vs. dike breach). The field work established two kinds of monitoringmore » indicators for eventual cumulative effects analysis: core and higher-order indicators. Management implications of limitations and applications of site-specific effectiveness monitoring and cumulative effects analysis were identified.« less

Integrating SAS and GIS software to improve habitat-use estimates from radiotelemetry data

USGS Publications Warehouse

Kenow, K.P.; Wright, R.G.; Samuel, M.D.; Rasmussen, P.W.

2001-01-01

Radiotelemetry has been used commonly to remotely determine habitat use by a variety of wildlife species. However, habitat misclassification can occur because the true location of a radiomarked animal can only be estimated. Analytical methods that provide improved estimates of habitat use from radiotelemetry location data using a subsampling approach have been proposed previously. We developed software, based on these methods, to conduct improved habitat-use analyses. A Statistical Analysis System (SAS)-executable file generates a random subsample of points from the error distribution of an estimated animal location and formats the output into ARC/INFO-compatible coordinate and attribute files. An associated ARC/INFO Arc Macro Language (AML) creates a coverage of the random points, determines the habitat type at each random point from an existing habitat coverage, sums the number of subsample points by habitat type for each location, and outputs tile results in ASCII format. The proportion and precision of habitat types used is calculated from the subsample of points generated for each radiotelemetry location. We illustrate the method and software by analysis of radiotelemetry data for a female wild turkey (Meleagris gallopavo).

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, Gary E.; Diefenderfer, Heida L.; Borde, Amy B.

This is the sixth annual report of a seven-year project (2004 through 2010) to evaluate the cumulative effects of habitat restoration actions in the lower Columbia River and estuary (LCRE). The project, called the Cumulative Effects Study, is being conducted for the U.S. Army Corps of Engineers Portland District (USACE) by the Marine Sciences Laboratory of the Pacific Northwest National Laboratory (PNNL), the Pt. Adams Biological Field Station of the National Marine Fisheries Service (NMFS), the Columbia River Estuary Study Taskforce (CREST), and the University of Washington. The goal of the Cumulative Effects Study is to develop a methodology tomore » evaluate the cumulative effects of multiple habitat restoration projects intended to benefit ecosystems supporting juvenile salmonids in the 235-km-long LCRE. Literature review in 2004 revealed no existing methods for such an evaluation and suggested that cumulative effects could be additive or synergistic. From 2005 through 2009, annual field research involved intensive, comparative studies paired by habitat type (tidal swamp versus marsh), trajectory (restoration versus reference site), and restoration action (tidegate replacement vs. culvert replacement vs. dike breach).« less

Genomes of ubiquitous marine and hypersaline Hydrogenovibrio, Thiomicrorhabdus and Thiomicrospira spp. encode a diversity of mechanisms to sustain chemolithoautotrophy in heterogeneous environments.

PubMed

Scott, Kathleen M; Williams, John; Porter, Cody M B; Russel, Sydney; Harmer, Tara L; Paul, John H; Antonen, Kirsten M; Bridges, Megan K; Camper, Gary J; Campla, Christie K; Casella, Leila G; Chase, Eva; Conrad, James W; Cruz, Mercedez C; Dunlap, Darren S; Duran, Laura; Fahsbender, Elizabeth M; Goldsmith, Dawn B; Keeley, Ryan F; Kondoff, Matthew R; Kussy, Breanna I; Lane, Marannda K; Lawler, Stephanie; Leigh, Brittany A; Lewis, Courtney; Lostal, Lygia M; Marking, Devon; Mancera, Paola A; McClenthan, Evan C; McIntyre, Emily A; Mine, Jessica A; Modi, Swapnil; Moore, Brittney D; Morgan, William A; Nelson, Kaleigh M; Nguyen, Kimmy N; Ogburn, Nicholas; Parrino, David G; Pedapudi, Anangamanjari D; Pelham, Rebecca P; Preece, Amanda M; Rampersad, Elizabeth A; Richardson, Jason C; Rodgers, Christina M; Schaffer, Brent L; Sheridan, Nancy E; Solone, Michael R; Staley, Zachery R; Tabuchi, Maki; Waide, Ramond J; Wanjugi, Pauline W; Young, Suzanne; Clum, Alicia; Daum, Chris; Huntemann, Marcel; Ivanova, Natalia; Kyrpides, Nikos; Mikhailova, Natalia; Palaniappan, Krishnaveni; Pillay, Manoj; Reddy, T B K; Shapiro, Nicole; Stamatis, Dimitrios; Varghese, Neha; Woyke, Tanja; Boden, Rich; Freyermuth, Sharyn K; Kerfeld, Cheryl A

2018-03-09

Chemolithoautotrophic bacteria from the genera Hydrogenovibrio, Thiomicrorhabdus and Thiomicrospira are common, sometimes dominant, isolates from sulfidic habitats including hydrothermal vents, soda and salt lakes and marine sediments. Their genome sequences confirm their membership in a deeply branching clade of the Gammaproteobacteria. Several adaptations to heterogeneous habitats are apparent. Their genomes include large numbers of genes for sensing and responding to their environment (EAL- and GGDEF-domain proteins and methyl-accepting chemotaxis proteins) despite their small sizes (2.1-3.1 Mbp). An array of sulfur-oxidizing complexes are encoded, likely to facilitate these organisms' use of multiple forms of reduced sulfur as electron donors. Hydrogenase genes are present in some taxa, including group 1d and 2b hydrogenases in Hydrogenovibrio marinus and H. thermophilus MA2-6, acquired via horizontal gene transfer. In addition to high-affinity cbb 3 cytochrome c oxidase, some also encode cytochrome bd-type quinol oxidase or ba 3 -type cytochrome c oxidase, which could facilitate growth under different oxygen tensions, or maintain redox balance. Carboxysome operons are present in most, with genes downstream encoding transporters from four evolutionarily distinct families, which may act with the carboxysomes to form CO 2 concentrating mechanisms. These adaptations to habitat variability likely contribute to the cosmopolitan distribution of these organisms. © 2018 Society for Applied Microbiology and John Wiley & Sons Ltd.

Does mixed-species flocking influence how birds respond to a gradient of land-use intensity?

PubMed

Mammides, Christos; Chen, Jin; Goodale, Uromi Manage; Kotagama, Sarath Wimalabandara; Sidhu, Swati; Goodale, Eben

2015-07-22

Conservation biology is increasingly concerned with preserving interactions among species such as mutualisms in landscapes facing anthropogenic change. We investigated how one kind of mutualism, mixed-species bird flocks, influences the way in which birds respond to different habitat types of varying land-use intensity. We use data from a well-replicated, large-scale study in Sri Lanka and the Western Ghats of India, in which flocks were observed inside forest reserves, in 'buffer zones' of degraded forest or timber plantations, and in areas of intensive agriculture. We find flocks affected the responses of birds in three ways: (i) species with high propensity to flock were more sensitive to land use; (ii) different flock types, dominated by different flock leaders, varied in their sensitivity to land use and because following species have distinct preferences for leaders, this can have a cascading effect on followers' habitat selection; and (iii) those forest-interior species that remain outside of forests were found more inside flocks than would be expected by chance, as they may use flocks more in suboptimal habitat. We conclude that designing policies to protect flocks and their leading species may be an effective way to conserve multiple bird species in mixed forest and agricultural landscapes. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

The vegetation of the Grand River/Cedar River, Sioux, and Ashland Districts of the Custer National Forest: a habitat type classification.

Treesearch

Paul L. Hansen; George R. Hoffman

1988-01-01

A vegetation classification was developed, using the methods and concepts of Daubenmire, on the Ashland, Sioux, and Grand River/Cedar River Districts of the Custer National Forest. Of the 26 habitat types delimited and described, eight were steppe, nine shrub-steppe, four woodland, and five forest. Two community types also were described. A key to the habitat types and...

A meta-analysis of zooplankton functional traits influencing ecosystem function.

PubMed

Hébert, Marie-Pier; Beisner, Beatrix E; Maranger, Roxane

2016-04-01

The use of functional traits to characterize community composition has been proposed as a more effective way to link community structure to ecosystem functioning. Organismal morphology, body stoichiometry, and physiology can be readily linked to large-scale ecosystem processes through functional traits that inform on interspecific and species-environment interactions; yet such effect traits are still poorly included in trait-based approaches. Given their key trophic position in aquatic ecosystems, individual zooplankton affect energy fluxes and elemental processing. We compiled a large database of zooplankton traits contributing to carbon, nitrogen, and phosphorus cycling and examined the effect of classification and habitat (marine vs. freshwater) on trait relationships. Respiration and nutrient excretion rates followed mass-dependent scaling in both habitats, with exponents ranging from 0.70 to 0.90. Our analyses revealed surprising differences in allometry and respiration between habitats, with freshwater species having lower length-specific mass and three times higher mass-specific respiration rates. These differences in traits point to implications for ecological strategies as well as overall carbon storage and fluxes based on habitat type. Our synthesis quantifies multiple trait relationships and links organisms to ecosystem processes they influence, enabling a more complete integration of aquatic community ecology and biogeochemistry through the promising use of effect traits.

Impact of habitat type on forage quality of seedling oak leaves in central Wisconsin

Treesearch

Michael Demchik

2014-01-01

The objectives of this study were to determine if relative feed value or crude protein in seedling oak leaves was different between three central Wisconsin habitat type groupings. Seedling oak leaves of two species were collected from oak sites that represented either fully stocked or understocked conditions from three possible habitat type groupings: (1) Acer...

Introduction to the Special Section--Bat Habitat Use in Eastern North American Temperate Forests: Site, Stand, an Landscape Effects

Treesearch

Robert T. Brooks; W. Mark Ford

2006-01-01

Forest bats of eastern North America select habitats for roosting, foraging, and winter hibernation/migration over a myriad of scales. An understanding of forest-bat habitat use over scales of time and space is important for their conservation and management. The papers in this Special Section report studies of bat habitat use across multiple scales from locations...

Advantages of a Modular Mars Surface Habitat Approach

NASA Technical Reports Server (NTRS)

Rucker, Michelle A.; Hoffman, Stephan J.; Andrews, Alida; Watts, Kevin

2018-01-01

Early crewed Mars mission concepts developed by the National Aeronautics and Space Administration (NASA) assumed a single, large habitat would house six crew members for a 500-day Mars surface stay. At the end of the first mission, all surface equipment, including the habitat, -would be abandoned and the process would be repeated at a different Martian landing site. This work was documented in a series of NASA publications culminating with the Mars Design Reference Mission 5.0 (NASA-SP-2009-566). The Evolvable Mars Campaign (EMC) explored whether re-using surface equipment at a single landing site could be more affordable than the Apollo-style explore-abandon-repeat mission cadence. Initial EMC assumptions preserved the single, monolithic habitat, the only difference being a new requirement to reuse the surface habitat for multiple expedition crews. A trade study comparing a single large habitat versus smaller, modular habitats leaned towards the monolithic approach as more mass-efficient. More recent work has focused on the operational aspects of building up Mars surface infrastructure over multiple missions, and has identified compelling advantages of the modular approach that should be considered before making a final decision. This paper explores Mars surface mission operational concepts and integrated system analysis, and presents an argument for the modular habitat approach.

Multiscale connectivity and graph theory highlight critical areas for conservation under climate change.

PubMed

Dilt, Thomas E; Weisberg, Peter J; Leitner, Philip; Matocq, Marjorie D; Inman, Richard D; Nussear, Kenneth E; Esque, Todd C

2016-06-01

Conservation planning and biodiversity management require information on landscape connectivity across a range of spatial scales from individual home ranges to large regions. Reduction in landscape connectivity due changes in land use or development is expected to act synergistically with alterations to habitat mosaic configuration arising from climate change. We illustrate a multiscale connectivity framework to aid habitat conservation prioritization in the context of changing land use and climate. Our approach, which builds upon the strengths of multiple landscape connectivity methods, including graph theory, circuit theory, and least-cost path analysis, is here applied to the conservation planning requirements of the Mohave ground squirrel. The distribution of this threatened Californian species, as for numerous other desert species, overlaps with the proposed placement of several utility-scale renewable energy developments in the American southwest. Our approach uses information derived at three spatial scales to forecast potential changes in habitat connectivity under various scenarios of energy development and climate change. By disentangling the potential effects of habitat loss and fragmentation across multiple scales, we identify priority conservation areas for both core habitat and critical corridor or stepping stone habitats. This approach is a first step toward applying graph theory to analyze habitat connectivity for species with continuously distributed habitat and should be applicable across a broad range of taxa.

Resistance Level of Mosquito Species (Diptera: Culicidae) from Shandong Province, China.

PubMed

Liu, Hong-Mei; Yang, Pei-Pei; Cheng, Peng; Wang, Hai-Fang; Liu, Li-Juan; Huang, Xiaodan; Zhao, Yu-Qiang; Wang, Huai-Wei; Zhang, Chong-Xing; Gong, Mao-Qing

2015-01-01

This study describes the aquatic habitats, species composition, and the insecticide resistance level of the mosquito Culex pipiens pallens in Shandong Province, China. A cross-sectional survey of mosquito larval habitats was conducted from May to November 2014 to determine the species composition and larval abundance. Larvae were collected using the standard dipping technique, and a total of four habitat types were sampled. The fourth instar larvae of Cx. pipiens pallens collected in each habitat type were tested for resistance to five insecticides according to a WHO bioassay. A total of 7,281 mosquito larvae were collected, of which 399 (5.48%) were categorized as Anopheles mosquito larvae (An. sinensis), 6636 (91.14%) as culicine larvae (Cx. pipiens pallens, Cx. tritaeniorhynchus, Cx. halifaxii, and Cx. bitaeniorhynchus), 213 (2.93%) as Armigeres larvae, and 33 (0.45%) as Aedes larvae (Aedes albopictus). In addition, a total of 1,149 mosquito pupae were collected. Culex larvae were distributed in all habitats investigated. Tukeys HSD analysis showed that roadside drainages were the most productive habitat type for Culex larvae. Armigeres species were found only in drains, Aedes only in water tanks, and Anopheles in water that was comparatively clear and rich in emergent plants. Bioassay showed that the maximum resistance level of Cx. pipiens pallens was to deltamethrin, while it was lowest to plifenate. The productivity of various mosquitoes in different habitat types is very heterogeneous. It is particularly important to modify human activity and the environment to achieve effective mosquito vector control. For effective larval control, the type of habitat should be considered, and the most productive habitat type should be given priority in mosquito abatement programs.

Larval mosquito habitat utilization and community dynamics of Aedes albopictus and Aedes japonicus (Diptera: Culicidae).

PubMed

Bartlett-Healy, Kristen; Unlu, Isik; Obenauer, Peter; Hughes, Tony; Healy, Sean; Crepeau, Taryn; Farajollahi, Ary; Kesavaraju, Banu; Fonseca, Dina; Schoeler, George; Gaugler, Randy; Strickman, Daniel

2012-07-01

Aedes albopictus (Skuse) and Ae. japonicus (Theobald) are important container-inhabiting mosquitoes that transmit disease agents, outcompete native species, and continue to expand their range in the United States. Both species deposit eggs in natural and artificial containers and thrive in peridomestic environments. The goal of our study was to examine the types and characteristics of containers that are most productive for these species in the northeastern United States. In total, 306 containers were sampled in urban, suburban, and rural areas of New Jersey. Multiple biotic and abiotic factors were recorded in an attempt to identify variables associated with the productivity of each species. Based on pupal abundance and density of container types, results showed that tires, trash cans, and planter dishes were the most important containers for Ae. albopictus, while planter dishes were the most important containers for Ae. japonicus. Container color (black and gray), material (rubber), and type (tires) were correlated with species presence for Ae. albopictus and Ae. japonicus. These factors may play a role in the selection of oviposition sites by female mosquitoes or in the survival of their progeny. Differences in species composition and abundance were detected between areas classified as urban, suburban, and rural. In urban and suburban areas, Ae. albopictus was more abundant in container habitats than Ae. japonicus; however, Ae. japonicus was more abundant in rural areas, and when water temperatures were below 14 degrees C. Our results suggest many variables can influence the presence of Ae. albopictus and Ae. japonicus in container habitats in northeastern United States.

Migrating birds’ use of stopover habitat in the southwestern United States

USGS Publications Warehouse

Ruth, Janet M.; Diehl, R.H.; Felix, R.K.

2012-01-01

In the arid Southwest, migratory birds are known to use riparian stopover habitats; we know less about how migrants use other habitat types during migratory stopover. Using radar data and satellite land-cover data, we determined the habitats with which birds are associated during migration stopover. Bird densities differed significantly by habitat type at all sites in at least one season. In parts of Arizona and New Mexico upland forest supported high densities of migrants, especially in fall. Developed habitat, in areas with little upland forest, also supported high densities of migrants. Scrub/shrub and grassland habitats supported low to intermediate densities, but because these habitat types dominate the Southwestern landscape, they may provide stopover habitat for larger numbers of migratory birds than previously recognized. These results are complicated by continuing challenges related to target identity (i.e., distinguishing among birds, arthropods and bats). Our results suggest that it is too simplistic to (1) consider the arid West as a largely inhospitable landscape in which there are only relatively small oases of habitat that provide the resources needed by all migrants, (2) think of western riparian and upland forests as supporting the majority of migrants in all cases, and (3) consider a particular habitat unimportant for stopover solely on the basis of low densities of migrants.

Defining biophysical reference conditions for dynamics river systems: an Alaskan example

NASA Astrophysics Data System (ADS)

Pess, G. R.

2008-12-01

Defining reference conditions for dynamic river ecosystems is difficult for two reasons. First long-term, persistent anthropogenic influences such as land development, harvest of biological resources, and invasive species have resulted in degraded, reduced, and simplified ecological communities and associated habitats. Second, river systems that have not been altered through human disturbance rarely have a long-term dataset on ecological conditions. However there are exceptions which can help us define the dynamic nature of river ecosystems. One large-scale exception is the Wood River system in Bristol Bay, Alaska, where habitat and salmon populations have not been altered by anthropogenic influences such as land development, hatchery production, and invasive species. In addition, the one major anthropogenic disturbance, salmon (Oncorhynchus spp.) harvest, has been quantified and regulated since its inception. First, we examined the variation in watershed and stream habitat characteristics across the Wood River system. We then compared these stream habitat characteristics with data that was collected in the 1950s. Lastly, we examined the correlation between pink (Oncorhynchus gorbuscha), chum (O. keta), and Chinook (O. tshawytscha), and sockeye salmon (O. nerka), and habitat characteristics in the Wood River system using four decades of data on salmon. We found that specific habitat attributes such as stream channel wetted width, depth, cover type, and the proportion of spawnable area were similar to data collected in the 1950s. Greater stream habitat variation occurred among streams than over time. Salmon occurrence and abundance, however was more temporal and spatially variable. The occurrence of pink and chum salmon increased from the 1970's to the present in the Wood River system, while sockeye abundance has fluctuated with changes in ocean conditions. Pink, Chinook and chum salmon ranged from non-existent to episodic to abundantly perennial, while sockeye dominated all streams in the Wood River system. One main trend was the frequency of occurrence and abundance of pink, Chinook, and chum salmon increased with watershed drainage area and stream depth and, to a lesser extent, decreased with sockeye salmon density. Conversely, sockeye salmon densities decreased with watershed drainage area and stream depth. Wood river habitat was temporally stable and spatially variable, thus identifying the suite of stream channel types that occur and identifying reference states for each is critical to capture reference conditions. Wood River biological reference states need to be established over a longer time frame than physical attributes because of the large-scale temporal variability that is forced by climatic conditions and larger scale spatially- explicit trends. Thus biological reference states for the Wood River system need to be defined with multiple streams, similar to developing reference states for different stream channel types, in order to capture the range of biological variability.

Modeling critical habitat for Flammulated Owls (Otus flammeolus)

Treesearch

David A. Christie; Astrid M. van Woudenberg

1997-01-01

Multiple logistic regression analysis was used to produce a prediction model for Flammulated Owl (Otus flammeolus) breeding habitat within the Kamloops Forest Region in south-central British Columbia. Using the model equation, a pilot habitat prediction map was created within a Geographic Information System (GIS) environment that had a 75.7 percent...

Landscape-based population viability models demonstrate importance of strategic conservation planning for birds

Treesearch

Thomas W. Bonnot; Frank R. Thompson; Joshua J. Millspaugh; D. Todd Jones-Farland

2013-01-01

Efforts to conserve regional biodiversity in the face of global climate change, habitat loss and fragmentation will depend on approaches that consider population processes at multiple scales. By combining habitat and demographic modeling, landscape-based population viability models effectively relate small-scale habitat and landscape patterns to regional population...

Location, location, location: finding a suitable home among the noise

PubMed Central

Stanley, Jenni A.; Radford, Craig A.; Jeffs, Andrew G.

2012-01-01

While sound is a useful cue for guiding the onshore orientation of larvae because it travels long distances underwater, it also has the potential to convey valuable information about the quality and type of the habitat at the source. Here, we provide, to our knowledge, the first evidence that settlement-stage coastal crab species can interpret and show a strong settlement and metamorphosis response to habitat-related differences in natural underwater sound. Laboratory- and field-based experiments demonstrated that time to metamorphosis in the settlement-stage larvae of common coastal crab species varied in response to different underwater sound signatures produced by different habitat types. The megalopae of five species of both temperate and tropical crabs showed a significant decrease in time to metamorphosis, when exposed to sound from their optimal settlement habitat type compared with other habitat types. These results indicate that sounds emanating from specific underwater habitats may play a major role in determining spatial patterns of recruitment in coastal crab species. PMID:22673354

Modeling the impact of hydromorphological alterations by dams and channelization on fish habitat.

NASA Astrophysics Data System (ADS)

Parasiewicz, Piotr; Suska, Katarzyna

2017-04-01

As a consequence of introduction of Water Framework Directive it has been discovered that hydromorphological pressures are one of the main causes of impact on aquatic fauna. However, the impact may vary depending on river type and fish community. To test this hypothesis, we modelled alterations of fish habitat on 6 river sections across Poland using MesoHABSIM approach. The original models of habitat for Target Fish Community were based on repeated field surveys in reference river sections, classified into four fish-ecological classes. Introducing to the models three hydromorphological modification types (damming, channelization and dredging) changed persistent habitat availability for the fish community. The change was measured with Habitat Stress Days Alteration index. Overall the modifications caused increase of habitat stress days, but impact varied depending on season, hydromorphologic river type and expected fish community.

Resource distributions among habitats determine solitary bee offspring production in a mosaic landscape.

PubMed

Williams, Neal M; Kremen, Claire

2007-04-01

Within mosaic landscapes, many organisms depend on attributes of the environment that operate over scales ranging from a single habitat patch to the entire landscape. One such attribute is resource distribution. Organisms' reliance on resources from within a local patch vs. those found among habitats throughout the landscape will depend on local habitat quality, patch quality, and landscape composition. The ability of individuals to move among complementary habitat types to obtain various resources may be a critical mechanism underlying the dynamics of animal populations and ultimately the level of biodiversity at different spatial scales. We examined the effects that local habitat type and landscape composition had on offspring production and survival of the solitary bee Osmia lignaria in an agri-natural landscape in California (U.S.A.). Female bees were placed on farms that did not use pesticides (organic farms), on farms that did use pesticides (conventional farms), or in seminatural riparian habitats. We identified pollens collected by bees nesting in different habitat types and matched these to pollens of flowering plants from throughout the landscape. These data enabled us to determine the importance of different plant species and habitat types in providing food for offspring, and how this importance changed with landscape and local nesting-site characteristics. We found that increasing isolation from natural habitat significantly decreased offspring production and survival for bees nesting at conventional farms, had weaker effects on bees in patches of seminatural habitat, and had little impact on those at organic farm sites. Pollen sampled from nests showed that females nesting in both farm and seminatural habitats relied on pollen from principally native plant species growing in seminatural habitat. Thus connectivity among habitats was critical for offspring production. Females nesting on organic farms were buffered to isolation effects by switching to floral resources growing at the farm site when seminatural areas were too distant. Overall local habitat conditions (farm management practices) can help bolster pollinators, but maintaining functional connectivity among habitats will likely be critical for persistence of pollinator populations as natural habitats are increasingly fragmented by human activities.

Effects of spatial habitat heterogeneity on habitat selection and annual fecundity for a migratory forest songbird

USGS Publications Warehouse

Cornell, K.L.; Donovan, T.M.

2010-01-01

Understanding how spatial habitat patterns influence abundance and dynamics of animal populations is a primary goal in landscape ecology. We used an information-theoretic approach to investigate the association between habitat patterns at multiple spatial scales and demographic patterns for black-throated blue warblers (Dendroica caerulescens) at 20 study sites in west-central Vermont, USA from 2002 to 2005. Sites were characterized by: (1) territory-scale shrub density, (2) patch-scale shrub density occurring within 25 ha of territories, and (3) landscape-scale habitat patterns occurring within 5 km radius extents of territories. We considered multiple population parameters including abundance, age ratios, and annual fecundity. Territory-scale shrub density was most important for determining abundance and age ratios, but landscape-scale habitat structure strongly influenced reproductive output. Sites with higher territory-scale shrub density had higher abundance, and were more likely to be occupied by older, more experienced individuals compared to sites with lower shrub density. However, annual fecundity was higher on sites located in contiguously forested landscapes where shrub density was lower than the fragmented sites. Further, effects of habitat pattern at one spatial scale depended on habitat conditions at different scales. For example, abundance increased with increasing territory-scale shrub density, but this effect was much stronger in fragmented landscapes than in contiguously forested landscapes. These results suggest that habitat pattern at different spatial scales affect demographic parameters in different ways, and that effects of habitat patterns at one spatial scale depends on habitat conditions at other scales. ?? Springer Science+Business Media B.V. 2009.

Vertical and Horizontal Vegetation Structure across Natural and Modified Habitat Types at Mount Kilimanjaro

PubMed Central

Rutten, Gemma; Ensslin, Andreas; Hemp, Andreas; Fischer, Markus

2015-01-01

In most habitats, vegetation provides the main structure of the environment. This complexity can facilitate biodiversity and ecosystem services. Therefore, measures of vegetation structure can serve as indicators in ecosystem management. However, many structural measures are laborious and require expert knowledge. Here, we used consistent and convenient measures to assess vegetation structure over an exceptionally broad elevation gradient of 866–4550m above sea level at Mount Kilimanjaro, Tanzania. Additionally, we compared (human)-modified habitats, including maize fields, traditionally managed home gardens, grasslands, commercial coffee farms and logged and burned forests with natural habitats along this elevation gradient. We distinguished vertical and horizontal vegetation structure to account for habitat complexity and heterogeneity. Vertical vegetation structure (assessed as number, width and density of vegetation layers, maximum canopy height, leaf area index and vegetation cover) displayed a unimodal elevation pattern, peaking at intermediate elevations in montane forests, whereas horizontal structure (assessed as coefficient of variation of number, width and density of vegetation layers, maximum canopy height, leaf area index and vegetation cover) was lowest at intermediate altitudes. Overall, vertical structure was consistently lower in modified than in natural habitat types, whereas horizontal structure was inconsistently different in modified than in natural habitat types, depending on the specific structural measure and habitat type. Our study shows how vertical and horizontal vegetation structure can be assessed efficiently in various habitat types in tropical mountain regions, and we suggest to apply this as a tool for informing future biodiversity and ecosystem service studies. PMID:26406985

Teaching animal habitat selection using wildlife tracking equipment

USGS Publications Warehouse

Laskowski, Jessica; Gillespie, Caitlyn R.; Corral, Lucia; Oden, Amy; Fricke, Kent A.; Fontaine, Joseph J.

2016-01-01

We present a hands-on outdoor activity coupled with classroom discussion to teach students about wildlife habitat selection, the process by which animals choose where to live. By selecting locations or habitats with many benefits (e.g., food, shelter, mates) and few costs (e.g., predators), animals improve their ability to survive and reproduce. Biologists track animal movement using radio telemetry technology to study habitat selection so they can better provide species with habitats that promote population growth. We present a curriculum in which students locate “animals” (transmitters) using radio telemetry equipment and apply math skills (use of fractions and percentages) to assess their “animal's” habitat selection by comparing the availability of habitat types with the proportion of “animals” they find in each habitat type.

Modeling the Effects of Connecting Side Channels to the Long Tom River, Oregon

NASA Astrophysics Data System (ADS)

Appleby, C.; McDowell, P. F.

2015-12-01

The lower Long Tom River is a heavily managed, highly modified stream in the southwestern Willamette Valley with many opportunities for habitat improvements and river restoration. In the 1940s and 1950s, the US Army Corps of Engineers dramatically altered this river system by constructing the Fern Ridge Dam and three, large drop structures, converting the River from a highly sinuous channel to a straight, channelized stream that is interrupted by these grade control structures, and removed the majority of the riparian vegetation. As a result, juvenile spring Chinook salmon are no longer found in the Watershed and the local population of coastal cutthroat trout face limited aquatic habitat. When the river was channelized, long sections of the historical channel were left abandoned on the floodplain. Reconnecting these historical channels as side channels may improve the quality and quantity of aquatic habitat and could allow fish passage around current barriers. However, such construction may also lead to undesirable threats to infrastructure and farmland. This study uses multiple HEC-RAS models to determine the impact of reconnecting two historical channels to the lower Long Tom River by quantifying the change in area of flood inundation and identifying infrastructure in jeapordy given current and post-restoration conditions for 1.5, 5, 10, and 25-year flood discharges. Bathymetric data from ADCP and RTK-GPS surveys has been combined with LiDAR-derived topographic data to create continuous elevation models. Several types of side channel connections are modeled in order to determine which type of connection will result in both the greatest quantity of accessible habitat and the fewest threats to public and private property. In the future, this study will also consider the change in the quantity of physical salmonid habitat and map the areas prone to sedimentation and erosion using CEASAR and PHABSIM tools.

50 CFR 600.815 - Contents of Fishery Management Plans.

Code of Federal Regulations, 2012 CFR

2012-10-01

... stage. (2) Level 2: Habitat-related densities of the species are available. At this level, quantitative... activities. Additionally, the evaluation should consider the establishment of research closure areas or other... the habitat type. (iv) The rarity of the habitat type. (9) Research and information needs. Each FMP...

50 CFR 600.815 - Contents of Fishery Management Plans.

Code of Federal Regulations, 2011 CFR

2011-10-01

... stage. (2) Level 2: Habitat-related densities of the species are available. At this level, quantitative... activities. Additionally, the evaluation should consider the establishment of research closure areas or other... the habitat type. (iv) The rarity of the habitat type. (9) Research and information needs. Each FMP...

50 CFR 600.815 - Contents of Fishery Management Plans.

Code of Federal Regulations, 2014 CFR

2014-10-01

... stage. (2) Level 2: Habitat-related densities of the species are available. At this level, quantitative... activities. Additionally, the evaluation should consider the establishment of research closure areas or other... the habitat type. (iv) The rarity of the habitat type. (9) Research and information needs. Each FMP...

50 CFR 600.815 - Contents of Fishery Management Plans.

Code of Federal Regulations, 2013 CFR

2013-10-01

... stage. (2) Level 2: Habitat-related densities of the species are available. At this level, quantitative... activities. Additionally, the evaluation should consider the establishment of research closure areas or other... the habitat type. (iv) The rarity of the habitat type. (9) Research and information needs. Each FMP...

50 CFR 600.815 - Contents of Fishery Management Plans.

Code of Federal Regulations, 2010 CFR

2010-10-01

... stage. (2) Level 2: Habitat-related densities of the species are available. At this level, quantitative... activities. Additionally, the evaluation should consider the establishment of research closure areas or other... the habitat type. (iv) The rarity of the habitat type. (9) Research and information needs. Each FMP...

Development and evaluation of habitat models for herpetofauna and small mammals

Treesearch

William M. Block; Michael L. Morrison; Peter E. Scott

1998-01-01

We evaluated the ability of discriminant analysis (DA), logistic regression (LR), and multiple regression (MR) to describe habitat use by amphibians, reptiles, and small mammals found in California oak woodlands. We also compared models derived from pitfall and live trapping data for several species. Habitat relations modeled by DA and LR produced similar results,...

Influence of wood on invertebrate communities in streams and rivers

Treesearch

Arthur Benke; J. Bruce Wallace

2010-01-01

Wood plays a major role in creating multiple invertebrate habitats in small streams and large rivers. In small streams, wood debris dams are instrumental in creating a step and pool profile of habitats, enhancing habitat heterogeneity, retaining organic matter, and changing current velocity. Beavers can convert sections of free-flowing streams into ponds and wetlands...

Multi scale habitat relationships of Martes americana in northern Idaho, U.S.A.

Treesearch

Tzeidle N. Wasserman; Samuel A. Cushman; David O. Wallin; Jim Hayden

2012-01-01

We used bivariate scaling and logistic regression to investigate multiple-scale habitat selection by American marten (Martes americana). Bivariate scaling reveals dramatic differences in the apparent nature and strength of relationships between marten occupancy and a number of habitat variables across a range of spatial scales. These differences include reversals in...

Multiple-scale roost habitat comparisons of female Merriam's wild turkeys in the southern Black Hills, South Dakota

Treesearch

Daniel J. Thompson; Mark A. Rumble; Lester D. Flake; Chad P. Lehman

2009-01-01

Because quantity and quality of roosting habitat can affect Merriam's Wild Turkey (Meleagris gallopavo merriami) distribution, we described habitat characteristics of Merriam's turkey roost sites in the southern Black Hills of South Dakota. Varying proportions of Merriam's turkeys in the southern Black Hills depended on supplemental feed from livestock...

Effects of land use on arbuscular mycorrhizal fungal communities in Estonia.

PubMed

Sepp, Siim-Kaarel; Jairus, Teele; Vasar, Martti; Zobel, Martin; Öpik, Maarja

2018-04-01

Arbuscular mycorrhizal (AM) fungal communities vary across habitat types, as well as across different land use types. Most relevant research, however, has focused on agricultural or other severely human-impacted ecosystems. Here, we compared AM fungal communities across six habitat types: calcareous grassland, overgrown ungrazed calcareous grassland, wooded meadow, farmyard lawn, boreonemoral forest, and boreonemoral forest clear-cut, exhibiting contrasting modes of land use. AM fungi in the roots of a single host plant species, Prunella vulgaris, and in its rhizosphere soil were identified using 454-sequencing from a total of 103 samples from 12 sites in Estonia. Mean AM fungal taxon richness per sample did not differ among habitats. AM fungal community composition, however, was significantly different among habitat types. Both abandonment and land use intensification (clearcutting; trampling combined with frequent mowing) changed AM fungal community composition. The AM fungal communities in different habitat types were most similar in the roots of the single host plant species and most distinct in soil samples, suggesting a non-random pattern in host-fungal taxon interactions. The results show that AM fungal taxon composition is driven by habitat type and land use intensity, while the plant host may act as an additional filter between the available and realized AM fungal species pool.

Greater shrub dominance alters breeding habitat and food resources for migratory songbirds in Alaskan arctic tundra.

PubMed

Boelman, Natalie T; Gough, Laura; Wingfield, John; Goetz, Scott; Asmus, Ashley; Chmura, Helen E; Krause, Jesse S; Perez, Jonathan H; Sweet, Shannan K; Guay, Kevin C

2015-04-01

Climate warming is affecting the Arctic in multiple ways, including via increased dominance of deciduous shrubs. Although many studies have focused on how this vegetation shift is altering nutrient cycling and energy balance, few have explicitly considered effects on tundra fauna, such as the millions of migratory songbirds that breed in northern regions every year. To understand how increasing deciduous shrub dominance may alter breeding songbird habitat, we quantified vegetation and arthropod community characteristics in both graminoid and shrub dominated tundra. We combined measurements of preferred nest site characteristics for Lapland longspurs (Calcarius lapponicus) and Gambel's White-crowned sparrows (Zonotrichia leucophrys gambelii) with modeled predictions for the distribution of plant community types in the Alaskan arctic foothills region for the year 2050. Lapland longspur nests were found in sedge-dominated tussock tundra where shrub height does not exceed 20 cm, whereas White-crowned sparrows nested only under shrubs between 20 cm and 1 m in height, with no preference for shrub species. Shrub canopies had higher canopy-dwelling arthropod availability (i.e. small flies and spiders) but lower ground-dwelling arthropod availability (i.e. large spiders and beetles). Since flies are the birds' preferred prey, increasing shrubs may result in a net enhancement in preferred prey availability. Acknowledging the coarse resolution of existing tundra vegetation models, we predict that by 2050 there will be a northward shift in current White-crowned sparrow habitat range and a 20-60% increase in their preferred habitat extent, while Lapland longspur habitat extent will be equivalently reduced. Our findings can be used to make first approximations of future habitat change for species with similar nesting requirements. However, we contend that as exemplified by this study's findings, existing tundra modeling tools cannot yet simulate the fine-scale habitat characteristics that are critical to accurately predicting future habitat extent for many wildlife species. © 2014 John Wiley & Sons Ltd.

Models of regional habitat quality and connectivity for pumas (Puma concolor) in the southwestern United States.

PubMed

Dickson, Brett G; Roemer, Gary W; McRae, Brad H; Rundall, Jill M

2013-01-01

The impact of landscape changes on the quality and connectivity of habitats for multiple wildlife species is of global conservation concern. In the southwestern United States, pumas (Puma concolor) are a well distributed and wide-ranging large carnivore that are sensitive to loss of habitat and to the disruption of pathways that connect their populations. We used an expert-based approach to define and derive variables hypothesized to influence the quality, location, and permeability of habitat for pumas within an area encompassing the entire states of Arizona and New Mexico. Survey results indicated that the presence of woodland and forest cover types, rugged terrain, and canyon bottom and ridgeline topography were expected to be important predictors of both high quality habitat and heightened permeability. As road density, distance to water, or human population density increased, the quality and permeability of habitats were predicted to decline. Using these results, we identified 67 high quality patches across the study area, and applied concepts from electronic circuit theory to estimate regional patterns of connectivity among these patches. Maps of current flow among individual pairs of patches highlighted possible pinch points along two major interstate highways. Current flow summed across all pairs of patches highlighted areas important for keeping the entire network connected, regardless of patch size. Cumulative current flow was highest in Arizona north of the Colorado River and around Grand Canyon National Park, and in the Sky Islands region owing to the many small habitat patches present. Our outputs present a first approximation of habitat quality and connectivity for dispersing pumas in the southwestern United States. Map results can be used to help target finer-scaled analyses in support of planning efforts concerned with the maintenance of puma metapopulation structure, as well as the protection of landscape features that facilitate the dispersal process.

Models of Regional Habitat Quality and Connectivity for Pumas (Puma concolor) in the Southwestern United States

PubMed Central

Dickson, Brett G.; Roemer, Gary W.; McRae, Brad H.; Rundall, Jill M.

2013-01-01

The impact of landscape changes on the quality and connectivity of habitats for multiple wildlife species is of global conservation concern. In the southwestern United States, pumas (Puma concolor) are a well distributed and wide-ranging large carnivore that are sensitive to loss of habitat and to the disruption of pathways that connect their populations. We used an expert-based approach to define and derive variables hypothesized to influence the quality, location, and permeability of habitat for pumas within an area encompassing the entire states of Arizona and New Mexico. Survey results indicated that the presence of woodland and forest cover types, rugged terrain, and canyon bottom and ridgeline topography were expected to be important predictors of both high quality habitat and heightened permeability. As road density, distance to water, or human population density increased, the quality and permeability of habitats were predicted to decline. Using these results, we identified 67 high quality patches across the study area, and applied concepts from electronic circuit theory to estimate regional patterns of connectivity among these patches. Maps of current flow among individual pairs of patches highlighted possible pinch points along two major interstate highways. Current flow summed across all pairs of patches highlighted areas important for keeping the entire network connected, regardless of patch size. Cumulative current flow was highest in Arizona north of the Colorado River and around Grand Canyon National Park, and in the Sky Islands region owing to the many small habitat patches present. Our outputs present a first approximation of habitat quality and connectivity for dispersing pumas in the southwestern United States. Map results can be used to help target finer-scaled analyses in support of planning efforts concerned with the maintenance of puma metapopulation structure, as well as the protection of landscape features that facilitate the dispersal process. PMID:24367495

DOE Office of Scientific and Technical Information (OSTI.GOV)

LaGory, K. E.; Walston, L. J.; Goulet, C

The decline of many snake populations is attributable to habitat loss, and knowledge of habitat use is critical to their conservation. Resource characteristics (e.g., relative availability of different habitat types, soils, and slopes) within a landscape are scale-dependent and may not be equal across multiple spatial scales. Thus, it is important to identify the relevant spatial scales at which resource selection occurs. We conducted a radiotelemetry study of eastern hognose snake (Heterodon platirhinos) home range size and resource use at different hierarchical spatial scales. We present the results for 8 snakes radiotracked during a 2-year study at New Boston Airmore » Force Station (NBAFS) in southern New Hampshire, USA, where the species is listed by the state as endangered. Mean home range size (minimum convex polygon) at NBAFS (51.7 {+-} 14.7 ha) was similar to that reported in other parts of the species range. Radiotracked snakes exhibited different patterns of resource use at different spatial scales. At the landscape scale (selection of locations within the landscape), snakes overutilized old-field and forest edge habitats and underutilized forested habitats and wetlands relative to availability. At this scale, snakes also overutilized areas containing sandy loam soils and areas with lower slope (mean slope = 5.2% at snake locations vs. 6.7% at random locations). We failed to detect some of these patterns of resource use at the home range scale (i.e., within the home range). Our ability to detect resource selection by the snakes only at the landscape scale is likely the result of greater heterogeneity in macrohabitat features at the broader landscape scale. From a management perspective, future studies of habitat selection for rare species should include measurement of available habitat at spatial scales larger than the home range. We suggest that the maintenance of open early successional habitats as a component of forested landscapes will be critical for the persistence of eastern hognose snake populations in the northeastern United States.« less

The relative influence of habitat amount and configuration on genetic structure across multiple spatial scales

PubMed Central

Millette, Katie L; Keyghobadi, Nusha

2015-01-01

Despite strong interest in understanding how habitat spatial structure shapes the genetics of populations, the relative importance of habitat amount and configuration for patterns of genetic differentiation remains largely unexplored in empirical systems. In this study, we evaluate the relative influence of, and interactions among, the amount of habitat and aspects of its spatial configuration on genetic differentiation in the pitcher plant midge, Metriocnemus knabi. Larvae of this species are found exclusively within the water-filled leaves of pitcher plants (Sarracenia purpurea) in a system that is naturally patchy at multiple spatial scales (i.e., leaf, plant, cluster, peatland). Using generalized linear mixed models and multimodel inference, we estimated effects of the amount of habitat, patch size, interpatch distance, and patch isolation, measured at different spatial scales, on genetic differentiation (FST) among larval samples from leaves within plants, plants within clusters, and clusters within peatlands. Among leaves and plants, genetic differentiation appears to be driven by female oviposition behaviors and is influenced by habitat isolation at a broad (peatland) scale. Among clusters, gene flow is spatially restricted and aspects of both the amount of habitat and configuration at the focal scale are important, as is their interaction. Our results suggest that both habitat amount and configuration can be important determinants of genetic structure and that their relative influence is scale dependent. PMID:25628865

The relative influence of habitat amount and configuration on genetic structure across multiple spatial scales.

PubMed

Millette, Katie L; Keyghobadi, Nusha

2015-01-01

Despite strong interest in understanding how habitat spatial structure shapes the genetics of populations, the relative importance of habitat amount and configuration for patterns of genetic differentiation remains largely unexplored in empirical systems. In this study, we evaluate the relative influence of, and interactions among, the amount of habitat and aspects of its spatial configuration on genetic differentiation in the pitcher plant midge, Metriocnemus knabi. Larvae of this species are found exclusively within the water-filled leaves of pitcher plants (Sarracenia purpurea) in a system that is naturally patchy at multiple spatial scales (i.e., leaf, plant, cluster, peatland). Using generalized linear mixed models and multimodel inference, we estimated effects of the amount of habitat, patch size, interpatch distance, and patch isolation, measured at different spatial scales, on genetic differentiation (F ST) among larval samples from leaves within plants, plants within clusters, and clusters within peatlands. Among leaves and plants, genetic differentiation appears to be driven by female oviposition behaviors and is influenced by habitat isolation at a broad (peatland) scale. Among clusters, gene flow is spatially restricted and aspects of both the amount of habitat and configuration at the focal scale are important, as is their interaction. Our results suggest that both habitat amount and configuration can be important determinants of genetic structure and that their relative influence is scale dependent.

