Age-related cerebral white matter changes and pulse-wave encephalopathy: observations with three-dimensional MRI.

PubMed

Henry Feugeas, Marie Cécile; De Marco, Giovanni; Peretti, Ilana Idy; Godon-Hardy, Sylvie; Fredy, Daniel; Claeys, Elisabeth Schouman

2005-11-01

Our purpose was to investigate leukoaraïosis (LA) using three-dimensional MR imaging combined with advanced image-processing technology to attempt to group signal abnormalities according to their etiology. Coronal T2-weighted fast fluid-attenuated inversion-recovery (FLAIR) sequences and three-dimensional T1-weighted fast spoiled gradient recalled echo sequences were used to examine cerebral white matter changes in 75 elderly people with memory complaint but no dementia. They were otherwise healthy, community-dwelling subjects. Three subtypes of LA were defined on the basis of their shape, geography and extent: the so-called subependymal/subpial LA, perivascular LA and "bands" along long white matter tracts. Subependymal changes were directly contiguous with ventricular spaces. They showed features of "water hammer" lesions with ventricular systematisation and a more frequent location around the frontal horns than around the bodies (P=.0008). The use of cerebrospinal fluid (CSF) contiguity criterion allowed a classification of splenial changes in the subpial group. Conversely, posterior periventricular lesions in the centrum ovale as well as irregular and extensive periventricular lesions were not directly contiguous with CSF spaces. The so-called perivascular changes showed features of small-vessel-associated disease; they surrounded linear CSF-like signals that followed the direction of perforating vessels. Distribution of these perivascular changes appeared heterogeneous (P ranging from .04 to 5.10(-16)). These findings suggest that subependymal/subpial LA and subcortical LA may be separate manifestations of a single underlying pulse-wave encephalopathy.

Line intersect sampling: Ell-shaped transects and multiple intersections

Treesearch

Timothy G. Gregoire; Harry T. Valentine

2003-01-01

The probability of selecting a population element under line intersect sampling depends on the width of the particle in the direction perpendicular to the transect, as is well known. The consequence of this when using ell-shaped transects rather than straight-line transects are explicated, and modifications that preserve design-unbiasedness of Kaiser's (1983)...

Design unbiased estimation in line intersect sampling using segmented transects

Treesearch

David L.R. Affleck; Timothy G. Gregoire; Harry T. Valentine; Harry T. Valentine

2005-01-01

In many applications of line intersect sampling. transects consist of multiple, connected segments in a prescribed configuration. The relationship between the transect configuration and the selection probability of a population element is illustrated and a consistent sampling protocol, applicable to populations composed of arbitrarily shaped elements, is proposed. It...

Multiple hippocampal transections for intractable hippocampal epilepsy: Seizure outcome.

PubMed

Koubeissi, Mohamad Z; Kahriman, Emine; Fastenau, Philip; Bailey, Christopher; Syed, Tanvir; Amina, Shahram; Miller, Jonathan; Munyon, Charles; Tanner, Adriana; Karanec, Kristina; Tuxhorn, Ingrid; Lüders, Hans

2016-05-01

The purpose of this study was to evaluate the seizure outcomes after transverse multiple hippocampal transections (MHTs) in 13 patients with intractable TLE. Thirteen patients with normal memory scores, including 8 with nonlesional hippocampi on MRI, had temporal lobe epilepsy (TLE) necessitating depth electrode implantation. After confirming hippocampal seizure onset, they underwent MHT. Intraoperative monitoring was done with 5-6 hippocampal electrodes spaced at approximately 1-cm intervals and spike counting for 5-8min before each cut. The number of transections ranged between 4 and 7. Neuropsychological assessment was completed preoperatively and postoperatively for all patients and will be reported separately. Duration of epilepsy ranged between 5 and 55years. There were no complications. Intraoperatively, MHT resulted in marked spike reduction (p=0.003, paired t-test). Ten patients (77%) are seizure-free (average follow-up was 33months, range 20-65months) without medication changes. One of the 3 patients with persistent seizures had an MRI revealing incomplete transections, another had an additional neocortical seizure focus (as suggested by pure aphasic seizures), and the third had only 2 seizures in 4years, one of which occurred during antiseizure medication withdrawal. Verbal and visual memory outcomes will be reported separately. Right and left hippocampal volumes were not different preoperatively (n=12, p=0.64, Wilcoxon signed-rank test), but the transected hippocampal volume decreased postoperatively (p=0.0173). Multiple hippocampal transections provide an effective intervention and a safe alternative to temporal lobectomy in patients with hippocampal epilepsy. Copyright © 2016 Elsevier Inc. All rights reserved.

Cranial nerve monitoring during subpial dissection in temporomesial surgery.

PubMed

Ortler, Martin; Fiegele, Thomas; Walser, Gerald; Trinka, Eugen; Eisner, Wilhelm

2011-06-01

Cranial nerves (CNs) crossing between the brainstem and skull base at the level of the tentorial hiatus may be at risk in temporomesial surgery involving subpial dissection and/or tumorous growth leading to distorted anatomy. We aimed to identify the surgical steps most likely to result in CN damage in this type of surgery. Electromyographic responses obtained with standard neuromonitoring techniques and a continuous free-running EMG were graded as either contact activity or pathological spontaneous activity (PSA) during subpial resection of temporomesial structures in 16 selective amygdalohippocampectomy cases. Integrity of peripheral motor axons was tested by transpial/transarachnoidal electrical stimulation while recording compound muscle action potentials from distal muscle(s). Continuous EMG showed pathological activity in five (31.2%) patients. Nine events with PSA (slight activity, n = 8; strong temporary activity, n = 1) were recorded. The oculomotor nerve was involved three times, the trochlear nerve twice, the facial nerve once, and all monitored nerves on three occasions. Surgical maneuvers associated with PSA were the resection of deep parts of the hippocampus and parahippocampal gyrus (CN IV, twice; CN III, once), lining with or removing cotton patties from the resection cavity (III, twice; all channels, once) and indirect exertion of tension on the intact pia/arachnoid of the uncal region while mobilizing the hippocampus and parahippocampal gyrus en bloc (all channels, once; III, once). CMAPs were observed at 0.3 mA in two patients and at 0.6 mA in one patient, and without registering the exact amount of intensity in three patients. The most dangerous steps leading to cranial nerve damage during mesial temporal lobe surgery are the final stages of the intervention while the resection is being completed in the deep posterior part and the resection cavity is being lined with patties. Distant traction may act on nerves crossing the tentorial hiatus via the intact arachnoid.

Edge Effects in Line Intersect Sampling With

Treesearch

David L. R. Affleck; Timothy G. Gregoire; Harry T. Valentine

2005-01-01

Transects consisting of multiple, connected segments with a prescribed configuration are commonly used in ecological applications of line intersect sampling. The transect configuration has implications for the probability with which population elements are selected and for how the selection probabilities can be modified by the boundary of the tract being sampled. As...

Density (DE)

Treesearch

John F. Caratti

2006-01-01

The FIREMON Density (DE) method is used to assess changes in plant species density and height for a macroplot. This method uses multiple quadrats and belt transects (transects having a width) to sample within plot variation and quantify statistically valid changes in plant species density and height over time. Herbaceous plant species are sampled with quadrats while...

Identifying localized and scale-specific multivariate controls of soil organic matter variations using multiple wavelet coherence.

PubMed

Zhao, Ruiying; Biswas, Asim; Zhou, Yin; Zhou, Yue; Shi, Zhou; Li, Hongyi

2018-06-23

Environmental factors have shown localized and scale-dependent controls over soil organic matter (SOM) distribution in the landscape. Previous studies have explored the relationships between SOM and individual controlling factors; however, few studies have indicated the combined control from multiple environmental factors. In this study, we compared the localized and scale-dependent univariate and multivariate controls of SOM along two long transects (northeast, NE transect and north, N transect) from China. Bivariate wavelet coherence (BWC) between SOM and individual factors and multiple wavelet coherence (MWC) between SOM and factor combinations were calculated. Average wavelet coherence (AWC) and percent area of significant coherence (PASC) were used to assess the relative dominance of individual and a combination of factors to explain SOM variations at different scales and locations. The results showed that (in BWC analysis) mean annual temperature (MAT) with the largest AWC (0.39) and PASC (16.23%) was the dominant factor in explaining SOM variations along the NE transect. The topographic wetness index (TWI) was the dominant factor (AWC = 0.39 and PASC = 20.80%) along the N transect. MWC identified the combination of Slope, net primary production (NPP) and mean annual precipitation (MAP) as the most important combination in explaining SOM variations along the NE transect with a significant increase in AWC and PASC at different scales and locations (e.g. AWC = 0.91 and PASC = 58.03% at all scales). The combination of TWI, NPP and normalized difference vegetation index (NDVI) was the most influential along the N transect (AWC = 0.83 and PASC = 32.68% at all scales). The results indicated that the combined controls of environmental factors on SOM variations at different scales and locations in a large area can be identified by MWC. This is promising for a better understanding of the multivariate controls in SOM variations at larger spatial scales and may improve the capability of digital soil mapping. Copyright © 2018 Elsevier B.V. All rights reserved.

Transection of the inferior vena cava from blunt thoracic trauma: case reports.

PubMed

Peitzman, A B; Udekwu, A O; Pevec, W; Albrink, M

1989-04-01

Blunt thoracic trauma is a frequent cause of death in multiple trauma victims. Myocardial rupture may occur in up to 65% of patients who die with thoracic injuries. Two cases are presented with intrapericardial transection of the inferior vena cava, pericardial rupture, and myocardial rupture from blunt thoracic trauma. Both patients died.

Double-observer line transect surveys with Markov-modulated Poisson process models for animal availability.

PubMed

Borchers, D L; Langrock, R

2015-12-01

We develop maximum likelihood methods for line transect surveys in which animals go undetected at distance zero, either because they are stochastically unavailable while within view or because they are missed when they are available. These incorporate a Markov-modulated Poisson process model for animal availability, allowing more clustered availability events than is possible with Poisson availability models. They include a mark-recapture component arising from the independent-observer survey, leading to more accurate estimation of detection probability given availability. We develop models for situations in which (a) multiple detections of the same individual are possible and (b) some or all of the availability process parameters are estimated from the line transect survey itself, rather than from independent data. We investigate estimator performance by simulation, and compare the multiple-detection estimators with estimators that use only initial detections of individuals, and with a single-observer estimator. Simultaneous estimation of detection function parameters and availability model parameters is shown to be feasible from the line transect survey alone with multiple detections and double-observer data but not with single-observer data. Recording multiple detections of individuals improves estimator precision substantially when estimating the availability model parameters from survey data, and we recommend that these data be gathered. We apply the methods to estimate detection probability from a double-observer survey of North Atlantic minke whales, and find that double-observer data greatly improve estimator precision here too. © 2015 The Authors Biometrics published by Wiley Periodicals, Inc. on behalf of International Biometric Society.

Laparoscopic liver resection: when to use the laparoscopic stapler device

PubMed Central

Gumbs, Andrew A.; Gayet, Brice

2008-01-01

Minimally invasive hepatic resection was first described by Gagner et al. in the early 1990s and since then has become increasingly adopted by hepatobiliary and liver transplant surgeons. Several techniques exist to transect the hepatic parenchyma laparoscopically and include transection with stapler and/or energy devices, such as ultrasonic shears, radiofrequency ablation and bipolar devices. We believe that coagulative techniques allow for superior anatomic resections and ultimately permit for the performance of more complex hepatic resections. In the stapling technique, Glisson's capsule is usually incised with an energy device until the parenchyma is thinned out and multiple firings of the staplers are then used to transect the remaining parenchyma and larger bridging segmental vessels and ducts. Besides the economic constraints of using multiple stapler firings, the remaining staples have the disadvantage of hindering and even preventing additional hemostasis of the raw liver surface with monopolar and bipolar electrocautery. The laparoscopic stapler device is, however, useful for transection of the main portal branches and hepatic veins during minimally invasive major hepatic resections. Techniques to safely perform major hepatic resection with the above techniques will be described with an emphasis on when and how laparoscopic vascular staplers should be used. PMID:18773113

Consequences of Neurite Transection In Vitro

PubMed Central

Cengiz, Nurettin; Erdoğan, Ender; Him, Aydın; Oğuz, Elif Kaval

2012-01-01

Abstract In order to quantify degenerative and regenerative changes and analyze the contribution of multiple factors to the outcome after neurite transection, we cultured adult mouse dorsal root ganglion neurons, and with a precise laser beam, we transected the nerve fibers they extended. Cell preparations were continuously visualized for 24 h with time-lapse microscopy. More distal cuts caused a more elongated field of degeneration, while thicker neurites degenerated faster than thinner ones. Transected neurites degenerated more if the uncut neurites of the same neuron simultaneously degenerated. If any of these uncut processes regenerated, the transected neurites underwent less degeneration. Regeneration of neurites was limited to distal cuts. Unipolar neurons had shorter regeneration than multipolar ones. Branching slowed the regenerative process, while simultaneous degeneration of uncut neurites increased it. Proximal lesions, small neuronal size, and extensive and rapid neurite degeneration were predictive of death of an injured neuron, which typically displayed necrotic rather than apoptotic form. In conclusion, this in vitro model proved useful in unmasking many new aspects and correlates of mechanically-induced neurite injury. PMID:20121423

Evaluating the Patterns of Aging-Related Tau Astrogliopathy Unravels Novel Insights Into Brain Aging and Neurodegenerative Diseases.

PubMed

Kovacs, Gabor G; Robinson, John L; Xie, Sharon X; Lee, Edward B; Grossman, Murray; Wolk, David A; Irwin, David J; Weintraub, Dan; Kim, Christopher F; Schuck, Theresa; Yousef, Ahmed; Wagner, Stephanie T; Suh, Eunran; Van Deerlin, Vivianna M; Lee, Virginia M-Y; Trojanowski, John Q

2017-04-01

The term "aging-related tau astrogliopathy" (ARTAG) describes pathological accumulation of abnormally phosphorylated tau protein in astrocytes. We evaluated the correlates of ARTAG types (i.e., subpial, subependymal, white and gray matter, and perivascular) in different neuroanatomical regions. Clinical, neuropathological, and genetic (eg, APOE ε4 allele, MAPT H1/H2 haplotype) data from 628 postmortem brains from subjects were investigated; most of the patients had been longitudinally followed at the University of Pennsylvania. We found that (i) the amygdala is a hotspot for all ARTAG types; (ii) age at death, male sex, and presence of primary frontotemporal lobar degeneration (FTLD) tauopathy are significantly associated with ARTAG; (iii) age at death, greater degree of brain atrophy, ventricular enlargement, and Alzheimer disease (AD)-related variables are associated with subpial, white matter, and perivascular ARTAG types; (iv) AD-related variables are associated particularly with lobar white matter ARTAG; and (v) gray matter ARTAG in primary FTLD-tauopathies appears in areas without neuronal tau pathology. We provide a reference map of ARTAG types and propose at least 5 constellations of ARTAG. Furthermore, we propose a conceptual link between primary FTLD-tauopathy and ARTAG-related astrocytic tau pathologies. Our observations serve as a basis for etiological stratification and definition of progression patterns of ARTAG. © 2017 American Association of Neuropathologists, Inc. All rights reserved.

Electron Microscopic Study of Demyelination in an Experimentally Induced Lesion in Adult Cat Spinal Cord

PubMed Central

Bunge, Richard P.; Bunge, Mary Bartlett; Ris, Hans

1960-01-01

Plaques of subpial demyelination were induced in adult cat spinal cords by repeated withdrawal and reinjection of cerebrospinal fluid. Peripheral cord was fixed by replacing cerebrospinal fluid available at cisternal puncture with 3 per cent buffered OsO4. Following extirpation, surface tissue was further fixed in 2 per cent buffered OsO4, dehydrated in ethanol, and embedded in araldite. Normal subpial cord consists mainly of myelinated axons and two types of macroglia, fibrous astrocytes and oligodendrocytes. Twenty-nine hours after lesion induction most myelin sheaths are deteriorating and typical macroglia are no longer visible. Phagocytosis of myelin debris has begun. In 3-day lesions, axons are intact and their mitochondria and neurofibrils appear normal despite continued myelin breakdown. All axons are completely demyelinated by 6 days. They lack investments only briefly, however, for at 10 and 14 days, macroglial processes appear and embrace them. These macroglia do not resemble either one of the normally occurring glia; their dense cytoplasm contains fibrils in addition to the usual organelles. It is proposed that these macroglia, which later accomplish remyelination, are the hypertrophic or swollen astrocytes of classical neuropathology. The suggestion that these astrocytes possess the potential to remyelinate axons in addition to their known ability to form cicatrix raises the possibility of pharmacological control of their expression. PMID:13805917

Intradural extramedullary hemangiopericytoma of the thoracic spine infiltrating a nerve root: a case report and literature review.

PubMed

Moscovici, Samuel; Ramirez-DeNoriega, Fernando; Fellig, Yakov; Rosenthal, Guy; Cohen, José E; Itshayek, Eyal

2011-11-01

Review the presentation and diagnosis of an intradural extramedullary hemangiopericytoma of the thoracic spine. To present a rare case of intradural, subpial hemangiopericytoma in the thoracic spine, with a brief overview of the literature. Spinal intradural extramedullary hemangiopericytoma is rare entity that radiographically mimics nerve-sheath tumors. These lesions are typically diagnosed at surgery performed due to suspicion of tumor. A 20-year-old man who presented with back pain, leg weakness, and sphincter incontinence. MR imaging demonstrated an intradural extramedullary lesion at the T9-T10 level that was isointense on T1- and T2-weighted images and homogeneously enhancing after administration of gadolinium, with cystic components seen on T2-weighted images. The preoperative diagnosis was meningioma or schwannoma. At surgery, the lesion was bluish and completely subpial, with apparent nerve root invasion. Pathological examination revealed a neoplasm adjacent to a nerve root with possible focal infiltration. Abundant reticulin fibers and widened, branching vascular channels imparting a staghorn appearance were seen. Up to five mitotic figures were counted in one high-power field. On immunostaining, the neoplastic cells were diffusely immunoreactive for CD99 and immunonegative for EMA, CD34, and S-100 protein. The pathological diagnosis was consistent with anaplastic hemangiopericytoma, WHO grade III. This is the ninth report of spinal intradural hemangiopericytoma. The location of the neoplasm supports the hypothesis that hemangiopericytoma may arise from the spinal pial capillaries.

Evidence for a systemic regulation of neurotrophin synthesis in response to peripheral nerve injury.

PubMed

Shakhbazau, Antos; Martinez, Jose A; Xu, Qing-Gui; Kawasoe, Jean; van Minnen, Jan; Midha, Rajiv

2012-08-01

Up-regulation of neurotrophin synthesis is an important mechanism of peripheral nerve regeneration after injury. Neurotrophin expression is regulated by a complex series of events including cell interactions and multiple molecular stimuli. We have studied neurotrophin synthesis at 2 weeks time-point in a transvertebral model of unilateral or bilateral transection of sciatic nerve in rats. We have found that unilateral sciatic nerve transection results in the elevation of nerve growth factor (NGF) and NT-3, but not glial cell-line derived neurotrophic factor or brain-derived neural factor, in the uninjured nerve on the contralateral side, commonly considered as a control. Bilateral transection further increased NGF but not other neurotrophins in the nerve segment distal to the transection site, as compared to the unilateral injury. To further investigate the distinct role of NGF in regeneration and its potential for peripheral nerve repair, we transduced isogeneic Schwann cells with NGF-encoding lentivirus and transplanted the over-expressing cells into the distal segment of a transected nerve. Axonal regeneration was studied at 2 weeks time-point using pan-neuronal marker NF-200 and found to directly correlate with NGF levels in the regenerating nerve. © 2012 The Authors. Journal of Neurochemistry © 2012 International Society for Neurochemistry.

Dynamic enhancement MRI of anterior lobe in pituitary dwarfism.

PubMed

Liu, H M; Li, Y W; Tsai, W Y; Su, C T

1995-08-01

We examined 23 patients with pituitary dwarfism by dynamic MRI; with a repetition time of 150 or 50 ms. The time-enhancement difference curves of selected regions in the anterior lobes were plotted. Another 48 patients with no definite clinical pituitary disfunction were examined with the same technique. We found that the intensity of maximum enhancement in both groups was similar, but the time to achieve maximum enhancement was delayed in pituitary dwarfism with or without stalk transection; the time seemed longest with stalk transection. There was little difference in enhancement between patients with multiple hormone deficiency or isolated growth hormone deficiency. Dynamic MRI of the anterior lobes may be an important functional imaging study, and our results imply that poor perfusion is a useful finding in pituitary dwarfism, especially in patients without stalk transection and normal pituitary height.

Enhancing fish Underwater Visual Census to move forward assessment of fish assemblages: An application in three Mediterranean Marine Protected Areas

PubMed Central

Thiriet, Pierre; Di Franco, Antonio; Francour, Patrice

2017-01-01

Monitoring fish assemblages is needed to assess whether Marine Protected Areas (MPAs) are meeting their conservation and fisheries management goals, as it allows one to track the progress of recovery of exploited species and associated communities. Underwater Visual Census techniques (UVC) are used to monitor fish assemblages in MPAs. UVCs should be adapted to fish abundance, body-size and behaviour, which can strongly affect fish detectability. In Mediterranean subtidal habitats, however, UVC strip transects of one surface area (25x5 m2) are commonly used to survey the whole fish assemblage, from large shy fish to small crypto-benthic fish. Most high trophic level predators (HTLPs) are large shy fish which rarely swim close to divers and, consequently, their abundance may be under-estimated with commonly used transects. Here, we propose an improvement to traditional transect surveys to better account for differences in behaviour among and within species. First, we compared the effectiveness of combining two transect surface areas (large: 35x20 m2; medium: 25x5 m2) in quantifying large, shy fish within and outside Mediterranean MPAs. We identified species-specific body-size thresholds defining a smaller and a larger size class better sampled by medium and large transects respectively. Combining large and medium transects provided more accurate biomass and species richness estimates for large, shy species than using medium transects alone. We thus combined the new approach with two other transect surface areas commonly used to survey crypto-benthic (10x1 m2) and necto-benthic (25x5 m2) species in order to assess how effectively MPAs protection the whole fish assemblage. We verified that MPAs offer significant protection for HTLPs, their response in terms of biomass and density increase in MPAs was always higher in magnitude than other functional groups. Inside MPAs, the contribution of HTLP reached >25% of total fish biomass, against < 2% outside MPAs. Surveys with multiple transect surface areas allow for a more realistic assessment of the structure of the whole fish assemblage and better assessment of potential recovery of HTLPs within reserves of HTLP. PMID:28594836

Enhancing fish Underwater Visual Census to move forward assessment of fish assemblages: An application in three Mediterranean Marine Protected Areas.

PubMed

Prato, Giulia; Thiriet, Pierre; Di Franco, Antonio; Francour, Patrice

2017-01-01

Monitoring fish assemblages is needed to assess whether Marine Protected Areas (MPAs) are meeting their conservation and fisheries management goals, as it allows one to track the progress of recovery of exploited species and associated communities. Underwater Visual Census techniques (UVC) are used to monitor fish assemblages in MPAs. UVCs should be adapted to fish abundance, body-size and behaviour, which can strongly affect fish detectability. In Mediterranean subtidal habitats, however, UVC strip transects of one surface area (25x5 m2) are commonly used to survey the whole fish assemblage, from large shy fish to small crypto-benthic fish. Most high trophic level predators (HTLPs) are large shy fish which rarely swim close to divers and, consequently, their abundance may be under-estimated with commonly used transects. Here, we propose an improvement to traditional transect surveys to better account for differences in behaviour among and within species. First, we compared the effectiveness of combining two transect surface areas (large: 35x20 m2; medium: 25x5 m2) in quantifying large, shy fish within and outside Mediterranean MPAs. We identified species-specific body-size thresholds defining a smaller and a larger size class better sampled by medium and large transects respectively. Combining large and medium transects provided more accurate biomass and species richness estimates for large, shy species than using medium transects alone. We thus combined the new approach with two other transect surface areas commonly used to survey crypto-benthic (10x1 m2) and necto-benthic (25x5 m2) species in order to assess how effectively MPAs protection the whole fish assemblage. We verified that MPAs offer significant protection for HTLPs, their response in terms of biomass and density increase in MPAs was always higher in magnitude than other functional groups. Inside MPAs, the contribution of HTLP reached >25% of total fish biomass, against < 2% outside MPAs. Surveys with multiple transect surface areas allow for a more realistic assessment of the structure of the whole fish assemblage and better assessment of potential recovery of HTLPs within reserves of HTLP.

Measurement of amino acid levels in the vitreous humor of rats after chronic intraocular pressure elevation or optic nerve transection.

PubMed

Levkovitch-Verbin, Hana; Martin, Keith R G; Quigley, Harry A; Baumrind, Lisa A; Pease, Mary Ellen; Valenta, Danielle

2002-10-01

To investigate whether the levels of free amino acids and protein in the vitreous of rat eyes are altered with chronic intraocular pressure (IOP) elevation or after optic nerve transection. The concentrations of 20 amino acids in the vitreous humor were measured by high-performance liquid chromatography in both eyes of 41 rats with unilateral IOP elevation induced by translimbal photocoagulation. Eyes were studied 1 day and 1, 2, 4, and 9 weeks after initial IOP elevation. The same amino acids were measured in 41 rats 1 day and 2, 4, and 9 weeks after unilateral transection of the orbital optic nerve. The intravitreal protein level was assayed in additional 22 rats with IOP elevation and 12 rats after nerve transection. Two masked observers evaluated the amount of optic nerve damage with a semiquantitative, light-microscopic technique. In rats with experimental glaucoma, amino acid concentrations were unchanged 1 day after treatment. At 1 week, 4 of 20 amino acids (aspartate, proline, alanine, and lysine) were higher than in control eyes ( < or = 0.01), but this difference was nonsignificant after Bonferroni correction for multiple simultaneous amino acid comparisons (none achieved < 0.0025). No amino acid was significantly different from control in the nerve transection groups (all > 0.05). Vitreous protein level was significantly higher in glaucomatous eyes than their paired controls at 1 day ( < 0.0001) and 1 week ( < 0.002). One day and 1 week after optic nerve transection, vitreal proteins were significantly elevated compared with control eyes from untreated animals ( < 0.0020 and < 0.0022, respectively), though not compared with their fellow eyes ( = 0.25 and 0.10). Chronic experimental glaucoma and transection of the optic nerve increase the amount of protein in the rat vitreous above control levels. In the vitreous of rats with experimental glaucoma, a number of free amino acids were transiently elevated to a modest degree, but no significant difference in vitreous glutamate concentration was detected ( > 0.01).

Endovascular repair of thoracic aortic traumatic transections is a safe method in patients with complicated injuries.

PubMed

Rahimi, Saum A; Darling, R Clement; Mehta, Manish; Roddy, Sean P; Taggert, John B; Sternbach, Yaron

2010-10-01

Historically thoracic aortic rupture secondary to trauma was treated with cardiopulmonary bypass and open surgery. With the advent of endovascular grafting, physicians have the ability to reconstruct the thoracic aortic transection using a less invasive technique. In this study, we examine our experience with stent graft repair of thoracic transections secondary to trauma. The medical records of patients treated at a level I trauma center from 2005 to 2008 were reviewed. Those patients who had an aortic transection treated with an endograft were identified and evaluated for in-hospital mortality and morbidity and concurrent injuries. Demographics, procedural details, and outcomes were analyzed. Over a 3-year period, 18 thoracic aortic transections secondary to trauma were identified in patients with a mean age of 43 (range, 16-80). Primary technical success was 100%. None of the patients required explant or open repair during this time period. In-hospital mortality was 2 of 18 (11%); all patients had multiple trauma including long bone fractures. The subclavian artery origin was covered by the stent graft in 9 of the 18 patients. The mean estimated blood loss per procedure was 222 cc. No patient in this series had postoperative paraplegia. Follow-up ranged from 1 to 50 months with an average of 13 months. There have been no late explantation or device failures identified. Endovascular repair of traumatic thoracic aortic transections can be performed safely with a relatively low mortality and morbidity and should be the procedure of choice for patients presenting with traumatic thoracic aortic ruptures. Copyright © 2010 Society for Vascular Surgery. Published by Mosby, Inc. All rights reserved.

Bilateral Traumatic Globe Luxation with Optic Nerve Transection

PubMed Central

Tok, Levent; Tok, Ozlem Yalcin; Argun, Tugba Cakmak; Yilmaz, Omer; Gunes, Alime; Unlu, Elif Nisa; Sezer, Sezgin; Ibisoglu, Seda; Argun, Mehmet

2014-01-01

Purpose The purpose of this study was to document clinical findings and management of a patient with bilateral globe luxation and optic nerve transection. Materials and Methods A 25-year-old female patient was admitted to the emergency department with bilateral traumatic globe luxation following a motor vehicle accident. Results Visual acuity testing showed no light perception. The right pupil was dilated and bilaterally did not react to light. The globes were bilaterally intact. A computed tomography scan revealed Le Fort type II fractures, bilateral optic nerve transection and disruption of all extraocular muscles. The globes of the patient were bilaterally reduced into the orbit. However, the patient developed phthisis bulbi in the right eye at month 3. Conclusion Globe luxation presents a dramatic clinical picture, and may lead to the development of severe complications due to the concomitance of complete optic nerve dissection and multiple traumas. Even if the luxated globe is repositioned into the orbit, there is still an increased risk of the development of phthisis due to ischemia. PMID:25606034

Field data sets for seagrass biophysical properties for the Eastern Banks, Moreton Bay, Australia, 2004-2014

NASA Astrophysics Data System (ADS)

Roelfsema, Chris M.; Kovacs, Eva M.; Phinn, Stuart R.

2015-08-01

This paper describes seagrass species and percentage cover point-based field data sets derived from georeferenced photo transects. Annually or biannually over a ten year period (2004-2014) data sets were collected using 30-50 transects, 500-800 m in length distributed across a 142 km2 shallow, clear water seagrass habitat, the Eastern Banks, Moreton Bay, Australia. Each of the eight data sets include seagrass property information derived from approximately 3000 georeferenced, downward looking photographs captured at 2-4 m intervals along the transects. Photographs were manually interpreted to estimate seagrass species composition and percentage cover (Coral Point Count excel; CPCe). Understanding seagrass biology, ecology and dynamics for scientific and management purposes requires point-based data on species composition and cover. This data set, and the methods used to derive it are a globally unique example for seagrass ecological applications. It provides the basis for multiple further studies at this site, regional to global comparative studies, and, for the design of similar monitoring programs elsewhere.

Temporal and Spatial Wildfire Dynamics of Northern Siberia: Larch Forests and Insect Outbreak Areas

NASA Astrophysics Data System (ADS)

Kharuk, Viacheslav; Antamoshkina, Olga; Ponomarev, Eugene

2017-04-01

Wildfire number and burned area temporal dynamics within all of Siberia and along a south-north transect in central Siberia (45 - 73°N) were studied based on NOAA/AVHRR and Terra/MODIS data and field measurements for the period since 1996. In addition, fire return interval along the south-north transect was analyzed. Third, pest outbreak (Siberian silkmoth) impact on the wildfires was studied. Both, number of forest fires and burned area in Siberia increased during recent decades. Significant correlations were found between forest fires, burned areas and air temperature (r = 0.5) and drought index (SPEI) (r = -0.43). Within larch stands along the transect wildfire frequency was strongly correlated with incoming solar radiation (r = 0.91). Fire danger period length decreased linearly from south to north along the transect. Fire return interval increased from 80 years at 62°N to 200 years at the Arctic Circle (66°33'N), and to about 300 years near the northern limit of closed forest stands ( 71+°N). That increase was negatively correlated with incoming solar radiation (r = -0.95). Siberian silkmoth outbreaks leads to an order of magnitude increase in burned area and fire frequency. Multiple fires turns former "dark needle conifer" taiga into grass and bush communities for decades.

Assessment of imperfect detection of blister rust in whitebark pine within the Greater Yellowstone Ecosystem

USGS Publications Warehouse

Wright, Wilson J.; Irvine, Kathryn M.

2017-01-01

We examined data on white pine blister rust (blister rust) collected during the monitoring of whitebark pine trees in the Greater Yellowstone Ecosystem (from 2004-2015). Summaries of repeat observations performed by multiple independent observers are reviewed and discussed. These summaries show variability among observers and the potential for errors being made in blister rust status. Based on this assessment, we utilized occupancy models to analyze blister rust prevalence while explicitly accounting for imperfect detection. Available covariates were used to model both the probability of a tree being infected with blister rust and the probability of an observer detecting the infection. The fitted model provided strong evidence that the probability of blister rust infection increases as tree diameter increases and decreases as site elevation increases. Most importantly, we found evidence of heterogeneity in detection probabilities related to tree size and average slope of a transect. These results suggested that detecting the presence of blister rust was more difficult in larger trees. Also, there was evidence that blister rust was easier to detect on transects located on steeper slopes. Our model accounted for potential impacts of observer experience on blister rust detection probabilities and also showed moderate variability among the different observers in their ability to detect blister rust. Based on these model results, we suggest that multiple observer sampling continue in future field seasons in order to allow blister rust prevalence estimates to be corrected for imperfect detection. We suggest that the multiple observer effort be spread out across many transects (instead of concentrated at a few each field season) while retaining the overall proportion of trees with multiple observers around 5-20%. Estimates of prevalence are confounded with detection unless it is explicitly accounted for in an analysis and we demonstrate how an occupancy model can be used to do account for this source of observation error.

Effectiveness of backpack electrofishing for removal of non-native fishes from a small warm-water stream

USGS Publications Warehouse

Ward, David L.; O'neill, Matthew W.; Ka'apu-Lyons, Cassie

2015-01-01

Electrofishing is commonly used when renovating small streams to remove nuisance fishes but the likelihood of complete eradication of unwanted species, particularly warm-water fishes, is unknown. In October of 2008, we electrofished Bonita Creek, a small stream with base flows (<0.56 m3/s) in southern Arizona, and then treated the stream with rotenone to kill all of the remaining fish and quantify the effectiveness of single and multiple-pass electro fishing. Six, 100-m transects were electro fished on three consecutive days followed by a single treatment with rotenone. Fish caught using electrofishing were identified, counted and removed from each transect daily and then compared to numbers of dead fish collected during the subsequent rotenone application. Electrofishing effectiveness was highly variable among transects. Single-pass electrofishing caught an average of 23% (95% CI=5 to 40%) of the fish present, and three-pass electrofishing on consecutive days caught on average 55% (95% CI=28 to 83%) of the fish in each transect. Native Arizona fishes were more susceptible to electrofishing (77 % captured) than non-native species (54% captured), though native fish were rare. Transects in Bonita Creek averaged 3.6±1.5 m wide and 0.25±0.20 m deep (max depth 1.2 m). Bonita Creek is a small first-order stream which exhibits ideal conditions for backpack electrofishing, yet we captured a relatively small percentage of the fish present. This suggests that complete removal of non-native warm-water fishes using backpack electrofishing is not likely to be successful, especially in larger more complex streams.

Extensive grey matter pathology in the cerebellum in multiple sclerosis is linked to inflammation in the subarachnoid space.

PubMed

Howell, Owain W; Schulz-Trieglaff, Elena Katharina; Carassiti, Daniele; Gentleman, Steven M; Nicholas, Richard; Roncaroli, Federico; Reynolds, Richard

2015-10-01

Multiple sclerosis (MS) is a progressive inflammatory neurological disease affecting myelin, neurons and glia. Demyelination and neurodegeneration of cortical grey matter contribute to a more severe disease, and inflammation of the forebrain meninges associates with pathology of the underlying neocortical grey matter, particularly in deep sulci. We assessed the extent of meningeal inflammation of the cerebellum, another structure with a deeply folded anatomy, to better understand the association between subarachnoid inflammation and grey matter pathology in progressive MS. We examined demyelinating and neuronal pathology in the context of meningeal inflammation in cerebellar tissue blocks from a cohort of 27 progressive MS cases previously characterized on the basis of the absence/presence of lymphoid-like aggregates in the forebrain meninges, in comparison with 11 non-neurological controls. Demyelination and meningeal inflammation of the cerebellum was greatest in those cases previously characterized as harbouring lymphoid-like structures in the forebrain regions. Meningeal inflammation was mild to moderate in cerebellar tissue blocks, and no lymphoid-like structures were seen. Quantification of meningeal macrophages, CD4+, CD8+ T lymphocytes, B cells and plasma cells revealed that the density of meningeal macrophages associated with microglial activation in the grey matter, and the extent of grey matter demyelination correlated with the density of macrophages and plasma cells in the overlying meninges, and activated microglia of the parenchyma. These data suggest that chronic inflammation is widespread throughout the subarachnoid space and contributes to a more severe subpial demyelinating pathology in the cerebellum. © 2014 British Neuropathological Society.

Strong latitudinal and vertical biogeography of Synechococcus diversity in the equatorial Pacific Ocean

NASA Astrophysics Data System (ADS)

Martiny, A.; Kent, A. G.; Mouginot, C.; Baer, S. E.; Lomas, M. W.

2016-02-01

Extensive genetic diversity has been observed within Synechococcus including the presence of multiple major clades. However, the biogeography and underlying environmental drivers of these clades remain elusive. Here, we developed a new high-throughput sequencing assay using rpoC1 as marker combined with Illumina sequencing. Using this, we identified the genetic diversity of Synechococcus from 200 samples in an eastern Pacific Ocean transect between 19˚N and 3˚S. We used a placement method to identify the phylogenetic affiliation of each sequence and detected extensive diversity including multiple previously undescribed clades. We observed clear biogeographical domains, with Clade 2 dominant in the northern part of the transect, Clade CRD peaking at the equator, and Clade 1 dominant deeper in the water column throughout the transect. This biogeography, along with physical and nutrient data, suggests that Clade 2 represents a high temperature, low macronutrient ecotype, CRD a high temperature but low iron ecotype, and at least part of Clade 1 a low-light ecotype. The shift between Clade 2 and CRD occurred at 7˚N, whereas the concentration of macronutrients was low down to 4˚N, before increasing. This biogeography indicates that Synechococcus cells experience iron stress up to 7˚N despite low concentrations of phosphate and nitrate. The overall biogeography closely matched the distribution of Prochlorococcus diversity in this region, suggesting a parallel evolution of ecotypes in these two major lineages of marine Cyanobacteria.

Modeling abundance using hierarchical distance sampling

USGS Publications Warehouse

Royle, Andy; Kery, Marc

2016-01-01

In this chapter, we provide an introduction to classical distance sampling ideas for point and line transect data, and for continuous and binned distance data. We introduce the conditional and the full likelihood, and we discuss Bayesian analysis of these models in BUGS using the idea of data augmentation, which we discussed in Chapter 7. We then extend the basic ideas to the problem of hierarchical distance sampling (HDS), where we have multiple point or transect sample units in space (or possibly in time). The benefit of HDS in practice is that it allows us to directly model spatial variation in population size among these sample units. This is a preeminent concern of most field studies that use distance sampling methods, but it is not a problem that has received much attention in the literature. We show how to analyze HDS models in both the unmarked package and in the BUGS language for point and line transects, and for continuous and binned distance data. We provide a case study of HDS applied to a survey of the island scrub-jay on Santa Cruz Island, California.

Trident sign trumps Aquaporin-4-IgG ELISA in diagnostic value in a case of longitudinally extensive transverse myelitis.

PubMed

Jolliffe, Evan A; Keegan, B Mark; Flanagan, Eoin P

2018-04-21

Longitudinally-extensive T2-hyperintense spinal cord lesions (≥3 vertebral segments) are associated with neuromyelitis optical spectrum disorder but occur with other disorders including spinal cord sarcoidosis. When linear dorsal subpial enhancement is accompanied by central cord/canal enhancement the axial post-gadolinium sequences may reveal a "trident" pattern that has previously been shown to be strongly suggestive of spinal cord sarcoidosis. We report a case in which the patient was initially diagnosed with neuromyelitis optical spectrum disorder, but where the "trident" sign ultimately led to the correct diagnosis of spinal cord sarcoidosis. Copyright © 2018. Published by Elsevier B.V.

Do sampling methods differ in their utility for ecological monitoring? Comparison of line-point intercept, grid-point intercept, and ocular estimate methods

USDA-ARS?s Scientific Manuscript database

This study compared the utility of three sampling methods for ecological monitoring based on: interchangeability of data (rank correlations), precision (coefficient of variation), cost (minutes/transect), and potential of each method to generate multiple indicators. Species richness and foliar cover...

Line Intercept (LI)

Treesearch

John F. Caratti

2006-01-01

The FIREMON Line Intercept (LI) method is used to assess changes in plant species cover for a macroplot. This method uses multiple line transects to sample within plot variation and quantify statistically valid changes in plant species cover and height over time. This method is suited for most forest and rangeland communities, but is especially useful for sampling...

Early changes in muscle atrophy and muscle fiber type conversion after spinal cord transection and peripheral nerve transection in rats.

PubMed

Higashino, Kosaku; Matsuura, Tetsuya; Suganuma, Katsuyoshi; Yukata, Kiminori; Nishisho, Toshihiko; Yasui, Natsuo

2013-05-20

Spinal cord transection and peripheral nerve transection cause muscle atrophy and muscle fiber type conversion. It is still unknown how spinal cord transection and peripheral nerve transection each affect the differentiation of muscle fiber type conversion mechanism and muscle atrophy. The aim of our study was to evaluate the difference of muscle weight change, muscle fiber type conversion, and Peroxisome proliferator-activated receptor-γ coactivatior-1α (PGC-1α) expression brought about by spinal cord transection and by peripheral nerve transection. Twenty-four Wistar rats underwent surgery, the control rats underwent a laminectomy; the spinal cord injury group underwent a spinal cord transection; the denervation group underwent a sciatic nerve transection. The rats were harvested of the soleus muscle and the TA muscle at 0 week, 1 week and 2 weeks after surgery. Histological examination was assessed using hematoxylin and eosin (H&E) staining and immunofluorescent staing. Western blot was performed with 3 groups. Both sciatic nerve transection and spinal cord transection caused muscle atrophy with the effect being more severe after sciatic nerve transection. Spinal cord transection caused a reduction in the expression of both sMHC protein and PGC-1α protein in the soleus muscle. On the other hand, sciatic nerve transection produced an increase in expression of sMHC protein and PGC-1α protein in the soleus muscle. The results of the expression of PGC-1α were expected in other words muscle atrophy after sciatic nerve transection is less than after spinal cord transection, however muscle atrophy after sciatic nerve transection was more severe than after spinal cord transection. In the conclusion, spinal cord transection diminished the expression of sMHC protein and PGC-1α protein in the soleus muscle. On the other hand, sciatic nerve transection enhanced the expression of sMHC protein and PGC-1α protein in the soleus muscle.

Hierarchical drivers of reef-fish metacommunity structure.

PubMed

MacNeil, M Aaron; Graham, Nicholas A J; Polunin, Nicholas V C; Kulbicki, Michel; Galzin, René; Harmelin-Vivien, Mireille; Rushton, Steven P

2009-01-01

Coral reefs are highly complex ecological systems, where multiple processes interact across scales in space and time to create assemblages of exceptionally high biodiversity. Despite the increasing frequency of hierarchically structured sampling programs used in coral-reef science, little progress has been made in quantifying the relative importance of processes operating across multiple scales. The vast majority of reef studies are conducted, or at least analyzed, at a single spatial scale, ignoring the implicitly hierarchical structure of the overall system in favor of small-scale experiments or large-scale observations. Here we demonstrate how alpha (mean local number of species), beta diversity (degree of species dissimilarity among local sites), and gamma diversity (overall species richness) vary with spatial scale, and using a hierarchical, information-theoretic approach, we evaluate the relative importance of site-, reef-, and atoll-level processes driving the fish metacommunity structure among 10 atolls in French Polynesia. Process-based models, representing well-established hypotheses about drivers of reef-fish community structure, were assembled into a candidate set of 12 hierarchical linear models. Variation in fish abundance, biomass, and species richness were unevenly distributed among transect, reef, and atoll levels, establishing the relative contribution of variation at these spatial scales to the structure of the metacommunity. Reef-fish biomass, species richness, and the abundance of most functional-groups corresponded primarily with transect-level habitat diversity and atoll-lagoon size, whereas detritivore and grazer abundances were largely correlated with potential covariates of larval dispersal. Our findings show that (1) within-transect and among-atoll factors primarily drive the relationship between alpha and gamma diversity in this reef-fish metacommunity; (2) habitat is the primary correlate with reef-fish metacommunity structure at multiple spatial scales; and (3) inter-atoll connectedness was poorly correlated with the nonrandom clustering of reef-fish species. These results demonstrate the importance of modeling hierarchical data and processes in understanding reef-fish metacommunity structure.

3-D flow and scour near a submerged wing dike: ADCP measurements on the Missouri River

USGS Publications Warehouse

Jamieson, E.C.; Rennie, C.D.; Jacobson, R.B.; Townsend, R.D.

2011-01-01

Detailed mapping of bathymetry and three-dimensional water velocities using a boat-mounted single-beam sonar and acoustic Doppler current profiler (ADCP) was carried out in the vicinity of two submerged wing dikes located in the Lower Missouri River near Columbia, Missouri. During high spring flows the wing dikes become submerged, creating a unique combination of vertical flow separation and overtopping (plunging) flow conditions, causing large-scale three-dimensional turbulent flow structures to form. On three different days and for a range of discharges, sampling transects at 5 and 20 m spacing were completed, covering the area adjacent to and upstream and downstream from two different wing dikes. The objectives of this research are to evaluate whether an ADCP can identify and measure large-scale flow features such as recirculating flow and vortex shedding that develop in the vicinity of a submerged wing dike; and whether or not moving-boat (single-transect) data are sufficient for resolving complex three-dimensional flow fields. Results indicate that spatial averaging from multiple nearby single transects may be more representative of an inherently complex (temporally and spatially variable) three-dimensional flow field than repeated single transects. Results also indicate a correspondence between the location of calculated vortex cores (resolved from the interpolated three-dimensional flow field) and the nearby scour holes, providing new insight into the connections between vertically oriented coherent structures and local scour, with the unique perspective of flow and morphology in a large river.

4.7-T diffusion tensor imaging of acute traumatic peripheral nerve injury

PubMed Central

Boyer, Richard B.; Kelm, Nathaniel D.; Riley, D. Colton; Sexton, Kevin W.; Pollins, Alonda C.; Shack, R. Bruce; Dortch, Richard D.; Nanney, Lillian B.; Does, Mark D.; Thayer, Wesley P.

2015-01-01

Diagnosis and management of peripheral nerve injury is complicated by the inability to assess microstructural features of injured nerve fibers via clinical examination and electrophysiology. Diffusion tensor imaging (DTI) has been shown to accurately detect nerve injury and regeneration in crush models of peripheral nerve injury, but no prior studies have been conducted on nerve transection, a surgical emergency that can lead to permanent weakness or paralysis. Acute sciatic nerve injuries were performed microsurgically to produce multiple grades of nerve transection in rats that were harvested 1 hour after surgery. High-resolution diffusion tensor images from ex vivo sciatic nerves were obtained using diffusion-weighted spin-echo acquisitions at 4.7 T. Fractional anisotropy was significantly reduced at the injury sites of transected rats compared with sham rats. Additionally, minor eigenvalues and radial diffusivity were profoundly elevated at all injury sites and were negatively correlated to the degree of injury. Diffusion tensor tractography showed discontinuities at all injury sites and significantly reduced continuous tract counts. These findings demonstrate that high-resolution DTI is a promising tool for acute diagnosis and grading of traumatic peripheral nerve injuries. PMID:26323827

Measuring Taylor Slough boundary and internal flows, Everglades National Park, Florida

USGS Publications Warehouse

Tillis, G.M.

2001-01-01

Four intensive data-collection efforts, intended to represent the spectrum of precipitation events and associated flow conditions, were conducted during 1997 and 1998 in the Taylor Slough Basin, Everglades National Park. Flow velocities were measured by newly developed, portable Acoustic Doppler Velocity meters along three transects bisecting the Taylor Slough Basin from east to west, roughly perpendicular to the centerline axis of the slough as well as a fourth transect along the slough's axis. These meters provided the required levels of accuracy in flow-velocity measurements while enabling the rapid collection of multiple time series of flow data at remote sites. Concurrently, flow measurements were made along bordering road culverts and under L-31W and Taylor Slough bridges. Flows across the study area's boundaries provided net flow of water into the system and transect measurements provided flow data within the basin. Collected data are available through the World Wide Web (http://sofia.usgs.gov/projects/flow_velocity/). The high-water and low-water events corresponded with the highest and lowest flow velocities, respectively. The July 1998 data had lower than expected flow velocities and, in some cases, strong winds reversed flow direction.

The variable genomic architecture of isolation between hybridizing species of house mice.

PubMed

Teeter, Katherine C; Thibodeau, Lisa M; Gompert, Zachariah; Buerkle, C Alex; Nachman, Michael W; Tucker, Priscilla K

2010-02-01

Studies of the genetics of hybrid zones can provide insight into the genomic architecture of species boundaries. By examining patterns of introgression of multiple loci across a hybrid zone, it may be possible to identify regions of the genome that have experienced selection. Here, we present a comparison of introgression in two replicate transects through the house mouse hybrid zone through central Europe, using data from 41 single nucleotide markers. Using both genomic and geographic clines, we found many differences in patterns of introgression between the two transects, as well as some similarities. We found that many loci may have experienced the effects of selection at linked sites, including selection against hybrid genotypes, as well as positive selection in the form of genotypes introgressed into a foreign genetic background. We also found many positive associations of conspecific alleles among unlinked markers, which could be caused by epistatic interactions. Different patterns of introgression in the two transects highlight the challenge of using hybrid zones to identify genes underlying isolation and raise the possibility that the genetic basis of isolation between these species may be dependent on the local population genetic make-up or the local ecological setting.

Daily light use efficiency in a cornfield can be related to the canopy red/far-red fluorescence ratio and leaf light use efficiency across a growing season

USDA-ARS?s Scientific Manuscript database

In multiple years (2008-2013), we collected canopy and leaf fluorescence, photosynthesis, hyperspectral reflectance spectra, and biophysical measurements along transects within a USDA/Beltsville experimental cornfield treated with optimal nitrogen application (100%N) and which has an eddy covariance...

Image analysis of anatomical traits in stalk transections of maize and other grasses

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heckwolf, Sven; Heckwolf, Marlies; Kaeppler, Shawn M.

Grass stalks architecturally support leaves and reproductive structures, functionally support the transport of water and nutrients, and are harvested for multiple agricultural uses. Research on these basic and applied aspects of grass stalks would benefit from improved capabilities for measuring internal anatomical features. In particular, methods suitable for phenotyping populations of plants are needed.

Image analysis of anatomical traits in stalk transections of maize and other grasses

DOE PAGES

Heckwolf, Sven; Heckwolf, Marlies; Kaeppler, Shawn M.; ...

2015-04-09

Grass stalks architecturally support leaves and reproductive structures, functionally support the transport of water and nutrients, and are harvested for multiple agricultural uses. Research on these basic and applied aspects of grass stalks would benefit from improved capabilities for measuring internal anatomical features. In particular, methods suitable for phenotyping populations of plants are needed.

Cerebral distribution of immunoconjugate after treatment for neoplastic meningitis using an intrathecal radiolabeled monoclonal antibody

DOE Office of Scientific and Technical Information (OSTI.GOV)

Benjamin, J.C.; Moss, T.; Moseley, R.P.

1989-08-01

A detailed autopsy and autoradiographic study was performed after the death of a patient undergoing intrathecal, antibody-guided irradiation for carcinomatous meningitis. The results demonstrated tumor cells infiltrating the surface meninges and a severe astrocytic reaction associated with oedema in the periventricular and brain stem subpial white matter. This was not seen in cortical or other gray matter structures. Autoradiographic examination correlated well, demonstrating isotope within the oedematous areas of the white matter in addition to the expected concentration in the leptomeningeal layers. These findings are discussed in the context of antibody binding to tumor tissue and the possible benefits conferredmore » in the treatment of infiltrating tumor cells.« less

In vivo imaging of cortical pathology in multiple sclerosis using ultra-high field MRI

PubMed Central

Mainero, C; Benner, T; Radding, A; van der Kouwe, A; Jensen, R; Rosen, B R.; Kinkel, R P.

2009-01-01

Objective: We used ultra-high field MRI to visualize cortical lesion types described by neuropathology in 16 patients with multiple sclerosis (MS) compared with 8 age-matched controls; to characterize the contrast properties of cortical lesions including T2*, T2, T1, and phase images; and to investigate the relationship between cortical lesion types and clinical data. Methods: We collected, on a 7-T scanner, 2-dimensional fast low-angle shot (FLASH)-T2*-weighted spoiled gradient-echo, T2-weighted turbo spin-echo (TSE) images (0.33 × 033 × 1 mm3), and a 3-dimensional magnetization-prepared rapid gradient echo. Results: Overall, 199 cortical lesions were detected in patients on both FLASH-T2* and T2-TSE scans. Seven-tesla MRI allowed for characterization of cortical plaques into type I (leukocortical), type II (intracortical), and type III/IV (subpial extending partly or completely through the cortical width) lesions as described histopathologically. Types III and IV were the most frequent type of cortical plaques (50.2%), followed by type I (36.2%) and type II (13.6%) lesions. Each lesion type was more frequent in secondary progressive than in relapsing–remitting MS. This difference, however, was significant only for type III/IV lesions. T2*-weighted images showed the highest, while phase images showed the lowest, contrast-to-noise ratio for all cortical lesion types. In patients, the number of type III/IV lesions was associated with greater disability (p < 0.02 by Spearman test) and older age (p < 0.04 by Spearman test). Conclusions: Seven-tesla MRI detected different histologic cortical lesion types in our small multiple sclerosis (MS) sample, suggesting, if validated in a larger population, that it may prove a valuable tool to assess the contribution of cortical MS pathology to clinical disability. GLOSSARY ANOVA = analysis of variance; BN = background noise; CNR = contrast-to-noise ratio; DIR = double-inversion recovery; EDSS = Expanded Disability Status Scale; FLAIR = fluid-attenuated inversion recovery; FLASH = fast low-angle shot; GM = gray matter; MPRAGE = magnetization-prepared rapid gradient echo; MR = magnetic resonance; MS = multiple sclerosis; NACGM = normal-appearing cortical gray matter; RF = radiofrequency; ROI = region of interest; RRMS = relapsing–remitting multiple sclerosis; SNR = signal-to-noise ratio; SPMS = secondary progressive multiple sclerosis; TA = time of acquisition; TE = echo time; TR = repetition time; TSE = turbo spin-echo; WM = white matter. PMID:19641168

Location and description of transects for ecological studies in floodplain forests of the lower Suwannee River, Florida

USGS Publications Warehouse

Lewis, L.J.; Light, H.M.; Darst, M.R.

2001-01-01

Twelve transects were established in floodplain forests along the lower Suwannee River, Florida, as the principal data collection sites for a comprehensive study conducted by the U.S. Geological Survey and the Suwannee River Water Management District from 1996 to 2001. Data collected along the 12 transects included hydrologic conditions, land-surface elevations, soils, and vegetation of floodplain forests in relation to river flow. Transect locations are marked in the field with permanent markers at approximately 30 meter intervals. Detailed descriptions of the 12 transects and their locations are provided so that they can be used for future ecological studies. Descriptions of the transects include contact information necessary for access to the property on which the transects are located, maps showing transect locations and routes from the nearest city or major road, small scale maps of each transect showing marker locations, latitude and longitude of each marker, compass bearings of each transect line and graphs showing land-surface elevations of the transect with marker locations.

Relationships between reef fish communities and remotely sensed rugosity measurements in Biscayne National Park, Florida, USA

USGS Publications Warehouse

Kuffner, Ilsa B.; Brock, John C.; Grober-Dunsmore, Rikki; Bonito, Victor E.; Hickey, T. Donald; Wright, C. Wayne

2007-01-01

The realization that coral reef ecosystem management must occur across multiple spatial scales and habitat types has led scientists and resource managers to seek variables that are easily measured over large areas and correlate well with reef resources. Here we investigate the utility of new technology in airborne laser surveying (NASA Experimental Advanced Airborne Research Lidar (EAARL)) in assessing topographical complexity (rugosity) to predict reef fish community structure on shallow (n = 10–13 per reef). Rugosity at each station was assessed in situ by divers using the traditional chain-transect method (10-m scale), and remotely using the EAARL submarine topography data at multiple spatial scales (2, 5, and 10 m). The rugosity and biological datasets were analyzed together to elucidate the predictive power of EAARL rugosity in describing the variance in reef fish community variables and to assess the correlation between chain-transect and EAARL rugosity. EAARL rugosity was not well correlated with chain-transect rugosity, or with species richness of fishes (although statistically significant, the amount of variance explained by the model was very low). Variance in reef fish community attributes was better explained in reef-by-reef variability than by physical variables. However, once the reef-by-reef variability was taken into account in a two-way analysis of variance, the importance of rugosity could be seen on individual reefs. Fish species richness and abundance were statistically higher at high rugosity stations compared to medium and low rugosity stations, as predicted by prior ecological research. The EAARL shows promise as an important mapping tool for reef resource managers as they strive to inventory and protect coral reef resources.

Axon Regeneration in C. elegans

PubMed Central

Hammarlund, Marc; Jin, Yishi

2014-01-01

Single axon transection by laser surgery has made C. elegans a new model for axon regeneration. Multiple conserved molecular signaling modules have been discovered through powerful genetic screening. in vivo imaging with single cell and axon resolution has revealed unprecedented cellular dynamics in regenerating axons. Information from C. elegans has greatly expanded our knowledge of the molecular and cellular mechanisms of axon regeneration. PMID:24794753

Initial experience with a new articulating energy device for laparoscopic liver resection.

PubMed

Berber, Eren; Akyuz, Muhammet; Aucejo, Federico; Aliyev, Shamil; Aksoy, Erol; Birsen, Onur; Taskin, Eren

2014-03-01

Although significant advances have been made in laparoscopic liver resection (LLR), most techniques still rely on multiple energy devices and staplers, which increase operative costs. The aim of this study was to report the initial results of a new multifunctional energy device for hepatic parenchymal transection. Fourteen patients who underwent LLR using this new device were compared to 20 patients who had LLR using current laparoscopic techniques (CL). Data were collected prospectively. The groups were similar demographics and tumor type and size. Although the type of resection was similar between the groups, the parenchymal transection time was less in the Caiman group (32 ± 5 vs. 63 ± 4 min, respectively, p = 0.0001). The operative time was similar (194 ± 21 vs. 233 ± 16 min, respectively, p = 0.158). There was reduction of the number of advanced instrumentation used in the Caiman group, including the staplers. Estimated blood loss, size of surgical margin, and hospital stay were similar. There was no mortality, and morbidity was 7 % in the Caiman and 20 % in the CL group. This initial study shows that the new device is safe and efficient for LLR. Its main advantage is shortening of hepatic parenchymal transection time. This has implications for increasing efficiency and cost saving in LLR.

Pancreas-sparing duodenectomy for an obstructive adenocarcinoma of the duodenum

PubMed Central

Lam, D; Croome, KP; Hernandez-Alejandro, R

2012-01-01

A duodenal adenocarcinoma arising from the junction of the second and third portion of the duodenum, which was resected by pancreas-sparing duodenectomy, is reported. The completely obstructing tumour was circumferential and measured 6.5cm x 3.5cm x 1.0 cm. There was no evidence of pancreas invasion, nor any lymph node metastasis. Pancreas-sparing duodenectomy was performed, with dissection of the pancreaticoduodenal lymph nodes. The proximal duodenum was transected just distal to the ampula of Vater and jejunum was transected just distal to the ligament of Treitz. A hand-sewn side-to-side anastomosis for the duodenojejunostomy was performed. There were no postoperative complications. Pathology reported a duodenal adenocarcinoma resected with negative margins. Pancreaticoduodenectomy is the treatment of choice for a duodenal adenocarcinoma, however, pancreas-sparing duodenectomy may be a safe alternative for duodenal tumours not involving the 2nd portion, especially in elderly patients with multiple medical comorbidities. PMID:24960771

Pancreas-sparing duodenectomy for an obstructive adenocarcinoma of the duodenum.

PubMed

Lam, D; Croome, Kp; Hernandez-Alejandro, R

2012-08-01

A duodenal adenocarcinoma arising from the junction of the second and third portion of the duodenum, which was resected by pancreas-sparing duodenectomy, is reported. The completely obstructing tumour was circumferential and measured 6.5cm x 3.5cm x 1.0 cm. There was no evidence of pancreas invasion, nor any lymph node metastasis. Pancreas-sparing duodenectomy was performed, with dissection of the pancreaticoduodenal lymph nodes. The proximal duodenum was transected just distal to the ampula of Vater and jejunum was transected just distal to the ligament of Treitz. A hand-sewn side-to-side anastomosis for the duodenojejunostomy was performed. There were no postoperative complications. Pathology reported a duodenal adenocarcinoma resected with negative margins. Pancreaticoduodenectomy is the treatment of choice for a duodenal adenocarcinoma, however, pancreas-sparing duodenectomy may be a safe alternative for duodenal tumours not involving the 2(nd) portion, especially in elderly patients with multiple medical comorbidities. © JSCR.

Statistical Algorithms Accounting for Background Density in the Detection of UXO Target Areas at DoD Munitions Sites

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matzke, Brett D.; Wilson, John E.; Hathaway, J.

2008-02-12

Statistically defensible methods are presented for developing geophysical detector sampling plans and analyzing data for munitions response sites where unexploded ordnance (UXO) may exist. Detection methods for identifying areas of elevated anomaly density from background density are shown. Additionally, methods are described which aid in the choice of transect pattern and spacing to assure with degree of confidence that a target area (TA) of specific size, shape, and anomaly density will be identified using the detection methods. Methods for evaluating the sensitivity of designs to variation in certain parameters are also discussed. Methods presented have been incorporated into the Visualmore » Sample Plan (VSP) software (free at http://dqo.pnl.gov/vsp) and demonstrated at multiple sites in the United States. Application examples from actual transect designs and surveys from the previous two years are demonstrated.« less

Primary non-transecting bulbar urethroplasty long-term success rates are similar to transecting urethroplasty.

PubMed

Anderson, Kirk M; Blakely, Stephen A; O'Donnell, Colin I; Nikolavsky, Dmitriy; Flynn, Brian J

2017-01-01

To review the long-term outcomes of transecting versus non-transecting urethroplasty to repair bulbar urethral strictures. A retrospective review was conducted of 342 patients who underwent anterior urethroplasty performed by a single surgeon from 2003 to 2014. Patients were excluded from further analysis if there had been prior urethroplasty, stricture location outside the bulbous urethra, or age <18 years. In the transecting group, surgical techniques used included excision and primary anastomosis and augmented anastomotic urethroplasty. In the non-transecting group, surgical techniques used included non-transecting anastomotic urethroplasty and dorsal and/or ventral buccal grafting. The primary endpoint was stricture resolution in transecting vs. non-transecting bulbar urethroplasty. Success was defined as freedom from secondary procedures including dilation, urethrotomy, or repeat urethroplasty. One hundred and fifty-two patients met inclusion criteria. At a mean follow-up of 65 months (range: 10-138 months), stricture-free recurrence in the transecting and non-transecting groups was similar, 83% (n = 85/102) and 82% (n = 41/50), respectively (p = 0.84). Surgical technique (p = 0.91), stricture length (p = 0.8), and etiology (p = 0.6) did not affect stricture recurrence rate on multivariate analysis. There was no difference detected in time to stricture recurrence (p = 0.21). In this retrospective series, transecting and non-transecting primary bulbar urethroplasty resulted in similar long-term stricture resolution rate. Prospective studies are needed to determine what differences may present in outcomes related to sexual function and long-term success.

Characterization of bulbospongiosus muscle reflexes activated by urethral distension in male rats.

PubMed

Tanahashi, Masayuki; Karicheti, Venkateswarlu; Thor, Karl B; Marson, Lesley

2012-10-01

The urethrogenital reflex (UGR) is used as a surrogate model of the autonomic and somatic nerve and muscle activity that accompanies ejaculation. The UGR is evoked by distension of the urethra and activation of penile afferents. The current study compares two methods of elevating urethral intraluminal pressure in spinalized, anesthetized male Sprague-Dawley rats (n = 60). The first method, penile extension UGR, involves extracting the penis from the foreskin, so that urethral pressure rises due to a natural anatomical flexure in the penis. The second method, penile clamping UGR, involves penile extension UGR with the addition of clamping of the glans penis. Groups of animals were prepared that either received no additional treatment, surgical shams, or received bilateral nerve cuts (4 nerve cut groups): either the pudendal sensory nerve branch (SbPN), the pelvic nerves, the hypogastric nerves, or all three nerves. Penile clamping UGR was characterized by multiple bursts, monitored by electromyography (EMG) of the bulbospongiosus muscle (BSM) accompanied by elevations in urethral pressure. The penile clamping UGR activity declined across multiple trials and eventually resulted in only a single BSM burst, indicating desensitization. In contrast, the penile extension UGR, without penile clamping, evoked only a single BSM EMG burst that showed no desensitization. Thus, the UGR is composed of two BSM patterns: an initial single burst, termed urethrobulbospongiosus (UBS) reflex and a subsequent multiple bursting pattern (termed ejaculation-like response, ELR) that was only induced with penile clamping urethral occlusion. Transection of the SbPN eliminated the ELR in the penile clamping model, but the single UBS reflex remained in both the clamping and extension models. Pelvic nerve (PelN) transection increased the threshold for inducing BSM activation with both methods of occlusion but actually unmasked an ELR in the penile extension method. Hypogastric nerve (HgN) cuts did not significantly alter any parameter. Transection of all three nerves eliminated BSM activation completely. In conclusion, penile clamping occlusion recruits penile and urethral primary afferent fibers that are necessary for an ELR. Urethral distension without significant penile afferent activation recruits urethral primary afferent fibers carried in either the pelvic or pudendal nerve that are necessary for the single-burst UBS reflex.

Switching control of sympathetic activity from forebrain to hindbrain in chronic dehydration

PubMed Central

Colombari, Débora S A; Colombari, Eduardo; Freiria-Oliveira, Andre H; Antunes, Vagner R; Yao, Song T; Hindmarch, Charles; Ferguson, Alastair V; Fry, Mark; Murphy, David; Paton, Julian F R

2011-01-01

Abstract We investigated the mechanisms responsible for increased blood pressure and sympathetic nerve activity (SNA) caused by 2–3 days dehydration (DH) both in vivo and in situ preparations. In euhydrated (EH) rats, systemic application of the AT1 receptor antagonist Losartan and subsequent pre-collicular transection (to remove the hypothalamus) significantly reduced thoracic (t)SNA. In contrast, in DH rats, Losartan, followed by pre-collicular and pontine transections, failed to reduce tSNA, whereas transection at the medulla–spinal cord junction massively reduced tSNA. In DH but not EH rats, selective inhibition of the commissural nucleus tractus solitarii (cNTS) significantly reduced tSNA. Comparable data were obtained in both in situ and in vivo (anaesthetized/conscious) rats and suggest that following chronic dehydration, the control of tSNA transfers from supra-brainstem structures (e.g. hypothalamus) to the medulla oblongata, particularly the cNTS. As microarray analysis revealed up-regulation of AP1 transcription factor JunD in the dehydrated cNTS, we tested the hypothesis that AP1 transcription factor activity is responsible for dehydration-induced functional plasticity. When AP1 activity was blocked in the cNTS using a viral vector expressing a dominant negative FosB, cNTS inactivation was ineffective. However, tSNA was decreased after pre-collicular transection, a response similar to that seen in EH rats. Thus, the dehydration-induced switch in control of tSNA from hypothalamus to cNTS seems to be mediated via activation of AP1 transcription factors in the cNTS. If AP1 activity is blocked in the cNTS during dehydration, sympathetic activity control reverts back to forebrain regions. This unique reciprocating neural structure-switching plasticity between brain centres emphasizes the multiple mechanisms available for the adaptive response to dehydration. PMID:21708906

Changes in anthropogenic carbon storage in the Northeast Pacific in the last decade

NASA Astrophysics Data System (ADS)

Chu, Sophie N.; Wang, Zhaohui Aleck; Doney, Scott C.; Lawson, Gareth L.; Hoering, Katherine A.

2016-07-01

In order to understand the ocean's role as a sink for anthropogenic carbon dioxide (CO2), it is important to quantify changes in the amount of anthropogenic CO2 stored in the ocean interior over time. From August to September 2012, an ocean acidification cruise was conducted along a portion of the P17N transect (50°N 150°W to 33.5°N 135°W) in the Northeast Pacific. These measurements are compared with data from the previous occupation of this transect in 2001 to estimate the change in the anthropogenic CO2 inventory in the Northeast Pacific using an extended multiple linear regression (eMLR) approach. Maximum increases in the surface waters were 11 µmol kg-1 over 11 years near 50°N. Here, the penetration depth of anthropogenic CO2 only reached ˜300 m depth, whereas at 33.5°N, penetration depth reached ˜600 m. The average increase of the depth-integrated anthropogenic carbon inventory was 0.41 ± 0.12 mol m-2 yr-1 across the transect. Lower values down to 0.20 mol m-2 yr-1 were observed in the northern part of the transect near 50°N and increased up to 0.55 mol m-2 yr-1 toward 33.5°N. This increase in anthropogenic carbon in the upper ocean resulted in an average pH decrease of 0.002 ± 0.0003 pH units yr-1 and a 1.8 ± 0.4 m yr-1 shoaling rate of the aragonite saturation horizon. An average increase in apparent oxygen utilization of 13.4 ± 15.5 µmol kg-1 centered on isopycnal surface 26.6 kg m-3 from 2001 to 2012 was also observed.

Saugus River and Tributaries, Lynn Malden, Revere and Saugus, Massachusetts. Flood Damage Reduction. Volume 8. Appendix K. Environmental

DTIC Science & Technology

1989-06-01

K10 Summary of Soil Analyses for the Salt Marsh Transects K32 KI1 Plant Community Composition Data Along Compartment K33 B Transect K12 Plant...Community Composition Data Along Compartment K33 I Transect K13 Plant Community Composition Data Along Compartment K33 K1 Transect K14 Plant Community... Composition Data Along Compartment K34 K3 Transect K15 Plant Community Composition Data Along Compartment K34 L2 Transect K16 Plant Community Composition

"Subpial Fan Cell" - A Class of Calretinin Neuron in Layer 1 of Adult Monkey Prefrontal Cortex.

PubMed

Gabbott, Paul L A

2016-01-01

Layer 1 of the cortex contains populations of neurochemically distinct neurons and afferent fibers which markedly affect neural activity in the apical dendritic tufts of pyramidal cells. Understanding the causal mechanisms requires knowledge of the cellular architecture and synaptic organization of layer 1. This study has identified eight morphological classes of calretinin immunopositive (CRet+) neurons (including Cajal-Retzius cells) in layer 1 of the prefrontal cortex (PFC) in adult monkey (Macaca fasicularis), with a distinct class - termed "subpial fan (SPF) cell" - described in detail. SPF cells were rare horizontal unipolar CRet+ cells located directly beneath the pia with a single thick primary dendrite that branched into a characteristic fan-like dendritic tree tangential to the pial surface. Dendrites had spines, filamentous processes and thorny branchlets. SPF cells lay millimeters apart with intralaminar axons that ramified widely in upper layer 1. Such cells were GABA immunonegative (-) and occurred in areas beyond PFC. Interspersed amidst SPF cells displaying normal structural integrity were degenerating CRet+ neurons (including SPF cells) and clumps of lipofuscin-rich cellular debris. The number of degenerating SPF cells increased during adulthood. Ultrastructural analyses indicated SPF cell somata received asymmetric (A - presumed excitatory) and symmetric (S - presumed inhibitory) synaptic contacts. Proximal dendritic shafts received mainly S-type and distal shafts mostly A-type input. All dendritic thorns and most dendritic spines received both synapse types. The tangential areal density of SPF cell axonal varicosities varied radially from parent somata - with dense clusters in more distal zones. All boutons formed A-type contacts with CRet- structures. The main post-synaptic targets were dendritic shafts (67%; mostly spine-bearing) and dendritic spines (24%). SPF-SPF cell innervation was not observed. Morphometry of SPF cells indicated a unique class of CRet+/GABA- neuron in adult monkey PFC - possibly a subtype of persisting Cajal-Retzius cell. The distribution and connectivity of SPF cells suggest they act as integrative hubs in upper layer 1 during postnatal maturation. The main synaptic output of SPF cells likely provides a transminicolumnar excitatory influence across swathes of apical dendritic tufts - thus affecting information processing in discrete patches of layer 1 in adult monkey PFC.

Potential role of the Virchow Robin space in the pathogenesis of bacterial meningitis.

PubMed

Chan, Patrick; Meerdink, Denis J; Uchizono, James A

2017-11-01

Meningitis is an infectious disease commonly arising from a bacterial etiology. The rapid progression of morbidity and mortality due to bacterial meningitis requires critical and imminent time-dependent clinical intervention. Although it is unambiguously clear that bacteria must infiltrate the cerebrospinal fluid, the sequence of events in the pathogenesis of bacterial meningitis has not been fully elucidated. Most reviews of the pathogenesis of bacterial meningitis do not specify the anatomical location of bacteria following BBB traversal. We propose an additional hypothesis focusing on the Virchow-Robin space (VRS). The VRS consists of a small, but identifiable perivascular space formed by a sheath of cells derived from the pia mater. The VRS has been described as an immunological space and possibly having a role in several neuropathological diseases. Solute exchange between cerebrospinal fluid and extracellular fluid occurs at the VRS, with subsequent drainage into the subarachnoid space. Because the VRS is continuous with the subpial space, a more direct route to the meninges is facilitated. The involvement of the VRS may have profound implications on the pathogenesis and therapeutic strategies: (1) nasopharyngeal colonization; (2) penetration into the blood stream after crossing the mucosal and epithelial membranes; (3) proliferation in the bloodstream; (4) extravasations through the endothelium of the post-capillary venules to the perivascular VRS; (5) migration from VRS to subpial space; (6) traversal through pia mater, entering the CSF in the subarachnoid space; (7) invasion of the meninges. The implication of the VRS in the pathogenesis of bacterial meningitis would be twofold. First, the VRS could provide an additional route of entry of bacteria into the brain. Second, the VRS could provide an area for bacterial proliferation, and thereby serve as a bacterial reservoir in relatively close proximity to the meninges. The clinical consequences of this hypothesis are: 1) clinical interpretation of laboratory findings, and 2) effective antibiotic delivery into the VRS. If the role of the VRS is established as part of bacterial meningitis pathogenesis, antibiotic pharmacokinetics and pharmacodynamics in the VRS need to be determined. This may result in developing novel antibiotic delivery and clinical strategies to improve morbidity and mortality. Copyright © 2017 Elsevier Ltd. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fast,Jerome; Mei,Fan; Hubbe,John

Most of the instruments were deployed on the ARM Aerial Facility (AAF) Gulfstream-159 (G-1) aircraft, including those that measure atmospheric turbulence, cloud water content and drop size distributions, aerosol precursor gases, aerosol chemical composition and size distributions, and cloud condensation nuclei concentrations. Aerosol microphysical property measurements supplemented routine ARM aerosol measurements made at the surface. The G-1 completed transects over the SGP Central Facility at multiple altitudes within the boundary layer, and within and above clouds.

Comparative population genomics of latitudinal variation in Drosophila simulans and Drosophila melanogaster

PubMed Central

MACHADO, HEATHER E.; BERGLAND, ALAN O.; O’BRIEN, KATHERINE R.; BEHRMAN, EMILY L.; SCHMIDT, PAUL S.; PETROV, DMITRI A.

2016-01-01

Examples of clinal variation in phenotypes and genotypes across latitudinal transects have served as important models for understanding how spatially varying selection and demographic forces shape variation within species. Here, we examine the selective and demographic contributions to latitudinal variation through the largest comparative genomic study to date of Drosophila simulans and Drosophila melanogaster, with genomic sequence data from 382 individual fruit flies, collected across a spatial transect of 19 degrees latitude and at multiple time points over 2 years. Consistent with phenotypic studies, we find less clinal variation in D. simulans than D. melanogaster, particularly for the autosomes. Moreover, we find that clinally varying loci in D. simulans are less stable over multiple years than comparable clines in D. melanogaster. D. simulans shows a significantly weaker pattern of isolation by distance than D. melanogaster and we find evidence for a stronger contribution of migration to D. simulans population genetic structure. While population bottlenecks and migration can plausibly explain the differences in stability of clinal variation between the two species, we also observe a significant enrichment of shared clinal genes, suggesting that the selective forces associated with climate are acting on the same genes and phenotypes in D. simulans and D. melanogaster. PMID:26523848

Waterfowl populations are resilient to immediate and lagged impacts of wildfires in the boreal forest

USGS Publications Warehouse

Lewis, Tyler; Schmutz, Joel A.; Amundson, Courtney L.; Lindberg, Mark S.

2016-01-01

Summary 1. Wildfires are the principal disturbance in the boreal forest, and their size and frequency are increasing as the climate warms. Impacts of fires on boreal wildlife are largely unknown, especially for the tens of millions of waterfowl that breed in the region. This knowledge gap creates significant barriers to the integrative management of fires and waterfowl, leading to fire policies that largely disregard waterfowl. 2. Waterfowl populations across the western boreal forest of North America have been monitored annually since 1955 by the Waterfowl Breeding Population and Habitat Survey (BPOP), widely considered the most extensive wildlife survey in the world. Using these data, we examined impacts of forest fires on abundance of two waterfowl guilds – dabblers and divers. We modelled waterfowl abundance in relation to fire extent (i.e. amount of survey transect burned) and time since fire, examining both immediate and lagged fire impacts. 3. From 1955 to 2014, >1100 fires in the western boreal forest intersected BPOP survey transects, and many transects burned multiple times. Nonetheless, fires had no detectable impact on waterfowl abundance; annual transect counts of dabbler and diver pairs remained stable from the pre- to post-fire period. 4. The absence of fire impacts on waterfowl abundance extended from the years immediately following the fire to those more than a decade afterwards. Likewise, the amount of transect burned did not influence waterfowl abundance, with similar pair counts from the pre- to post-fire period for small (1–20% burned), medium (21–60%) and large (>60%) burns. 5. Policy implications. Waterfowl populations appear largely resilient to forest fires, providing initial evidence that current policies of limited fire suppression, which predominate throughout much of the boreal forest, have not been detrimental to waterfowl populations. Likewise, fire-related management actions, such as prescribed burning or targeted suppression, seem to have limited impacts on waterfowl abundance and productivity. For waterfowl managers, our results suggest that adaptive models of waterfowl harvest, which annually guide hunting quotas, do not need to emphasize fires when integrating climate change effects.

Randomized clinical trial of stapler versus clamp-crushing transection in elective liver resection.

PubMed

Rahbari, N N; Elbers, H; Koch, M; Vogler, P; Striebel, F; Bruckner, T; Mehrabi, A; Schemmer, P; Büchler, M W; Weitz, J

2014-02-01

Various devices have been developed to facilitate liver transection and reduce blood loss in liver resections. None of these has proven superiority compared with the classical clamp-crushing technique. This randomized clinical trial compared the effectiveness and safety of stapler transection with that of clamp-crushing during open liver resection. Patients admitted for elective open liver resection between January 2010 and October 2011 were assigned randomly to stapler transection or the clamp-crushing technique. The primary endpoint was the total amount of intraoperative blood loss. Secondary endpoints included transection time, duration of operation, complication rates and resection margins. A total of 130 patients were enrolled, 65 to clamp-crushing and 65 to stapler transection. There was no difference between groups in total intraoperative blood loss: median (i.q.r.) 1050 (525-1650) versus 925 (450-1425) ml respectively (P = 0·279). The difference in total intraoperative blood loss normalized to the transection surface area was not statistically significant (P = 0·092). Blood loss during parenchymal transection was significantly lower in the stapler transection group (P = 0·002), as were the parenchymal transection time (mean(s.d.) 30(21) versus 9(7) min for clamp-crushing and stapler transection groups respectively; P < 0·001) and total duration of operation (mean(s.d.) 221(86) versus 190(85) min; P = 0·047). There were no significant differences in postoperative morbidity (P = 0·863) or mortality (P = 0·684) between groups. Stapler transection is a safe technique but does not reduce intraoperative blood loss in elective liver resection compared with the clamp-crushing technique. NCT01049607 (http://www.clinicaltrials.gov). © 2014 BJS Society Ltd. Published by John Wiley & Sons Ltd.

Evaluation of Scat Deposition Transects versus Radio Telemetry for Developing a Species Distribution Model for a Rare Desert Carnivore, the Kit Fox.

PubMed

Dempsey, Steven J; Gese, Eric M; Kluever, Bryan M; Lonsinger, Robert C; Waits, Lisette P

2015-01-01

Development and evaluation of noninvasive methods for monitoring species distribution and abundance is a growing area of ecological research. While noninvasive methods have the advantage of reduced risk of negative factors associated with capture, comparisons to methods using more traditional invasive sampling is lacking. Historically kit foxes (Vulpes macrotis) occupied the desert and semi-arid regions of southwestern North America. Once the most abundant carnivore in the Great Basin Desert of Utah, the species is now considered rare. In recent decades, attempts have been made to model the environmental variables influencing kit fox distribution. Using noninvasive scat deposition surveys for determination of kit fox presence, we modeled resource selection functions to predict kit fox distribution using three popular techniques (Maxent, fixed-effects, and mixed-effects generalized linear models) and compared these with similar models developed from invasive sampling (telemetry locations from radio-collared foxes). Resource selection functions were developed using a combination of landscape variables including elevation, slope, aspect, vegetation height, and soil type. All models were tested against subsequent scat collections as a method of model validation. We demonstrate the importance of comparing multiple model types for development of resource selection functions used to predict a species distribution, and evaluating the importance of environmental variables on species distribution. All models we examined showed a large effect of elevation on kit fox presence, followed by slope and vegetation height. However, the invasive sampling method (i.e., radio-telemetry) appeared to be better at determining resource selection, and therefore may be more robust in predicting kit fox distribution. In contrast, the distribution maps created from the noninvasive sampling (i.e., scat transects) were significantly different than the invasive method, thus scat transects may be appropriate when used in an occupancy framework to predict species distribution. We concluded that while scat deposition transects may be useful for monitoring kit fox abundance and possibly occupancy, they do not appear to be appropriate for determining resource selection. On our study area, scat transects were biased to roadways, while data collected using radio-telemetry was dictated by movements of the kit foxes themselves. We recommend that future studies applying noninvasive scat sampling should consider a more robust random sampling design across the landscape (e.g., random transects or more complete road coverage) that would then provide a more accurate and unbiased depiction of resource selection useful to predict kit fox distribution.

The response of tundra springtails (Collembola, Hexapoda) to human activity on the Murman coast of the Kola Penisula, Russia

NASA Astrophysics Data System (ADS)

Olejniczak, Izabella; Boniecki, Paweł; Kaliszewicz, Anita; Panteleeva, Ninel

2018-03-01

This study was carried out in the Dalne Zelentsy settlement (69°07‧N, 36°03‧E) on the Barents Sea of the Kola Penisula in Russia. Three transects were established: the 'new garden transect'; the 'old garden transect'; and the 'settlement transect'. Overall, the number of springtails increased with distance from the 'settlement' and decreased from the 'old garden' towards the tundra. However, in the case of the 'new garden transect' there were no clear trends in springtail abundance. Eleven species of springtail were found, with Parisotoma notabilis being found at each of the studied areas along the transects. Trends in the species diversity of the springtail communities were not clear, and the values of H‧ ranged from 1.36 to 2.08. The springtail communities located 10 m from the 'new garden' and the 'old garden' were characterized by low species diversity compared with the other sites along the transects (H‧ values of 1.36 and 1.67, respectively). There were no differences in species diversity among the springtail communities along the 'settlement transect'.

[Effects of grazing on zoobenthos community in beach].

PubMed

Zhao, Yun-long; An, Chuan-guang; Lin, Ling; Duan, Xiao-wei; Zeng, Cuo; Cui, Li-li

2007-05-01

In May (spring) and October (autumn) 2005, the effects of grazing on the zoobenthos community in Chongming Dongtan wetland of Shanghai were investigated. A total of 3 transects including 90 sampling plots were set up. Transects I and II were in feeding area, and transect III was in non-pasture area. All of these three transects were set in mid-tidal zone. 13 zoobenthos species were observed, with 7 species of arthropod, 4 species of mollusk, and 2 species of annelid. In spring, there were 6, 8 and 10 species in transects I , II and III while in autumn, the species number was 6, 8 and 12, respectively. The mean abundance of zoobenthos community in all transects was higher in autumn than in spring, and transect III had the highest mean abundance and biomass both in autumn and spring. Transect III also had the highest evenness, richness and diversity, indicating that grazing could change the species distribution of zoobenthos, and affect their abundance and biomass to different degree. Grazing had made certain negative effects on the biodiversity of zoobenthos community in Chongming Dongtan wetland.

Rotational stability test for the diagnosis of radial collateral ligament rupture in the fingers: Anatomical study.