Multi-scale connectivity and graph theory highlight critical areas for conservation under climate change

USGS Publications Warehouse

Dilts, Thomas E.; Weisberg, Peter J.; Leitner, Phillip; Matocq, Marjorie D.; Inman, Richard D.; Nussear, Ken E.; Esque, Todd C.

2016-01-01

Conservation planning and biodiversity management require information on landscape connectivity across a range of spatial scales from individual home ranges to large regions. Reduction in landscape connectivity due changes in land-use or development is expected to act synergistically with alterations to habitat mosaic configuration arising from climate change. We illustrate a multi-scale connectivity framework to aid habitat conservation prioritization in the context of changing land use and climate. Our approach, which builds upon the strengths of multiple landscape connectivity methods including graph theory, circuit theory and least-cost path analysis, is here applied to the conservation planning requirements of the Mohave ground squirrel. The distribution of this California threatened species, as for numerous other desert species, overlaps with the proposed placement of several utility-scale renewable energy developments in the American Southwest. Our approach uses information derived at three spatial scales to forecast potential changes in habitat connectivity under various scenarios of energy development and climate change. By disentangling the potential effects of habitat loss and fragmentation across multiple scales, we identify priority conservation areas for both core habitat and critical corridor or stepping stone habitats. This approach is a first step toward applying graph theory to analyze habitat connectivity for species with continuously-distributed habitat, and should be applicable across a broad range of taxa.

An analytical platform for cumulative impact assessment based on multiple futures: the impact of petroleum drilling and forest harvesting on moose (Alces alces) and marten (Martes americana) habitats in northeastern British Columbia.

PubMed

Strimbu, Bogdan; Innes, John

2011-07-01

The combined influence on the environment of all projects occurring in a single area is evaluated through cumulative impact assessments (CIA), which consider the consequences of multiple projects, each insignificant on its own, yet important when evaluated collectively. Traditionally, future human activities are included in CIA using an analytical platform, commonly based on complex models that supply precise predictions but with reduced accuracy. To compensate for the lack of accuracy in current CIA approaches, we propose a shift in the paradigm governing CIA. The paradigm shift involves a change in the focus of CIA investigations from the detailed analysis of one unlikely future to the identification of the patterns describing multiple potential future changes in the environment. To illustrate the approach, a set of 144 possible and equally likely futures were developed that aimed to identify the potential impacts of forest harvesting and petroleum drilling on the habitat suitability of moose and marten in northeast British Columbia, Canada. The evolution of two measures of habitat suitability (average habitat suitability index and surface of the stands with habitat suitability index >0.5) revealed that the human activities could induce cycles in the habitat dynamics of moose and marten. The planning period of 100 years was separated into three distinct periods following a sinusoidal pattern (i.e., increase - constant - decrease in the habitat suitability measures). The attributes that could induce significant changes in the assessment of environment are the choice of harvesting age and species. Copyright © 2011 Elsevier Ltd. All rights reserved.

Candida spencermartinsiae sp. nov., Candida taylorii sp. nov. and Pseudozyma abaconensis sp. nov., novel yeasts from mangrove and coral reef ecosystems.

PubMed

Statzell-Tallman, Adele; Scorzetti, Gloria; Fell, Jack W

2010-08-01

Three species of yeasts are taxonomically described for strains isolated from marine environments. Candida spencermartinsiae sp. nov. (type strain CBS 10894T =NRRL Y-48663T) and Candida taylorii sp. nov. (type strain CBS 8508T =NRRL Y-27213T) are anamorphic ascomycetous yeasts in a phylogenetic cluster of marine yeasts in the Debaryomyces/Lodderomyces clade of the Saccharomycetales. The two species were isolated from multiple locations among coral reefs and mangrove habitats. Pseudozyma abaconensis sp. nov. (type strain CBS 8380T =NRRL Y-17380T) is an anamorphic basidiomycete that is related to the smut fungi of the genus Ustilago in the Ustilaginales. P. abaconensis was collected from waters adjacent to a coral reef.

Habitat Evaluation Procedures (HEP) Report Wanaket Wildlife Area, Techical Report 2005-2006.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ashley, Paul

2006-02-01

The Regional HEP Team (RHT) and Confederated Tribes of the Umatilla Indian Reservation (CTUIR) Wildlife Program staff conducted a follow-up habitat evaluation procedures (HEP) analysis on the Wanaket Wildlife Management Area in June 2005. The 2005 HEP investigation generated 3,084.48 habitat units (HUs) for a net increase of 752.18 HUs above 1990/1995 baseline survey results. The HU to acre ratio also increased from 0.84:1.0 to 1.16:1.0. The largest increase in habitat units occurred in the shrubsteppe/grassland cover type (California quail and western meadowlark models), which increased from 1,544 HUs to 2,777 HUs (+43%), while agriculture cover type HUs were eliminatedmore » because agricultural lands (managed pasture) were converted to shrubsteppe/grassland. In addition to the agriculture cover type, major changes in habitat structure occurred in the shrubsteppe/grassland cover type due to the 2001 wildfire which removed the shrub component from well over 95% of its former range. The number of acres of all other cover types remained relatively stable; however, habitat quality improved in the riparian herb and riparian shrub cover types. The number and type of HEP species models used during the 2005 HEP analysis were identical to those used in the 1990/1995 baseline HEP surveys. The number of species models employed to evaluate the shrubsteppe/grassland, sand/gravel/mud/cobble, and riparian herb cover types, however, were fewer than reported in the McNary Dam Loss Assessment (Rassmussen and Wright 1989) for the same cover types.« less

Establishing the Role of Digital Repeat Photography in Understanding Phenology and Carbon Cycling in a Subarctic Peatland

NASA Astrophysics Data System (ADS)

Garnello, Anthony John

In this thesis, I establish and explore the role of phenology in understanding the rapidly changing environment of a subarctic peatland. First, I demonstrate how digital repeat photography can be used to characterize and differentiate distinct plant communities using two years of images. Each habitat is composed of different plant functional groups, promoting the individualistic approach to characterization that near-earth remote sensing tools can provide. The camera-product Relative Greenness successfully characterized interannual variability in seasonal growth for each habitat type. Across habitats, there was a direct relationship between advancement of spring onset and active season growth though this overall pattern showed habitat-specific variance. The camera images were also useful in characterizing the flowering phenology of an eriophorum-rich fen habitat, for which a metric named Intensity was created. These results suggest that employment of phenology cameras in highly heterogeneous subarctic environments is a robust method to characterize phenology on a habitat to species scale. Next, I explored the role that this phenology product has in modeling Net Ecosystem Exchange (NEE) also measured at the field site. I hypothesized that the explanatory power of the phenology index, which is conceptually tied to a measure of photosynthetic capacity, would be tightly linked to the timescale it was used for: At sub-daily timescales, environmental forces would dominate, though when averaged over days to weekly scales, the biology represented through the camera index would be more influential. I show that at multiple time scales the environmental factors outperform the camera index when modeling NEE. Together, these studies begin to explore the applicability of phenology camera systems in subarctic environments.

The effect of habitat disturbance on the abundance of nocturnal lemur species on the Masoala Peninsula, northeastern Madagascar.

PubMed

Sawyer, Rachel Mary; Fenosoa, Zo Samuel Ella; Andrianarimisa, Aristide; Donati, Giuseppe

2017-01-01

Madagascar is one of the world's biodiversity hotspots. The island's past and current rates of deforestation and habitat disturbance threaten its plethora of endemic biodiversity. On Madagascar, tavy (slash and burn agriculture), land conversion for rice cultivation, illegal hardwood logging and bushmeat hunting are the major contributors to habitat disturbance. Understanding species-specific responses to habitat disturbance across different habitat types is crucial when designing conservation strategies. We surveyed three nocturnal lemur species in four forest types of varying habitat disturbance on the Masoala Peninsula, northeastern Madagascar. We present here updated abundance and density estimates for the Endangered Avahi mooreorum and Lepilemur scottorum, and Microcebus sp. Distance sampling surveys were conducted on 11 transects, covering a total of 33 km after repeated transect walks. We collected data on tree height, bole height, diameter at breast height, canopy cover and tree density using point-quarter sampling to characterise the four forest types (primary lowland, primary littoral, selectively logged and agricultural mosaic). Median encounter rates by forest type ranged from 1 to 1.5 individuals (ind.)/km (Microcebus sp.), 0-1 ind./km (A. mooreorum) and 0-1 ind./km (L. scottorum). Species density estimates were calculated at 232.31 ind./km 2 (Microcebus sp.) and 121.21 ind./km 2 (A. mooreorum), while no density estimate is provided for L. scottorum due to a small sample size. Microcebus sp. was most tolerant to habitat disturbance, exhibiting no significant effect of forest type on abundance. Its small body size, omnivorous diet and generalised locomotion appear to allow it to tolerate a variety of habitat disturbance. Both A. mooreorum and L. scottorum showed significant effects of forest type on their respective abundance. This study suggests that the specialist locomotion and diet of A. mooreorum and L. scottorum make them susceptible to the effects of increasing habitat disturbance.

Estimating habitat value using forest inventory data: the fisher (Martes pennanti) in northwestern California

Treesearch

William J. Zielinski; Jeffrey R. Dunk; Andrew N. Gray

2012-01-01

Managing forests for multiple objectives requires balancing timber and vegetation management objectives with needs of sensitive species. Especially challenging is how to retain the habitat elements for species that are typically associated with late-seral forests. We develop a regionally specific, multivariate model describing habitat selection that can be used – when...

Wildlife Habitats in Managed Forests the Blue Mountains of Oregon and Washington

Treesearch

Jack Ward [Technical Editor] Thomas

1979-01-01

The Nation's forests are one of the last remaining natural habitats forterrestrial wildlife. Much of this vast forest resource has changed dramatically in the last 200 years and can no longer be considered wild. It is now managed for multiple use benefits, including timber production. Timber harvesting and roadbuilding now alter wildlife habitat more than any...

Application of Bayesian methods to habitat selection modeling of the northern spotted owl in California: new statistical methods for wildlife research

Treesearch

Howard B. Stauffer; Cynthia J. Zabel; Jeffrey R. Dunk

2005-01-01

We compared a set of competing logistic regression habitat selection models for Northern Spotted Owls (Strix occidentalis caurina) in California. The habitat selection models were estimated, compared, evaluated, and tested using multiple sample datasets collected on federal forestlands in northern California. We used Bayesian methods in interpreting...

Correlated factors in amphibian decline: Exotic species and habitat change in western Washington

USGS Publications Warehouse

Adams, Michael J.

1999-01-01

Amphibian declines may frequently be associated with multiple, correlated factors. In western North America, exotic species and hydrological changes are often correlated and are considered 2 of the greatest threats to freshwater systems. Bullfrog (Rana catesbeiana) introductions are frequently cited as a threat to lentic-breeding anurans native to western North America and are a suspected factor in the decline of red-legged frogs (Rana aurora) in California. Introduced fish and habitat change are cited less frequently but are equally viable hypotheses. I examined the relation among introduced species, habitat, and the distribution and abundance of red-legged frogs in western Washington. Red-legged frog occurrence in the Puget Lowlands was more closely associated with habitat structure and the presence of exotic fish than with the presence of bull-frogs. The spread of exotics is correlated with a shift toward greater permanence in wetland habitats regionally. Conservation of more ephemeral wetland habitats may have direct benefits for some native amphibians and may also reduce the threat of exotic fish and bullfrogs, both of which were associated with permanent wetlands. Research and conservation efforts for lowland anurans in the West should emphasize the complexities of multiple contributing factors to amphibian losses.

Using niche-modelling and species-specific cost analyses to determine a multispecies corridor in a fragmented landscape

PubMed Central

Zurano, Juan Pablo; Selleski, Nicole; Schneider, Rosio G.

2017-01-01

Misiones, Argentina, contains the largest remaining tract of Upper Paraná Atlantic Forest ecoregion; however, ~50% of native forest is unprotected and located in a mosaic of plantations, agriculture, and pastures. Existing protected areas are becoming increasingly isolated due to ongoing habitat modification. These factors, combined with lower than expected regional carnivore densities, emphasize the need to understand the effect of fragmentation on animal movement and connectivity between protected areas. Using detection dogs and genetic analyses of scat, we collected data on jaguars (Panthera onca), pumas (Puma concolor), ocelots (Leopardus pardalis), oncillas (Leopardus tigrinus), and bush dogs (Speothos venaticus) across habitats that varied in vegetation, disturbance, human proximity, and protective status. With MaxEnt we evaluated habitat use, habitat suitability, and potential species richness for the five carnivores across northern-central Misiones, Argentina. Through a multifaceted cost analysis that included unique requirements of each carnivore and varying degrees of overlap among them, we determined the optimal location for primary/secondary corridors that would link the northern-central zones of the Green Corridor in Misiones and identified areas within these corridors needing priority management. A secondary analysis, comparing these multispecies corridors with the jaguar’s unique requirements, demonstrated that this multispecies approach balanced the preferences of all five species and effectively captured areas required by this highly restricted and endangered carnivore. We emphasize the potential importance of expanding beyond a single umbrella or focal species when developing biological corridors that aim to capture the varied ecological requirements of coexisting species and ecological processes across the landscape. Detection dogs and genetic analyses of scat allow data on multiple species to be collected efficiently across multiple habitat types independent of the degree of legal protection. These data used with multifocal GIS analyses balance the varying degree of overlap and unique properties among them allowing for comprehensive conservation strategies to be developed relatively rapidly. Our comprehensive approach serves as a model to other regions faced with habitat loss and lack of data. The five carnivores focused on in our study have wide ranges, so the results from this study can be expanded and combined with surrounding countries, with analyses at the species or community level. PMID:28841692

Using niche-modelling and species-specific cost analyses to determine a multispecies corridor in a fragmented landscape.

PubMed

DeMatteo, Karen E; Rinas, Miguel A; Zurano, Juan Pablo; Selleski, Nicole; Schneider, Rosio G; Argüelles, Carina F

2017-01-01

Misiones, Argentina, contains the largest remaining tract of Upper Paraná Atlantic Forest ecoregion; however, ~50% of native forest is unprotected and located in a mosaic of plantations, agriculture, and pastures. Existing protected areas are becoming increasingly isolated due to ongoing habitat modification. These factors, combined with lower than expected regional carnivore densities, emphasize the need to understand the effect of fragmentation on animal movement and connectivity between protected areas. Using detection dogs and genetic analyses of scat, we collected data on jaguars (Panthera onca), pumas (Puma concolor), ocelots (Leopardus pardalis), oncillas (Leopardus tigrinus), and bush dogs (Speothos venaticus) across habitats that varied in vegetation, disturbance, human proximity, and protective status. With MaxEnt we evaluated habitat use, habitat suitability, and potential species richness for the five carnivores across northern-central Misiones, Argentina. Through a multifaceted cost analysis that included unique requirements of each carnivore and varying degrees of overlap among them, we determined the optimal location for primary/secondary corridors that would link the northern-central zones of the Green Corridor in Misiones and identified areas within these corridors needing priority management. A secondary analysis, comparing these multispecies corridors with the jaguar's unique requirements, demonstrated that this multispecies approach balanced the preferences of all five species and effectively captured areas required by this highly restricted and endangered carnivore. We emphasize the potential importance of expanding beyond a single umbrella or focal species when developing biological corridors that aim to capture the varied ecological requirements of coexisting species and ecological processes across the landscape. Detection dogs and genetic analyses of scat allow data on multiple species to be collected efficiently across multiple habitat types independent of the degree of legal protection. These data used with multifocal GIS analyses balance the varying degree of overlap and unique properties among them allowing for comprehensive conservation strategies to be developed relatively rapidly. Our comprehensive approach serves as a model to other regions faced with habitat loss and lack of data. The five carnivores focused on in our study have wide ranges, so the results from this study can be expanded and combined with surrounding countries, with analyses at the species or community level.

Environmental Effects of Dredging Program: Inland Waterways: Proceedings of a National Workshop on the Beneficial Uses of Dredged Material Held in St. Paul, Minnesota on 27-30 October 1987

DTIC Science & Technology

1988-11-01

addition, I leave with the knowledge that the cost-sharing concept is a viable option which will result in many navigation improvements finally getting...two recorded incidences to date in CE disposal CDFs in the Great Lakes. To my knowledge , no outbreaks have occurred elsewhere. Changing habitat types...water- skiers , and other recreation seekers. That right- of-way in a naturally occurring, multiple-use resource, is in contrast to a rail or highway

New England wildlife: management forested habitats

Treesearch

Richard M. DeGraaf; Mariko Yamasaki; William B. Leak; John W. Lanier

1992-01-01

Presents silvicultural treatments for six major cover-type groups in New England to produce stand conditions that provide habitat opportunities for a wide range of wildlife species. Includes matrices for species occurrence and utilization by forested and nonforested habitats, habitat breadth and size class, and structural habitat features for the 338 wildlife species...

Where to Combat Shrub Encroachment in Alpine Timberline Ecosystems: Combining Remotely-Sensed Vegetation Information with Species Habitat Modelling

PubMed Central

Braunisch, Veronika; Patthey, Patrick; Arlettaz, Raphaël

2016-01-01

In many cultural landscapes, the abandonment of traditional grazing leads to encroachment of pastures by woody plants, which reduces habitat heterogeneity and impacts biodiversity typical of semi-open habitats. We developed a framework of mutually interacting spatial models to locate areas where shrub encroachment in Alpine treeline ecosystems deteriorates vulnerable species’ habitat, using black grouse Tetrao tetrix (L.) in the Swiss Alps as a study model. Combining field observations and remote-sensing information we 1) identified and located the six predominant treeline vegetation types; 2) modelled current black grouse breeding habitat as a function thereof so as to derive optimal habitat profiles; 3) simulated from these profiles the theoretical spatial extension of breeding habitat when assuming optimal vegetation conditions throughout; and used the discrepancy between (2) and (3) to 4) locate major aggregations of homogeneous shrub vegetation in otherwise suitable breeding habitat as priority sites for habitat restoration. All six vegetation types (alpine pasture, coniferous forest, Alnus viridis (Chaix), Rhododendron-dominated, Juniperus-dominated and mixed heathland) were predicted with high accuracy (AUC >0.9). Breeding black grouse preferred a heterogeneous mosaic of vegetation types, with none exceeding 50% cover. While 15% of the timberline belt currently offered suitable breeding habitat, twice that fraction (29%) would potentially be suitable when assuming optimal shrub and ground vegetation conditions throughout the study area. Yet, only 10% of this difference was attributed to habitat deterioration by shrub-encroachment of dense heathland (all types 5.2%) and Alnus viridis (4.8%). The presented method provides both a general, large-scale assessment of areas covered by dense shrub vegetation as well as specific target values and priority areas for habitat restoration related to a selected target organism. This facilitates optimizing the spatial allocation of management resources in geographic regions where shrub encroachment represents a major biodiversity conservation issue. PMID:27727325

Forest succession on four habitat types in western Montana

Treesearch

Stephen F. Arno; Dennis G. Simmerman; Robert E. Keane

1985-01-01

Presents classifications of successional community types on four major forest habitat types in western Montana. Classifications show the sequences of seral community types developing after stand-replacing wildfire and clearcutting with broadcast burning, mechanical scarification, or no followup treatment. Information is provided for associating vegetational response to...

Forest vegetation in the Rocky Mountain and Intermountain regions: Habitat types and community types

Treesearch

Robert R. Alexander

1988-01-01

Habitat types and community types and their phases for the major forest tree species in the Rocky Mountain and Intermountain regions are tabulated. Included are the name(s), general location, elevation, relative site, successional status, principal tree and undergrowth associates, and the authority.

Taxonomic and functional trait diversity of wild bees in different urban settings.

PubMed

Normandin, Étienne; Vereecken, Nicolas J; Buddle, Christopher M; Fournier, Valérie

2017-01-01

Urbanization is one of the major anthropogenic processes contributing to local habitat loss and extirpation of numerous species, including wild bees, the most widespread pollinators. Little is known about the mechanisms through which urbanization impacts wild bee communities, or the types of urban green spaces that best promote their conservation in cities. The main objective of this study was to describe and compare wild bee community diversity, structure, and dynamics in two Canadian cities, Montreal and Quebec City. A second objective was to compare functional trait diversity among three habitat types (cemeteries, community gardens and urban parks) within each city. Bees were collected using pan traps and netting on the same 46 sites, multiple times, over the active season in 2012 and 2013. A total of 32,237 specimens were identified, representing 200 species and 6 families, including two new continental records, Hylaeus communis Nylander (1852) and Anthidium florentinum (Fabricius, 1775). Despite high community evenness, we found significant abundance of diverse species, including exotic ones. Spatio-temporal analysis showed higher stability in the most urbanized city (Montreal) but low nestedness of species assemblages among the three urban habitats in both cities. Our study demonstrates that cities are home to diverse communities of wild bees, but in turn affect bee community structure and dynamics. We also found that community gardens harbour high levels of functional trait diversity. Urban agriculture therefore contributes substantially to the provision of functionally diverse bee communities and possibly to urban pollination services.

Taxonomic and functional trait diversity of wild bees in different urban settings

PubMed Central

Buddle, Christopher M.; Fournier, Valérie

2017-01-01

Urbanization is one of the major anthropogenic processes contributing to local habitat loss and extirpation of numerous species, including wild bees, the most widespread pollinators. Little is known about the mechanisms through which urbanization impacts wild bee communities, or the types of urban green spaces that best promote their conservation in cities. The main objective of this study was to describe and compare wild bee community diversity, structure, and dynamics in two Canadian cities, Montreal and Quebec City. A second objective was to compare functional trait diversity among three habitat types (cemeteries, community gardens and urban parks) within each city. Bees were collected using pan traps and netting on the same 46 sites, multiple times, over the active season in 2012 and 2013. A total of 32,237 specimens were identified, representing 200 species and 6 families, including two new continental records, Hylaeus communis Nylander (1852) and Anthidium florentinum (Fabricius, 1775). Despite high community evenness, we found significant abundance of diverse species, including exotic ones. Spatio-temporal analysis showed higher stability in the most urbanized city (Montreal) but low nestedness of species assemblages among the three urban habitats in both cities. Our study demonstrates that cities are home to diverse communities of wild bees, but in turn affect bee community structure and dynamics. We also found that community gardens harbour high levels of functional trait diversity. Urban agriculture therefore contributes substantially to the provision of functionally diverse bee communities and possibly to urban pollination services. PMID:28286711

Land use and habitat conditions across the southwestern Wyoming sagebrush steppe: development impacts, management effectiveness and the distribution of invasive plants

USGS Publications Warehouse

Manier, Daniel J.; Aldridge, Cameron L.; Anderson, Patrick; Chong, Geneva; Homer, Collin G.; O'Donnell, Michael S.; Schell, Spencer

2011-01-01

For the past several years, USGS has taken a multi-faceted approach to investigating the condition and trends in sagebrush steppe ecosystems. This recent effort builds upon decades of work in semi-arid ecosystems providing a specific, applied focus on the cumulative impacts of expanding human activities across these landscapes. Here, we discuss several on-going projects contributing to these efforts: (1) mapping and monitoring the distribution and condition of shrub steppe communities with local detail at a regional scale, (2) assessing the relationships between specific, land-use features (for example, roads, transmission lines, industrial pads) and invasive plants, including their potential (environmentally defined) distribution across the region, and (3) monitoring the effects of habitat treatments on the ecosystem, including wildlife use and invasive plant abundance. This research is focused on the northern sagebrush steppe, primarily in Wyoming, but also extending into Montana, Colorado, Utah and Idaho. The study area includes a range of sagebrush types (including, Artemisia tridentata ssp. tridentata, Artemisia tridentata ssp. wyomingensis, Artemisia tridentata ssp. vaseyana, Artemisia nova) and other semi-arid shrubland types (for example, Sarcobatus vermiculatus, Atriplex confertifolia, Atriplex gardneri), impacted by extensive interface between steppe ecosystems and industrial energy activities resulting in a revealing multiple-variable analysis. We use a combination of remote sensing (AWiFS (1 Any reference to platforms, data sources, equipment, software, patented or trade-marked methods is for information purposes only. It does not represent endorsement of the U.S.D.I., U.S.G.S. or the authors), Landsat and Quickbird platforms), Geographic Information System (GIS) design and data management, and field-based, replicated sampling to generate multiple scales of data representing the distribution of shrub communities for the habitat inventory. Invasive plant sampling focused on the interaction between human infrastructure and weedy plant distributions in southwestern Wyoming, while also capturing spatial variability associated with growing conditions and management across the region. In a separate but linked study, we also sampled native and invasive composition of recent and historic habitat treatments. Here, we summarize findings of this ongoing work, highlighting patterns and relationships between vegetation (native and invasive), land cover, landform, and land-use patterns in the sagebrush steppe.

Effect of habitat and foraging height on bat activity in the coastal plain of South Carolina.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Menzel, Jennifer, M.; Menzel, Michael A.; Kilgo, John C.

2005-07-01

A comparison of bat activity levels in the Coastal Plain of South Carolina among 5 habitat types: forested riparian areas, clearcuts, young pine plantations, mature pine plantations and pine savannas, using time expansion radio-microphones and integrated detectors to simultaneously monitor bat activity at three heights in each habitat type.

Comparison of macroinvertebrate-derived stream quality metrics between snag and riffle habitats

USGS Publications Warehouse

Stepenuck, K.F.; Crunkilton, R.L.; Bozek, Michael A.; Wang, L.

2008-01-01

We compared benthic macroinvertebrate assemblage structure at snag and riffle habitats in 43 Wisconsin streams across a range of watershed urbanization using a variety of stream quality metrics. Discriminant analysis indicated that dominant taxa at riffles and snags differed; Hydropsychid caddisflies (Hydropsyche betteni and Cheumatopsyche spp.) and elmid beetles (Optioservus spp. and Stenemlis spp.) typified riffles, whereas isopods (Asellus intermedius) and amphipods (Hyalella azteca and Gammarus pseudolimnaeus) predominated in snags. Analysis of covariance indicated that samples from snag and riffle habitats differed significantly in their response to the urbanization gradient for the Hilsenhoff biotic index (BI), Shannon's diversity index, and percent of filterers, shredders, and pollution intolerant Ephemeroptera, Plecoptera, and Trichoptera (EPT) at each stream site (p ??? 0.10). These differences suggest that although macroinvertebrate assemblages present in either habitat type are sensitive to detecting the effects of urbanization, metrics derived from different habitats should not be intermixed when assessing stream quality through biomonitoring. This can be a limitation to resource managers who wish to compare water quality among streams where the same habitat type is not available at all stream locations, or where a specific habitat type (i.e., a riffle) is required to determine a metric value (i.e., BI). To account for differences in stream quality at sites lacking riffle habitat, snag-derived metric values can be adjusted based on those obtained from riffles that have been exposed to the same level of urbanization. Comparison of nonlinear regression equations that related stream quality metric values from the two habitat types to percent watershed urbanization indicated that snag habitats had on average 30.2 fewer percent EPT individuals, a lower diversity index value than riffles, and a BI value of 0.29 greater than riffles. ?? 2008 American Water Resources Association.

Weather conditions drive dynamic habitat selection in a generalist predator.

PubMed

Sunde, Peter; Thorup, Kasper; Jacobsen, Lars B; Rahbek, Carsten

2014-01-01

Despite the dynamic nature of habitat selection, temporal variation as arising from factors such as weather are rarely quantified in species-habitat relationships. We analysed habitat use and selection (use/availability) of foraging, radio-tagged little owls (Athene noctua), a nocturnal, year-round resident generalist predator, to see how this varied as a function of weather, season and availability. Use of the two most frequently used land cover types, gardens/buildings and cultivated fields varied more than 3-fold as a simple function of season and weather through linear effects of wind and quadratic effects of temperature. Even when controlling for the temporal context, both land cover types were used more evenly than predicted from variation in availability (functional response in habitat selection). Use of two other land cover categories (pastures and moist areas) increased linearly with temperature and was proportional to their availability. The study shows that habitat selection by generalist foragers may be highly dependent on temporal variables such as weather, probably because such foragers switch between weather dependent feeding opportunities offered by different land cover types. An opportunistic foraging strategy in a landscape with erratically appearing feeding opportunities in different land cover types, may possibly also explain decreasing selection of the two most frequently used land cover types with increasing availability.

Mitochondrial sequence divergence among Antarctic killer whale ecotypes is consistent with multiple species.

PubMed

LeDuc, Richard G; Robertson, Kelly M; Pitman, Robert L

2008-08-23

Recently, three visually distinct forms of killer whales (Orcinus orca) were described from Antarctic waters and designated as types A, B and C. Based on consistent differences in prey selection and habitat preferences, morphological divergence and apparent lack of interbreeding among these broadly sympatric forms, it was suggested that they may represent separate species. To evaluate this hypothesis, we compared complete sequences of the mitochondrial control region from 81 Antarctic killer whale samples, including 9 type A, 18 type B, 47 type C and 7 type-undetermined individuals. We found three fixed differences that separated type A from B and C, and a single fixed difference that separated type C from A and B. These results are consistent with reproductive isolation among the different forms, although caution is needed in drawing further conclusions. Despite dramatic differences in morphology and ecology, the relatively low levels of sequence divergence in Antarctic killer whales indicate that these evolutionary changes occurred relatively rapidly and recently.

Correlated growth and survival of juvenile spectacled eiders: Evidence of habitat limitation?

USGS Publications Warehouse

Flint, Paul L.; Morse, Julie A.; Grand, James B.; Moran, Christine L.

2006-01-01

We studied the growth and survival of Spectacled Eider (Somateria fischeri) ducklings to 30 days of age along the lower Kashunuk River on the Yukon-Kuskokwim Delta from 1995 to 2000. We replicated this study at a second site, Kigigak Island, in 1999 and 2000. Age-adjusted estimates of duckling mass and survival at 30 days posthatching were highly variable. Duckling survival was consistently higher on Kigigak Island in 1999 and 2000, averaging 67%, while survival on the Kashunuk River averaged 45% during the same time period. Duckling survival was negatively related to hatching date. At the Kashunuk River site our data supported models that indicated age-adjusted mass varied with habitat type and declined with hatching date. Ducklings from Kashunuk River were heavier in 1999, while ducklings from Kigigak Island were heavier in 2000. However, we found a positive correlation between 30-day duckling survival and age-adjusted mass, suggesting a localized environmental effect on both parameters. We conclude that predation may be the proximate mechanism of mortality, but habitat conditions are likely the ultimate factors influencing duckling survival. Geographic variation in rates of duckling survival and apparent growth suggest that spatial heterogeneity in population vital rates is occurring at multiple levels.

Habitat Fragmentation Intensifies Trade-Offs between Biodiversity and Ecosystem Services in a Heathland Ecosystem in Southern England.

PubMed

Cordingley, Justine E; Newton, Adrian C; Rose, Robert J; Clarke, Ralph T; Bullock, James M

2015-01-01

While habitat fragmentation represents a major threat to global biodiversity, its impacts on provision of ecosystem services are largely unknown. We analysed biodiversity value and provision of multiple ecosystem services in 110 fragments of lowland heathland ecosystems in southern England, in which vegetation dynamics have been monitored for over 30 years. Decreasing fragment size was found to be associated with a decrease in biodiversity and recreational values, but an increase in relative carbon storage, aesthetic value and timber value. The trade-off between either biodiversity or recreational values with the other ecosystem services therefore became more pronounced as heathland size decreased. This was attributed to a higher rate of woody succession in smaller heathland fragments over the past three decades, and contrasting values of different successional vegetation types for biodiversity and provision of ecosystem services. These results suggest that habitat fragmentation can reduce the potential for developing "win win" solutions that contribute to biodiversity conservation while also supporting socio-economic development. Approaches to multi-purpose management of fragmented landscapes should therefore consider the potential trade-offs in ecosystem services and biodiversity associated with fragmentation, in order to make an effective contribution to sustainable development.

Habitat Fragmentation Intensifies Trade-Offs between Biodiversity and Ecosystem Services in a Heathland Ecosystem in Southern England

PubMed Central

Cordingley, Justine E.; Newton, Adrian C.; Rose, Robert J.; Clarke, Ralph T.; Bullock, James M.

2015-01-01

While habitat fragmentation represents a major threat to global biodiversity, its impacts on provision of ecosystem services are largely unknown. We analysed biodiversity value and provision of multiple ecosystem services in 110 fragments of lowland heathland ecosystems in southern England, in which vegetation dynamics have been monitored for over 30 years. Decreasing fragment size was found to be associated with a decrease in biodiversity and recreational values, but an increase in relative carbon storage, aesthetic value and timber value. The trade-off between either biodiversity or recreational values with the other ecosystem services therefore became more pronounced as heathland size decreased. This was attributed to a higher rate of woody succession in smaller heathland fragments over the past three decades, and contrasting values of different successional vegetation types for biodiversity and provision of ecosystem services. These results suggest that habitat fragmentation can reduce the potential for developing “win win” solutions that contribute to biodiversity conservation while also supporting socio-economic development. Approaches to multi-purpose management of fragmented landscapes should therefore consider the potential trade-offs in ecosystem services and biodiversity associated with fragmentation, in order to make an effective contribution to sustainable development. PMID:26114753

Peripheral genetic structure of Helicoverpa zea indicates asymmetrical panmixia

USDA-ARS?s Scientific Manuscript database

Seasonal climatic shifts create peripheral habitats that alternate between habitable and uninhabitable for migratory species. Such dynamic peripheral habitats are potential sites where migratory species could evolve high genetic diversity resulting from convergence of immigrants from multiple region...

Urbanisation at multiple scales is associated with larger size and higher fecundity of an orb-weaving spider.

PubMed

Lowe, Elizabeth C; Wilder, Shawn M; Hochuli, Dieter F

2014-01-01

Urbanisation modifies landscapes at multiple scales, impacting the local climate and changing the extent and quality of natural habitats. These habitat modifications significantly alter species distributions and can result in increased abundance of select species which are able to exploit novel ecosystems. We examined the effect of urbanisation at local and landscape scales on the body size, lipid reserves and ovary weight of Nephila plumipes, an orb weaving spider commonly found in both urban and natural landscapes. Habitat variables at landscape, local and microhabitat scales were integrated to create a series of indexes that quantified the degree of urbanisation at each site. Spider size was negatively associated with vegetation cover at a landscape scale, and positively associated with hard surfaces and anthropogenic disturbance on a local and microhabitat scale. Ovary weight increased in higher socioeconomic areas and was positively associated with hard surfaces and leaf litter at a local scale. The larger size and increased reproductive capacity of N.plumipes in urban areas show that some species benefit from the habitat changes associated with urbanisation. Our results also highlight the importance of incorporating environmental variables from multiple scales when quantifying species responses to landscape modification.

Urbanisation at Multiple Scales Is Associated with Larger Size and Higher Fecundity of an Orb-Weaving Spider

PubMed Central

Lowe, Elizabeth C.; Wilder, Shawn M.; Hochuli, Dieter F.

2014-01-01

Urbanisation modifies landscapes at multiple scales, impacting the local climate and changing the extent and quality of natural habitats. These habitat modifications significantly alter species distributions and can result in increased abundance of select species which are able to exploit novel ecosystems. We examined the effect of urbanisation at local and landscape scales on the body size, lipid reserves and ovary weight of Nephila plumipes, an orb weaving spider commonly found in both urban and natural landscapes. Habitat variables at landscape, local and microhabitat scales were integrated to create a series of indexes that quantified the degree of urbanisation at each site. Spider size was negatively associated with vegetation cover at a landscape scale, and positively associated with hard surfaces and anthropogenic disturbance on a local and microhabitat scale. Ovary weight increased in higher socioeconomic areas and was positively associated with hard surfaces and leaf litter at a local scale. The larger size and increased reproductive capacity of N.plumipes in urban areas show that some species benefit from the habitat changes associated with urbanisation. Our results also highlight the importance of incorporating environmental variables from multiple scales when quantifying species responses to landscape modification. PMID:25140809

Quantifying home range habitat requirements for bobcats (Lynx rufus) in Vermont, USA

USGS Publications Warehouse

Donovan, Therese; Freeman, Mark; Abouelezz, Hanem; Royar, Kim; Howard, Alan D.; Mickey, R.

2011-01-01

We demonstrate how home range and habitat use analysis can inform landscape-scale conservation planning for the bobcat, Lynx rufus, in Vermont USA. From 2005 to 2008, we outfitted fourteen bobcats with GPS collars that collected spatially explicit locations from individuals every 4 h for 3–4 months. Kernel home range techniques were used to estimate home range size and boundaries, and to quantify the utilization distribution (UD), which is a spatially explicit, topographic mapping of how different areas within the home range are used. We then used GIS methods to quantify both biotic (e.g. habitat types, stream density) and abiotic (e.g. slope) resources within each bobcat’s home range. Across bobcats, upper 20th UD percentiles (core areas) had 18% less agriculture, 42% less development, 26% more bobcat habitat (shrub, deciduous, coniferous forest, and wetland cover types), and 33% lower road density than lower UD percentiles (UD valleys). For each bobcat, we used Akaike’s Information Criterion (AIC) to evaluate and compare 24 alternative Resource Utilization Functions (hypotheses) that could explain the topology of the individual’s UD. A model-averaged population-level Resource Utilization Function suggested positive responses to shrub, deciduous, coniferous forest, and wetland cover types within 1 km of a location, and negative responses to roads and mixed forest cover types within 1 km of a location. Applying this model-averaged function to each pixel in the study area revealed habitat suitability for bobcats across the entire study area, with suitability scores ranging between −1.69 and 1.44, where higher values were assumed to represent higher quality habitat. The southern Champlain Valley, which contained ample wetland and shrub habitat, was a concentrated area of highly suitable habitat, while areas at higher elevation areas were less suitable. Female bobcat home ranges, on average, had an average habitat suitability score of near 0, indicating that home ranges consisted of both beneficial and detrimental habitat types. We discuss the application of habitat suitability mapping and home range requirements for bobcat conservation and landscape scale management.

Quantifying home range habitat requirements for bobcats (Lynx rufus) in Vermont, USA

USGS Publications Warehouse

Donovan, T.M.; Freeman, M.; Abouelezz, H.; Royar, Kim; Howard, A.; Mickey, R.

2011-01-01

We demonstrate how home range and habitat use analysis can inform landscape-scale conservation planning for the bobcat, Lynx rufus, in Vermont USA. From 2005 to 2008, we outfitted fourteen bobcats with GPS collars that collected spatially explicit locations from individuals every 4. h for 3-4. months. Kernel home range techniques were used to estimate home range size and boundaries, and to quantify the utilization distribution (UD), which is a spatially explicit, topographic mapping of how different areas within the home range are used. We then used GIS methods to quantify both biotic (e.g. habitat types, stream density) and abiotic (e.g. slope) resources within each bobcat's home range. Across bobcats, upper 20th UD percentiles (core areas) had 18% less agriculture, 42% less development, 26% more bobcat habitat (shrub, deciduous, coniferous forest, and wetland cover types), and 33% lower road density than lower UD percentiles (UD valleys). For each bobcat, we used Akaike's Information Criterion (AIC) to evaluate and compare 24 alternative Resource Utilization Functions (hypotheses) that could explain the topology of the individual's UD. A model-averaged population-level Resource Utilization Function suggested positive responses to shrub, deciduous, coniferous forest, and wetland cover types within 1. km of a location, and negative responses to roads and mixed forest cover types within 1. km of a location. Applying this model-averaged function to each pixel in the study area revealed habitat suitability for bobcats across the entire study area, with suitability scores ranging between -1.69 and 1.44, where higher values were assumed to represent higher quality habitat. The southern Champlain Valley, which contained ample wetland and shrub habitat, was a concentrated area of highly suitable habitat, while areas at higher elevation areas were less suitable. Female bobcat home ranges, on average, had an average habitat suitability score of near 0, indicating that home ranges consisted of both beneficial and detrimental habitat types. We discuss the application of habitat suitability mapping and home range requirements for bobcat conservation and landscape scale management. ?? 2011.

CONSERVATION IMPLICATIONS OF MULTIPLE HABITAT USE BY NORTHERN WATERTHRUSHES DURING THE NONBREEDING SEASON

Treesearch

SHERMAN L. BURSON III; LEONARD R. REITSMA; PAMELA D. HUNT

2005-01-01

Abstract.—Using evidence from individually-marked birds and radio-telemetry, we studied daily and seasonal habitat use of Northern Waterthrushes (Seiurus novaboracensis) in Puerto Rico during the nonbreeding season from 1999 to 2001. Our study was conducted in mangrove habitats along the southwest and east coasts and near ponds and washes in mesquite savanna in the...

Identifying ecological corridors for Amur tigers (Panthera tigris altaica) and Amur leopards (Panthera pardus orientalis).

PubMed

Miquelle, Dale G; Rozhnov, Vyachaslav V; Ermoshin, Victor; Murzin, Andre A; Nikolaev, Igor G; Hernandez-Blanco, Jose A; Naidenko, Sergie V

2015-07-01

The rapid explosion of human populations and the associated development of human-dominated landscapes have drastically reduced and fragmented habitat for tigers (Panthera tigris) and leopards (Panthera pardus) across Asia, resulting in multiple small populations. However, Amur tiger (Panthera tigris altaica) habitat in Russia has remained largely interconnected, except for a break between tigers in southwest Primorye and the southern Sikhote-Alin Mountains. This habitat patch in southwest Primorye also retains the last population of Amur leopards (Panthera pardus orientalis). Genetic differentiation of tigers in southwest Primorye and the Sikhote-Alin Mountains along with survey data suggest that habitat fragmentation is limiting movement of tigers and leopards across the Razdolnaya River basin. We looked at historical and recent survey data on tigers and leopards and mapped existing cover types to examine land-use patterns of both large felids and humans in the development strip along the Razdolnaya River. We then used least-cost distance analyses to identify the most effective potential corridor to retain connectivity for large felids between Land of the Leopard National Park and Ussuriskii Zapovednik (Reserve). We identified a single potential corridor that still exists with a total distance of 62.5 km from Land of the Leopard National Park to Ussuriskii Zapovednik, mostly (93%) through forested habitat. We recommend formal recognition of a Razdolnaya ecological corridor and provide specific recommendations for each of 3 proposed management sections. © 2015 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and Wiley Publishing Asia Pty Ltd.

Gene flow and pathogen transmission among bobcats (Lynx rufus) in a fragmented urban landscape

USGS Publications Warehouse

Lee, Justin S.; Ruell, Emily W.; Boydston, Erin E.; Lyren, Lisa M.; Alonso, Robert S.; Troyer, Jennifer L.; Crooks, Kevin R.; VandeWoude, Sue

2012-01-01

Urbanization can result in the fragmentation of once contiguous natural landscapes into a patchy habitat interspersed within a growing urban matrix. Animals living in fragmented landscapes often have reduced movement among habitat patches because of avoidance of intervening human development, which potentially leads to both reduced gene flow and pathogen transmission between patches. Mammalian carnivores with large home ranges, such as bobcats (Lynx rufus), may be particularly sensitive to habitat fragmentation. We performed genetic analyses on bobcats and their directly transmitted viral pathogen, feline immunodeficiency virus (FIV), to investigate the effects of urbanization on bobcat movement. We predicted that urban development, including major freeways, would limit bobcat movement and result in genetically structured host and pathogen populations. We analysed molecular markers from 106 bobcats and 19 FIV isolates from seropositive animals in urban southern California. Our findings indicate that reduced gene flow between two primary habitat patches has resulted in genetically distinct bobcat subpopulations separated by urban development including a major highway. However, the distribution of genetic diversity among FIV isolates determined through phylogenetic analyses indicates that pathogen genotypes are less spatially structured--exhibiting a more even distribution between habitat fragments. We conclude that the types of movement and contact sufficient for disease transmission occur with enough frequency to preclude structuring among the viral population, but that the bobcat population is structured owing to low levels of effective bobcat migration resulting in gene flow. We illustrate the utility in using multiple molecular markers that differentially detect movement and gene flow between subpopulations when assessing connectivity.

Classification of immature mosquito species according to characteristics of the larval habitat in the subtropical province of Chaco, Argentina.