PubMed

Lazarus, P; Hidalgo Diaz, J J; Prunières, G; Pire, E; Taleb, C; Honecker, S; Bellemère, P; Fontaine, C; Liverneaux, P A

2017-04-01

Diagnosing rupture of the radial collateral ligament (RCL) of the finger metacarpophalangeal (MCP) joints is difficult. The aim of this cadaver study was to validate a rotational test for the MCP after RCL transection. With the MCP and proximal interphalangeal joints in flexion, rotation along the axis of the proximal phalanx was applied through an extended distal interphalangeal joint to 36 cadaver fingers. Each finger's pulp described an arc of pronation and supination that was noted on the palm. The test was repeated three times: before transection, after transection of the proper collateral ligament (CL) and after transection of both the proper and accessory CLs. Rotational arcs were measured in pronation and supination. Mean length of the pronation arc after transection of the main RCL was 17.53mm, while it was only 12.41mm before transection for the supination arc. Mean length of the pronation arc after transection of both CLs was 22.83mm compared to only 11.93mm before transection. Our results show a significant difference in pronation stability of the MCP joint after transection of the RCL proper. We can conclude that this rotational stability test is a valid test for diagnosing RCL rupture in MCP joints. Copyright © 2017 SFCM. Published by Elsevier Masson SAS. All rights reserved.

Inter-Annual and Shorter-Term Variability in Physical and Biological Characteristics Across Barrow Canyon in August - September 2005-2014

NASA Astrophysics Data System (ADS)

Ashjian, C. J.; Okkonen, S. R.; Campbell, R. G.; Alatalo, P.

2014-12-01

Late summer physical and biological conditions along a 37-km transect crossing Barrow Canyon have been described for the past ten years as part of an ongoing program, supported by multiple funding sources including the NSF AON, focusing on inter-annual variability and the formation of a bowhead whale feeding hotspot near Barrow. These repeated transects (at least two per year, separated in time by days-weeks) provide an opportunity to assess the inter-annual and shorter term (days-weeks) changes in hydrographic structure, ocean temperature, current velocity and transport, chlorophyll fluorescence, nutrients, and micro- and mesozooplankton community composition and abundance. Inter-annual variability in all properties was high and was associated with larger scale, meteorological forcing. Shorter-term variability could also be high but was strongly influenced by changes in local wind forcing. The sustained sampling at this location provided critical measures of inter-annual variability that should permit detection of longer-term trends that are associated with ongoing climate change.

Sampling coarse woody debris along spoked transects

Treesearch

Paul C. Van Deusen; Jeffery H. Gove

2011-01-01

Line transects are commonly used for sampling coarse woody debris (CWD). The USDA Forest Service Forest Inventory and Analysis programme uses a variant of this method that involves sampling for CWD along transects that radiate from the centre of a circular plot-like spokes on a wheel. A new approach for analysis of data collected with spoked transects is developed....

Correction of bias in belt transect studies of immotile objects

USGS Publications Warehouse

Anderson, D.R.; Pospahala, R.S.

1970-01-01

Unless a correction is made, population estimates derived from a sample of belt transects will be biased if a fraction of, the individuals on the sample transects are not counted. An approach, useful for correcting this bias when sampling immotile populations using transects of a fixed width, is presented. The method assumes that a searcher's ability to find objects near the center of the transect is nearly perfect. The method utilizes a mathematical equation, estimated from the data, to represent the searcher's inability to find all objects at increasing distances from the center of the transect. An example of the analysis of data, formation of the equation, and application is presented using waterfowl nesting data collected in Colorado.

Barrier effects of remote high mountain on atmospheric metal transport in the eastern Tibetan Plateau.

PubMed

Bing, Haijian; Zhou, Jun; Wu, Yanhong; Luo, Xiaosan; Xiang, Zhongxiang; Sun, Hongyang; Wang, Jipeng; Zhu, He

2018-07-01

Anthropogenic metals adsorbed on suspended fine particles can be deposited on remote and inaccessible high mountains by long-range atmospheric transport. In this study, we investigated the cadmium (Cd) and lead (Pb) in the soils, mosses and rainfall of three transects on the Gongga Mountain, eastern Tibetan Plateau, to understand the mountain interception effects on their atmospheric transport. The concentrations of Cd and Pb in the soils and mosses displayed a pattern of eastern transect>northern transect>western transect. The distribution of Cd and Pb on the eastern transect increased from 2000 to 2900m a.s.l. (above sea level), decreased toward the timberline, and increased again with altitude; on the northern transect, it generally decreased with altitude whereas a distribution trend was not clearly observed on the western transect. The Cd and Pb concentrations in the rainfall of the eastern transect generally decreased with altitude, and they were higher inside forests than outside forests and temporally higher in the winter than the summer. The Pb isotopic ratios coupled with moss bio-monitoring distinguished anthropogenic sources of Cd and Pb on the eastern and northern transects, whereas bedrock weathering was the main source of Cd and Pb on the western transect. We proposed a conceptual model to delineate the effects of terrain, local climate and vegetation on the transport of atmospheric metals. Our results highlighted the high mountains in the eastern Tibetan Plateau as an effective natural barrier limiting atmospheric metal transport. Copyright © 2018 Elsevier B.V. All rights reserved.

Comparison of line transects and point counts for monitoring spring migration in forested wetlands

USGS Publications Warehouse

Wilson, R.R.; Twedt, D.J.; Elliott, A.B.

2000-01-01

We compared the efficacy of 400-m line transects and sets of three point counts at detecting avian richness and abundance in bottomland hardwood forests and intensively managed cottonwood (Populus deltoides) plantations within the Mississippi Alluvial Valley. We detected more species and more individuals on line transects than on three point counts during 218 paired surveys conducted between 24 March and 3 June, 1996 and 1997. Line transects also yielded more birds per unit of time, even though point counts yielded higher estimates of relative bird density. In structurally more-complex bottomland hardwood forests, we detected more species and individuals on line transects, but in more-open cottonwood plantations, transects surpassed point counts only at detecting species within 50 m of the observer. Species richness and total abundance of Nearctic-Neotropical migrants and temperate migrants were greater on line transects within bottomland hardwood forests. Within cottonwood plantations, however, only species richness of Nearctic-Neotropical migrants and total abundance of temperate migrants were greater on line transects. Because we compared survey techniques using the same observer, within the same forest stand on a given day, we assumed that the technique yielding greater estimates of avian species richness and total abundance per unit of effort is superior. Thus, for monitoring migration within hardwood forests of the Mississippi Alluvial Valley, we recommend using line transects instead of point counts.

Evaluation of radio-tracking and strip transect methods for determining foraging ranges of Black-Legged Kittiwakes

USGS Publications Warehouse

Ostrand, William D.; Drew, G.S.; Suryan, R.M.; McDonald, L.L.

1998-01-01

We compared strip transect and radio-tracking methods of determining foraging range of Black-legged Kittiwakes (Rissa tridactyla). The mean distance birds were observed from their colony determined by radio-tracking was significantly greater than the mean value calculated from strip transects. We determined that this difference was due to two sources of bias: (1) as distance from the colony increased, the area of available habitat also increased resulting in decreasing bird densities (bird spreading). Consequently, the probability of detecting birds during transect surveys also would decrease as distance from the colony increased, and (2) the maximum distance birds were observed from the colony during radio-tracking exceeded the extent of the strip transect survey. We compared the observed number of birds seen on the strip transect survey to the predictions of a model of the decreasing probability of detection due to bird spreading. Strip transect data were significantly different from modeled data; however, the field data were consistently equal to or below the model predictions, indicating a general conformity to the concept of declining detection at increasing distance. We conclude that radio-tracking data gave a more representative indication of foraging distances than did strip transect sampling. Previous studies of seabirds that have used strip transect sampling without accounting for bird spreading or the effects of study-area limitations probably underestimated foraging range.

Comparison between surgical and standing percutaneous contact Nd:YAG laser periosteal transection for potential treatment of equine limb deformities

NASA Astrophysics Data System (ADS)

Tate, Lloyd P.; Baines, Steven J.; Meuten, Donald J.; Stefanacci, J.

1994-09-01

Medial and lateral aspects of both radiuses were subjected to periosteal transection of nine healthy equine foals. One site per foal was subjected to surgical periosteal transection and elevation under general anesthesia. The remaining three sites of each foal after injection of a local anesthetic received Nd:YAG contact percutaneous periosteal transection. All radiuses were evaluated radiographically prior to periosteal transection and immediately prior to euthanasia. Foals were euthanized at 3 days, 31 to 34 days, and 67 days post-periosteal transection and gross postmortem and histologic examination performed on each site. Radiographically, periosteal proliferation occurred at all the conventional surgery sites and a majority of the percutaneous laser sites by 30 days post-treatment and was present at 67 days. No limb angulations were noted to occur in any of the foals. The conclusion of the study was that Nd:YAG percutaneous laser periosteal transection was successful in producing periosteal obliteration but with a different histologic appearance than that produced by conventional surgery.

Non-transecting bulbar urethroplasty

PubMed Central

Andrich, Daniela E.; Mundy, Anthony R.

2015-01-01

Excision and end-to-end anastomosis (EPA) has been the preferred urethroplasty technique for short bulbar strictures and is associated with an excellent functional outcome. Driven by concerns over the potential morbidity associated with dividing the urethra, therefore compromising spongiosal blood flow, as well as spongiofibrosis being superficial in the majority of non-traumatic bulbar strictures, the non-transecting technique for bulbar urethroplasty has been developed with the aim of achieving the same success as EPA without the morbidity associated with transection. This manuscript highlights the fundamental principles underlying the ongoing debate—transection or non-transection of the strictured bulbar urethra? The potential advantages of avoiding dividing the corpus spongiosum of the urethra are discussed. The non-transecting anastomotic procedure together with its various modifications are decribed in detail. Our experience with this technique is presented. Non-transecting excision of spongiofibrosis with preservation of well vascularised underlying spongiosum provides an excellent alternative to dividing the urethra during urethroplasty for short non-traumatic proximal bulbar strictures. PMID:26816808

The Effect of Oyster Reef Morphology on Particulate Transfer in a North Carolina Tidal Creek

NASA Astrophysics Data System (ADS)

Lemon, M. G.; Posey, M.; Mallin, M.; Alphin, T.

2014-12-01

The eastern oyster (Crassostrea virginica) is a vital ecosystem engineer species, providing a number of ecosystem services that structure and maintain estuarine environments through the construction of large, hard-bottom reef complexes. Through suspension feeding, oysters clear the water column of particulates, leading to decreased suspended material and enhanced benthic pelagic coupling. Past field studies have indicated the potential importance of the physical reef structure in regulating the transfer of particulate material in the seston. In order to directly assess the existence of the physical reef effect, multiple field experiments were performed in a small tidal creek estuary along the south eastern coast of North Carolina. Comparison of clearance rates derived from two different in situ methods, one accounting for the physical structure of the oyster reef in addition to oyster filtration and one looking at oyster filtration alone, indicate that the reef structure may increase the amount of particulate removal performed by the reef by more than 4 times the removal performed by oyster filtration alone. A defaunation experiment was performed by eliminating the live component of the oyster reef and comparing particulate transfer of this defaunated transect to that of an adjacent faunated transect. The defaunated transect had reduced but not significantly lower material removal when compared to the faunated transect prior to defaunation. Results from short and long term sediment collection and flow velocity measurements indicate that the physical effect of oyster reefs is strong over short temporal scales (days) but is much smaller when evaluated over longer time periods (months). Generally, large silt and small sand sized material is permanently removed from the seston due to the interaction of oyster reef structure and tidal flows, however the transfer of small and medium sized silt grains is only slowed down by the presence of large reef complexes. This effect has important ecological implications for downstream water quality and must be accounted for when modeling water quality improvements performed by oysters.

Suspended Sediment Character in the Tidal Mekong River: Observations from LISST Profiling

NASA Astrophysics Data System (ADS)

Di Leonardo, D. R.; Allison, M. A.

2016-02-01

In two recent cooperative field campaigns, teams of researchers from the US and Vietnam collected hydrological and sedimentological data during a low flow season and a high flow season on the lower 100 km of the Song Hau distributary of the Mekong River. The objective of this study is to describe the forcing controls (e.g., tidal and riverine flow, water column stratification, resuspension) on suspended sediment grain size (e.g. mass, volume, granulometry, degree of flocculation) as measured by a Sequoia Scientific LISST 100X mounted on a profiling CTD. LISST (Type C, 2.5-500 µm size range) casts were collected at five transects in the Song Hau distributary. Four transects were located in the Dinh An and the Tran De channels immediately above the ocean interface with one additional transect located above the channel bifurcation, 40 km from the river mouth. Casts were collected at multiple stations across each channel transect for 12 hour and 24 hour continuous periods. Stationary ADCP data was collected during each 5-15 minute cast period and used to characterize shear stress. Preliminary results from the LISST suggest that the majority of suspended sediment is in the silt and very fine sand range. Increasing concentrations of all size fractions towards the bed suggests a local sediment source. Bimodal grain size distributions, with the coarser peak in the 150 µm to 250 µm range, are observed frequently, especially in the low discharge study. Grain size frequencies from the high discharge study tend to be more often unimodal. While there was effectively no salinity observed during the October 2014 high flow season, a maximum of 25.8 PSU was observed in the March 2015 low flow season. These results suggest that flocculation is an important process in the Mekong River, particularly during periods of higher salinity.

A hierarchical model combining distance sampling and time removal to estimate detection probability during avian point counts

USGS Publications Warehouse

Amundson, Courtney L.; Royle, J. Andrew; Handel, Colleen M.

2014-01-01

Imperfect detection during animal surveys biases estimates of abundance and can lead to improper conclusions regarding distribution and population trends. Farnsworth et al. (2005) developed a combined distance-sampling and time-removal model for point-transect surveys that addresses both availability (the probability that an animal is available for detection; e.g., that a bird sings) and perceptibility (the probability that an observer detects an animal, given that it is available for detection). We developed a hierarchical extension of the combined model that provides an integrated analysis framework for a collection of survey points at which both distance from the observer and time of initial detection are recorded. Implemented in a Bayesian framework, this extension facilitates evaluating covariates on abundance and detection probability, incorporating excess zero counts (i.e. zero-inflation), accounting for spatial autocorrelation, and estimating population density. Species-specific characteristics, such as behavioral displays and territorial dispersion, may lead to different patterns of availability and perceptibility, which may, in turn, influence the performance of such hierarchical models. Therefore, we first test our proposed model using simulated data under different scenarios of availability and perceptibility. We then illustrate its performance with empirical point-transect data for a songbird that consistently produces loud, frequent, primarily auditory signals, the Golden-crowned Sparrow (Zonotrichia atricapilla); and for 2 ptarmigan species (Lagopus spp.) that produce more intermittent, subtle, and primarily visual cues. Data were collected by multiple observers along point transects across a broad landscape in southwest Alaska, so we evaluated point-level covariates on perceptibility (observer and habitat), availability (date within season and time of day), and abundance (habitat, elevation, and slope), and included a nested point-within-transect and park-level effect. Our results suggest that this model can provide insight into the detection process during avian surveys and reduce bias in estimates of relative abundance but is best applied to surveys of species with greater availability (e.g., breeding songbirds).

Women's dietary diversity scores and childhood anthropometric measurements as indices of nutrition insecurity along the urban-rural continuum in Ouagadougou, Burkina Faso.

PubMed

Chagomoka, Takemore; Drescher, Axel; Glaser, Rüdiger; Marschner, Bernd; Schlesinger, Johannes; Nyandoro, George

2016-01-01

Malnutrition is still prevalent worldwide, and its severity, which differs between regions and countries, has led to international organisations proposing its inclusion in the global development framework that will succeed the Millennium Development Goals (post-2015 framework). In Sub-Saharan Africa, malnutrition is particularly severe, among women and children under 5 years. The prevalence of malnutrition has been reported worldwide, differing from region to region and country to country. Nevertheless, little is known about how malnutrition differs between multiple locations along an urban-rural continuum. A survey was carried out in and around Ouagadougou, Burkina Faso, between August and September 2014 to map household nutrition insecurity along the urban-rural continuum, using a transect approach to guide the data collection. Transects of 70 km long and 2 km wide directed radially from the city centre outwards were laid, and data were collected from randomly selected households along these transects. Women's dietary diversity scores (WDDSs) were calculated from a sample of 179 women of reproductive age (15-49 years) from randomly selected households. Additionally, anthropometric data (height/length and weight) of 133 children under 5 years of age were collected along the same transects for the computation of anthropometric indices. We found that relative proportions of the nutrition indices such as stunting, wasting and underweight varied across the urban-rural continuum. Rural households (15%) had the highest relative proportion of WDDS compared with urban households (11%) and periurban households (8%). There was a significant association between children under 5 years' nutritional status (wasting, stunting and underweight) and spatial location (p=0.023). The level of agricultural activities is a possible indicator of wasting in children aged 6-59 months (p=0.032). Childhood undernutrition certainly has a spatial dimension that is highly influenced by the degree of urbanity, which should be taken into consideration in policy formulation and implementation.

The influence of transection site on the development of pancreatic fistula in patients undergoing distal pancreatectomy: A review of 294 consecutive cases.

PubMed

Sell, Naomi M; Pucci, Michael J; Gabale, Salil; Leiby, Benjamin E; Rosato, Ernest L; Winter, Jordan M; Yeo, Charles J; Lavu, Harish

2015-06-01

Pancreatic fistula (PF) is a significant cause of morbidity in patients undergoing distal pancreatectomy (DP), with an incidence of 15-40%. It remains unclear if the location of pancreatic transection affects the rate of PF occurrence. This study examines the correlation between the transection site of the pancreas during DP and the incidence of PF. All cases of DP from October 2005 to January 2012 were reviewed retrospectively from an institutional review board-approved database at the Thomas Jefferson University Hospital. Patient demographics and perioperative outcomes were analyzed. The pancreatic transection location was determined by review of operative reports, and then dichotomized into 2 groups: neck/body or tail. PF were graded following the International Study Group on Pancreatic Fistula guidelines. During the study period, 294 DP were performed with 244 pancreas transections at the neck/body and 50 at the tail. Of the 294 patients, 52 (17.7%) developed a postoperative PF. The incidence of PF after transection at the tail of the pancreas was higher (28%) when compared with transection at the neck/body (15.6%; P = .04). When stratified by PF grade, grade A PF occurred more commonly when transection of the gland was at the tail (22% tail vs 8.2% neck/body; P = .007); however, no difference was found for grade B/C PF (6% tail vs 7.4% neck/body; P = 1). Our data suggest that PF occurs more often when the tail is transected during DP, although the majority are low grade and of minimal clinical significance. More severe PF occurred equally between the transection sites. Copyright © 2015 Elsevier Inc. All rights reserved.

Spontaneous regeneration of the corticospinal tract after transection in young rats: a key role of reactive astrocytes in making favorable and unfavorable conditions for regeneration.

PubMed

Iseda, T; Nishio, T; Kawaguchi, S; Yamanoto, M; Kawasaki, T; Wakisaka, S

2004-01-01

We demonstrated the occurrence of marked regeneration of the corticospinal tract (CST) after a single transection and failure of regeneration after a repeated transection in young rats. To provide convincing evidence for the complete transection and regeneration we used retrograde neuronal double labeling. Double-labeled neurons that took up the first tracer from the transection site and the second tracer from the injection site caudal to the transection site were observed in the sensorimotor cortex. The anterograde tracing method revealed various patterns of regeneration. In the most successful cases the vast majority of regenerated fibers descended in the normal tract and terminated normally whereas a trace amount of fibers coursed aberrantly. In the less successful cases fibers descended partly normally and partly aberrantly or totally aberrantly. To clarify the role of astrocytes in determining the success or failure of regeneration we compared expression of glial fibrillary acidic protein (GFAP), vimentin and neurofilament (NF) immunoreactivity (IR) in the lesion between single and repeated transections. In either transection, astrocytes disappeared from the CST near the lesion site as early as 3 h after lesioning. However, by 24 h after a single transection, immature astrocytes coexpressing GFAP- and vimentin-IR appeared in the former astrocyte-free area and NF-positive axons crossed the lesion. By contrast, after a repeated transection the astrocyte-free area spread and NF-positive axons never crossed the lesion. It appears likely that the major sign, and possibly cause of failure of regeneration is the prolonged disappearance of astrocytes in the lesioned tract area. Copyright 2004 IBRO

Potential of human dental stem cells in repairing the complete transection of rat spinal cord

NASA Astrophysics Data System (ADS)

Yang, Chao; Li, Xinghan; Sun, Liang; Guo, Weihua; Tian, Weidong

2017-04-01

Objective. The adult spinal cord of mammals contains a certain amount of neural precursor cells, but these endogenous cells have a limited capacity for replacement of lost cells after spinal cord injury. The exogenous stem cells transplantation has become a therapeutic strategy for spinal cord repairing because of their immunomodulatory and differentiation capacity. In addition, dental stem cells originating from the cranial neural crest might be candidate cell sources for neural engineering. Approach. Human dental follicle stem cells (DFSCs), stem cells from apical papilla (SCAPs) and dental pulp stem cells (DPSCs) were isolated and identified in vitro, then green GFP-labeled stem cells with pellets were transplanted into completely transected spinal cord. The functional recovery of rats and multiple neuro-regenerative mechanisms were explored. Main results. The dental stem cells, especially DFSCs, demonstrated the potential in repairing the completely transected spinal cord and promote functional recovery after injury. The major involved mechanisms were speculated below: First, dental stem cells inhibited the expression of interleukin-1β to reduce the inflammatory response; second, they inhibited the expression of ras homolog gene family member A (RhoA) to promote neurite regeneration; third, they inhibited the sulfonylurea receptor1 (SUR-1) expression to reduce progressive hemorrhagic necrosis; lastly, parts of the transplanted cells survived and differentiated into mature neurons and oligodendrocytes but not astrocyte, which is beneficial for promoting axons growth. Significance. Dental stem cells presented remarkable tissue regenerative capability after spinal cord injury through immunomodulatory, differentiation and protection capacity.

Estimating nest detection probabilities for white-winged dove nest transects in Tamaulipas, Mexico

USGS Publications Warehouse

Nichols, J.D.; Tomlinson, R.E.; Waggerman, G.

1986-01-01

Nest transects in nesting colonies provide one source of information on White-winged Dove (Zenaida asiatica asiatica) population status and reproduction. Nests are counted along transects using standardized field methods each year in Texas and northeastern Mexico by personnel associated with Mexico's Office of Flora and Fauna, the Texas Parks and Wildlife Department, and the U.S. Fish and Wildlife Service. Nest counts on transects are combined with information on the size of nesting colonies to estimate total numbers of nests in sampled colonies. Historically, these estimates have been based on the actual nest counts on transects and thus have required the assumption that all nests lying within transect boundaries are detected (seen) with a probability of one. Our objectives were to test the hypothesis that nest detection probability is one and, if rejected, to estimate this probability.

The time course of taste bud regeneration after glossopharyngeal or greater superficial petrosal nerve transection in rats.

PubMed

St John, Steven J; Garcea, Mircea; Spector, Alan C

2003-01-01

We previously have published data detailing the time course of taste bud regeneration in the anterior tongue following transection of the chorda tympani (CT) nerve in the rat. This study extends the prior work by determining the time course of taste bud regeneration in the vallate papilla, soft palate and nasoincisor ducts (NID) following transection of either the glossopharyngeal (GL) or greater superficial petrosal (GSP) nerve. Following GL transection in rats (n = 6 per time point), taste buds reappeared in the vallate papilla between 15 and 28 days after surgery, and returned to 80.3% of control levels (n = 12) of taste buds by 70 days postsurgery. The first appearance and the final percentage of the normal complement of regenerated vallate taste buds after GL transection resembled that seen previously in the anterior tongue after CT transection. However, in the latter case, regenerated taste buds reached asymptotic levels by 42 days after surgery, whereas within the time frame of the present study, a clear asymptotic return of vallate taste buds was not observed. In contrast to the posterior (and anterior) tongue, only 25% of the normal complement of palatal taste buds regenerated by 112 days and 224 days after GSP transection (n = 9). The difference in regenerative capacity might relate to the surgical approach used to transect the GSP. These experiments provide useful parametric data for investigators studying the functional consequences of gustatory nerve transection and regeneration.

High-Resolution Remote Sensing and Stable Isotope Patterns Across Heath-Shrub-Forest Ecotone at Abisko and Vassijaure, Northern Sweden

NASA Astrophysics Data System (ADS)

Schwan, M. R.; Herrick, C.; Hobbie, E. A.; Chen, J.; Varner, R. K.; Palace, M. W.; Marek, E.; Kashi, N. N.; Smith, S. L.

2015-12-01

Rapid warming in arctic and sub-arctic environments shifts plant community structure which in turn can alter carbon cycling by releasing large stocks of carbon sequestered in arctic soils. Much work has been done in sub-arctic peatlands to understand how shifts in dominant vegetation cover can ultimately affect global carbon balances, but less focus has been given to upland environments where similar changes are occurring. Recent circumpolar expansion of deciduous shrubs and trees in sub-arctic upland environments may alter carbon cycling due to shrubs and trees sequestering less C in soils than the heath plants they typically replace. In this study we explored the relationship between nutrient and carbon cycling and above-ground vegetation on six transects which traverse an ecotone gradient from heath tundra (dominated by ericoid mycorrhizal plants) through deciduous shrubs to deciduous trees (dominated by ectomycorrhizal plants) in upland environments of sub-arctic Sweden near Vassijaure (~850 mm precipitation) and Abisko (~300 mm precipitation). We collected soil and foliage for analysis of natural abundances of stable carbon and nitrogen isotopes (δ13C and δ15N), which can be a sensitive indicator of C and N dynamics. We also took high-resolution remote aerial imagery over the transects to calculate percent cover of vegetation types using GIS software. We concurrently estimated percent cover in smaller plots on the ground of three dominant species, Empetrum nigrum, Betula nana, and Betula pubescens, to serve as ground-truthing for the aerial imagery. Analysis of vegetation cover data shows significant differences in vegetation types along the transects. Preliminary multiple regression analysis of isotopes shows that δ13C in organic soil at the Vassijaure site is mostly controlled by distance along the transect, an interaction term between transect distance and soil depth, and δ15N (adjusted r2 = 0.85, p < 0.0001). Values of δ13C were lower in soils in the shrubs and forest than in the heath. In regression analyses, δ15N was primarily controlled by depth, and secondarily by heath cover (adjusted r2 = 0.68, p < 0.0001). These results suggest that trees and shrubs are sequestering carbon, and interactions between plants and belowground soil communities may be driving nitrogen dynamics.

Postoperative occipital neuralgia with and without C2 nerve root transection during atlantoaxial screw fixation: a post-hoc comparative outcome study of prospectively collected data.

PubMed

Yeom, Jin S; Buchowski, Jacob M; Kim, Ho-Joong; Chang, Bong-Soon; Lee, Choon-Ki; Riew, K Daniel

2013-07-01

Although routine transection of the C2 nerve root during atlantoaxial segmental screw fixation has been recommended by some surgeons, it remains controversial and to our knowledge no comparative studies have been performed to determine whether transection or preservation of the C2 nerve root affects patient-derived sensory outcomes. The purpose of this study is to specifically analyze patient-derived sensory outcomes over time in patients with intentional C2 nerve root transection during atlantoaxial segmental screw fixation compared with those without transection. This is a post-hoc comparative analysis of prospectively collected patient-derived outcome data. The sample consists of 24 consecutive patients who underwent intentional bilateral transection of the C2 nerve root during posterior atlantoaxial segmental screw fixation (transection group) and subsequent 41 consecutive patients without transection (preservation group). A visual analog scale (VAS) score was used for occipital neuralgia as the primary outcome measure and VAS score for neck pain, neck disability index score and Japanese Orthopedic Association score for cervical myelopathy and recovery rate, with bone union rate as the secondary outcome measure. Patient-derived outcomes including change in VAS score for occipital neuralgia over time were statistically compared between the two groups. This study was not supported by any financial sources and there is no topic-specific conflict of interest related to the authors of this study. Seven (29%) of the 24 patients in the transection group experienced increased neuralgic pain at 1 month after surgery either because of newly developed occipital neuralgia or aggravation of preexisting occipital neuralgia. Four of the seven patients required almost daily medication even at the final follow-up (44 and 80 months). On the other hand, only four (10%) of 41 patients in the preservation group had increased neuralgic pain at 1 month after surgery, and at ≥ 1 year, no patients had increased neuralgic pain. The difference in the prevalence of increased neuralgic pain between the two groups was statistically significant at all time points (3, 6, 12, and 24 months postoperatively) except at 1 month postoperatively. The intensity of neuralgic pain, which preoperatively had not been significantly different between the two groups, was significantly higher in the transection group at the final follow-up. C2 nerve root transection is not a benign procedure and, in our experience, more than a quarter of the patients experience increased neuralgic pain following C2 nerve root transection. Because the prevalence and intensity of postoperative neuralgia was significantly higher with C2 nerve root transection than with its preservation, we recommend against routine C2 nerve root transection when performing atlantoaxial segmental screw fixation. Copyright © 2013 Elsevier Inc. All rights reserved.

“Subpial Fan Cell” — A Class of Calretinin Neuron in Layer 1 of Adult Monkey Prefrontal Cortex

PubMed Central

Gabbott, Paul L. A.

2016-01-01

Layer 1 of the cortex contains populations of neurochemically distinct neurons and afferent fibers which markedly affect neural activity in the apical dendritic tufts of pyramidal cells. Understanding the causal mechanisms requires knowledge of the cellular architecture and synaptic organization of layer 1. This study has identified eight morphological classes of calretinin immunopositive (CRet+) neurons (including Cajal-Retzius cells) in layer 1 of the prefrontal cortex (PFC) in adult monkey (Macaca fasicularis), with a distinct class — termed “subpial fan (SPF) cell” — described in detail. SPF cells were rare horizontal unipolar CRet+ cells located directly beneath the pia with a single thick primary dendrite that branched into a characteristic fan-like dendritic tree tangential to the pial surface. Dendrites had spines, filamentous processes and thorny branchlets. SPF cells lay millimeters apart with intralaminar axons that ramified widely in upper layer 1. Such cells were GABA immunonegative (-) and occurred in areas beyond PFC. Interspersed amidst SPF cells displaying normal structural integrity were degenerating CRet+ neurons (including SPF cells) and clumps of lipofuscin-rich cellular debris. The number of degenerating SPF cells increased during adulthood. Ultrastructural analyses indicated SPF cell somata received asymmetric (A — presumed excitatory) and symmetric (S — presumed inhibitory) synaptic contacts. Proximal dendritic shafts received mainly S-type and distal shafts mostly A-type input. All dendritic thorns and most dendritic spines received both synapse types. The tangential areal density of SPF cell axonal varicosities varied radially from parent somata — with dense clusters in more distal zones. All boutons formed A-type contacts with CRet- structures. The main post-synaptic targets were dendritic shafts (67%; mostly spine-bearing) and dendritic spines (24%). SPF-SPF cell innervation was not observed. Morphometry of SPF cells indicated a unique class of CRet+/GABA- neuron in adult monkey PFC — possibly a subtype of persisting Cajal-Retzius cell. The distribution and connectivity of SPF cells suggest they act as integrative hubs in upper layer 1 during postnatal maturation. The main synaptic output of SPF cells likely provides a transminicolumnar excitatory influence across swathes of apical dendritic tufts — thus affecting information processing in discrete patches of layer 1 in adult monkey PFC. PMID:27147978

Measure of pancreas transection and postoperative pancreatic fistula.

PubMed

Takahashi, Shinichiro; Gotohda, Naoto; Kato, Yuichiro; Konishi, Masaru

2016-05-15

In pancreaticoduodenectomy (PD), a standard protocol for pancreas transection has not been established although the method of pancreas transection might be involved in the occurrence of postoperative pancreatic fistula (POPF). This study aimed to compare whether pancreas transection by ultrasonically activated shears (UAS) or that by scalpel contributed more to POPF development. A prospective database of 171 patients who underwent PD for periampullary tumor at National Cancer Center Hospital East between January 2010 and June 2013 was reviewed. Among the 171 patients, 93 patients with soft pancreas were specifically included in this study. Surgical results and background were compared between patients with pancreas transection by UAS and scalpel to evaluate the effectiveness of UAS on reducing POPF. Body mass index, main pancreatic duct diameter, or other clinicopathologic factors that have been reported as predictive factors for POPF were not significantly different between the two groups. The incidence of all grades of POPF and that of grade B were significantly lower in the scalpel group (52%, 4%) than in the UAS group (74%, 42%). Postoperative complications ≥ grade III were also significantly fewer in the scalpel group. Scalpel transection was less associated with POPF than UAS transection in patients who underwent PD for soft pancreas. The method of pancreas transection plays an important role in the prevention of clinical POPF. Copyright © 2016 Elsevier Inc. All rights reserved.

Effect of luminal contents on postresectional longitudinal and mucosal growth in the ileum of suckling rats.

PubMed

Ford, W D; de Vries, J E; Ross, J S; Malt, R A

1985-11-01

Effects of luminal contents on adaptive growth of the ileum in the neonatal small bowel of rats were examined after resection of the proximal small bowel and after removal of the ileum from the enteric stream. Four weeks after resection of the proximal 60% of the small bowel in 10-day-old rats, the distal 40% of the small bowel elongated by 281%. This distal segment also elongated by 265% after intestinal transection (p greater than 0.05), but by only 191% when it was bypassed (bypass versus resection or transection, p less than 0.001). After resection the distal villi were 81% taller, but after transection they were only 19% taller (p less than 0.001 versus resection); after bypass they did not grow (p less than 0.001 versus resection or transection). The distal crypts were 404% deeper after resection, 331% deeper after transection (p less than 0.05), and 291% deeper after bypass (p less than 0.001 versus resection, p greater than 0.05 versus transection). The DNA content was 517% greater after resection, 364% greater after transection (p less than 0.001), and 73% greater after bypass (p less than 0.001 versus transection or resection). Maximal elongation of the small bowel occurs in the presence of luminal nutrition. Increasing luminal nutrition is associated with increasing mucosal hyperplasia.

Shrinkage of ipsilateral taste buds and hyperplasia of contralateral taste buds following chorda tympani nerve transection.

PubMed

Li, Yi-Ke; Yang, Juan-Mei; Huang, Yi-Bo; Ren, Dong-Dong; Chi, Fang-Lu

2015-06-01

The morphological changes that occur in the taste buds after denervation are not well understood in rats, especially in the contralateral tongue epithelium. In this study, we investigated the time course of morphological changes in the taste buds following unilateral nerve transection. The role of the trigeminal component of the lingual nerve in maintaining the structural integrity of the taste buds was also examined. Twenty-four Sprague-Dawley rats were randomly divided into three groups: control, unilateral chorda tympani nerve transection and unilateral chorda tympani nerve transection + lingual nerve transection. Rats were allowed up to 42 days of recovery before being euthanized. The taste buds were visualized using a cytokeratin 8 antibody. Taste bud counts, volumes and taste receptor cell numbers were quantified and compared among groups. No significant difference was detected between the chorda tympani nerve transection and chorda tympani nerve transection + lingual nerve transection groups. Taste bud counts, volumes and taste receptor cell numbers on the ipsilateral side all decreased significantly compared with control. On the contralateral side, the number of taste buds remained unchanged over time, but they were larger, and taste receptor cells were more numerous postoperatively. There was no evidence for a role of the trigeminal branch of the lingual nerve in maintaining the structural integrity of the anterior taste buds.

Neuroprotective effects of (-)-epigallocatechin-3-gallate (EGCG) against peripheral nerve transection-induced apoptosis.

PubMed

Kian, Kosar; Khalatbary, Ali Reza; Ahmadvand, Hassan; Karimpour Malekshah, Abbasali; Shams, Zahra

2018-01-02

Recent studies revealed the neuroprotective effects of epigallocatechin-3-gallate (EGCG) on a variety of neural injury models. The purpose of this study was to determine the neuroprotective effects of EGCG following sciatic nerve transection (SNT). Rats were randomly divided into four groups each as follows: Sham-operated group, SNT group, and Pre-EGCG (50-mg/kg, i.p., 30 minutes before nerve transection and followed for 3 days) and Post-EGCG (50-mg/kg, i.p., 1 hour after nerve transection and followed for 3 days) groups. Spinal cord segments of the sciatic nerve and related dorsal root ganglions were removed four weeks after nerve transection for the assessment of malondialdehyde (MDA) levels, superoxide dismutase (SOD) and catalase (CAT) activities, immunohistochemistry of caspase-3, cyclooxygenase-2 (COX-2), S100beta (S100B), and terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL). MDA levels were significantly decreased, and SOD and CAT activities were significantly increased in EGCG-treated rats after nerve transection. Attenuated caspase-3 and COX-2 expression, and TUNEL reaction could be significantly detected in the EGCG-treated rats after nerve transection. Also, EGCG significantly increased S100B expression. We propose that EGCG may be effective in the protection of neuronal cells against retrograde apoptosis and may enhance neuronal survival time following nerve transection.

Relative spatial soil geochemical variability along two transects across the United States and Canada

USGS Publications Warehouse

Garrett, Robert G.

2009-01-01

The patterns of relative variability differ by transect and horizon. The N–S transect A-horizon soils show significant between-40-km scale variability for 29 elements, with only 4 elements (Ca, Mg, Pb and Sr) showing in excess of 50% of their variability at the within-40-km and ‘at-site’ scales. In contrast, the C-horizon data demonstrate significant between-40-km scale variability for 26 elements, with 21 having in excess of 50% of their variability at the within-40-km and ‘at-site’ scales. In 36 instances, the ‘at-site’ variability is statistically significant in terms of the sample preparation and analysis variability. It is postulated that this contrast between the A- and C- horizons along the N–S transect, that is dominated by agricultural land uses, is due to the local homogenization of Ap-horizon soils by tillage reducing the ‘at-site’ variability. The spatial variability is distributed similarly between scales for the A- and C-horizon soils of the E–W transect. For all elements, there is significant variability at the within-40-km scale. Notwithstanding this, there is significant between-40-km variability for 28 and 20 of the elements in the A- and C-horizon data, respectively. The differences between the two transects are attributed to (1) geology, the N–S transect runs generally parallel to regional strikes, whereas the E–W transect runs across regional structures and lithologies; and (2) land use, with agricultural tillage dominating along the N–S transect. The spatial analysis of the transect data indicates that continental-scale maps demonstrating statistically significant patterns of geochemical variability may be prepared for many elements from data on soil samples collected on a 40 x 40 km grid or similar sampling designs resulting in a sample density of 1 site per 1600 km2.

Hypothalamic network for thermoregulatory shivering.

PubMed

Kanosue, K; Zhang, Y H; Yanase-Fujiwara, M; Hosono, T

1994-07-01

Warming one side of a rat's preoptic area and anterior hypothalamus (POAH) suppresses shivering on both sides of the body, and the present study evaluated the extent to which signals mediating this suppression cross the midline within and below the POAH. Hind paw shivering during unilateral POAH thermal stimulation was measured for rats in which the POAH had been midsagittally transected and for rats in which one side of the hypothalamus had been coronally transected just caudal to the POAH. In midsagittally transected rats, unilateral warming on either side of the POAH suppressed shivering equally on both sides of the body. In unilaterally transected rats, POAH warming on the transected side did not affect shivering, but warming the intact side suppressed shivering equally on both sides of the body. When a unilateral transection of only the lateral part of the hypothalamus included the medial forebrain bundle, the effect was the same as that of a unilateral transection of the whole hypothalamus. These results indicate that no information controlling shivering is exchanged between the left and right POAH and that efferent signals from the POAH, descending through the medial forebrain bundle, cross the midline somewhere below the hypothalamus to innervate both sides of the body equally.

Lead burdens and behavioral impairments of the lined shore crab Pachygrapsus crassipes

USGS Publications Warehouse

Hui, Clifford A.

2002-01-01

Unless a correction is made, population estimates derived from a sample of belt transects will be biased if a fraction of, the individuals on the sample transects are not counted. An approach, useful for correcting this bias when sampling immotile populations using transects of a fixed width, is presented. The method assumes that a searcher's ability to find objects near the center of the transect is nearly perfect. The method utilizes a mathematical equation, estimated from the data, to represent the searcher's inability to find all objects at increasing distances from the center of the transect. An example of the analysis of data, formation of the equation, and application is presented using waterfowl nesting data collected in Colorado.

A line transect model for aerial surveys

USGS Publications Warehouse

Quang, Pham Xuan; Lanctot, Richard B.

1991-01-01

We employ a line transect method to estimate the density of the common and Pacific loon in the Yukon Flats National Wildlife Refuge from aerial survey data. Line transect methods have the advantage of automatically taking into account “visibility bias” due to detectability difference of animals at different distances from the transect line. However, line transect methods must overcome two difficulties when applied to inaccurate recording of sighting distances due to high travel speeds, so that in fact only a few reliable distance class counts are available. We propose a unimodal detection function that provides an estimate of the effective area lost due to the blind strip, under the assumption that a line of perfect detection exists parallel to the transect line. The unimodal detection function can also be applied when a blind strip is absent, and in certain instances when the maximum probability of detection is less than 100%. A simple bootstrap procedure to estimate standard error is illustrated. Finally, we present results from a small set of Monte Carlo experiments.

How many fish? Comparison of two underwater visual sampling methods for monitoring fish communities

PubMed Central

Sini, Maria; Vatikiotis, Konstantinos; Katsoupis, Christos

2018-01-01

Background Underwater visual surveys (UVSs) for monitoring fish communities are preferred over fishing surveys in certain habitats, such as rocky or coral reefs and seagrass beds and are the standard monitoring tool in many cases, especially in protected areas. However, despite their wide application there are potential biases, mainly due to imperfect detectability and the behavioral responses of fish to the observers. Methods The performance of two methods of UVSs were compared to test whether they give similar results in terms of fish population density, occupancy, species richness, and community composition. Distance sampling (line transects) and plot sampling (strip transects) were conducted at 31 rocky reef sites in the Aegean Sea (Greece) using SCUBA diving. Results Line transects generated significantly higher values of occupancy, species richness, and total fish density compared to strip transects. For most species, density estimates differed significantly between the two sampling methods. For secretive species and species avoiding the observers, the line transect method yielded higher estimates, as it accounted for imperfect detectability and utilized a larger survey area compared to the strip transect method. On the other hand, large-scale spatial patterns of species composition were similar for both methods. Discussion Overall, both methods presented a number of advantages and limitations, which should be considered in survey design. Line transects appear to be more suitable for surveying secretive species, while strip transects should be preferred at high fish densities and for species of high mobility. PMID:29942703

Assessing freshwater habitat of adult anadromous alewives using multiple approaches

USGS Publications Warehouse

Mather, Martha E.; Frank, Holly J.; Smith, Joseph M.; Cormier, Roxann D.; Muth, Robert M.; Finn, John T.

2012-01-01

After centuries of disturbance, environmental professionals now recognize the need to restore coastal watersheds for native fish and protect the larger ecosystems on which fish and other aquatic biota depend. Anadromous fish species are an important component of coastal ecosystems that are often adversely affected by human activities. Restoring native anadromous fish species is a common focus of both fish and coastal watershed restoration. Yet restoration efforts have met with uneven success, often due to lack of knowledge about habitat availability and use. Using habitat surveys and radio tracking of adult anadromous alewives Alosa pseudoharengus during their spring spawning migration, we illustrate a method for quantifying habitat using multiple approaches and for relating mobile fish distribution to habitat. In the Ipswich River, Massachusetts, measuring habitat units and physical conditions at transects (width, depth, and velocity) provided an ecological basis for the interpretation of landscape patterns of fish distribution. Mapping habitat units allowed us to efficiently census habitat relevant to alewives for the entire 20.6 river kilometers of interest. Our transect data reinforced the results of the habitat unit survey and provided useful, high‐resolution ecological data for restoration efforts. Tagged alewives spent little time in riffle–run habitats and substantial time in pools, although the locations of pool occupancy varied. The insights we provide here can be used to (1) identify preferred habitats into which anadromous fish can be reintroduced in order to maximize fish survival and reproduction and (2) pinpoint habitat types in urgent need of protection or restoration.

Pollution over Megacity Regions from the Tropospheric Emission Spectrometer (TES)

NASA Astrophysics Data System (ADS)

Cady-Pereira, K. E.; Payne, V.; Hegarty, J. D.; Luo, M.; Bowman, K. W.; Millet, D. B.

2015-12-01

The world's megacities, defined as urban areas with over 10 million people, are growing rapidly in population and increasing in number, as the migration from rural to urban areas continues. This rapid growth brings economic opportunities but also exacts costs, such as traffic congestion, inadequate sanitation and poor air quality. Monitoring air quality has become a priority for many regional governments, as they seek to understand the sources and distribution of the species contributing to the local pollution. Hyperspectral infrared instruments orbiting the Earth can measure many of these species simultaneously, and since they measure averages over their footprints, they are less sensitive to proximity to strong point sources than in situ measurements, and thus provide a more regional perspective. The JPL TES team has selected a number of megacities as Special Observation targets. These observations, or transects, are sets of 20 closely spaced (12 km apart) TES observations carried out every sixteen days. We will present the TES ozone (O3), peroxyacetyl nitrate (PAN), ammonia (NH3), formic acid (HCOOH) and methanol (CH3OH) data collected over Mexico City, Lagos (Nigeria) and Los Angeles from 2013 through 2015, and illustrate how the seasonality in the TES measurements is related to local emissions, biomass burning and regional circulation patterns, and we will reinforce our arguments with MODIS AOD and TES CO data. One of the transects over Mexico City in October demonstrates very nicely the synergy obtained from simultaneous measurements of multiple trace species. We will also discuss the spatial variability along the transects and how it is related to topography and land use.

Exercise induces cortical plasticity after neonatal spinal cord injury in the rat

PubMed Central

Kao, T; Shumsky, JS; Murray, M; Moxon, KA

2009-01-01

Exercise-induced cortical plasticity is associated with improved functional outcome after brain or nerve injury. Exercise also improves functional outcomes after spinal cord injury, but its effects on cortical plasticity are not known. The goal of this investigation was to study the effect of moderate exercise (treadmill locomotion, 3 min/day, 5days/week) on the somatotopic organization of forelimb and hindlimb somatosensory cortex (SI) after neonatal thoracic transection. We used adult rats spinalized as neonates because some of these animals develop weight-supported stepping and, therefore, the relationship between cortical plasticity and stepping could also be examined. Acute, single-neuron mapping was used to determine the percentage of cortical cells responding to cutaneous forelimb stimulation in normal, spinalized, and exercised spinalized rats. Multiple single neuron recording from arrays of chronically implanted microwires examined the magnitude of response of these cells in normal and exercised spinalized rats. Our results show that exercise not only increased the percentage of responding cells in the hindlimb SI, but also increased the magnitude of the response of these cells. This increase in response magnitude was correlated with behavioral outcome measures. In the forelimb SI, neonatal transection reduced the percentage of responding cells to forelimb stimulation but exercise reversed this loss. This restoration in the percentage of responding cells after exercise was accompanied by an increase in their response magnitude. Therefore, the increase in responsiveness of hindlimb SI to forelimb stimulation after neonatal transection and exercise may be due, in part, to the effect of exercise on the forelimb SI. PMID:19515923

Use of paper for treatment of a peripheral nerve trauma in the rat.

PubMed

Kauppila, T; Jyväsjärvi, E; Murtomäki, S; Mansikka, H; Pertovaara, A; Virtanen, I; Liesi, P

1997-09-29

Reinnervation of the muscles and skin in the rat hindpaw was studied after transection and attempted repair of the sciatic nerve. Reconnecting the transected nerve with lens cleaning paper was at least as effective in rejoining the transected nerves as traditional microsurgical neurorraphy. Paper induced a slightly bigger fibrous scar around the site of transection than neurorraphy, but this scar did not cause impairment of functional recovery or excessive signs of neuropathic pain. We conclude that a paper graft can be used in restorative surgery of severed peripheral nerves.

Line transect estimation of population size: the exponential case with grouped data

USGS Publications Warehouse

Anderson, D.R.; Burnham, K.P.; Crain, B.R.

1979-01-01

Gates, Marshall, and Olson (1968) investigated the line transect method of estimating grouse population densities in the case where sighting probabilities are exponential. This work is followed by a simulation study in Gates (1969). A general overview of line transect analysis is presented by Burnham and Anderson (1976). These articles all deal with the ungrouped data case. In the present article, an analysis of line transect data is formulated under the Gates framework of exponential sighting probabilities and in the context of grouped data.

Restoration of motor function after operative reconstruction of the acutely transected spinal cord in the canine model.

PubMed

Liu, Zehan; Ren, Shuai; Fu, Kuang; Wu, Qiong; Wu, Jun; Hou, Liting; Pan, Hong; Sun, Linlin; Zhang, Jian; Wang, Bingjian; Miao, Qing; Sun, Guiyin; Bonicalzi, Vincenzo; Canavero, Sergio; Ren, Xiaoping

2018-05-01

Cephalosomatic anastomosis or what has been called a "head transplantation" requires full reconnection of the respective transected ends of the spinal cords. The GEMINI spinal cord fusion protocol has been developed for this reason. Here, we report the first randomized, controlled study of the GEMINI protocol in large animals. We conducted a randomized, controlled study of a complete transection of the spinal cord at the level of T10 in dogs at Harbin Medical University, Harbin, China. These dogs were followed for up to 8 weeks postoperatively by assessments of recovery of motor function, somato-sensory evoked potentials, and diffusion tensor imaging using magnetic resonance imaging. A total of 12 dogs were subjected to operative exposure of the dorsal aspect of the spinal cord after laminectomy and longitudinal durotomy followed by a very sharp, controlled, full-thickness, complete transection of the spinal cord at T10. The fusogen, polyethylene glycol, was applied topically to the site of the spinal cord transection in 7 of 12 dogs; 0.9% NaCl saline was applied to the site of transection in the remaining 5 control dogs. Dogs were selected randomly to receive polyethylene glycol or saline. All polyethylene glycol-treated dogs reacquired a substantial amount of motor function versus none in controls over these first 2 months as assessed on the 20-point (0-19), canine, Basso-Beattie-Bresnahan rating scale (P<.006). Somatosensory evoked potentials confirmed restoration of electrical conduction cranially across the site of spinal cord transection which improved over time. Diffusion tensor imaging, a magnetic resonance permutation that assesses the integrity of nerve fibers and cells, showed restitution of the transected spinal cord with polyethylene glycol treatment (at-injury level difference: P<.02). A sharply and fully transected spinal cord at the level of T10 can be reconstructed with restoration of many aspects of electrical continuity in large animals following the GEMINI spinal cord fusion protocol, with objective evidence of motor recovery and of electrical continuity across the site of transection, opening the way to the first cephalosomatic anastomosis. (Surgery 2017;160:XXX-XXX.). Copyright © 2017. Published by Elsevier Inc.

Welfare assessment in broiler farms: transect walks versus individual scoring.

PubMed

Marchewka, J; Watanabe, T T N; Ferrante, V; Estevez, I

2013-10-01

Current scientific approaches to welfare assessment in broilers are based on individual sampling that can be time consuming under field conditions. On the other hand, farmers conduct routine checks based on walks through the house to screen birds' health condition. We adapted the walks through following line transect methodology used in wildlife studies to explore their feasibility as a welfare assessment tool. The aim of this study was to compare broiler welfare assessed by individual sampling and transect walks. We evaluated 6 identically managed flocks. For individual sampling, we collected measures on 150 birds, including weight, breast dirtiness, hock and footpad dermatitis, lameness, and immobility. Transect observations were conducted by slowly walking on randomized paths within each house recording: immobility, lameness, back dirtiness, sickness, agony, and dead. Transect walks allowed detection of small variations (P < 0.003) in the prevalence of most welfare indicators considered with consistency in interobserver reliability (P ≥ 0.05). In addition, assessments across transects were highly consistent (P ≥ 0.05). Individual sampling was also sensitive to differences across houses (P < 0.01) with the exception of immobility (P = 0.783). No differences were found across sampling locations (P ≥ 0.05). However, both methods differed greatly in the frequency of the incidence of the parameters considered. For example, immobility varied from 0.2 ± 0.02% for transect walks to 4 ± 2.3% for individual sampling, whereas lameness varied between 0.8 ± 0.07% and 24.2 ± 4.7% for transect and samplings, respectively. It is possible that the transect approach may have overlooked walking deficiencies because a large number of birds were scored, although if this was the case, the consistency obtained in the scoring across observers and transects would be surprising. Differences may also be related to possibly biased individual sampling procedures, where less mobile and passive individuals may be more likely to be caught. Furthermore the procedure may cause fatigue and fear reactions reducing mobility. Current study provides new insights into constraints and advantages of broiler on-farm assessment methods, which should be considered for designing on-farm welfare assessment protocols.

Ulinastatin attenuates neuropathic pain induced by L5-VRT via the calcineurin/IL-10 pathway.

PubMed

Ouyang, Handong; Nie, Bilin; Wang, Peizong; Li, Qiang; Huang, Wan; Xin, Wenjun; Zeng, Weian; Liu, Xianguo

2016-01-01

Previous studies have shown that ulinastatin, an effective inhibitor of the inflammatory response in clinical applications, can attenuate hyperalgesia in rodents. However, the underlying mechanism remains unclear. In the present study, we first examined the change in the calcineurin level, which plays an important role in regulating cytokine release in the nervous system, following lumbar 5 ventral root transection in the rat. Furthermore, we determined whether intraperitoneal (i.p.) injection of ulinastatin attenuated pain behavior via inhibition of the calcineurin-mediated inflammatory response induced by lumbar 5 ventral root transection. The results showed that the paw withdrawal threshold and paw withdrawal latency were significantly decreased following lumbar 5 ventral root transection compared to the sham group. Neuropathic pain induced by lumbar 5 ventral root transection significantly decreased the expression of calcineurin in the DRG, and calcineurin was mostly located with NF-200-positive cells, IB4-positive cells, and CGRP-positive cells and less with GFAP-positive satellite cells. Furthermore, intrathecal (i.t.) injection of exogenous calcineurin attenuated the pain behavior induced by lumbar 5 ventral root transection. Importantly, intraperitoneal injection of ulinastatin alleviated the pain behavior and calcineurin downregulation induced by lumbar 5 ventral root transection. Lastly, the cytokine IL-10 was significantly decreased following lumbar 5 ventral root transection, and application of calcineurin (intrathecal) or ulinastatin (intraperitoneal) inhibited the IL-10 downregulation induced by lumbar 5 ventral root transection. These results suggested that ulinastatin, by acting on the CN/IL-10 pathway, might be a novel and effective drug for the treatment of neuropathic pain. © The Author(s) 2016.

Ulinastatin attenuates neuropathic pain induced by L5-VRT via the calcineurin/IL-10 pathway

PubMed Central

Ouyang, Handong; Nie, Bilin; Wang, Peizong; Li, Qiang; Huang, Wan; Xin, Wenjun; Liu, Xianguo

2016-01-01

Previous studies have shown that ulinastatin, an effective inhibitor of the inflammatory response in clinical applications, can attenuate hyperalgesia in rodents. However, the underlying mechanism remains unclear. In the present study, we first examined the change in the calcineurin level, which plays an important role in regulating cytokine release in the nervous system, following lumbar 5 ventral root transection in the rat. Furthermore, we determined whether intraperitoneal (i.p.) injection of ulinastatin attenuated pain behavior via inhibition of the calcineurin-mediated inflammatory response induced by lumbar 5 ventral root transection. The results showed that the paw withdrawal threshold and paw withdrawal latency were significantly decreased following lumbar 5 ventral root transection compared to the sham group. Neuropathic pain induced by lumbar 5 ventral root transection significantly decreased the expression of calcineurin in the DRG, and calcineurin was mostly located with NF-200-positive cells, IB4-positive cells, and CGRP-positive cells and less with GFAP-positive satellite cells. Furthermore, intrathecal (i.t.) injection of exogenous calcineurin attenuated the pain behavior induced by lumbar 5 ventral root transection. Importantly, intraperitoneal injection of ulinastatin alleviated the pain behavior and calcineurin downregulation induced by lumbar 5 ventral root transection. Lastly, the cytokine IL-10 was significantly decreased following lumbar 5 ventral root transection, and application of calcineurin (intrathecal) or ulinastatin (intraperitoneal) inhibited the IL-10 downregulation induced by lumbar 5 ventral root transection. These results suggested that ulinastatin, by acting on the CN/IL-10 pathway, might be a novel and effective drug for the treatment of neuropathic pain. PMID:27175013

Transect versus grid trapping arrangements for sampling small-mammal communities

Treesearch

Dean E. Pearson; Leonard F. Ruggiero

2003-01-01

We compared transect and grid trapping arrangements for assessing small-mammal community composition and relative abundance for 2 years in 2 forest cover types in west-central Montana, USA. Transect arrangements yielded more total captures, more individual captures, and more species than grid arrangements in both cover types in both years. Differences between...

Demonstration of Pelvic Anatomy by Modified Midline Transection that Maintains Intact Internal Pelvic Organs

ERIC Educational Resources Information Center

Steinke, Hanno; Saito, Toshiyuki; Herrmann, Gudrun; Miyaki, Takayoshi; Hammer, Niels; Sandrock, Mara; Itoh, Masahiro; Spanel-Borowski, Katharina

2010-01-01

Gross dissection for demonstrating anatomy of the human pelvis has traditionally involved one of two approaches, each with advantages and disadvantages. Classic hemisection in the median plane through the pelvic ring transects the visceral organs but maintains two symmetric pelvic halves. An alternative paramedial transection compromises one side…

Sediment loads and transport at constructed chutes along the Missouri River - Upper Hamburg Chute near Nebraska City, Nebraska, and Kansas Chute near Peru, Nebraska

USGS Publications Warehouse

Densmore, Brenda K.; Rus, David L.; Moser, Matthew T.; Hall, Brent M.; Andersen, Michael J.

2016-02-04

Comparisons of concentrations and loads from EWI samples collected from different transects within a study site resulted in few significant differences, but comparisons are limited by small sample sizes and large within-transect variability. When comparing the Missouri River upstream transect to the chute inlet transect, similar results were determined in 2012 as were determined in 2008—the chute inlet affected the amount of sediment entering the chute from the main channel. In addition, the Kansas chute is potentially affecting the sediment concentration within the Missouri River main channel, but small sample size and construction activities within the chute limit the ability to fully understand either the effect of the chute in 2012 or the effect of the chute on the main channel during a year without construction. Finally, some differences in SSC were detected between the Missouri River upstream transects and the chute downstream transects; however, the effect of the chutes on the Missouri River main-channel sediment transport was difficult to isolate because of construction activities and sampling variability.

Changes in the structural properties of peripheral nerves after transection.

PubMed

Toby, E B; Meyer, B M; Schwappach, J; Alvine, G

1996-11-01

Changes in peripheral nerve structural properties after transection were measured weekly for 5 weeks in the distal stump of the sciatic nerve in 50 Sprague-Dawley rats. Each week after transection, the distal stump of the transected nerve showed increased stiffness when compared to intact nerves. Linear elastic stiffness reached a maximum at weeks 1 and 2 after transection, when the transected nerves were 15% stiffer than the contralateral control sides. Toughness was also increased and reached a maximum at week 4 with a 50% difference between values for experimental and control sides. Overall failure load was between 21% and 27% greater, peaking at week 3. An increase in stiffness of the distal stump would result in increased tension at the suture line, as the nerve gap is overcome when performing a delayed neurorraphy. These data suggest, with respect to structural properties, that an end-to-end repair should be carried out at the time of injury; after only 1 week, significant stiffness in the distal segment of the nerve developed, which should result in an increase in tension at the repair site.

Gravity constraints on the geometry of the Big Bend of the San Andreas Fault in the southern Carrizo Plains and Pine Mountain egion

NASA Astrophysics Data System (ADS)

Altintas, Ali Can

The goal of this project is to combine gravity measurements with geologic observations to better understand the "Big Bend" of the San Andreas Fault (SAF) and its role in producing hydrocarbon-bearing structures in the southern Central Valley of California. The SAF is the main plate boundary structure between the Pacific and North American plates and accommodates ?35 mm/yr of dextral motion. The SAF can be divided into three main parts: the northern, central and southern segments. The boundary between the central and southern segments is the "Big Bend", which is characterized by an ≈30°, eastward bend. This fault curvature led to the creation of a series of roughly east-west thrust faults and the transverse mountain ranges. Four high-resolution gravity transects were conducted across locations on either side of the bend. A total of 166 new gravity measurements were collected. Previous studies suggest significantly inclined dip angle for the San Andreas Fault in the Big Bend area. Yet, our models indicate that the San Andreas Fault is near vertical in the Big Bend area. Also gravity cross-section models suggest that flower structures occur on either side of the bend. These structures are dominated by sedimentary rocks in the north and igneous rocks in the south. The two northern transects in the Carrizo plains have an ≈-70 mgal Bouguer anomaly. The SAF has a strike of ≈315° near these transects. The northern transects are characterized by multiple fault strands which cut marine and terrestrial Miocene sedimentary rocks as well as Quaternary alluvial valley deposits. These fault strands are characterized by ?6 mgal short wavelength variations in the Bouguer gravity anomaly, which correspond to low density fault gouge and fault splays that juxtapose rocks of varying densities. The southern transects cross part of the SAF with a strike of 285°, have a Bouguer anomaly of ≈-50 mgal and are characterized by a broad 15 mgal high. At this location the rocks on either side of the fault are Proterozoic - Cretaceous metamorphic or/and plutonic rocks. Previous work based on geologic mapping hypothesized the existence of a shallow, low angle Abel Mountain Thrust in which crystalline rocks were thrust over Miocene sedimentary rocks, near Apache Saddle. However, gravity models indicate the crystalline rocks are vertically extensive and form a positive flower structure bounded by high angle faults. Also, based on the thickness of fault adjacent sedimentary cover, the gravity models suggest a minimum exhumation of 5-6 km for crystalline rocks in the south. Assuming exhumation began with the switch from the transtensional San Gabriel Fault to transpressional San Andreas Fault at approximately 5 Ma, this indicates exhumation rates of 1 km/Ma. Overall, the broad gravity highs observed along the southern transects are due to uplift of basement rocks in this area.

Soil Biogeochemical and Microbial Feedbacks along a Snowmelt-Dominated Hillslope-to-Floodplain Transect in Colorado.

NASA Astrophysics Data System (ADS)

Sorensen, P.; Beller, H. R.; Bill, M.; Bouskill, N.; Brodie, E.; Chakraborty, R.; Conrad, M. E.; Karaoz, U.; Polussa, A.; Steltzer, H.; Wang, S.; Williams, K. H.; Wilmer, C.; Wu, Y.

2017-12-01

Nitrogen export from mountainous watersheds is a product of multiple interactions among hydrological processes and soil-microbial-plant feedbacks along the continuum from terrestrial to aquatic environments. In snow-dominated systems, like the East River Watershed (CO), seasonal processes such as snowmelt exert significant influence on the annual hydrologic cycle and may also link spatially distinct catchment subsystems, such as hillslope and adjoining riparian floodplains. Further, snowmelt is occurring earlier each year and this is predicted to result in a temporal asynchrony between historically coupled microbial nutrient release and plant nutrient demand in spring, with the potential to increase N export from the East River Watershed. Here we summarize biogeochemical data collected along a hillslope-to-riparian floodplain transect at the East River site. Starting in Fall 2016, we sampled soils at 3 depths and measured dissolved pools of soil nutrients (e.g., NH4+, NO3-, DOC, P), microbial biomass CN, and microbial community composition over a seasonal time course, through periods of snow accumulation, snowmelt, and plant senescence. Soil moisture content in the top 5 cm of floodplain soils was nearly 4X greater across sampling dates, coinciding with 2X greater microbial biomass C, larger extractable pools of NH4+, and smaller pools of NO3- in floodplain vs. hillslope soils. These results suggest that microbially mediated redox processes played an important role in N cycling along the transect. Hillslope vs. floodplain location also appeared to be a key factor that differentiated soil microbial communities (e.g., a more important factor than seasonality or soil depth or type). Snow accumulation and snowmelt exerted substantial influence on soil biogeochemistry. For example, microbial biomass accumulation increased about 2X beneath the winter snowpack. Snowmelt resulted in a precipitous crash in the microbial population, with 2.5X reductions in floodplain and 2X reductions in hillslope soils. Immediately following snowmelt, NO3- concentrations in soil porewater and soil extracts increased dramatically. Overall, these results suggest that N export is strongly influenced by distinct soil biogeochemical and microbiological patterns along hillslope-to-floodplain transects at East River.

A log-linear model approach to estimation of population size using the line-transect sampling method

USGS Publications Warehouse

Anderson, D.R.; Burnham, K.P.; Crain, B.R.

1978-01-01

The technique of estimating wildlife population size and density using the belt or line-transect sampling method has been used in many past projects, such as the estimation of density of waterfowl nestling sites in marshes, and is being used currently in such areas as the assessment of Pacific porpoise stocks in regions of tuna fishing activity. A mathematical framework for line-transect methodology has only emerged in the last 5 yr. In the present article, we extend this mathematical framework to a line-transect estimator based upon a log-linear model approach.

Spatial patterns of bee captures in North American bowl trapping surveys

USGS Publications Warehouse

Droege, Sam; Tepedino, Vincent J.; Lebuhn, Gretchen; Link, William; Minckley, Robert L.; Chen, Qian; Conrad, Casey

2010-01-01

1. Bowl and pan traps are now commonly used to capture bees (Hymenoptera: Apiformes) for research and surveys. 2. Studies of how arrangement and spacing of bowl traps affect captures of bees are needed to increase the efficiency of this capture technique. 3. We present results from seven studies of bowl traps placed in trapping webs, grids, and transects in four North American ecoregions (Mid-Atlantic, Coastal California, Chihuahuan Desert, and Columbia Plateau). 4. Over 6000 specimens from 31 bee genera were captured and analysed across the studies. 5. Based on the results from trapping webs and distance tests, the per bowl capture rate of bees does not plateau until bowls are spaced 3–5 m apart. 6. Minor clumping of bee captures within transects was detected, with 26 of 56 transects having index of dispersion values that conform to a clumped distribution and 39 transects having positive Green's index values, 13 with zero, and only four negative. However, degree of clumping was slight with an average value of only 0.06 (the index ranges from -1 to 1) with only five values >0.15. Similarly, runs tests were significant for only 5.9% of the transects. 7. Results indicate that (i) capture rates are unaffected by short distances between bowls within transects and (ii) that bowls and transects should be dispersed throughout a study site.

Recovery of bimodal locomotion in the spinal-transected salamander, Pleurodeles waltlii.

PubMed

Chevallier, Stéphanie; Landry, Marc; Nagy, Frédéric; Cabelguen, Jean-Marie

2004-10-01

Electromyographic (EMG) analysis was used to provide an assessment of the recovery of locomotion in spinal-transected adult salamanders (Pleurodeles waltlii). EMG recordings were performed during swimming and overground stepping in the same animal before and at various times (up to 500 days) after a mid-trunk spinalization. Two-three weeks after spinalization, locomotor EMG activity was limited to the forelimbs and the body rostral to the transection. Thereafter, there was a return of the locomotor EMG activity at progressively more caudal levels below the transection. The animals reached stable locomotor patterns 3-4 months post-transection. Several locomotor parameters (cycle duration, burst duration, burst proportion, intersegmental phase lag, interlimb coupling) measured at various recovery times after spinalization were compared with those in intact animals. These comparisons revealed transient and long-term alterations in the locomotor parameters both above and below the transection site. These alterations were much more pronounced for swimming than for stepping and revealed differences in adaptive plasticity between the two locomotor networks. Recovered locomotor activity was immediately abolished by retransection at the site of the original spinalization, suggesting that the spinal cord caudal to the transection was reinnervated by descending brain and/or propriospinal axons, and that this regeneration contributed to the restoration of locomotor activity. Anatomical studies conducted in parallel further demonstrated that some of the regenerated axons came from glutamatergic and serotoninergic immunoreactive cells within the reticular formation.

A New Sample Transect through the Sierra Madre Occidental Silicic Large Igneous Province in Southern Chihuahua State, Mexico: First Stratigraphic, Petrologic, and Geochemical Results

NASA Astrophysics Data System (ADS)

Andrews, G. D.; Davila Harris, P.; Brown, S. R.; Anderson, L.; Moreno, N.

2014-12-01

We completed a field sampling transect across the northern Sierra Madre Occidental silicic large igneous province (SMO) in December 2013. Here we present the first stratigraphic, petrological, and geochemical data from the transect between Hidalgo del Parral and Guadalupe y Calvo, Chihuahua, Mexico. This is the first new transect across the SMO in 25 years and the only one between existing NE - SW transects at Chihuahua - Hermosillo and Durango - Mazatlan. The 245 km-long transect along Mexican Highway 24 crosses the boundary between the extended (Basin and Range) and non-extended (Sierra Madre Occidental plateau) parts of the SMO, and allows sampling of previously undescribed Oligocene (?) - early Miocene (?) rhyolitic ignimbrites and lavas, and occasional post-rhyolite, Miocene (?) SCORBA basaltic andesite lavas. 54 samples of rhyolitic ignimbrites (40) and lavas (7), and basaltic andesite lavas (7) were sampled along the transect, including 8 canyon sections with more than one unit. The ignimbrites are overwhelming rhyodacitic (plagioclase and hornblende or biotite phyric) or rhyolitic (quartz (+/- sanidine) in additon to plagioclase and hornblende or biotite phyric) and sparsely to highly phyric. Preliminary petrographic (phenocryst abundances) and geochemical (major and trace element) will be presented and compared to existing data from elsewhere in the SMO. Future work will include U-Pb zircon dating and whole rock and in-zircon radiogenic isotopes analyses.

Swimming behaviour and calcium incorporation into inner ear otoliths of fish after vestibular nerve transection

NASA Astrophysics Data System (ADS)

Edelmann, E.; Anken, R. H.; Rahmann, H.

2004-01-01

Previous investigations on neonate swordtail fish (Xiphophorus helleri) revealed that otolithic calcium incorporation (visualized using the calcium tracer alizarin complexone) and thus otolith growth had ceased after nerve transection, supporting a hypothesis according to which the gravity-dependent otolith growth is regulated neuronally. Subsequent investigations on larval cichlid fish (Oreochromis mossambicus) yielded contrasting results, repeatedly depending on the particular batch of cichlids investigated. Like most neonate swordtails, Type I cichlids revealed a stop of calcium incorporation after unilateral vestibular nerve transection. Their behaviour after transection was normal, and the otolithic calcium incorporation in controls of the same batch was symmetric. In Type II cichlids, however, vestibular nerve transection had no effect on otolithic calcium incorporation. They behaved kinetotically after transection (this kind of kinetosis was qualitatively similar to the swimming behaviour exhibited by larval cichlids during microgravity in the course of parabolic aircraft flights). The otolithic calcium incorporation in control animals was asymmetric. These results show that the effects of vestibular nerve transection as well as the efficacy of the mechanism, which regulates otolith growth/otolithic calcium incorporation, are - depending on the particular batch of animals - genetically predispositioned. In conclusion, the regulation of otolithic calcium incorporation is guided neuronally, in part via the vestibular nerve and, in part, via a further pathway, which remains to be addressed in the course of future investigations.

Swimming Behavior and Calcium Incorporation into inner Ear Otoliths of Fish after vestibular Nerve Transection

NASA Astrophysics Data System (ADS)

Edelmann, E.; Anken, R.; Rahmann, H.

Previous investigations on neonate swordtail fish (Xiphophorus helleri) revealed that otolithic calcium incorporation (visualized using the calcium-tracer alizarin- complexone) and thus otolith growth had ceased after nerve transection, supporting a hypothesis according to which the gravity-dependent otolith growth is regulated neuronally. Subsequent investigations on larval cichlid fish (Oreochromis mossambicus) yielded contrasting results, repeatedly depending on the particular batch of cichlids investigated: Like neonate swordtails, type I cichlids revealed a stop of calcium incorporation after unilateral vestibular nerve transection. Their behaviour after transection was normal and the otolithic calcium incorporation in controls of the same batch was symmetrical. In type II cichlids, however, vestibular nerve transection had no effect on otolithic calcium incorporation. They behaved kinetotically after transection (this kind of kinetosis was qualitatively similar to the swimming behaviour exhibited by larval cichlids during microgravity in the course of parabolic aircraft flights). The otolithic calcium incorporation in control animals was asymmetrical. These results stongly suggest that the effects of vestibular nerve transection as well as the efficacy of the mechanism, which regulates otolith growth/otolithic calcium incorporation, are - depending on the particular batch of animals - genetically predispositioned. Thus, it is assumed that the mechanisms regulating otolith growth and equlibibrium differ in the two types of cichlid fish. This work was financially supported by the German Aerospace Center (DLR) e.V. (FKZ: 50 WB 9997).

Use of the transect method in satellite survey missions with application to the infrared astronomical satellite /IRAS/

NASA Technical Reports Server (NTRS)

Mclaughlin, W. I.; Lundy, S. A.; Ling, H. Y.; Stroberg, M. W.

1980-01-01

The coverage of the celestial sphere or the surface of the earth with a narrow-field instrument onboard a satellite can be described by a set of swaths on the sphere. A transect is a curve on this sphere constructed to sample the coverage. At each point on the transect the number of times that the field-of-view of the instrument has passed over the point is recorded. This information is conveniently displayed as an integer-valued histogram over the length of the transect. The effectiveness of the transect method for a particular observing plan and the best placement of the transects depends upon the structure of the set of observations. Survey missions are usually characterized by a somewhat parallel alignment of the instrument swaths. Using autocorrelation and cross-correlation functions among the histograms the structure of a survey has been analyzed into two components, and each is illustrated by a simple mathematical model. The complex, all-sky survey to be performed by the Infrared Astronomical Satellite (IRAS) is synthesized in some detail utilizing the objectives and constraints of that mission. It is seen that this survey possesses the components predicted by the simple models and this information is useful in characterizing the properties of the IRAS survey and the placement of the transects as a function of celestial latitude and certain structural properties of the coverage.

Strip transect sampling and analysis for avian habitat studies

Treesearch

Richard N. Conner; James G. Dickson

1980-01-01

Censusing procedures that detect effects of habitat treatment on birds are outlined. We suggest that only relative values of bird species diversity, equitability, abundance, and species richness need be obtained. We also suggest that 4, 250-m strip transects per treatment and 8-10 trips over each transect are adequate. Aspects of sampling design that affect within-...

The "Tracked Roaming Transect" and distance sampling methods increase the efficiency of underwater visual censuses.

PubMed

Irigoyen, Alejo J; Rojo, Irene; Calò, Antonio; Trobbiani, Gastón; Sánchez-Carnero, Noela; García-Charton, José A

2018-01-01

Underwater visual census (UVC) is the most common approach for estimating diversity, abundance and size of reef fishes in shallow and clear waters. Abundance estimation through UVC is particularly problematic in species occurring at low densities and/or highly aggregated because of their high variability at both spatial and temporal scales. The statistical power of experiments involving UVC techniques may be increased by augmenting the number of replicates or the area surveyed. In this work we present and test the efficiency of an UVC method based on diver towed GPS, the Tracked Roaming Transect (TRT), designed to maximize transect length (and thus the surveyed area) with respect to diving time invested in monitoring, as compared to Conventional Strip Transects (CST). Additionally, we analyze the effect of increasing transect width and length on the precision of density estimates by comparing TRT vs. CST methods using different fixed widths of 6 and 20 m (FW3 and FW10, respectively) and the Distance Sampling (DS) method, in which perpendicular distance of each fish or group of fishes to the transect line is estimated by divers up to 20 m from the transect line. The TRT was 74% more time and cost efficient than the CST (all transect widths considered together) and, for a given time, the use of TRT and/or increasing the transect width increased the precision of density estimates. In addition, since with the DS method distances of fishes to the transect line have to be estimated, and not measured directly as in terrestrial environments, errors in estimations of perpendicular distances can seriously affect DS density estimations. To assess the occurrence of distance estimation errors and their dependence on the observer's experience, a field experiment using wooden fish models was performed. We tested the precision and accuracy of density estimators based on fixed widths and the DS method. The accuracy of the estimates was measured comparing the actual total abundance with those estimated by divers using FW3, FW10, and DS estimators. Density estimates differed by 13% (range 0.1-31%) from the actual values (average = 13.09%; median = 14.16%). Based on our results we encourage the use of the Tracked Roaming Transect with Distance Sampling (TRT+DS) method for improving density estimates of species occurring at low densities and/or highly aggregated, as well as for exploratory rapid-assessment surveys in which divers could gather spatial ecological and ecosystem information on large areas during UVC.

The "Tracked Roaming Transect" and distance sampling methods increase the efficiency of underwater visual censuses

PubMed Central

2018-01-01

Underwater visual census (UVC) is the most common approach for estimating diversity, abundance and size of reef fishes in shallow and clear waters. Abundance estimation through UVC is particularly problematic in species occurring at low densities and/or highly aggregated because of their high variability at both spatial and temporal scales. The statistical power of experiments involving UVC techniques may be increased by augmenting the number of replicates or the area surveyed. In this work we present and test the efficiency of an UVC method based on diver towed GPS, the Tracked Roaming Transect (TRT), designed to maximize transect length (and thus the surveyed area) with respect to diving time invested in monitoring, as compared to Conventional Strip Transects (CST). Additionally, we analyze the effect of increasing transect width and length on the precision of density estimates by comparing TRT vs. CST methods using different fixed widths of 6 and 20 m (FW3 and FW10, respectively) and the Distance Sampling (DS) method, in which perpendicular distance of each fish or group of fishes to the transect line is estimated by divers up to 20 m from the transect line. The TRT was 74% more time and cost efficient than the CST (all transect widths considered together) and, for a given time, the use of TRT and/or increasing the transect width increased the precision of density estimates. In addition, since with the DS method distances of fishes to the transect line have to be estimated, and not measured directly as in terrestrial environments, errors in estimations of perpendicular distances can seriously affect DS density estimations. To assess the occurrence of distance estimation errors and their dependence on the observer’s experience, a field experiment using wooden fish models was performed. We tested the precision and accuracy of density estimators based on fixed widths and the DS method. The accuracy of the estimates was measured comparing the actual total abundance with those estimated by divers using FW3, FW10, and DS estimators. Density estimates differed by 13% (range 0.1–31%) from the actual values (average = 13.09%; median = 14.16%). Based on our results we encourage the use of the Tracked Roaming Transect with Distance Sampling (TRT+DS) method for improving density estimates of species occurring at low densities and/or highly aggregated, as well as for exploratory rapid-assessment surveys in which divers could gather spatial ecological and ecosystem information on large areas during UVC. PMID:29324887

Determining Optimal Location and Numbers of Sample Transects for Characterization of UXO Sites

DOE Office of Scientific and Technical Information (OSTI.GOV)

BILISOLY, ROGER L.; MCKENNA, SEAN A.

2003-01-01

Previous work on sample design has been focused on constructing designs for samples taken at point locations. Significantly less work has been done on sample design for data collected along transects. A review of approaches to point and transect sampling design shows that transects can be considered as a sequential set of point samples. Any two sampling designs can be compared through using each one to predict the value of the quantity being measured on a fixed reference grid. The quality of a design is quantified in two ways: computing either the sum or the product of the eigenvalues ofmore » the variance matrix of the prediction error. An important aspect of this analysis is that the reduction of the mean prediction error variance (MPEV) can be calculated for any proposed sample design, including one with straight and/or meandering transects, prior to taking those samples. This reduction in variance can be used as a ''stopping rule'' to determine when enough transect sampling has been completed on the site. Two approaches for the optimization of the transect locations are presented. The first minimizes the sum of the eigenvalues of the predictive error, and the second minimizes the product of these eigenvalues. Simulated annealing is used to identify transect locations that meet either of these objectives. This algorithm is applied to a hypothetical site to determine the optimal locations of two iterations of meandering transects given a previously existing straight transect. The MPEV calculation is also used on both a hypothetical site and on data collected at the Isleta Pueblo to evaluate its potential as a stopping rule. Results show that three or four rounds of systematic sampling with straight parallel transects covering 30 percent or less of the site, can reduce the initial MPEV by as much as 90 percent. The amount of reduction in MPEV can be used as a stopping rule, but the relationship between MPEV and the results of excavation versus no-further-action decisions is site specific and cannot be calculated prior to the sampling. It may be advantageous to use the reduction in MPEV as a stopping rule for systematic sampling across the site that can then be followed by focused sampling in areas identified has having UXO during the systematic sampling. The techniques presented here provide answers to the questions of ''Where to sample?'' and ''When to stop?'' and are capable of running in near real time to support iterative site characterization campaigns.« less

Can roads be used as transects for primate population surveys?.

PubMed

Hilário, Renato R; Rodrigues, Flávio H G; Chiarello, Adriano G; Mourthé, Italo

2012-01-01

Line transect distance sampling (LTDS) can be applied to either trails or roads. However, it is likely that sampling along roads might result in biased density estimates. In this paper, we compared the results obtained with LTDS applied on trails and roads for two primate species (Callithrix penicillata and Callicebus nigrifrons) to clarify whether roads are appropriate transects to estimate densities. We performed standard LTDS surveys in two nature reserves in south-eastern Brazil. Effective strip width and population density were different between trails and roads for C. penicillata, but not for C. nigrifrons. The results suggest that roads are not appropriate for use as transects in primate surveys, at least for some species. Further work is required to fully understand this issue, but in the meantime we recommend that researchers avoid using roads as transects or treat roads and trails as covariates when sampling on roads is unavoidable. Copyright © 2012 S. Karger AG, Basel.

Trail Transect: A Method for Documenting Trail Changes

Treesearch

R.E. Leonard; A.M. Whitney

1977-01-01

A trail transect that documents trail conditions and changes in trails has been used successfully over the past 3 years to measure soil loss, and changes in trail width and vegetation. The system also can be used to study the relationship between trail degradation and the physical characteristics of the site. Data from trail transects can be useful in determining the...

Evaluation of Meniscal Mechanics and Proteoglycan Content in a Modified Anterior Cruciate Ligament Transection Model

PubMed Central

Fischenich, Kristine M.; Coatney, Garrett A.; Haverkamp, John H.; Button, Keith D.; DeCamp, Charlie; Haut, Roger C.; Haut Donahue, Tammy L.

2014-01-01

Post-traumatic osteoarthritis (PTOA) develops as a result of traumatic loading that causes tears of the soft tissues in the knee. A modified transection model, where the anterior cruciate ligament (ACL) and both menisci were transected, was used on skeletally mature Flemish Giant rabbits. Gross morphological assessments, elastic moduli, and glycosaminoglycan (GAG) coverage of the menisci were determined to quantify the amount of tissue damage 12 weeks post injury. This study is one of the first to monitor meniscal changes after inducing combined meniscal and ACL transections. A decrease in elastic moduli as well as a decrease in GAG coverage was seen. PMID:24749144

Integration of potential-field and digital geologic data for two North American geoscience transects

USGS Publications Warehouse

Phillips, J.D.

1990-01-01

Two North American contributions to the Global Geoscience Transects Program, the Quebec-Maine-Gulf of Maine transect and the Great Lakes portion of the United States-Canadian Border transect, are among the first to produce digital geology in a form that can be combined with gridded gravity and aeromagnetic data. Maps of shaded relief and color-composite bandpass-filtered potential-field data combined with overlays of digitized geologic contacts and faults reveal significant new geologic information, including the relative thickness of plutons, the structure of poorly exposed or concealed magnetic units, and possible evidence for mineralized ground. -from Author

Seismic structure from multi-channel seismic reflection and wide-angle data of Transect 0E in the Southern Gulf of California

NASA Astrophysics Data System (ADS)

Paramo, P.; Holbrook, W.; Brown, H.; Lizarralde, D.; Fletcher, J.; Umhoefer, P.; Kent, G.; Harding, A.; Gonzalez, A.; Axen, G.

2005-12-01

We present a velocity model from wide-angle data along with coincident prestack depth migration sections from seismic reflection data collected in the southern Gulf of California. Transect 0E runs NE to SW from the hills of Sierra Madre in mainland Mexico near Mazatlan to approximately 115 km into Gulf of California waters. Wide-angle data were recorded by 9 ocean bottom seismometers, deployed by the R/V New Horizon and 10 Reftek seismometers located along onshore extension of the transect. The average spacing for the OBS and Refteks is ~12 km and shots were fired from the R/V Maurice Ewing at 150 m intervals. Transect 0E crosses what it is believed to be extended continental crust and lies in the initial direction of extension characteristic of the proto-gulf. Preliminary results from the velocity model show upper crustal velocities of 6.1-6.3 km/s and lower crustal velocities of 6.7-7.0 km/s along the entire transect. Seismic velocities and crustal thicknesses observed along transect 0E are characteristic of non-volcanic margins.

The influence of particle concentration and composition on the fractionation of 210Po and 210Pb along the North Atlantic GEOTRACES transect GA03

NASA Astrophysics Data System (ADS)

Tang, Yi; Stewart, Gillian; Lam, Phoebe J.; Rigaud, Sylvain; Church, Thomas

2017-10-01

The disequilibrium between 210Po and 210Pb has been used as a proxy for the particle flux from the upper ocean. The particle concentration and composition effect on the partitioning behavior of 210Po and 210Pb is, however, still unclear. Here, we investigate this association by comparing dissolved (< 0.45 μm) and particulate (small: 1-51 μm; large: > 51 μm) 210Po and 210Pb activity with size-fractionated major particle concentration and composition data from the US GEOTRACES GA03 zonal transect cruises. We observed inverse relationships between partition coefficients (Kd) for the radionuclides and the concentration of suspended particulate matter (SPM) in the water column, known as the ;particle concentration effect.; We examined the relationships between 210Po, 210Pb, and particle composition in the top 500 m by using Pearson pairwise correlations for individual phases and principal components analysis (PCA) for variations among multiple phases. In addition to these analyses, an end-member mixing model was developed to estimate Kd for 210Po and 210Pb in the small particulate size fraction from the compositional phases. The model predicted the range of observed Kd(Pb) well, but was unable to predict the observed Kd(Po) as consistently, possibly because of the bio-reactive nature of 210Po. Despite this, we found a strong relationship between 210Po and both CaCO3 and POM, as well as between 210Pb and both opal and lithogenic phases. All of our analyses demonstrated that the fractionation of 210Po and 210Pb differed between the margins and open ocean along the GA03 transect.