PubMed

Stein, Marina; Ludueña-Almeida, Francisco; Willener, Juana Alicia; Almirón, Walter Ricardo

2011-06-01

To classify mosquito species based on common features of their habitats, samples were obtained fortnightly between June 2001-October 2003 in the subtropical province of Chaco, Argentina. Data on the type of larval habitat, nature of the habitat (artificial or natural), size, depth, location related to sunlight, distance to the neighbouring houses, type of substrate, organic material, vegetation and algae type and their presence were collected. Data on the permanence, temperature, pH, turbidity, colour, odour and movement of the larval habitat's water were also collected. From the cluster analysis, three groups of species associated by their degree of habitat similarity were obtained and are listed below. Group 1 consisted of Aedes aegypti. Group 2 consisted of Culex imitator, Culex davisi, Wyeomyia muehlensi and Toxorhynchites haemorrhoidalis separatus. Within group 3, two subgroups are distinguished: A (Psorophora ferox, Psorophora cyanescens, Psorophora varinervis, Psorophora confinnis, Psorophora cingulata, Ochlerotatus hastatus-oligopistus, Ochlerotatus serratus, Ochlerotatus scapularis, Culex intrincatus, Culex quinquefasciatus, Culex pilosus, Ochlerotatus albifasciatus, Culex bidens) and B (Culex maxi, Culex eduardoi, Culex chidesteri, Uranotaenia lowii, Uranotaenia pulcherrima, Anopheles neomaculipalpus, Anopheles triannulatus, Anopheles albitarsis, Uranotaenia apicalis, Mansonia humeralis and Aedeomyia squamipennis). Principal component analysis indicates that the size of the larval habitats and the presence of aquatic vegetation are the main characteristics that explain the variation among different species. In contrast, water permanence is second in importance. Water temperature, pH and the type of larval habitat are less important in explaining the clustering of species.

Avian mercury exposure and toxicological risk across western North America: A synthesis

USGS Publications Warehouse

Ackerman, Joshua T.; Eagles-Smith, Collin A.; Herzog, Mark; Hartman, Christopher; Peterson, Sarah; Evers, David C.; Jackson, Allyson K.; Elliott, John E.; Vander Pol, Stacy S.; Bryan, Colleen E.

2016-01-01

Methylmercury contamination of the environment is an important issue globally, and birds are useful bioindicators for mercury monitoring programs. The available data on mercury contamination of birds in western North America were synthesized. Original data from multiple databases were obtained and a literature review was conducted to obtain additional mercury concentrations. In total, 29219 original bird mercury concentrations from 225 species were compiled, and an additional 1712 mean mercury concentrations, representing 19998 individuals and 176 species, from 200 publications were obtained. To make mercury data comparable across bird tissues, published equations of tissue mercury correlations were used to convert all mercury concentrations into blood-equivalent mercury concentrations. Blood-equivalent mercury concentrations differed among species, foraging guilds, habitat types, locations, and ecoregions. Piscivores and carnivores exhibited the greatest mercury concentrations, whereas herbivores and granivores exhibited the lowest mercury concentrations. Bird mercury concentrations were greatest in ocean and salt marsh habitats and lowest in terrestrial habitats. Bird mercury concentrations were above toxicity benchmarks in many areas throughout western North America, and multiple hotspots were identified. Additionally, published toxicity benchmarks established in multiple tissues were summarized and translated into a common blood-equivalent mercury concentration. Overall, 66% of birds sampled in western North American exceeded a blood-equivalent mercury concentration of 0.2 μg/g wet weight (ww; above background levels), which is the lowest-observed effect level, 28% exceeded 1.0 μg/g ww (moderate risk), 8% exceeded 3.0 μg/g ww (high risk), and 4% exceeded 4.0 μg/g ww (severe risk). Mercury monitoring programs should sample bird tissues, such as adult blood and eggs, that are most-easily translated into tissues with well-developed toxicity benchmarks and that are directly relevant to bird reproduction. Results indicate that mercury contamination of birds is prevalent in many areas throughout western North America, and large-scale ecological attributes are important factors influencing bird mercury concentrations.

Avian mercury exposure and toxicological risk across western North America: A synthesis

PubMed Central

Ackerman, Joshua T.; Eagles-Smith, Collin A.; Herzog, Mark P.; Hartman, C. Alex; Peterson, Sarah H.; Evers, David C.; Jackson, Allyson K.; Elliott, John E.; Vander Pol, Stacy S.; Bryan, Colleen E.

2017-01-01

Methylmercury contamination of the environment is an important issue globally and birds are useful bioindicators for mercury monitoring programs. The available data on mercury contamination of birds in western North America were synthesized. Original data from multiple databases were obtained and a literature review was conducted to obtain additional mercury concentrations. In total, 29219 original bird mercury concentrations from 225 species were compiled, and an additional 1712 mean mercury concentrations, representing 19998 individuals and 176 species, from 200 publications were obtained. To make mercury data comparable across bird tissues, published equations of tissue mercury correlations were used to convert all mercury concentrations into blood-equivalent mercury concentrations. Blood-equivalent mercury concentrations differed among species, foraging guilds, habitat types, locations, and ecoregions. Piscivores and carnivores exhibited the greatest mercury concentrations, whereas herbivores and granivores exhibited the lowest mercury concentrations. Bird mercury concentrations were greatest in ocean and salt marsh habitats and lowest in terrestrial habitats. Bird mercury concentrations were above toxicity benchmarks in many areas throughout western North America, and multiple hotspots were identified. Additionally, published toxicity benchmarks established in multiple tissues were summarized and translated into a common blood-equivalent mercury concentration. Overall, 66% of birds sampled in western North American exceeded a blood-equivalent mercury concentration of 0.2 μg/g wet weight (ww; above background levels), which is the lowest-observed effect level, 28% exceeded 1.0 μg/g ww (moderate risk), 8% exceeded 3.0 μg/g ww (high risk), and 4% exceeded 4.0 μg/g ww (severe risk). Mercury monitoring programs should sample bird tissues, such as adult blood and eggs, that are most-easily translated into tissues with well-developed toxicity benchmarks and that are directly relevant to bird reproduction. Results indicate that mercury contamination of birds is prevalent in many areas throughout western North America, and large-scale ecological attributes are important factors influencing bird mercury concentrations. PMID:27093907

Habitat planning, maintenance and management working group

DOE Office of Scientific and Technical Information (OSTI.GOV)

NONE

The Gulf of Mexico (GOM), called {open_quotes}America`s Sea,{close_quotes} is actually a small ocean basin covering over 1.5 million square kilometers. Because of the multiple uses, diversity, and size of the Gulf`s resources, management is shared by a number of governmental agencies including the Minerals Management Service, the Gulf of Mexico Fishery Management Council, the Gulf States Marine Fisheries Commission, National Marine Fisheries Service, the US Coast Guard, the US Army Corps of Engineers, and the five Gulf states fisheries agencies. All of these entities share a common goal of achieving optimum sustainable yield to maximize geological, biological, social, and economicmore » benefits from these resources. These entities also share a common theme that the successful management of the northern GOM requires maintenance and enhancement of both the quantity and quality of habitats. A closer look at the GOM shows the sediment to be clearly dominated by vast sand and mud plains. These soft bottom habitats are preferred by many groundfish and shrimp species and, thus, have given rise to large commercial fisheries on these stocks. Hard bottom and reef habitats, on the other hand, are limited to approximately 1.6% of the total area of the Gulf, so that, while there are high demands by commercial and recreational fishermen for reef associated species, the availability of habitat for these stocks is limited. The thousands of oil and gas structures placed in the Gulf have added significant amounts of new hard substrate. The rigs-to-reefs concept was a common sense idea with support from environmental user groups and the petroleum industry for preserving a limited but valuable habitat type. As long as maximizing long-term benefits from the Gulf s resources for the greatest number of users remains the goal, then programs such as Rigs-to-Reefs will remain an important tool for fisheries and habitat managers in the Gulf.« less

Movement trajectories and habitat partitioning of small mammals in logged and unlogged rain forests on Borneo.

PubMed

Wells, Konstans; Pfeiffer, Martin; Lakim, Maklarin B; Kalko, Elisabeth K V

2006-09-01

1. Non-volant animals in tropical rain forests differ in their ability to exploit the habitat above the forest floor and also in their response to habitat variability. It is predicted that specific movement trajectories are determined both by intrinsic factors such as ecological specialization, morphology and body size and by structural features of the surrounding habitat such as undergrowth and availability of supportive structures. 2. We applied spool-and-line tracking in order to describe movement trajectories and habitat segregation of eight species of small mammals from an assemblage of Muridae, Tupaiidae and Sciuridae in the rain forest of Borneo where we followed a total of 13,525 m path. We also analysed specific changes in the movement patterns of the small mammals in relation to habitat stratification between logged and unlogged forests. Variables related to climbing activity of the tracked species as well as the supportive structures of the vegetation and undergrowth density were measured along their tracks. 3. Movement patterns of the small mammals differed significantly between species. Most similarities were found in congeneric species that converged strongly in body size and morphology. All species were affected in their movement patterns by the altered forest structure in logged forests with most differences found in Leopoldamys sabanus. However, the large proportions of short step lengths found in all species for both forest types and similar path tortuosity suggest that the main movement strategies of the small mammals were not influenced by logging but comprised generally a response to the heterogeneous habitat as opposed to random movement strategies predicted for homogeneous environments. 4. Overall shifts in microhabitat use showed no coherent trend among species. Multivariate (principal component) analysis revealed contrasting trends for convergent species, in particular for Maxomys rajah and M. surifer as well as for Tupaia longipes and T. tana, suggesting that each species was uniquely affected in its movement trajectories by a multiple set of environmental and intrinsic features.

Evaluating physical habitat condition in the National Lakes Assessment (NLA)

EPA Science Inventory

The NLA and other lake survey and monitoring efforts increasingly rely upon biological assemblage data to define lake condition. Information concerning the multiple dimensions of physical and chemical habitat is necessary to interpret this biological information and meaningfully...

Suitability of Coastal Marshes as Whooping Crane Foraging Habitat in Southwest Louisiana, USA

USGS Publications Warehouse

King, Sammy L.; Kang, Sung-Ryong

2014-01-01

Foraging habitat conditions (i.e., water depth, prey biomass, digestible energy density) can be a significant predictor of foraging habitat selection by wading birds. Potential foraging habitats of Whooping Cranes (Grus americana) using marshes include ponds and emergent marsh, but the potential prey and energy availability in these habitat types have rarely been studied. In this study, we estimated daily digestible energy density for Whooping Cranes in different marsh and microhabitat types (i.e., pond, flooded emergent marsh). Also, indicator metrics of foraging habitat suitability for Whooping Cranes were developed based on seasonal water depth, prey biomass, and digestible energy density. Seasonal water depth (cm), prey biomass (g wet weight m-2), and digestible energy density (kcal g-1m-2) ranged from 0.0 to 50.2 ± 2.8, 0.0 to 44.8 ± 22.3, and 0.0 to 31.0 ± 15.3, respectively. With the exception of freshwater emergent marsh in summer, all available habitats were capable of supporting one Whooping Crane per 0.1 ha per day. All habitat types in the marshes had relatively higher suitability in spring and summer than in fall and winter. Our study indicates that based on general energy availability, freshwater marshes in the region can support Whooping Cranes in a relatively small area, particularly in spring and summer. In actuality, the spatial density of ponds, the flood depth of the emergent marsh, and the habitat conditions (e.g., vegetation density) between adjacent suitable habitats will constrain suitable habitat and Whooping Crane numbers.

Annual variation in habitat-specific recruitment success: Implications from an individual-based model of Lake Michigan alewife (Alosa pseudoharengus)

USGS Publications Warehouse

Hook, T.O.; Rutherford, E.S.; Croley, T.E.; Mason, D.M.; Madenjian, C.P.

2008-01-01

The identification of important spawning and nursery habitats for fish stocks can aid fisheries management, but is complicated by various factors, including annual variation in recruitment success. The alewife (Alosa pseudoharengus) is an ecologically important species in Lake Michigan that utilizes a variety of habitats for spawning and early life growth. While productive, warm tributary mouths (connected to Lake Michigan) may contribute disproportionately more recruits (relative to their habitat volume) to the adult alewife population than cooler, less productive nearshore habitats, the extent of interannual variation in the relative contributions of recruits from these two habitat types remains unknown. We used an individual-based bioenergetics simulation model and input data on daily temperatures to estimate alewife recruitment to the adult population by these different habitat types. Simulations suggest that nearshore lake habitats typically produce the vast majority of young alewife recruits. However, tributary habitats may contribute the majority of alewife recruits during years of low recruitment. We suggest that high interannual variation in the relative importance of habitats for recruitment is a common phenomenon, which should be considered when developing habitat management plans for fish populations. ?? 2008 NRC.

Effects of habitat management treatments on plant community composition and biomass in a Montane wetland

USGS Publications Warehouse

Austin, J.E.; Keough, J.R.; Pyle, W.H.

2007-01-01

Grazing and burning are commonly applied practices that can impact the diversity and biomass of wetland plant communities. We evaluated the vegetative response of wetlands and adjacent upland grasslands to four treatment regimes (continuous idle, fall prescribed burning followed by idle, annual fall cattle grazing, and rotation of summer grazing and idle) commonly used by the U.S. Fish and Wildlife Service. Our study area was Grays Lake, a large, montane wetland in southeastern Idaho that is bordered by extensive wet meadows. We identified seven plant cover types, representing the transition from dry meadow to deep wetland habitats: mixed deep marsh, spikerush slough, Baltic rush (Juncus balticus), moist meadow, alkali, mesic meadow, and dry meadow. We compared changes in community composition and total aboveground biomass of each plant cover type between 1998, when all units had been idled for three years, and 1999 (1 yr post-treatment) and 2000 (2 yr post-treatment). Analysis using non-metric multidimensional scaling indicated that compositional changes varied among cover types, treatments, and years following treatment. Treatment-related changes in community composition were greatest in mixed deep marsh, Baltic rush, and mesic meadow. In mixed deep marsh and Baltic rush, grazing and associated trampling contributed to changes in the plant community toward more open water and aquatic species and lower dominance of Baltic rush; grazing and trampling also seemed to contribute to increased cover in mesic meadow. Changing hydrological conditions, from multiple years of high water to increasing drought, was an important factor influencing community composition and may have interacted with management treatments. Biomass differed among treatments and between years within cover types. In the wettest cover types, fall burning and grazing rotation treatments had greater negative impact on biomass than the idle treatment, but in drier cover types, summer grazing stimulated biomass production. Our results illustrate the spatial and temporal complexity of the transition between dry meadow and wetland habitats, and variable interactions among plant communities, treatments, and annual wetland conditions. ?? 2007, The Society of Wetland Scientists.

Habitat-specific foraging of prothonotary warblers: Deducing habitat quality

USGS Publications Warehouse

Lyons, J.E.

2005-01-01

Foraging behavior often reflects food availability in predictable ways. For example, in habitats where food availability is high, predators should attack prey more often and move more slowly than in habitats where food availability is low. To assess relative food availability and habitat quality, I studied the foraging behavior of breeding Prothonotary Warblers (Protonotaria citrea) in two forest habitat types, cypress-gum swamp forest and coastal-plain levee forest. I quantified foraging behavior with focal animal sampling and continuous recording during foraging bouts. I measured two aspects of foraging behavior: 1) prey attack rate (attacks per minute), using four attack maneuvers (glean, sally, hover, strike), and 2) foraging speed (movements per minute), using three types of movement (hop, short flight [???1 m], long flight [>1 m]). Warblers attacked prey more often in cypress-gum swamp forest than in coastal-plain levee forest. Foraging speed, however, was not different between habitats. I also measured foraging effort (% time spent foraging) and relative frequency of attack maneuvers employed in each habitat; neither of these variables was influenced by forest type. I conclude that Prothonotary Warblers encounter more prey when foraging in cypress-gum swamps than in coastal-plain levee forest, and that greater food availability results in higher density and greater reproductive success for birds breeding in cypress-gum swamp.

Reproductive success of a keystone herbivore is more variable and responsive to climate in habitats with lower resource diversity.

PubMed

Iles, David T; Rockwell, Robert F; Koons, David N

2018-07-01

The effects of climate on wild populations are often channelled through species interactions. Population responses to climate variation can therefore differ across habitats, owing to variation in the biotic community. Theory predicts that consumer demography should be less variable and less responsive to climate in habitats with greater resource diversity. We tested these predictions using a long-term study of breeding lesser snow geese along the western coast of Hudson Bay, Manitoba, Canada. Reproductive success was measured in 22 years from 114 locations, in either coastal or inland habitat types. We used Bayesian analysis to estimate the response of reproductive success to climate in each habitat type, along with residual variation not explained by climate. We then quantified gosling diet composition in each habitat type to test the prediction that reproductive success would be less variable and more responsive to climate in habitats with lower resource diversity. Reproductive success responded positively to seasonal warmness, but this response was much stronger in inland habitats than in coastal habitats. Site- and year-level random effects were also three to five times more variable in inland habitats. Simultaneously, land cover diversity and gosling diet diversity were lower in inland habitats. Our study illustrates that spatial variation in resource diversity (and thus, species interactions) can have important effects on consumer responses to climate. In this system, climate change is expected to disproportionately increase the reproductive success of snow geese in vast inland habitats, potentially counteracting management efforts to reduce the abundance of this keystone herbivore. © 2018 The Authors. Journal of Animal Ecology © 2018 British Ecological Society.

A global analysis of bird plumage patterns reveals no association between habitat and camouflage.

PubMed

Somveille, Marius; Marshall, Kate L A; Gluckman, Thanh-Lan

2016-01-01

Evidence suggests that animal patterns (motifs) function in camouflage. Irregular mottled patterns can facilitate concealment when stationary in cluttered habitats, whereas regular patterns typically prevent capture during movement in open habitats. Bird plumage patterns have predominantly converged on just four types-mottled (irregular), scales, bars and spots (regular)-and habitat could be driving convergent evolution in avian patterning. Based on sensory ecology, we therefore predict that irregular patterns would be associated with visually noisy closed habitats and that regular patterns would be associated with open habitats. Regular patterns have also been shown to function in communication for sexually competing males to stand-out and attract females, so we predict that male breeding plumage patterns evolved in both open and closed habitats. Here, taking phylogenetic relatedness into account, we investigate ecological selection for bird plumage patterns across the class Aves. We surveyed plumage patterns in 80% of all avian species worldwide. Of these, 2,756 bird species have regular and irregular plumage patterns as well as habitat information. In this subset, we tested whether adult breeding/non-breeding plumages in each sex, and juvenile plumages, were associated with the habitat types found within the species' geographical distributions. We found no evidence for an association between habitat and plumage patterns across the world's birds and little phylogenetic signal. We also found that species with regular and irregular plumage patterns were distributed randomly across the world's eco-regions without being affected by habitat type. These results indicate that at the global spatial and taxonomic scale, habitat does not predict convergent evolution in bird plumage patterns, contrary to the camouflage hypothesis.

Habitat use of bonobos (Pan paniscus) at Wamba: Selection of vegetation types for ranging, feeding, and night-sleeping.

PubMed

Terada, Saeko; Nackoney, Janet; Sakamaki, Tetsuya; Mulavwa, Mbangi Norbert; Yumoto, Takakazu; Furuichi, Takeshi

2015-06-01

Understanding the habitat requirements of great apes is essential for effective conservation strategies. We examined annual habitat use of a bonobo group in the Wamba field site within the Luo Scientific Reserve, Democratic Republic of the Congo. Using satellite imagery, we categorized the group's ranging area into three forest types: (1) primary and old secondary forest (P/OS), (2) young secondary forest and agriculture (YS/Ag), and (3) swamp forest (Sw). We tracked the group for 1 year (2007-2008) and compared usage of the three forest types for ranging, feeding, and night-sleeping. We also recorded what the bonobos ate and monitored monthly fruit availability in each forest type. The group ranged and fed more often in P/OS and less often in YS/Ag and Sw than expected based on habitat availability. Also, the group slept mostly in P/OS (94% of nights monitored), but also in YS/Ag (1%), and Sw (5%). Fruit availability in P/OS had no significant effect on habitat selection, but the group fed in YS/Ag most often during the two months when fruits in P/OS were least abundant. In June, when fruit of Uapaca spp. (selectively eaten by bonobos) was generally abundant in Sw, the group mostly ranged and slept there. The bonobos fed most often on herbaceous plants in all three forest types. In Sw, the bonobos frequently ate mushrooms. Our results show that semi-open forest with abundant herbaceous plants such as YS/Ag could be an important feeding habitat and may provide fallback food for bonobos when fruits are scarce. Furthermore, Sw can serve seasonally as a main habitat to complement P/OS if adequate food resources and tree nesting opportunities are available. We conclude that bonobos use diverse habitats depending on their needs and we highlight the importance of minor-use habitats for sustaining populations of target species in conservation planning. © 2015 Wiley Periodicals, Inc.

Habitat usage by prairie grouse on the Sheyenne National Grasslands

Treesearch

Llewellyn L. Manske; William T. Barker

1988-01-01

Prairie grouse habitat usage was observed for six years. Spring and summer habitat usage was primarily in the upland and midland grassland habitat types. Habitat usage shifted during the fall and winter to cropland and associated tree shelterbelts. The switchgrass plant community was the primary concealment cover for nesting and roosting. Cropland and associated tree...

Stream habitat characteristics of fixed sites in the western Lake Michigan drainages, Wisconsin and Michigan, 1993-95

USGS Publications Warehouse

Fitzpatrick, F.A.; Giddings, E.M.

1997-01-01

Results from this study illustrate the need for collection of habitat data at multiple scales along with water-chemistry data for determining major influences on distribution of aquatic communities. These results also indicate the importance of collecting land use, geological, and geomorphic information at the drainage-basin level to adequately describe how natural and human factors influence local aquatic habitat conditions.

A graph-theory framework for evaluating landscape connectivity and conservation planning.

PubMed

Minor, Emily S; Urban, Dean L

2008-04-01

Connectivity of habitat patches is thought to be important for movement of genes, individuals, populations, and species over multiple temporal and spatial scales. We used graph theory to characterize multiple aspects of landscape connectivity in a habitat network in the North Carolina Piedmont (U.S.A). We compared this landscape with simulated networks with known topology, resistance to disturbance, and rate of movement. We introduced graph measures such as compartmentalization and clustering, which can be used to identify locations on the landscape that may be especially resilient to human development or areas that may be most suitable for conservation. Our analyses indicated that for songbirds the Piedmont habitat network was well connected. Furthermore, the habitat network had commonalities with planar networks, which exhibit slow movement, and scale-free networks, which are resistant to random disturbances. These results suggest that connectivity in the habitat network was high enough to prevent the negative consequences of isolation but not so high as to allow rapid spread of disease. Our graph-theory framework provided insight into regional and emergent global network properties in an intuitive and visual way and allowed us to make inferences about rates and paths of species movements and vulnerability to disturbance. This approach can be applied easily to assessing habitat connectivity in any fragmented or patchy landscape.

Trends in developed land cover adjacent to habitat for threatened salmon in Puget Sound, Washington, USA.

PubMed

Bartz, Krista K; Ford, Michael J; Beechie, Timothy J; Fresh, Kurt L; Pess, George R; Kennedy, Robert E; Rowse, Melinda L; Sheer, Mindi

2015-01-01

For widely distributed species at risk, such as Pacific salmon (Oncorhynchus spp.), habitat monitoring is both essential and challenging. Only recently have widespread monitoring programs been implemented for salmon habitat in the Pacific Northwest. Remote sensing data, such as Landsat images, are therefore a useful way to evaluate trends prior to the advent of species-specific habitat monitoring programs. We used annual (1986-2008) land cover maps created from Landsat images via automated algorithms (LandTrendr) to evaluate trends in developed (50-100% impervious) land cover in areas adjacent to five types of habitat utilized by Chinook salmon (O. tshawytscha) in the Puget Sound region of Washington State, U.S.A. For the region as a whole, we found significant increases in developed land cover adjacent to each of the habitat types evaluated (nearshore, estuary, mainstem channel, tributary channel, and floodplain), but the increases were small (<1% total increase from 1986 to 2008). For each habitat type, the increasing trend changed during the time series. In nearshore, mainstem, and floodplain areas, the rate of increase in developed land cover slowed in the latter portion of the time series, while the opposite occurred in estuary and tributary areas. Watersheds that were already highly developed in 1986 tended to have higher rates of development than initially less developed watersheds. Overall, our results suggest that developed land cover in areas adjacent to Puget Sound salmon habitat has increased only slightly since 1986 and that the rate of change has slowed near some key habitat types, although this has occurred within the context of a degraded baseline condition.

Trends in Developed Land Cover Adjacent to Habitat for Threatened Salmon in Puget Sound, Washington, U.S.A.

PubMed Central

Bartz, Krista K.; Ford, Michael J.; Beechie, Timothy J.; Fresh, Kurt L.; Pess, George R.; Kennedy, Robert E.; Rowse, Melinda L.; Sheer, Mindi

2015-01-01

For widely distributed species at risk, such as Pacific salmon (Oncorhynchus spp.), habitat monitoring is both essential and challenging. Only recently have widespread monitoring programs been implemented for salmon habitat in the Pacific Northwest. Remote sensing data, such as Landsat images, are therefore a useful way to evaluate trends prior to the advent of species-specific habitat monitoring programs. We used annual (1986-2008) land cover maps created from Landsat images via automated algorithms (LandTrendr) to evaluate trends in developed (50-100% impervious) land cover in areas adjacent to five types of habitat utilized by Chinook salmon (O. tshawytscha) in the Puget Sound region of Washington State, U.S.A. For the region as a whole, we found significant increases in developed land cover adjacent to each of the habitat types evaluated (nearshore, estuary, mainstem channel, tributary channel, and floodplain), but the increases were small (<1% total increase from 1986 to 2008). For each habitat type, the increasing trend changed during the time series. In nearshore, mainstem, and floodplain areas, the rate of increase in developed land cover slowed in the latter portion of the time series, while the opposite occurred in estuary and tributary areas. Watersheds that were already highly developed in 1986 tended to have higher rates of development than initially less developed watersheds. Overall, our results suggest that developed land cover in areas adjacent to Puget Sound salmon habitat has increased only slightly since 1986 and that the rate of change has slowed near some key habitat types, although this has occurred within the context of a degraded baseline condition. PMID:25923327

Habitat complexity influences fine scale hydrological processes and the incidence of stormwater runoff in managed urban ecosystems.

PubMed

Ossola, Alessandro; Hahs, Amy Kristin; Livesley, Stephen John

2015-08-15

Urban ecosystems have traditionally been considered to be pervious features of our cities. Their hydrological properties have largely been investigated at the landscape scale and in comparison with other urban land use types. However, hydrological properties can vary at smaller scales depending upon changes in soil, surface litter and vegetation components. Management practices can directly and indirectly affect each of these components and the overall habitat complexity, ultimately affecting hydrological processes. This study aims to investigate the influence that habitat components and habitat complexity have upon key hydrological processes and the implications for urban habitat management. Using a network of urban parks and remnant nature reserves in Melbourne, Australia, replicate plots representing three types of habitat complexity were established: low-complexity parks, high-complexity parks, and high-complexity remnants. Saturated soil hydraulic conductivity in low-complexity parks was an order of magnitude lower than that measured in the more complex habitat types, due to fewer soil macropores. Conversely, soil water holding capacity in low-complexity parks was significantly higher compared to the two more complex habitat types. Low-complexity parks would generate runoff during modest precipitation events, whereas high-complexity parks and remnants would be able to absorb the vast majority of rainfall events without generating runoff. Litter layers on the soil surface would absorb most of precipitation events in high-complexity parks and high-complexity remnants. To minimize the incidence of stormwater runoff from urban ecosystems, land managers could incrementally increase the complexity of habitat patches, by increasing canopy density and volume, preserving surface litter and maintaining soil macropore structure. Copyright © 2015 Elsevier Ltd. All rights reserved.

Unionid habitat and assemblage composition in coastal plain tributaries of the Flint River (Georgia)

USGS Publications Warehouse

Gagnon, P.; Michener, W.; Freeman, M.; Brim-Box, J.

2006-01-01

Effective conservation of mussels in streams of the lower Flint River basin, southwest Georgia, requires more rigorous understanding of mussel-habitat associations and factors shaping assemblage composition in stream reaches. We surveyed mussels and habitat conditions at 46 locations, and used regression, correlation and multivariate direct gradient analysis (Canonical Correspondence Analyses) to identify species-habitat relationships and characteristic species-assemblage types in Flint basin streams. Riparian wetland and catchment forest cover, average mid-channel depth, and drainage network position accounted for 49% of the variability in mussel species richness, 36% of the variability in unionid abundance, and 32% of the variability observed in Shannon-Wiener diversity across survey sites. Species were grouped into four assemblage types based on their habitat associations: large-river-riffle associates, slackwater associates, habitat generalists, and stream-run associates. Results are broadly concordant with anecdotal reports of mussel-habitat relationships and provide insight into the habitat conservation needs of mussels.

Effect of habitat and foraging height on bat activity in the coastal plain of South Carolina

Treesearch

Jennifer M. Menzel; Michael A. Menzel; John C. Kilgo; W. Mark Ford; John w. Edwards; Gary F. McCracken

2005-01-01

We conipared bat activity levels in the Coaslal Plain of South Carolina atnong 5 habitat types: forested riparian areas, clearcuts, young pine plantations, ature pine plantations, and pine savannas. We used time-expansion radio-microphones and integrated detectors to simultaneously monitor bat activity at 3 heights (30, 10, 2 mj in each habitat type. Variation in...

Riparian habitat on the Humboldt River, Deeth to Elko, Nevada

NASA Technical Reports Server (NTRS)

Price, K. P.; Ridd, M. K.

1983-01-01

A map inventory of the major habitat types existing along the Humbolt River riparian zone in Nevada is described. Through aerialphotography, 16 riparian habitats are mapped that describe the ecological relationships between soil and vegetation types, flooding and soil erosion, and the various management practices employed to date. The specific land and water management techniques and their impact on the environment are considered.

Evolutionary consequences of habitat loss for Pacific anadromous salmonids

PubMed Central

McClure, Michelle M; Carlson, Stephanie M; Beechie, Timothy J; Pess, George R; Jorgensen, Jeffrey C; Sogard, Susan M; Sultan, Sonia E; Holzer, Damon M; Travis, Joseph; Sanderson, Beth L; Power, Mary E; Carmichael, Richard W

2008-01-01

Large portions of anadromous salmonid habitat in the western United States has been lost because of dams and other blockages. This loss has the potential to affect salmonid evolution through natural selection if the loss is biased, affecting certain types of habitat differentially, and if phenotypic traits correlated with those habitat types are heritable. Habitat loss can also affect salmonid evolution indirectly, by reducing genetic variation and changing its distribution within and among populations. In this paper, we compare the characteristics of lost habitats with currently accessible habitats and review the heritability of traits which show correlations with habitat/environmental gradients. We find that although there is some regional variation, inaccessible habitats tend to be higher in elevation, wetter and both warmer in the summer and colder in the winter than habitats currently available to anadromous salmonids. We present several case studies that demonstrate either a change in phenotypic or life history expression or an apparent reduction in genetic variation associated with habitat blockages. These results suggest that loss of habitat will alter evolutionary trajectories in salmonid populations and Evolutionarily Significant Units. Changes in both selective regime and standing genetic diversity might affect the ability of these taxa to respond to subsequent environmental perturbations. Both natural and anthropogenic and should be considered seriously in developing management and conservation strategies. PMID:25567633

Evidence for ecological divergence across a mosaic of soil types in an Amazonian tropical tree: Protium subserratum (Burseraceae).

PubMed

Misiewicz, Tracy M; Fine, Paul V A

2014-05-01

Soil heterogeneity is an important driver of divergent natural selection in plants. Neotropical forests have the highest tree diversity on earth, and frequently, soil specialist congeners are distributed parapatrically. While the role of edaphic heterogeneity in the origin and maintenance of tropical tree diversity is unknown, it has been posited that natural selection across the patchwork of soils in the Amazon rainforest is important in driving and maintaining tree diversity. We examined genetic and morphological differentiation among populations of the tropical tree Protium subserratum growing parapatrically on the mosaic of white-sand, brown-sand and clay soils found throughout western Amazonia. Nuclear microsatellites and leaf morphology were used to (i) quantify the extent of phenotypic and genetic divergence across habitat types, (ii) assess the importance of natural selection vs. drift in population divergence, (iii) determine the extent of hybridization and introgression across habitat types, (iv) estimate migration rates among populations. We found significant morphological variation correlated with soil type. Higher levels of genetic differentiation and lower migration rates were observed between adjacent populations found on different soil types than between geographically distant populations on the same soil type. PST -FST comparisons indicate a role for natural selection in population divergence among soil types. A small number of hybrids were detected suggesting that gene flow among soil specialist populations may occur at low frequencies. Our results suggest that edaphic specialization has occurred multiple times in P. subserratum and that divergent natural selection across edaphic boundaries may be a general mechanism promoting and maintaining Amazonian tree diversity. © 2014 John Wiley & Sons Ltd.

Are Regional Habitat Models Useful at a Local-Scale? A Case Study of Threatened and Common Insectivorous Bats in South-Eastern Australia

PubMed Central

McConville, Anna; Law, Bradley S.; Mahony, Michael J.

2013-01-01

Habitat modelling and predictive mapping are important tools for conservation planning, particularly for lesser known species such as many insectivorous bats. However, the scale at which modelling is undertaken can affect the predictive accuracy and restrict the use of the model at different scales. We assessed the validity of existing regional-scale habitat models at a local-scale and contrasted the habitat use of two morphologically similar species with differing conservation status (Mormopterus norfolkensis and Mormopterus species 2). We used negative binomial generalised linear models created from indices of activity and environmental variables collected from systematic acoustic surveys. We found that habitat type (based on vegetation community) best explained activity of both species, which were more active in floodplain areas, with most foraging activity recorded in the freshwater wetland habitat type. The threatened M. norfolkensis avoided urban areas, which contrasts with M. species 2 which occurred frequently in urban bushland. We found that the broad habitat types predicted from local-scale models were generally consistent with those from regional-scale models. However, threshold-dependent accuracy measures indicated a poor fit and we advise caution be applied when using the regional models at a fine scale, particularly when the consequences of false negatives or positives are severe. Additionally, our study illustrates that habitat type classifications can be important predictors and we suggest they are more practical for conservation than complex combinations of raw variables, as they are easily communicated to land managers. PMID:23977296

Habitat stability, predation risk and 'memory syndromes'.

PubMed

Dalesman, S; Rendle, A; Dall, S R X

2015-05-27

Habitat stability and predation pressure are thought to be major drivers in the evolutionary maintenance of behavioural syndromes, with trait covariance only occurring within specific habitats. However, animals also exhibit behavioural plasticity, often through memory formation. Memory formation across traits may be linked, with covariance in memory traits (memory syndromes) selected under particular environmental conditions. This study tests whether the pond snail, Lymnaea stagnalis, demonstrates consistency among memory traits ('memory syndrome') related to threat avoidance and foraging. We used eight populations originating from three different habitat types: i) laboratory populations (stable habitat, predator-free); ii) river populations (fairly stable habitat, fish predation); and iii) ditch populations (unstable habitat, invertebrate predation). At a population level, there was a negative relationship between memories related to threat avoidance and food selectivity, but no consistency within habitat type. At an individual level, covariance between memory traits was dependent on habitat. Laboratory populations showed no covariance among memory traits, whereas river populations showed a positive correlation between food memories, and ditch populations demonstrated a negative relationship between threat memory and food memories. Therefore, selection pressures among habitats appear to act independently on memory trait covariation at an individual level and the average response within a population.

Large-scale habitat associations of four desert anurans in Big Bend National Park, Texas

USGS Publications Warehouse

Dayton, Gage H.; Jung, R.E.; Droege, S.

2004-01-01

We used night driving to examine large scale habitat associations of four common desert anurans in Big Bend National Park, Texas. We examined association of soil types and vegetation communities with abundance of Couch's Spadefoots (Scaphiopus couchii), Red-spotted Toads (Bufo punctatus), Texas Toads (Bufo speciosus), and Western Green Toads (Bufo debilis). All four species were disproportionately associated with frequently inundated soils that are relatively high in clay content. Bufo punctatus was associated with rocky soil types more frequently than the other three species. Association between all four species and vegetation types was disproportionate in relation to availability. Bufo debilis and Bufo punctatus were associated with creosote and mixed scrub vegetation. Bufo speciosus and Scaphiopus couchii were associated with mesquite scrub vegetation. Bufo debilis, Scaphiopus couchii, and B. speciosus were more tightly associated with specific habitat types, whereas B. punctatus exhibited a broader distribution across the habitat categories. Examining associations between large-scale habitat categories and species abundance is an important first step in understanding factors that influence species distributions and presence-absence across the landscape.

Selecting habitat to survive: the impact of road density on survival in a large carnivore.

PubMed

Basille, Mathieu; Van Moorter, Bram; Herfindal, Ivar; Martin, Jodie; Linnell, John D C; Odden, John; Andersen, Reidar; Gaillard, Jean-Michel

2013-01-01

Habitat selection studies generally assume that animals select habitat and food resources at multiple scales to maximise their fitness. However, animals sometimes prefer habitats of apparently low quality, especially when considering the costs associated with spatially heterogeneous human disturbance. We used spatial variation in human disturbance, and its consequences on lynx survival, a direct fitness component, to test the Hierarchical Habitat Selection hypothesis from a population of Eurasian lynx Lynx lynx in southern Norway. Data from 46 lynx monitored with telemetry indicated that a high proportion of forest strongly reduced the risk of mortality from legal hunting at the home range scale, while increasing road density strongly increased such risk at the finer scale within the home range. We found hierarchical effects of the impact of human disturbance, with a higher road density at a large scale reinforcing its negative impact at a fine scale. Conversely, we demonstrated that lynx shifted their habitat selection to avoid areas with the highest road densities within their home ranges, thus supporting a compensatory mechanism at fine scale enabling lynx to mitigate the impact of large-scale disturbance. Human impact, positively associated with high road accessibility, was thus a stronger driver of lynx space use at a finer scale, with home range characteristics nevertheless constraining habitat selection. Our study demonstrates the truly hierarchical nature of habitat selection, which aims at maximising fitness by selecting against limiting factors at multiple spatial scales, and indicates that scale-specific heterogeneity of the environment is driving individual spatial behaviour, by means of trade-offs across spatial scales.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Scolozzi, Rocco, E-mail: rocco.scolozzi@fmach.it; Geneletti, Davide, E-mail: geneletti@ing.unitn.it

Habitat loss and fragmentation are often concurrent to land conversion and urbanization. Simple application of GIS-based landscape pattern indicators may be not sufficient to support meaningful biodiversity impact assessment. A review of the literature reveals that habitat definition and habitat fragmentation are frequently inadequately considered in environmental assessment, notwithstanding the increasing number of tools and approaches reported in the landscape ecology literature. This paper presents an approach for assessing impacts on habitats on a local scale, where availability of species data is often limited, developed for an alpine valley in northern Italy. The perspective of the methodology is multiple scalemore » and species-oriented, and provides both qualitative and quantitative definitions of impact significance. A qualitative decision model is used to assess ecological values in order to support land-use decisions at the local level. Building on recent studies in the same region, the methodology integrates various approaches, such as landscape graphs, object-oriented rule-based habitat assessment and expert knowledge. The results provide insights into future habitat loss and fragmentation caused by land-use changes, and aim at supporting decision-making in planning and suggesting possible ecological compensation. - Highlights: Black-Right-Pointing-Pointer Many environmental assessments inadequately consider habitat loss and fragmentation. Black-Right-Pointing-Pointer Species-perspective for defining habitat quality and connectivity is claimed. Black-Right-Pointing-Pointer Species-based tools are difficult to be applied with limited availability of data. Black-Right-Pointing-Pointer We propose a species-oriented and multiple scale-based qualitative approach. Black-Right-Pointing-Pointer Advantages include being species-oriented and providing value-based information.« less

ASSESSING THE EFFECTS OF HABITAT ALTERATION ON THE BAY SCALLOP, ARGOPECTEN IRRADIANS

EPA Science Inventory

The U.S. EPA's National Health and Environmental Effects Laboratory is evaluating approaches for protecting and restoring the ecological integrity of aquatic habitats, such as marine wetlands and coastal zones, from the impacts of multiple aquatic stressors. We are developing ha...

76 FR 41510 - Draft Environmental Impact Statement and Habitat Conservation Plan for Commercial Wind Energy...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-14

...] Draft Environmental Impact Statement and Habitat Conservation Plan for Commercial Wind Energy... regional- level construction, operation, and maintenance associated with multiple commercial wind energy...; Attention: Laila Lienesch; Facsimile: 505/248-6922 (Attention: Laila Lienesch); E-Mail: WindEnergy...

Overwintering Habitats of Migratory Juvenile American Shad in Chesapeake Bay

EPA Science Inventory

We describe overwintering habitats of age-0 American shad in the lower Chesapeake Bay estuary through analyses of multiple, complementary data sets, including bottom-trawls of the Virginia portion of Chesapeake Bay and its tributaries, stable isotope analysis of American shad a...

Wildlife in the Upper Great Lakes Region: a community profile.

Treesearch

Janine M. Benyus; Richard R. Buech; Mark D. Nelson

1992-01-01

Wildlife habitat data from seven Great Lakes National Forests were combined into a wildlife-habitat matrix named NORTHWOODS. The composite NORTHWOODS data base is summarized. Multiple queries of NORTHWOODS were used to profile the wildlife community of the Upper Great Lakes region.

The effects of larval habitat quality on Aedes albopictus skip oviposition

USDA-ARS?s Scientific Manuscript database

Aedes albopictus, an invasive mosquito species that transmits disease-causing pathogens, oviposits in containers in resource-limited habitats. To mitigate larval competition, Ae. albopictus females may choose to distribute eggs from a single gonotrophic cycle among multiple containers through skip o...

Hydrologic connection between ponds positively affects macrophyte alpha and gamma diversity but negatively affects beta diversity.

PubMed

Akasaka, Munemitsu; Takamura, Noriko

2012-05-01

Connections between habitat patches can positively influence the number of species in respective patches, providing a basis for preferentially conserving interconnected patches. However, from a regional perspective, it is not known whether conserving multiple sets of interconnected habitat patches would include more species (i.e., show higher gamma diversity) than conserving multiple, unconnected, solitary patches. We studied aquatic macrophytes in 15 sets of unidirectionally interconnected ponds and 19 unconnected ponds and also tested whether alpha and beta diversity, expressed as the number of species and dissimilarity in species composition, respectively, differed between connected and unconnected ponds. We found that gamma diversity was higher in connected ponds than in unconnected ponds, even after controlling for surface area. This resulted from a higher alpha diversity in connected ponds, despite lower beta diversity. These results suggest that connections between habitat patches positively influence diversity at both local and regional scales. When the total surface area available for conservation is limited, interconnected habitat patches should be preferentially conserved.

Dynamics of population densities and vegetation associations of Anopheles albimanus larvae in a coastal area of southern Chiapas, Mexico.

PubMed

Rodríguez, A D; Rodríguez, M H; Meza, R A; Hernández, J E; Rejmankova, E; Savage, H M; Roberts, D R; Pope, K O; Legters, L

1993-03-01

Spatial and seasonal variations on Anopheles albimanus larval densities and their plant associations were investigated in larval habitats in southern Mexico between April 1989 and May 1990. Thirty-four plant groups were dominant in larval habitats. Dense larval populations were associated with 3 genera of plants, Cynodon, Echinocloa and Fimbristylis and no larvae were found in habitats with Salvinia and Rhizophora. Low significant positive or negative associations were documented with the other 12 plant genera. Larval habitats were classified according to the morphology of their dominant plants. Higher larval densities were observed in the groups characterized by relatively short emergent vegetation. The distribution of habitat-types within 5 identified vegetation units showed a significantly dependent relationship. For the entire study period, highest larval densities were detected in flooded pasture/grassland vegetation units. For all vegetation units, higher larval densities were found when the dominant plant type covered between 25-50% of the breeding site. The integration of data from habitat-types into vegetation units did not result in loss of information.

Multi-scale Homogenization of Caddisfly Metacomminities in Human-modified Landscapes

NASA Astrophysics Data System (ADS)

Simião-Ferreira, Juliana; Nogueira, Denis Silva; Santos, Anna Claudia; De Marco, Paulo; Angelini, Ronaldo

2018-04-01

The multiple scale of stream networks spatial organization reflects the hierarchical arrangement of streams habitats with increasingly levels of complexity from sub-catchments until entire hydrographic basins. Through these multiple spatial scales, local stream habitats form nested subsets of increasingly landscape scale and habitat size with varying contributions of both alpha and beta diversity for the regional diversity. Here, we aimed to test the relative importance of multiple nested hierarchical levels of spatial scales while determining alpha and beta diversity of caddisflies in regions with different levels of landscape degradation in a core Cerrado area in Brazil. We used quantitative environmental variables to test the hypothesis that landscape homogenization affects the contribution of alpha and beta diversity of caddisflies to regional diversity. We found that the contribution of alpha and beta diversity for gamma diversity varied according to landscape degradation. Sub-catchments with more intense agriculture had lower diversity at multiple levels, markedly alpha and beta diversities. We have also found that environmental predictors mainly associated with water quality, channel size, and habitat integrity (lower scores indicate stream degradation) were related to community dissimilarity at the catchment scale. For an effective management of the headwater biodiversity of caddisfly, towards the conservation of these catchments, heterogeneous streams with more pristine riparian vegetation found within the river basin need to be preserved in protected areas. Additionally, in the most degraded areas the restoration of riparian vegetation and size increase of protected areas will be needed to accomplish such effort.

Evolution of leaf anatomy in arid environments - A case study in southern African Tetraena and Roepera (Zygophyllaceae).

PubMed

Lauterbach, Maximilian; van der Merwe, Pieter de Wet; Keßler, Lisa; Pirie, Michael D; Bellstedt, Dirk U; Kadereit, Gudrun

2016-04-01

The dry biomes of southern Africa (Desert, Nama Karoo and Succulent Karoo) are home to a rich and diverse xerophytic flora. This flora includes two morphologically diverse clades of Zygophyllaceae, Tetraena and Roepera (Zygophylloideae), which inhabit some of the most arid habitats in the region. Using a plastid phylogeny of Zygophylloideae we assess whether the evolution of putatively adaptive traits (leaf shape, vasculature, mode of water storage and photosynthetic type: C3 versus C4) coincides with the successful colonisation of environments with different drought regimes within southern Africa. Our results show general niche conservatism within arid habitats in Tetraena, but niche shifts from arid to more mesic biomes with longer and/or cooler growing season (Fynbos and Thicket) in Roepera. However, these distinct broad-scale biogeographical patterns are not reflected in leaf anatomy, which seems to vary at more local scales. We observed considerable variability and multiple convergences to similar leaf anatomies in both genera, including shifts between "all cell succulence" leaf types and leaf types with distinct chlorenchyma and hydrenchyma. Our survey of C4 photosynthesis in the Zygophylloideae showed that the C4 pathway is restricted to Tetraena simplex, which also having an annual life history and a widespread distribution, is rather atypical for this group. Copyright © 2016 Elsevier Inc. All rights reserved.

Contrasts in short- and long-term responses of Mediterranean reptile species to fire and habitat structure.

PubMed

Santos, Xavier; Badiane, Arnaud; Matos, Cátia

2016-01-01

Changes in habitat structure constitute a major factor explaining responses of reptiles to fire. However, few studies have examined habitat factors that covary with fire-history variables to explain reptile responses. We hypothesise that more complex habitats should support richer reptile communities, and that species-specific relative abundance should be related to particular habitat features. From spring 2012-2014, twenty-five transects were surveyed in the Albera Region (north-east Iberia). The vegetation structure was measured and the extent of habitat types in a 1000-m buffer around each transect calculated. Reptile-community metrics (species richness and reptile abundance) were related to fire history, vegetation structure, and habitat types, using generalized additive models. These metrics correlated with habitat-structure variables but not with fire history. The number of species increased with more complex habitats but decreased with pine-plantation abundance in the 1000-m buffer. We found contrasting responses among reptiles in terms of time since fire and those responses differed according to vegetation variables and habitat types. An unplanned fire in August 2012 provided the opportunity to compare reptile abundance values between pre-fire and the short term (1-2 years) after the fire. Most species exhibited a negative short-term response to the 2012 fire except Tarentola mauritanica, a gecko that inhabits large rocks, as opposed to other ground-dwelling species. In the reptiles studied, contrasting responses to time since fire are consistent with the habitat-accommodation model of succession. These differences are linked to specific microhabitat preferences and suggest that functional traits can be used to predict species-specific responses to fire.

Habitat associations and distribution of the hyperbenthic shrimp, Nauticaris marionis, around the sub-Antarctic Prince Edward Islands

NASA Astrophysics Data System (ADS)

Haley, Craig; von der Meden, Charles; Atkinson, Lara; Reed, Cecile

2017-09-01

The association of organisms with particular habitats and habitat-forming organisms, can strongly influence species distributions, interactions and wider ecosystem services. At the sub-Antarctic Prince Edward Islands, the caridean shrimp Nauticaris marionis is a principal part of the benthic ecosystem, occurring between ca. 50 m and 600 m. Its role as a trophic link between the primary productivity and higher predators is established, but little is understood of its in situ habitat usage and associations or of how these structure patterns of abundance. We investigated these aspects directly using a benthic camera sled, sampling 27 stations between 50 m and 500 m. Substratum type was characterised, and estimates of percentage cover of the 13 main groups of habitat-forming epibenthic taxa were made, alongside absolute counts of N. marionis within 'digital quadrats' drawn from 300 m transects. The distribution of N. marionis was influenced by depth, substratum type and overall biogenic cover, being limited to habitats between 50 and 160 m depth on mud or gravel substrata only, and having > 50% biogenic cover. The presence/absence of N. marionis related to significantly different epibenthic assemblages (termed biogenic habitats), but this effect was contingent on depth. Likewise, densities of N. marionis were significantly affected by biogenic habitat type, identifying an association with two biogenic habitat groups, one dominated by red-algae, the other by structurally complex bryozoan species. These associations likely relate to the structural complexity of the two habitat groups, rather than the specific taxa involved. The apparent absence of N. marionis at depths > 160 m contrasts with earlier records and poses questions about the trophic importance of the shrimp in deeper habitats.

Habitat choice by juvenile cod ( Gadus morhua L.) on sandy soft bottoms with different vegetation types

NASA Astrophysics Data System (ADS)

Borg, Å.; Pihl, L.; Wennhage, H.

1997-08-01

Habitat choice by juvenile cod ( Gadus morhua L.) on sandy bottoms with different vegetation types was studied in laboratory. The experiment was conducted day and night in flow-through tanks on two different size-classes of cod (7-13 and 17-28 cm TL). Four habitats, typical of shallow soft bottoms on the Swedish west coast: Fucus vesiculosus, Zostera marina, Cladophora sp. and bare sand, were set up pair-wise in six combinations. The main difference between habitats in this study was vegetation structure, since all parameters except vegetation type was considered equal for both sides of the experimental tanks and natural prey was eliminated. The results showed a difference in habitat utilization by juvenile cod between day (light) and night (dark). During day time the fishes showed a significant preference for vegetation, while nocturnally no significant choice of habitat was made. Both size-classes preferred Fucus, considered the most complex habitat in this study, when this was available. The smaller size-class seemed to be able to utilize the other vegetation types as well, always preferring vegetation over sand. Larger juvenile cod, on the other hand, appeared to be restricted to Fucus. This difference in habitat choice by the two size-classes might be due to a greater dependence on shelter from predation by the smaller juveniles, causing them to associate more strongly with vegetation. The larger juveniles avoided Cladophora, since they might have difficulties in entering the compact structure of this filamentous algae. Availability of vegetation at day time, as a predation refuge, as well as of open sandy areas for feeding during night, thus seems to be important for juvenile cod. It is concluded that eutrophication-induced changes in habitat structure, such as increased dominance by filamentous algae, could alter the availability of predation refuges and foraging habitats for juvenile cod.

Variation of stream temperature among mesoscale habitats within stream reaches: southern Appalachians

Treesearch

S. Lynsey Long; C. Rhett. Jackson

2014-01-01

Stream mesoscale habitats have systematic topographic relationships to hyporheic flow patterns, which may create predictable temperature variation between mesoscale habitat types. We investigated whether systematic differences in temperature metrics occurred between mesoscale habitats within reaches of small streams tributary to the upper Little Tennessee River,...

Assessing the Wildlife Habitat Value of New England Salt Marshes: I. Model and Application

EPA Science Inventory

We developed an assessment model to quantify the wildlife habitat value of New England salt marshes based on marsh characteristics and the presence of habitat types that influence habitat use by terrestrial wildlife. Applying the model to12 salt marshes located in Narragansett B...

Variability in spatial and temporal occurrence of presettlement and settlement-stage fishes associated with shallow reefs.

PubMed

Pattrick, P; Strydom, N A

2017-03-01

Presettlement and settlement-stage fishes were studied in a large, log-spiral bay in temperate South Africa. The aim was to describe the assemblage composition, density and distribution associated with four types of habitats common to the bay: high profile reef, low profile reef, reef-associated sand and open sand spatially separated from reef. Samples were collected with both a plankton ring net and a light trap at each habitat type as part of a mixed-method approach. A total of 4084 presettlement and settlement-stage fishes belonging to 31 teleost families and 84 species were captured. Reef-associated sand and open sand habitats yielded higher species richness and diversity than the high and low-profile reef habitats. Engraulidae, Gobiidae, Clupeidae and Cynoglossidae were the dominant fish families captured with the ring net, while Engraulidae, Clupeidae, Carangidae and Clinidae were captured with the light trap. A temporal difference in the abundance of presettlement fishes occurred between the sampling periods with highest values recorded during the summer settlement period. Habitat type together with associated physico-chemical variables played a pivotal role in determining presettlement fish species composition, density and distribution across habitat types. © 2016 The Fisheries Society of the British Isles.

Chorological classification approach for species and ecosystem conservation practice

NASA Astrophysics Data System (ADS)

Rogova, T. V.; Kozevnikova, M. V.; Prokhorov, V. E.; Timofeeva, N. O.

2018-01-01

The habitat type allocation approach based on the EUNIS Habitat Classification and the JUICE version 7 software is used for the conservation of species and ecosystem biodiversity. Using the vegetation plots of the Vegetation Database of Tatarstan, included in the EVA (European Vegetation Archive) and GIVD (Global Index of Vegetation-plots Databases) types of habitats of dry meadows and steppes are distinguished by differing compositions of the leading families composing their flora - Asteraceae, Fabaceae, Poaceae and Rosaceae. E12a - Semi-dry perennial calcareous grassland, and E12b - Perennial calcareous grassland and basic steppes were identified. The selected group of relevés that do not correspond to any of the EUNIS types can be considered specific for ecotone forest-steppe landscapes of the southeast of the Republic of Tatarstan. In all types of studied habitats, rare and protected plant species are noted, most of which are South-East-European-Asian species.

Using satellite remote sensing to model and map the distribution of Bicknell's thrush (Catharus bicknelli) in the White Mountains of New Hampshire

NASA Astrophysics Data System (ADS)

Hale, Stephen Roy

Landsat-7 Enhanced Thematic Mapper satellite imagery was used to model Bicknell's Thrush (Catharus bicknelli) distribution in the White Mountains of New Hampshire. The proof-of-concept was established for using satellite imagery in species-habitat modeling, where for the first time imagery spectral features were used to estimate a species-habitat model variable. The model predicted rising probabilities of thrush presence with decreasing dominant vegetation height, increasing elevation, and decreasing distance to nearest Fir Sapling cover type. To solve the model at all locations required regressor estimates at every pixel, which were not available for the dominant vegetation height and elevation variables. Topographically normalized imagery features Normalized Difference Vegetation Index and Band 1 (blue) were used to estimate dominant vegetation height using multiple linear regression; and a Digital Elevation Model was used to estimate elevation. Distance to nearest Fir Sapling cover type was obtained for each pixel from a land cover map specifically constructed for this project. The Bicknell's Thrush habitat model was derived using logistic regression, which produced the probability of detecting a singing male based on the pattern of model covariates. Model validation using Bicknell's Thrush data not used in model calibration, revealed that the model accurately estimated thrush presence at probabilities ranging from 0 to <0.40 and from 0.50 to <0.60. Probabilities from 0.40 to <0.50 and greater than 0.60 significantly underestimated and overestimated presence, respectively. Applying the model to the study area illuminated an important implication for Bicknell's Thrush conservation. The model predicted increasing numbers of presences and increasing relative density with rising elevation, with which exists a concomitant decrease in land area. Greater land area of lower density habitats may account for more total individuals and reproductive output than higher density less abundant land area. Efforts to conserve areas of highest individual density under the assumption that density reflects habitat quality could target the smallest fraction of the total population.

Indicators: Physical Habitat Complexity

EPA Pesticide Factsheets

Physical habitat complexity measures the amount and variety of all types of cove at the water’s edge in lakes. In general, dense and varied shoreline habitat is able to support more diverse communities of aquatic life.

Applying network theory to prioritize multispecies habitat networks that are robust to climate and land-use change.

PubMed

Albert, Cécile H; Rayfield, Bronwyn; Dumitru, Maria; Gonzalez, Andrew

2017-12-01

Designing connected landscapes is among the most widespread strategies for achieving biodiversity conservation targets. The challenge lies in simultaneously satisfying the connectivity needs of multiple species at multiple spatial scales under uncertain climate and land-use change. To evaluate the contribution of remnant habitat fragments to the connectivity of regional habitat networks, we developed a method to integrate uncertainty in climate and land-use change projections with the latest developments in network-connectivity research and spatial, multipurpose conservation prioritization. We used land-use change simulations to explore robustness of species' habitat networks to alternative development scenarios. We applied our method to 14 vertebrate focal species of periurban Montreal, Canada. Accounting for connectivity in spatial prioritization strongly modified conservation priorities and the modified priorities were robust to uncertain climate change. Setting conservation priorities based on habitat quality and connectivity maintained a large proportion of the region's connectivity, despite anticipated habitat loss due to climate and land-use change. The application of connectivity criteria alongside habitat-quality criteria for protected-area design was efficient with respect to the amount of area that needs protection and did not necessarily amplify trade-offs among conservation criteria. Our approach and results are being applied in and around Montreal and are well suited to the design of ecological networks and green infrastructure for the conservation of biodiversity and ecosystem services in other regions, in particular regions around large cities, where connectivity is critically low. © 2017 Society for Conservation Biology.

Coastal vertebrate exposure to predicted habitat changes due to sea level rise

USGS Publications Warehouse

Hunter, Elizabeth A.; Nibbelink, Nathan P.; Alexander, Clark R.; Barrett, Kyle; Mengak, Lara F.; Guy, Rachel; Moore, Clinton; Cooper, Robert J.

2015-01-01

Sea level rise (SLR) may degrade habitat for coastal vertebrates in the Southeastern United States, but it is unclear which groups or species will be most exposed to habitat changes. We assessed 28 coastal Georgia vertebrate species for their exposure to potential habitat changes due to SLR using output from the Sea Level Affecting Marshes Model and information on the species’ fundamental niches. We assessed forecasted habitat change up to the year 2100 using three structural habitat metrics: total area, patch size, and habitat permanence. Almost all of the species (n = 24) experienced negative habitat changes due to SLR as measured by at least one of the metrics. Salt marsh and ocean beach habitats experienced the most change (out of 16 categorical land cover types) across the three metrics and species that used salt marsh extensively (rails and marsh sparrows) were ranked highest for exposure to habitat changes. Species that nested on ocean beaches (Diamondback Terrapins, shorebirds, and terns) were also ranked highly, but their use of other foraging habitats reduced their overall exposure. Future studies on potential effects of SLR on vertebrates in southeastern coastal ecosystems should focus on the relative importance of different habitat types to these species’ foraging and nesting requirements. Our straightforward prioritization approach is applicable to other coastal systems and can provide insight to managers on which species to focus resources, what components of their habitats need to be protected, and which locations in the study area will provide habitat refuges in the face of SLR.

Coastal Vertebrate Exposure to Predicted Habitat Changes Due to Sea Level Rise

NASA Astrophysics Data System (ADS)

Hunter, Elizabeth A.; Nibbelink, Nathan P.; Alexander, Clark R.; Barrett, Kyle; Mengak, Lara F.; Guy, Rachel K.; Moore, Clinton T.; Cooper, Robert J.

2015-12-01

Sea level rise (SLR) may degrade habitat for coastal vertebrates in the Southeastern United States, but it is unclear which groups or species will be most exposed to habitat changes. We assessed 28 coastal Georgia vertebrate species for their exposure to potential habitat changes due to SLR using output from the Sea Level Affecting Marshes Model and information on the species' fundamental niches. We assessed forecasted habitat change up to the year 2100 using three structural habitat metrics: total area, patch size, and habitat permanence. Almost all of the species ( n = 24) experienced negative habitat changes due to SLR as measured by at least one of the metrics. Salt marsh and ocean beach habitats experienced the most change (out of 16 categorical land cover types) across the three metrics and species that used salt marsh extensively (rails and marsh sparrows) were ranked highest for exposure to habitat changes. Species that nested on ocean beaches (Diamondback Terrapins, shorebirds, and terns) were also ranked highly, but their use of other foraging habitats reduced their overall exposure. Future studies on potential effects of SLR on vertebrates in southeastern coastal ecosystems should focus on the relative importance of different habitat types to these species' foraging and nesting requirements. Our straightforward prioritization approach is applicable to other coastal systems and can provide insight to managers on which species to focus resources, what components of their habitats need to be protected, and which locations in the study area will provide habitat refuges in the face of SLR.

Ecological periodic tables for benthic macrofaunal usage of estuarine habitats: Insights from a case study in Tillamook Bay, Oregon, USA

NASA Astrophysics Data System (ADS)

Ferraro, Steven P.; Cole, Faith A.

2012-05-01

This study validates the ecological relevance of estuarine habitat types to the benthic macrofaunal community and, together with previous similar studies, suggests they can serve as elements in ecological periodic tables of benthic macrofaunal usage in the bioregion. We compared benthic macrofaunal Bray-Curtis similarity and the means of eight benthic macrofaunal community measures across seven habitat types in Tillamook Bay, Oregon, USA: intertidal eelgrass (Zostera marina), dwarf eelgrass (Zostera japonica), oyster (Crassostrea gigas) ground culture, burrowing mud shrimp (Upogebia pugettensis), burrowing ghost shrimp (Neotrypaea californiensis), sand and subtidal. Benthic macrofaunal Bray-Curtis similarity differed among all the habitats except ghost shrimp and sand. The habitat rank order on mean benthic macrofaunal species richness, abundance and biomass was dwarf eelgrass ≈ oyster ≥ mud shrimp ≈ eelgrass > sand ≈ ghost shrimp ≈ subtidal. The benthic macrofaunal habitat usage pattern in Tillamook Bay was, with a few exceptions, similar to that in two other US Pacific Northwest estuaries. The exceptions indicate variants of eelgrass and ghost shrimp habitat that differ in benthic macrofaunal usage perhaps due to differences in the coarseness of the sand fraction of the sediments in which they live. The similarities indicate periodic benthic macrofaunal usage patterns across the other habitat types extend over a wider geographic scale and range of environmental conditions than previously known.

Grassland birds: An overview of threats and recommended management strategies

USGS Publications Warehouse

Vickery, P.D.; Herkert, J.R.; Knopf, F.L.; Ruth, J.; Keller, C.E.; Bonney, Rick; Pashley, David N.; Cooper, Robert; Niles, Larry

2000-01-01

Grassland ecosystems are dependent on periodic disturbance for habitat maintenance. Historically, grazing by native herbivores and prairie fires were the agents principally responsible for maintaining grassland areas. However, elimination of native herbivores, wide-spread fire suppression, and conversion for agriculture have greatly altered grasslands in the United States and Canada. Because of these landscape changes, many grassland birds are increasingly dependent on land managers for habitat creation, maintenance, and health. Grazing, prescribed burning, and mowing/haying are the most frequently used, and versatile, grassland management techniques. Grassland birds prefer a wide range of grass heights and densities, with some species preferring short sparse vegetation, and others preferring taller, more dense vegetation. Due to differences in species habitat preferences and regional differences in soils and floristics, the responses of individual grassland species to specific grassland management practices can be variable and often are regionally dependent. As a result, management of grassland areas is best directed toward the creation of a mosaic of grassland habitat types. This habitat mosaic is probably best maintained through some type of rotational management system in which sections of large grassland areas receive management on a regular schedule. Such a rotational system would provide a variety of habitat types in every year, would ensure the availability of suitable habitat for birds at either end of the grassland management spectrum, and also would provide habitat for birds whose preferences lie between these extremes.

Specialized morphology corresponds to a generalist diet: linking form and function in smashing mantis shrimp crustaceans.

PubMed

deVries, Maya S; Stock, Brian C; Christy, John H; Goldsmith, Gregory R; Dawson, Todd E

2016-10-01

Many animals are considered to be specialists because they have feeding structures that are fine-tuned for consuming specific prey. For example, "smasher" mantis shrimp have highly specialized predatory appendages that generate forceful strikes to break apart hard-shelled prey. Anecdotal observations suggest, however, that the diet of smashers may include soft-bodied prey as well. Our goal was to examine the diet breadth of the smasher mantis shrimp, Neogonodactylus bredini, to determine whether it has a narrow diet of hard-shelled prey. We combined studies of prey abundance, feeding behavior, and stable isotope analyses of diet in both seagrass and coral rubble to determine if N. bredini's diet was consistent across different habitat types. The abundances of hard-shelled and soft-bodied prey varied between habitats. In feeding experiments, N. bredini consumed both prey types. N. bredini consumed a range of different prey in the field as well and, unexpectedly, the stable isotope analysis demonstrated that soft-bodied prey comprised a large proportion (29-53 %) of the diet in both habitats. Using a Bayesian mixing model framework (MixSIAR), we found that this result held even when we used uninformative, or generalist, priors and informative priors reflecting a specialist diet on hard-shelled prey and prey abundances in the field. Thus, contrary to expectation, the specialized feeding morphology of N. bredini corresponds to a broad diet of both hard-shelled and soft-bodied prey. Using multiple lines of study to describe the natural diets of other presumed specialists may demonstrate that specialized morphology often broadens rather than narrows diet breadth.

Effects of multiple predator species on green treefrog (Hyla cinerea) tadpoles

USGS Publications Warehouse

Gunzburger, M.S.; Travis, J.

2005-01-01

Prey species that occur across a range of habitats may be exposed to variable communities of multiple predator species across habitats. Predicting the combined effects of multiple predators can be complex. Many experiments evaluating the effects of multiple predators on prey confound either variation in predator density with predator identity or variation in relative predator frequency with overall predation rates. We develop a new experimental design of factorial predator combinations that maintains a constant expected predation rate, under the null hypothesis of additive predator effects. We implement this design to evaluate the combined effects of three predator species (bass, aeshnid and libellulid odonate naiads) on mortality rate of a prey species, Hyla cinerea (Schneider, 1799) tadpoles, that occurs across a range of aquatic habitats. Two predator treatments (libellulid and aeshnid + libellulid) resulted in lower tadpole mortality than any of the other predator treatments. Variation in tadpole mortality across treatments was not related to coarse variation in microhabitat use, but was likely due to intraguild predation, which occurred in all predator treatments. Hyla cinerea tadpoles have constant, low survival values when exposed to many different combinations of predator species, and predation rate probably increases linearly with predator density.

Nationally consistent and easily-implemented approach to evaluate littoral-riparian habitat quality in lakes and reservoirs

EPA Science Inventory

The National Lakes Assessment (NLA) and other lake survey and monitoring efforts increasingly rely upon biological assemblage data to define lake condition. Information concerning the multiple dimensions of physical and chemical habitat is necessary to interpret this biological ...

Nestedness patterns of container-dwelling mosquitoes: Effects of larval habitat within variable terrestial matrices

EPA Science Inventory

Distributions of mosquito larvae likely are a consequence of multiple factors, although two commonly studied factors (quality of the larval environment and the terrestrial matrix in which these habitats reside) have rarely and simultaneously been varied in the field to understand...

CROSS-SCALE CORRELATIONS AND THE DESIGN AND ANALYSIS OF AVIAN HABITAT SELECTION STUDIES

EPA Science Inventory

It has long been suggested that birds select habitat hierarchically, progressing from coarser to finer spatial scales. This hypothesis, in conjunction with the realization that many organisms likely respond to environmental patterns at multiple spatial scales, has led to a large ...

Remote Sensing, GIS, and Vector-Borne Disease

NASA Technical Reports Server (NTRS)

Beck, Louisa R.

2001-01-01

The concept of global climate change encompasses more than merely an alteration in temperature; it also includes spatial and temporal covariations in precipitation and humidity, and more frequent occurrence of extreme weather events. The impact of these variations, which can occur at a variety of temporal and spatial scales, could have a direct impact on disease transmission through their environmental consequences for pathogen, vector, and host survival, as well as indirectly through human demographic and behavioral responses. New and future sensor systems will allow scientists to investigate the relationships between climate change and environmental risk factors at multiple spatial, temporal and spectral scales. Higher spatial resolution will provide better opportunities for mapping urban features previously only possible with high resolution aerial photography. These opportunities include housing quality (e.g., Chagas'disease, leishmaniasis) and urban mosquito habitats (e.g., dengue fever, filariasis, LaCrosse encephalitis). There are or will be many new sensors that have higher spectral resolution, enabling scientists to acquire more information about parameters such as soil moisture, soil type, better vegetation discrimination, and ocean color, to name a few. Although soil moisture content is now detectable using Landsat, the new thermal, shortwave infrared, and radar sensors will be able to provide this information at a variety of scales not achievable using Landsat. Soil moisture could become a key component in transmission risk models for Lyme disease (tick survival), helminthiases (worm habitat), malaria (vector-breeding habitat), and schistosomiasis (snail habitat).

Identifying Greater Sage-Grouse source and sink habitats for conservation planning in an energy development landscape.

PubMed

Kirol, Christopher P; Beck, Jeffrey L; Huzurbazar, Snehalata V; Holloran, Matthew J; Miller, Scott N

2015-06-01

Conserving a declining species that is facing many threats, including overlap of its habitats with energy extraction activities, depends upon identifying and prioritizing the value of the habitats that remain. In addition, habitat quality is often compromised when source habitats are lost or fragmented due to anthropogenic development. Our objective was to build an ecological model to classify and map habitat quality in terms of source or sink dynamics for Greater Sage-Grouse (Centrocercus urophasianus) in the Atlantic Rim Project Area (ARPA), a developing coalbed natural gas field in south-central Wyoming, USA. We used occurrence and survival modeling to evaluate relationships between environmental and anthropogenic variables at multiple spatial scales and for all female summer life stages, including nesting, brood-rearing, and non-brooding females. For each life stage, we created resource selection functions (RSFs). We weighted the RSFs and combined them to form a female summer occurrence map. We modeled survival also as a function of spatial variables for nest, brood, and adult female summer survival. Our survival-models were mapped as survival probability functions individually and then combined with fixed vital rates in a fitness metric model that, when mapped, predicted habitat productivity (productivity map). Our results demonstrate a suite of environmental and anthropogenic variables at multiple scales that were predictive of occurrence and survival. We created a source-sink map by overlaying our female summer occurrence map and productivity map to predict habitats contributing to population surpluses (source habitats) or deficits (sink habitat) and low-occurrence habitats on the landscape. The source-sink map predicted that of the Sage-Grouse habitat within the ARPA, 30% was primary source, 29% was secondary source, 4% was primary sink, 6% was secondary sink, and 31% was low occurrence. Our results provide evidence that energy development and avoidance of energy infrastructure were probably reducing the amount of source habitat within the ARPA landscape. Our source-sink map provides managers with a means of prioritizing habitats for conservation planning based on source and sink dynamics. The spatial identification of high value (i.e., primary source) as well as suboptimal (i.e., primary sink) habitats allows for informed energy development to minimize effects on local wildlife populations.

HABSEED: a Simple Spatially Explicit Meta-Populations Model Using Remote Sensing Derived Habitat Quality Data

NASA Astrophysics Data System (ADS)

Heumann, B. W.; Guichard, F.; Seaquist, J. W.

2005-05-01

The HABSEED model uses remote sensing derived NPP as a surrogate for habitat quality as the driving mechanism for population growth and local seed dispersal. The model has been applied to the Sahel region of Africa. Results show that the functional response of plants to habitat quality alters population distribution. Plants more tolerant of medium quality habitat have greater distributions to the North while plants requiring only the best habitat are limited to the South. For all functional response types, increased seed production results in diminishing returns. Functional response types have been related to life history tradeoffs and r-K strategies based on the results. Results are compared to remote sensing derived vegetation land cover.

N-dimensional hypervolumes to study stability of complex ecosystems

PubMed Central

Barros, Ceres; Thuiller, Wilfried; Georges, Damien; Boulangeat, Isabelle; Münkemüller, Tamara

2016-01-01

Although our knowledge on the stabilising role of biodiversity and on how it is affected by perturbations has greatly improved, we still lack a comprehensive view on ecosystem stability that is transversal to different habitats and perturbations. Hence, we propose a framework that takes advantage of the multiplicity of components of an ecosystem and their contribution to stability. Ecosystem components can range from species or functional groups, to different functional traits, or even the cover of different habitats in a landscape mosaic. We make use of n-dimensional hypervolumes to define ecosystem states and assess how much they shift after environmental changes have occurred. We demonstrate the value of this framework with a study case on the effects of environmental change on Alpine ecosystems. Our results highlight the importance of a multidimensional approach when studying ecosystem stability and show that our framework is flexible enough to be applied to different types of ecosystem components, which can have important implications for the study of ecosystem stability and transient dynamics. PMID:27282314

Use of cccupancy models to evaluate expert knowledge-based species-habitat relationships

USGS Publications Warehouse

Iglecia, Monica N.; Collazo, Jaime A.; McKerrow, Alexa

2012-01-01

Expert knowledge-based species-habitat relationships are used extensively to guide conservation planning, particularly when data are scarce. Purported relationships describe the initial state of knowledge, but are rarely tested. We assessed support in the data for suitability rankings of vegetation types based on expert knowledge for three terrestrial avian species in the South Atlantic Coastal Plain of the United States. Experts used published studies, natural history, survey data, and field experience to rank vegetation types as optimal, suitable, and marginal. We used single-season occupancy models, coupled with land cover and Breeding Bird Survey data, to examine the hypothesis that patterns of occupancy conformed to species-habitat suitability rankings purported by experts. Purported habitat suitability was validated for two of three species. As predicted for the Eastern Wood-Pewee (Contopus virens) and Brown-headed Nuthatch (Sitta pusilla), occupancy was strongly influenced by vegetation types classified as “optimal habitat” by the species suitability rankings for nuthatches and wood-pewees. Contrary to predictions, Red-headed Woodpecker (Melanerpes erythrocephalus) models that included vegetation types as covariates received similar support by the data as models without vegetation types. For all three species, occupancy was also related to sampling latitude. Our results suggest that covariates representing other habitat requirements might be necessary to model occurrence of generalist species like the woodpecker. The modeling approach described herein provides a means to test expert knowledge-based species-habitat relationships, and hence, help guide conservation planning.

Ecohydrology of seepage springs in an urban National Park

NASA Astrophysics Data System (ADS)

Knee, K.; Melone, J.; Friedel, B.; Fong, D.

2014-12-01

Shallow groundwater-fed seepage springs, also known as hypotelminorheic habitats, are found around the Washington, DC area, including in the George Washington Parkway, a National Park unit in northern Virginia. These springs differ from better-known vernal pools both in their hydrology and their ecology: because they are groundwater-fed, they are more resistant to drying out than vernal pools, and they harbor cave-adapted arthropod species including amphipods of the genus Stygobroumus. This project seeks to understand the ecohydrology of the hypotelminorheic habitats that support these species, some of which are endangered, and which comprise an important but underappreciated component of biodiversity in DC-area National Parks. Our study focuses on two hypotelminorheic habitats in the GW Parkway area and consists of three main components: (1) a weekly population census of Stygobroumus using multiple mark-recapture methodology, (2) weekly monitoring of dissolved radon, a tracer of groundwater discharge, as well as conductivity, dissolved oxygen, and pH, and (3) continuous logging of spring water temperature. This poster presents preliminary data from the Stygobroumus population census and explores how these animals may be affected by spring hydrology. Specifically, we use temperature, conductivity, radon activity and precipitation data from a nearby weather station to understand how the springs respond to episodic and seasonal variation in temperature, precipitation and groundwater seepage and how this affects Stygobromus populations. We also explore whether variations in Stygobromus counts reflect (1) active migration between the surficial spring and the larger subterranean habitat, or (2) passive flushing driven by groundwater discharge. Our results provide basic hydrologic data about a little-understood habitat type and will help managers protect Stygobromus in the urban park environment.

Shifting stream planform state decreases stream productivity yet increases riparian animal production.

PubMed

Venarsky, Michael P; Walters, David M; Hall, Robert O; Livers, Bridget; Wohl, Ellen

2018-05-01

In the Colorado Front Range (USA), disturbance history dictates stream planform. Undisturbed, old-growth streams have multiple channels and large amounts of wood and depositional habitat. Disturbed streams (wildfires and logging < 200 years ago) are single-channeled with mostly erosional habitat. We tested how these opposing stream states influenced organic matter, benthic macroinvertebrate secondary production, emerging aquatic insect flux, and riparian spider biomass. Organic matter and macroinvertebrate production did not differ among sites per unit area (m -2 ), but values were 2 ×-21 × higher in undisturbed reaches per unit of stream valley (m -1 valley) because total stream area was higher in undisturbed reaches. Insect emergence was similar among streams at the per unit area and per unit of stream valley. However, rescaling insect emergence to per meter of stream bank showed that the emerging insect biomass reaching the stream bank was lower in undisturbed sites because multi-channel reaches had 3 × more stream bank than single-channel reaches. Riparian spider biomass followed the same pattern as emerging aquatic insects, and we attribute this to bottom-up limitation caused by the multi-channeled undisturbed sites diluting prey quantity (emerging insects) reaching the stream bank (riparian spider habitat). These results show that historic landscape disturbances continue to influence stream and riparian communities in the Colorado Front Range. However, these legacy effects are only weakly influencing habitat-specific function and instead are primarily influencing stream-riparian community productivity by dictating both stream planform (total stream area, total stream bank length) and the proportional distribution of specific habitat types (pools vs riffles).

Shifting stream planform state decreases stream productivity yet increases riparian animal production

USGS Publications Warehouse

Venarsky, Michael P.; Walters, David M.; Hall, Robert O.; Livers, Bridget; Wohl, Ellen

2018-01-01

In the Colorado Front Range (USA), disturbance history dictates stream planform. Undisturbed, old-growth streams have multiple channels and large amounts of wood and depositional habitat. Disturbed streams (wildfires and logging < 200 years ago) are single-channeled with mostly erosional habitat. We tested how these opposing stream states influenced organic matter, benthic macroinvertebrate secondary production, emerging aquatic insect flux, and riparian spider biomass. Organic matter and macroinvertebrate production did not differ among sites per unit area (m−2), but values were 2 ×–21 × higher in undisturbed reaches per unit of stream valley (m−1 valley) because total stream area was higher in undisturbed reaches. Insect emergence was similar among streams at the per unit area and per unit of stream valley. However, rescaling insect emergence to per meter of stream bank showed that the emerging insect biomass reaching the stream bank was lower in undisturbed sites because multi-channel reaches had 3 × more stream bank than single-channel reaches. Riparian spider biomass followed the same pattern as emerging aquatic insects, and we attribute this to bottom-up limitation caused by the multi-channeled undisturbed sites diluting prey quantity (emerging insects) reaching the stream bank (riparian spider habitat). These results show that historic landscape disturbances continue to influence stream and riparian communities in the Colorado Front Range. However, these legacy effects are only weakly influencing habitat-specific function and instead are primarily influencing stream–riparian community productivity by dictating both stream planform (total stream area, total stream bank length) and the proportional distribution of specific habitat types (pools vs riffles).

Habitat and Vegetation Variables Are Not Enough When Predicting Tick Populations in the Southeastern United States

PubMed Central

Trout Fryxell, R. T.; Moore, J. E.; Collins, M. D.; Kwon, Y.; Jean-Philippe, S. R.; Schaeffer, S. M.; Odoi, A.; Kennedy, M.; Houston, A. E.

2015-01-01

Two tick-borne diseases with expanding case and vector distributions are ehrlichiosis (transmitted by Amblyomma americanum) and rickettiosis (transmitted by A. maculatum and Dermacentor variabilis). There is a critical need to identify the specific habitats where each of these species is likely to be encountered to classify and pinpoint risk areas. Consequently, an in-depth tick prevalence study was conducted on the dominant ticks in the southeast. Vegetation, soil, and remote sensing data were used to test the hypothesis that habitat and vegetation variables can predict tick abundances. No variables were significant predictors of A. americanum adult and nymph tick abundance, and no clustering was evident because this species was found throughout the study area. For A. maculatum adult tick abundance was predicted by NDVI and by the interaction between habitat type and plant diversity; two significant population clusters were identified in a heterogeneous area suitable for quail habitat. For D. variabilis no environmental variables were significant predictors of adult abundance; however, D. variabilis collections clustered in three significant areas best described as agriculture areas with defined edges. This study identified few landscape and vegetation variables associated with tick presence. While some variables were significantly associated with tick populations, the amount of explained variation was not useful for predicting reliably where ticks occur; consequently, additional research that includes multiple sampling seasons and locations throughout the southeast are warranted. This low amount of explained variation may also be due to the use of hosts for dispersal, and potentially to other abiotic and biotic variables. Host species play a large role in the establishment, maintenance, and dispersal of a tick species, as well as the maintenance of disease cycles, dispersal to new areas, and identification of risk areas. PMID:26656122

Development of tiger habitat suitability model using geospatial tools-a case study in Achankmar Wildlife Sanctuary (AMWLS), Chhattisgarh India.

PubMed

Singh, R; Joshi, P K; Kumar, M; Dash, P P; Joshi, B D

2009-08-01

Geospatial tools supported by ancillary geo-database and extensive fieldwork regarding the distribution of tiger and its prey in Anchankmar Wildlife Sanctuary (AMWLS) were used to build a tiger habitat suitability model. This consists of a quantitative geographical information system (GIS) based approach using field parameters and spatial thematic information. The estimates of tiger sightings, its prey sighting and predicted distribution with the assistance of contextual environmental data including terrain, road network, settlement and drainage surfaces were used to develop the model. Eight variables in the dataset viz., forest cover type, forest cover density, slope, aspect, altitude, and distance from road, settlement and drainage were seen as suitable proxies and were used as independent variables in the analysis. Principal component analysis and binomial multiple logistic regression were used for statistical treatments of collected habitat parameters from field and independent variables respectively. The assessment showed a strong expert agreement between the predicted and observed suitable areas. A combination of the generated information and published literature was also used while building a habitat suitability map for the tiger. The modeling approach has taken the habitat preference parameters of the tiger and potential distribution of prey species into account. For assessing the potential distribution of prey species, independent suitability models were developed and validated with the ground truth. It is envisaged that inclusion of the prey distribution probability strengthens the model when a key species is under question. The results of the analysis indicate that tiger occur throughout the sanctuary. The results have been found to be an important input as baseline information for population modeling and natural resource management in the wildlife sanctuary. The development and application of similar models can help in better management of the protected areas of national interest.

Determinants of Mammal and Bird Species Richness in China Based on Habitat Groups

PubMed Central

Xu, Haigen; Cao, Mingchang; Wu, Jun; Cai, Lei; Ding, Hui; Lei, Juncheng; Wu, Yi; Cui, Peng; Chen, Lian; Le, Zhifang; Cao, Yun

2015-01-01

Understanding the spatial patterns in species richness is a central issue in macroecology and biogeography. Analyses that have traditionally focused on overall species richness limit the generality and depth of inference. Spatial patterns of species richness and the mechanisms that underpin them in China remain poorly documented. We created a database of the distribution of 580 mammal species and 849 resident bird species from 2376 counties in China and established spatial linear models to identify the determinants of species richness and test the roles of five hypotheses for overall mammals and resident birds and the 11 habitat groups among the two taxa. Our result showed that elevation variability was the most important determinant of species richness of overall mammal and bird species. It is indicated that the most prominent predictors of species richness varied among different habitat groups: elevation variability for forest and shrub mammals and birds, temperature annual range for grassland and desert mammals and wetland birds, net primary productivity for farmland mammals, maximum temperature of the warmest month for cave mammals, and precipitation of the driest quarter for grassland and desert birds. Noteworthily, main land cover type was also found to obviously influence mammal and bird species richness in forests, shrubs and wetlands under the disturbance of intensified human activities. Our findings revealed a substantial divergence in the species richness patterns among different habitat groups and highlighted the group-specific and disparate environmental associations that underpin them. As we demonstrate, a focus on overall species richness alone might lead to incomplete or misguided understanding of spatial patterns. Conservation priorities that consider a broad spectrum of habitat groups will be more successful in safeguarding the multiple services of biodiversity. PMID:26629903

Habitat diversity and ecosystem multifunctionality—The importance of direct and indirect effects

PubMed Central

Alsterberg, Christian; Roger, Fabian; Sundbäck, Kristina; Juhanson, Jaanis; Hulth, Stefan; Hallin, Sara; Gamfeldt, Lars

2017-01-01

Ecosystems worldwide are facing habitat homogenization due to human activities. Although it is commonly proposed that such habitat homogenization can have negative repercussions for ecosystem functioning, this question has yet to receive explicit scientific attention. We expand on the framework for evaluating the functional consequences of biodiversity loss by scaling up from the level of species to the level of the entire habitats. Just as species diversity generally fosters ecosystem functioning through positive interspecies interactions, we hypothesize that different habitats within ecosystems can facilitate each other through structural complementarity and through exchange of material and energy across habitats. We show that experimental ecosystems comprised of a diversity of habitats show higher levels of multiple ecosystem functions than ecosystems with low habitat diversity. Our results demonstrate that the effect of habitat diversity on multifunctionality varies with season; it has direct effects on ecosystem functioning in summer and indirect effects, via changes in species diversity, in autumn, but no effect in spring. We propose that joint consideration of habitat diversity and species diversity will prove valuable for both environmental management and basic research. PMID:28246634

Chapter 6. Landscape Analysis for Habitat Monitoring

Treesearch

Samuel A. Cushman; Kevin McGarigal; Kevin S. McKelvey; Christina D. Vojta; Claudia M. Regan

2013-01-01

The primary objective of this chapter is to describe standardized methods for measur¬ing and monitoring attributes of landscape pattern in support of habitat monitoring. This chapter describes the process of monitoring categorical landscape maps in which either selected habitat attributes or different classes of habitat quality are represented as different patch types...

Fuels planning: science synthesis and integration; environmental consequences fact sheet 15: The Wildlife Habitat Response Model

Treesearch

David Pilliod

2005-01-01

The Wildlife Habitat Response Model (WHRM) is a Web-based computer tool for evaluating the potential effects of fuel-reduction projects on terrestrial wildlife habitats. It uses species-habitat associations in ponderosa pine (Pinus ponderosa), dry-type Douglas-fir (Pseudotsuga menziesii), lodgepole pine (Pinus...

Cumulative impacts on seabed habitats: an indicator for assessments of good environmental status.

PubMed

Korpinen, Samuli; Meidinger, Manuel; Laamanen, Maria

2013-09-15

The European seas are under anthropogenic pressures impacting the state of water quality, benthic habitats and species. The EU Marine Strategy Framework Directive (MSFD) requires the Member States to assess the impacts of pressures and make a programme of measures leading to good environmental status (GES) by 2020. This study presents a method for assessing the quantity and distribution of anthropogenic impacts on benthic habitats in the Baltic Sea by using spatial data of human pressures and benthic habitats. The southern sub-basins were more extensively impacted than the northern sub-basins. Over the entire sea area, deep sea habitats were more impacted than shallower infralittoral and circalittoral habitats. Sand and coarse sediments were the seabed types relatively most impacted in the Baltic Sea scale. A comparison against tentative thresholds for GES showed that in the sub-basin scale only one third of the habitat types was in GES. Copyright © 2013 Elsevier Ltd. All rights reserved.