Comparison of Relative Bias, Precision, and Efficiency of Sampling Methods for Natural Enemies of Soybean Aphid (Hemiptera: Aphididae).

PubMed

Bannerman, J A; Costamagna, A C; McCornack, B P; Ragsdale, D W

2015-06-01

Generalist natural enemies play an important role in controlling soybean aphid, Aphis glycines (Hemiptera: Aphididae), in North America. Several sampling methods are used to monitor natural enemy populations in soybean, but there has been little work investigating their relative bias, precision, and efficiency. We compare five sampling methods: quadrats, whole-plant counts, sweep-netting, walking transects, and yellow sticky cards to determine the most practical methods for sampling the three most prominent species, which included Harmonia axyridis (Pallas), Coccinella septempunctata L. (Coleoptera: Coccinellidae), and Orius insidiosus (Say) (Hemiptera: Anthocoridae). We show an important time by sampling method interaction indicated by diverging community similarities within and between sampling methods as the growing season progressed. Similarly, correlations between sampling methods for the three most abundant species over multiple time periods indicated differences in relative bias between sampling methods and suggests that bias is not consistent throughout the growing season, particularly for sticky cards and whole-plant samples. Furthermore, we show that sticky cards produce strongly biased capture rates relative to the other four sampling methods. Precision and efficiency differed between sampling methods and sticky cards produced the most precise (but highly biased) results for adult natural enemies, while walking transects and whole-plant counts were the most efficient methods for detecting coccinellids and O. insidiosus, respectively. Based on bias, precision, and efficiency considerations, the most practical sampling methods for monitoring in soybean include walking transects for coccinellid detection and whole-plant counts for detection of small predators like O. insidiosus. Sweep-netting and quadrat samples are also useful for some applications, when efficiency is not paramount. © The Authors 2015. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

LWD lithostratigraphy, physical properties and correlations across tectonic domains at the NanTroSEIZE drilling transect, Nankai Trough subduction zone, Japan

NASA Astrophysics Data System (ADS)

Tudge, J.; Webb, S. I.; Tobin, H. J.

2013-12-01

Since 2007 the Nankai Trough Seismogenic Zone Experiment (NanTroSEIZE) has drilled a total of 15 sites across the Nankai Trough subduction zone, including two sites on the incoming sediments of the Philippine Sea plate (PSP). Logging-while-drilling (LWD) data was acquired at 11 of these sites encompassing the forearc Kumano Basin, upper accretionary prism, toe region and input sites. Each of these tectonic domains is investigated for changes in physical properties and LWD characteristics, and this work fully integrates a large data set acquired over multiple years and IODP expeditions, most recently Expedition 338. Using the available logging-while-drilling data, primarily consisting of gamma ray, resistivity and sonic velocity, a log-based lithostratigraphy is developed at each site and integrated with the core, across the entire NanTroSEIZE transect. In addition to simple LWD characterization, the use of Iterative Non-hierarchical Cluster Analysis (INCA) on the sites with the full suite of LWD data clearly differentiates the unaltered forearc and slope basin sediments from the deformed sediments of the accretionary prism, suggesting the LWD is susceptible to the subtle changes in the physical properties between the tectonic domains. This differentiation is used to guide the development of tectonic-domain specific physical properties relationships. One of the most important physical property relationships between is the p-wave velocity and porosity. To fully characterize the character and properties of each tectonic domain we develop new velocity-porosity relationships for each domain found across the NanTroSEIZE transect. This allows the porosity of each domain to be characterized on the seismic scale and the resulting implications for porosity and pore pressure estimates across the plate interface fault zone.

Microbial Community and Biochemical Dynamics of Biological Soil Crusts across a Gradient of Surface Coverage in the Central Mojave Desert.

PubMed

Mogul, Rakesh; Vaishampayan, Parag; Bashir, Mina; McKay, Chris P; Schubert, Keith; Bornaccorsi, Rosalba; Gomez, Ernesto; Tharayil, Sneha; Payton, Geoffrey; Capra, Juliana; Andaya, Jessica; Bacon, Leonard; Bargoma, Emily; Black, David; Boos, Katie; Brant, Michaela; Chabot, Michael; Chau, Danny; Cisneros, Jessica; Chu, Geoff; Curnutt, Jane; DiMizio, Jessica; Engelbrecht, Christian; Gott, Caroline; Harnoto, Raechel; Hovanesian, Ruben; Johnson, Shane; Lavergne, Britne; Martinez, Gabriel; Mans, Paul; Morales, Ernesto; Oei, Alex; Peplow, Gary; Piaget, Ryan; Ponce, Nicole; Renteria, Eduardo; Rodriguez, Veronica; Rodriguez, Joseph; Santander, Monica; Sarmiento, Khamille; Scheppelmann, Allison; Schroter, Gavin; Sexton, Devan; Stephenson, Jenin; Symer, Kristin; Russo-Tait, Tatiane; Weigel, Bill; Wilhelm, Mary B

2017-01-01

In this study, we expand upon the biogeography of biological soil crusts (BSCs) and provide molecular insights into the microbial community and biochemical dynamics along the vertical BSC column structure, and across a transect of increasing BSC surface coverage in the central Mojave Desert, CA, United States. Next generation sequencing reveals a bacterial community profile that is distinct among BSCs in the southwestern United States. Distribution of major phyla in the BSC topsoils included Cyanobacteria (33 ± 8%), Proteobacteria (26 ± 6%), and Chloroflexi (12 ± 4%), with Phormidium being the numerically dominant genus. Furthermore, BSC subsurfaces contained Proteobacteria (23 ± 5%), Actinobacteria (20 ± 5%), and Chloroflexi (18 ± 3%), with an unidentified genus from Chloroflexi (AKIW781, order) being numerically dominant. Across the transect, changes in distribution at the phylum ( p < 0.0439) and genus ( p < 0.006) levels, including multiple biochemical and geochemical trends ( p < 0.05), positively correlated with increasing BSC surface coverage. This included increases in (a) Chloroflexi abundance, (b) abundance and diversity of Cyanobacteria, (b) OTU-level diversity in the topsoil, (c) OTU-level differentiation between the topsoil and subsurface, (d) intracellular ATP abundances and catalase activities, and (e) enrichments in clay, silt, and varying elements, including S, Mn, Co, As, and Pb, in the BSC topsoils. In sum, these studies suggest that BSCs from regions of differing surface coverage represent early successional stages, which exhibit increasing bacterial diversity, metabolic activities, and capacity to restructure the soil. Further, these trends suggest that BSC successional maturation and colonization across the transect are inhibited by metals/metalloids such as B, Ca, Ti, Mn, Co, Ni, Mo, and Pb.

Multi-Channel Seismic Images of the Mariana Forearc: EW0202 Initial Results

NASA Astrophysics Data System (ADS)

Oakley, A. J.; Goodliffe, A. M.; Taylor, B.; Moore, G. F.; Fryer, P.

2002-12-01

During the Spring of 2002, the Mariana Subduction Factory was surveyed using multi-channel seismics (MCS) as the first major phase of a US-Japanese collaborative NSF-MARGINS funded project. The resulting geophysical transects extend from the Pacific Plate to the West Mariana remnant arc. For details of this survey, including the results from the back-arc, refer to Taylor et al. (this session). The incoming Pacific Plate and its accompanying seamounts are deformed by plate flexure, resulting in extension of the upper crust as it enters the subduction zone. The resultant trench parallel faults dominate the bathymetry and MCS data. Beneath the forearc, in the southern transects near Saipan, the subducting slab is imaged to a distance of 50-60 km arcward. In addition to ubiquitous trench parallel normal faulting, a N-S transect of the forearc clearly shows normal faults perpendicular to the trench resulting from N-S extension. On the east side of the Mariana Ridge, thick sediment packages extend into the forearc. Directly east of Saipan and Tinian, a large, deeply scouring slide mass is imaged. Several serpentine mud volcanoes (Big Blue, Turquoise and Celestial) were imaged on the Mariana Forearc. Deep horizontal reflectors (likely original forearc crust) are imaged under the flanks of some of these seamounts. A possible "throat" reflector is resolved on multiple profiles at the summit of Big Blue, the northern-most seamount in the study area. The flanks of Turquoise seamount terminate in toe thrusts that represent uplift and rotation of surrounding sediments as the volcano grows outward. These thrusts form a basal ridge around the seamount similar to that previously noted encircling Conical Seamount. Furthermore, MCS data has revealed that some forearc highs previously thought to be fault blocks are in actuality mud volcanoes.

Microbial Community and Biochemical Dynamics of Biological Soil Crusts across a Gradient of Surface Coverage in the Central Mojave Desert

PubMed Central

Mogul, Rakesh; Vaishampayan, Parag; Bashir, Mina; McKay, Chris P.; Schubert, Keith; Bornaccorsi, Rosalba; Gomez, Ernesto; Tharayil, Sneha; Payton, Geoffrey; Capra, Juliana; Andaya, Jessica; Bacon, Leonard; Bargoma, Emily; Black, David; Boos, Katie; Brant, Michaela; Chabot, Michael; Chau, Danny; Cisneros, Jessica; Chu, Geoff; Curnutt, Jane; DiMizio, Jessica; Engelbrecht, Christian; Gott, Caroline; Harnoto, Raechel; Hovanesian, Ruben; Johnson, Shane; Lavergne, Britne; Martinez, Gabriel; Mans, Paul; Morales, Ernesto; Oei, Alex; Peplow, Gary; Piaget, Ryan; Ponce, Nicole; Renteria, Eduardo; Rodriguez, Veronica; Rodriguez, Joseph; Santander, Monica; Sarmiento, Khamille; Scheppelmann, Allison; Schroter, Gavin; Sexton, Devan; Stephenson, Jenin; Symer, Kristin; Russo-Tait, Tatiane; Weigel, Bill; Wilhelm, Mary B.

2017-01-01

In this study, we expand upon the biogeography of biological soil crusts (BSCs) and provide molecular insights into the microbial community and biochemical dynamics along the vertical BSC column structure, and across a transect of increasing BSC surface coverage in the central Mojave Desert, CA, United States. Next generation sequencing reveals a bacterial community profile that is distinct among BSCs in the southwestern United States. Distribution of major phyla in the BSC topsoils included Cyanobacteria (33 ± 8%), Proteobacteria (26 ± 6%), and Chloroflexi (12 ± 4%), with Phormidium being the numerically dominant genus. Furthermore, BSC subsurfaces contained Proteobacteria (23 ± 5%), Actinobacteria (20 ± 5%), and Chloroflexi (18 ± 3%), with an unidentified genus from Chloroflexi (AKIW781, order) being numerically dominant. Across the transect, changes in distribution at the phylum (p < 0.0439) and genus (p < 0.006) levels, including multiple biochemical and geochemical trends (p < 0.05), positively correlated with increasing BSC surface coverage. This included increases in (a) Chloroflexi abundance, (b) abundance and diversity of Cyanobacteria, (b) OTU-level diversity in the topsoil, (c) OTU-level differentiation between the topsoil and subsurface, (d) intracellular ATP abundances and catalase activities, and (e) enrichments in clay, silt, and varying elements, including S, Mn, Co, As, and Pb, in the BSC topsoils. In sum, these studies suggest that BSCs from regions of differing surface coverage represent early successional stages, which exhibit increasing bacterial diversity, metabolic activities, and capacity to restructure the soil. Further, these trends suggest that BSC successional maturation and colonization across the transect are inhibited by metals/metalloids such as B, Ca, Ti, Mn, Co, Ni, Mo, and Pb. PMID:29109701

Mobile acoustic transects miss rare bat species: implications of survey method and spatio-temporal sampling for monitoring bats.

PubMed

Braun de Torrez, Elizabeth C; Wallrichs, Megan A; Ober, Holly K; McCleery, Robert A

2017-01-01

Due to increasing threats facing bats, long-term monitoring protocols are needed to inform conservation strategies. Effective monitoring should be easily repeatable while capturing spatio-temporal variation. Mobile acoustic driving transect surveys ('mobile transects') have been touted as a robust, cost-effective method to monitor bats; however, it is not clear how well mobile transects represent dynamic bat communities, especially when used as the sole survey approach. To assist biologists who must select a single survey method due to resource limitations, we assessed the effectiveness of three acoustic survey methods at detecting species richness in a vast protected area (Everglades National Park): (1) mobile transects, (2) stationary surveys that were strategically located by sources of open water and (3) stationary surveys that were replicated spatially across the landscape. We found that mobile transects underrepresented bat species richness compared to stationary surveys across all major vegetation communities and in two distinct seasons (dry/cool and wet/warm). Most critically, mobile transects failed to detect three rare bat species, one of which is federally endangered. Spatially replicated stationary surveys did not estimate higher species richness than strategically located stationary surveys, but increased the rate at which species were detected in one vegetation community. The survey strategy that detected maximum species richness and the highest mean nightly species richness with minimal effort was a strategically located stationary detector in each of two major vegetation communities during the wet/warm season.

State-space modeling of population sizes and trends in Nihoa Finch and Millerbird

USGS Publications Warehouse

Gorresen, P. Marcos; Brinck, Kevin W.; Camp, Richard J.; Farmer, Chris; Plentovich, Sheldon M.; Banko, Paul C.

2016-01-01

Both of the 2 passerines endemic to Nihoa Island, Hawai‘i, USA—the Nihoa Millerbird (Acrocephalus familiaris kingi) and Nihoa Finch (Telespiza ultima)—are listed as endangered by federal and state agencies. Their abundances have been estimated by irregularly implemented fixed-width strip-transect sampling from 1967 to 2012, from which area-based extrapolation of the raw counts produced highly variable abundance estimates for both species. To evaluate an alternative survey method and improve abundance estimates, we conducted variable-distance point-transect sampling between 2010 and 2014. We compared our results to those obtained from strip-transect samples. In addition, we applied state-space models to derive improved estimates of population size and trends from the legacy time series of strip-transect counts. Both species were fairly evenly distributed across Nihoa and occurred in all or nearly all available habitat. Population trends for Nihoa Millerbird were inconclusive because of high within-year variance. Trends for Nihoa Finch were positive, particularly since the early 1990s. Distance-based analysis of point-transect counts produced mean estimates of abundance similar to those from strip-transects but was generally more precise. However, both survey methods produced biologically unrealistic variability between years. State-space modeling of the long-term time series of abundances obtained from strip-transect counts effectively reduced uncertainty in both within- and between-year estimates of population size, and allowed short-term changes in abundance trajectories to be smoothed into a long-term trend.

Spatial and temporal variability of soil hydraulic properties of topsoil affected by soil erosion

NASA Astrophysics Data System (ADS)

Nikodem, Antonin; Kodesova, Radka; Jaksik, Ondrej; Jirku, Veronika; Klement, Ales; Fer, Miroslav

2014-05-01

This study is focused on the comparison of soil hydraulic properties of topsoil that is affected by erosion processes. In order to include variable morphological and soil properties along the slope three sites - Brumovice, Vidim and Sedlčany were selected. Two transects (A, B) and five sampling sites along each one were chosen. Soil samples were taken in Brumovice after the tillage and sowing of winter wheat in October 2010 and after the wheat harvest in August 2011. At locality Vidim and Sedlčany samples were collected in May and August 2012. Soil hydraulic properties were studied in the laboratory on the undisturbed 100-cm3 soil samples placed in Tempe cells using the multi-step outflow test. Soil water retention data points were obtained by calculating water balance in the soil sample at each pressure head step of the experiment. The single-porosity model in HYDRUS-1D was applied to analyze the multi-step outflow and to obtain the parameters of soil hydraulic properties using the numerical inversion. The saturated hydraulic conductivities (Ks) and unsaturated hydraulic conductivities (Kw) for the pressure head of -2 cm of topsoil were also measured after the harvest using Guelph permeameter and Minidisk tensiometer, respectively. In general soil water retention curves measured before and after vegetation period apparently differed, which indicated soil material consolidation and soil-porous system rearrangement. Soil water retention curves obtained on the soil samples and hydraulic conductivities measured in the field reflected the position at the elevation transect and the effect of erosion/accumulation processes on soil structure and consequently on the soil hydraulic properties. The highest Ks values in Brumovice were obtained at the steepest parts of the elevation transects, that have been the most eroded. The Ks values at the bottom parts decreased due to the sedimentation of eroded soil particles. The change of the Kw values along transects didn't show similar trends. However, the variability of values within both transects was low. Higher values were obtained in transect B, where the soil was more affected by erosion. The highest values of Ks as well as the value of Kw were also obtained in the steepest part of transect A in Vidim. This trend was not observed in transect B. The results corresponded with measured retention curves. Two different trends were shown in Sedlčany. While the highest values of Ks and Kw were found in the upper part of transect A, in the case of transect B the highest values were measured at the bottom of transect. Differences observed at both localities were caused by the different terrain attributes of both transects and extent of soil erosion. Acknowledgement: Authors acknowledge the financial support of the Ministry of Agriculture of the Czech Republic (QJ1230319).

Point counts from clustered populations: Lessons from an experiment with Hawaiian crows

USGS Publications Warehouse

Hayward, G.D.; Kepler, C.B.; Scott, J.M.

1991-01-01

We designed an experiment to identify factors contributing most to error in counts of Hawaiian Crow or Alala (Corvus hawaiiensis) groups that are detected aurally. Seven observers failed to detect calling Alala on 197 of 361 3-min point counts on four transects extending from cages with captive Alala. A detection curve describing the relation between frequency of flock detection and distance typified the distribution expected in transect or point counts. Failure to detect calling Alala was affected most by distance, observer, and Alala calling frequency. The number of individual Alala calling was not important in detection rate. Estimates of the number of Alala calling (flock size) were biased and imprecise: average difference between number of Alala calling and number heard was 3.24 (.+-. 0.277). Distance, observer, number of Alala calling, and Alala calling frequency all contributed to errors in estimates of group size (P < 0.0001). Multiple regression suggested that number of Alala calling contributed most to errors. These results suggest that well-designed point counts may be used to estimate the number of Alala flocks but cast doubt on attempts to estimate flock size when individuals are counted aurally.

The Dinner Menu: Spatial Distribution of Organic Carbon Composition Across the San Francisco Bay-Delta

NASA Astrophysics Data System (ADS)

Harfmann, J.; Hernes, P.; Bergamaschi, B. A.

2016-12-01

The San Francisco Bay-Delta is a dynamic tidal system with multiple sources of carbon, both autochthonous (e.g. phytoplankton, submersed or floating aquatic vegetation, or non-phytoplankton microalgae) and allochthonous (e.g. riverine detritus, agricultural drainage, and urban runoff). Spatial variability in organic carbon (OC) sources translates into varying degrees of food quantity and quality for the aquatic food web, and yet surprisingly little is known about the implications of carbon source variability on the health of zooplankton populations, which form the base of the lower food chain. Particulate organic carbon (POC) is a critical component of zooplankton diet, and with the assistance of the microbial loop, dissolved organic carbon (DOC) may supplement their food. As part of a larger study linking OC sources with zooplankton growth, we collected water samples along a transect from San Pablo Bay to the Sacramento-San Joaquin Delta. Samples were analyzed for bulk POC and DOC, lignin, chlorophyll a, δ13C, and δ15N. Feeding experiments with the calanoid copepod Eurytemora affinis will be conducted in order to assess the relative bioavailability of collected OC across the transect.

Guided transect sampling - a new design combining prior information and field surveying

Treesearch

Anna Ringvall; Goran Stahl; Tomas Lamas

2000-01-01

Guided transect sampling is a two-stage sampling design in which prior information is used to guide the field survey in the second stage. In the first stage, broad strips are randomly selected and divided into grid-cells. For each cell a covariate value is estimated from remote sensing data, for example. The covariate is the basis for subsampling of a transect through...

Accounting for Subgroup Structure in Line-Transect Abundance Estimates of False Killer Whales (Pseudorca crassidens) in Hawaiian Waters

PubMed Central

Bradford, Amanda L.; Forney, Karin A.; Oleson, Erin M.; Barlow, Jay

2014-01-01

For biological populations that form aggregations (or clusters) of individuals, cluster size is an important parameter in line-transect abundance estimation and should be accurately measured. Cluster size in cetaceans has traditionally been represented as the total number of individuals in a group, but group size may be underestimated if group members are spatially diffuse. Groups of false killer whales (Pseudorca crassidens) can comprise numerous subgroups that are dispersed over tens of kilometers, leading to a spatial mismatch between a detected group and the theoretical framework of line-transect analysis. Three stocks of false killer whales are found within the U.S. Exclusive Economic Zone of the Hawaiian Islands (Hawaiian EEZ): an insular main Hawaiian Islands stock, a pelagic stock, and a Northwestern Hawaiian Islands (NWHI) stock. A ship-based line-transect survey of the Hawaiian EEZ was conducted in the summer and fall of 2010, resulting in six systematic-effort visual sightings of pelagic (n = 5) and NWHI (n = 1) false killer whale groups. The maximum number and spatial extent of subgroups per sighting was 18 subgroups and 35 km, respectively. These sightings were combined with data from similar previous surveys and analyzed within the conventional line-transect estimation framework. The detection function, mean cluster size, and encounter rate were estimated separately to appropriately incorporate data collected using different methods. Unlike previous line-transect analyses of cetaceans, subgroups were treated as the analytical cluster instead of groups because subgroups better conform to the specifications of line-transect theory. Bootstrap values (n = 5,000) of the line-transect parameters were randomly combined to estimate the variance of stock-specific abundance estimates. Hawai’i pelagic and NWHI false killer whales were estimated to number 1,552 (CV = 0.66; 95% CI = 479–5,030) and 552 (CV = 1.09; 95% CI = 97–3,123) individuals, respectively. Subgroup structure is an important factor to consider in line-transect analyses of false killer whales and other species with complex grouping patterns. PMID:24587372

Accounting for subgroup structure in line-transect abundance estimates of false killer whales (Pseudorca crassidens) in Hawaiian waters.

PubMed

Bradford, Amanda L; Forney, Karin A; Oleson, Erin M; Barlow, Jay

2014-01-01

For biological populations that form aggregations (or clusters) of individuals, cluster size is an important parameter in line-transect abundance estimation and should be accurately measured. Cluster size in cetaceans has traditionally been represented as the total number of individuals in a group, but group size may be underestimated if group members are spatially diffuse. Groups of false killer whales (Pseudorca crassidens) can comprise numerous subgroups that are dispersed over tens of kilometers, leading to a spatial mismatch between a detected group and the theoretical framework of line-transect analysis. Three stocks of false killer whales are found within the U.S. Exclusive Economic Zone of the Hawaiian Islands (Hawaiian EEZ): an insular main Hawaiian Islands stock, a pelagic stock, and a Northwestern Hawaiian Islands (NWHI) stock. A ship-based line-transect survey of the Hawaiian EEZ was conducted in the summer and fall of 2010, resulting in six systematic-effort visual sightings of pelagic (n = 5) and NWHI (n = 1) false killer whale groups. The maximum number and spatial extent of subgroups per sighting was 18 subgroups and 35 km, respectively. These sightings were combined with data from similar previous surveys and analyzed within the conventional line-transect estimation framework. The detection function, mean cluster size, and encounter rate were estimated separately to appropriately incorporate data collected using different methods. Unlike previous line-transect analyses of cetaceans, subgroups were treated as the analytical cluster instead of groups because subgroups better conform to the specifications of line-transect theory. Bootstrap values (n = 5,000) of the line-transect parameters were randomly combined to estimate the variance of stock-specific abundance estimates. Hawai'i pelagic and NWHI false killer whales were estimated to number 1,552 (CV = 0.66; 95% CI = 479-5,030) and 552 (CV = 1.09; 95% CI = 97-3,123) individuals, respectively. Subgroup structure is an important factor to consider in line-transect analyses of false killer whales and other species with complex grouping patterns.

Limited depth zonation among bathyal epibenthic megafauna of the Gully submarine canyon, northwest Atlantic

NASA Astrophysics Data System (ADS)

Kenchington, E. L.; Cogswell, A. T.; MacIsaac, K. G.; Beazley, L.; Law, B. A.; Kenchington, T. J.

2014-06-01

The Gully is a large submarine canyon incised into the Scotian Shelf, in the northwest Atlantic. A submersible-mounted camera was used to collect 17 km of high resolution video imagery of the soft sediment flanks and floor of the canyon between 1000 and 2500 m depth. A depth-stratified random survey design with two transects per stratum was followed. Depth strata were drawn at 1000-1500 m, 1500-2000 m and 2000-2500 m reflecting global and regional faunal boundaries. The 47,614 individuals or colonies observed on the transects were identified into 49 unique taxa drawn from 7 phyla, while 21 additional taxa were observed between the transect lines. Cnidaria was the most diverse phylum (22 taxa) on the transects, followed by the Echinodermata (15 taxa). Most fauna were sessile or sedentary suspension feeders. A species of Xenophyophorida, likely Syringammina sp., was the most abundant taxon. Cluster analysis of transects based on a Bray-Curtis (BC) matrix of species abundance identified one cluster of five transects and one independent transect - the deepest transect (2406 m average depth). A similarity profile test indicated that this structure is not random. There was a significant change in the megafaunal assemblage with depth over scales of 10s of kilometers, accounting for 65% of the variation in the BC matrix. Both total organic carbon and labile carbon were higher in cores from the 1000-1500 m stratum than at greater depth, consistent with transport of food and sediments into the canyon from shallower waters. The first principal component calculated from species abundances separated the two transects from the 1000-1500 m depth stratum from the others indicating that sediment food supply influences community structure and composition. Over small spatial scales (≤10 m), eight groups of species associations were identified. However, the associations between the species within each group were not strong with the highest correlation between the Xenophyophorida and the Pennatulacea (ρ=0.66). At this spatial scale substrate type was an important factor, with hard and soft bottom species associations being identified.

Probable errors in width distributions of sea ice leads measured along a transect

NASA Technical Reports Server (NTRS)

Key, J.; Peckham, S.

1991-01-01

The degree of error expected in the measurement of widths of sea ice leads along a single transect are examined in a probabilistic sense under assumed orientation and width distributions, where both isotropic and anisotropic lead orientations are examined. Methods are developed for estimating the distribution of 'actual' widths (measured perpendicular to the local lead orientation) knowing the 'apparent' width distribution (measured along the transect), and vice versa. The distribution of errors, defined as the difference between the actual and apparent lead width, can be estimated from the two width distributions, and all moments of this distribution can be determined. The problem is illustrated with Landsat imagery and the procedure is applied to a submarine sonar transect. Results are determined for a range of geometries, and indicate the importance of orientation information if data sampled along a transect are to be used for the description of lead geometries. While the application here is to sea ice leads, the methodology can be applied to measurements of any linear feature.

Inland and Near Shore Water Profiles Derived from the High Altitude Multiple Altimeter Beam Experimental Lidar (MABEL)

NASA Technical Reports Server (NTRS)

Jasinski, Michael F.; Stoll, Jeremy D.; Cook, William B.; Ondrusek, Michael; Stengel, Eric; Brunt, Kelly

2016-01-01

The Advanced Topographic Laser Altimeter System (ATLAS) on the Ice, Cloud, and Land Elevation Satellite (ICESat-2) mission is a six beam, low energy, high repetition rate, 532 nm laser transmitter with photon counting detectors. Although designed primarily for detecting height changes in icecaps, sea ice and vegetation, the polar-orbital satellite will observe global surface water during its designed three year life span, including inland water bodies, coasts, and open oceans. In preparation for the mission, an ICESat-2 prototype or the Multiple Altimeter Beam Experimental Lidar (MABEL), was built and flown on high altitude aircraft experiments over a range of inland and near-shore targets. The purpose was to test the ATLAS concept and to provide a database for developing an algorithm that detects along track surface water height and light penetration under a range of atmospheric and water conditions. The current analysis examines the datasets of three MABEL transects observed from 20 km above ground of coastal and inland waters conducted in 2012 and 2013. Transects ranged from about 2 to 12 km in length and included the middle Chesapeake Bay, the near shore Atlantic coast at Virginia Beach, and Lake Mead. Results indicate MABEL's high capability for retrieving surface water height statistics with a mean height precision of approximately 5-7 cm per 100m segment length. Profiles of attenuated subsurface backscatter, characterized using a Signal to Background Ratio written in Log10 base, or LSBR0, were observed over a range of 1.3 to 9.3 meters depending on water clarity and atmospheric background. Results indicate that observable penetration depth, although primarily dependent on water properties, was greatest when solar background rate was low. Near shore bottom reflectance was detected only at the Lake Mead site down to maximum of 10 m under a clear night sky and low turbidity of approximately 1.6 Nephelometric Turbidity Units (NTU). The overall results suggest that the feasibility of retrieving operational surface water height statistics from space-based photon counting systems such as ATLAS is very high for resolutions down to about 100m, even in partly cloudy conditions. The capability to observe subsurface backscatter profiles is achievable but requires much longer transects of several hundreds of meters.

Inland and Near-Shore Water Profiles Derived from the High-Altitude Multiple Altimeter Beam Experimental Lidar (MABEL)

NASA Technical Reports Server (NTRS)

Jasinski, Michael F.; Stoll, Jeremy D.; Cook, William B.; Ondrusek, Michael; Stengel, Eric; Brunt, Kelly

2016-01-01

The Advanced Topographic Laser Altimeter System (ATLAS) on the Ice, Cloud, and Land Elevation Satellite (ICESat-2) mission is a six beam, low energy, high repetition rate, 532-nanometer laser transmitter with photon counting detectors. Although designed primarily for detecting height changes in ice caps, sea ice, and vegetation, the polar-orbiting satellite will observe global surface water during its designed three-year life span, including inland waterbodies, coasts, and open oceans. In preparation for the mission, an ICESat-2 prototype, the Multiple Altimeter Beam Experimental Lidar (MABEL), was built and flown on high-altitude aircraft experiments over a range of inland and near-shore targets. The purpose was to test the ATLAS concept and to provide a database for developing an algorithm that detects along track surface water height and light penetration under a range of atmospheric and water conditions. The current analysis examines the data sets of three MABEL transects observed from 20 kilometers above ground of coastal and inland waters conducted in 2012 and 2013. Transects ranged from about 2 to 12 kilometers in length and included the middle Chesapeake Bay, the near-shore Atlantic coast at Virginia Beach, and Lake Mead. Results indicate MABEL's high capability for retrieving surface water height statistics with a mean height precision ofapproximately 5-7 centimeters per 100-meter segment length. Profiles of attenuated subsurface backscatter, characterized using a Signal to Background Ratio written in Log10 base, or LSBR (sub 0), were observed over a range of 1.3 to 9.3 meters, depending on water clarity and atmospheric background. Results indicate that observable penetration depth, although primarily dependent on water properties, was greatest when the solar background rate was low. Near-shore bottom reflectance was detected only at the Lake Mead site down to a maximum of 10 meters under a clear night sky and low turbidity of approximately 1.6 Nephelometric Turbidity Units (NTU). The overall results suggest that the feasibility of retrieving operational surface water height statistics from space-based photon counting systems such as ATLAS is very high for resolutions down to about 100 meters, even in partly cloudy conditions. The capability to observe subsurface backscatterprofiles is achievable but requires much longer transects of several hundreds of meters.

Soil moisture monitoring in Candelaro basin, Southern Italy

NASA Astrophysics Data System (ADS)

Campana, C.; Gigante, V.; Iacobellis, V.

2012-04-01

The signature of the hydrologic regime can be investigated, in principle, by recognizing the main mechanisms of runoff generation that take place in the basin and affect the seasonal behavior or the rainfall-driven events. In this framework, besides the implementation of hydrological models, a crucial role should be played by direct observation of key state variables such as soil moisture at different depths and different distances from the river network. In fact, understanding hydrological systems is often limited by the frequency and spatial distribution of observations. Experimental catchments, which are field laboratories with long-term measurements of hydrological variables, are not only sources of data but also sources of knowledge. Wireless distributed sensing platforms are a key technology to address the need for overcoming field limitations such as conflicts between soil use and cable connections. A stand-alone wireless network system has been installed for continuous monitoring of soil water contents at multiple depths along a transect located in Celone basin (sub-basin of Candelaro basin in Puglia, Southern Italy). The transect consists of five verticals, each one having three soil water content sensors at multiple depths: 0,05 m, 0,6 m and 1,2 m below the ground level. The total length of the transect is 307 m and the average distance between the verticals is 77 m. The main elements of the instrumental system installed are: fifteen Decagon 10HS Soil Moisture Sensors, five Decagon Em50R Wireless Radio Data Loggers, one Rain gauge, one Decagon Data Station and one Campbell CR1000 Data Logger. Main advantages of the system as described and presented in this work are that installation of the wireless network system is fast and easy to use, data retrieval and monitoring information over large spatial scales can be obtained in (near) real-time mode and finally other type of sensors can be connected to the system, also offering wide potentials for future applications. First records of the wireless underground network system indicate the presence of interesting patterns in space-time variability of volumetric soil moisture content, that provide evidence of the combined process of vertical infiltration and lateral flow. ACKNOWLEDGEMENT The research in this work is supported by the MIRAGE FP7 project (Grant agreement n. 211732).

Assessment of the line transect method: an examination of the spatial patterns of down and standing dead wood

Treesearch

Duncan C. Lutes

2002-01-01

The line transect method, its underlying assumptions, and the spatial patterning of down and standing pieces of dead wood were examined at the Tenderfoot Creek Experimental Forest in central Montana. The accuracy of the line transect method was not determined due to conflicting results of t-tests and ordinary least squares regression. In most instances down pieces were...

Circumferential suture technique for esophageal transection to treat esophageal variceal bleeding.

PubMed

Jeng, L B; Chen, M F

1993-01-01

The EEA stapler has been used routinely for esophageal transection to treat esophageal variceal bleeding for some time. It carries the risk of postoperative leakage and is not suitable in those cases receiving recent sclerotherapy. The circumferential suture technique presented in this paper can be used in any situation requiring esophageal transection. It has been utilized by us in twenty-two emergent cases with good results.

Analysis of down wood volme and percent ground cover for the Missouri Ozark forest ecosystem project

Treesearch

Laura A. Herbeck

2000-01-01

Volume and percent ground cover of down wood were estimated on the MOFEP sites from two separate sampling inventories, line transects and fixed-area plots. Line transects were used to sample down wood in the 1990-91 and 1994-95 inventories and fixed-area plots were used in an additional inventory in 1995. Line transect inventories estimated a range in ground cover...

A Brain-Machine-Muscle Interface for Restoring Hindlimb Locomotion after Complete Spinal Transection in Rats

PubMed Central

Alam, Monzurul; Chen, Xi; Zhang, Zicong; Li, Yan; He, Jufang

2014-01-01

A brain-machine interface (BMI) is a neuroprosthetic device that can restore motor function of individuals with paralysis. Although the feasibility of BMI control of upper-limb neuroprostheses has been demonstrated, a BMI for the restoration of lower-limb motor functions has not yet been developed. The objective of this study was to determine if gait-related information can be captured from neural activity recorded from the primary motor cortex of rats, and if this neural information can be used to stimulate paralysed hindlimb muscles after complete spinal cord transection. Neural activity was recorded from the hindlimb area of the primary motor cortex of six female Sprague Dawley rats during treadmill locomotion before and after mid-thoracic transection. Before spinal transection there was a strong association between neural activity and the step cycle. This association decreased after spinal transection. However, the locomotive state (standing vs. walking) could still be successfully decoded from neural recordings made after spinal transection. A novel BMI device was developed that processed this neural information in real-time and used it to control electrical stimulation of paralysed hindlimb muscles. This system was able to elicit hindlimb muscle contractions that mimicked forelimb stepping. We propose this lower-limb BMI as a future neuroprosthesis for human paraplegics. PMID:25084446

Laparoscopic repair of hernia in children: Comparison between ligation and nonligation of sac.

PubMed

Pant, Nitin; Aggarwal, Satish Kumar; Ratan, Simmi K

2014-04-01

The essence of the current techniques of laparoscopic hernia repair in children is suture ligation of the neck of the hernia sac at the deep ring with or without its transection. Some studies show that during open hernia repair, after transection at the neck it can be left unsutured without any consequence. This study was aimed to see if the same holds true for laparoscopic hernia repair. Sixty patients (52 boys and eight girls, 12-144 months) with indirect inguinal hernia were randomized for laparoscopic repair either by transection of the sac alone (Group I) or transection plus suture ligation of sac at the neck (Group II). Outcome was assessed in terms of time taken for surgery, recurrence, and other complications. Thirty-eight hernia units in 28 patients were repaired by transection alone (Group I) and 34 hernia units in 29 patients were repaired by transection and suture ligation (Group II). Three patients were found to have no hernia on laparoscopy. Recurrence rate and other complications were not significantly different in the two groups. All recurrences occurred in hernias with ring size more than 10 mm. Laparoscopic repair of hernia by circumferential incision of the peritoneum at the deep ring is as effective as incision plus ligation of the sac.

A brain-machine-muscle interface for restoring hindlimb locomotion after complete spinal transection in rats.

PubMed

Alam, Monzurul; Chen, Xi; Zhang, Zicong; Li, Yan; He, Jufang

2014-01-01

A brain-machine interface (BMI) is a neuroprosthetic device that can restore motor function of individuals with paralysis. Although the feasibility of BMI control of upper-limb neuroprostheses has been demonstrated, a BMI for the restoration of lower-limb motor functions has not yet been developed. The objective of this study was to determine if gait-related information can be captured from neural activity recorded from the primary motor cortex of rats, and if this neural information can be used to stimulate paralysed hindlimb muscles after complete spinal cord transection. Neural activity was recorded from the hindlimb area of the primary motor cortex of six female Sprague Dawley rats during treadmill locomotion before and after mid-thoracic transection. Before spinal transection there was a strong association between neural activity and the step cycle. This association decreased after spinal transection. However, the locomotive state (standing vs. walking) could still be successfully decoded from neural recordings made after spinal transection. A novel BMI device was developed that processed this neural information in real-time and used it to control electrical stimulation of paralysed hindlimb muscles. This system was able to elicit hindlimb muscle contractions that mimicked forelimb stepping. We propose this lower-limb BMI as a future neuroprosthesis for human paraplegics.

Calpains mediate axonal cytoskeleton disintegration during Wallerian degeneration

PubMed Central

Ma, Marek; Ferguson, Toby A.; Schoch, Kathleen M.; Li, Jian; Qian, Yaping; Shofer, Frances S.; Saatman, Kathryn E.; Neumar, Robert W.

2013-01-01

In both the central nervous system (CNS) and peripheral nervous system (PNS), transected axons undergo Wallerian degeneration. Even though Augustus Waller first described this process after transection of axons in 1850, the molecular mechanisms may be shared, at least in part, by many human diseases. Early pathology includes failure of synaptic transmission, target denervation, and granular disintegration of the axonal cytoskeleton (GDC). The Ca2+-dependent proteases calpains have been implicated in GDC but causality has not been established. To test the hypothesis that calpains play a causal role in axonal and synaptic degeneration in vivo, we studied transgenic mice that express human calpastatin (hCAST), the endogenous calpain inhibitor, in optic and sciatic nerve axons. Five days after optic nerve transection and 48 hours after sciatic nerve transection, robust neurofilament proteolysis observed in wild-type controls was reduced in hCAST transgenic mice. Protection of the axonal cytoskeleton in sciatic nerves of hCAST mice was nearly complete 48 hours post-transection. In addition, hCAST expression preserved the morphological integrity of neuromuscular junctions. However, compound muscle action potential amplitudes after nerve transection were similar in wild-type and hCAST mice. These results, in total, provide direct evidence that calpains are responsible for the morphological degeneration of the axon and synapse during Wallerian degeneration. PMID:23542511

Heat tracing to determine spatial patterns of hyporheic exchange across a river transect

NASA Astrophysics Data System (ADS)

Lu, Chengpeng; Chen, Shuai; Zhang, Ying; Su, Xiaoru; Chen, Guohao

2017-09-01

Significant spatial variability of water fluxes may exist at the water-sediment interface in river channels and has great influence on a variety of water issues. Understanding the complicated flow systems controlling the flux exchanges along an entire river is often limited due to averaging of parameters or the small number of discrete point measurements usually used. This study investigated the spatial pattern of the hyporheic flux exchange across a river transect in China, using the heat tracing approach. This was done with measurements of temperature at high spatial resolution during a 64-h monitoring period and using the data to identify the spatial pattern of the hyporheic exchange flux with the aid of a one-dimensional conduction-advection-dispersion model (VFLUX). The threshold of neutral exchange was considered as 126 L m-2 d-1 in this study and the heat tracing results showed that the change patterns of vertical hyporheic flux varied with buried depth along the river transect; however, the hyporheic flux was not simply controlled by the streambed hydraulic conductivity and water depth in the river transect. Also, lateral flow dominated the hyporheic process within the shallow high-permeability streambed, while the vertical flow was dominant in the deep low-permeability streambed. The spatial pattern of hyporheic exchange across the river transect was naturally controlled by the heterogeneity of the streambed and the bedform of the stream cross-section. Consequently, a two-dimensional conceptual illustration of the hyporheic process across the river transect is proposed, which could be applicable to river transects of similar conditions.

Chondroprotective effects of zoledronic acid on articular cartilage in dogs with experimentally induced osteoarthritis.

PubMed

Dearmin, Michael G; Trumble, Troy N; García, Anapatricia; Chambers, Jon N; Budsberg, Steven C

2014-04-01

To assess effects of zoledronic acid on biomarkers, radiographic scores, and gross articular cartilage changes in dogs with induced osteoarthritis. 21 purpose-bred hound-type dogs. The left stifle joint of each dog was examined arthroscopically to determine initial articular cartilage status, which was followed by cranial cruciate ligament (CrCL) transection to induce osteoarthritis. Dogs were assigned to 3 groups (control group, low dose [10 μg of zoledronic acid/kg], or high dose [25 μg of zoledronic acid/kg). Treatments were administered SC every 3 months for 1 year beginning the day after CrCL transection. Serum and synovial fluid samples and radiographs were obtained 0, 1, 3, 6, 9, and 12 months after transection. At 12 months, each joint was scored for cartilage defects. Serum and synovial fluid biomarkers of bone and cartilage turnover (bone-specific alkaline phosphatase, type I and II collagen, carboxy-propeptide of type II collagen, and chondroitin sulfate 846) were analyzed with ELISAs. The high-dose group had fewer total articular defects and lower severity scores in CrCL-transected stifle joints than did the control group. In addition, the high-dose group had significantly less change in collagenase cleavage of type I or II collagen in the synovial fluid at 1 and 3 months after CrCL transection than did the control group and also had greater changes in bone-specific alkaline phosphatase in synovial fluid at 3 months after CrCL transection than did the control group. Zoledronic acid had a chondroprotective effect in dogs with a transected CrCL.