Biodiversity impact assessment (BIA+) - methodological framework for screening biodiversity.

PubMed

Winter, Lisa; Pflugmacher, Stephan; Berger, Markus; Finkbeiner, Matthias

2018-03-01

For the past 20 years, the life cycle assessment (LCA) community has sought to integrate impacts on biodiversity into the LCA framework. However, existing impact assessment methods still fail to do so comprehensively because they quantify only a few impacts related to specific species and regions. This paper proposes a methodological framework that will allow LCA practitioners to assess currently missing impacts on biodiversity on a global scale. Building on existing models that seek to quantify the impacts of human activities on biodiversity, the herein proposed methodological framework consists of 2 components: a habitat factor for 14 major habitat types and the impact on the biodiversity status in those major habitat types. The habitat factor is calculated by means of indicators that characterize each habitat. The biodiversity status depends on parameters from impact categories. The impact functions, relating these different parameters to a given response in the biodiversity status, rely on expert judgments. To ensure the applicability for LCA practitioners, the components of the framework can be regionalized on a country scale for which LCA inventory data is more readily available. The weighting factors for the 14 major habitat types range from 0.63 to 1.82. By means of area weighting of the major habitat types in a country, country-specific weighting factors are calculated. In order to demonstrate the main part of the framework, examples of impact functions are given for the categories "freshwater eutrophication" and "freshwater ecotoxicity" in 1 major habitat type. The results confirm suitability of the methodological framework. The major advantages are the framework's user-friendliness, given that data can be used from LCA databases directly, and the complete inclusion of all levels of biodiversity (genetic, species, and ecosystem). It is applicable for the whole world and a wide range of impact categories. Integr Environ Assess Manag 2018;14:282-297. © 2017 SETAC. © 2017 SETAC.

Anthropogenic land use shapes the composition and phylogenetic structure of soil arbuscular mycorrhizal fungal communities.

PubMed

Moora, Mari; Davison, John; Öpik, Maarja; Metsis, Madis; Saks, Ülle; Jairus, Teele; Vasar, Martti; Zobel, Martin

2014-12-01

Arbuscular mycorrhizal (AM) fungi play an important role in ecosystems, but little is known about how soil AM fungal community composition varies in relation to habitat type and land-use intensity. We molecularly characterized AM fungal communities in soil samples (n = 88) from structurally open (permanent grassland, intensive and sustainable agriculture) and forested habitats (primeval forest and spruce plantation). The habitats harboured significantly different AM fungal communities, and there was a broad difference in fungal community composition between forested and open habitats, the latter being characterized by higher average AM fungal richness. Within both open and forest habitats, intensive land use significantly influenced community composition. There was a broad difference in the phylogenetic structure of AM fungal communities between mechanically disturbed and nondisturbed habitats. Taxa from Glomeraceae served as indicator species for the nondisturbed habitats, while taxa from Archaeosporaceae, Claroideoglomeraceae and Diversisporaceae were indicators for the disturbed habitats. The distribution of these indicator taxa among habitat types in the MaarjAM global database of AM fungal diversity was in accordance with their local indicator status. © 2014 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

Estimating habitat volume of living resources using three-dimensional circulation and biogeochemical models

NASA Astrophysics Data System (ADS)

Smith, Katharine A.; Schlag, Zachary; North, Elizabeth W.

2018-07-01

Coupled three-dimensional circulation and biogeochemical models predict changes in water properties that can be used to define fish habitat, including physiologically important parameters such as temperature, salinity, and dissolved oxygen. However, methods for calculating the volume of habitat defined by the intersection of multiple water properties are not well established for coupled three-dimensional models. The objectives of this research were to examine multiple methods for calculating habitat volume from three-dimensional model predictions, select the most robust approach, and provide an example application of the technique. Three methods were assessed: the "Step," "Ruled Surface", and "Pentahedron" methods, the latter of which was developed as part of this research. Results indicate that the analytical Pentahedron method is exact, computationally efficient, and preserves continuity in water properties between adjacent grid cells. As an example application, the Pentahedron method was implemented within the Habitat Volume Model (HabVol) using output from a circulation model with an Arakawa C-grid and physiological tolerances of juvenile striped bass (Morone saxatilis). This application demonstrates that the analytical Pentahedron method can be successfully applied to calculate habitat volume using output from coupled three-dimensional circulation and biogeochemical models, and it indicates that the Pentahedron method has wide application to aquatic and marine systems for which these models exist and physiological tolerances of organisms are known.

Predictions for an invaded world: A strategy to predict the distribution of native and non-indigenous species at multiple scales

USGS Publications Warehouse

Reusser, D.A.; Lee, H.

2008-01-01

Habitat models can be used to predict the distributions of marine and estuarine non-indigenous species (NIS) over several spatial scales. At an estuary scale, our goal is to predict the estuaries most likely to be invaded, but at a habitat scale, the goal is to predict the specific locations within an estuary that are most vulnerable to invasion. As an initial step in evaluating several habitat models, model performance for a suite of benthic species with reasonably well-known distributions on the Pacific coast of the US needs to be compared. We discuss the utility of non-parametric multiplicative regression (NPMR) for predicting habitat- and estuary-scale distributions of native and NIS. NPMR incorporates interactions among variables, allows qualitative and categorical variables, and utilizes data on absence as well as presence. Preliminary results indicate that NPMR generally performs well at both spatial scales and that distributions of NIS are predicted as well as those of native species. For most species, latitude was the single best predictor, although similar model performance could be obtained at both spatial scales with combinations of other habitat variables. Errors of commission were more frequent at a habitat scale, with omission and commission errors approximately equal at an estuary scale. ?? 2008 International Council for the Exploration of the Sea. Published by Oxford Journals. All rights reserved.

Ecological Functions of Off-Channel Habitats of the Willamette River, Oregon, Database and Documentation (1997-2001)

EPA Science Inventory

The database from the Ecological Functions of Off-Channel Habitats of the Willamette River, Oregon project (OCH Project) contains data collected from 1997 through 2001 from multiple research areas of the project, and project documents such as the OCH Research Plan, Quality Assura...

Modeling Habitat Associations for the Common Loon (Gavia immer) at Multiple Scales in Northeastern North America

EPA Science Inventory

The Common Loon (Gavia immer) is considered an emblematic and ecologically important example of aquatic-dependent wildlife in North America. The northern breeding range of Common Loons has contracted over the last century, presumably as a result of habitat degradation from human ...

Chapter 6: Managing forests for wildlife communities

Treesearch

M North; P. Manley

2012-01-01

Forest management to maintain native wildlife communities is an important, yet complex objective. The complexities stem from two primary sources: habitat requirements for native species are diverse and span multiple spatial scales and seral stages, and habitat is a species-specific concept making multispecies community response difficult to predict. Given these...

Species composition and abundance of mosquito larvae in relation with their habitat characteristics in Mazandaran Province, northern Iran.

PubMed

Nikookar, S H; Fazeli-Dinan, M; Azari-Hamidian, S; Mousavinasab, S N; Arabi, M; Ziapour, S P; Shojaee, J; Enayati, A

2017-10-01

Mosquitoes transmit a variety of diseases to humans. Their abundance and distribution are related to the characteristics of larval habitats. Mosquito larvae were collected from 120 natural and artificial habitats in 30 villages of 16 counties using standard 350 ml dippers and pipette, on a monthly basis from May-December 2014 in Mazandaran Province, northern Iran. Larval habitat characteristics were recorded separately, based on the conditions of the habitats (permanent or temporary, stagnant or running), type of habitats (natural or artificial), vegetation, exposure to sun, type of bed, water condition (clear or turbid), expanse (m), depth (cm, m) and temperature (°C) of habitats. The relationship between larval density and environmental variables was assessed by Chi-square tests. Totally, 19,840 larvae from three genera and 16 species were collected and identified. Anopheles maculipennis s.l. and Culex pipiens were the dominant species and collected with the highest density in plain areas. The highest number of larvae were collected from natural habitats (60.34%), including; river edge, marsh, pit and wetlands; with temporary and stagnant water, expanse of 0-5 m, depth of 1-25 cm, without plant, shadow-sun, muddy floor, turbid water, temperature 20-25°C and in sunny conditions. River edge and rice fields for An. maculipennis s.l and, wetlands and discarded tires for Cx. pipiens were the main larval habitats in the province. Statistical analysis revealed significant relation between occurrence of An. maculipennis s.l., Cx. pipiens, Culex torrentium, Culex mimeticus and Cs. annulata with each of the environmental variables (P < 0.001). These findings are essential in expanding our knowledge of the vectors ecology specially the type of habitat preference and will be beneficial in larval control programs.

Fish Habitat and Fish Populations in a Southern Appalachian Watershed before and after Hurricane Hugo

Treesearch

C. Andrew Dolloff; Patricia A. Flebbe; Michael D. Owen

1994-01-01

Habitat features and relative abundance of all fish species were estimated in 8.4 km of a small mountain stream system before and 11 months after Hurricane Hugo crossed the southern Appalachians in September 1989. There was no change in the total amount (area) of each habitat type but the total number of habitat units decreased and average size and depth of habitat...

Parallel Evolution of Larval Feeding Behavior, Morphology, and Habitat in the Snail-Kiling fly Genus Tetanocera

NASA Astrophysics Data System (ADS)

Chapman, E. G.; Foote, B. A.; Malukiewicz, J.; Hoeh, W. R.

2005-05-01

Sciomyzid larvae (Diptera: Acalyptratae) display a wide range of feeding behaviors, typically preying on a wide variety of gastropods. The genus Tetanocera is particularly interesting because its species occupy five larval feeding groups with each species' larvae living in one of two habitat types (aquatic or terrestrial). We constructed a molecular phylogeny for Tetanocera, estimated evolutionary transitions in larval feeding behaviors and habitats that occurred during Tetanocera phylogenesis, and investigated potential correlations among larval habitat and morphological characteristics. Approximately 3800 base pairs (both mitochondrial and nuclear) of sequence data were used to build the phylogeny. Larval feeding groups and habitat type were mapped onto the phylogeny and pair-wise comparisons were used to evaluate potential associations between habitat and morphology. Feeding and habitat groups within Tetanocera were usually not monophyletic and it was estimated that Tetanocera lineages made at least three independent aquatic to terrestrial transitions. These parallel habitat shifts were typically accompanied by parallel character state changes in four morphological characteristics (larval color and three posterior spiracular disc characters). These larval habitat-morphology associations were statistically significant and consistent with the action of natural selection in facilitating the morphological changes that occurred during aquatic to terrestrial habitat transitions in Tetanocera.

Bird species associated with green ash woodlands in the Slim Buttes, South Dakota

Treesearch

Robert A. Hodorff; Carolyn Hull Sieg

1986-01-01

In western South Dakota, native deciduous woodlands are uncommon, constituting less than 1% of the total land area (Boldt et al. 1978). The Green Ash/Common Chokecherry (Fraxinus pennsylvanica/Prunus virginiana) habitat type is the major deciduous habitat type in northwestern South Dakota (Hansen and Hoffman 1985). This type occurs in depressions,...

Multilayer networks reveal the spatial structure of seed-dispersal interactions across the Great Rift landscapes.

PubMed

Timóteo, Sérgio; Correia, Marta; Rodríguez-Echeverría, Susana; Freitas, Helena; Heleno, Ruben

2018-01-10

Species interaction networks are traditionally explored as discrete entities with well-defined spatial borders, an oversimplification likely impairing their applicability. Using a multilayer network approach, explicitly accounting for inter-habitat connectivity, we investigate the spatial structure of seed-dispersal networks across the Gorongosa National Park, Mozambique. We show that the overall seed-dispersal network is composed by spatially explicit communities of dispersers spanning across habitats, functionally linking the landscape mosaic. Inter-habitat connectivity determines spatial structure, which cannot be accurately described with standard monolayer approaches either splitting or merging habitats. Multilayer modularity cannot be predicted by null models randomizing either interactions within each habitat or those linking habitats; however, as habitat connectivity increases, random processes become more important for overall structure. The importance of dispersers for the overall network structure is captured by multilayer versatility but not by standard metrics. Highly versatile species disperse many plant species across multiple habitats, being critical to landscape functional cohesion.

Response of algal metrics to nutrients and physical factors and identification of nutrient thresholds in agricultural streams

USGS Publications Warehouse

Black, R.W.; Moran, P.W.; Frankforter, J.D.

2011-01-01

Many streams within the United States are impaired due to nutrient enrichment, particularly in agricultural settings. The present study examines the response of benthic algal communities in agricultural and minimally disturbed sites from across the western United States to a suite of environmental factors, including nutrients, collected at multiple scales. The first objective was to identify the relative importance of nutrients, habitat and watershed features, and macroinvertebrate trophic structure to explain algal metrics derived from deposition and erosion habitats. The second objective was to determine if thresholds in total nitrogen (TN) and total phosphorus (TP) related to algal metrics could be identified and how these thresholds varied across metrics and habitats. Nutrient concentrations within the agricultural areas were elevated and greater than published threshold values. All algal metrics examined responded to nutrients as hypothesized. Although nutrients typically were the most important variables in explaining the variation in each of the algal metrics, environmental factors operating at multiple scales also were important. Calculated thresholds for TN or TP based on the algal metrics generated from samples collected from erosion and deposition habitats were not significantly different. Little variability in threshold values for each metric for TN and TP was observed. The consistency of the threshold values measured across multiple metrics and habitats suggest that the thresholds identified in this study are ecologically relevant. Additional work to characterize the relationship between algal metrics, physical and chemical features, and nuisance algal growth would be of benefit to the development of nutrient thresholds and criteria. ?? 2010 The Author(s).

Informing Species Conservation at Multiple Scales Using Data Collected for Marine Mammal Stock Assessments

PubMed Central

Grech, Alana; Sheppard, James; Marsh, Helene

2011-01-01

Background Conservation planning and the design of marine protected areas (MPAs) requires spatially explicit information on the distribution of ecological features. Most species of marine mammals range over large areas and across multiple planning regions. The spatial distributions of marine mammals are difficult to predict using habitat modelling at ecological scales because of insufficient understanding of their habitat needs, however, relevant information may be available from surveys conducted to inform mandatory stock assessments. Methodology and Results We use a 20-year time series of systematic aerial surveys of dugong (Dugong dugong) abundance to create spatially-explicit models of dugong distribution and relative density at the scale of the coastal waters of northeast Australia (∼136,000 km2). We interpolated the corrected data at the scale of 2 km * 2 km planning units using geostatistics. Planning units were classified as low, medium, high and very high dugong density on the basis of the relative density of dugongs estimated from the models and a frequency analysis. Torres Strait was identified as the most significant dugong habitat in northeast Australia and the most globally significant habitat known for any member of the Order Sirenia. The models are used by local, State and Federal agencies to inform management decisions related to the Indigenous harvest of dugongs, gill-net fisheries and Australia's National Representative System of Marine Protected Areas. Conclusion/Significance In this paper we demonstrate that spatially-explicit population models add value to data collected for stock assessments, provide a robust alternative to predictive habitat distribution models, and inform species conservation at multiple scales. PMID:21464933

Response of algal metrics to nutrients and physical factors and identification of nutrient thresholds in agricultural streams.

PubMed

Black, Robert W; Moran, Patrick W; Frankforter, Jill D

2011-04-01

Many streams within the United States are impaired due to nutrient enrichment, particularly in agricultural settings. The present study examines the response of benthic algal communities in agricultural and minimally disturbed sites from across the western United States to a suite of environmental factors, including nutrients, collected at multiple scales. The first objective was to identify the relative importance of nutrients, habitat and watershed features, and macroinvertebrate trophic structure to explain algal metrics derived from deposition and erosion habitats. The second objective was to determine if thresholds in total nitrogen (TN) and total phosphorus (TP) related to algal metrics could be identified and how these thresholds varied across metrics and habitats. Nutrient concentrations within the agricultural areas were elevated and greater than published threshold values. All algal metrics examined responded to nutrients as hypothesized. Although nutrients typically were the most important variables in explaining the variation in each of the algal metrics, environmental factors operating at multiple scales also were important. Calculated thresholds for TN or TP based on the algal metrics generated from samples collected from erosion and deposition habitats were not significantly different. Little variability in threshold values for each metric for TN and TP was observed. The consistency of the threshold values measured across multiple metrics and habitats suggest that the thresholds identified in this study are ecologically relevant. Additional work to characterize the relationship between algal metrics, physical and chemical features, and nuisance algal growth would be of benefit to the development of nutrient thresholds and criteria.

Susceptibility of eastern U.S. habitats to invasion of Celastrus orbiculatus (oriental bittersweet) following fire

USGS Publications Warehouse

Leicht-Young, Stacey A.; Pavlovic, Noel B.; Grundel, Ralph

2013-01-01

Fire effects on invasive species are an important land management issue in areas subjected to prescribed fires as well as wildfires. These effects on invasive species can be manifested across life stages. The liana Celastrus orbiculatus (oriental bittersweet) is a widespread invader of eastern US habitats including those where fire management is in practice. This study examined if prescribed fire makes these habitats more susceptible to invasion of C. orbiculatus by seed at Indiana Dunes National Lakeshore. Four treatments (control, litter removed, high and low intensity fire) were applied in six habitat types (sand savanna/woodland, sand prairie, moraine prairie, sand oak forest, beech-maple forest, and oak-hickory forest) and germinating seedlings were tracked over two growing seasons. Treatment did not have a significant effect on the germination, survival, or biomass of C. orbiculatus. However, habitat type did influence these responses mostly in the first growing season. Moraine prairie, beech-maple forest, and oak-hickory forests had the greatest peak percentage of germinants. Moraine prairie had significantly greater survival than oak forest and savanna habitats. Control plots with intact litter, and the moraine prairie habitat had the tallest seedlings at germination, while tallest final heights and greatest aboveground biomass were highest in oak forest. Thus, fire and litter removal did not increase the susceptibility of these habitats to germination and survival of C. orbiculatus. These results indicate that most eastern US habitats are vulnerable to invasion by this species via seed regardless of the level or type of disturbance to the litter layer.

Potential Impacts and Management Implications of Climate Change on Tampa Bay Estuary Critical Coastal Habitats

NASA Astrophysics Data System (ADS)

Sherwood, Edward T.; Greening, Holly S.

2014-02-01

The Tampa Bay estuary is a unique and valued ecosystem that currently thrives between subtropical and temperate climates along Florida's west-central coast. The watershed is considered urbanized (42 % lands developed); however, a suite of critical coastal habitats still persists. Current management efforts are focused toward restoring the historic balance of these habitat types to a benchmark 1950s period. We have modeled the anticipated changes to a suite of habitats within the Tampa Bay estuary using the sea level affecting marshes model under various sea level rise (SLR) scenarios. Modeled changes to the distribution and coverage of mangrove habitats within the estuary are expected to dominate the overall proportions of future critical coastal habitats. Modeled losses in salt marsh, salt barren, and coastal freshwater wetlands by 2100 will significantly affect the progress achieved in "Restoring the Balance" of these habitat types over recent periods. Future land management and acquisition priorities within the Tampa Bay estuary should consider the impending effects of both continued urbanization within the watershed and climate change. This requires the recognition that: (1) the Tampa Bay estuary is trending towards a mangrove-dominated system; (2) the current management paradigm of "Restoring the Balance" may no longer provide realistic, attainable goals; (3) restoration that creates habitat mosaics will prove more resilient in the future; and (4) establishing subtidal and upslope "refugia" may be a future strategy in this urbanized estuary to allow sensitive habitat types (e.g., seagrass and salt barren) to persist under anticipated climate change and SLR impacts.

Potential impacts and management implications of climate change on Tampa Bay estuary critical coastal habitats.

PubMed

Sherwood, Edward T; Greening, Holly S

2014-02-01

The Tampa Bay estuary is a unique and valued ecosystem that currently thrives between subtropical and temperate climates along Florida's west-central coast. The watershed is considered urbanized (42 % lands developed); however, a suite of critical coastal habitats still persists. Current management efforts are focused toward restoring the historic balance of these habitat types to a benchmark 1950s period. We have modeled the anticipated changes to a suite of habitats within the Tampa Bay estuary using the sea level affecting marshes model under various sea level rise (SLR) scenarios. Modeled changes to the distribution and coverage of mangrove habitats within the estuary are expected to dominate the overall proportions of future critical coastal habitats. Modeled losses in salt marsh, salt barren, and coastal freshwater wetlands by 2100 will significantly affect the progress achieved in "Restoring the Balance" of these habitat types over recent periods. Future land management and acquisition priorities within the Tampa Bay estuary should consider the impending effects of both continued urbanization within the watershed and climate change. This requires the recognition that: (1) the Tampa Bay estuary is trending towards a mangrove-dominated system; (2) the current management paradigm of "Restoring the Balance" may no longer provide realistic, attainable goals; (3) restoration that creates habitat mosaics will prove more resilient in the future; and (4) establishing subtidal and upslope "refugia" may be a future strategy in this urbanized estuary to allow sensitive habitat types (e.g., seagrass and salt barren) to persist under anticipated climate change and SLR impacts.

Seasonal relationships between birds and arthropods in bottomland forest canopy gaps.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bowen, Liessa, Thomas

2004-12-31

Bowen, Liessa, Thomas. 2004. Seasonal relationships between birds and arthropods in bottomland forest canopy gaps. PhD Dissertation. North Carolina State University. Raleigh, North Carolina. 98pp. I investigated the influence of arthropod availability and vegetation structure on avian habitat use at the center, edge, and adjacent to forest canopy gaps in 2001 and 2002. I used mist-netting and plot counts to estimate abundance of birds using three sizes (0.13, 0.26, and 0.5 ha) of 7-8 year old group-selection timber harvest openings during four seasons (spring migration, breeding, post-breeding, and fall migration) in a bottomland hardwood forest in the Upper Coastal Plainmore » of South Carolina. I used foliage clipping, Malaise trapping, and pitfall trapping to determine arthropod abundance within each habitat, and I used a warm water crop-flush on captured birds to gather information about arthropods eaten. I observed more birds, including forest interior species, forest-edge spedge species, and several individual species, in early-successional canopy gap and gap-edge habitats than in surrounding mature forest during all seasons. I found a significant interaction between season and habitat type for several groups and individual species, suggesting a seasonal shift in habitat use. Captures of all birds, insectivorous birds, foliage- gleaners, ground-gleaners, aerial salliers, Hooded Warbler (Wilsonia citrina), Northern Cardinal (Cardinalis cardinalis), White-eyed Vireo (Vireo griseus), and Black-throated Blue Warbler (Dendroica caerulescens) were positively correlated with understory vegetation density during two or more seasons. I found relationships between insectivorous birds and leaf-dwelling Lepidoptera, insectivorous birds and ground-dwelling arthropods, foliage-gleaning birds and foliage-dwelling arthropods, and aerial salliers and flying arthropods, as well as between individual bird species and arthropods. Relationships were inconsistent, however, with many species being negatively correlated with arthropod abundance. Coleopteran, Lepidopteran, and Aranid prey items represented the greatest proportions of crop-flush samples during all seasons. Proportional consumption of Coleopteran and Hemipteran prey items was higher than their proportional availability, and consumption of Aranid and Hymenopteran prey items was lower than their proportional availability during all seasons. Individual bird species and guilds consistently consumed similar proportions of certain groups of arthropods from spring through fall migration, with no apparent seasonal shift in diet composition. My research suggests that many species of birds selectively choose mid-successional gap and gap-edge habitat over surrounding mature forest during the non-breeding season, and the creation of small canopy gaps within a mature forest may increase local bird species richness. It is less obvious how arthropod availability affects bird habitat use across seasons. A structurally diverse mosaic of habitat types, including regenerating canopy gaps within a mature forest, may provide valuable habitat for birds and a variety of arthropod prey items across multiple seasons.« less

Coastal Vertebrate Exposure to Predicted Habitat Changes Due to Sea Level Rise.

PubMed

Hunter, Elizabeth A; Nibbelink, Nathan P; Alexander, Clark R; Barrett, Kyle; Mengak, Lara F; Guy, Rachel K; Moore, Clinton T; Cooper, Robert J

2015-12-01

Sea level rise (SLR) may degrade habitat for coastal vertebrates in the Southeastern United States, but it is unclear which groups or species will be most exposed to habitat changes. We assessed 28 coastal Georgia vertebrate species for their exposure to potential habitat changes due to SLR using output from the Sea Level Affecting Marshes Model and information on the species' fundamental niches. We assessed forecasted habitat change up to the year 2100 using three structural habitat metrics: total area, patch size, and habitat permanence. Almost all of the species (n = 24) experienced negative habitat changes due to SLR as measured by at least one of the metrics. Salt marsh and ocean beach habitats experienced the most change (out of 16 categorical land cover types) across the three metrics and species that used salt marsh extensively (rails and marsh sparrows) were ranked highest for exposure to habitat changes. Species that nested on ocean beaches (Diamondback Terrapins, shorebirds, and terns) were also ranked highly, but their use of other foraging habitats reduced their overall exposure. Future studies on potential effects of SLR on vertebrates in southeastern coastal ecosystems should focus on the relative importance of different habitat types to these species' foraging and nesting requirements. Our straightforward prioritization approach is applicable to other coastal systems and can provide insight to managers on which species to focus resources, what components of their habitats need to be protected, and which locations in the study area will provide habitat refuges in the face of SLR.

Determination of habitat requirements for Apache Trout

USGS Publications Warehouse

Petre, Sally J.; Bonar, Scott A.

2017-01-01

The Apache Trout Oncorhynchus apache, a salmonid endemic to east-central Arizona, is currently listed as threatened under the U.S. Endangered Species Act. Establishing and maintaining recovery streams for Apache Trout and other endemic species requires determination of their specific habitat requirements. We built upon previous studies of Apache Trout habitat by defining both stream-specific and generalized optimal and suitable ranges of habitat criteria in three streams located in the White Mountains of Arizona. Habitat criteria were measured at the time thought to be most limiting to juvenile and adult life stages, the summer base flow period. Based on the combined results from three streams, we found that Apache Trout use relatively deep (optimal range = 0.15–0.32 m; suitable range = 0.032–0.470 m) pools with slow stream velocities (suitable range = 0.00–0.22 m/s), gravel or smaller substrate (suitable range = 0.13–2.0 [Wentworth scale]), overhead cover (suitable range = 26–88%), and instream cover (large woody debris and undercut banks were occupied at higher rates than other instream cover types). Fish were captured at cool to moderate temperatures (suitable range = 10.4–21.1°C) in streams with relatively low maximum seasonal temperatures (optimal range = 20.1–22.9°C; suitable range = 17.1–25.9°C). Multiple logistic regression generally confirmed the importance of these variables for predicting the presence of Apache Trout. All measured variables except mean velocity were significant predictors in our model. Understanding habitat needs is necessary in managing for persistence, recolonization, and recruitment of Apache Trout. Management strategies such as fencing areas to restrict ungulate use and grazing and planting native riparian vegetation might favor Apache Trout persistence and recolonization by providing overhead cover and large woody debris to form pools and instream cover, shading streams and lowering temperatures.

Omicron space habitat—research stage II

NASA Astrophysics Data System (ADS)

Doule, Ondřej; Šálený, Vratislav; Hérin, Benoît; Rousek, Tomáš

2012-01-01

The design presented in this paper is in response to the revolution in private space activities, the increasing public interest in commercial flights to space and the utilization of structures such as space hotels or private orbital habitats. The baseline for the Omicron design concept is the Russian Salyut derived space station module. Salyut was the first space station to orbit the Earth. Its unique design and technical features were what made the development of space stations Salyut 1-7, MIR and the International Space Station (ISS) Zwezda service module possible. Due to its versatility and the reliable operating launch vehicle Proton, this space module series has the potential to be adapted for space hotel development. This paper proposes a conceptual design of the space habitat called Omicron, with particular focus on interior design for the microgravity environment. The Omicron concepts address the needs of space tourism with a strong emphasis on the safety and comfort of the spaceflight participants. The Omicron habitat supports three inhabitants in nominal conditions (e.g., two passengers and one astronaut). The habitat provides a flexible interior, facilities and spaces dynamically transforming in order to accommodate various types of activities, which will be performed in an organically formed interior supporting spatial orientation and movement in microgravity. The future development potential of Omicron is also considered. The baseline version is composed solely of one rigid module with an inverted cupola for observations. An alternative version offers more space using an inflatable structure. Finally, a combination of multiple Omicron modules enables the creation of a larger orbital habitat. The Omicron's subsystems support a few days visit by trained passengers. The transport to the habitat would be provided e.g., by the Soyuz TMA spacecraft carried by the Soyuz launch vehicle in the early stage of Omicron's development, before a fully reusable spacecraft would be available.

Predator behaviour and predation risk in the heterogeneous Arctic environment.

PubMed

Lecomte, Nicolas; Careau, Vincent; Gauthier, Gilles; Giroux, Jean-François

2008-05-01

1. Habitat heterogeneity and predator behaviour can strongly affect predator-prey interactions but these factors are rarely considered simultaneously, especially when systems encompass multiple predators and prey. 2. In the Arctic, greater snow geese Anser caerulescens atlanticus L. nest in two structurally different habitats: wetlands that form intricate networks of water channels, and mesic tundra where such obstacles are absent. In this heterogeneous environment, goose eggs are exposed to two types of predators: the arctic fox Vulpes lagopus L. and a diversity of avian predators. We hypothesized that, contrary to birds, the hunting ability of foxes would be impaired by the structurally complex wetland habitat, resulting in a lower predation risk for goose eggs. 3. In addition, lemmings, the main prey of foxes, show strong population cycles. We thus further examined how their fluctuations influenced the interaction between habitat heterogeneity and fox predation on goose eggs. 4. An experimental approach with artificial nests suggested that foxes were faster than avian predators to find unattended goose nests in mesic tundra whereas the reverse was true in wetlands. Foxes spent 3.5 times more time between consecutive attacks on real goose nests in wetlands than in mesic tundra. Their attacks on goose nests were also half as successful in wetlands than in mesic tundra whereas no difference was found for avian predators. 5. Nesting success in wetlands (65%) was higher than in mesic tundra (56%) but the difference between habitats increased during lemming crashes (15%) compared to other phases of the cycle (5%). Nests located at the edge of wetland patches were also less successful than central ones, suggesting a gradient in accessibility of goose nests in wetlands for foxes. 6. Our study shows that the structural complexity of wetlands decreases predation risk from foxes but not avian predators in arctic-nesting birds. Our results also demonstrate that cyclic lemming populations indirectly alter the spatial distribution of productive nests due to a complex interaction between habitat structure, prey-switching and foraging success of foxes.

Fire ecology of the forest habitat types of northern Idaho

Treesearch

Jane Kapler Smith; William C. Fischer

1997-01-01

Provides information on fire ecology in forest habitat and community types occurring in northern Idaho. Identifies fire groups based on presettlement fire regimes and patterns of succession and stand development after fire. Describes forest fuels and suggests considerations for fire management.

Germination, survival and early growth of conifer seedlings in two habitat types.

Treesearch

Don Minore

1986-01-01

Conifer seeds were sown in clearcut Abies amabilis/Achlys triphylla and Abies amabilis/Vaccinium membranaceum/Xerophyllum tenax habitat types in the McKenzie River basin in Oregon to determine ratios of seeds to established seedlings. Protection from animal...

COASTAL SUBMERGED VEGETATION: AQUATIC HABITAT RESEARCH

EPA Science Inventory

Aquatic vegetation is one of the most widespread and important types of aquatic habitat, in part because of the exceptional productivity of the plants. Aquatic vegetation also strongly influences local physical and chemical habitat conditions of significance to fish and shellfis...

Naturalization of European plants on other continents: The role of donor habitats.

PubMed

Kalusová, Veronika; Chytrý, Milan; van Kleunen, Mark; Mucina, Ladislav; Dawson, Wayne; Essl, Franz; Kreft, Holger; Pergl, Jan; Weigelt, Patrick; Winter, Marten; Pyšek, Petr

2017-12-26

The success of European plant species as aliens worldwide is thought to reflect their association with human-disturbed environments. However, an explicit test including all human-made, seminatural and natural habitat types of Europe, and their contributions as donor habitats of naturalized species to the rest of the globe, has been missing. Here we combine two databases, the European Vegetation Checklist and the Global Naturalized Alien Flora, to assess how human influence in European habitats affects the probability of naturalization of their plant species on other continents. A total of 9,875 native European vascular plant species were assigned to 39 European habitat types; of these, 2,550 species have become naturalized somewhere in the world. Species that occur in both human-made habitats and seminatural or natural habitats in Europe have the highest probability of naturalization (64.7% and 64.5% of them have naturalized). Species associated only with human-made or seminatural habitats still have a significantly higher probability of becoming naturalized (41.7% and 28.6%, respectively) than species confined to natural habitats (19.4%). Species associated with arable land and human settlements were recorded as naturalized in the largest number of regions worldwide. Our findings highlight that plant species' association with native-range habitats disturbed by human activities, combined with broad habitat range, play an important role in shaping global patterns of plant invasions.

Effects of different substrates on the sprint performance of lizards.

PubMed

Tulli, Maria Jose; Abdala, Virginia; Cruz, Felix B

2012-03-01

The variation in substrate structure is one of the most important determinants of the locomotor abilities of lizards. Lizards are found across a range of habitats, from large rocks to loose sand, each of them with conflicting mechanical demands on locomotion. We examined the relationships among sprint speed, morphology and different types of substrate surfaces in species of lizards that exploit different structural habitats (arboreal, saxicolous, terrestrial and arenicolous) in a phylogenetic context. Our main goals were to assess which processes drive variability in morphology (i.e. phylogeny or adaptation to habitat) in order to understand how substrate structure affects sprint speed in species occupying different habitats and to determine the relationship between morphology and performance. Liolaemini lizards show that most morphological traits are constrained by phylogeny, particularly toe 3, the femur and foot. All ecological groups showed significant differences on rocky surfaces. Surprisingly, no ecological group performed better on the surface resembling its own habitat. Moreover, all groups exhibited significant differences in sprint speed among the three different types of experimental substrates and showed the best performance on sand, with the exception of the arboreal group. Despite the fact that species use different types of habitats, the highly conservative morphology of Liolaemini species and the similar levels of performance on different types of substrates suggest that they confer to the 'jack of all trades and master of none' principle.

Amphibian and reptile abundance in riparian and upslope areas of five forest types in western Oregon

USGS Publications Warehouse

Gomez, D.M.; Anthony, R.G.

1996-01-01

We compared species composition and relative abundance of herpetofauna between riparian and upslope habitats among 5 forest types (shrub, open sapling-pole, large sawtimber and old-growth conifer forests, and deciduous forests) in Western Oregon. Riparian- and upslope- associated species were identified based on capture frequencies from pitfall trapping. Species richness was similar among forest types but slightly greater in the shrub stands. The abundances of 3 species differed among forest types. Total captures was highest in deciduous forests, intermediate in the mature conifer forests, and lowest in the 2 young coniferous forests. Species richness was similar between stream and upslope habitats; however, captures were higher in riparian than upslope habitat. Tailed frogs (Ascaphus truei), Dunn's salamanders (Plethodon dunni), roughskin newts(Tanicha granulosa), Pacific giant salamanders (Dicamptodon tenebrosus) and red-legged frogs(Rana aurora) were captured more frequently in riparian than upslope habitats. Of these species the red-legged frog and Pacific giant salamander may depend on riparian habitat for at least part of their life requirements, while tailed frogs, Dunn's salamanders and roughskin newts appear to be riparian associated species. In addition, we found Oregon salamanders (Ensatina eschscholtzi) were associated with upslope habitats. We suggest riparian management zones should be al least 75-100 m on each side of the stream and that management for upslope/and or old forest associates may be equally as important as for riparian species.

Breeding Guild Determines Frog Distributions in Response to Edge Effects and Habitat Conversion in the Brazil's Atlantic Forest.

PubMed

Ferreira, Rodrigo B; Beard, Karen H; Crump, Martha L

2016-01-01

Understanding the response of species with differing life-history traits to habitat edges and habitat conversion helps predict their likelihood of persistence across changing landscape. In Brazil's Atlantic Forest, we evaluated frog richness and abundance by breeding guild at four distances from the edge of a reserve: i) 200 m inside the forest, ii) 50 m inside the forest, iii) at the forest edge, and iv) 50 m inside three different converted habitats (coffee plantation, non-native Eucalyptus plantation, and abandoned pastures, hereafter matrix types). By sampling a dry and a wet season, we recorded 622 individual frogs representing 29 species, of which three were undescribed. Breeding guild (i.e. bromeliad, leaf-litter, and water-body breeders) was the most important variable explaining frog distributions in relation to edge effects and matrix types. Leaf-litter and bromeliad breeders decreased in richness and abundance from the forest interior toward the matrix habitats. Water-body breeders increased in richness toward the matrix and remained relatively stable in abundance across distances. Number of large trees (i.e. DBH > 15 cm) and bromeliads best explained frog richness and abundance across distances. Twenty species found in the interior of the forest were not found in any matrix habitat. Richness and abundance across breeding guilds were higher in the rainy season but frog distributions were similar across the four distances in the two seasons. Across matrix types, leaf-litter species primarily used Eucalyptus plantations, whereas water-body species primarily used coffee plantations. Bromeliad breeders were not found inside any matrix habitat. Our study highlights the importance of primary forest for bromeliad and leaf-litter breeders. We propose that water-body breeders use edge and matrix habitats to reach breeding habitats along the valleys. Including life-history characteristics, such as breeding guild, can improve predictions of frog distributions in response to edge effect and matrix types, and can guide more effective management and conservation actions.

Primates Living Outside Protected Habitats Are More Stressed: The Case of Black Howler Monkeys in the Yucatán Peninsula

PubMed Central

Rangel-Negrín, Ariadna; Coyohua-Fuentes, Alejandro; Chavira, Roberto; Canales-Espinosa, Domingo; Dias, Pedro Américo D.

2014-01-01

The non-invasive monitoring of glucocorticoid hormones allows for the assessment of the physiological effects of anthropogenic disturbances on wildlife. Variation in glucocorticoid levels of the same species between protected and unprotect areas seldom has been measured, and the available evidence suggests that this relationship may depend on species-specific habitat requirements and biology. In the present study we focused on black howler monkeys (Alouatta pigra), a canopy-dwelling primate species, as a case study to evaluate the physiological consequences of living in unprotected areas, and relate them with intragroup competition and competition with extragroup individuals. From February 2006 to September 2007 we collected 371 fecal samples from 21 adults belonging to five groups (two from protected and three from unprotected areas) in Campeche, Mexico. We recorded agonistic interactions within groups and encounters with other groups (1,200 h of behavioral observations), and determined fecal glucocorticoid metabolite (FGM) concentrations with radioimmunoassays. We used linear mixed models and Akaike's information criterion to choose the best model explaining variation in FGM concentrations between protected and unprotected areas calculated from five categorical variables: habitat type (protected vs. unprotected), participation in agonistic interactions, intergroup encounters, sex and female reproductive state, and season. The best model included habitat type, the interaction between habitat type and agonism, and the interaction between habitat type and season. FGM concentrations were higher in unprotected habitats, particularly when individuals were involved in agonistic interactions; seasonal variation in FGM concentrations was only detected in protected habitats. High FGM concentrations in black howler monkeys living in unprotected habitats are associated with increased within-group food competition and probably associated with exposure to anthropogenic stressors and overall food scarcity. Because persistent high GC levels can be detrimental to health and fitness, populations living in disturbed unprotected areas may not be viable in the long-term. PMID:25375243

Primates living outside protected habitats are more stressed: the case of black howler monkeys in the Yucatán Peninsula.

PubMed

Rangel-Negrín, Ariadna; Coyohua-Fuentes, Alejandro; Chavira, Roberto; Canales-Espinosa, Domingo; Dias, Pedro Américo D

2014-01-01

The non-invasive monitoring of glucocorticoid hormones allows for the assessment of the physiological effects of anthropogenic disturbances on wildlife. Variation in glucocorticoid levels of the same species between protected and unprotect areas seldom has been measured, and the available evidence suggests that this relationship may depend on species-specific habitat requirements and biology. In the present study we focused on black howler monkeys (Alouatta pigra), a canopy-dwelling primate species, as a case study to evaluate the physiological consequences of living in unprotected areas, and relate them with intragroup competition and competition with extragroup individuals. From February 2006 to September 2007 we collected 371 fecal samples from 21 adults belonging to five groups (two from protected and three from unprotected areas) in Campeche, Mexico. We recorded agonistic interactions within groups and encounters with other groups (1,200 h of behavioral observations), and determined fecal glucocorticoid metabolite (FGM) concentrations with radioimmunoassays. We used linear mixed models and Akaike's information criterion to choose the best model explaining variation in FGM concentrations between protected and unprotected areas calculated from five categorical variables: habitat type (protected vs. unprotected), participation in agonistic interactions, intergroup encounters, sex and female reproductive state, and season. The best model included habitat type, the interaction between habitat type and agonism, and the interaction between habitat type and season. FGM concentrations were higher in unprotected habitats, particularly when individuals were involved in agonistic interactions; seasonal variation in FGM concentrations was only detected in protected habitats. High FGM concentrations in black howler monkeys living in unprotected habitats are associated with increased within-group food competition and probably associated with exposure to anthropogenic stressors and overall food scarcity. Because persistent high GC levels can be detrimental to health and fitness, populations living in disturbed unprotected areas may not be viable in the long-term.

A test of the acoustic adaptation hypothesis in four species of marmots.

PubMed

Daniel; Blumstein

1998-12-01

Acoustic signals must be transmitted from a signaller to a receiver during which time they become modified. The acoustic adaptation hypothesis suggests that selection should shape the structure of long-distance signals to maximize transmission through different habitats. A specific prediction of the acoustic adaptation hypothesis is that long-distance signals of animals in their native habitat are expected to change less during transmission than non-native signals within that habitat. This prediction was tested using the alarm calls of four species of marmots that live in acoustically different habitats and produce species-specific, long-distance alarm vocalizations: yellow-bellied marmot, Marmota flaviventris; Olympic marmot, M. olympus; hoary marmot, M. caligata; and woodchuck, M. monax. By doing so, we evaluated the relative importance the acoustic environment plays on selecting for divergent marmot alarm calls. Representative alarm calls of the four species were broadcast and rerecorded in each species' habitat at four distances from a source. Rerecorded, and therefore degraded alarm calls, were compared to undegraded calls using spectrogram correlation. If each species' alarm call was transmitted with less overall degradation in its own environment, a significant interaction between species' habitat and species' call type would be expected. Transmission fidelity at each of four distances was treated as a multivariate response and differences among habitat and call type were tested in a two-way MANOVA. Although significant overall differences in the transmission properties of the habitats were found, and significant overall differences in the transmission properties of the call types were found, there was no significant interaction between habitat and call type. Thus, the evidence did not support the acoustic adaptation hypothesis for these marmot species. Factors other than maximizing long-distance transmission through the environment may be important in the evolution of species-specific marmot alarm calls. (c) 1998 The Association for the Study of Animal Behaviour.

Breeding Guild Determines Frog Distributions in Response to Edge Effects and Habitat Conversion in the Brazil’s Atlantic Forest

PubMed Central

Ferreira, Rodrigo B.; Beard, Karen H.; Crump, Martha L.

2016-01-01

Understanding the response of species with differing life-history traits to habitat edges and habitat conversion helps predict their likelihood of persistence across changing landscape. In Brazil’s Atlantic Forest, we evaluated frog richness and abundance by breeding guild at four distances from the edge of a reserve: i) 200 m inside the forest, ii) 50 m inside the forest, iii) at the forest edge, and iv) 50 m inside three different converted habitats (coffee plantation, non-native Eucalyptus plantation, and abandoned pastures, hereafter matrix types). By sampling a dry and a wet season, we recorded 622 individual frogs representing 29 species, of which three were undescribed. Breeding guild (i.e. bromeliad, leaf-litter, and water-body breeders) was the most important variable explaining frog distributions in relation to edge effects and matrix types. Leaf-litter and bromeliad breeders decreased in richness and abundance from the forest interior toward the matrix habitats. Water-body breeders increased in richness toward the matrix and remained relatively stable in abundance across distances. Number of large trees (i.e. DBH > 15 cm) and bromeliads best explained frog richness and abundance across distances. Twenty species found in the interior of the forest were not found in any matrix habitat. Richness and abundance across breeding guilds were higher in the rainy season but frog distributions were similar across the four distances in the two seasons. Across matrix types, leaf-litter species primarily used Eucalyptus plantations, whereas water-body species primarily used coffee plantations. Bromeliad breeders were not found inside any matrix habitat. Our study highlights the importance of primary forest for bromeliad and leaf-litter breeders. We propose that water-body breeders use edge and matrix habitats to reach breeding habitats along the valleys. Including life-history characteristics, such as breeding guild, can improve predictions of frog distributions in response to edge effect and matrix types, and can guide more effective management and conservation actions. PMID:27272328

Quantile regression of microgeographic variation in population characteristics of an invasive vertebrate predator

USGS Publications Warehouse

Siers, Shane R.; Savidge, Julie A.; Reed, Robert

2017-01-01

Localized ecological conditions have the potential to induce variation in population characteristics such as size distributions and body conditions. The ability to generalize the influence of ecological characteristics on such population traits may be particularly meaningful when those traits influence prospects for successful management interventions. To characterize variability in invasive Brown Treesnake population attributes within and among habitat types, we conducted systematic and seasonally-balanced surveys, collecting 100 snakes from each of 18 sites: three replicates within each of six major habitat types comprising 95% of Guam’s geographic expanse. Our study constitutes one of the most comprehensive and controlled samplings of any published snake study. Quantile regression on snake size and body condition indicated significant ecological heterogeneity, with a general trend of relative consistency of size classes and body conditions within and among scrub and Leucaena forest habitat types and more heterogeneity among ravine forest, savanna, and urban residential sites. Larger and more robust snakes were found within some savanna and urban habitat replicates, likely due to relative availability of larger prey. Compared to more homogeneous samples in the wet season, variability in size distributions and body conditions was greater during the dry season. Although there is evidence of habitat influencing Brown Treesnake populations at localized scales (e.g., the higher prevalence of larger snakes—particularly males—in savanna and urban sites), the level of variability among sites within habitat types indicates little ability to make meaningful predictions about these traits at unsampled locations. Seasonal variability within sites and habitats indicates that localized population characterization should include sampling in both wet and dry seasons. Extreme values at single replicates occasionally influenced overall habitat patterns, while pooling replicates masked variability among sites. A full understanding of population characteristics should include an assessment of variability both at the site and habitat level.

Quantile regression of microgeographic variation in population characteristics of an invasive vertebrate predator

PubMed Central

Siers, Shane R.; Savidge, Julie A.; Reed, Robert N.

2017-01-01

Localized ecological conditions have the potential to induce variation in population characteristics such as size distributions and body conditions. The ability to generalize the influence of ecological characteristics on such population traits may be particularly meaningful when those traits influence prospects for successful management interventions. To characterize variability in invasive Brown Treesnake population attributes within and among habitat types, we conducted systematic and seasonally-balanced surveys, collecting 100 snakes from each of 18 sites: three replicates within each of six major habitat types comprising 95% of Guam’s geographic expanse. Our study constitutes one of the most comprehensive and controlled samplings of any published snake study. Quantile regression on snake size and body condition indicated significant ecological heterogeneity, with a general trend of relative consistency of size classes and body conditions within and among scrub and Leucaena forest habitat types and more heterogeneity among ravine forest, savanna, and urban residential sites. Larger and more robust snakes were found within some savanna and urban habitat replicates, likely due to relative availability of larger prey. Compared to more homogeneous samples in the wet season, variability in size distributions and body conditions was greater during the dry season. Although there is evidence of habitat influencing Brown Treesnake populations at localized scales (e.g., the higher prevalence of larger snakes—particularly males—in savanna and urban sites), the level of variability among sites within habitat types indicates little ability to make meaningful predictions about these traits at unsampled locations. Seasonal variability within sites and habitats indicates that localized population characterization should include sampling in both wet and dry seasons. Extreme values at single replicates occasionally influenced overall habitat patterns, while pooling replicates masked variability among sites. A full understanding of population characteristics should include an assessment of variability both at the site and habitat level. PMID:28570632

Quantile regression of microgeographic variation in population characteristics of an invasive vertebrate predator.

PubMed

Siers, Shane R; Savidge, Julie A; Reed, Robert N

2017-01-01

Localized ecological conditions have the potential to induce variation in population characteristics such as size distributions and body conditions. The ability to generalize the influence of ecological characteristics on such population traits may be particularly meaningful when those traits influence prospects for successful management interventions. To characterize variability in invasive Brown Treesnake population attributes within and among habitat types, we conducted systematic and seasonally-balanced surveys, collecting 100 snakes from each of 18 sites: three replicates within each of six major habitat types comprising 95% of Guam's geographic expanse. Our study constitutes one of the most comprehensive and controlled samplings of any published snake study. Quantile regression on snake size and body condition indicated significant ecological heterogeneity, with a general trend of relative consistency of size classes and body conditions within and among scrub and Leucaena forest habitat types and more heterogeneity among ravine forest, savanna, and urban residential sites. Larger and more robust snakes were found within some savanna and urban habitat replicates, likely due to relative availability of larger prey. Compared to more homogeneous samples in the wet season, variability in size distributions and body conditions was greater during the dry season. Although there is evidence of habitat influencing Brown Treesnake populations at localized scales (e.g., the higher prevalence of larger snakes-particularly males-in savanna and urban sites), the level of variability among sites within habitat types indicates little ability to make meaningful predictions about these traits at unsampled locations. Seasonal variability within sites and habitats indicates that localized population characterization should include sampling in both wet and dry seasons. Extreme values at single replicates occasionally influenced overall habitat patterns, while pooling replicates masked variability among sites. A full understanding of population characteristics should include an assessment of variability both at the site and habitat level.

Ecological considerations for the use of dispersants in oil spill response

USGS Publications Warehouse

Lindstedt-Siva, J.; Albers, P.H.; Fucik, K.W.; Maynard, N.G.; Allen, Tom E.

1984-01-01

A multidisciplinary task force with membership from government agencies, academia, and industry is developing ecologically based guidelines for dispersant use in marine and estuarine environments. The guidelines are organized by habitat type (e.g., coral reefs, rocky shores, bird habitats) and consider dispersant use to protect the habitats from impact, to mitigate impacts, and to clean the habitats after a spill. Each guideline contains a description of the habitat type covered, recommendations for dispersant use, and a background section reviewing the relevant literature. The goal is to minimize the ecological impacts of oil spills. Aesthetic, socioeconomic, and political factors are not considered, although it is recognized that these are important concerns during spill response. Use of dispersants is considered along with other appropriate countermeasures and compared with the “no cleanup” alternative.

Coyote abundance in relation to habitat characteristics in Sierra San Luis, Sonora, Mexico

Treesearch

Eduardo Ponce Guevara; Karla Pelz Serrano; Carlos A. Lopez Gonzalez

2005-01-01

Coyotes have expanded their historical distribution range because of anthropogenic activities and habitat transformation, where forests have been considered marginal habitat. We tested the relationship between vegetation structure and coyote abundance in different habitat types. We expected to find a higher abundance in open lands than in thicker areas. We used scent...

A survey of potential bald eagle nesting habitat along the Great Lakes shoreline

Treesearch

William W. Bowerman; Teryl G. Grubb; Allen J. Bath; John P. Giesy; D.V. Chip Weseloh

2005-01-01

We used fixed-wing aircraft to survey the entire shoreline and connecting channels of the five Great Lakes to determine potential nesting habitat for bald eagles (Haliaeetus leucocephalus) during 1992. Habitat was classified as either good, marginal, or unsuitable, based on six habitat attributes: (a) tree cover, (b) proximity and (c) type/amount...

Moisture as a determinant of habitat quality for a nonbreeding Neotropical migratory songbird

Treesearch

Joseph A.M. Smith; Leonard R. Reitsma; Peter P. Marra

2010-01-01

Identifying the determinants of habitat quality for a species is essential for understanding how populations are limited and regulated. Spatiotemporal variation in moisture and its influence on food availability may drive patterns of habitat occupancy and demographic outcomes. Nonbreeding migratory birds in the neotropics occupy a range of habitat types that vary with...

Pollinator diversity and reproductive success of Epipactis helleborine (L.) Crantz (Orchidaceae) in anthropogenic and natural habitats.

PubMed

Rewicz, Agnieszka; Jaskuła, Radomir; Rewicz, Tomasz; Tończyk, Grzegorz

2017-01-01

Epipactis helleborine is an Eurasian orchid species which prefers woodland environments but it may also spontaneously and successfully colonise human-made artificial and disturbed habitats such as roadsides, town parks and gardens. It is suggested that orchids colonising anthropogenic habitats are characterised by a specific set of features (e.g., large plant size, fast flower production). However, as it is not well known how pollinator diversity and reproductive success of E. helleborine differs in populations in anthropogenic habitats compared to populations from natural habitats, we wanted to compare pollinator diversity and reproductive success of this orchid species between natural and anthropogenic habitat types. Pollination biology, reproductive success and autogamy in populations of E. helleborine from anthropogenic (roadside) and natural (forest) habitats were compared. Eight populations (four natural and four human-disturbed ones) in two seasons were studied according to height of plants, length of inflorescences, as well as numbers of juvenile shoots, flowering shoots, flowers, and fruits. The number and diversity of insect pollinators were studied in one natural and two human-disturbed populations. Reproductive success (the ratio of the number of flowers to the number of fruits) in the populations from anthropogenic habitats was significantly higher than in the natural habitats. Moreover, plants from anthropogenic habitats were larger than those from natural ones. In both types of populations, the main insect pollinators were Syrphidae, Culicidae, Vespidae, Apidae and Formicidae. With respect to the type of pollinators' mouth-parts, chewing (39%), sponging (34%) and chewing-sucking (20%) pollinators prevailed in anthropogenic habitats. In natural habitats, pollinators with sponging (55%) and chewing mouth-parts (32%) dominated, while chewing-sucking and piercing-sucking insects accounted for 9% and 4% respectively. We suggest that higher reproductive success of E. helleborine in the populations from anthropogenic habitats than in the populations from natural habitats may result from a higher number of visits by pollinators and their greater species diversity, but also from the larger size of plants growing in such habitats. Moreover, our data clearly show that E. helleborine is an opportunistic species with respect to pollinators, with a wide spectrum of pollinating insects. Summarising, E. helleborine is a rare example of orchid species whose current range is not declining. Its ability to make use of anthropogenically altered habitats has allowed its significant spatial range expansion, and even successful colonisation of North America.

Evidence for habitat-driven segregation of an estuarine fish assemblage.

PubMed

Loureiro, S N; Reis-Filho, J A; Giarrizzo, T

2016-07-01

This study examined the spatio-temporal variability in fish assemblage structure and composition following monthly sampling (August 2006 to July 2007). Three estuarine zones (upper, middle and lower) of the unvegetated intertidal and subtidal channel habitats located in the Marapanim Estuary were investigated. In each of these zones, salinity, organic matter and sediment types were measured to assess any correlation between habitat types and the fish fauna. A total of 41 496 fishes, belonging to 76 species and 29 families, was recorded. Recurring changes in both species composition and trophic structure were attributed to seasonal variations, while habitat type played a more permanent role in modifying the structure of fish assemblages. Zooplanktivores (e.g. Lycengraulis grossidens) and herbivores (e.g. Cetengraulis edentulus) used the intertidal habitat almost exclusively and were associated with salinity and substratum composition (gravel, silt and mud). In contrast, benthophages (e.g. Cathorops spixii) and benthophage-ichthyophages (e.g. Cynoscion leiarchus) were primarily associated with the subtidal habitat throughout the estuary and were highly related to the presence of sandy substrata. This study highlighted the intricate roles that local factors (such as habitat connectivity) may have on the distribution of fishes at the assemblage level. As such, incorporating habitat sharing or segregation between species should be viewed as essential for any comparisons of estuaries over large geographic scales, and in particular for conservation planning and management measures. © 2016 The Fisheries Society of the British Isles.

Indicators of biodiversity and ecosystem services: A synthesis across ecosystems and spatial scales

USGS Publications Warehouse

Feld, C.K.; Da Silva, P.M.; Sousa, J.P.; De Bello, F.; Bugter, R.; Grandin, U.; Hering, D.; Lavorel, S.; Mountford, O.; Pardo, I.; Partel, M.; Rombke, J.; Sandin, Leonard; Jones, K. Bruce; Harrison, P.

2009-01-01

According to the Millennium Ecosystem Assessment, common indicators are needed to monitor the loss of biodiversity and the implications for the sustainable provision of ecosystem services. However, a variety of indicators are already being used resulting in many, mostly incompatible, monitoring systems. In order to synthesise the different indicator approaches and to detect gaps in the development of common indicator systems, we examined 531 indicators that have been reported in 617 peer-reviewed journal articles between 1997 and 2007. Special emphasis was placed on comparing indicators of biodiversity and ecosystem services across ecosystems (forests, grass- and shrublands, wetlands, rivers, lakes, soils and agro-ecosystems) and spatial scales (from patch to global scale). The application of biological indicators was found most often focused on regional and finer spatial scales with few indicators applied across ecosystem types. Abiotic indicators, such as physico-chemical parameters and measures of area and fragmentation, are most frequently used at broader (regional to continental) scales. Despite its multiple dimensions, biodiversity is usually equated with species richness only. The functional, structural and genetic components of biodiversity are poorly addressed despite their potential value across habitats and scales. Ecosystem service indicators are mostly used to estimate regulating and supporting services but generally differ between ecosystem types as they reflect ecosystem-specific services. Despite great effort to develop indicator systems over the past decade, there is still a considerable gap in the widespread use of indicators for many of the multiple components of biodiversity and ecosystem services, and a need to develop common monitoring schemes within and across habitats. Filling these gaps is a prerequisite for linking biodiversity dynamics with ecosystem service delivery and to achieving the goals of global and sub-global initiatives to halt the loss of biodiversity. ?? 2009 Oikos.

Male Kirtland's Warblers' patch-level response to landscape structure during periods of varying population size and habitat amounts

USGS Publications Warehouse

Donner, D.M.; Ribic, C.A.; Probst, J.R.

2009-01-01

Forest planners must evaluate how spatiotemporal changes in habitat amount and configuration across the landscape as a result of timber management will affect species' persistence. However, there are few long-term programs available for evaluation. We investigated the response of male Kirtland's Warbler (Dendroica kirtlandii) to 26 years of changing patch and landscape structure during a large, 26-year forestry-habitat restoration program within the warbler's primary breeding range. We found that the average density of male Kirtland's Warblers was related to a different combination of patch and landscape attributes depending on the species' regional population level and habitat amounts on the landscape (early succession jack pine (Pinus banksiana) forests; 15-42% habitat cover). Specifically, patch age and habitat regeneration type were important at low male population and total habitat amounts, while patch age and distance to an occupied patch were important at relatively high population and habitat amounts. Patch age and size were more important at increasing population levels and an intermediate amount of habitat. The importance of patch age to average male density during all periods reflects the temporal buildup and decline of male numbers as habitat suitability within the patch changed with succession. Habitat selection (i.e., preference for wildfire-regenerated habitat) and availability may explain the importance of habitat type and patch size during lower population and habitat levels. The relationship between male density and distance when there was the most habitat on the landscape and the male population was large and still increasing may be explained by the widening spatial dispersion of the increasing male population at the regional scale. Because creating or preserving habitat is not a random process, management efforts would benefit from more investigations of managed population responses to changes in spatial structure that occur through habitat gain rather than habitat loss to further our empirical understanding of general principles of the fragmentation process and habitat cover threshold effects within dynamic landscapes.

Seasonal use of shallow water habitat in the Lower Snake River reservoirs by juvenile fall Chinook salmon

USGS Publications Warehouse

Tiffan, Kenneth F.; Connor, William P.

2012-01-01

The U.S. Army Corps of Engineers (COE) is preparing a long term management plan for sediments that affect the authorized project purposes of the Lower Granite, Little Goose, Lower Monumental, and Ice Harbor reservoirs (hereafter, the lower Snake River reservoirs), and the area from the mouth of the Snake River to Ice Harbor Dam. We conducted a study from spring 2010 through winter 2011 to describe the habitat use by juvenile Chinook salmon within a selected group of shallow water habitat complexes (< 6 m deep) in the lower Snake River reservoirs to help inform the long-term plan. Natural fry and parr were present within all four shallow water habitat complexes that we studied from early spring through early summer, and parr ( = 40,345 ± 18,800 [error bound]) were more abundant than fry ( = 24,615 ± 5,701). Water < 2 m deep was highly used for rearing by natural fall Chinook salmon subyearlings (fry and parr combined; hereafter natural subyearlings) based on duration of use and relative group abundances during spring and summer, whereas the 2–6 m depth interval was more highly used by migratory hatchery fall Chinook salmon subyearlings and spring, summer, and fall Chinook salmon yearlings. Overall mean spring-summer apparent density of natural subyearlings was 15.5 times higher within the < 2 m depth interval than within the 2–6 m depth interval. Density of natural subyearlings also decreased as the distance a given shallow water habitat complex was located from the riverine spawning areas increased. Reservoir-type juveniles (or fish likely destined to become reservoir-type juveniles) were present in the lower Snake River reservoirs from fall 2010 through winter 2011; however, use of shallow water habitat by reservoir-type juveniles was limited during our study. We only collected 38 reservoir-type juveniles in shallow water habitat sites in beach and lampara seines during the fall. Radiotelemetry data revealed that though many tagged fish passed shallow water habitat sites, relatively few fish entered them and the median time fish spent within a given site was less than 1.4 h. Fish located by mobile tracking away from study sites were pelagically oriented, and generally not found over shallow water or close to shore. The findings in this report: (1) support the selection of natural fall Chinook subyearlings as the indicator group for determining the potential benefits of using dredge spoils to create shallow water habitat, (2) provide evidence for shallow water habitat use by natural subyearlings, (3) provide evidence against large-scale use of shallow water habitat by reservoir-type juveniles, (4) suggest that the depth criterion for defining shallow water habitat (i.e., < 6 m deep) warrants reconsideration, and (5) provide guidance for when to dredge and create shallow water habitat. Future research on habitat preference, feeding ecology, the food web, and intra-specific competition would help to better inform the long-term management plan.

Vulnerability Assessment of Mangrove Habitat to the Variables of the Oceanography Using CVI Method (Coastal Vulnerability Index) in Trimulyo Mangrove Area, Genuk District, Semarang

NASA Astrophysics Data System (ADS)

Ahmad, Rifandi Raditya; Fuad, Muhammad

2018-02-01

Some functions of mangrove areas in coastal ecosystems as a green belt, because mangrove serves as a protector of the beach from the sea waves, as a good habitat for coastal biota and for nutrition supply. Decreased condition or degradation of mangrove habitat caused by several oceanographic factors. Mangrove habitats have some specific characteristics such as salinity, tides, and muddy substrates. Considering the role of mangrove area is very important, it is necessary to study about the potential of mangrove habitat so that the habitat level of mangrove habitat in the east coast of Semarang city is known. The purpose of this research is to obtain an index and condition of habitat of mangrove habitat at location of research based on tidal, salinity, substrate type, coastline change. Observation by using purposive method and calculation of habitat index value of mangrove habitat using CVI (Coastal Vulnerability Index) method with scores divided into 3 groups namely low, medium and high. The results showed that there is a zone of research belonging to the medium vulnerability category with the most influential variables is because there is abrasion that sweeps the mangrove substrate. Trimulyo mangrove habitat has high vulnerable variable of tidal frequency, then based on value variable Salinity is categorized as low vulnerability, whereas for mangrove habitat vulnerability based on variable type of substrate belong to low and medium vulnerability category. The CVI values of mangrove habitats divided into zones 1; 2; and 3 were found to varying values of 1.54; 3.79; 1.09, it indicates that there is a zone with the vulnerability of mangrove habitat at the study site belonging to low and medium vulnerability category.

Deployment Area Selection and Land Withdrawal/Acquisition. Chapter 4. M-X/MPS (M-X/Multiple Protective Shelter). Volume 1. Environmental Consequences to the Study Regions and Operating Base Vicinities.

DTIC Science & Technology

1981-10-02

to the point of energy imbalance and declining reproductive rates. Increased human population would also increase poaching of pronghorn in areas...reduced. Such effects, however, could be mitigated as discussed below and in ETR-38. Increased human activity, including poaching , harassment, habitat...when intense activity would be widespread in their habitat. Mortality resulting from habitat loss and poaching would decrease herd size during 4-205 4

Deployment Area Selection and Land Withdrawal/Acquisition. M-X/MPS (M-X/Multiple Protective Shelter) Environmental Technical Report. Aquatic Habitats and Biota.

DTIC Science & Technology

1981-10-02

section of resident and nonresident sportsmen. Aquatic habitats provide water and forage for terrestrial wildlife, particularly birds and the larger...swimming, camping, and picnicking areas. Bird and wildlife observation in the study area is usually best near aquatic habitats. Since surface waters are...inundated by surface or groundwater with a frequency sufficient to support a prevalence of vegetative or aquatic life that requires saturated or seasonally

A New Multi-Basin Calibration for Estimating Paleo-Temperature Using Mg/Ca from Tests of Neogloboquadrina dutertrei

NASA Astrophysics Data System (ADS)

Collins, M. S.; Hertzberg, J. E.; Mekik, F.; Schmidt, M. W.

2017-12-01

Based on the thermodynamics of solid-solution substitution of Mg for Ca in biogenic calcite, magnesium to calcium ratios in planktonic foraminifera have been proposed as a means by which variations in habitat water temperatures can be reconstructed. Doing this accurately has been a problem, however, as we demonstrate that various calibration equations provide disparate temperature estimates from the same Mg/Ca dataset. We examined both new and published data to derive a globally applicable temperature-Mg/Ca relationship and from this relationship to accurately predict habitat depth for Neogloboquadrina dutertrei - a deep chlorophyll maximum dweller. N. dutertrei samples collected from Atlantic core tops were analyzed for trace element compositions at Texas A&M University, and the measured Mg/Ca ratios were used to predict habitat temperatures using multiple pre-existing calibration equations. When combining Atlantic and previously published Pacific Mg/Ca datasets for N. dutertrei, a notable dissolution effect was evident. To overcome this issue, we used the G. menardii Fragmentation Index (MFI) to account for dissolution and generated a multi-basin temperature equation using multiple linear regression to predict habitat temperature. However, the correlations between Mg/Ca and temperature, as well as the calculated MFI percent dissolved, suggest that N. dutertrei Mg/Ca ratios are affected equally by both variables. While correcting for dissolution makes habitat depth estimation more accurate, the lack of a definitively strong correlation between Mg/Ca and temperature is likely an effect of variable habitat depth for this species because most calibration equations have assumed a uniform habitat depth for this taxon.

Spatial variability of Chinook salmon spawning distribution and habitat preferences

USGS Publications Warehouse

Cram, Jeremy M.; Torgersen, Christian E.; Klett, Ryan S.; Pess, George R.; May, Darran; Pearsons, Todd N.; Dittman, Andrew H.

2017-01-01

We investigated physical habitat conditions associated with the spawning sites of Chinook Salmon Oncorhynchus tshawytscha and the interannual consistency of spawning distribution across multiple spatial scales using a combination of spatially continuous and discrete sampling methods. We conducted a census of aquatic habitat in 76 km of the upper main-stem Yakima River in Washington and evaluated spawning site distribution using redd survey data from 2004 to 2008. Interannual reoccupation of spawning areas was high, ranging from an average Pearson’s correlation of 0.62 to 0.98 in channel subunits and 10-km reaches, respectively. Annual variance in the interannual correlation of spawning distribution was highest in channel units and subunits, but it was low at reach scales. In 13 of 15 models developed for individual years (2004–2008) and reach lengths (800 m, 3 km, 6 km), stream power and depth were the primary predictors of redd abundance. Multiple channels and overhead cover were patchy but were important secondary and tertiary predictors of reach-scale spawning site selection. Within channel units and subunits, pool tails and thermal variability, which may be associated with hyporheic exchange, were important predictors of spawning. We identified spawning habitat preferences within reaches and channel units that are relevant for salmonid habitat restoration planning. We also identified a threshold (i.e., 2-km reaches) beyond which interannual spawning distribution was markedly consistent, which may be informative for prioritizing habitat restoration or conservation. Management actions may be improved through enhanced understanding of spawning habitat preferences and the consistency with which Chinook Salmon reoccupy spawning areas at different spatial scales.

Spatial variation in breeding habitat selection by Cerulean Warblers (Setophaga cerulea) throughout the Appalachian Mountains

USGS Publications Warehouse

Boves, Than J.; Buehler, David A.; Sheehan, James; Wood, Petra Bohall; Rodewald, Amanda D.; Larkin, Jeffrey L.; Keyser, Patrick D.; Newell, Felicity L.; Evans, Andrea; George, Gregory A.; Wigley, T.B.

2013-01-01

Studies of habitat selection are often of limited utility because they focus on small geographic areas, fail to examine behavior at multiple scales, or lack an assessment of the fitness consequences of habitat decisions. These limitations can hamper the identification of successful site-specific management strategies, which are urgently needed for severely declining species like Cerulean Warblers (Setophaga cerulea). We assessed how breeding habitat decisions made by Cerulean Warblers at multiple scales, and the subsequent effects of these decisions on nest survival, varied across the Appalachian Mountains. Selection for structural habitat features varied substantially among areas, particularly at the territory scale. Males within the least-forested landscapes selected microhabitat features that reflected more closed-canopy forest conditions, whereas males in highly forested landscapes favored features associated with canopy disturbance. Selection of nest-patch and nest-site attributes by females was more consistent across areas, with females selecting for increased tree size and understory cover and decreased basal area and midstory cover. Floristic preferences were similar across study areas: White Oak (Quercus alba), Cucumber-tree (Magnolia acuminata), and Sugar Maple (Acer saccharum) were preferred as nest trees, whereas red oak species (subgenus Erythrobalanus) and Red Maple (A. rubrum) were avoided. The habitat features that were related to nest survival also varied among study areas, and preferred features were negatively associated with nest survival at one area. Thus, our results indicate that large-scale spatial heterogeneity may influence local habitat-selection behavior and that it may be necessary to articulate site-specific management strategies for Cerulean Warblers.

Conservation of northern bobwhite on private lands in Georgia, USA under uncertainty about landscape-level habitat effects

USGS Publications Warehouse

Howell, J.E.; Moore, C.T.; Conroy, M.J.; Hamrick, R.G.; Cooper, R.J.; Thackston, R.E.; Carroll, J.P.

2009-01-01

Large-scale habitat enhancement programs for birds are becoming more widespread, however, most lack monitoring to resolve uncertainties and enhance program impact over time. Georgia?s Bobwhite Quail Initiative (BQI) is a competitive, proposal-based system that provides incentives to landowners to establish habitat for northern bobwhites (Colinus virginianus). Using data from monitoring conducted in the program?s first years (1999?2001), we developed alternative hierarchical models to predict bobwhite abundance in response to program habitat modifications on local and regional scales. Effects of habitat and habitat management on bobwhite population response varied among geographical scales, but high measurement variability rendered the specific nature of these scaled effects equivocal. Under some models, BQI had positive impact at both local farm scales (1, 9 km2), particularly when practice acres were clustered, whereas other credible models indicated that bird response did not depend on spatial arrangement of practices. Thus, uncertainty about landscape-level effects of management presents a challenge to program managers who must decide which proposals to accept. We demonstrate that optimal selection decisions can be made despite this uncertainty and that uncertainty can be reduced over time, with consequent improvement in management efficacy. However, such an adaptive approach to BQI program implementation would require the reestablishment of monitoring of bobwhite abundance, an effort for which funding was discontinued in 2002. For landscape-level conservation programs generally, our approach demonstrates the value in assessing multiple scales of impact of habitat modification programs, and it reveals the utility of addressing management uncertainty through multiple decision models and system monitoring.

Fire ecology of the forest habitat types of eastern Idaho and western Wyoming

Treesearch

Anne F. Bradley; William C. Fischer; Nonan V. Noste

1992-01-01

Provides information on fire as an ecological factor in the forest habitat types occurring in eastern Idaho and western Wyoming. Identifies Fire Groups based on fire's role in forest succession. Describes forest fuels and suggests considerations for fire management.

Bird Diversity and Structure in Different Land-use Types in Lowland South-Central Mindanao, Philippines

PubMed Central

Tanalgo, Krizler Cejuela; Pineda, John Arislyn Fuentes; Agravante, Maricel Estolloso; Amerol, Zabide Mamalo

2015-01-01

Birds are crucial to maintaining the balance of many ecosystems by providing various ecological services. The diversity of birds and their feeding guilds in different land-use types were investigated in south-central Mindanao to elucidate the effect of disturbance and habitat modification on bird communities. Point count method was employed to identify birds in three habitat types: i) agroforests; ii) ricefields; iii) roads and heavily disturbed areas. A total of 1114 bird sightings were recorded that included 33 species of 24 families; of these, 3 were Philippine endemics, and 5 were migrant species. Among all of the habitat types, the highest species diversity was found in agroforests (1/D = 16.148), and the lowest was recorded from roads and heavily disturbed habitats. The species composition of agroforests was more similar to ricefields than to areas with high levels of disturbance, such as roads. The characteristic of the vegetation and the availability of food resources may be vital to the diversity of birds in every habitat as evidenced by the high species richness of frugivores and insectivores in agroforests and ricefields, respectively, where food source is largely available. The observation of Streptopelia tranquebarica was a new record for Mindanao, and it was particularly sighted in ricefields. Therefore, this study indicates that land-use change and modification may alter bird diversity structure, and the maintenance of the vegetation in land-use types as food and resource, and as habitat is essential to the conservation of the native and ecologically-important bird species in south-central Mindanao. PMID:26868712

Bird Diversity and Structure in Different Land-use Types in Lowland South-Central Mindanao, Philippines.

PubMed

Tanalgo, Krizler Cejuela; Pineda, John Arislyn Fuentes; Agravante, Maricel Estolloso; Amerol, Zabide Mamalo

2015-12-01

Birds are crucial to maintaining the balance of many ecosystems by providing various ecological services. The diversity of birds and their feeding guilds in different land-use types were investigated in south-central Mindanao to elucidate the effect of disturbance and habitat modification on bird communities. Point count method was employed to identify birds in three habitat types: i) agroforests; ii) ricefields; iii) roads and heavily disturbed areas. A total of 1114 bird sightings were recorded that included 33 species of 24 families; of these, 3 were Philippine endemics, and 5 were migrant species. Among all of the habitat types, the highest species diversity was found in agroforests (1/D = 16.148), and the lowest was recorded from roads and heavily disturbed habitats. The species composition of agroforests was more similar to ricefields than to areas with high levels of disturbance, such as roads. The characteristic of the vegetation and the availability of food resources may be vital to the diversity of birds in every habitat as evidenced by the high species richness of frugivores and insectivores in agroforests and ricefields, respectively, where food source is largely available. The observation of Streptopelia tranquebarica was a new record for Mindanao, and it was particularly sighted in ricefields. Therefore, this study indicates that land-use change and modification may alter bird diversity structure, and the maintenance of the vegetation in land-use types as food and resource, and as habitat is essential to the conservation of the native and ecologically-important bird species in south-central Mindanao.

Seafloor habitat mapping of the New York Bight incorporating sidescan sonar data

USGS Publications Warehouse

Lathrop, R.G.; Cole, M.; Senyk, N.; Butman, B.

2006-01-01

The efficacy of using sidescan sonar imagery, image classification algorithms and geographic information system (GIS) techniques to characterize the seafloor bottom of the New York Bight were assessed. The resulting seafloor bottom type map was compared with fish trawl survey data to determine whether there were any discernable habitat associations. An unsupervised classification with 20 spectral classes was produced using the sidescan sonar imagery, bathymetry and secondarily derived spatial heterogeneity to characterize homogenous regions within the study area. The spectral classes, geologic interpretations of the study region, bathymetry and a bottom landform index were used to produce a seafloor bottom type map of 9 different bottom types. Examination of sediment sample data by bottom type indicated that each bottom type class had a distinct composition of sediments. Analysis of adult summer flounder, Paralichthys dentatus, and adult silver hake, Merluccius bilinearis, presence/absence data from trawl surveys did not show evidence of strong associations between the species distributions and seafloor bottom type. However, the absence of strong habitat associations may be more attributable to the coarse scale and geographic uncertainty of the trawl sampling data than conclusive evidence that no habitat associations exist for these two species. ?? 2006 Elsevier Ltd. All rights reserved.

Biofilm and Diatom Succession on Polyethylene (PE) and Biodegradable Plastic Bags in Two Marine Habitats: Early Signs of Degradation in the Pelagic and Benthic Zone?

PubMed Central

Laforsch, Christian; Weber, Miriam

2015-01-01

The production of biodegradable plastic is increasing. Given the augmented littering of these products an increasing input into the sea is expected. Previous laboratory experiments have shown that degradation of plastic starts within days to weeks. Little is known about the early composition and activity of biofilms found on biodegradable and conventional plastic debris and its correlation to degradation in the marine environment. In this study we investigated the early formation of biofilms on plastic shopper bags and its consequences for the degradation of plastic. Samples of polyethylene and biodegradable plastic were tested in the Mediterranean Sea for 15 and 33 days. The samples were distributed equally to a shallow benthic (sedimentary seafloor at 6 m water depth) and a pelagic habitat (3 m water depth) to compare the impact of these different environments on fouling and degradation. The amount of biofilm increased on both plastic types and in both habitats. The diatom abundance and diversity differed significantly between the habitats and the plastic types. Diatoms were more abundant on samples from the pelagic zone. We anticipate that specific surface properties of the polymer types induced different biofilm communities on both plastic types. Additionally, different environmental conditions between the benthic and pelagic experimental site such as light intensity and shear forces may have influenced unequal colonisation between these habitats. The oxygen production rate was negative for all samples, indicating that the initial biofilm on marine plastic litter consumes oxygen, regardless of the plastic type or if exposed in the pelagic or the benthic zone. Mechanical tests did not reveal degradation within one month of exposure. However, scanning electron microscopy (SEM) analysis displayed potential signs of degradation on the plastic surface, which differed between both plastic types. This study indicates that the early biofilm formation and composition are affected by the plastic type and habitat. Further, it reveals that already within two weeks biodegradable plastic shows signs of degradation in the benthic and pelagic habitat. PMID:26394047

Biofilm and Diatom Succession on Polyethylene (PE) and Biodegradable Plastic Bags in Two Marine Habitats: Early Signs of Degradation in the Pelagic and Benthic Zone?

PubMed

Eich, Andreas; Mildenberger, Tobias; Laforsch, Christian; Weber, Miriam

2015-01-01

The production of biodegradable plastic is increasing. Given the augmented littering of these products an increasing input into the sea is expected. Previous laboratory experiments have shown that degradation of plastic starts within days to weeks. Little is known about the early composition and activity of biofilms found on biodegradable and conventional plastic debris and its correlation to degradation in the marine environment. In this study we investigated the early formation of biofilms on plastic shopper bags and its consequences for the degradation of plastic. Samples of polyethylene and biodegradable plastic were tested in the Mediterranean Sea for 15 and 33 days. The samples were distributed equally to a shallow benthic (sedimentary seafloor at 6 m water depth) and a pelagic habitat (3 m water depth) to compare the impact of these different environments on fouling and degradation. The amount of biofilm increased on both plastic types and in both habitats. The diatom abundance and diversity differed significantly between the habitats and the plastic types. Diatoms were more abundant on samples from the pelagic zone. We anticipate that specific surface properties of the polymer types induced different biofilm communities on both plastic types. Additionally, different environmental conditions between the benthic and pelagic experimental site such as light intensity and shear forces may have influenced unequal colonisation between these habitats. The oxygen production rate was negative for all samples, indicating that the initial biofilm on marine plastic litter consumes oxygen, regardless of the plastic type or if exposed in the pelagic or the benthic zone. Mechanical tests did not reveal degradation within one month of exposure. However, scanning electron microscopy (SEM) analysis displayed potential signs of degradation on the plastic surface, which differed between both plastic types. This study indicates that the early biofilm formation and composition are affected by the plastic type and habitat. Further, it reveals that already within two weeks biodegradable plastic shows signs of degradation in the benthic and pelagic habitat.

Home range and habitat use of juvenile green turtles (Chelonia mydas) in the northern Gulf of Mexico

USGS Publications Warehouse

Lamont, Margaret M.; Fujisaki, Ikuko; Stephens, Brail S.; Hackett, Caitlin

2015-01-01

Conclusions: Green turtles in St. Joseph Bay have relatively small home ranges and many contain multiple activity centers. The frequent use of channels by turtles suggests bathymetry plays a major role in habitat selection of juvenile green turtles, particularly as temperatures drop in winter. The quality and density of seagrass habitat in St. Joseph Bay and its proximity to deep channels appears to provide ideal conditions for juvenile greens. The results of this study help define characteristics of foraging habitat utilized by juvenile greens in the northern Gulf of Mexico that managers can use in creating protected areas such as aquatic preserves.

Mechanistic models as a transferable framework for projecting effects of habitat change on production and delivery of ecosystem services

EPA Science Inventory

Drawing a link between habitat change and the production and delivery of ecosystem services is a priority in coastal estuarine ecosystems. Mechanistic modeling tools are highly functional for exploring this link because they allow for the synthesis of multiple ecological and beh...

A COMPARISON OF SINGLE AND MULTIPLE HABITAT RAPID BIOASSESSMENT SAMPLING METHODS FOR MACROINVERTEBRATES IN PIEDMONT AND NORTHERN PIEDMONT STREAMS

EPA Science Inventory

Stream macroinvertebrate collection methods described in the Rapid Bioassessment Protocols (RBPs) have been used widely throughout the U.S. The first edition of the RBP manual in 1989 described a single habitat approach that focused on riffles and runs, where macroinvertebrate d...

Multi-taxa population connectivity in the northern Rocky Mountains

Treesearch

Samuel A. Cushman; Erin L. Landguth

2012-01-01

Effective broad-spectrum biodiversity conservation requires that conservation strategies simultaneously meet the needs of multiple species. However, little is known about how maintaining habitat connectivity for one species or species group may also act as an umbrella for other species. We evaluated the degree to which predicted connected habitat for each of 144...

Global climate change and fragmentation of native brook trout distribution in the southern Appalachian Mountains

Treesearch

Patricia A. Flebbe

1997-01-01

Current distributions of native brook trout (Salvelinus fontinalis) in the Southern Appalachians are restricted to upper elevations by multiple factors, including habitat requirements, introduced rainbow (Oncorhynchus mykiss) and brown (Salmo trutta) trout, and other human activities. Present-day distribution of brook trout habitat is already fragmented. Increased...

Evaluating habitat associations of a fish assemblages at multiple scales in a minimally disturbed stream on the Edwards Plateau, Central Texas

USGS Publications Warehouse

Cheek, Brandon D.; Grabowski, Timothy B.; Bean, Preston T.; Groeschel, Jillian R.; Magnelia, Stephan J.

2016-01-01

Low-cost side-scan sonar proved to be a cost-effective means of acquiring information on the habitat availability of the entire river length and allowed the assessment of how a full suite of riverscape-level variables influenced local fish assemblage structure.

Northern goshawk habitat: an intersection of science, management, and conservation

Treesearch

Richard T. Reynolds; Russell T. Graham; Douglas A. Boyce

2008-01-01

We responded to the claim by Greenwald et al. (2005) that the management recommendations for the northern goshawk in the Southwestern United States (MRNG; Reynolds et al. 1992), a food web-based conservation plan that incorporated both northern goshawk (Accipiter gentilis) and multiple prey habitats, may be inadequate to protect goshawks. Greenwald...

Den use and selection by northern flying squirrels in fragmented landscapes

Treesearch

Sanjay Pyare; Winston P. Smith; Colin S. Shanley

2010-01-01

We studied den use and den-habitat selection by the Prince of Wales Island flying squirrel (Glaucomys sabrinus griseifrons) at multiple spatial scales in fragmented temperate rain-forest habitats because of the role dens play in the distribution, reproduction, and population density of this endemic subspecies. We observed differences in spatial...

Long-term habitat changes in a protected area: Implications for herpetofauna habitat management and restoration.

PubMed

Markle, Chantel E; Chow-Fraser, Gillian; Chow-Fraser, Patricia

2018-01-01

Point Pelee National Park, located at the southern-most tip of Canada's mainland, historically supported a large number of herpetofauna species; however, despite nearly a century of protection, six snake and five amphibian species have disappeared, and remaining species-at-risk populations are thought to be in decline. We hypothesized that long-term changes in availability and distribution of critical habitat types may have contributed to the disappearance of herpetofauna. To track habitat changes we used aerial image data spanning 85 years (1931-2015) and manually digitized and classified image data using a standardized framework. Change-detection analyses were used to evaluate the relative importance of proportionate loss and fragmentation of 17 habitat types. Marsh habitat diversity and aquatic connectivity has declined since 1931. The marsh matrix transitioned from a graminoid and forb shallow marsh interspersed with water to a cattail dominated marsh, altering critical breeding, foraging, and overwintering habitat. Reduced diversity of marsh habitats appears to be linked to the expansion of invasive Phragmites australis, which invaded prior to 2000. Loss of open habitats such as savanna and meadow has reduced availability of high quality thermoregulation habitat for reptiles. Restoration of the northwestern region and tip of Point Pelee National Park to a mixed landscape of shallow wetlands (cattail, graminoid, forb, open water) and eradication of dense Phragmites stands should improve habitat diversity. Our results suggest that long-term landscape changes resulting from habitat succession and invasive species can negatively affect habitat suitability for herpetofauna and protection of land alone does not necessarily equate to protection of sensitive herpetofauna.

Long-term habitat changes in a protected area: Implications for herpetofauna habitat management and restoration

PubMed Central

Chow-Fraser, Gillian; Chow-Fraser, Patricia

2018-01-01

Point Pelee National Park, located at the southern-most tip of Canada’s mainland, historically supported a large number of herpetofauna species; however, despite nearly a century of protection, six snake and five amphibian species have disappeared, and remaining species-at-risk populations are thought to be in decline. We hypothesized that long-term changes in availability and distribution of critical habitat types may have contributed to the disappearance of herpetofauna. To track habitat changes we used aerial image data spanning 85 years (1931–2015) and manually digitized and classified image data using a standardized framework. Change-detection analyses were used to evaluate the relative importance of proportionate loss and fragmentation of 17 habitat types. Marsh habitat diversity and aquatic connectivity has declined since 1931. The marsh matrix transitioned from a graminoid and forb shallow marsh interspersed with water to a cattail dominated marsh, altering critical breeding, foraging, and overwintering habitat. Reduced diversity of marsh habitats appears to be linked to the expansion of invasive Phragmites australis, which invaded prior to 2000. Loss of open habitats such as savanna and meadow has reduced availability of high quality thermoregulation habitat for reptiles. Restoration of the northwestern region and tip of Point Pelee National Park to a mixed landscape of shallow wetlands (cattail, graminoid, forb, open water) and eradication of dense Phragmites stands should improve habitat diversity. Our results suggest that long-term landscape changes resulting from habitat succession and invasive species can negatively affect habitat suitability for herpetofauna and protection of land alone does not necessarily equate to protection of sensitive herpetofauna. PMID:29444129

Fine scale movements and habitat use of black brant during the flightless Wing Molt in Arctic Alaska

USGS Publications Warehouse

Lewis, Tyler L.; Flint, Paul L.; Derksen, Dirk V.; Schmutz, Joel A.

2011-01-01

Thousands of Black Brant (Branta bernicla nigricans) migrate annually to the Teshekpuk Lake Special Area (TLSA), Alaska, to undergo the flightless wing molt on tundra lakes and wetlands. GPS transmitters were attached to Brant over two summers (2007–2008) to examine patterns of movement and habitat use of molting Brant, including variation by habitat type, year and body mass. Molting Brant were located an average of 31 ± 1 m (SE) from shore and this distance did not vary across any of the explanatory variables. Brant moved an average of 123 ± 3 m hr-1 while flightless. Movement rates varied by year, averaging 22 ± 12 m hr-1 faster in 2008, and across habitat types, averaging 22 ± 13 m hr-1 faster in inland versus coastal and estuarine habitats. Two kernel home ranges were estimated: entire home range, which encompassed the complete 95% probability contour, and shoreline home range, which included only shoreline areas used by molting Brant. Entire home range (x bar = 15.1 ± 2.2 km2) was negatively correlated with body mass, suggesting that heavier individuals have more body reserves to contribute to feather growth and thereby require less food and smaller home ranges. Conversely, shoreline home range (x bar = 4.3 ± 0.6 km2) did not vary by body mass, but rather by habitat type, being larger in estuarine habitats. The complex shorelines and numerous deltaic islands of estuarine habitats offer more shoreline per area than either coastal or inland habitats. Brant appear to have limited ability to adjust their home range size or forage further from shore in response to variable food resources across years or habitats, instead altering their movement rate. Given this apparent lack of behavioral flexibility, Brant may be sensitive to development-related disturbances or habitat losses at molt sites in the TLSA.