Multiple hydrothermal and metamorphic events in the Kidd Creek volcanogenic massive sulphide deposit, Timmins, Ontario: evidence from tourmalines and chlorites

USGS Publications Warehouse

Slack, J.F.; Coad, P.R.

1989-01-01

The tourmalines and chlorites record a series of multiple hydrothermal and metamorphic events. Paragenetic studies suggest that tourmaline was deposited during several discrete stages of mineralization, as evidence by brecciation and cross-cutting relationships. Most of the tourmalines have two concentric growth zones defined by different colours (green, brown, blue, yellow). Some tourmalines also display pale discordant rims that cross-cut and embay the inner growth zones and polycrystalline, multiple-extinction domains. Late sulphide veinlets (chalcopyrite, pyrrhotite) transect the inner growth zones and pale discordant rims of many crystals. The concentric growth zones are interpreted as primary features developed by the main ore-forming hydrothermal system, whereas the discordant rims, polycrystalline domains, and cross-cutting sulphide veinlets reflect post-ore metamorphic processes. Variations in mineral proportions and mineral chemistry within the deposit mainly depend on fluctuations in temperature, pH, water/rock ratios, and amounts of entrained seawater. -from Authors

Evaluating environmental drivers of spatial variability in free-living nematode assemblages along the Portuguese margin

NASA Astrophysics Data System (ADS)

Lins, Lidia; Leliaert, Frederik; Riehl, Torben; Pinto Ramalho, Sofia; Alfaro Cordova, Eliana; Morgado Esteves, André; Vanreusel, Ann

2017-02-01

Understanding processes responsible for shaping biodiversity patterns on continental margins is an important requirement for comprehending anthropogenic impacts in these environments and further management of biodiversity. Continental margins perform crucial functions linked to key ecological processes which are mainly structured by surface primary productivity and particulate organic matter flux to the seafloor, but also by heterogeneity in seafloor characteristics. However, to what extent these processes control local and regional biodiversity remains unclear. In this study, two isobathic parallel transects located at the shelf break (300-400 m) and upper slope (1000 m) of the western Iberian margin were used to test how food input and sediment heterogeneity affect nematode diversity independently from the spatial factors geographical distance and water depth. We also examined the potential role of connectedness between both depth transects through molecular phylogenetic analyses. Regional generic diversity and turnover were investigated at three levels: within a station, between stations from the same depth transect, and between transects. High variability in food availability and high sediment heterogeneity at the shelf-break transect were directly linked to high diversity within stations and higher variation in community structure across stations compared to the upper slope transect. Contrastingly, environmental factors (food availability and sediment) did not vary significantly between stations located at the upper slope, and this lack of differences were also reflected in a low community turnover between these deeper stations. Finally, differences in nematode communities between both transects were more pronounced than differences within each of the isobathic transects, but these changes were paralleled by the previously mentioned environmental changes. These results suggest that changes in community structure are mainly dictated by environmental factors rather than spatial differences at the western Iberian margin. Furthermore, phylogenetic relationships revealed no evidence for depth-endemic lineages, indicating regular species interchanges across different depths.

A parametric generalization of the Hayne estimator for line transect sampling

USGS Publications Warehouse

Burnham, Kenneth P.

1979-01-01

The Hayne model for line transect sampling is generalized by using an elliptical (rather than circular) flushing model for animal detection. By assuming the ration of major and minor axes lengths is constant for all animals, a model results which allows estimation of population density based directly upon sighting distances and sighting angles. The derived estimator of animal density is a generalization of the Hayne estimator for line transect sampling.

Water-level, borehole geophysical log, and water-quality data from wells transecting the freshwater/saline-water interface of the San Antonio segment of the Edwards Aquifer, South-Central Texas, 1999-2007

USGS Publications Warehouse

Lambert, Rebecca B.; Hunt, Andrew G.; Stanton, Gregory P.; Nyman, Michael B.

2009-01-01

As a part of a 9-year (1999-2007) study done by the U.S. Geological Survey in cooperation with the San Antonio Water System to improve understanding of the San Antonio segment of the Edwards aquifer, south-central Texas, in and near the freshwater/saline-water transition zone of the aquifer, the U.S. Geological Survey collected water-level, borehole geophysical, and water-quality data during 1999-2007 from 37 wells arranged in nine transects (except for two wells) across the freshwater/saline-water interface of the aquifer. This report presents the data collected and also describes the data-collection, analytical, and quality-assurance methods used. The wells, constructed with casing from land surface into the upper part of the aquifer and completed as open hole in the aquifer, are in Uvalde County (East Uvalde transect), in Medina County (South Medina and Devine wells), in Bexar County (Pitluk, Mission, and San Antonio transects), in Comal and Guadalupe Counties (Tri-County transect), in Comal County (New Braunfels transect), and in Hays County (Fish Hatchery, San Marcos, and Kyle transects). Data collected included continuous water level at 18 wells; fluid electrical conductivity and temperature with depth (fluid profiles) obtained by borehole geophysical logging of 15 wells; discrete (periodic) samples for major ions and trace elements at 36 wells; stable isotopes or stable isotopes and tritium at 27 wells; dissolved gases obtained by pumping (or collecting flow) of 19 wells; and continuous specific conductance and temperature at three of the wells equipped with continuous water-level sensors.

Mesoscale variability observed in the Northern Adriatic in autumn 2016

NASA Astrophysics Data System (ADS)

Pasaric, Zoran; Iva, Medjugorac; Nastjenka, Supic; Tamara, Djakovac; Mirko, Orlic

2017-04-01

Quasi-synoptic measurements of hydrographic properties were performed in the Northern Adriatic along the transect extending from Rovinj to the Po River mouth in an approximately east-west direction. The depth along the transect slowly varies between 30 and 40 m. Three one-day cruises were conducted, the first on 12 Nov, the second on 18 Nov, and the third on 25 Nov 2016. During the first and the third cruise the sampling was done with a CTD probe lowered from the surface to the bottom, at eleven stations placed nearly equidistantly along the transect. Average distance between the stations was 6 km. The second cruise was conducted with a towed yo-yo profiler equipped with the CTD probe and continuously undulating between the surface and some 4 m above the bottom. With roughly three undulations per kilometer, horizontal resolution along the transect was about 200 m. The data suggest that three processes occurred during the cruises: 1) surface cooling and related vertical mixing, 2) intrusion of high-salinity waters into the western part of the transect, and 3) propagation of a mesoscale formation in a westward direction. The existence and propagation of the mesoscale feature is supported by a simple analytical model of topographic Rossby waves. By assuming that the bottom varies linearly in the direction perpendicular to the transect, the propagation speed of O(1 km/day) is obtained - in agreement with the observations.

Environmental variation, vegetation distribution, carbon dynamics and water/energy exchange at high latitudes

USGS Publications Warehouse

McGuire, A.D.; Wirth, C.; Apps, M.; Beringer, J.; Clein, J.; Epstein, H.; Kicklighter, D.W.; Bhatti, J.; Chapin, F. S.; De Groot, B.; Efremov, D.; Eugster, W.; Fukuda, M.; Gower, T.; Hinzman, L.; Huntley, B.; Jia, G.J.; Kasischke, E.; Melillo, J.; Romanovsky, V.; Shvidenko, A.; Vaganov, E.; Walker, D.

2002-01-01

The responses of high latitude ecosystems to global change involve complex interactions among environmental variables, vegetation distribution, carbon dynamics, and water and energy exchange. These responses may have important consequences for the earth system. In this study, we evaluated how vegetation distribution, carbon stocks and turnover, and water and energy exchange are related to environmental variation spanned by the network of the IGBP high latitude transects. While the most notable feature of the high latitude transects is that they generally span temperature gradients from southern to northern latitudes, there are substantial differences in temperature among the transects. Also, along each transect temperature co-varies with precipitation and photosynthetically active radiation, which are also variable among the transects. Both climate and disturbance interact to influence latitudinal patterns of vegetation and soil carbon storage among the transects, and vegetation distribution appears to interact with climate to determine exchanges of heat and moisture in high latitudes. Despite limitations imposed by the data we assembled, the analyses in this study have taken an important step toward clarifying the complexity of interactions among environmental variables, vegetation distribution, carbon stocks and turnover, and water and energy exchange in high latitude regions. This study reveals the need to conduct coordinated global change studies in high latitudes to further elucidate how interactions among climate, disturbance, and vegetation distribution influence carbon dynamics and water and energy exchange in high latitudes.

Expression of the repulsive guidance molecule RGM and it receptor Neogenin after spinal cord injury in sea lamprey

PubMed Central

Shifman, Michael I.; Yumul, Rae Eden; Laramore, Cindy; Selzer, Michael E.

2009-01-01

The sea lamprey recovers normal-appearing locomotion after spinal cord transection and its spinal axons regenerate selectively in their correct paths. However, among identified reticulospinal neurons some are consistently bad regenerators and only about 50% of severed reticulospinal axons regenerate through the site of injury. We previously suggested (Shifman and Selzer, 2000) that selective chemorepulsion might explain why some neurons are bad regenerators and others not. To explore the role of additional chemorepulsive axonal guidance molecules during regeneration, we examined the expression of the repulsive guidance molecule (RGM) and its receptor neogenin by in situ hybridization and quantitative PCR. RGM mRNA was expressed in the spinal cord, primarily in neurons of the lateral gray matter and in dorsal cells. Following spinal cord transection, RGM message was downregulated in neurons close (within 10 mm) to the transection at 2 and 4 weeks, although it was upregulated in reactive microglia at 2 weeks post-transection. Neogenin mRNA expression was unchanged in the brainstem after spinal cord transection, and among the identified reticulospinal neurons, was detected only in “bad regenerators, Neurons that are known to regenerate well never expressed neogenin. The downregulation of RGM expression in neurons near the transection may increase the probability that regenerating axons will regenerate through the site of injury and entered caudal spinal cord. PMID:19268666

A field experiment and numerical modeling of a tracer at a gravel beach in Prince William Sound, Alaska

NASA Astrophysics Data System (ADS)

Guo, Qiaona; Li, Hailong; Boufadel, Michel C.; Liu, Jin

2014-12-01

Oil from the 1989 Exxon Valdez oil spill persists in many gravel beaches in Prince William Sound (Alaska, USA), despite great remedial efforts. A tracer study using lithium at a gravel beach on Knight Island, Prince William Sound, during the summer of 2008 is reported. The tracer injection and transport along a transect were simulated using the two-dimensional numerical model MARUN. Model results successfully reproduced the tracer concentrations observed at wells along the transect. A sensitivity analysis revealed that the estimated parameters are well determined. The simulated spatial distribution of tracer indicated that nutrients applied along the transect for bioremediation purposes would be washed to the sea very quickly (within a semi-diurnal tidal cycle) by virtue of the combination of the two-layered beach structure, the tidal fluctuation and the freshwater flow from inland. Thus, pore-water samples in the transect were found to be clean due to factors other than bioremediation. This may explain why the oil did not persist within the transect.

Detection of sea otters in boat-based surveys of Prince William Sound, Alaska. Marine mammal study 6-19. Exxon Valdez oil spill state/federal natural resource damage assessment final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Udevitz, M.S.; Bodkin, J.L.; Costa, D.P.

1995-05-01

Boat-based surveys were used to monitor the Prince William Sound sea otter population before and after the Exxon Valdez oil spill. Population and loss estimates could be obtained from these surveys by direct expansion from the counts in the surveyed transects under the assumption that all otters in those transects were observed. The authors conducted a pilot study using ground-based observers in conjunction with the August 1990 survey of marine mammals and birds to investigate the validity of this assumption. The proportion of otters detected by boat crews was estimated by comparing boat and ground-based observations on 22 segments ofmore » shoreline transects. Overall, the authors estimated that only 70% of the otters in surveyed shoreline transects were detected by the boat crews. These results suggest that unadjusted expansions of boat survey transect counts will underestimate sea otter population size and that loss estimates based on comparisons of unadjusted population estimates will be biased.« less

The development of blue ice moraines from englacial debris bands as detected by GPR, Mt Achernar, central Transantarctic Mountains, Antarctica

NASA Astrophysics Data System (ADS)

Kassab, C.; Lindback, K.; Pettersson, R.; Licht, K.; Graly, J. A.; Kaplan, M. R.

2016-12-01

Blue ice moraines cover a small percentage of Antarctica, but can contain a significant record of ice sheet dynamics and climate over multiple glacial cycles. Previous work has focused on the temporal and provenance record contained within these moraines and less on mechanisms by which such deposits form and their temporal evolution. In order to create a conceptual model of their formation, >25 km of ground penetrating radar transects at 25 and 100 MHz frequencies were collected at the Mt Achernar moraine adjacent to Law Glacier. Here, ice ablation causes debris bands to emerge and deliver sediment to the surface. Most transects were collected perpendicular to the ice-moraine margin, and extend from the actively flowing Law Glacier ice to a distance of 2 km into the moraine. The 25 and 100 MHz transects penetrate to a depth of 200 m and 60 m respectively and reveal a relatively complex internal stratigraphy. Closest to the ice-moraine margin, stratigraphy is not well resolved due to a high amount of clutter. Steeply dipping parallel reflections first emerge 400m away from the ice margin and dip toward Law Glacier. These reflections continue inwards to 1450m, where the reflections become more closely spaced. Hummocky topography and parallel ridge/trough topography dominate the geomorphic expression. The hummocky topography corresponds to the region where reflections are not well resolved. The ridges are interpreted to be debris bands that are emerging at the surface, similar to those along the margin of the Law Glacier where debris is newly emerging. The reflections in the GPR transects indicate that debris is transported from depth to the surface of the ice where it accumulates forming the Mt Achernar moraine. It appears that the various reflection patterns correspond to unique surface geomorphic expressions. The reflections also indicate that at least the first 2 km of debris rich buried ice in the moraine can be linked to the actively flowing Law Glacier. Understanding the formation of this moraine will assist with further interpretation of temporal and provenance data also collected at this site and ultimately contribute to the understanding of ice sheet dynamics and climate records contained within blue ice moraines.

Habitat Use and Trophic Structure in a Highly Migratory Predatory Fish Identified with Geochemical Proxies in Scales

NASA Astrophysics Data System (ADS)

Seeley, M.; Walther, B. D.

2016-02-01

Atlantic tarpon, Megalops atlanticus, are highly migratory euryhaline predators that occupy different habitats throughout ontogeny. Specifically, Atlantic tarpon are known to inhabit oligohaline waters, although the frequency and duration of movements across estuarine gradients into these waters are relatively unknown. This species supports over a two billion dollar industry within the Gulf of Mexico and is currently listed as vulnerable under the International Union for the Conservation of Nature (IUCN). A new non-lethal method for reconstructing migrations across estuaries relies on trace element and stable isotope compositions of growth increments in scales. We analyzed Atlantic tarpon scales from the Texas coast to validate this method using inductively coupled plasma mass spectrometry (ICP-MS) for trace elements and isotope ratio mass spectrometry (IR-MS) for stable isotope ratios. Multiple scales were also taken from the same individual to confirm the consistency of elemental uptake within the same individual. Results show that scale Ba:Ca, Sr:Ca and δ13C are effective proxies for salinity, while enrichments in δ15N are consistent with known ontogenetic trophic shifts. In addition, chemical transects across multiple scales from the same individual were highly consistent, suggesting that any non-regenerated scale removed from a fish can provide equivalent time series. Continuous life history profiles of scales were obtained via laser ablation transects of scale cross-sections to quantify trace element concentrations from the core (youngest increments) to the edge (oldest increments). Stable isotope and trace element results together indicate that behavior is highly variable between individuals, with some but not all fish transiting estuarine gradients into oligohaline waters. Our findings will provide novel opportunities to investigate alternative non-lethal methods to monitor fish migrations across chemical gradients.

Assessment of circulation and inter-basin transport in the Salish Sea including Johnstone Strait and Discovery Islands pathways

DOE Office of Scientific and Technical Information (OSTI.GOV)

Khangaonkar, Tarang; Long, Wen; Xu, Wenwei

The Salish Sea consisting of Puget Sound and Georgia Basin in U.S and Canadian waters has been the subject of several independent data collection and modeling studies. However, these interconnected basins and their hydrodynamic interactions have not received attention as a contiguous unit. The Strait of Juan de Fuca is the primary pathway through which Pacific Ocean water enters the Salish Sea but the role played by Johnstone Strait and the complex channels northeast of Vancouver Island, connecting the Salish Sea and the Pacific Ocean, on overall Salish Sea circulation has not been characterized. In this paper we present amore » modeling-based assessment of the two-layer circulation and transport through the multiple interconnected sub-basins within the Salish Sea including the effect of exchange via Johnstone Strait and Discovery Islands. The Salish Sea Model previously developed using the finite volume community ocean model (FVCOM) was expanded over the continental shelf for this assessment encircling Vancouver Island, including Discovery Islands, Johnstone Strait, Broughton Archipelago and the associated waterways. A computational technique was developed to allow summation of volume fluxes across arbitrary transects through unstructured finite volume cells. Tidally averaged volume fluxes were computed at multiple transects. The results were used to validate the classic model of Circulation in Embracing Sills for Puget Sound and to provide quantitative estimates of the lateral distribution of tidally averaged transport through the system. Sensitivity tests with and without exchanges through Johnstone Strait demonstrate that it is a pathway for Georgia Basin runoff and Fraser River water to exit the Salish Sea and for Pacific Ocean inflow. However the relative impact of this exchange on circulation and flushing in Puget Sound Basin is small.« less

Exploring seascape genetics and kinship in the reef sponge Stylissa carteri in the Red Sea

PubMed Central

Giles, Emily C; Saenz-Agudelo, Pablo; Hussey, Nigel E; Ravasi, Timothy; Berumen, Michael L

2015-01-01

A main goal of population geneticists is to study patterns of gene flow to gain a better understanding of the population structure in a given organism. To date most efforts have been focused on studying gene flow at either broad scales to identify barriers to gene flow and isolation by distance or at fine spatial scales in order to gain inferences regarding reproduction and local dispersal. Few studies have measured connectivity at multiple spatial scales and have utilized novel tools to test the influence of both environment and geography on shaping gene flow in an organism. Here a seascape genetics approach was used to gain insight regarding geographic and ecological barriers to gene flow of a common reef sponge, Stylissa carteri in the Red Sea. Furthermore, a small-scale (<1 km) analysis was also conducted to infer reproductive potential in this organism. At the broad scale, we found that sponge connectivity is not structured by geography alone, but rather, genetic isolation in the southern Red Sea correlates strongly with environmental heterogeneity. At the scale of a 50-m transect, spatial autocorrelation analyses and estimates of full-siblings revealed that there is no deviation from random mating. However, at slightly larger scales (100–200 m) encompassing multiple transects at a given site, a greater proportion of full-siblings was found within sites versus among sites in a given location suggesting that mating and/or dispersal are constrained to some extent at this spatial scale. This study adds to the growing body of literature suggesting that environmental and ecological variables play a major role in the genetic structure of marine invertebrate populations. PMID:26257865

NGEE Arctic Plant Traits: Shrub Transects, Kougarok Road Mile Marker 64, Seward Peninsula, Alaska, 2016

DOE Data Explorer

Verity Salmon; Colleen Iversen; Peter Thornton; Ma

2017-03-01

Transect data is from point center quarter surveys for shrub density performed in July 2016 at the Kougarok hill slope located at Kougarok Road, Mile Marker 64. For each sample point along the transects, moving averages for shrub density and shrub basal area are provided along with GPS coordinates, average shrub height and active layer depth. The individual height, basal area, and species of surveyed shrubs are also included. Data upload will be completed January 2017.

Effects of excluding goat herbivory on Acacia tortilis woodland around pastoralist settlements in northwest Kenya

NASA Astrophysics Data System (ADS)

Oba, Gufu

1998-08-01

Browsing by goats is considered to cause poor tree regeneration and reduced tree growth around settlements throughout the arid zones of sub-Saharan Africa. This study investigated whether excluding goats from Acacia tortilis woodlands increased tree regeneration, current season's shoot growth rates and browse production over a period of 52 months between 1986 and 1990. The study also investigated the effects of climatic variability on tree growth and browse production. Excluding goat herbivory provided no advantage over continuous browsing for juvenile A. tortilis. Trees on the unbrowsed and on browsed transects increased by 22.2 (standard error [SE] ± 0.53) cm·yr -1 and 25.0 (SE ± 0.58) cm·yr -1, respectively. Fewer but longer shoots were produced by trees on the unbrowsed transects, while trees on the browsed transects invested more in shorter shoots. Net total browse production was lower on unbrowsed (1.73 [standard deviation (SD) ± 4.3] t·ha -1·yr -1) than on the browsed (3.03 [SD ± 3.6] t·ha -1 ·yr -1) transects. Biomass production on unbrowsed and browsed transects was closely correlated with rainfall and presumably soil moisture during wet seasons. Relative growth rates (RGR) of current season's shoots in the two treatments did not differ, implying goat herbivory at moderate stocking density (i.e. 13.0 tropical livestock units [TLU]·km -2) stimulated shoot growth. RGR remained positive except on the browsed transects during 1990, a dry year. Goat browsing pressure was moderate. Total biomass loss on unbrowsed transects was 15.5 %·yr -1 compared with 27.7 %·yr -1 on the browsed transects. These findings do not support the notion that goats always destroy young trees around settlements. Goat herbivory at moderate intensity stimulated shoot productivity. However, the results should not be used to generalize all conditions throughout sub-Saharan Africa, let alone the arid zones of northern Kenya. Rather, there is a need to emphasize individual case studies that ultimately can be used for managing degraded woodlands near pastoralist settlements.

Multiple geophysical surveys for old landfill monitoring in Singapore.

PubMed

Yin, Ke; Tong, Huanhuan; Giannis, Apostolos; Wang, Jing-Yuan; Chang, Victor W-C

2017-01-01

One-dimensional boring presents limitations on mapping the refuse profile in old landfills owning to waste heterogeneity. Electrical imaging (EI) and multiple-analysis of surface wave (MASW) were hereby deployed at an old dumping ground in Singapore to explore the subsurface in relation to geotechnical analysis. MASW estimated the refuse boundary with a higher precision as compared to EI, due to its endurance for moisture variation. EI and MASW transection profiles suggested spots of interest, e.g., refuse pockets and leachate mounds. 3D inversion of EI and MASW data further illustrated the transformation dynamics derived by natural attenuation, for instance the preferential infiltration pathway. Comparison of geophysical surveys at different years uncovered the subterranean landfill conditions, indicating strong impacts induced by aging, precipitation, and settlement. This study may shed light on a characterization framework of old landfills via combined geophysical models, thriving landfill knowledge with a higher creditability.

Evaluating the intensity of fire at the Acheulian site of Gesher Benot Ya'aqov-Spatial and thermoluminescence analyses.

PubMed

Alperson-Afil, Nira; Richter, Daniel; Goren-Inbar, Naama

2017-01-01

This manuscript presents an attempt to evaluate the intensity of fire through spatial patterning and thermoluminescence methodology. Previous studies of Layer II-6 Level 2 at the Acheulian site of Gesher Benot Ya'aqov suggested that hominins differentiated their activities across space, including multiple activities around a hearth reconstructed on the basis of the distribution of burned flint artifacts. A transect of ~4 m was extended from the center of the reconstructed hearth of Level 2 to its periphery in order to examine the intensity of fire. Burned and unburned flint microartifacts were sampled along this transect. The results of earlier and current thermoluminescence (TL) analysis demonstrate a general agreement with the macroscopic determination of burning, indicating that the possibility of misinterpretation based on macroscopic observations is negligible. The TL signal from flint microartifacts close to the hearth's center shows unambiguous signs of strong heating, whereas with increasing distance from the hearth the TL signal can be interpreted as a result of decreasing temperatures and/or shorter durations of exposure to fire in addition to a decreasing number of flints showing fire damage. Our study shows that TL analysis can identify some variation in fire intensity, which allows a more precise classification of burned flint microartifacts with respect to their heating history.

Compound Motor Action Potential Quantifies Recurrent Laryngeal Nerve Innervation in a Canine Model.

PubMed

Bhatt, Neel K; Park, Andrea M; Al-Lozi, Muhammad; Paniello, Randal C

2016-07-01

The compound motor action potential (CMAP) is the summated action potential from multiple muscle fibers activated by a single nerve impulse. The utility of laryngeal muscle CMAP for quantifying innervation following recurrent laryngeal nerve (RLN) injury was investigated. In a series of 21 canine hemi-laryngeal preparations, RLNs were exposed and a stimulating electrode placed. Maximum CMAP amplitudes and area under the curve from the thyroarytenoid (TA) muscles were obtained at baseline and at 6 months following injury to the RLN. Injury mechanisms included crush, stretch, cautery, and complete transection with microsuture repair. Prior to injury, baseline CMAP amplitudes and area under the curve were 15.81 mV and 15.49mVms, respectively. Six months following injury, CMAP amplitude and area under curve were 105.1% and 102.1% of baseline for stretch, 98.7% and 112.7% for crush, 93.3% and 114.3% for cautery. The CMAP amplitude and area under the curve in the transection/repair group had a 54.3% and 69.4% recovery, respectively, which were significantly different than baseline (P < .01, P < .05). These values were correlated with vocal fold motion. The CMAP is a measure of vocal fold innervation. The technique could be further developed for clinical and experimental applications. © The Author(s) 2016.

Measuring Historical Coastal Change using GIS and the Change Polygon Approach

USGS Publications Warehouse

Smith, M.J.; Cromley, R.G.

2012-01-01

This study compares two automated approaches, the transect-from-baseline technique and a new change polygon method, for quantifying historical coastal change over time. The study shows that the transect-from-baseline technique is complicated by choice of a proper baseline as well as generating transects that intersect with each other rather than with the nearest shoreline. The change polygon method captures the full spatial difference between the positions of the two shorelines and average coastal change is the defined as the ratio of the net area divided by the shoreline length. Although then change polygon method is sensitive to the definition and measurement of shoreline length, the results are more invariant to parameter changes than the transect-from-baseline method, suggesting that the change polygon technique may be a more robust coastal change method. ?? 2012 Blackwell Publishing Ltd.

Cross-continental comparison of the functional composition and carbon allocation of two altitudinal forest transects in Ecuador and Rwanda.

NASA Astrophysics Data System (ADS)

Bauters, Marijn; Bruneel, Stijn; Demol, Miro; Taveirne, Cys; Van Der Heyden, Dries; Boeckx, Pascal; Kearsley, Elizabeth; Cizungu, Landry; Verbeeck, Hans

2016-04-01

Tropical forests are key actors in the global carbon cycle. Predicting future responses of these forests to global change is challenging, but important for global climate models. However, our current understanding of such responses is limited, due to the complexity of forest ecosystems and the slow dynamics that inherently form these systems. Our understanding of ecosystem ecology and functioning could greatly benefit from experimental setups including strong environmental gradients in the tropics, as found on altitudinal transects. We setup two such transects in both South-America and Africa, focussing on shifts in carbon allocation, forest structure and functional composition. By a cross-continental comparison of both transects, we will gain insight in how different or alike both tropical forests biomes are in their responses, and how universal the observed adaption mechanisms are.

Transection of the deep metatarsal transverse ligament in Morton's neuroma surgery does not increase risk of splayfoot development.

PubMed

Kasparek, Maximilian; Schneider, Wolfgang

2016-05-01

Although operative excision is regarded as the treatment of choice in Morton's neuroma, it remains unclear whether transection of deep transverse metatarsal ligament (DTML) is a risk for metatarsal splaying and whether simultaneous surgery in adjacent intermetatarsal spaces is a risk for osteonecrosis of the adjacent metatarsals. Fifty-seven feet in 47 patients had excision of a Morton's neuroma, with a mean follow-up of 15.3 years. Feet were categorised depending upon whether the DTML was or was not divided. Pre-operative and post-operative intermetatarsal angles were measured on standardised weightbearing radiographs and inspected for evidence of osteonecrosis. Comparison of pre- and post-operative intermetatarsal angles in patients with surgery in the second web space showed no significant increase (transected p = 0.659, preserved p = 0.142). In regards to comparison of pre- and post-operative radiographic intermetatarsal angles in patients with surgery in the third web space, statistical analysis also did not show a significance increase (transected p = 0.240, preserved p = 0.078). Radiological assessment showed no signs of osteonecrosis of metatarsal heads, not even in cases of double-space surgery. In conclusion, DTML transection does not increase the intermetatarsal angle or the risk of splayfoot development. Moreover, transection is recommended due to an enhanced overview during surgery and better clinical outcome. Our data could also prove that double-space surgery is not a risk for avascular osteonecrosis.

Full spinal cord regeneration after total transection is not possible due to entropy change.

PubMed

Zielinski, P; Sokal, P

2016-09-01

Transected spinal cord regeneration is a main challenge of regenerative medicine. The mainstream of research is focused on the promotion of spinal axons growth, which is strongly inhibited in mammals. Assuming that the inhibition of the axonal growth may be ever overcome, the complexity of neural reconnections may be the second serious stand to overcome. Peripheral nerve axons regeneration seem to form a random pattern of their targets reconnections. The hypothesis is that due to the laws of entropy or irreversible information loss the full spinal cord restoration after the transection is not possible. The hypothesis is discussed based on several assumptions. Simplifying the dissertation spinal cord is represented by 2millions of pyramidal axons. After the transection each of these axons has to make a growth and reconnect with exactly matching targets below the transection, in the same number. Axons are guided by neurotrophic factors and afterwards reconnected with neuroplasticity mechanisms. Assuming random reconnections, there are 2,000,000! permutations [Formula: see text] , therefore the chance of ideally random but correct reconnection of pyramidal axons with adequate targets is 1/2,000,000!. Apart from pyramidal axons, there are other axons, like extrapyramidal, sensory and associative. Empirical data and analysis of neurotrophic factors and organogenesis mechanisms may seem to slightly contradict the hypothesis, but strictly adhering to the second law of thermodynamics and entropy laws the full restoration of the transected cord may never be possible. Copyright © 2016 Elsevier Ltd. All rights reserved.

Transection of vessels in epiphyseal cartilage canals leads to osteochondrosis and osteochondrosis dissecans in the femoro-patellar joint of foals; a potential model of juvenile osteochondritis dissecans.

PubMed

Olstad, K; Hendrickson, E H S; Carlson, C S; Ekman, S; Dolvik, N I

2013-05-01

To transect blood vessels within epiphyseal cartilage canals and observe whether this resulted in ischaemic chondronecrosis, an associated focal delay in enchondral ossification [osteochondrosis (OC)] and pathological cartilage fracture [osteochondrosis dissecans (OCD)] in the distal femur of foals, with potential translational value to the pathogenesis of juvenile osteochondritis dissecans (JOCD) in children. Ten Norwegian Fjord Pony foals were operated at the age of 13-15 days. Two vessels supplying the epiphyseal growth cartilage of the lateral trochlear ridge of the left distal femur were transected in each foal. Follow-up examination was carried out from 1 to 49 days post-operatively and included plain radiography, macroscopic and histological examination. Transection of blood vessels within epiphyseal cartilage canals resulted in necrosis of vessels and chondrocytes, i.e., ischaemic chondronecrosis, in foals. Areas of ischaemic chondronecrosis were associated with a focal delay in enchondral ossification (OC) in foals examined 21 days or more after transection, and pathological cartilage fracture (OCD) in one foal examined 42 days after transection. The ischaemic hypothesis for the pathogenesis of OC has been reproduced experimentally in foals. There are several similarities between OCD in animals and JOCD in children. It should be investigated whether JOCD also occurs due to a focal failure in the cartilage canal blood supply, followed by ischaemic chondronecrosis. Copyright © 2013 Osteoarthritis Research Society International. Published by Elsevier Ltd. All rights reserved.

Mobile acoustic transects miss rare bat species: implications of survey method and spatio-temporal sampling for monitoring bats

PubMed Central

Wallrichs, Megan A.; Ober, Holly K.; McCleery, Robert A.

2017-01-01

Due to increasing threats facing bats, long-term monitoring protocols are needed to inform conservation strategies. Effective monitoring should be easily repeatable while capturing spatio-temporal variation. Mobile acoustic driving transect surveys (‘mobile transects’) have been touted as a robust, cost-effective method to monitor bats; however, it is not clear how well mobile transects represent dynamic bat communities, especially when used as the sole survey approach. To assist biologists who must select a single survey method due to resource limitations, we assessed the effectiveness of three acoustic survey methods at detecting species richness in a vast protected area (Everglades National Park): (1) mobile transects, (2) stationary surveys that were strategically located by sources of open water and (3) stationary surveys that were replicated spatially across the landscape. We found that mobile transects underrepresented bat species richness compared to stationary surveys across all major vegetation communities and in two distinct seasons (dry/cool and wet/warm). Most critically, mobile transects failed to detect three rare bat species, one of which is federally endangered. Spatially replicated stationary surveys did not estimate higher species richness than strategically located stationary surveys, but increased the rate at which species were detected in one vegetation community. The survey strategy that detected maximum species richness and the highest mean nightly species richness with minimal effort was a strategically located stationary detector in each of two major vegetation communities during the wet/warm season. PMID:29134138

Modified Liver Hanging Maneuver for En-bloc Right-sided Hepatectomy Combined with Total Caudate Lobectomy for Colon-Cancer Liver Metastasis and Hepatocellular Carcinoma.

PubMed

Hiroshima, Yukihiko; Matsuo, Kenichi; Kawaguchi, Daisuke; Kikuchi, Yutaro; Endo, Itaru; Koda, Keiji; Togo, Shinji; Hoffman, Robert M; Tanaka, Kuniya

2016-04-01

A right-sided hepatectomy with total caudate lobectomy is indicated for colorectal-cancer liver metastases (CLM) and hepatocellular carcinomas (HCC) located in the caudate lobe with extension to the right lobe of the liver. Caudate-lobe resection (i.e. segmentectomy 1 according to the Brisbane terminology) is one of the most difficult types of hepatectomy to carry out radically and safely. The deep portion of hepatic transection around the caudate lobe, hepatic veins and inferior vena cava is a critical source of massive bleeding. Prolonged transection can increase blood loss. We analyzed the outcome of 10 patients who underwent right-sided hepatectomy with caudate lobectomy using a modified liver hanging maneuver (mLHM) in comparison with 16 patients who underwent the operation without mLHM. Blood loss during liver transection and blood loss per unit area of cut surface were significantly less in the mLHM group (p=0.014 and 0.015, respectively). In patients diagnosed pathologically with liver impairment, transection time was significantly shorter in the mLHM group (p=0.038), as were red blood cell transfusion volume (p=0.042) and blood loss (p=0.049) during transection. Use of mLHM can potentially improve surgical outcomes by reducing blood loss and transection time, which are especially important for patients with liver impairment. Copyright© 2016 International Institute of Anticancer Research (Dr. John G. Delinassios), All rights reserved.

Cross-continental comparison of the functional composition and carbon allocation of two altitudinal forest transects in Ecuador and Rwanda.

NASA Astrophysics Data System (ADS)

Verbeeck, Hans; Bauters, Marijn; Bruneel, Stijn; Demol, Miro; Taveirne, Cys; Van Der Heyden, Dries; Kearsley, Elizabeth; Cizungu, Landry; Boeckx, Pascal

2017-04-01

Tropical forests are key actors in the global carbon cycle. Predicting future responses of these forests to global change is challenging, but important for global climate models. However, our current understanding of such responses is limited, due to the complexity of forest ecosystems and the slow dynamics that inherently form these systems. Our understanding of ecosystem ecology and functioning could greatly benefit from experimental setups including strong environmental gradients in the tropics, as found on altitudinal transects. We setup two such transects in both South-America and Central Africa, focussing on shifts in carbon allocation, forest structure, nutrient cycling and functional composition. The Ecuadorian transect has 16 plots (40 by 40 m) and ranges from 400 to 3000 m.a.s.l., and the Rwandan transect has 20 plots (40 by 40 m) from 1500 to 3000 m.a.s.l. All plots were inventoried and canopy, litter and soil were extensively sampled. By a cross-continental comparison of both transects, we will gain insight in how different or alike both tropical forests biomes are in their responses, and how universal the observed altitudinal adaption mechanisms are. This could provide us with vital information of the ecological responses of both biomes to future global change scenarios. Additionally, comparison of nutrient shifts and trait-based functional composition allows us to compare the biogeochemical cycles of African and South-American tropical forests.

Batrachochytrium dendrobatidis infection patterns among Panamanian amphibian species, habitats and elevations during epizootic and enzootic stages.

PubMed

Brem, Forrest M R; Lips, Karen R

2008-09-24

The pathogenic fungus Batrachochytrium dendrobatidis (Bd) has caused declines of many amphibian populations, yet the full course of the epizootic has rarely been observed in wild populations. We determined effects of elevation, habitat, and aquatic index (AI) on prevalence of infection among Panamanian amphibians sampled along 2 elevational transects. Amphibian populations on the Santa Fé transect (SFT) had declined in 2002, while those on the El Copé transect (ECT) were healthy until September 2004. In 2004 we sampled Bd along both transects, surveying the SFT 2 yr after decline, and surveying the ECT 4 mo prior to the arrival of Bd, during the epizootic, and 2 mo later. Overall prevalence of Bd along the ECT increased from 0.0 (95% CI 0.00-0.0003) to 0.51 (95% CI 0.48-0.55) over a 3 mo period, accompanied by significant decreases in amphibian abundance and species richness in all habitats. Prevalence of infection on the ECT was highest along riparian transects and at higher elevations, but not among levels of AI. Prevalence of infection on the SFT was highest in pool transects, and at higher elevations, but not among levels of AI. Riparian amphibian abundance and species richness also declined at SFT following detection of Bd in 2002. Variation among species, microenvironmental conditions, and the length of coexistence with Bd may contribute to observed differences in prevalence of Bd and in population response.

The effect of changes to the method of estimating the pollen count from aerobiological samples.

PubMed

Sikoparija, Branko; Pejak-Šikoparija, Tatjana; Radišić, Predrag; Smith, Matt; Soldevilla, Carmen Galán

2011-02-01

Pollen data have been recorded at Novi Sad in Serbia since 2000. The adopted method of producing pollen counts has been the use of five longitudinal transects that examine 19.64% of total sample surface. However, counting five transects is time consuming and so the main objective of this study is to investigate whether reducing the number to three or even two transects would have a significant effect on daily average and bi-hourly pollen concentrations, as well as the main characteristics of the pollen season and long-term trends. This study has shown that there is a loss of accuracy in daily average and bi-hourly pollen concentrations (an increase in % ERROR) as the sub-sampling area is reduced from five to three or two longitudinal transects. However, this loss of accuracy does not impact on the main characteristics of the season or long-term trends. As a result, this study can be used to justify changing the sub-sampling method used at Novi Sad from five to three longitudinal transects. The use of two longitudinal transects has been ruled out because, although quicker, the counts produced: (a) had the greatest amount of % ERROR, (b) altered the amount of influence of the independent variable on the dependent variable (the slope in regression analysis) and (c) the total sampled surface (7.86%) was less than the minimum requirement recommended by the European Aerobiology Society working group on Quality Control (at least 10% of total slide area).

L-Dopa effect on frequency-dependent depression of the H-reflex in adult rats with complete spinal cord transection.

PubMed

Liu, Hao; Skinner, Robert D; Arfaj, Ahmad; Yates, Charlotte; Reese, Nancy B; Williams, Keith; Garcia-Rill, Edgar

2010-10-30

This study investigated whether l-dopa (DOPA), locomotor-like passive exercise (Ex) using a motorized bicycle exercise trainer (MBET), or their combination in adult rats with complete spinal cord transection (Tx) preserves and restores low frequency-dependent depression (FDD) of the H-reflex. Adult Sprague-Dawley rats (n=56) transected at T8-9 had one of five treatments beginning 7 days after transection: Tx (transection only), Tx+Ex, Tx+DOPA, Tx+Ex+DOPA, and control (Ctl, no treatment) groups. After 30 days of treatment, FDD of the H-reflex was tested. Stimulation of the tibial nerve at 0.2, 1, 5, and 10Hz evoked an H-reflex that was recorded from plantar muscles of the hind paw. No significant differences were found at the stimulation rate of 1Hz. However, at 5Hz, FDD of the H-reflex in the Tx+Ex, Tx+DOPA and Ctl groups was significantly different from the Tx group (p<0.01). At 10Hz, all of the treatment groups were significantly different from the Tx group (p<0.01). No significant difference was identified between the Ctl and any of the treatment groups. These results suggest that DOPA significantly preserved and restored FDD after transection as effectively as exercise alone or exercise in combination with DOPA. Thus, there was no additive benefit when DOPA was combined with exercise. Copyright © 2010 Elsevier Inc. All rights reserved.

Overlapping Mechanisms of Peripheral Nerve Regeneration and Angiogenesis Following Sciatic Nerve Transection

PubMed Central

Wang, Hongkui; Zhu, Hui; Guo, Qi; Qian, Tianmei; Zhang, Ping; Li, Shiying; Xue, Chengbin; Gu, Xiaosong

2017-01-01

Peripheral nervous system owns the ability of self-regeneration, mainly in its regenerative microenvironment including vascular network reconstruction. More recently, more attentions have been given to the close relationship between tissue regeneration and angiogenesis. To explore the overlap of molecular mechanisms and key regulation molecules between peripheral nerve regeneration and angiogenesis post peripheral nerve injury, integrative and bioinformatic analysis was carried out for microarray data of proximal stumps after sciatic nerve transection in SD rats. Nerve regeneration and angiogenesis were activated at 1 day immediately after sciatic nerve transection simultaneously. The more obvious changes of transcription regulators and canonical pathways suggested a phase transition between 1 and 4 days of both nerve regeneration and angiogenesis after sciatic nerve transection. Furthermore, 16 differentially expressed genes participated in significant biological processes of both nerve regeneration and angiogenesis, a few of which were validated by qPCR and immunofluorescent staining. It was demonstrated that STAT3, EPHB3, and Cdc42 co-expressed in Schwann cells and vascular endothelial cells to play a key role in regulation of nerve regeneration and angiogenesis simultaneously response to sciatic nerve transection. We provide a framework for understanding biological processes and precise molecular correlations between peripheral nerve regeneration and angiogenesis after peripheral nerve transection. Our work serves as an experimental basis and a valuable resource to further understand molecular mechanisms that define nerve injury-induced micro-environmental variation for achieving desired peripheral nerve regeneration. PMID:29085283

Overlapping Mechanisms of Peripheral Nerve Regeneration and Angiogenesis Following Sciatic Nerve Transection.