Spillover from adjacent crop and forest habitats shapes carabid beetle assemblages in fragmented semi-natural grasslands.

PubMed

Schneider, Gudrun; Krauss, Jochen; Boetzl, Fabian A; Fritze, Michael-Andreas; Steffan-Dewenter, Ingolf

2016-12-01

Semi-natural grasslands in Europe are insect biodiversity hotspots and important source habitats delivering ecosystem services to adjacent agricultural land by species spillover. However, this spillover might also occur in the opposite direction, affecting the diversity of semi-natural grasslands. This opposite spillover has got little attention in scientific literature even though generalist species penetrating into the grasslands can affect local biotic interactions, community composition and the conservation value of grassland habitats. In this study, we examined spillover effects from two different adjacent habitat types on carabid beetle assemblages in 20 semi-natural calcareous grasslands. The grasslands were either adjacent to a cereal crop field or to a coniferous forest. We found distinct differences in carabid beetle assemblages in calcareous grasslands depending on adjacent habitat type. Species richness and activity density were higher, but the evenness was lower in calcareous grasslands adjacent to crop fields compared with calcareous grasslands adjacent to coniferous forests. Further, we found a strong spillover of carabid beetles from adjacent crop fields after crop harvest, which may result in transiently increased predation pressure and resource competition in calcareous grasslands. Our results highlight that species composition, diversity and presumably ecosystem functions within semi-natural habitats are affected by the type and management of surrounding habitats. This needs to be considered by nature conservation measures, which aim to protect the unique insect communities of semi-natural European grasslands.

Impacts of Human Recreation on Brown Bears (Ursus arctos): A Review and New Management Tool.

PubMed

Fortin, Jennifer K; Rode, Karyn D; Hilderbrand, Grant V; Wilder, James; Farley, Sean; Jorgensen, Carole; Marcot, Bruce G

2016-01-01

Increased popularity of recreational activities in natural areas has led to the need to better understand their impacts on wildlife. The majority of research conducted to date has focused on behavioral effects from individual recreations, thus there is a limited understanding of the potential for population-level or cumulative effects. Brown bears (Ursus arctos) are the focus of a growing wildlife viewing industry and are found in habitats frequented by recreationists. Managers face difficult decisions in balancing recreational opportunities with habitat protection for wildlife. Here, we integrate results from empirical studies with expert knowledge to better understand the potential population-level effects of recreational activities on brown bears. We conducted a literature review and Delphi survey of brown bear experts to better understand the frequencies and types of recreations occurring in bear habitats and their potential effects, and to identify management solutions and research needs. We then developed a Bayesian network model that allows managers to estimate the potential effects of recreational management decisions in bear habitats. A higher proportion of individual brown bears in coastal habitats were exposed to recreation, including photography and bear-viewing than bears in interior habitats where camping and hiking were more common. Our results suggest that the primary mechanism by which recreation may impact brown bears is through temporal and spatial displacement with associated increases in energetic costs and declines in nutritional intake. Killings in defense of life and property were found to be minimally associated with recreation in Alaska, but are important considerations in population management. Regulating recreation to occur predictably in space and time and limiting recreation in habitats with concentrated food resources reduces impacts on food intake and may thereby, reduce impacts on reproduction and survival. Our results suggest that decisions managers make about regulating recreational activities in time and space have important consequences for bear populations. The Bayesian network model developed here provides a new tool for managers to balance demands of multiple recreational activities while supporting healthy bear populations.

The impacts of human recreation on brown bears (Ursus arctos): A review and new management tool

USGS Publications Warehouse

Fortin-noreus, Jennifer; Rode, Karyn D.; Hilderbrand, Grant V.; Wilder, James; Farley, Sean; Jorgensen, Carole; Marcot, Bruce G.

2016-01-01

Increased popularity of recreational activities in natural areas has led to the need to better understand their impacts on wildlife. The majority of research conducted to date has focused on behavioral effects from individual recreations, thus there is a limited understanding of the potential for population-level or cumulative effects. Brown bears (Ursus arctos) are the focus of a growing wildlife viewing industry and are found in habitats frequented by recreationists. Managers face difficult decisions in balancing recreational opportunities with habitat protection for wildlife. Here, we integrate results from empirical studies with expert knowledge to better understand the potential population-level effects of recreational activities on brown bears. We conducted a literature review and Delphi survey of brown bear experts to better understand the frequencies and types of recreations occurring in bear habitats and their potential effects, and to identify management solutions and research needs. We then developed a Bayesian network model that allows managers to estimate the potential effects of recreational management decisions in bear habitats. A higher proportion of individual brown bears in coastal habitats were exposed to recreation, including photography and bear-viewing than bears in interior habitats where camping and hiking were more common. Our results suggest that the primary mechanism by which recreation may impact brown bears is through temporal and spatial displacement with associated increases in energetic costs and declines in nutritional intake. Killings in defense of life and property were found to be minimally associated with recreation in Alaska, but are important considerations in population management. Regulating recreation to occur predictably in space and time and limiting recreation in habitats with concentrated food resources reduces impacts on food intake and may thereby, reduce impacts on reproduction and survival. Our results suggest that decisions managers make about regulating recreational activities in time and space have important consequences for bear populations. The Bayesian network model developed here provides a new tool for managers to balance demands of multiple recreational activities while supporting healthy bear populations.

Impacts of Human Recreation on Brown Bears (Ursus arctos): A Review and New Management Tool

PubMed Central

Fortin, Jennifer K.; Rode, Karyn D.; Hilderbrand, Grant V.; Wilder, James; Farley, Sean; Jorgensen, Carole; Marcot, Bruce G.

2016-01-01

Increased popularity of recreational activities in natural areas has led to the need to better understand their impacts on wildlife. The majority of research conducted to date has focused on behavioral effects from individual recreations, thus there is a limited understanding of the potential for population-level or cumulative effects. Brown bears (Ursus arctos) are the focus of a growing wildlife viewing industry and are found in habitats frequented by recreationists. Managers face difficult decisions in balancing recreational opportunities with habitat protection for wildlife. Here, we integrate results from empirical studies with expert knowledge to better understand the potential population-level effects of recreational activities on brown bears. We conducted a literature review and Delphi survey of brown bear experts to better understand the frequencies and types of recreations occurring in bear habitats and their potential effects, and to identify management solutions and research needs. We then developed a Bayesian network model that allows managers to estimate the potential effects of recreational management decisions in bear habitats. A higher proportion of individual brown bears in coastal habitats were exposed to recreation, including photography and bear-viewing than bears in interior habitats where camping and hiking were more common. Our results suggest that the primary mechanism by which recreation may impact brown bears is through temporal and spatial displacement with associated increases in energetic costs and declines in nutritional intake. Killings in defense of life and property were found to be minimally associated with recreation in Alaska, but are important considerations in population management. Regulating recreation to occur predictably in space and time and limiting recreation in habitats with concentrated food resources reduces impacts on food intake and may thereby, reduce impacts on reproduction and survival. Our results suggest that decisions managers make about regulating recreational activities in time and space have important consequences for bear populations. The Bayesian network model developed here provides a new tool for managers to balance demands of multiple recreational activities while supporting healthy bear populations. PMID:26731652

Wildlife habitats in managed rangelands—the Great Basin of southeastern Oregon: pronghorns.

Treesearch

Robert R. Kindschy; Charles S. Undstrom; James D. Yoakum

1982-01-01

The sagebrush steppe of the Great Basin in southeastern Oregon is peripheral habitat for pronghorns, but the quality of the habitat can be improved through rangeland management. The relationship between pronghorns and their habitat components—the availability of water, type of forage, barriers that restrict the movement of herds, and the effect of grazing by livestock-...

Multivariate model of female black bear habitat use for a Geographic Information System

USGS Publications Warehouse

Clark, Joseph D.; Dunn, James E.; Smith, Kimberly G.

1993-01-01

Simple univariate statistical techniques may not adequately assess the multidimensional nature of habitats used by wildlife. Thus, we developed a multivariate method to model habitat-use potential using a set of female black bear (Ursus americanus) radio locations and habitat data consisting of forest cover type, elevation, slope, aspect, distance to roads, distance to streams, and forest cover type diversity score in the Ozark Mountains of Arkansas. The model is based on the Mahalanobis distance statistic coupled with Geographic Information System (GIS) technology. That statistic is a measure of dissimilarity and represents a standardized squared distance between a set of sample variates and an ideal based on the mean of variates associated with animal observations. Calculations were made with the GIS to produce a map containing Mahalanobis distance values within each cell on a 60- × 60-m grid. The model identified areas of high habitat use potential that could not otherwise be identified by independent perusal of any single map layer. This technique avoids many pitfalls that commonly affect typical multivariate analyses of habitat use and is a useful tool for habitat manipulation or mitigation to favor terrestrial vertebrates that use habitats on a landscape scale.

Condition assessment of tidal wetlands of Washington, Oregon and California

EPA Science Inventory

EPA and State partners conducted an assessment of the condition of estuarine tidal wetlands of Washington, Oregon and California at 217 sites during the summer of 2002. Dominant habitat types varied, although unvegetated sand or mud flats were the dominant habitat types for all...

Macroalgal Composition Determines the Structure of Benthic Assemblages Colonizing Fragmented Habitats.

PubMed

Matias, Miguel G; Arenas, Francisco; Rubal, Marcos; Pinto, Isabel S

2015-01-01

Understanding the consequences of fragmentation of coastal habitats is an important topic of discussion in marine ecology. Research on the effects of fragmentation has revealed complex and context-dependent biotic responses, which prevent generalizations across different habitats or study organisms. The effects of fragmentation in marine environments have been rarely investigated across heterogeneous habitats, since most studies have focused on a single type of habitat or patch. In this study, we assessed the effects of different levels of fragmentation (i.e. decreasing size of patches without overall habitat loss). We measured these effects using assemblages of macro-invertebrates colonizing representative morphological groups of intertidal macroalgae (e.g. encrusting, turf and canopy-forming algae). For this purpose, we constructed artificial assemblages with different combinations of morphological groups and increasing levels of fragmentation by manipulating the amount of bare rock or the spatial arrangement of different species in mixed assemblages. In general, our results showed that 1) fragmentation did not significantly affect the assemblages of macroinvertebrates; 2) at greater levels of fragmentation, there were greater numbers of species in mixed algal assemblages, suggesting that higher habitat complexity promotes species colonization. Our results suggest that predicting the consequences of fragmentation in heterogeneous habitats is dependent on the type and diversity of morphological groups making up those habitats.

Macroalgal Composition Determines the Structure of Benthic Assemblages Colonizing Fragmented Habitats

PubMed Central

Matias, Miguel G.; Arenas, Francisco; Rubal, Marcos; Pinto, Isabel S.

2015-01-01

Understanding the consequences of fragmentation of coastal habitats is an important topic of discussion in marine ecology. Research on the effects of fragmentation has revealed complex and context-dependent biotic responses, which prevent generalizations across different habitats or study organisms. The effects of fragmentation in marine environments have been rarely investigated across heterogeneous habitats, since most studies have focused on a single type of habitat or patch. In this study, we assessed the effects of different levels of fragmentation (i.e. decreasing size of patches without overall habitat loss). We measured these effects using assemblages of macro-invertebrates colonizing representative morphological groups of intertidal macroalgae (e.g. encrusting, turf and canopy-forming algae). For this purpose, we constructed artificial assemblages with different combinations of morphological groups and increasing levels of fragmentation by manipulating the amount of bare rock or the spatial arrangement of different species in mixed assemblages. In general, our results showed that 1) fragmentation did not significantly affect the assemblages of macroinvertebrates; 2) at greater levels of fragmentation, there were greater numbers of species in mixed algal assemblages, suggesting that higher habitat complexity promotes species colonization. Our results suggest that predicting the consequences of fragmentation in heterogeneous habitats is dependent on the type and diversity of morphological groups making up those habitats. PMID:26554924

Fish communities across a spectrum of habitats in the western Beaufort Sea and Chukchi Sea

NASA Astrophysics Data System (ADS)

Logerwell, E.; Busby, M.; Carothers, C.; Cotton, S.; Duffy-Anderson, J.; Farley, E.; Goddard, P.; Heintz, R.; Holladay, B.; Horne, J.; Johnson, S.; Lauth, B.; Moulton, L.; Neff, D.; Norcross, B.; Parker-Stetter, S.; Seigle, J.; Sformo, T.

2015-08-01

The increased scientific interest in the Arctic due to climate change and potential oil and gas development has resulted in numerous surveys of Arctic marine fish communities since the mid-2000s. Surveys have been conducted in nearly all Arctic marine fish habitats: from lagoons, beaches and across the continental shelf and slope. This provides an opportunity only recently available to study Arctic fish communities across a spectrum of habitats. We examined fish survey data from lagoon, beach, nearshore benthic, shelf pelagic and shelf benthic habitats in the western Beaufort Sea and Chukchi Sea. Specifically, we compare and contrast relative fish abundance and length (a proxy for age) among habitats and seas. We also examined ichthyoplankton presence/absence and abundance of dominant taxa in the shelf habitat. Our synthesis revealed more similarities than differences between the two seas. For example, our results show that the nearshore habitat is utilized by forage fish across age classes, and is also a nursery area for other species. Our results also indicated that some species may be expanding their range to the north, for example, Chinook Salmon. In addition, we documented the presence of commercially important taxa such as Walleye Pollock and flatfishes (Pleuronectidae). Our synthesis of information on relative abundance and age allowed us to propose detailed conceptual models for the life history distribution of key gadids in Arctic food webs: Arctic and Saffron Cod. Finally, we identify research gaps, such as the need for surveys of the surface waters of the Beaufort Sea, surveys of the lagoons of the Chukchi Sea, and winter season surveys in all areas. We recommend field studies on fish life history that sample multiple age classes in multiple habitats throughout the year to confirm, resolve and interpret the patterns in fish habitat use that we observed.

Species diversity and drivers of arbuscular mycorrhizal fungal communities in a semi-arid mountain in China

PubMed Central

Zhang, Zhiming; Yang, Jiantao; Zhu, Yiwei

2017-01-01

Arbuscular mycorrhizal fungi (AMF) play an essential role in complex ecosystems. However, the species diversity and composition of AMF communities remain unclear in semi-arid mountains. Further, it is not well understood if the characteristics of AMF community assemblies differ for different habitat types, e.g., agricultural arable land, artificial forest land, natural grassland, and bush/wood land. Here, using the high-throughput technology by Illumina sequencing on the MiSeq platform, we explored the species diversity and composition of soil AMF communities among different habitat types in a semi-arid mountain (Taihang Mountain, Mid-western region of China). Then, we analyzed the effect of nutrient composition and soil texture on AMF community assembly. Our results showed that members of the Glomus genera were predominated in all soil types. The distance-based redundancy analysis indicated that the content of water, available phosphorus, and available potassium were the most crucial geochemical factors that significantly affected AMF communities (p < 0.05). The analysis of the soil texture confirmed that AMF diversity was negatively correlated with soil clay content. The comparison of AMF diversity among the various habitat types revealed that the artificial forest land had the lowest AMF diversity in comparison with other land types. Our findings suggest that there were differences in species diversity and composition of soil AMF communities among different habitat types. These findings shed new light on the characteristics of community structure and drivers of community assembly in AMF in semi-arid mountains, and point to the potential importance of different habitat types on AMF communities. PMID:29230378

Linking social, ecological, and physical science to advance natural and nature-based protection for coastal communities.

PubMed

Arkema, Katie K; Griffin, Robert; Maldonado, Sergio; Silver, Jessica; Suckale, Jenny; Guerry, Anne D

2017-07-01

Interest in the role that ecosystems play in reducing the impacts of coastal hazards has grown dramatically. Yet the magnitude and nature of their effects are highly context dependent, making it difficult to know under what conditions coastal habitats, such as saltmarshes, reefs, and forests, are likely to be effective for saving lives and protecting property. We operationalize the concept of natural and nature-based solutions for coastal protection by adopting an ecosystem services framework that propagates the outcome of a management action through ecosystems to societal benefits. We review the literature on the basis of the steps in this framework, considering not only the supply of coastal protection provided by ecosystems but also the demand for protective services from beneficiaries. We recommend further attention to (1) biophysical processes beyond wave attenuation, (2) the combined effects of multiple habitat types (e.g., reefs, vegetation), (3) marginal values and expected damage functions, and, in particular, (4) community dependence on ecosystems for coastal protection and co-benefits. We apply our approach to two case studies to illustrate how estimates of multiple benefits and losses can inform restoration and development decisions. Finally, we discuss frontiers for linking social, ecological, and physical science to advance natural and nature-based solutions to coastal protection. © 2017 New York Academy of Sciences.

Space Station Biological Research Project (SSBRP) Cell Culture Unit (CCU) and incubator for International Space Station (ISS) cell culture experiments

NASA Technical Reports Server (NTRS)

Vandendriesche, Donald; Parrish, Joseph; Kirven-Brooks, Melissa; Fahlen, Thomas; Larenas, Patricia; Havens, Cindy; Nakamura, Gail; Sun, Liping; Krebs, Chris; de Luis, Javier;

Central-place foraging and ecological effects of an invasive predator across multiple habitats.

PubMed

Benkwitt, Cassandra E

2016-10-01

Cross-habitat foraging movements of predators can have widespread implications for predator and prey populations, community structure, nutrient transfer, and ecosystem function. Although central-place foraging models and other aspects of optimal foraging theory focus on individual predator behavior, they also provide useful frameworks for understanding the effects of predators on prey populations across multiple habitats. However, few studies have examined both the foraging behavior and ecological effects of nonnative predators across multiple habitats, and none has tested whether nonnative predators deplete prey in a manner predicted by these foraging models. I conducted behavioral observations of invasive lionfish (Pterois volitans) to determine whether they exhibit foraging movements similar to other central-place consumers. Then, I used a manipulative field experiment to test whether their effects on prey populations are consistent with three qualitative predictions from optimal foraging models. Specifically, I predicted that the effects of invasive lionfish on native prey will (1) occur at central sites first and then in surrounding habitats, (2) decrease with increasing distance away from their shelter site, and (3) extend to greater distances when prey patches are spaced closer together. Approximately 40% of lionfish exhibited short-term crepuscular foraging movements into surrounding habitats from the coral patch reefs where they shelter during daylight hours. Over the course of 7 weeks, lionfish depleted native fish populations on the coral patch reefs where they reside, and subsequently on small structures in the surrounding habitat. However, their effects did not decrease with increasing distance from the central shelter site and the influence of patch spacing was opposite the prediction. Instead, lionfish always had the greatest effects in areas with the highest prey densities. The differences between the predicted and observed effects of lionfish foraging are likely due to different constraints faced by invasive predators compared to native predators, namely that lionfish do not face increased predation risk with increased movement away from shelter sites. By foraging at greater distances from patch reefs than native predators, lionfish eliminated a spatial refuge from predation used by juveniles of many commercially and ecologically important reef fishes. © 2016 by the Ecological Society of America.

Sex- and habitat-specific movement of an omnivorous semi-terrestrial crab controls habitat connectivity and subsidies: a multi-parameter approach.

PubMed

Hübner, Lena; Pennings, Steven C; Zimmer, Martin

2015-08-01

Distinct habitats are often linked through fluxes of matter and migration of organisms. In particular, intertidal ecotones are prone to being influenced from both the marine and the terrestrial realms, but whether or not small-scale migration for feeding, sheltering or reproducing is detectable may depend on the parameter studied. Within the ecotone of an upper saltmarsh in the United States, we investigated the sex-specific movement of the semi-terrestrial crab Armases cinereum using an approach of determining multiple measures of across-ecotone migration. To this end, we determined food preference, digestive abilities (enzyme activities), bacterial hindgut communities (genetic fingerprint), and the trophic position of Armases and potential food sources (stable isotopes) of males versus females of different sub-habitats, namely high saltmarsh and coastal forest. Daily observations showed that Armases moved frequently between high-intertidal (saltmarsh) and terrestrial (forest) habitats. Males were encountered more often in the forest habitat, whilst gravid females tended to be more abundant in the marsh habitat but moved more frequently. Food preference was driven by both sex and habitat. The needlerush Juncus was preferred over three other high-marsh detrital food sources, and the periwinkle Littoraria was the preferred prey of male (but not female) crabs from the forest habitats; both male and female crabs from marsh habitat preferred the fiddler crab Uca over three other prey items. In the field, the major food sources were clearly vegetal, but males have a higher trophic position than females. In contrast to food preference, isotope data excluded Uca and Littoraria as major food sources, except for males from the forest, and suggested that Armases consumes a mix of C4 and C3 plants along with animal prey. Digestive enzyme activities differed significantly between sexes and habitats and were higher in females and in marsh crabs. The bacterial hindgut community differed significantly between sexes, but habitat effects were greater than sex effects. By combining multiple measures of feeding ecology, we demonstrate that Armases exhibits sex-specific habitat choice and food preference. By using both coastal forest and saltmarsh habitats, but feeding predominantly in the latter, they possibly act as a key biotic vector of spatial subsidies across habitat borders. The degree of contributing to fluxes of matter, nutrients and energy, however, depends on their sex, indicating that changes in population structure would likely have profound effects on ecosystem connectivity and functioning.

Active season microhabitat and vegetation selection by giant gartersnakes associated with a restored marsh in California

USGS Publications Warehouse

Halstead, Brian J.; Valcarcel, Patricia; Wylie, Glenn D.; Coates, Peter S.; Casazza, Michael L.; Rosenberg, Daniel K.

2016-01-01

Studies of habitat selection can reveal important patterns to guide habitat restoration and management for species of conservation concern. Giant gartersnakes Thamnophis gigas are endemic to the Central Valley of California, where >90% of their historical wetland habitat has been converted to agricultural and other uses. Information about the selection of habitats by individual giant gartersnakes would guide habitat restoration by indicating which habitat features and vegetation types are likely to be selected by these rare snakes. We examined activity patterns and selection of microhabitats and vegetation types by adult female giant gartersnakes with radiotelemetry at a site composed of rice agriculture and restored wetlands using a paired case-control study design. Adult female giant gartersnakes were 14.7 (95% credible interval [CRI] = 9.4–23.7) times more likely to be active (foraging, mating, or moving) when located in aquatic habitats than when located in terrestrial habitats. Microhabitats associated with cover—particularly emergent vegetation, terrestrial vegetation, and litter—were positively selected by giant gartersnakes. Individual giant gartersnakes varied greatly in their selection of rice and rock habitats, but varied little in their selection of open water. Tules Schoenoplectus acutus were the most strongly selected vegetation type, and duckweed Lemna spp., water-primrose Ludwigia spp., forbs, and grasses also were positively selected at the levels of availability observed at our study site. Management practices that promote the interface of water with emergent aquatic and herbaceous terrestrial vegetation will likely benefit giant gartersnakes. Given their strong selection of tules, restoration of native tule marshes will likely provide the greatest benefit to these threatened aquatic snakes.

Flat and complex temperate reefs provide similar support for fish: Evidence for a unimodal species-habitat relationship.

PubMed

Paxton, Avery B; Pickering, Emily A; Adler, Alyssa M; Taylor, J Christopher; Peterson, Charles H

2017-01-01

Structural complexity, a form of habitat heterogeneity, influences the structure and function of ecological communities, generally supporting increased species density, richness, and diversity. Recent research, however, suggests the most complex habitats may not harbor the highest density of individuals and number of species, especially in areas with elevated human influence. Understanding nuances in relationships between habitat heterogeneity and ecological communities is warranted to guide habitat-focused conservation and management efforts. We conducted fish and structural habitat surveys of thirty warm-temperate reefs on the southeastern US continental shelf to quantify how structural complexity influences fish communities. We found that intermediate complexity maximizes fish abundance on natural and artificial reefs, as well as species richness on natural reefs, challenging the current paradigm that abundance and other fish community metrics increase with increasing complexity. Naturally occurring rocky reefs of flat and complex morphologies supported equivalent abundance, biomass, species richness, and community composition of fishes. For flat and complex morphologies of rocky reefs to receive equal consideration as essential fish habitat (EFH), special attention should be given to detecting pavement type rocky reefs because their ephemeral nature makes them difficult to detect with typical seafloor mapping methods. Artificial reefs of intermediate complexity also maximized fish abundance, but human-made structures composed of low-lying concrete and metal ships differed in community types, with less complex, concrete structures supporting lower numbers of fishes classified largely as demersal species and metal ships protruding into the water column harboring higher numbers of fishes, including more pelagic species. Results of this study are essential to the process of evaluating habitat function provided by different types and shapes of reefs on the seafloor so that all EFH across a wide range of habitat complexity may be accurately identified and properly managed.

Balancing habitat delivery for breeding marsh birds and nonbreeding waterfowl: An integrated waterbird management and monitoring approach at Clarence Cannon National Wildlife Refuge, Missouri

USGS Publications Warehouse

Loges, Brian W.; Lyons, James E.; Tavernia, Brian G.

2017-08-23

The Clarence Cannon National Wildlife Refuge (CCNWR) in the Mississippi River flood plain of eastern Missouri provides high quality emergent marsh and moist-soil habitat benefitting both nesting marsh birds and migrating waterfowl. Staff of CCNWR manipulate water levels and vegetation in the 17 units of the CCNWR to provide conditions favorable to these two important guilds. Although both guilds include focal species at multiple planning levels and complement objectives to provide a diversity of wetland community types and water regimes, additional decision support is needed for choosing how much emergent marsh and moist-soil habitat should be provided through annual management actions.To develop decision guidance for balanced delivery of high-energy waterfowl habitat and breeding marsh bird habitat, two measureable management objectives were identified: nonbreeding Anas Linnaeus (dabbling duck) use-days and Rallus elegans (king rail) occupancy of managed units. Three different composite management actions were identified to achieve these objectives. Each composite management action is a unique combination of growing season water regime and soil disturbance. The three composite management actions are intense moist-soil management (moist-soil), intermediate moist-soil (intermediate), and perennial management, which idles soils disturbance (perennial). The two management objectives and three management options were used in a multi-criteria decision analysis to indicate resource allocations and inform annual decision making. Outcomes of the composite management actions were predicted in two ways and multi-criteria decision analysis was used with each set of predictions. First, outcomes were predicted using expert-elicitation techniques and a panel of subject matter experts. Second, empirical data from the Integrated Waterbird Management and Monitoring Initiative collected between 2010 and 2013 were used; where data were lacking, expert judgment was used. Also, a Bayesian decision model was developed that can be updated with monitoring data in an adaptive management framework.Optimal resource allocations were identified in the form of portfolios of composite management actions for the 17 units in the framework. A constrained optimization (linear programming) was used to maximize an objective function that was based on the sum of dabbling duck and king rail utility. The constraints, which included management costs and a minimum energetic carrying capacity (total moist-soil acres), were applied to balance habitat delivery for dabbling ducks and king rails. Also, the framework was constrained in some cases to apply certain management actions of interest to certain management units; these constraints allowed for a variety of hypothetical Habitat Management Plans, including one based on output from a hydrogeomorphic study of the refuge. The decision analysis thus created numerous refuge-wide scenarios, each representing a unique mix of options (one for each of 17 units) and associated benefits (i.e., outcomes with respect to two management objectives).Prepared in collaboration with the U.S. Fish and Wildlife Service, the decision framework presented here is designed as a decision-aiding tool for CCNWR managers who ultimately make difficult decisions each year with multiple objectives, multiple management units, and the complexity of natural systems. The framework also provides a way to document hypotheses about how the managed system functions. Furthermore, the framework identifies specific monitoring needs and illustrates precisely how monitoring data will be used for decision-aiding and adaptive management.

GIS habitat analysis for lesser prairie-chickens in southeastern New Mexico.

PubMed

Johnson, Kristine; Neville, Teri B; Neville, Paul

2006-12-04

We conducted Geographic Information System (GIS) habitat analyses for lesser prairie-chicken (LPCH, Tympanuchus pallidicinctus) conservation planning. The 876,799 ha study area included most of the occupied habitat for the LPCH in New Mexico. The objectives were to identify and quantify: 1. suitable LPCH habitat in New Mexico, 2. conversion of native habitats, 3. potential for habitat restoration, and 4. unsuitable habitat available for oil and gas activities. We found 16% of suitable habitat (6% of the study area) distributed in 13 patches of at least 3,200 ha and 11% of suitable habitat (4% of the study area) distributed in four patches over 7,238 ha. The area converted from native vegetation types comprised 17% of the study area. Ninety-five percent of agricultural conversion occurred on private lands in the northeastern corner of the study area. Most known herbicide-related conversions (82%) occurred in rangelands in the western part of the study area, on lands managed primarily by the US Bureau of Land Management (BLM). We identified 88,190 ha (10% of the study area) of habitats with reasonable restoration potential. Sixty-two percent of the primary population area (PPA) contained occupied, suitable, or potentially suitable habitat, leaving 38% that could be considered for oil and gas development. Although suitable LPCH habitat appears at first glance to be abundant in southeastern New Mexico, only a fraction of apparently suitable vegetation types constitute quality habitat. However, we identified habitat patches that could be restored through mesquite control or shin-oak reintroduction. The analysis also identified areas of unsuitable habitat with low restoration potential that could be targeted for oil and gas exploration, in lieu of occupied, high-quality habitats. Used in combination with GIS analysis and current LPCH population data, the habitat map represents a powerful conservation and management tool.

GIS habitat analysis for lesser prairie-chickens in southeastern New Mexico

PubMed Central

Johnson, Kristine; Neville, Teri B; Neville, Paul

2006-01-01

Background We conducted Geographic Information System (GIS) habitat analyses for lesser prairie-chicken (LPCH, Tympanuchus pallidicinctus) conservation planning. The 876,799 ha study area included most of the occupied habitat for the LPCH in New Mexico. The objectives were to identify and quantify: 1. suitable LPCH habitat in New Mexico, 2. conversion of native habitats, 3. potential for habitat restoration, and 4. unsuitable habitat available for oil and gas activities. Results We found 16% of suitable habitat (6% of the study area) distributed in 13 patches of at least 3,200 ha and 11% of suitable habitat (4% of the study area) distributed in four patches over 7,238 ha. The area converted from native vegetation types comprised 17% of the study area. Ninety-five percent of agricultural conversion occurred on private lands in the northeastern corner of the study area. Most known herbicide-related conversions (82%) occurred in rangelands in the western part of the study area, on lands managed primarily by the US Bureau of Land Management (BLM). We identified 88,190 ha (10% of the study area) of habitats with reasonable restoration potential. Sixty-two percent of the primary population area (PPA) contained occupied, suitable, or potentially suitable habitat, leaving 38% that could be considered for oil and gas development. Conclusion Although suitable LPCH habitat appears at first glance to be abundant in southeastern New Mexico, only a fraction of apparently suitable vegetation types constitute quality habitat. However, we identified habitat patches that could be restored through mesquite control or shin-oak reintroduction. The analysis also identified areas of unsuitable habitat with low restoration potential that could be targeted for oil and gas exploration, in lieu of occupied, high-quality habitats. Used in combination with GIS analysis and current LPCH population data, the habitat map represents a powerful conservation and management tool. PMID:17144922

Selection of nest-site habitat by interior least terns in relation to sandbar construction

USGS Publications Warehouse

Sherfy, M.H.; Stucker, J.H.; Buhl, D.A.

2012-01-01

Federally endangered interior least terns (Sternula antillarum) nest on bare or sparsely vegetated sandbars on midcontinent river systems. Loss of nesting habitat has been implicated as a cause of population declines, and managing these habitats is a major initiative in population recovery. One such initiative involves construction of mid-channel sandbars on the Missouri River, where natural sandbar habitat has declined in quantity and quality since the late 1990s. We evaluated nest-site habitat selection by least terns on constructed and natural sandbars by comparing vegetation, substrate, and debris variables at nest sites (na =a 798) and random points (na =a 1,113) in bare or sparsely vegetated habitats. Our logistic regression models revealed that a broader suite of habitat features was important in nest-site selection on constructed than on natural sandbars. Odds ratios for habitat variables indicated that avoidance of habitat features was the dominant nest-site selection process on both sandbar types, with nesting terns being attracted to nest-site habitat features (gravel and debris) and avoiding vegetation only on constructed sandbars, and avoiding silt and leaf litter on both sandbar types. Despite the seemingly uniform nature of these habitats, our results suggest that a complex suite of habitat features influences nest-site choice by least terns. However, nest-site selection in this social, colonially nesting species may be influenced by other factors, including spatial arrangement of bare sand habitat, proximity to other least terns, and prior habitat occupancy by piping plovers (Charadrius melodus). We found that nest-site selection was sensitive to subtle variation in habitat features, suggesting that rigor in maintaining habitat condition will be necessary in managing sandbars for the benefit of least terns. Further, management strategies that reduce habitat features that are avoided by least terns may be the most beneficial to nesting least terns. ?? 2011 The Wildlife Society.

Selection of nest-site habitat by interior least terns in relation to sandbar construction

USGS Publications Warehouse

Sherfy, Mark H.; Stucker, Jennifer H.; Buhl, Deborah A.

2012-01-01

Federally endangered interior least terns (Sternula antillarum) nest on bare or sparsely vegetated sandbars on midcontinent river systems. Loss of nesting habitat has been implicated as a cause of population declines, and managing these habitats is a major initiative in population recovery. One such initiative involves construction of mid-channel sandbars on the Missouri River, where natural sandbar habitat has declined in quantity and quality since the late 1990s. We evaluated nest-site habitat selection by least terns on constructed and natural sandbars by comparing vegetation, substrate, and debris variables at nest sites (n = 798) and random points (n = 1,113) in bare or sparsely vegetated habitats. Our logistic regression models revealed that a broader suite of habitat features was important in nest-site selection on constructed than on natural sandbars. Odds ratios for habitat variables indicated that avoidance of habitat features was the dominant nest-site selection process on both sandbar types, with nesting terns being attracted to nest-site habitat features (gravel and debris) and avoiding vegetation only on constructed sandbars, and avoiding silt and leaf litter on both sandbar types. Despite the seemingly uniform nature of these habitats, our results suggest that a complex suite of habitat features influences nest-site choice by least terns. However, nest-site selection in this social, colonially nesting species may be influenced by other factors, including spatial arrangement of bare sand habitat, proximity to other least terns, and prior habitat occupancy by piping plovers (Charadrius melodus). We found that nest-site selection was sensitive to subtle variation in habitat features, suggesting that rigor in maintaining habitat condition will be necessary in managing sandbars for the benefit of least terns. Further, management strategies that reduce habitat features that are avoided by least terns may be the most beneficial to nesting least terns.

Identifying keystone habitats with a mosaic approach can improve biodiversity conservation in disturbed ecosystems.

PubMed

Hitchman, Sean M; Mather, Martha E; Smith, Joseph M; Fencl, Jane S

2018-01-01

Conserving native biodiversity in the face of human- and climate-related impacts is a challenging and globally important ecological problem that requires an understanding of spatially connected, organismal-habitat relationships. Globally, a suite of disturbances (e.g., agriculture, urbanization, climate change) degrades habitats and threatens biodiversity. A mosaic approach (in which connected, interacting collections of juxtaposed habitat patches are examined) provides a scientific foundation for addressing many disturbance-related, ecologically based conservation problems. For example, if specific habitat types disproportionately increase biodiversity, these keystones should be incorporated into research and management plans. Our sampling of fish biodiversity and aquatic habitat along ten 3-km sites within the Upper Neosho River subdrainage, KS, from June-August 2013 yielded three generalizable ecological insights. First, specific types of mesohabitat patches (i.e., pool, riffle, run, and glide) were physically distinct and created unique mosaics of mesohabitats that varied across sites. Second, species richness was higher in riffle mesohabitats when mesohabitat size reflected field availability. Furthermore, habitat mosaics that included more riffles had greater habitat diversity and more fish species. Thus, riffles (<5% of sampled area) acted as keystone habitats. Third, additional conceptual development, which we initiate here, can broaden the identification of keystone habitats across ecosystems and further operationalize this concept for research and conservation. Thus, adopting a mosaic approach can increase scientific understanding of organismal-habitat relationships, maintain natural biodiversity, advance spatial ecology, and facilitate effective conservation of native biodiversity in human-altered ecosystems. © 2017 John Wiley & Sons Ltd.

Habitat typing versus advanced vegetation classification in western forests

Treesearch

Tony Kusbach; John Shaw; James Long; Helga Van Miegroet

2012-01-01

Major habitat and community types in northern Utah were compared with plant alliances and associations that were derived from fidelity- and diagnostic-species classification concepts. Each of these classification approaches was associated with important environmental factors. Within a 20,000-ha watershed, 103 forest ecosystems were described by physiographic features,...

Using the Science Process Skills to Investigate Animals and Animal Habitats

NASA Astrophysics Data System (ADS)

Braithwaite, Saisha

This study explored how a STEM (science, technology, engineering, and math) engineer design challenge allowed students to analyze the characteristics of animals and animal habitats. This study was conducted in a kindergarten class within an urban school district. The class has 25 students while the study focuses on six students. The group consists of three boys and three girls. In this study, the students used the science process skills to observe, classify, infer, and make predictions about animals and habitats. In the engineer design, students created an established habitat and built their own animal that can survive in that habitat. The study analyzed how students used process skills to engage with the habitats and animals. The students successfully used the science process skills in this study. The results showed that students gained more content knowledge when they used multiple process skills within a lesson. The study shows that developing lessons using the science process skills improves students' ability to demonstrate their knowledge of animals and their habitats.

Three-dimensional habitat structure and landscape genetics: a step forward in estimating functional connectivity.

PubMed

Milanesi, P; Holderegger, R; Bollmann, K; Gugerli, F; Zellweger, F

2017-02-01

Estimating connectivity among fragmented habitat patches is crucial for evaluating the functionality of ecological networks. However, current estimates of landscape resistance to animal movement and dispersal lack landscape-level data on local habitat structure. Here, we used a landscape genetics approach to show that high-fidelity habitat structure maps derived from Light Detection and Ranging (LiDAR) data critically improve functional connectivity estimates compared to conventional land cover data. We related pairwise genetic distances of 128 Capercaillie (Tetrao urogallus) genotypes to least-cost path distances at multiple scales derived from land cover data. Resulting β values of linear mixed effects models ranged from 0.372 to 0.495, while those derived from LiDAR ranged from 0.558 to 0.758. The identification and conservation of functional ecological networks suffering from habitat fragmentation and homogenization will thus benefit from the growing availability of detailed and contiguous data on three-dimensional habitat structure and associated habitat quality. © 2016 by the Ecological Society of America.

Benthic assemblages, biodiversity and invasiveness in marinas and commercial harbours: an investigation using a bioindicator group.

PubMed

Megina, Cesar; González-Duarte, Manuel M; López-González, Pablo J

2016-01-01

Fouling communities on artificial marine structures are generally different from benthic communities in natural rocky habitats. However, they may also differ among different types of artificial structures. Two artificial structures in direct contact with arriving vessels were compared: floating pontoons within recreational marinas, and sea-walls within commercial harbours. Natural rocky habitats were used as a reference, and the genus Eudendrium (Cnidaria, Hydrozoa) was chosen as a bioindicator. The assemblages were different among the three types of habitat studied, with different species characterising each habitat. The probability of finding an invasive Eudendrium species was significantly higher on pontoons. Diversity was the lowest on pontoons, but it was not significantly different between sea-walls and natural rocks. In general, a barrier to the spread of exotic species exists between harbours and natural rocky habitats. Floating pontoons seem to be a less suitable habitat for native fauna and a key element in marine biological invasions.

Natural and sexual selection against immigrants maintains differentiation among micro-allopatric populations.

PubMed

Tobler, M; Riesch, R; Tobler, C M; Schulz-Mirbach, T; Plath, M

2009-11-01

Local adaptation to divergent environmental conditions can promote population genetic differentiation even in the absence of geographic barriers and hence lead to speciation. But what mechanisms contribute to reproductive isolation among diverging populations? We tested for natural and sexual selection against immigrants in a fish species inhabiting (and adapting to) nonsulphidic surface habitats, sulphidic surface habitats and a sulphidic cave. Gene flow is strong among sample sites situated within the same habitat type, but low among divergent habitat types. Our results indicate that females of both sulphidic populations discriminate against immigrant males during mate choice. Furthermore, using reciprocal translocation experiments, we document natural selection against migrants between nonsulphidic and sulphidic habitats, whereas migrants between sulphidic cave and surface habitats did not exhibit increased mortality within the same time period. Consequently, both natural and sexual selection may contribute to isolation among parapatric populations, and selection against immigrants may be a powerful mechanism facilitating speciation among locally adapted populations even over very small spatial distances.

Wildlife habitat associations in eastern hemlock - birds, smaller mammals, and forest carnivores

Treesearch

Mariko Yamasaki; Richard M. DeGraaf; John W. Lanier

2000-01-01

Ninety-six bird and forty-seven mammal species are associated with the hemlock type in the northeastern United States. Of these species eight bird and ten mammal species are strongly associated with the hemlock type though none of these species are limited to it. Hemlock species richness appears to be lower than in other conifer or hardwood types. Avian habitat...

Spatial heterogeneity and scale-dependent habitat selection for two sympatric raptors in mixed-grass prairie.

PubMed

Atuo, Fidelis Akunke; O'Connell, Timothy John

2017-08-01

Sympatric predators are predicted to partition resources, especially under conditions of food limitation. Spatial heterogeneity that influences prey availability might play an important role in the scales at which potential competitors select habitat. We assessed potential mechanisms for coexistence by examining the role of heterogeneity in resource partitioning between sympatric raptors overwintering in the southern Great Plains. We conducted surveys for wintering Red-tailed hawk ( Buteo jamaicensis ) and Northern Harrier ( Circus cyanea ) at two state wildlife management areas in Oklahoma, USA. We used information from repeated distance sampling to project use locations in a GIS. We applied resource selection functions to model habitat selection at three scales and analyzed for niche partitioning using the outlying mean index. Habitat selection of the two predators was mediated by spatial heterogeneity. The two predators demonstrated significant fine-scale discrimination in habitat selection in homogeneous landscapes, but were more sympatric in heterogeneous landscapes. Red-tailed hawk used a variety of cover types in heterogeneous landscapes but specialized on riparian forest in homogeneous landscapes. Northern Harrier specialized on upland grasslands in homogeneous landscapes but selected more cover types in heterogeneous landscapes. Our study supports the growing body of evidence that landscapes can affect animal behaviors. In the system we studied, larger patches of primary land cover types were associated with greater allopatry in habitat selection between two potentially competing predators. Heterogeneity within the scale of raptor home ranges was associated with greater sympatry in use and less specialization in land cover types selected.

Biodiversity enhances ecosystem multifunctionality across trophic levels and habitats

PubMed Central

Lefcheck, Jonathan S.; Byrnes, Jarrett E. K.; Isbell, Forest; Gamfeldt, Lars; Griffin, John N.; Eisenhauer, Nico; Hensel, Marc J. S.; Hector, Andy; Cardinale, Bradley J.; Duffy, J. Emmett

2015-01-01

The importance of biodiversity for the integrated functioning of ecosystems remains unclear because most evidence comes from analyses of biodiversity's effect on individual functions. Here we show that the effects of biodiversity on ecosystem function become more important as more functions are considered. We present the first systematic investigation of biodiversity's effect on ecosystem multifunctionality across multiple taxa, trophic levels and habitats using a comprehensive database of 94 manipulations of species richness. We show that species-rich communities maintained multiple functions at higher levels than depauperate ones. These effects were stronger for herbivore biodiversity than for plant biodiversity, and were remarkably consistent across aquatic and terrestrial habitats. Despite observed tradeoffs, the overall effect of biodiversity on multifunctionality grew stronger as more functions were considered. These results indicate that prior research has underestimated the importance of biodiversity for ecosystem functioning by focusing on individual functions and taxonomic groups. PMID:25907115

Biodiversity enhances ecosystem multifunctionality across trophic levels and habitats.

PubMed

Lefcheck, Jonathan S; Byrnes, Jarrett E K; Isbell, Forest; Gamfeldt, Lars; Griffin, John N; Eisenhauer, Nico; Hensel, Marc J S; Hector, Andy; Cardinale, Bradley J; Duffy, J Emmett

2015-04-24

The importance of biodiversity for the integrated functioning of ecosystems remains unclear because most evidence comes from analyses of biodiversity's effect on individual functions. Here we show that the effects of biodiversity on ecosystem function become more important as more functions are considered. We present the first systematic investigation of biodiversity's effect on ecosystem multifunctionality across multiple taxa, trophic levels and habitats using a comprehensive database of 94 manipulations of species richness. We show that species-rich communities maintained multiple functions at higher levels than depauperate ones. These effects were stronger for herbivore biodiversity than for plant biodiversity, and were remarkably consistent across aquatic and terrestrial habitats. Despite observed tradeoffs, the overall effect of biodiversity on multifunctionality grew stronger as more functions were considered. These results indicate that prior research has underestimated the importance of biodiversity for ecosystem functioning by focusing on individual functions and taxonomic groups.

Habitat type and dispersal mode underlie the capacity for plant migration across an intermittent seaway.

PubMed

Worth, J R P; Holland, B R; Beeton, N J; Schönfeld, B; Rossetto, M; Vaillancourt, R E; Jordan, G J

2017-10-17

Investigating species distributions across geographic barriers is a commonly utilized method in biogeography to help understand the functional traits that allow plants to disperse successfully. Here the biogeographic pattern analysis approach is extended by using chloroplast DNA whole-genome 'mining' to examine the functional traits that have impacted the dispersal of widespread temperate forest species across an intermittent seaway, the 200 km wide Bass Strait of south-eastern Australia. Multiple, co-distributed species of both dry and wet forests were sampled from five regions on either side of the Strait to obtain insights into past dispersal of these biomes via seed. Using a next-generation sequencing-based pool-seq method, the sharing of single nucleotide polymorphisms (SNPs) was estimated between all five regions in the chloroplast genome. A total of 3335 SNPs were detected in 20 species. SNP sharing patterns between regions provided evidence for significant seed-mediated gene flow across the study area, including across Bass Strait. A higher proportion of shared SNPs in dry forest species, especially those dispersed by birds, compared with wet forest species suggests that dry forest species have undergone greater seed-mediated gene flow across the study region during past climatic oscillations and sea level changes associated with the interglacial/glacial cycles. This finding is consistent with a greater propensity for long-distance dispersal for species of open habitats and proxy evidence that expansive areas of dry vegetation occurred during times of exposure of Bass Strait during glacials. Overall, this study provides novel genetic evidence that habitat type and its interaction with dispersal traits are major influences on dispersal of plants. © The Author 2017. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com

Conservation of the Patchily Distributed and Declining Purple-Crowned Fairy-Wren (Malurus coronatus coronatus) across a Vast Landscape: The Need for a Collaborative Landscape-Scale Approach

PubMed Central

Skroblin, Anja; Legge, Sarah

2013-01-01

Conservation of species that are patchily distributed must consider processes that influence both the occurrence of individuals within patches, and the persistence of populations across multiple habitat patches within the landscape. Here we present a rare regional assessment of the population size and distribution of a patchily distributed, threatened species, the purple-crowned fairy-wren (Malurus coronatus coronatus), across a vast landscape. We used data from aerial vegetation mapping of waterways, with on-ground bird surveys to predict the occurrence of suitable habitat for M. c. coronatus across 14 catchments in the Kimberley region of Western Australia. Suitable habitat was extremely limited (305 km of riparian vegetation) and fragmented (342 patches) along the 2700 km of waterway surveyed within catchments where the species occurs. Populations were predicted to be large on the Fitzroy, Durack and Drysdale catchments, and small on the Isdell and northern Pentecost catchments, and a total population of 2834 to 4878 individuals could be supported. The sub-populations spanned numerous patches of habitat across multiple properties of varying tenure. Therefore, a landscape-scale approach to conservation management, across multiple tenures, is critical to safe-guard connectivity within populations. The greatest benefit may be achieved by a combination of broad-scale actions to reduce the impact of ubiquitous threatening processes, and fine-scale targeted effort in areas where populations are most vulnerable. Controlling access of stock to waterways and management of fire are most important to conserve suitable habitat. Such a landscape-scale approach to conservation may be of benefit to other patchily distributed species. PMID:23734229

A multiscale assessment of tree avoidance by prairie birds

USGS Publications Warehouse

Thompson, Sarah J.; Arnold, Todd W.; Amundson, Courtney L.

2014-01-01

In North America, grassland bird abundances have declined, likely as a result of loss and degradation of prairie habitat. Given the expense and limited opportunity to procure new grasslands, managers are increasingly focusing on ways to improve existing habitat for grassland birds, using techniques such as tree removal. To examine the potential for tree removal to benefit grassland birds, we conducted 446 point counts on 35 grassland habitat patches in the highly fragmented landscape of west-central Minnesota during 2009–2011. We modeled density of four grassland bird species in relation to habitat composition at multiple scales, focusing on covariates that described grass, woody vegetation (trees and large shrubs), or combinations of grass and woody vegetation. The best-supported models for all four grassland bird species incorporated variables measured at multiple scales, including local features such as grass height, litter depth, and local tree abundance, as well as landscape-level measures of grass and tree cover. Savannah Sparrows (Passerculus sandwichensis), Sedge Wrens (Cistothorus platensis), and Bobolinks (Dolichonyx oryzivorus) responded consistently and negatively to woody vegetation, but response to litter depth, grass height, and grassland extent were mixed among species. Our results suggest that reducing shrub and tree cover is more likely to increase the density of grassland birds than are attempts to improve grass quality or quantity. In particular, tree removal is more likely to increase density of Savannah Sparrows and Sedge Wrens than any reasonable changes in grass quality or quantity. Yet tree removal may not result in increased abundance of grassland birds if habitat composition is not considered at multiple scales. Managers will need to either manage at large scales (80–300 ha) or focus their efforts on removing trees in landscapes that contain some grasslands but few nearby wooded areas.

Benthic invertebrates of fixed sites in the western Lake Michigan drainages, Wisconsin and Michigan, 1993-95

USGS Publications Warehouse

Lenz, Bernard N.; Rheaume, S.J.

2000-01-01

This report describes the variability in family-level benthic-invertebrate population data and the reliability of the data as a water-quality indicator for 11 fixed surface-water sites in the Western Lake Michigan Drainages study area of the National Water-Quality Assessment Program. Benthic-invertebrate-community measures were computed for the following: number of individuals, Hilsenhoff’s Family-Level Biotic Index, number and percent EPT (Ephemeroptera, Plecoptera, and Tricoptera), Margalef’s Diversity Index, and mean tolerance value. Relations between these measures and environmental setting, habitat, and of chemical water quality are examined. Benthic-invertebrate communities varied greatly among fixed sites and within individual streams among multiple-reach and multiple-year sampling. The variations between multiple reaches and years were sometimes larger than those found between different fixed sites. Factors affecting benthic invertebrates included both habitat and chemical quality. Generally, fixed-site streams with the highest diversity, greatest number of benthic invertebrates, and those at which community measures indicated the best water quality also had the best habitat and chemical quality. Variations among reaches are most likely related to differences in habitat. Variations among years are most likely related to climatic changes, which create variations in flow and/or chemical quality. The variability in the data analyzed in this study shows how benthic invertebrates are affected by differences in both habitat and water quality, making them useful indicators of stream health; however, a single benthic-invertebrate sample alone cannot be relied upon to accurately describe water quality of the streams in this study. Benthic-invertebrate data contributed valuable information on the biological health of the 11 fixed sites when used as one of several data sources for assessing water quality.

Importance of agricultural landscapes to nesting burrowing owls in the Northern Great Plains, USA

USGS Publications Warehouse

Restani, M.; Davies, J.M.; Newton, W.E.

2008-01-01

Anthropogenic habitat loss and fragmentation are the principle factors causing declines of grassland birds. Declines in burrowing owl (Athene cunicularia) populations have been extensive and have been linked to habitat loss, primarily the decline of black-tailed prairie dog (Cynomys ludovicianus) colonies. Development of habitat use models is a research priority and will aid conservation of owls inhabiting human-altered landscapes. From 2001 to 2004 we located 160 burrowing owl nests on prairie dog colonies on the Little Missouri National Grassland in North Dakota. We used multiple linear regression and Akaike's Information Criterion to estimate the relationship between cover type characteristics surrounding prairie dog colonies and (1) number of owl pairs per colony and (2) reproductive success. Models were developed for two spatial scales, within 600 m and 2,000 m radii of nests for cropland, crested wheatgrass (Agropyron cristatum), grassland, and prairie dog colonies. We also included number of patches as a metric of landscape fragmentation. Annually, fewer than 30% of prairie dog colonies were occupied by owls. None of the models at the 600 m scale explained variation in number of owl pairs or reproductive success. However, models at the 2,000 m scale did explain number of owl pairs and reproductive success. Models included cropland, crested wheatgrass, and prairie dog colonies. Grasslands were not included in any of the models and had low importance values, although percentage grassland surrounding colonies was high. Management that protects prairie dog colonies bordering cropland and crested wheatgrass should be implemented to maintain nesting habitat of burrowing owls. ?? 2008 Springer Science+Business Media B.V.

The contribution of edaphic heterogeneity to the evolution and diversity of Burseraceae trees in the western Amazon.

PubMed

Fine, Paul V A; Daly, Douglas C; Villa Muñoz, Gorky; Mesones, Italo; Cameron, Kenneth M

2005-07-01

Environmental heterogeneity in the tropics is thought to lead to specialization in plants and thereby contribute to the diversity of the tropical flora. We examine this idea with data on the habitat specificity of 35 western Amazonian species from the genera Protium, Crepidospermum, and Tetragastris in the monophyletic tribe Protieae (Burseraceae) mapped on a molecular-based phylogeny. We surveyed three edaphic habitats that occur throughout terra firme Amazonia: white-sand, clay, and terrace soils in eight forests across more than 2000 km in the western Amazon. Twenty-six of the 35 species were found to be associated with only one of three soil types, and no species was associated with all three habitats; this pattern of edaphic specialization was consistent across the entire region. Habitat association mapped onto the phylogenetic tree shows association with terrace soils to be the probable ancestral state in the group, with subsequent speciation events onto clay and white-sand soils. The repeated gain of clay association within the clade likely coincides with the emergence of large areas of clay soils in the Miocene deposited during the Andean uplift. Character optimizations revealed that soil association was not phylogenetically clustered for white-sand and clay specialists, suggesting repeated independent evolution of soil specificity is common within the Protieae. This phylogenetic analysis also showed that multiple cases of putative sister taxa with parapatric distributions differ in their edaphic associations, suggesting that edaphic heterogeneity was an important driver of speciation in the Protieae in the Amazon basin.

Examining the Potential for Agricultural Benefits from Pollinator Habitat at Solar Facilities in the United States.

PubMed

Walston, Leroy J; Mishra, Shruti K; Hartmann, Heidi M; Hlohowskyj, Ihor; McCall, James; Macknick, Jordan

2018-06-13

Of the many roles insects serve for ecosystem function, pollination is possibly the most important service directly linked to human well-being. However, land use changes have contributed to the decline of pollinators and their habitats. In agricultural landscapes that also support renewable energy developments such as utility-scale solar energy [USSE] facilities, opportunities may exist to conserve insect pollinators and locally restore their ecosystem services through the implementation of vegetation management approaches that aim to provide and maintain pollinator habitat at USSE facilities. As a first step toward understanding the potential agricultural benefits of solar-pollinator habitat, we identified areas of overlap between USSE facilities and surrounding pollinator-dependent crop types in the United States (U.S.). Using spatial data on solar energy developments and crop types across the U.S., and assuming a pollinator foraging distance of 1.5 km, we identified over 3,500 km 2 of agricultural land near existing and planned USSE facilities that may benefit from increased pollination services through the creation of pollinator habitat at the USSE facilities. The following five pollinator-dependent crop types accounted for over 90% of the agriculture near USSE facilities, and these could benefit most from the creation of pollinator habitat at existing and planned USSE facilities: soybeans, alfalfa, cotton, almonds, and citrus. We discuss how our results may be used to understand potential agro-economic implications of solar-pollinator habitat. Our results show that ecosystem service restoration through the creation of pollinator habitat could improve the sustainability of large-scale renewable energy developments in agricultural landscapes.

Multiscale habitat selection by Ruffed Grouse at low population densities

USGS Publications Warehouse

Zimmerman, G.S.; Gutierrez, R.J.; Thogmartin, W.E.; Banerjee, S.

2009-01-01

Theory suggests habitats should be chosen according to their relative evolutionary benefits and costs. It has been hypothesized that aspen (Populus spp.) forests provide optimal habitat for Ruffed Grouse (Bonasa umbellus). We used the low phase of a grouse population's cycle to assess the prediction that grouse should occupy aspen and avoid other forest types at low population density because of the presumptive fitness benefits of aspen. On the basis of our observations, we predict how the Ruffed Grouse population will increase in different forest types during the next cycle. In conifer (Pinus spp., Abies balsamea, Picea spp.)-dominated and mixed aspen-conifer landscapes, grouse densities were highest where forest types were evenly distributed. Within these landscapes, male Ruffed Grouse selected young aspen stands that were large and round or square. Although Ruffed Grouse selected young aspen stands strongly, contrary to prediction, they also used other forest types even when young aspen stands remained unoccupied. The relative densities of Ruffed Grouse in aspen and conifer forests indicated that the aspen forest's carrying capacities for grouse was higher than the conifer forest's at least during the low and declining phases of the grouse's cycle. On the basis of our observations, we predict that Ruffed Grouse populations in aspen-dominated landscapes will have higher population densities and fluctuate more than will populations in conifer-dominated landscapes. We suggest that studies of avian habitat selection would benefit from knowledge about the relative densities among habitats at differing population sizes because this information could provide insight into the role of habitat in regulating populations and clarify inferences from studies about habitat quality for birds. ?? 2009 by The Cooper Ornithological Society. All rights reserved.

Species composition, diversity and relative abundance of amphibians in forests and non-forest habitats on Langkawi Island, Peninsular Malaysia

NASA Astrophysics Data System (ADS)

Nur Johana, J.; Muzzneena, A. M.; Grismer, L. L.; Norhayati, A.

2016-11-01

Anurans on Langkawi Island, Peninsular Malaysia exhibit variation in their habits and forms, ranging from small (SVL < 25 mm) to large (SVL > 150 mm), and occupy a range of habitats, such as riverine forests, agricultural fields, peat swamps, and lowland and upland dipterocarp forests. These variations provide a platform to explore species diversity, distribution, abundance, microhabitat, and other ecological parameters to understand the distribution patterns and to facilitate conservation and management of sensitive or important species and areas. The objective of this study was to evaluate the diversity and distribution of anuran species in different types of habitat on Langkawi Island. Specimens were collected based on active sampling using the Visual Encounter Survey (VES) method. We surveyed anuran species inhabiting seven types of habitat, namely agriculture (AG), coastal (CL), forest (FT), pond (PD), mangrove (MG), riparian forest (RF) and river (RV). A total of 775 individuals were sampled from all localities, representing 23 species from 12 genera and included all six families of frogs in Malaysia. FT and RF showed high values of Shannon Index, H', 2.60 and 2.38, respectively, followed by the other types of habitat, CL (1.82), RV (1.71), MG (1.56), PD (1.54), and AG (1.53). AG had the highest abundance (156 individuals) compared to other habitat types. Based on Cluster Analysis by using Jaccard coefficient (UPGMA), two groups can be clearly seen and assigned as forested species group (FT and RF) and species associating with human activity (AG, CL, PD, MG and RV). Forest species group is more diverse compared to non-forest group. Nevertheless, non-forest species are found in abundance, highlighting the relevance of these disturbed habitats in supporting the amphibians.

Larval habitats of anopheline mosquitoes in the Upper Orinoco, Venezuela.

PubMed

Rejmánková, E; Rubio-Palis, Y; Villegas, L

1999-12-01

Survey of larval habitats of anopheline mosquitoes was conducted in Ocamo in the State of Amazonas, southern Venezuela. The sampled habitats belonged to three different hydrological types: lagoons (26 habitats), forest pools including flooded forest (16 habitats), and forest streams (4 habitats). Out of 46 habitats surveyed, 31 contained anopheline larvae. Six species were found: Anopheles darlingi, Anopheles triannulatus, Anopheles oswaldoi, Anopheles peryassui, Anopheles punctimacula, and Anopheles mediopunctatus. Anopheles triannulatus was the most abundant species. Significantly higher numbers of anopheline larvae, in general, and of An. triannulatus specifically were found in lagoons with submersed macrophytes and sparse emergent graminoids than in forest pools with detritus.

Vegetation cover and relationships of habitat-type with elevation on the Mississippi-Alabama Barrier Islands in the initial six years after Hurricane Katrina

NASA Astrophysics Data System (ADS)

Funderburk, W.; Carter, G. A.; Anderson, C. P.; Jeter, G. W., Jr.; Otvos, E. G.; Lucas, K. L.; Hopper, N. L.

2015-12-01

Quantifying change in vegetation and geomorphic features which occur during and after storm impact is necessary toward understanding barrier island habitat resiliency under continued climate warming and sea level rise. In August, 2005, the Mississippi-Alabama barrier islands, including, from west-to-east, Cat, West Ship, East Ship, Horn, Petit Bois and Dauphin islands, were completely inundated by the tidal surge of Hurricane Katrina. Overwash, scouring, burial under sand, and mechanical damage combined with saltwater flooding and post-storm drought resulted in immediate and long-term vegetation loss. Remotely-sensed data acquired before (2004-2005) and after (2005-2011) Katrina were compared via image classification to determine immediate storm impacts and assess natural re-growth of land area and vegetation. By 2008, merely three years after the storm, total land area of Cat, West Ship, East Ship, Horn, Petit Bois and West Dauphin had recovered to 92, 90, 33, 99, 93 and 91 percent, and total vegetated land area to 85, 101, 85, 94, 83 and 102 percent of pre-Katrina values, respectively. Habitat-type maps developed from field survey, SPOT-5 and radar data were compared with LIDAR-derived elevation models to assess 2010 habitat-type distribution with respect to ground elevation. Although median MSL elevations associated with habitat classes ranged only from 0.5 m to 1.4 m, habitat-type changed distinctively with decimeter-scale changes in elevation. Low marsh, high marsh, estuarine shrubland, slash pine woodland, beach dune, bare sand and beach dune herbland were associated with median elevations of 0.5, 0.9, 1.0, 1.1, 1.2, 1.3 and 1.4 m ± 0.1 m, respectively. The anticipated increases in sea level and tropical storm energy under a continually warming climate will likely inhibit the reformation of higher-elevation habitat-types, such as shrublands and woodlands, in the 21st century.

Relationships of forest vegetation to habitat on two types of glacial drift in New Hampshire

Treesearch

William B. Leak

1978-01-01

Species composition and site index were determined on nine tree habitats in an area of schistose drift and compared with previous findings on habitats with granitic drift. Habitats on schistose drift supported more sugar maple and had somewhat higher site indexes. Compact tills in schistose drift supported northern hardwoods, and the site indexes for yellow birch were...

Managing for featured, threatened, endangered, and sensitive species and unique habitats for ecosystem sustainability.

Treesearch

Bruce G. Marcot; Michael J. Wisdom; Hiram W. Li; Gonzalo C. Castillo

1994-01-01

The traditional approach to wildlife management has focused on single species—historically game species and more recently threatened and endangered species. Several newer approaches to managing for multiple species and biological diversity include managing coarse filters, ecological indicator species, indicator guilds, and use of species-habitat matrices. These and...

Comparing riparian and catchment influences on stream habitat in a forested, montane landscape.

Treesearch

K.M. Burnett; G.H. Reeves

2006-01-01

The goal of this study was to understand relationships between salmon habitat and landscape characteristics, summarized at multiple spatial scales, in a montane basin where forestry is the dominant land use. Specific study objectives were to (1) examine differences among spatial scales for landscape characteristics described with relatively coarse-resolution data, (2)...

Trading off species protection and timber production in forests managed for multiple objectives

Treesearch

Vladimir Marianov; Stephanie Snyder; Charles ReVelle

2004-01-01

We address a multiobjective forest-management problem that maximizes harvested timber volume and maximizes the protection of species through the selection of protected habitat reserves. As opposed to reserving parcels of the forest for general habitat purposes, as most published works do, the model we present, and its several variants, concentrate on the preservation...

Riparian soil seed banks and the potential for passive restoration of giant reed infested areas in Webb County, Texas

USDA-ARS?s Scientific Manuscript database

Habitat restoration projects can use seed bank information as early warning systems of patterns or degrees of habitat degradation; as changes in above ground vegetation directly impact below ground seed distribution. In multiple strategy restoration efforts, seed bank quality can be used as a decidi...

A Process-Based Assessment for Watershed Restoration Planning, Chehalis River Basin, USA

NASA Astrophysics Data System (ADS)

Beechie, T. J.; Thompson, J.; Seixas, G.; Fogel, C.; Hall, J.; Chamberlin, J.; Kiffney, P.; Pollock, M. M.; Pess, G. R.

2016-12-01

Three key questions in identifying and prioritizing river restoration are: (1) How have habitats changed?, (2) What are the causes of those habitat changes?, and (3) How of those changes affected the species of interest? To answer these questions and assist aquatic habitat restoration planning in the Chehalis River basin, USA, we quantified habitat changes across the river network from headwaters to the estuary. We estimated historical habitat capacity to support salmonids using a combination of historical assessments, reference sites, and models. We also estimated current capacity from recent or newly created data sets. We found that losses of floodplain habitats and beaver ponds were substantial, while the estuary was less modified. Both tributary and main channel habitats—while modified—did not show particularly large habitat changes. Assessments of key processes that form and sustain habitats indicate that riparian functions (shading and wood recruitment) have been significantly altered, although peak and low flows have also been altered in some locations. The next step is to link our habitat assessments to salmon life-cycle models to evaluate which life stages and habitat types currently constrain population sizes of spring and fall Chinook salmon, coho salmon, and steelhead. By comparing model runs that represent different components of habitat losses identified in the analysis above, life-cycle models help identify which habitat losses have most impacted each species and population. This assessment will indicate which habitat types provide the greatest restoration potential, and help define a guiding vision for restoration efforts. Future analyses may include development and evaluation of alternative restoration scenarios, including different climate change scenarios, to refine our understanding of which restoration actions provide the greatest benefit to a salmon population.

Coastal habitats as surrogates for taxonomic, functional and trophic structures of benthic faunal communities.

PubMed

Törnroos, Anna; Nordström, Marie C; Bonsdorff, Erik

2013-01-01

Due to human impact, there is extensive degradation and loss of marine habitats, which calls for measures that incorporate taxonomic as well as functional and trophic aspects of biodiversity. Since such data is less easily quantifiable in nature, the use of habitats as surrogates or proxies for biodiversity is on the rise in marine conservation and management. However, there is a critical gap in knowledge of whether pre-defined habitat units adequately represent the functional and trophic structure of communities. We also lack comparisons of different measures of community structure in terms of both between- (β) and within-habitat (α) variability when accounting for species densities. Thus, we evaluated a priori defined coastal habitats as surrogates for traditional taxonomic, functional and trophic zoobenthic community structure. We focused on four habitats (bare sand, canopy-forming algae, seagrass above- and belowground), all easily delineated in nature and defined through classification systems. We analyzed uni- and multivariate data on species and trait diversity as well as stable isotope ratios of benthic macrofauna. A good fit between habitat types and taxonomic and functional structure was found, although habitats were more similar functionally. This was attributed to within-habitat heterogeneity so when habitat divisions matched the taxonomic structure, only bare sand was functionally distinct. The pre-defined habitats did not meet the variability of trophic structure, which also proved to differentiate on a smaller spatial scale. The quantification of trophic structure using species density only identified an epi- and an infaunal unit. To summarize the results we present a conceptual model illustrating the match between pre-defined habitat types and the taxonomic, functional and trophic community structure. Our results show the importance of including functional and trophic aspects more comprehensively in marine management and spatial planning.

Pollinator diversity and reproductive success of Epipactis helleborine (L.) Crantz (Orchidaceae) in anthropogenic and natural habitats

PubMed Central

Jaskuła, Radomir; Rewicz, Tomasz; Tończyk, Grzegorz

2017-01-01

Background Epipactis helleborine is an Eurasian orchid species which prefers woodland environments but it may also spontaneously and successfully colonise human-made artificial and disturbed habitats such as roadsides, town parks and gardens. It is suggested that orchids colonising anthropogenic habitats are characterised by a specific set of features (e.g., large plant size, fast flower production). However, as it is not well known how pollinator diversity and reproductive success of E. helleborine differs in populations in anthropogenic habitats compared to populations from natural habitats, we wanted to compare pollinator diversity and reproductive success of this orchid species between natural and anthropogenic habitat types. Methods Pollination biology, reproductive success and autogamy in populations of E. helleborine from anthropogenic (roadside) and natural (forest) habitats were compared. Eight populations (four natural and four human-disturbed ones) in two seasons were studied according to height of plants, length of inflorescences, as well as numbers of juvenile shoots, flowering shoots, flowers, and fruits. The number and diversity of insect pollinators were studied in one natural and two human-disturbed populations. Results Reproductive success (the ratio of the number of flowers to the number of fruits) in the populations from anthropogenic habitats was significantly higher than in the natural habitats. Moreover, plants from anthropogenic habitats were larger than those from natural ones. In both types of populations, the main insect pollinators were Syrphidae, Culicidae, Vespidae, Apidae and Formicidae. With respect to the type of pollinators’ mouth-parts, chewing (39%), sponging (34%) and chewing-sucking (20%) pollinators prevailed in anthropogenic habitats. In natural habitats, pollinators with sponging (55%) and chewing mouth-parts (32%) dominated, while chewing-sucking and piercing-sucking insects accounted for 9% and 4% respectively. Discussion We suggest that higher reproductive success of E. helleborine in the populations from anthropogenic habitats than in the populations from natural habitats may result from a higher number of visits by pollinators and their greater species diversity, but also from the larger size of plants growing in such habitats. Moreover, our data clearly show that E. helleborine is an opportunistic species with respect to pollinators, with a wide spectrum of pollinating insects. Summarising, E. helleborine is a rare example of orchid species whose current range is not declining. Its ability to make use of anthropogenically altered habitats has allowed its significant spatial range expansion, and even successful colonisation of North America. PMID:28439457

Pigment compositions are linked to the habitat types in dinoflagellates.

PubMed

Yamada, Norico; Tanaka, Ayumi; Horiguchi, Takeo

2015-11-01

Compared to planktonic species, there is little known about the ecology, physiology, and existence of benthic dinoflagellates living in sandy beach or seafloor environments. In a previous study, we discovered 13(2),17(3)-cyclopheophorbide a enol (cPPB-aE) from sand-dwelling benthic dinoflagellates. This enol had never been detected in phytoplankton despite the fact that it is a chlorophyll a catabolite. We speculated from this discovery that habitat selection might be linked to pigment compositions in dinoflagellates. To test the hypothesis of habitat selection linking to pigment compositions, we conducted extensive analysis of pigments with high performance liquid chromatography (HPLC) for 40 species using 45 strains of dinoflagellates including three habitat types; sand-dwelling benthic forms, tidal pool inhabitants and planktonic species. The 40 dinoflagellates are also able to be distinguished into two types based on their chloroplast origins; red alga-derived secondary chloroplasts and diatom-derived tertiary ones. By plotting the pigments profiles onto three habitats, we noticed that twelve pigments including cPPB-aE were found to occur only in benthic sand-dwelling species of red alga-derived type. The similar tendency was also observed in dinoflagellates with diatom-derived chloroplasts, i.e. additional sixteen pigments including chl c 3 were found only in sand-dwelling forms. This is the first report of the occurrence of chl c 3 in dinoflagellates with diatom-derived chloroplasts. These results clarify that far greater diversity of pigments are produced by the dinoflagellates living in sand regardless of chloroplast types relative to those of planktonic and tidal pool forms. Dinoflagellates seem to produce a part of their pigments in response to their habitats.

Integrating multiple distribution models to guide conservation efforts of an endangered toad

USGS Publications Warehouse

Treglia, Michael L.; Fisher, Robert N.; Fitzgerald, Lee A.

2015-01-01

Species distribution models are used for numerous purposes such as predicting changes in species’ ranges and identifying biodiversity hotspots. Although implications of distribution models for conservation are often implicit, few studies use these tools explicitly to inform conservation efforts. Herein, we illustrate how multiple distribution models developed using distinct sets of environmental variables can be integrated to aid in identification sites for use in conservation. We focus on the endangered arroyo toad (Anaxyrus californicus), which relies on open, sandy streams and surrounding floodplains in southern California, USA, and northern Baja California, Mexico. Declines of the species are largely attributed to habitat degradation associated with vegetation encroachment, invasive predators, and altered hydrologic regimes. We had three main goals: 1) develop a model of potential habitat for arroyo toads, based on long-term environmental variables and all available locality data; 2) develop a model of the species’ current habitat by incorporating recent remotely-sensed variables and only using recent locality data; and 3) integrate results of both models to identify sites that may be employed in conservation efforts. We used a machine learning technique, Random Forests, to develop the models, focused on riparian zones in southern California. We identified 14.37% and 10.50% of our study area as potential and current habitat for the arroyo toad, respectively. Generally, inclusion of remotely-sensed variables reduced modeled suitability of sites, thus many areas modeled as potential habitat were not modeled as current habitat. We propose such sites could be made suitable for arroyo toads through active management, increasing current habitat by up to 67.02%. Our general approach can be employed to guide conservation efforts of virtually any species with sufficient data necessary to develop appropriate distribution models.

Lunar base habitat designs: Characterizing the environment, and selecting habitat designs for future trade-offs

NASA Technical Reports Server (NTRS)

Ganapathi, Gani B.; Ferrall, Joseph; Seshan, P. K.

1993-01-01

A survey of distinct conceptual lunar habitat designs covering the pre- and post-Apollo era is presented. The impact of the significant lunar environmental challenges such as temperature, atmosphere, radiation, soil properties, meteorites, and seismic activity on the habitat design parameters are outlined. Over twenty habitat designs were identified and classified according to mission type, crew size; total duration of stay, modularity, environmental protection measures, and emplacement. Simple selection criteria of (1) post-Apollo design, (2) uniqueness of the habitat design, (3) level of thoroughness in design layout, (4) habitat dimensions are provided, and (5) materials of construction for the habitat shell are specified, are used to select five habitats for future trade studies. Habitat emplacement scenarios are created to examine the possible impact of emplacement of the habitat in different locations, such as lunar poles vs. equatorial, above ground vs. below ground, etc.

The precision problem in conservation and restoration

USGS Publications Warehouse

Hiers, J. Kevin; Jackson, Stephen T.; Hobbs, Richard J.; Bernhardt, Emily S.; Valentine, Leonie E.

2016-01-01

Within the varied contexts of environmental policy, conservation of imperilled species populations, and restoration of damaged habitats, an emphasis on idealized optimal conditions has led to increasingly specific targets for management. Overly-precise conservation targets can reduce habitat variability at multiple scales, with unintended consequences for future ecological resilience. We describe this dilemma in the context of endangered species management, stream restoration, and climate-change adaptation. Inappropriate application of conservation targets can be expensive, with marginal conservation benefit. Reduced habitat variability can limit options for managers trying to balance competing objectives with limited resources. Conservation policies should embrace habitat variability, expand decision-space appropriately, and support adaptation to local circumstances to increase ecological resilience in a rapidly changing world.

The functional value of Caribbean coral reef, seagrass and mangrove habitats to ecosystem processes.

PubMed

Harborne, Alastair R; Mumby, Peter J; Micheli, Fiorenza; Perry, Christopher T; Dahlgren, Craig P; Holmes, Katherine E; Brumbaugh, Daniel R

2006-01-01

Caribbean coral reef habitats, seagrass beds and mangroves provide important goods and services both individually and through functional linkages. A range of anthropogenic factors are threatening the ecological and economic importance of these habitats and it is vital to understand how ecosystem processes vary across seascapes. A greater understanding of processes will facilitate further insight into the effects of disturbances and assist with assessing management options. Despite the need to study processes across whole seascapes, few spatially explicit ecosystem-scale assessments exist. We review the empirical literature to examine the role of different habitat types for a range of processes. The importance of each of 10 generic habitats to each process is defined as its "functional value" (none, low, medium or high), quantitatively derived from published data wherever possible and summarised in a single figure. This summary represents the first time the importance of habitats across an entire Caribbean seascape has been assessed for a range of processes. Furthermore, we review the susceptibility of each habitat to disturbances to investigate spatial patterns that might affect functional values. Habitat types are considered at the scale discriminated by remotely-sensed imagery and we envisage that functional values can be combined with habitat maps to provide spatially explicit information on processes across ecosystems. We provide examples of mapping the functional values of habitats for populations of three commercially important species. The resulting data layers were then used to generate seascape-scale assessments of "hot spots" of functional value that might be considered priorities for conservation. We also provide an example of how the literature reviewed here can be used to parameterise a habitat-specific model investigating reef resilience under different scenarios of herbivory. Finally, we use multidimensional scaling to provide a basic analysis of the overall functional roles of different habitats. The resulting ordination suggests that each habitat has a unique suite of functional values and, potentially, a distinct role within the ecosystem. This review shows that further data are required for many habitat types and processes, particularly forereef and escarpment habitats on reefs and for seagrass beds and mangroves. Furthermore, many data were collected prior to the regional mass mortality of Diadema and Acropora, and subsequent changes to benthic communities have, in many cases, altered a habitat's functional value, hindering the use of these data for parameterising maps and models. Similarly, few data exist on how functional values change when environmental parameters, such as water clarity, are altered by natural or anthropogenic influences or the effects of a habitat's spatial context within the seascape. Despite these limitations, sufficient data are available to construct maps and models to better understand tropical marine ecosystem processes and assist more effective mitigation of threats that alter habitats and their functional values.

Stable isotope analysis of vertebrae reveals ontogenetic changes in habitat in an endothermic pelagic shark

PubMed Central

Carlisle, Aaron B.; Goldman, Kenneth J.; Litvin, Steven Y.; Madigan, Daniel J.; Bigman, Jennifer S.; Swithenbank, Alan M.; Kline, Thomas C.; Block, Barbara A.

2015-01-01

Ontogenetic changes in habitat are driven by shifting life-history requirements and play an important role in population dynamics. However, large portions of the life history of many pelagic species are still poorly understood or unknown. We used a novel combination of stable isotope analysis of vertebral annuli, Bayesian mixing models, isoscapes and electronic tag data to reconstruct ontogenetic patterns of habitat and resource use in a pelagic apex predator, the salmon shark (Lamna ditropis). Results identified the North Pacific Transition Zone as the major nursery area for salmon sharks and revealed an ontogenetic shift around the age of maturity from oceanic to increased use of neritic habitats. The nursery habitat may reflect trade-offs between prey availability, predation pressure and thermal constraints on juvenile endothermic sharks. The ontogenetic shift in habitat coincided with a reduction of isotopic niche, possibly reflecting specialization upon particular prey or habitats. Using tagging data to inform Bayesian isotopic mixing models revealed that adult sharks primarily use neritic habitats of Alaska yet receive a trophic subsidy from oceanic habitats. Integrating the multiple methods used here provides a powerful approach to retrospectively study the ecology and life history of migratory species throughout their ontogeny. PMID:25621332

The Emergent Properties of Conspecific Attraction Can Limit a Species' Ability to Track Environmental Change.

PubMed

Stodola, Kirk W; Ward, Michael P

2017-06-01

Multiple biotic, abiotic, and evolutionary constraints interact to determine a species' range. However, most species are not present in all suitable and accessible locations. Dispersal ability may explain why many species do not occupy all suitable habitat, but highly mobile species also exhibit a mismatch. Habitat selection behavior where individuals are site faithful and settle near conspecifics could create a social pressure that make a species' geographic range resistant to change. We investigated this possibility by using an individual-based model of habitat selection where habitat quality moved each year. Our model demonstrated the benefits of conspecific attraction in relatively stable environments and its detrimental influence when habitat quality shifted rapidly. These results were most apparent when adult survival was high, because site fidelity led to more individuals occupying poor-quality habitat areas as habitat quality changed. These individuals attracted other dispersing individuals, thereby decreasing the ability to track shifts in habitat quality, which we refer to as "social inertia." Consequently, social inertia may arise for species that exhibit site fidelity and conspecific attraction, which may have conservation implications in light of climate change and widespread alteration of natural habitats.

Habitat destruction and the extinction debt revisited

DOE Office of Scientific and Technical Information (OSTI.GOV)

Loehle, C.

1996-02-01

A very important analysis of the problem of habitat destruction concluded that such destruction may lead to an extinction debt, which is the irreversible loss of species following a prolonged transient or delay. An error in interpretation of this model led the authors to apply the results to all types of habitat destruction, but in fact the model applies only to an across-the-board decrease in fecundity, not to disturbances. For repeated, spatially random disturbance, a different model applies. For habitat destruction on regional scales (reduction in ecosystem area without disturbance in remnant areas), one must, in contrast, apply species-area relationsmore » based on the distribution of different habitat types (e.g., elevational and rainfall gradients, physiographic and edaphic variability). The error in interpretation of the basic model is presented, followed by clarification of model usage and development of a new model that applies to disturbance events.« less

Mosquito Larval Habitats, Land Use, and Potential Malaria Risk in Northern Belize from Satellite Image Analyses

NASA Technical Reports Server (NTRS)

Pope, Kevin; Masuoka, Penny; Rejmankova, Eliska; Grieco, John; Johnson, Sarah; Roberts, Donald

2004-01-01

The distribution of Anopheles mosquito habitats and land use in northern Belize is examined with satellite data. -A land cover classification based on multispectral SPOT and multitemporal Radarsat images identified eleven land cover classes, including agricultural, forest, and marsh types. Two of the land cover types, Typha domingensis marsh and flooded forest, are Anopheles vestitipennis larval habitats. Eleocharis spp. marsh is the larval habitat for Anopheles albimanus. Geographic Information Systems (GIS) analyses of land cover demonstrate that the amount of T-ha domingensis in a marsh is positively correlated with the amount of agricultural land in the adjacent upland, and negatively correlated with the amount of adjacent forest. This finding is consistent with the hypothesis that nutrient (phosphorus) runoff from agricultural lands is causing an expansion of Typha domingensis in northern Belize. This expansion of Anopheles vestitipennis larval habitat may in turn cause an increase in malaria risk in the region.

Characterization of marine debris in North Carolina salt marshes.

PubMed

Viehman, Shay; Vander Pluym, Jenny L; Schellinger, Jennifer

2011-12-01

Marine debris composition, density, abundance, and accumulation were evaluated in salt marshes in Carteret County, North Carolina seasonally between 2007 and 2009. We assessed relationships between human use patterns and debris type. Wave effects on marine debris density were examined using a GIS-based forecasting tool. We assessed the influence of site wave exposure, period, and height on debris quantity. Presence and abundance of debris were related to wave exposure, vegetation type and proximity of the strata to human population and human use patterns. Plastic pieces accounted for the majority of all debris. Small debris (0-5 cm) was primarily composed of foam pieces and was frequently affiliated with natural wrack. Large debris (>100 cm) was encountered in all marsh habitat types surveyed and was primarily composed of anthropogenic wood and derelict fishing gear. Marsh cleanup efforts should be targeted to specific habitat types or debris types to minimize further damage to sensitive habitats. Published by Elsevier Ltd.

Mourning Dove nesting habitat and nest success in Central Missouri

USGS Publications Warehouse

Drobney, R.D.; Schulz, J.H.; Sheriff, S.L.; Fuemmeler, W.J.

1998-01-01

Previous Mourning Dove (Zenaida macroura) nesting studies conducted in areas containing a mixture of edge and continuous habitats have focused on edge habitats. Consequently, little is known about the potential contribution of continuous habitats to dove production. In this study we evaluated the relative importance of these two extensive habitat types by monitoring the habitat use and nest success of 59 radio-marked doves during 1990-1991 in central Missouri. Of 83 nests initiated by our marked sample, most (81.9%) were located in edge habitats. Although continuous habitats were selected less as nest sites, the proportion of successful nests did not differ significantly from that in edge habitats. Our data indicate that continuous habitats should not be considered marginal nesting habitat. If the intensity of use and nest success that we observed are representative regionally or nationally, continuous habitats could contribute substantially to annual Mourning Dove production because of the high availability of these habitats throughout much of the Mourning Dove breeding range.

Habitat Evaluation Procedures (HEP) Report : Hellsgate Project, 1999-2000 Technical Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Berger, Matthew

2000-05-01

A Habitat Evaluation Procedure (HEP) study was conducted on lands acquired and/or managed (4,568 acres total) by the Hellsgate Big Game Winter Range Wildlife Mitigation Project (Hellsgate project) to mitigate some of the losses associated with the original construction and operation of Grand Coulee Dam and inundation of habitats behind the dams. Three separate properties, totaling 2,224 acres were purchased in 1998. One property composed of two separate parcels, mostly grassland lies southeast of the town of Nespelem in Okanogan County (770 acres) and was formerly called the Hinman property. The former Hinman property lies within an area the Tribesmore » have set aside for the protection and preservation of the sharp-tailed grouse (Agency Butte unit). This special management area minus the Hinman acquisition contains 2,388 acres in a long-term lease with the Tribes. The second property lies just south of the Silver Creek turnoff (Ferry County) and is bisected by the Hellsgate Road (part of the Friedlander unit). This parcel contains 60 acres of riparian and conifer forest cover. The third property (now named the Sand Hills unit) acquired for mitigation (1,394 acres) lies within the Hellsgate Reserve in Ferry County. This new acquisition links two existing mitigation parcels (the old Sand Hills parcels and the Lundstrum Flat parcel, all former Kuehne purchases) together forming one large unit. HEP team members included individuals from the Colville Confederated Tribes Fish and Wildlife Department (CTCR), Washington Department of Fish and Wildlife (WDFW), and Bureau of Land Management (BLM). The HEP team conducted a baseline habitat survey using the following HEP species models: mule deer (Odocoileus hemionus), mink (Mustela vison), downy woodpecker (Picoides pubescens), bobcat (Lynx rufus), yellow warbler (Dendroica petechia), and sharp-tailed grouse (Tympanuchus phasianellus columbianus). HEP analysis and results are discussed within the body of the text. The cover types evaluated for this study were grasslands, shrub-steppe, rock, conifer forest and woodland, and riparian. These same cover types were evaluated for other Hellsgate Project acquisitions within the same geographic area. Mule deer habitat on the Sand Hills unit rated good overall for winter food and cover in the shrub-steppe and conifer woodland cover types. Sharp-tailed grouse habitat on the former Hinman property and special management area rated good for nesting and brood rearing in the grassland cover type. Mink habitat on the Friedlander parcel rated poor due to lack of food and cover in and along the riparian cover type. The Downy woodpecker rated poor for food and cover on the Friedlander parcel in the conifer forest cover type. This species also rated poor on the conifer woodland habitat on the Hinman parcel. Yellow warbler habitat on the Agency Butte Special Management area rated very poor due to lack of shrubs for cover and reproduction around the scattered semi/permanent ponds that occur on the area. Bobcat habitat on this same area rated poor due to lack of cover and food. Fragmentation of existing quality habitat is also a problem for both these species. This report is an analysis of baseline habitat conditions on mitigation and managed lands, and provides estimated habitat units for mitigation crediting purposes. In addition, this information will be used to manage these lands for the benefit of wildlife.« less

Estuarine Biotope Mosaics and Habitat Management Goals: An Application in Tampa Bay, Florida, USA

EPA Science Inventory

Many types of anthropogenic stress to estuaries lead to destruction and conversion of habitats, thus altering habitat landscapes and changing the “arena” in which the life history interactions of native fauna take place. This can lead to decreased populations of valued fauna, an...