PubMed

Wang, Hongkui; Zhu, Hui; Guo, Qi; Qian, Tianmei; Zhang, Ping; Li, Shiying; Xue, Chengbin; Gu, Xiaosong

2017-01-01

Peripheral nervous system owns the ability of self-regeneration, mainly in its regenerative microenvironment including vascular network reconstruction. More recently, more attentions have been given to the close relationship between tissue regeneration and angiogenesis. To explore the overlap of molecular mechanisms and key regulation molecules between peripheral nerve regeneration and angiogenesis post peripheral nerve injury, integrative and bioinformatic analysis was carried out for microarray data of proximal stumps after sciatic nerve transection in SD rats. Nerve regeneration and angiogenesis were activated at 1 day immediately after sciatic nerve transection simultaneously. The more obvious changes of transcription regulators and canonical pathways suggested a phase transition between 1 and 4 days of both nerve regeneration and angiogenesis after sciatic nerve transection. Furthermore, 16 differentially expressed genes participated in significant biological processes of both nerve regeneration and angiogenesis, a few of which were validated by qPCR and immunofluorescent staining. It was demonstrated that STAT3, EPHB3, and Cdc42 co-expressed in Schwann cells and vascular endothelial cells to play a key role in regulation of nerve regeneration and angiogenesis simultaneously response to sciatic nerve transection. We provide a framework for understanding biological processes and precise molecular correlations between peripheral nerve regeneration and angiogenesis after peripheral nerve transection. Our work serves as an experimental basis and a valuable resource to further understand molecular mechanisms that define nerve injury-induced micro-environmental variation for achieving desired peripheral nerve regeneration.

A standardized safe hepatectomy; selective Glissonean transection using endolinear stapling devices.

PubMed

Fujii, Masahiko; Shimada, Mitsuo; Satoru, Imura; Morine, Yuji; Ikemoto, Tetsuya; Soejima, Yuji

2007-01-01

Selective clamping of Glisson's pedicle at the hilum is effective for systematized hepatectomy. Because of the development of stapling devices, a Glissonean transection using a surgical stapler has been used widely. However, the risk of accidental stapling of the biliary confluence still remains. In this paper we report about a case that underwent selective Glissonean transection using an endolinear stapling device. We used this standardized technique in five patients without any major complications. The particular case to which we refer was a 71-year-old woman with hepatocellular carcinoma in the right lobe. The anterior and posterior branches of Glisson's pedicle were independently divided using an endolinear stapling device. The right hepatic lobectomy was achieved with little bleeding and in addition there was a shortened operation time and the postoperative course was uneventful. In the patient with liver cirrhosis, postoperative complications often related to liver failure. We herein advocate a standardized safe hepatectomy using endolinear stapling devices. We believe that the shortened operative time and decreased risk of complications by selective Glissonean transection as well as hepatic vein transection using stapling devices contribute to the improved short-term outcome.

Healing process of vascular cutting edge using an Nd:YAG laser bipolar dissector.

PubMed

Morita, T; Ishida, K; Ookubo, K; Tanaka, K; Nakamura, H; Daikuzono, N

1995-08-01

The wound healing process was histopathologically investigated in a rabbit femoral artery (n = 48) after transection using a laser bipolar dissector (LBD, 1064nm the Nd:YAG bipolar contact laser) with laser power of 13W in 0.5-sec pulses. The cutting edges were harvested immediately (n = 6) and at 1 (n = 6), 4 (n = 6), and 7 (n = 6) days, 2 (n = 6), 3 (n = 6), and 4 (n = 6) weeks, and 6 months (n = 6), and evaluated by light microscopy. During the postoperative period, no perforation was seen in the 48 transected sites with the LBD. The healing process after LBD transection was accomplished within 2 weeks by organization of the intraluminal thrombus and by the formation of granulation tissue outside the adventitia of vessels. Characteristic morphological changes after LBD transection were recognized in the tapering area, i.e., cartilage and bone formation. Cartilaginous foci (n = 6) were observed in the media at 4 weeks after transection, and osseous foci (n = 3) in subendothelial space at 6 months. These observations may suggest that the heterotopic cartilaginous and osseous metaplasia of a vessel wall may be a result of the biostimulative effects of the Nd:YAG laser.

Transection of the innominate artery for tracheomalacia caused by persistent opisthotonus.

PubMed

Tsugawa, Chikara; Ono, Yasuyuki; Nishijima, Eiji; Takamizawa, Shigeru; Satoh, Shiiki; Muraji, Toshihiro

2004-01-01

Patients with cerebral palsy often develop opisthotonus. The trachea may be pinched between the innominate artery and the cervical spine. This compartmentalized thoracic inlet results in severe tracheomalacia. We successfully released tracheal compression by transection of the innominate artery. In case 1, a 4-year-old girl with cerebral palsy and opisthotonus was admitted due to respiratory distress. Bronchoscopy revealed severe tracheomalacia 2 cm above the carina. An endotracheal stent was placed through a tracheostomy. Two months later, she developed tracheal bleeding and bronchoscopy demonstrated a trachea-innominate artery fistula. Magnetic resonance brain angiography showed the presence of Willis' circle, and transection of the innominate artery was justified. This was done through a low cervical skin incision. In case 2, a 6-year-old boy with cerebral palsy and opisthotonus had long-standing respiratory distress. Ventilatory support did not resolve the symptoms. The innominate artery was transected in the same fashion as in the first case. Case 1 has been free from respiratory distress for 4 months and case 2 for 3 years. Our experience suggests that the combination of tracheomalacia, opisthotonus causes severe respiratory distress. Transection of the innominate artery is a useful therapeutic strategy to release airway obstruction in this condition.

Estimating Dungeness crab (Cancer magister) abundance: Crab pots and dive transects compared

USGS Publications Warehouse

Taggart, S. James; O'Clair, Charles E.; Shirley, Thomas C.; Mondragon, Jennifer

2004-01-01

Dungeness crabs (Cancer magister) were sampled with commercial pots and counted by scuba divers on benthic transects at eight sites near Glacier Bay, Alaska. Catch per unit of effort (CPUE) from pots was compared to the density estimates from dives to evaluate the bias and power of the two techniques. Yearly sampling was conducted in two seasons: April and September, from 1992 to 2000. Male CPUE estimates from pots were significantly lower in April than in the following September; a step-wise regression demonstrated that season accounted for more of the variation in male CPUE than did temperature. In both April and September, pot sampling was significantly biased against females. When females were categorized as ovigerous and nonovigerous, it was clear that ovigerous females accounted for the majority of the bias because pots were not biased against nonovigerous females. We compared the power of pots and dive transects in detecting trends in populations and found that pots had much higher power than dive transects. Despite their low power, the dive transects were very useful for detecting bias in our pot sampling and in identifying the optimal times of year to sample so that pot bias could be avoided.

Advancing drug delivery systems for the treatment of multiple sclerosis.

PubMed

Tabansky, Inna; Messina, Mark D; Bangeranye, Catherine; Goldstein, Jeffrey; Blitz-Shabbir, Karen M; Machado, Suly; Jeganathan, Venkatesh; Wright, Paul; Najjar, Souhel; Cao, Yonghao; Sands, Warren; Keskin, Derin B; Stern, Joel N H

2015-12-01

Multiple sclerosis (MS) is a chronic inflammatory autoimmune disease of the central nervous system. It is characterized by demyelination of neurons and loss of neuronal axons and oligodendrocytes. In MS, auto-reactive T cells and B cells cross the blood-brain barrier (BBB), causing perivenous demyelinating lesions that form multiple discrete inflammatory demyelinated plaques located primarily in the white matter. In chronic MS, cortical demyelination and progressive axonal transections develop. Treatment for MS can be stratified into disease-modifying therapies (DMTs) and symptomatic therapy. DMTs aim to decrease circulating immune cells or to prevent these cells from crossing the BBB and reduce the inflammatory response. There are currently 10 DMTs approved for the relapsing forms of MS; these vary with regard to their efficacy, route and frequency of administration, adverse effects, and toxicity profile. Better drug delivery systems are being developed in order to decrease adverse effects, increase drug efficacy, and increase patient compliance through the direct targeting of pathologic cells. Here, we address the uses and benefits of advanced drug delivery systems, including nanoparticles, microparticles, fusion antibodies, and liposomal formulations. By altering the properties of therapeutic particles and enhancing targeting, breakthrough drug delivery technologies potentially applicable to multiple disease treatments may rapidly emerge.

Groundwater and surface-water interaction, water quality, and processes affecting loads of dissolved solids, selenium, and uranium in Fountain Creek near Pueblo, Colorado, 2012–2014

USGS Publications Warehouse

Arnold, L. Rick; Ortiz, Roderick F.; Brown, Christopher R.; Watts, Kenneth R.

2016-11-28

In 2012, the U.S. Geological Survey, in cooperation with the Arkansas River Basin Regional Resource Planning Group, initiated a study of groundwater and surface-water interaction, water quality, and loading of dissolved solids, selenium, and uranium to Fountain Creek near Pueblo, Colorado, to improve understanding of sources and processes affecting loading of these constituents to streams in the Arkansas River Basin. Fourteen monitoring wells were installed in a series of three transects across Fountain Creek near Pueblo, and temporary streamgages were established at each transect to facilitate data collection for the study. Groundwater and surface-water interaction was characterized by using hydrogeologic mapping, groundwater and stream-surface levels, groundwater and stream temperatures, vertical hydraulic-head gradients and ratios of oxygen and hydrogen isotopes in the hyporheic zone, and streamflow mass-balance measurements. Water quality was characterized by collecting periodic samples from groundwater, surface water, and the hyporheic zone for analysis of dissolved solids, selenium, uranium, and other selected constituents and by evaluating the oxidation-reduction condition for each groundwater sample under different hydrologic conditions throughout the study period. Groundwater loads to Fountain Creek and in-stream loads were computed for the study area, and processes affecting loads of dissolved solids, selenium, and uranium were evaluated on the basis of geology, geochemical conditions, land and water use, and evapoconcentration.During the study period, the groundwater-flow system generally contributed flow to Fountain Creek and its hyporheic zone (as a single system) except for the reach between the north and middle transects. However, the direction of flow between the stream, the hyporheic zone, and the near-stream aquifer was variable in response to streamflow and stage. During periods of low streamflow, Fountain Creek generally gained flow from groundwater. However, during periods of high streamflow, the hydraulic gradient between groundwater and the stream temporarily reversed, causing the stream to lose flow to groundwater.Concentrations of dissolved solids, selenium, and uranium in groundwater generally had greater spatial variability than surface water or hyporheic-zone samples, and constituent concentrations in groundwater generally were greater than in surface water. Constituent concentrations in the hyporheic zone typically were similar to or intermediate between concentrations in groundwater and surface water. Concentrations of dissolved solids, selenium, uranium, and other constituents in groundwater samples collected from wells located on the east side of the north monitoring well transect were substantially greater than for other groundwater, surface-water, and hyporheic-zone samples. With one exception, groundwater samples collected from wells on the east side of the north transect exhibited oxic to mixed (oxic-anoxic) conditions, whereas most other groundwater samples exhibited anoxic to suboxic conditions. Concentrations of dissolved solids, selenium, and uranium in surface water generally increased in a downstream direction along Fountain Creek from the north transect to the south transect and exhibited an inverse relation to streamflow with highest concentration occurring during periods of low streamflow and lowest concentrations occurring during periods of high streamflow.Groundwater loads of dissolved solids, selenium, and uranium to Fountain Creek were small because of the small amount of groundwater flowing to the stream under typical low-streamflow conditions. In-stream loads of dissolved solids, selenium, and uranium in Fountain Creek varied by date, primarily in relation to streamflow at each transect and were much larger than computed constituent loads from groundwater. In-stream loads generally decreased with decreases in streamflow and increased as streamflow increased. In-stream loads of dissolved solids and selenium increased between the north and middle transects but generally decreased between the middle and south transects. By contrast, uranium loads generally decreased between the north and middle transects but increased between the middle and south transects. In-stream load differences between transects appear primarily to be related to differences in streamflow. However, because groundwater typically flows to Fountain Creek under low-flow conditions, and groundwater has greater concentrations of dissolved solids, selenium, and uranium than surface water in Fountain Creek, increases in loads between transects likely are affected by inflow of groundwater to the stream, which can account for a substantial proportion of the in-stream load difference between transects. When loads decreased between transects, the primary cause likely was decreased streamflow as a result of losses to groundwater and flow through the hyporheic zone. However, localized groundwater inflow likely attenuated the magnitude by which the in-stream loads decreased.The combination of localized soluble geologic sources and oxic conditions likely is the primary reason for the occurrence of high concentrations of dissolved solids, selenium, and uranium in groundwater on the east side of the north monitoring well transect. To evaluate conditions potentially responsible for differences in water quality and redox conditions, physical characteristics such as depth to water, saturated thickness, screen depth below the water table, screen height above bedrock, and aquifer hydraulic conductivity were compared by using Wilcoxon rank-sum tests. Results indicated no significant difference between depth to water, screen height above bedrock, and hydraulic conductivity for groundwater samples collected from wells on the east side of the north transect and groundwater samples from all other wells. However, saturated thickness and screen depth below the water table both were significantly smaller for groundwater samples collected from wells on the east side of the north transect than for groundwater samples from other wells, indicating that these characteristics might be related to the elevated constituent concentrations found at that location. Similarly, saturated thickness and screen depth below the water table were significantly smaller for groundwater samples under oxic or mixed (oxic-anoxic) conditions than for those under anoxic to suboxic conditions.The greater constituent concentrations at wells on the east side of the north transect also could, in part, be related to groundwater discharge from an unnamed alluvial drainage located directly upgradient from that location. Although the quantity and quality of water discharging from the drainage is not known, the drainage appears to collect water from a residential area located upgradient to the east of the wells, and groundwater could become concentrated in nitrate and other dissolved constituents before flowing through the drainage. High levels of nitrate, whether from anthropogenic or natural geologic sources, could promote more soluble forms of selenium and other constituents by affecting the redox condition of groundwater. Whether oxic conditions at wells on the east side of the north transect are the result of physical characteristics or of groundwater inflow from the alluvial drainage, the oxic conditions appear to cause increased dissolution of minerals from the shallow shale bedrock at that location. Because ratios of hydrogen and oxygen isotopes indicate evaporation likely has not had a substantial effect on groundwater, constituent concentrations at that location likely are not the result of evapoconcentration. 

Long-Term Effects of Beach Nourishment on the Benthic Fauna of Panama City Beach, Florida.

DTIC Science & Technology

1982-01-01

gradual. The continental shelf in this area is not nearly as wide as it is in most areas of the Gulf of Mexico. i0 - ------ The segment of gulf...Lookout Street and Spyglass Street; transect 4 is offshore of the Holiday Inn West; transect 5 is offshore of the Fiesta Motel; transect 6 is off- shore...Region, Puerto Rico and the Virgin Islands," Atlanta, Ga., 1971. WHITTAKER, R.H., "Gradient Analysis of Vegetation," Biological Review, Vol. 49, 1967

Role of spared pathways in locomotor recovery after body-weight-supported treadmill training in contused rats.

PubMed

Singh, Anita; Balasubramanian, Sriram; Murray, Marion; Lemay, Michel; Houle, John

2011-12-01

Body-weight-supported treadmill training (BWSTT)-related locomotor recovery has been shown in spinalized animals. Only a few animal studies have demonstrated locomotor recovery after BWSTT in an incomplete spinal cord injury (SCI) model, such as contusion injury. The contribution of spared descending pathways after BWSTT to behavioral recovery is unclear. Our goal was to evaluate locomotor recovery in contused rats after BWSTT, and to study the role of spared pathways in spinal plasticity after BWSTT. Forty-eight rats received a contusion, a transection, or a contusion followed at 9 weeks by a second transection injury. Half of the animals in the three injury groups were given BWSTT for up to 8 weeks. Kinematics and the Basso-Beattie-Bresnahan (BBB) test assessed behavioral improvements. Changes in Hoffmann-reflex (H-reflex) rate depression property, soleus muscle mass, and sprouting of primary afferent fibers were also evaluated. BWSTT-contused animals showed accelerated locomotor recovery, improved H-reflex properties, reduced muscle atrophy, and decreased sprouting of small caliber afferent fibers. BBB scores were not improved by BWSTT. Untrained contused rats that received a transection exhibited a decrease in kinematic parameters immediately after the transection; in contrast, trained contused rats did not show an immediate decrease in kinematic parameters after transection. This suggests that BWSTT with spared descending pathways leads to neuroplasticity at the lumbar spinal level that is capable of maintaining locomotor activity. Discontinuing training after the transection in the trained contused rats abolished the improved kinematics within 2 weeks and led to a reversal of the improved H-reflex response, increased muscle atrophy, and an increase in primary afferent fiber sprouting. Thus continued training may be required for maintenance of the recovery. Transected animals had no effect of BWSTT, indicating that in the absence of spared pathways this training paradigm did not improve function.

Mollusks of Manuel Antonio National Park, Pacific Costa Rica.

PubMed

Willis, S; Cortés, J

2001-12-01

The mollusks in Manuel Antonio National Park on the central section of the Pacific coast of Costa Rica were studied along thirty-six transects done perpendicular to the shore, and by random sampling of subtidal environments, beaches and mangrove forest. Seventy-four species of mollusks belonging to three classes and 40 families were found: 63 gastropods, 9 bivalves and 2 chitons, during this study in 1995. Of these, 16 species were found only as empty shells (11) or inhabited by hermit crabs (5). Forty-eight species were found at only one locality. Half the species were found at one site, Puerto Escondido. The most diverse habitat was the low rocky intertidal zone. Nodilittorina modesta was present in 34 transects and Nerita scabricosta in 30. Nodilittorina aspera had the highest density of mollusks in the transects. Only four transects did not clustered into the four main groups. The species composition of one cluster of transects is associated with a boulder substrate, while another cluster of transects associates with site. Two clusters were not associated to any of the factors recorded. Some species were present in previous studies but absent in 1995, while others were absent in the previous studies but found in 1995. For example, Siphonaria gigas was present in 1995 in many transects with a relatively high density, but absent in 1962, probably due to human predation before the establishment of the park. Including this study, a total of 97 species of mollusks in three classes and 45 families have been reported from Manuel Antonio National Park. Sixty-nine species are new reports for the area: 53 gastropods, 14 bivalves and 2 chitons. There are probably more species of mollusks at Manuel Antonio National Park, than the 97 reported here, because some areas have not been adequately sampled (e.g., deep environments) and many micro-mollusks could not be identified.

ACL/MCL transection affects knee ligament insertion distance of healing and intact ligaments during gait in the Ovine model.

PubMed

Tapper, Janet E; Funakoshi, Yusei; Hariu, Mitsuhiro; Marchuk, Linda; Thornton, Gail M; Ronsky, Janet L; Zernicke, Ron; Shrive, Nigel G; Frank, Cyril B

2009-08-25

The objective of this study was to assess the impact of combined transection of the anterior cruciate and medial collateral ligaments on the intact and healing ligaments in the ovine stifle joint. In vivo 3D stifle joint kinematics were measured in eight sheep during treadmill walking (accuracy: 0.4+/-0.4mm, 0.4+/-0.4 degrees ). Kinematics were measured with the joint intact and at 2, 4, 8, 12, 16 and 20 weeks after either surgical ligament transection (n=5) or sham surgery without transection (n=3). After sacrifice at 20 weeks, the 3D subject-specific bone and ligament geometry were digitized, and the 3D distances between insertions (DBI) of ligaments during the dynamic in vivo motion were calculated. Anterior cruciate ligament/medial collateral ligament (ACL/MCL) transection resulted in changes in the DBI of not only the transected ACL, but also the intact lateral collateral ligament (LCL) and posterior cruciate ligament (PCL), while the DBI of the transected MCL was not significantly changed. Increases in the maximal ACL DBI (2 week: +4.2mm, 20 week: +5.7mm) caused increases in the range of ACL DBI (2 week: 3.6mm, 20 week: +3.8mm) and the ACL apparent strain (2 week: +18.9%, 20 week: +24.0%). Decreases in the minimal PCL DBI (2 week: -3.2mm, 20 week: -4.3mm) resulted in increases in the range of PCL DBI (2 week: +2.7mm, 20 week: +3.2mm). Decreases in the maximal LCL DBI (2 week: -1.0mm, 20 week: -2.0mm) caused decreased LCL apparent strain (2 week: -3.4%, 20 week: -6.9%). Changes in the mechanical environment of these ligaments may play a significant role in the biological changes observed in these ligaments.

Axon regeneration can facilitate or suppress hindlimb function after olfactory ensheathing glia transplantation.

PubMed

Takeoka, Aya; Jindrich, Devin L; Muñoz-Quiles, Cintia; Zhong, Hui; van den Brand, Rubia; Pham, Daniel L; Ziegler, Matthias D; Ramón-Cueto, Almudena; Roy, Roland R; Edgerton, V Reggie; Phelps, Patricia E

2011-03-16

Reports based primarily on anatomical evidence suggest that olfactory ensheathing glia (OEG) transplantation promotes axon regeneration across a complete spinal cord transection in adult rats. Based on functional, electrophysiological, and anatomical assessments, we found that OEG promoted axon regeneration across a complete spinal cord transection and that this regeneration altered motor responses over time. At 7 months after transection, 70% of OEG-treated rats showed motor-evoked potentials in hindlimb muscles after transcranial electric stimulation. Furthermore, a complete spinal cord retransection performed 8 months after injury demonstrated that this axon regeneration suppressed locomotor performance and decreased the hypersensitive hindlimb withdrawal response to mechanical stimulation. OEG transplantation alone promoted reorganization of lumbosacral locomotor networks and, when combined with long-term training, enhanced some stepping measures. These novel findings demonstrate that OEG promote regeneration of mature axons across a complete transection and reorganization of spinal circuitry, both of which contribute to sensorimotor function.

Axon Regeneration Can Facilitate or Suppress Hindlimb Function after Olfactory Ensheathing Glia Transplantation

PubMed Central

Takeoka, Aya; Jindrich, Devin L.; Muñoz-Quiles, Cintia; Zhong, Hui; van den Brand, Rubia; Pham, Daniel L.; Ziegler, Matthias D.; Ramón-Cueto, Almudena; Roy, Roland R.; Edgerton, V. Reggie

2011-01-01

Reports based primarily on anatomical evidence suggest that olfactory ensheathing glia (OEG) transplantation promotes axon regeneration across a complete spinal cord transection in adult rats. Based on functional, electrophysiological, and anatomical assessments, we found that OEG promoted axon regeneration across a complete spinal cord transection and that this regeneration altered motor responses over time. At 7 months after transection, 70% of OEG-treated rats showed motor-evoked potentials in hindlimb muscles after transcranial electric stimulation. Furthermore, a complete spinal cord retransection performed 8 months after injury demonstrated that this axon regeneration suppressed locomotor performance and decreased the hypersensitive hindlimb withdrawal response to mechanical stimulation. OEG transplantation alone promoted reorganization of lumbosacral locomotor networks and, when combined with long-term training, enhanced some stepping measures. These novel findings demonstrate that OEG promote regeneration of mature axons across a complete transection and reorganization of spinal circuitry, both of which contribute to sensorimotor function. PMID:21411671

[Urethroplasty with transection of urethral orifice and preservation and lengthening of urethral plate: highly applicable to the treatment of hypospadias].

PubMed

Wang, Wen-Min; Qiu, Wei-Feng; Qian, Chong

2010-07-01

To explore the feasibility of urethroplasty with transection of the urethral orifice and preservation and lengthening of the urethral plate in the treatment of hypospadias. Forty-eight patients with hypospadias (18 of the coronal type, 21 the penile type, 8 the penoscrotal type and 1 the perineal type) underwent urethroplasty with transection of the urethral orifice and preservation and lengthening of the urethral plate. The surgical effects were observed by following up the patients for 3-27 months. One-stage surgical success was achieved in 44 of the cases, with satisfactory functional and cosmetic results but no complications. Two cases developed urinary fistula and another 2 urethral stricture, but all cured by the second surgery. Urethroplasty with transection of the urethral orifice and preservation and lengthening of the urethral plate is a simple, safe and effective surgical procedure for the treatment of hypospadias.

The Sidi Ifni transect across the rifted margin of Morocco (Central Atlantic): Vertical movements constrained by low-temperature thermochronology

NASA Astrophysics Data System (ADS)

Charton, Rémi; Bertotti, Giovanni; Arantegui, Angel; Bulot, Luc

2018-05-01

The occurrence of km-scale exhumations during syn- and post-rift stages has been documented along Atlantic continental margins, which are also characterised by basins undergoing substantial subsidence. The relationship between the exhuming and subsiding domains is poorly understood. In this study, we reconstruct the evolution of a 50 km long transect across the Moroccan rifted margin from the western Anti-Atlas to the Atlantic basin offshore the city of Sidi Ifni. Low-temperature thermochronology data from the Sidi Ifni area document a ca. 8 km exhumation between the Permian and the Early/Middle Jurassic. The related erosion fed sediments to the subsiding Mesozoic basin to the NW. Basement rocks along the transect were subsequently buried by 1-2 km between the Late Jurassic and the Early Cretaceous. From late Early/Late Cretaceous onwards, rocks present along the transect were exhumed to their present-day position.

E-4 Central Kentucky to the Carolina Trough

USGS Publications Warehouse

Rankin, Douglas W.; Dillon, William P.; Black, D.F.B.; Boyer, S.E.; Daniels, David L.; Goldsmith, R.; Grow, J.A.; Horton, J. Wright; Hutchinson, Deborah R.; Klitgord, Kim D.; McDowell, R.C.; Milton, D.J.; Owens, J.P.; Phillips, Jeffrey D.; Bayer, K.C.; Butler, John R.; Elliott, D.W.; Milici, Robert C.

1991-01-01

E-4 is one of eight Geodynamics transects that cross the Atlantic margin of North America between Georgia and Newfoundland. Five of the transects are in the United States and three are in Canada. Transect E-4, which is 110 km wide and more than 1,100 km long, extends from the stable North American craton just west of the Grenville front near Lexington, Kentucky southeastward across Cape Fear, North Carolina, on the Atlantic coast to oceanic crust east of the Blake Spur magnetic anomaly. Like all of the other U.S. Atlantic coast transects, it crosses Cambrian and Jurassic continental margins of North America as well as the Appalachian orogen. The display, based upon published information, portrays the geology, tectonic style and geophysical expression of this segment of the eastern North American continental margin and interprets its Phanerozoic history. The Decade of North American Geology 1983 geologic time scale (Palmer, 1983) is used throughout the display and text.

Biomechanical implications of lumbar spinal ligament transection.

PubMed

Von Forell, Gregory A; Bowden, Anton E

2014-11-01

Many lumbar spine surgeries either intentionally or inadvertently damage or transect spinal ligaments. The purpose of this work was to quantify the previously unknown biomechanical consequences of isolated spinal ligament transection on the remaining spinal ligaments (stress transfer), vertebrae (bone remodelling stimulus) and intervertebral discs (disc pressure) of the lumbar spine. A finite element model of the full lumbar spine was developed and validated against experimental data and tested in the primary modes of spinal motion in the intact condition. Once a ligament was removed, stress increased in the remaining spinal ligaments and changes occurred in vertebral strain energy, but disc pressure remained similar. All major biomechanical changes occurred at the same spinal level as the transected ligament, with minor changes at adjacent levels. This work demonstrates that iatrogenic damage to spinal ligaments disturbs the load sharing within the spinal ligament network and may induce significant clinically relevant changes in the spinal motion segment.

Environmental drivers of epibenthic megafauna on a deep temperate continental shelf: A multiscale approach

NASA Astrophysics Data System (ADS)

Lacharité, Myriam; Metaxas, Anna

2018-03-01

Evaluating the role of abiotic factors in influencing the distribution of deep-water (>75-100 m depth) epibenthic megafaunal communities at mid-to-high latitudes is needed to estimate effects of environmental change, and support marine spatial planning since these factors can be effectively mapped. Given the disparity in scales at which these factors operate, incorporating multiple spatial and temporal scales is necessary. In this study, we determined the relative importance of 3 groups of environmental drivers at different scales (sediment, geomorphology, and oceanography) on epibenthic megafauna on a deep temperate continental shelf in the eastern Gulf of Maine (northwest Atlantic). Twenty benthic photographic transects (range: 611-1021 m; total length surveyed: 18,902 m; 996 images; average of 50 ± 16 images per transect) were performed in July and August 2009 to assess the abundance, composition and diversity of these communities. Surficial geology was assessed using seafloor imagery processed with a novel approach based on computer vision. A bathymetric terrain model (horizontal resolution: 100 m) was used to derive bathymetric variability in the vicinity of transects (1.5, 5 km). Oceanography at the seafloor (temperature, salinity, current speed, current direction) over 10 years (1999-2008) was determined using empirical (World Ocean Database 2013) and modelled data (Finite-Volume Community Ocean Model; 45 vertical layers; horizontal resolution: 1.7-9.5 km). The relative influence of environmental drivers differed between community traits. Abundance was enhanced primarily by swift current speeds, while higher diversity was observed in coarser and more heterogeneous substrates. In both cases, the role of geomorphological features was secondary to these drivers. Environmental variables were poor predictors of change in community composition at the scale of the eastern Gulf of Maine. This study demonstrated the need for explicitly incorporating scales into habitat modelling studies in these regions, and targeting specific drivers for community traits of interest.

Surface-Wave Tomography of Yucca Flat, Nevada

NASA Astrophysics Data System (ADS)

Toney, L. D.; Abbott, R. E.; Knox, H. A.; Preston, L. A.; Hoots, C. R.

2016-12-01

In 2015, Sandia National Laboratories conducted an active-source seismic survey of Yucca Flat, Nevada, on the Nevada National Security Site. The Yucca Flat basin hosted over 900 nuclear tests between 1951 and 1992. Data from this survey will help characterize seismic propagation effects of the area, informing models for the next phase of the Source Physics Experiments. The survey source was a 13,000-kg weight-drop at 91 locations along a 19-km N-S transect and 56 locations along an 11-km E-W transect. Over 350 three-component 2-Hz geophones were variably spaced at 10, 20, and 100 m along each line. We employed roll-along survey geometry to ensure 10-m receiver spacing within 2 km of the source. Phase velocity surface-wave analysis via the refraction-microtremor (ReMi) method was previously performed on this data in order to obtain an S-wave velocity model of the subsurface. However, the results of this approach were significantly impacted in areas where ray paths were proximate to underground nuclear tests, resulting in a spatially incomplete model. We have processed the same data utilizing group velocities and the multiple filter technique (MFT), with the hope that the propagation of wave groups is less impacted by the disrupted media surrounding former tests. We created a set of 30 Gaussian band-pass filters with scaled relative passbands and central frequencies ranging from 1 to 50 Hz. We picked fundamental Rayleigh wave arrivals from the filtered data; these picks were then inverted for 2D S-wave velocity along the transects. The new S-wave velocity model will be integrated with previous P-wave tomographic results to yield a more complete model of the subsurface structure of Yucca Flat. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's National Nuclear Security Administration under contract DE-AC04-94AL85000.

Ecological risk assessment for residual coal fly ash at Watts Bar Reservoir, Tennessee: Limited alteration of riverine-reservoir benthic invertebrate community following dredging of ash-contaminated sediment.

PubMed

Buys, David J; Stojak, Amber R; Stiteler, William; Baker, Tyler F

2015-01-01

Benthic invertebrate communities were assessed after the December 2008 release of approximately 4.1 million m(3) coal fly ash from a disposal dredge cell at the Tennessee Valley Authority (TVA) Kingston Fossil Plant on Watts Bar Reservoir in Roane County, Tennessee, USA. Released ash filled the adjacent embayments and the main channel of the Emory River, migrating into reaches of the Emory, Clinch, and Tennessee Rivers. Dredging was completed in summer 2010, and the benthic community sampling was conducted in December 2010. This study is part of a series that supported an Ecological Risk Assessment for the Kingston site. Benthic invertebrate communities were sampled at transects spread across approximately 20 miles of river that includes both riverine and reservoirlike conditions. Community composition was assessed on a grab sample and transect basis across multiple cross-channel transects to gain an understanding of the response of the benthic community to a fly ash release of this magnitude. This assessment used invertebrate community metrics, similarity analysis, geospatial statistics, and correlations with sediment chemistry and habitat. The community composition was reflective of a reservoir system, with dominant taxa being insect larva, bivalves, and aquatic worms. Most community metric results were similar for ash-impacted areas and upstream reference areas. Variation in the benthic community was correlated more with habitat than with sediment chemistry or residual ash. Other studies have reported that a benthic community can take several years to a decade to recover from ash or ash-related constituents. Although released ash undoubtedly had some initial impacts on the benthic community in this study, the severity of these effects appears to be limited to the initial smothering of the organisms followed by a rapid response and the initial start of recovery postdredging. © 2014 SETAC.

Integrated Geophysical Models Extending From The Craton Across The Gulf Coast Region Of The USA

NASA Astrophysics Data System (ADS)

Keller, G. R.; Mickus, K. L.; Thomas, W. A.

2017-12-01

In spite of decades of industry geophysical studies in the US Gulf Coast region, its crustal and uppermost mantle structure remain poorly understood. To understand the structure of this region and its variations from the southern Appalachians to northernmost Mexico, we have complied and integrated multiple data sets to produce a set of lithospheric scale transects crossing this region. These transects are presented as gravity models, but they are constrained by the available seismic reflection/refraction, passive seismic, magnetic, drilling, and geological data. The key transect is based on the PASSCAL wide-angle reflection/refraction experiment that extended from the Ouachita Mountains in Arkansas across the Sabine uplift in Louisiana and into the northernmost Gulf of Mexico. This experiment imaged the Iapetan rifted margin and showed that it was not strongly deformed. This model and one across Alabama delineated crustal blocks south of the rifted margin of Laurentia whose origin is unknown. In central Texas, the models show a crust that thins gradually from the Ouachita orogenic belt southward across the coastline to the edge of the continental margin in the Gulf of Mexico. In western Texas and adjacent northern Mexico, another crustal block has been proposed. Thus, our integrated models and geologic constraints show that the Appalachian and Ouachita orogenic belts were formed during assembly of Pangea (by 270 Ma), and were driven onto the Iapetan rifted margin by collisions with arcs, exotic terranes, and other continents. They also show that the sinuous curves of the Appalachian-Ouachita orogen mimic the shape of the Iapetan rifted margin and subsequent passive-margin shelf edge. Our results indicate that the Ouachita orogeny appears to be the result of soft collisions that have left the pre-orogenic rifted margins largely intact and reflect the complex interactions of compressional and strike-slip deformation.

Pteropod Ecology and Physiology in Relation to Natural Variability in Carbonate Chemistry

NASA Astrophysics Data System (ADS)

Lawson, G. L.; Maas, A. E.; Wang, A. Z.; Bergan, A. J.; Wiebe, P. H.; Blanco-Bercial, L.; Lavery, A.; Copley, N. J.

2016-02-01

The thecosomatous pteropods are a group of aragonite-shelled zooplankton thought to be particularly vulnerable to ocean acidification. We seek to gain insight into both basic questions of pteropod biology and potential responses to ocean acidification by combining field sampling with shipboard experimental manipulations, capitalizing on natural spatial variability in modern-day carbonate chemistry between and within the Atlantic and Pacific Oceans. Two cruises were conducted, in 2011 and 2012, along open-ocean transects running between 35 and 50°N in the NW Atlantic and NE Pacific; strong differences in environmental conditions exist between these regions, as well as along the Pacific transect, notably in aragonite compensation and oxygen minimum depths. The transects overlapped with portions of WOCE/CLIVAR lines A20 and P17N and measurements of carbonate chemistry provided insight into rates of chemical change as well as information on the pteropods' chemical environment. The abundance and diversity of pteropods varied substantially within and between the study regions. Depth-stratified net sampling during day and night indicated that multiple pteropod species undertook the typical diel vertical migration employed by many zooplankton species as an anti-predation strategy; the amplitude of this migration differed among species as well as within sub-populations of certain cosmopolitan species found in both oceans. Shipboard experiments of short-duration (<18 hrs, intended to mimic the duration of diel vertical migrations to depth) exposing eight species of pteropod to high CO2 and low O2 found no effect of CO2 alone on metabolic rate and an effect of low O2 or interactive effect of CO2 and O2 only in two Atlantic species not known to naturally encounter low oxygen in their biogeographic range. The implications of these various findings to our understanding of the response of pteropods to environmental change will be discussed.

Characterising and modelling regolith stratigraphy using multiple geophysical techniques

NASA Astrophysics Data System (ADS)

Thomas, M.; Cremasco, D.; Fotheringham, T.; Hatch, M. A.; Triantifillis, J.; Wilford, J.

2013-12-01

Regolith is the weathered, typically mineral-rich layer from fresh bedrock to land surface. It encompasses soil (A, E and B horizons) that has undergone pedogenesis. Below is the weathered C horizon that retains at least some of the original rocky fabric and structure. At the base of this is the lower regolith boundary of continuous hard bedrock (the R horizon). Regolith may be absent, e.g. at rocky outcrops, or may be many 10's of metres deep. Comparatively little is known about regolith, and critical questions remain regarding composition and characteristics - especially deeper where the challenge of collecting reliable data increases with depth. In Australia research is underway to characterise and map regolith using consistent methods at scales ranging from local (e.g. hillslope) to continental scales. These efforts are driven by many research needs, including Critical Zone modelling and simulation. Pilot research in South Australia using digitally-based environmental correlation techniques modelled the depth to bedrock to 9 m for an upland area of 128 000 ha. One finding was the inability to reliably model local scale depth variations over horizontal distances of 2 - 3 m and vertical distances of 1 - 2 m. The need to better characterise variations in regolith to strengthen models at these fine scales was discussed. Addressing this need, we describe high intensity, ground-based multi-sensor geophysical profiling of three hillslope transects in different regolith-landscape settings to characterise fine resolution (i.e. < 1 m) regolith stratigraphy. The geophysics included: ground penetrating radar collected at a number of frequencies; multiple frequency, multiple coil electromagnetic induction; and high resolution resistivity. These were accompanied by georeferenced, closely spaced deep cores to 9 m - or to core refusal. The intact cores were sub-sampled to standard depths and analysed for regolith properties to compile core datasets consisting of: water content; texture; electrical conductivity; and weathered state. After preprocessing (filtering, geo-registration, depth correction, etc.) each geophysical profile was evaluated by matching the core data. Applying traditional geophysical techniques, the best profiles were inverted using the core data creating two-dimensional (2-D) stratigraphic regolith models for each transect, and evaluated using independent validation. Next, in a test of an alternative method borrowed from digital soil mapping, the best preprocessed geophysical profiles were co-registered and stratigraphic models for each property created using multivariate environmental correlation. After independent validation, the qualities of the latest models were compared to the traditionally derived 2-D inverted models. Finally, the best overall stratigraphic models were used in conjunction with local environmental data (e.g. geology, geochemistry, terrain, soils) to create conceptual regolith hillslope models for each transect highlighting important features and processes, e.g. morphology, hydropedology and weathering characteristics. Results are presented with recommendations regarding the use of geophysics in modelling regolith stratigraphy at fine scales.

A new technique for hepatic parenchymal transection using an articulating bipolar 5 cm radiofrequency device: results from the first 100 procedures.

PubMed

Takahashi, Hideo; Akyuz, Muhammet; Aksoy, Erol; Aucejo, Federico; Quintini, Cristiano; Miller, Charles; Fung, John; Berber, Eren

2018-04-13

Parenchymal transection(PT) still remains a challenge in liver resection. The outcomes of the first experience of a novel vessel-sealer for hepatic transection were assessed. A bipolar articulating vessel-sealer (Caiman ® , Aesculap Inc., Center Valley, PA) was used in 100 liver resections through both open (OLR) and laparoscopic (LLR) approaches. All data were prospectively collected into an IRB-approved department database, and clinical, surgical and perioperative parameters were analyzed. Fifty patients underwent OLR and 50 patients underwent LLR. Eighty hepatectomies were performed for malignancy. Median number of tumors was 1, with the largest focus measuring an average of 5.1 cm. Forty-nine of the procedures were major liver resections. Parenchymal transection time was 29.9 ± 3.1 min in OLR and 29.9 ± 3.6 min in LLR. Median estimated blood loss was 300 cc (Inter-quartile range (IQR) 100-575 cc). Median hospital stay was 6 days for open and 3 days for laparoscopic procedures. Ninety-day complication rate was 8% without any mortality. Bile leak rate was 4%. Staplers were used for parenchymal transection in 16 cases. This study introduces a new multifunctional device into the armamentarium of the liver surgeon. In our experience, this device facilitated the parenchymal transection by adding speed and consolidating the amount of instrumentation used in liver resection without increasing complications. Copyright © 2018 International Hepato-Pancreato-Biliary Association Inc. Published by Elsevier Ltd. All rights reserved.

A geostatistical approach for quantification of contaminant mass discharge uncertainty using multilevel sampler measurements

NASA Astrophysics Data System (ADS)

Li, K. Betty; Goovaerts, Pierre; Abriola, Linda M.

2007-06-01

Contaminant mass discharge across a control plane downstream of a dense nonaqueous phase liquid (DNAPL) source zone has great potential to serve as a metric for the assessment of the effectiveness of source zone treatment technologies and for the development of risk-based source-plume remediation strategies. However, too often the uncertainty of mass discharge estimated in the field is not accounted for in the analysis. In this paper, a geostatistical approach is proposed to estimate mass discharge and to quantify its associated uncertainty using multilevel transect measurements of contaminant concentration (C) and hydraulic conductivity (K). The approach adapts the p-field simulation algorithm to propagate and upscale the uncertainty of mass discharge from the local uncertainty models of C and K. Application of this methodology to numerically simulated transects shows that, with a regular sampling pattern, geostatistics can provide an accurate model of uncertainty for the transects that are associated with low levels of source mass removal (i.e., transects that have a large percentage of contaminated area). For high levels of mass removal (i.e., transects with a few hot spots and large areas of near-zero concentration), a total sampling area equivalent to 6˜7% of the transect is required to achieve accurate uncertainty modeling. A comparison of the results for different measurement supports indicates that samples taken with longer screen lengths may lead to less accurate models of mass discharge uncertainty. The quantification of mass discharge uncertainty, in the form of a probability distribution, will facilitate risk assessment associated with various remediation strategies.

Spontaneous recovery of locomotion induced by remaining fibers after spinal cord transection in adult rats.

PubMed

You, Si-Wei; Chen, Bing-Yao; Liu, Hui-Ling; Lang, Bing; Xia, Jie-Lai; Jiao, Xi-Ying; Ju, Gong

2003-01-01

A major issue in analysis of experimental results after spinal cord injury is spontaneous functional recovery induced by remaining nerve fibers. The authors investigated the relationship between the degree of locomotor recovery and the percentage and location of the fibers that spared spinal cord transection. The spinal cords of 12 adult rats were transected at T9 with a razor blade, which often resulted in sparing of nerve fibers in the ventral spinal cord. The incompletely-transected animals were used to study the degree of spontaneous recovery of hindlimb locomotion, evaluated with the BBB rating scale, in correlation to the extent and location of the remaining fibers. Incomplete transection was found in the ventral spinal cord in 42% of the animals. The degree of locomotor recovery was highly correlated with the percentage of the remaining fibers in the ventral and ventrolateral funiculi. In one of the rats, 4.82% of remaining fibers in unilateral ventrolateral funiculus were able to sustain a certain recovery of locomotion. Less than 5% of remaining ventrolateral white matter is sufficient for an unequivocal motor recovery after incomplete spinal cord injury. Therefore, for studies with spinal cord transection, the completeness of sectioning should be carefully checked before any conclusion can be reached. The fact that the degree of locomotor recovery is correlated with the percentage of remaining fibers in the ventrolateral spinal cord, exclusive of most of the descending motor tracts, may imply an essential role of propriospinal connections in the initiation of spontaneous locomotor recovery.

Effects of the dimeric PSD-95 inhibitor UCCB01-144 on functional recovery after fimbria-fornix transection in rats.

PubMed

Sommer, Jens Bak; Bach, Anders; Malá, Hana; Strømgaard, Kristian; Mogensen, Jesper; Pickering, Darryl S

2017-10-01

Pharmacological inhibition of PSD-95 is a promising therapeutic strategy in the treatment of stroke, and positive effects of monomeric and dimeric PSD-95 inhibitors have been reported in numerous studies. However, whether therapeutic effects will generalize to other types of acute brain injury such as traumatic brain injury (TBI), which has pathophysiological mechanisms in common with stroke, is currently uncertain. We have previously found a lack of neuroprotective effects of dimeric PSD-95 inhibitors in the controlled cortical impact model of TBI in rats. However, as no single animal model is currently able to mimic the complex and heterogeneous pathophysiology of TBI, it is necessary to assess treatment effects across a range of models. In this preliminary study we investigated the neuroprotective abilities of the dimeric PSD-95 inhibitor UCCB01-144 after fimbria-fornix (FF) transection in rats. UCCB01-144 or saline was injected into the lateral tail vein of rats immediately after sham surgery or FF-transection, and effects on spatial delayed alternation in a T-maze were assessed over a 28-day period. Task acquisition was significantly impaired in FF-transected animals, but there were no significant effects of UCCB01-144 on spatial delayed alternation after FF-transection or sham surgery, although decelerated learning curves were seen after treatment with UCCB01-144 in FF-transected animals. The results of the present study are consistent with previous research showing a lack of neuroprotective effects of PSD-95 inhibition in experimental models of TBI. Copyright © 2017 Elsevier Inc. All rights reserved.

Fungiform taste bud degeneration in C57BL/6J mice following chorda-lingual nerve transection.

PubMed

Guagliardo, Nick A; Hill, David L

2007-09-10

Taste buds are dependent on innervation for normal morphology and function. Fungiform taste bud degeneration after chorda tympani nerve injury has been well documented in rats, hamsters, and gerbils. The current study examines fungiform taste bud distribution and structure in adult C57BL/6J mice from both intact taste systems and after unilateral chorda-lingual nerve transection. Fungiform taste buds were visualized and measured with the aid of cytokeratin 8. In control mice, taste buds were smaller and more abundant on the anterior tip (<1 mm) of the tongue. By 5 days after nerve transection taste buds were smaller and fewer on the side of the tongue ipsilateral to the transection and continued to decrease in both size and number until 15 days posttransection. Degenerating fungiform taste buds were smaller due to a loss of taste bud cells rather than changes in taste bud morphology. While almost all taste buds disappeared in more posterior fungiform papillae by 15 days posttransection, the anterior tip of the tongue retained nearly half of its taste buds compared to intact mice. Surviving taste buds could not be explained by an apparent innervation from the remaining intact nerves. Contralateral effects of nerve transection were also observed; taste buds were larger due to an increase in the number of taste bud cells. These data are the first to characterize adult mouse fungiform taste buds and subsequent degeneration after unilateral nerve transection. They provide the basis for more mechanistic studies in which genetically engineered mice can be used. (c) 2007 Wiley-Liss, Inc.

Passive immunization of fetal rats with antiserum to luteinizing hormone-releasing hormone (LHRH) or transection of the central roots of the nervus terminalis does not affect rat pups' preference for home nest.

PubMed

Schwanzel-Fukuda, M; Pfaff, D W

1987-01-01

Luteinizing hormone-releasing hormone (LHRH) is found immunocytochemically in cell bodies and fibers of the nervus terminalis, a cranial nerve which courses from the nasal septum through the cribriform plate of the ethmoid bone (medial to the olfactory and vomeronasal nerves) and enters the forebrain, caudal to the olfactory bulbs. Immunoreactive LHRH is first detected in the nervus terminalis of the fetal rat at 15 days of gestation, preceding its detection by immunocytochemistry in any other area of the brain, including the median eminence, and preceding detection of immunoreactive luteinizing hormone (LH) in the anterior pituitary. During development of the rat fetus, the nervus terminalis is the principal source of LHRH in the nervous system from days 15 through 19 of a 21 day gestation period. We tested the notion that the LHRH system of the nervus terminalis is important for olfactory performance by examining the effects of administration of antisera to LHRH during fetal development (versus saline controls), or medial olfactory peduncle transections, in the neonatal rat, which would sever the central projections of the nervus terminalis (versus lateral peduncle transection, complete transection of the olfactory peduncles and the central nervus terminalis or controls) on preferences of rat pups for home nest. The hypothesis that LHRH is important for this chemosensory response was not confirmed. Neither antisera to LHRH nor medical olfactory peduncle transection disrupted preference for home shavings. Only complete olfactory peduncle transection had a significant effect compared to unoperated and sham-operated controls.

Effect of partial and complete posterior cruciate ligament transection on medial meniscus: A biomechanical evaluation in a cadaveric model.

PubMed

Gao, Shu-Guang; Zhang, Can; Zhao, Rui-Bo; Liao, Zhan; Li, Yu-Sheng; Yu, Fang; Zeng, Chao; Luo, Wei; Li, Kang-Hua; Lei, Guang-Hua

2013-09-01

The relationship between medial meniscus tear and posterior cruciate ligament (PCL) injury has not been exactly explained. We studied to investigate the biomechanical effect of partial and complete PCL transection on different parts of medial meniscus at different flexion angles under static loading conditions. TWELVE FRESH HUMAN CADAVERIC KNEE SPECIMENS WERE DIVIDED INTO FOUR GROUPS: PCL intact (PCL-I), anterolateral bundle transection (ALB-T), posteromedial bundle transection (PMB-T) and PCL complete transection (PCL-T) group. Strain on the anterior horn, body part and posterior horn of medial meniscus were measured under different axial compressive tibial loads (200-800 N) at 0°, 30°, 60° and 90° knee flexion in each groups respectively. Compared with the PCL-I group, the PCL-T group had a higher strain on whole medial meniscus at 30°, 60° and 90° flexion in all loading conditions and at 0° flexion with 400, 600 and 800 N loads. In ALB-T group, strain on whole meniscus increased at 30°, 60° and 90° flexion under all loading conditions and at 0° flexion with 800 N only. PMB-T exihibited higher strain at 0° flexion with 400 N, 600 N and 800 N, while at 30° and 60° flexion with 800 N and at 90° flexion under all loading conditions. Partial PCL transection triggers strain concentration on medial meniscus and the effect is more pronounced with higher loading conditions at higher flexion angles.

Influence of the proximity and amount of human development and roads on the occurrence of the red imported fire ant in the lower Florida Keys

USGS Publications Warehouse

Forys, E.A.; Allen, Craig R.; Wojcik, D.P.

2002-01-01

We examined the influence of both the proximity and extent of human developments and paved roads on the presence of the predatory, non-indigenous, red imported fire ant (Solenopsis invicta). This species was inadvertently introduced into the United States at the port of Mobile, Alabama, around 1930 and rapidly spread to many southeastern states, including Florida. More recently, S. invicta colonized the Florida Keys, an area with a high proportion of rare and endemic vertebrate and invertebrate species. We placed bait transects in transitional salt-marsh, pineland, and hardwood hammocks on 13 of the lower Florida Keys and compared habitat type, the shortest distance of the bait transect to a development or road, and area of development and roads 50, 70, 100, and 150 m around each bait transect for areas with and without red imported fire ants. Red imported fire ants were detected on 21 of the 80 transects and were equally abundant in all habitat types. While all of the development and road variables differed significantly between bait transects with and without red imported fire ants, transects that were closest to roads and that had the largest amount of development within a 150 m radii had the highest probability of presence of red imported fire ants. Recovery efforts for endangered species in areas invaded by red imported fire ants should include analyses of the cumulative impacts of roads and developments in areas near protected lands. ?? 2002 Elsevier Science Ltd. All rights reserved.

Differential Adaptations of the Musculoskeletal System after Spinal Cord Contusion and Transection in Rats.

PubMed

Lin, Ching-Yi; Androjna, Charlie; Rozic, Richard; Nguyen, Bichtram; Parsons, Brett; Midura, Ronald J; Lee, Yu-Shang

2018-04-05

Spinal cord injury (SCI) causes impaired neuronal function with associated deficits in the musculoskeletal system, which can lead to permanent disability. Here, the impact of SCI on in vivo musculoskeletal adaptation was determined by studying deficits in locomotor function and analyzing changes that occur in the muscle and bone compartments within the rat hindlimb after contusion or transection SCI. Analyses of locomotor patterns, as assessed via the Basso, Beattie, and Bresnahan (BBB) rating scale, revealed that transection animals showed significant deficits, while the contusion group had moderate deficits, compared with naïve groups. Muscle myofiber cross-sectional areas (CSA) of both the soleus and tibialis anterior muscles were significantly decreased three months after contusion SCI. Such decreases in CSA were even more dramatic in the transection SCI group, suggesting a dependence on muscle activity, which is further validated by the correlation analyses between BBB score and myofiber CSA. Bone compartment analyses, however, revealed that transection animals showed the most significant deficits, while contusion animals showed no significant differences in the trabecular bone content within the proximal tibia compartment. In general, values of bone volume per total bone volume (BV/TV) were similar across the SCI groups. Significant decreases were observed, however, in the transection animals for bone mineral content, bone mineral density, and three-dimensional trabecular structure parameters (trabecular number, thickness, and spacing) compared with the naïve and contusion groups. Together, these findings suggest an altered musculoskeletal system can be correlated directly to motor dysfunctions seen after SCI.

Coupled Land Surface-Subsurface Hydrogeophysical Inverse Modeling to Estimate Soil Organic Carbon Content in an Arctic Tundra

NASA Astrophysics Data System (ADS)

Tran, A. P.; Dafflon, B.; Hubbard, S.

2017-12-01

Soil organic carbon (SOC) is crucial for predicting carbon climate feedbacks in the vulnerable organic-rich Arctic region. However, it is challenging to achieve this property due to the general limitations of conventional core sampling and analysis methods. In this study, we develop an inversion scheme that uses single or multiple datasets, including soil liquid water content, temperature and ERT data, to estimate the vertical profile of SOC content. Our approach relies on the fact that SOC content strongly influences soil hydrological-thermal parameters, and therefore, indirectly controls the spatiotemporal dynamics of soil liquid water content, temperature and their correlated electrical resistivity. The scheme includes several advantages. First, this is the first time SOC content is estimated by using a coupled hydrogeophysical inversion. Second, by using the Community Land Model, we can account for the land surface dynamics (evapotranspiration, snow accumulation and melting) and ice/liquid phase transition. Third, we combine a deterministic and an adaptive Markov chain Monte Carlo optimization algorithm to better estimate the posterior distributions of desired model parameters. Finally, the simulated subsurface variables are explicitly linked to soil electrical resistivity via petrophysical and geophysical models. We validate the developed scheme using synthetic experiments. The results show that compared to inversion of single dataset, joint inversion of these datasets significantly reduces parameter uncertainty. The joint inversion approach is able to estimate SOC content within the shallow active layer with high reliability. Next, we apply the scheme to estimate OC content along an intensive ERT transect in Barrow, Alaska using multiple datasets acquired in the 2013-2015 period. The preliminary results show a good agreement between modeled and measured soil temperature, thaw layer thickness and electrical resistivity. The accuracy of estimated SOC content will be evaluated by comparison with measurements from soil samples along the transect. Our study presents a new surface-subsurface, deterministic-stochastic hydrogeophysical inversion approach, as well as the benefit of including multiple types of data to estimate SOC and associated hydrological-thermal dynamics.

Hyperspectral data analysis for estimation of foliar biochemical content along the Oregon transect

NASA Technical Reports Server (NTRS)

Johnson, Lee F.; Peterson, David L.

1991-01-01

The NASA Oregon Transect Ecosystem Research (OTTER) project completed a data acquisition phase. Data were acquired with several airborne imaging spectrometers. Included were the Airborne Visible and Infrared Imaging Spectrometer (AVIRIS) aboard the ER-2, the Advanced Solidstate Array Spectrometer (ASAS) aboard the C-130, and the Fluorescence Line Imager (FLI) and Compact Airborne Spectrographic Imager (CASI), both aboard light aircraft. In addition, Spectron visible and near-infrared data were acquired in transects across study areas from a low-altitude ultralight craft. Sunphotometer data were taken approximately coincident with each overflight for atmospheric correction of the aircraft data.

Digital radiography and historical contextualisation of the 19th century modified human skeletal remains from the Worcester Royal Infirmary, England.

PubMed

Western, A G; Bekvalac, J

2015-09-01

Recent excavations at the Worcester Royal Infirmary revealed a large assemblage of modified skeletal remains dating to the late 19th century. The assemblage included a sample of 134 long bones, 76 of which were transected and 58 of which displayed evidence of gross pathology without transection. Transection may have been undertaken for the purposes of amputation, anatomical or morbid dissection, for surgical training or specimen preparation. In order to elucidate the motives for such modification, Direct Digital Radiography (DDR) was undertaken on the proximal and distal elements present to confirm the true prevalence of disease. The radiographic evidence revealed that some transected elements exhibited previously unobserved pathological changes. The ratios of proximal to distal elements varied between samples of pathological and non-pathological transected elements, suggesting different motives for modification. There was also a significant difference between the composition of the skeletal sample and that expected from historical records of amputation. Aggressive or acute/subacute as well as chronic stages of disease were observed, some lesions possibly relating to ascending infection following gangrenous limb ischaemia or haematogenous spread. Other rare conditions were detected using DDR, proving it to be a critical tool in the assessment of skeletal disease in the past. Copyright © 2015 Elsevier Inc. All rights reserved.

The design of sampling transects for characterizing water quality in estuaries

USGS Publications Warehouse

Jassby, A.D.; Cole, B.E.; Cloern, J.E.

1997-01-01

The high spatial variability of estuaries poses a challenge for characterizing estuarine water quality. This problem was examined by conducting monthly high-resolution transects for several water quality variables (chlorophyll a, suspended particulate matter and salinity) in San Francisco Bay (California, U.S.A.). Using these data, six different ways of choosing station locations along a transect, in order to estimate mean conditions, were compared. In addition, 11 approaches to estimating the variance of the transect mean when stations are equally spaced were compared, and the relationship between variance of the estimated transect mean and number of stations was determined. The results provide guidelines for sampling along the axis of an estuary: (1) Choose as many equally-spaced stations as practical; (2) estimate the variance of the mean y?? by var (y??)=(1/10n2)??(j=2)/(n) (y(j)-y(j-1)2, where y1,...,y(n) are the measurements at the n stations; and (3) attain the desired precision by adjusting the number of stations according to var(y??)???1/n2. The inverse power of 2 in the last step is a consequence of the underlying spatial correlation structure in San Francisco Bay; more studies of spatial structure at other estuaries are needed to determine the generality of this relationship.

Persulfate injection into a gasoline source zone

NASA Astrophysics Data System (ADS)

Sra, Kanwartej S.; Thomson, Neil R.; Barker, Jim F.

2013-07-01

One pore volume of unactivated sodium persulfate was delivered into an emplaced gasoline residual source zone at CFB Borden. Concentrations of inorganic species (S2O82 -, SO42 -, Na+, dissolved inorganic carbon (DIC)) and selected gasoline compounds (benzene, toluene, ethylbenzene, xylenes, trimethylbenzenes and naphthalene) were monitored across a transect equipped with 90 multilevel sampling points for > 10 months post-injection. Mass loading (M˙) of compounds constructed from the transect data was used for assessment purposes. Breakthrough of inorganic species was observed when the injection slug crossed the monitoring transect. An increase in M indicated persulfate consumption during oxidation of gasoline compounds or degradation due to the interaction with aquifer materials. M increased by > 100% suggesting some mineralization of gasoline compounds during treatment. Mass loading for all the monitored gasoline compounds reduced by 46 to 86% as the inorganic slug crossed the monitoring transect. The cumulative mass discharge across the monitoring transect was 19 to 58% lower than that expected without persulfate injection. After the inorganic injection slug was flushed from the source zone a partial rebound (40 to 80% of baseline levels) of mass discharge of the monitored gasoline compounds was observed. The ensemble of data collected provides insight into the fate and transport of the injected persulfate solution, and the accompanying treatment of a gasoline the source zone.

Latitudinal transects in the southeastern Pacific Ocean reveal a diverse but patchy distribution of phycotoxins.

PubMed

Trefault, N; Krock, B; Delherbe, N; Cembella, A; Vásquez, M

2011-10-01

Phycotoxin distribution and abundance was determined during an oceanographic expedition along a latitudinal transect of 27° extent in the southeastern Pacific Ocean, from the fjords of Tierra del Fuego Island to offshore Copiapó in the Atacama region along the Chilean coast. Plankton samples were harvested at regular intervals during the entire cruise and later analyzed by liquid chromatography coupled with tandem mass spectrometry (LC-MS/MS) for domoic acid (DA) and lipophilic toxins. Although no evident toxic algal bloom was encountered during this transect, several phycotoxin analogues from distinct toxin groups were detected. These phycotoxins included DA, the pectenotoxins PTX-2, PTX-2sa and PTX-11, dinophystoxin-1 (DTX-1) and gymnodimine (GYM), which is the first report of this latter toxin in the southeast Pacific. A region-specific and rather disjunct distribution of GYM, DA and DTX-1 was observed, whereas PTX-2, PTX-2sa and PTX-11 were more widely distributed over almost the entire transect. This work represents the first assessment of lipophilic toxins through a wide latitudinal transect of the southeastern Pacific, revealing a patchy distribution of several phycotoxins and pointing out the specific geographical distribution of the putative toxigenic organisms. Copyright © 2011 Elsevier Ltd. All rights reserved.

Cross-Sectional Data for Selected Reaches of the Chattahoochee River within the Chattahoochee River National Recreation Area, Georgia, 2004

USGS Publications Warehouse

Dalton, Melinda S.

2006-01-01

This report presents hydrologic data for selected reaches of the Chattahoochee River within the Chattahoochee River National Recreation Area (CRNRA). Data about transect location, width, depth, and velocity of flow for selected reaches of the river are presented in tabular form. The tables contain measurements collected from shoal and run habitats identified as critical sites for the CRNRA. In shoal habitats, measurements were collected while wading using a digital flowmeter and laser range finder. In run habitats, measurements were collected using acoustic Doppler current profiling. Fifty-three transects were established in six reaches throughout the CRNRA; 24 in shoal habitat, 26 in run habitat, and 3 in pool habitat. Illustrations in this report contain information about study area location, hydrology, transect locations, and cross-sectional information. A study area location figure is followed by figures identifying locations of transects within each individual reach. Cross-sectional information is presented for each transect, by reach, in a series of graphs. The data presented herein can be used to complete preliminary habitat assessments for the Chattahoochee River within the CRNRA. These preliminary assessments can be used to identify reaches of concern for future impacts associated with continual development in the Metropolitan Atlanta area and potential water allocation agreements between Georgia, Florida, and Alabama.

Statistical and Multifractal Evaluation of Soil Compaction in a Vineyard

NASA Astrophysics Data System (ADS)

Marinho, M.; Raposo, J. R.; Mirás Avalos, J. M.; Paz González, A.

2012-04-01

One of the detrimental effects caused by agricultural machines is soil compaction, which can be defined by an increase in soil bulk density. Soil compaction often has a negative impact on plant growth, since it reduces the macroporosity and soil permeability and increases resistance to penetration. Our research explored the effect of the agricultural machinery on soil when trafficking through a vineyard at a small spatial scale, based on the evaluation of the soil compaction status. The objectives of this study were: i) to quantify soil bulk density along transects following wine row, wheel track and outside track, and, ii) to characterize the variability of the bulk density along these transects using multifractal analysis. The field work was conducted at the experimental farm of EVEGA (Viticulture and Enology Centre of Galicia) located in Ponte San Clodio, Leiro, Orense, Spain. Three parallel transects were marked on positions with contrasting machine traffic effects, i.e. vine row, wheel-track and outside-track. Undisturbed samples were collected in 16 points of each transect, spaced 0.50 m apart, for bulk density determination using the cylinder method. Samples were taken in autumn 2011, after grape harvest. Since soil between vine rows was tilled and homogenized beginning spring 2011, cumulative effects of traffic during the vine growth period could be evaluated. The distribution patterns of soil bulk density were characterized by multifractal analysis carried out by the method of moments. Multifractality was assessed by several indexes derived from the mass exponent, τq, the generalized dimension, Dq, and the singularity spectrum, f(α), curves. Mean soil bulk density values determined for vine row, outside-track and wheel-track transects were 1.212 kg dm-3, 1.259 kg dm-3and 1.582 kg dm-3, respectively. The respective coefficients of variation (CV) for these three transects were 7.76%, 4.82% and 2.03%. Therefore mean bulk density under wheel-track was 30.5% higher than along the vine row. Vine row and outside-track positions showed not significant differences between means. The bulk density of the wheel-track transect also showed the lowest CV. The multifractal spectra of the three transects were asymmetric curves, rather short toward the left and much longer toward the right. The width of the right deviating shaped multifractal spectra was ranked as: wine row > outside-track ≈ wheel-track. Entropy dimension, D1, was 0.998, 0.992 and 0.992 for vine row, outside-track and track transects, respectively. These results show different patterns of variability of bulk density for parallel transects. They also suggest that multifractal parameters may be useful in assessing the variability of other soil properties such as soil particle density, soil porosity or soil water content, at different spatial scales as well. Acknowledgments. This work was funded in part by Spanish Ministry of Science and Innovation (MICINN) in the frame of project CGL2009-13700-C02. Financial support from CAPES/GOV., Brazil, is also acknowledged by Prof. M. Marinho.

Stable isotope differences among the Lake Michigan 2015 CSMI transects

EPA Science Inventory

During the Lake Michigan 2015 Cooperative Science and Monitoring Initiative (CSMI), eight transects situated near tributaries that present a gradient of phosphorus loads were sampled from nearshore to offshore during May, July, and September. Our objective was to evaluate associa...

Developing accurate survey methods for estimating population sizes and trends of the critically endangered Nihoa Millerbird and Nihoa Finch.

USGS Publications Warehouse

Gorresen, P. Marcos; Camp, Richard J.; Brinck, Kevin W.; Farmer, Chris

2012-01-01

Point-transect surveys indicated that millerbirds were more abundant than shown by the striptransect method, and were estimated at 802 birds in 2010 (95%CI = 652 – 964) and 704 birds in 2011 (95%CI = 579 – 837). Point-transect surveys yielded population estimates with improved precision which will permit trends to be detected in shorter time periods and with greater statistical power than is available from strip-transect survey methods. Mean finch population estimates and associated uncertainty were not markedly different among the three survey methods, but the performance of models used to estimate density and population size are expected to improve as the data from additional surveys are incorporated. Using the pointtransect survey, the mean finch population size was estimated at 2,917 birds in 2010 (95%CI = 2,037 – 3,965) and 2,461 birds in 2011 (95%CI = 1,682 – 3,348). Preliminary testing of the line-transect method in 2011 showed that it would not generate sufficient detections to effectively model bird density, and consequently, relatively precise population size estimates. Both species were fairly evenly distributed across Nihoa and appear to occur in all or nearly all available habitat. The time expended and area traversed by observers was similar among survey methods; however, point-transect surveys do not require that observers walk a straight transect line, thereby allowing them to avoid culturally or biologically sensitive areas and minimize the adverse effects of recurrent travel to any particular area. In general, pointtransect surveys detect more birds than strip-survey methods, thereby improving precision and resulting population size and trend estimation. The method is also better suited for the steep and uneven terrain of Nihoa

Involvement of hypoglossal and recurrent laryngeal nerves on swallowing pressure.

PubMed

Tsujimura, Takanori; Suzuki, Taku; Yoshihara, Midori; Sakai, Shogo; Koshi, Naomi; Ashiga, Hirokazu; Shiraishi, Naru; Tsuji, Kojun; Magara, Jin; Inoue, Makoto

2018-05-01

Swallowing pressure generation is important to ensure safe transport of an ingested bolus without aspiration or leaving residue in the pharynx. To clarify the mechanism, we measured swallowing pressure at the oropharynx (OP), upper esophageal sphincter (UES), and cervical esophagus (CE) using a specially designed manometric catheter in anesthetized rats. A swallow, evoked by punctate mechanical stimulation to the larynx, was identified by recording activation of the suprahyoid and thyrohyoid muscles using electromyography (EMG). Areas under the curve of the swallowing pressure at the OP, UES, and CE from two trials indicated high intrasubject reproducibility. Effects of transecting the hypoglossal nerve (12N) and recurrent laryngeal nerve (RLN) on swallowing were investigated. Following bilateral hypoglossal nerve transection (Bi-12Nx), OP pressure was significantly decreased, and time intervals between peaks of thyrohyoid EMG bursts and OP pressure were significantly shorter. Decreased OP pressure and shortened times between peaks of thyrohyoid EMG bursts and OP pressure following Bi-12Nx were significantly increased and longer, respectively, after covering the hard and soft palates with acrylic material. UES pressure was significantly decreased after bilateral RLN transection compared with that before transection. These results suggest that the 12N and RLN play crucial roles in OP and UES pressure during swallowing, respectively. We speculate that covering the palates with a palatal augmentation prosthesis may reverse the reduced swallowing pressure in patients with 12N or tongue damage by the changes of the sensory information and of the contact between the tongue and a palates. NEW & NOTEWORTHY Hypoglossal nerve transection reduced swallowing pressure at the oropharynx. Covering the hard and soft palates with acrylic material may reverse the reduced swallowing function caused by hypoglossal nerve damage. Recurrent laryngeal nerve transection reduced upper esophageal sphincter negative pressure during swallowing.

Simulation of Anterior Cruciate Ligament Deficiency in a Musculoskeletal Model with Anatomical Knees

PubMed Central

Guess, Trent M; Stylianou, Antonis

2012-01-01

Abnormal knee kinematics and meniscus injury resulting from anterior cruciate ligament (ACL) deficiency are often implicated in joint degeneration even though changes in tibio-femoral contact location after injury are small, typically only a few millimeters. Ligament reconstruction surgery does not significantly reduce the incidence of early onset osteoarthritis. Increased knowledge of knee contact mechanics would increase our understanding of the effects of ACL injury and help guide ACL reconstruction methods. Presented here is a cadaver specific computational knee model combined with a body-level musculoskeletal model from a subject of similar height and weight as the cadaver donor. The knee model was developed in the multi-body framework and includes representation of the menisci. Experimental body-level measurements provided input to the musculoskeletal model. The location of tibio-menisco-femoral contact as well as contact pressures were compared for models with an intact ACL, partial ACL transection (posterolateral bundle transection), and full ACL transection during a muscle driven forward dynamics simulation of a dual limb squat. During the squat, small changes in femur motion relative to the tibia for both partial and full ACL transection push the lateral meniscus in the posterior direction at extension. The central-anterior region of the lateral meniscus then becomes “wedged” between the tibia and femur during knee flexion. This “wedging” effect does not occur for the intact knee. Peak contact pressure and contact locations are similar for the partial tear and complete ACL transection during the deep flexion portion of the squat, particularly on the lateral side. The tibio-femoral contact location on the tibia plateau shifts slightly to the posterior and lateral direction with ACL transection. PMID:22470411

Scar modulation in subacute and chronic CNS lesions: Effects on axonal regeneration.

PubMed

Stichel, Christine C.; Lausberg, Friederike; Hermanns, Susanne; Müller, Hans Werner

1999-01-01

After injury of the adult mammalian CNS axonal regeneration across or around the lesion scar is negligible. Previously, we have shown that the lesion-induced basal membrane (BM) within the lesion center participates in a growth barrier for axon regeneration and that its reduction by means of pharmacological or immunochemical treatment is a prerequisite and sufficient condition for regrowing axons to cross the lesion site. The present study was designed to further investigate this observation by analyzing the effect of a delayed treatment on the regeneration of both subacutely and chronically lesioned axons.Adult rats underwent unilateral transection of the postcommissural fornix. At one to five days after transection one group of animals received a local injection of 2, 2'-dipyridyl (DPY), an inhibitor of collagen triple helix formation and synthesis. Another group received a second transection within the former lesion site followed by an immediate DPY-injection at five days or 4 weeks after transection. Six weeks after the last surgery BM deposition and axonal regeneration were analysed using immunocytochemical methods.A local injection of DPY clearly reduced the lesion-induced BM deposition when applied within the first 3 days after transection. Under these conditions regrowing axons still crossed the former impermeable lesion site and regenerated within their normal pathway up to their former target, the mammillary body. However, in late subacute (5 d) and chronic stages (4 w) the double transection+injection paradigm failed to reduce BM deposition and, in consequence, also to induce axonal regeneration.These results demonstrate the potential of the collagen IV-reducing strategy to promote axonal regeneration across the lesion scar not only in acute but also in early subacute traumatic injuries.

Characterizing the phylogenetic tree community structure of a protected tropical rain forest area in Cameroon.

PubMed

Manel, Stéphanie; Couvreur, Thomas L P; Munoz, François; Couteron, Pierre; Hardy, Olivier J; Sonké, Bonaventure

2014-01-01

Tropical rain forests, the richest terrestrial ecosystems in biodiversity on Earth are highly threatened by global changes. This paper aims to infer the mechanisms governing species tree assemblages by characterizing the phylogenetic structure of a tropical rain forest in a protected area of the Congo Basin, the Dja Faunal Reserve (Cameroon). We re-analyzed a dataset of 11538 individuals belonging to 372 taxa found along nine transects spanning five habitat types. We generated a dated phylogenetic tree including all sampled taxa to partition the phylogenetic diversity of the nine transects into alpha and beta components at the level of the transects and of the habitat types. The variation in phylogenetic composition among transects did not deviate from a random pattern at the scale of the Dja Faunal Reserve, probably due to a common history and weak environmental variation across the park. This lack of phylogenetic structure combined with an isolation-by-distance pattern of taxonomic diversity suggests that neutral dispersal limitation is a major driver of community assembly in the Dja. To assess any lack of sensitivity to the variation in habitat types, we restricted the analyses of transects to the terra firme primary forest and found results consistent with those of the whole dataset at the level of the transects. Additionally to previous analyses, we detected a weak but significant phylogenetic turnover among habitat types, suggesting that species sort in varying environments, even though it is not predominating on the overall phylogenetic structure. Finer analyses of clades indicated a signal of clustering for species from the Annonaceae family, while species from the Apocynaceae family indicated overdispersion. These results can contribute to the conservation of the park by improving our understanding of the processes dictating community assembly in these hyperdiverse but threatened regions of the world.

Transection Speed and Impact on Perioperative Inflammatory Response - A Randomized Controlled Trial Comparing Stapler Hepatectomy and CUSA Resection.

PubMed

Schwarz, Christoph; Klaus, Daniel A; Tudor, Bianca; Fleischmann, Edith; Wekerle, Thomas; Roth, Georg; Bodingbauer, Martin; Kaczirek, Klaus

2015-01-01

Parenchymal transection represents a crucial step during liver surgery and many different techniques have been described so far. Stapler resection is supposed to be faster than CUSA resection. However, whether speed impacts on the inflammatory response in patients undergoing liver resection (LR) remains unclear. This is a randomized controlled trial including 40 patients undergoing anatomical LR. Primary endpoint was transection speed (cm2/min). Secondary endpoints included the perioperative change of pro- and anti-inflammatory cytokines, overall surgery duration, length of hospital stay, morbidity and mortality. Mean transection speed was significantly higher in patients undergoing stapler hepatectomy compared to CUSA resection (CUSA: 1 (0.4) cm2/min vs. Stapler: 10.8 (6.1) cm2/min; p<0.0001). Analyzing the impact of surgery duration on inflammatory response revealed a significant correlation between IL-6 levels measured at the end of surgery and the overall length of surgery (p<0.0001, r = 0.6188). Patients undergoing CUSA LR had significantly higher increase of interleukin-6 (IL-6) after parenchymal transection compared to patients with stapler hepatectomy in the portal and hepatic veins, respectively (p = 0.028; p = 0.044). C-reactive protein levels on the first post-operative day were significantly lower in the stapler cohort (p = 0.010). There was a trend towards a reduced overall surgery time in patients with stapler LR, especially in the subgroup of patients undergoing minor hepatectomies (p = 0.020). Liver resection using staplers is fast, safe and suggests a diminished inflammatory response probably due to a decreased parenchymal transection time. ClinicalTrials.gov NCT01785212.

Transection Speed and Impact on Perioperative Inflammatory Response – A Randomized Controlled Trial Comparing Stapler Hepatectomy and CUSA Resection

PubMed Central

Schwarz, Christoph; Klaus, Daniel A.; Tudor, Bianca; Fleischmann, Edith; Wekerle, Thomas; Roth, Georg; Bodingbauer, Martin; Kaczirek, Klaus

2015-01-01

Background Parenchymal transection represents a crucial step during liver surgery and many different techniques have been described so far. Stapler resection is supposed to be faster than CUSA resection. However, whether speed impacts on the inflammatory response in patients undergoing liver resection (LR) remains unclear. Materials and Methods This is a randomized controlled trial including 40 patients undergoing anatomical LR. Primary endpoint was transection speed (cm2/min). Secondary endpoints included the perioperative change of pro- and anti-inflammatory cytokines, overall surgery duration, length of hospital stay, morbidity and mortality. Results Mean transection speed was significantly higher in patients undergoing stapler hepatectomy compared to CUSA resection (CUSA: 1 (0.4) cm2/min vs. Stapler: 10.8 (6.1) cm2/min; p<0.0001). Analyzing the impact of surgery duration on inflammatory response revealed a significant correlation between IL-6 levels measured at the end of surgery and the overall length of surgery (p<0.0001, r = 0.6188). Patients undergoing CUSA LR had significantly higher increase of interleukin-6 (IL-6) after parenchymal transection compared to patients with stapler hepatectomy in the portal and hepatic veins, respectively (p = 0.028; p = 0.044). C-reactive protein levels on the first post-operative day were significantly lower in the stapler cohort (p = 0.010). There was a trend towards a reduced overall surgery time in patients with stapler LR, especially in the subgroup of patients undergoing minor hepatectomies (p = 0.020). Conclusions Liver resection using staplers is fast, safe and suggests a diminished inflammatory response probably due to a decreased parenchymal transection time. Trial Registration ClinicalTrials.gov NCT01785212 PMID:26452162

Improving Aquatic Warbler Population Assessments by Accounting for Imperfect Detection

PubMed Central

Oppel, Steffen; Marczakiewicz, Piotr; Lachmann, Lars; Grzywaczewski, Grzegorz

2014-01-01

Monitoring programs designed to assess changes in population size over time need to account for imperfect detection and provide estimates of precision around annual abundance estimates. Especially for species dependent on conservation management, robust monitoring is essential to evaluate the effectiveness of management. Many bird species of temperate grasslands depend on specific conservation management to maintain suitable breeding habitat. One such species is the Aquatic Warbler (Acrocephalus paludicola), which breeds in open fen mires in Central Europe. Aquatic Warbler populations have so far been assessed using a complete survey that aims to enumerate all singing males over a large area. Because this approach provides no estimate of precision and does not account for observation error, detecting moderate population changes is challenging. From 2011 to 2013 we trialled a new line transect sampling monitoring design in the Biebrza valley, Poland, to estimate abundance of singing male Aquatic Warblers. We surveyed Aquatic Warblers repeatedly along 50 randomly placed 1-km transects, and used binomial mixture models to estimate abundances per transect. The repeated line transect sampling required 150 observer days, and thus less effort than the traditional ‘full count’ approach (175 observer days). Aquatic Warbler abundance was highest at intermediate water levels, and detection probability varied between years and was influenced by vegetation height. A power analysis indicated that our line transect sampling design had a power of 68% to detect a 20% population change over 10 years, whereas raw count data had a 9% power to detect the same trend. Thus, by accounting for imperfect detection we increased the power to detect population changes. We recommend to adopt the repeated line transect sampling approach for monitoring Aquatic Warblers in Poland and in other important breeding areas to monitor changes in population size and the effects of habitat management. PMID:24713994

Precision Topography of Pluvial Features in Nevada as Analogs for Possible Pluvial Landforms on Mars

NASA Astrophysics Data System (ADS)

Zimbelman, J. R.; Garry, W. B.; Irwin, R. P.

2009-12-01

Topographic measurements with better than 2 cm horizontal and 4 cm vertical precision were obtained for pluvial features in Nevada using a Trimble R8 Differential Global Positioning System (DGPS), making use of both real-time kinematic and post-processed kinematic techniques. We collected ten transects across shorelines in the southern end of Surprise Valley, near the California border in NW Nevada, on April 15-17, 2008, plus five transects of shorelines and eight transects of a wavecut scarp in Long Valley, near the Utah border in NE Nevada, on May 5-7, 2009. Each transect consists of topographic points keyed to field notes and photographs. In Surprise Valley, the highstand shoreline was noted at 1533.4 m elevation in 8 of the 10 transects, and several prominent intermediate shorelines could be correlated between two or more transects. In Long Valley, the well preserved highstand shoreline elevation of 1908.7 m correlated (within 0.6 m) to the base of the wavecut scarp along a horizontal distance of 1.2 km. These results demonstrate that adherence to a geopotential elevation level is one of the strongest indicators that a possible shoreline feature is the result of pluvial processes, and that elevation levels of features can be clearly detected and documented with precise topographic measurements. The High Resolution Imaging Science Experiment (HiRISE) is returning images of Mars that show potential shoreline features in remarkable detail (e.g., image PSP_009998_2165, 32 cm/pixel, showing a possible shoreline in NW Arabia). Our results from studying shorelines in Nevada will provide a basis for evaluating the plausibility of possible shoreline features on Mars, the implications of which are significant for the overall history of Mars.

Water-quality data for the Ohio River from New Cumberland Dam to Pike Island Dam, West Virginia and Ohio, June-November 1992

USGS Publications Warehouse

Miller, Kimberly F.; Faulkenburg, C.W.; Chambers, D.B.; Waldron, M.C.

1995-01-01

This report contains water-quality data for the Ohio River, collected during the summer and fall of 1992, from river mile 51.1 (3.3 miles upstream from New Cumberland Dam) to river mile 84.0 (0.2 miles upstream from Pike Island Dam). The data were collected to assess the effects of hydropower development on water quality. Water quality was determined by a combination of repeated synoptic field measurements and laboratory analyses. Synoptic measurements were made along a longitudinal transect with 18 mid-channel sampling sites; cross-sectional transects of water quality were measured at 5 of these sites. Water-quality measurements also were made at two sites located on the back-channel (Ohio) side of Browns Island. Water temperature, dissolved oxygen concentration, pH, and specific conductance were measured at each longitudinal-transect and back-channel sampling site. Longitudinal-transect and back-channel stations were sampled at three depths (about 3.3 feet below the surface of the water, middle of the water column, and near the bottom of the river). Cross-sectional transects consisted of three or four detailed vertical pro- files of the same characteristics. Water samples were collected from three depths at the mid-channel vertical profile in each cross-sectional transect and were analyzed for concentrations of phyto- plankton photosynthetic pigments chlorophyll a and chlorophyll b. Estimates of the depth of light penetration (Secchi disk transparency) were made at pigment-sampling locations whenever light and river-surface conditions were appropriate. Synoptic sampling usually was completed in 12 hours or less and was repeated seven times between June 25 and November 6, 1992.

Sr-Nd-Hf isotopic fingerprinting of transatlantic dust derived from North Africa

NASA Astrophysics Data System (ADS)

Zhao, Wancang; Balsam, William; Williams, Earle; Long, Xiaoyong; Ji, Junfeng

2018-03-01

Long-range transport of African dust plays an important role in understanding dust-climate relationships including dust source areas, dust pathways and associated atmospheric and/or oceanic processes. Clay-sized Sr-Nd-Hf isotopic compositions can be used as geochemical fingerprints to constrain dust provenance and the pathways of long-range transported mineral dust. We investigated the clay-sized Sr-Nd-Hf isotopic composition of surface samples along four transects bordering the Sahara Desert. The transects are from Mali, Niger/Benin/Togo, Egypt and Morocco. Our results show that the Mali transect on the West African Craton (WAC) produces lower εNd (εNd-mean = -16.38) and εHf (εHf-mean = -9.59) values than the other three transects. The Egyptian transect exhibits the lowest 87Sr/86Sr ratios (87Sr/86Srmean = 0.709842), the highest εHf (εHf-mean = -0.34) and εNd values of the four transects. Comparison of the clay-sized Sr-Nd-Hf isotopic values from our North African samples to transatlantic African dust collected in Barbados demonstrates that the dust's provenance is primarily the western Sahel and Sahara as well as the central Sahel. Summer emission dust is derived mainly from the western Sahel and Sahara regions. The source of transatlantic dust in spring and autumn is more varied than in the summer and includes dust not only from western areas, but also south central areas. Comparison of the Sr-Nd-Hf isotopic fingerprints between the source and sink of transatlantic dust also suggests that a northwestward shift in dust source occurs from the winter, through the spring and into the summer. The isotopic data we develop here provide another tool for discriminating changes in dust archives resulting from paleoenvironmental evolution of source regions.

Horizontal traumatic laceration of the pancreas head: A rare case report.

PubMed

Nanashima, Atsushi; Imamura, Naoya; Tsuchimochi, Yuki; Hamada, Takeomi; Yano, Kouichi; Hiyoshi, Masahide; Fujii, Yoshiro; Kawano, Fumiaki; MitsuruTamura

2017-01-01

This case report is intended to inform acute care surgeons about treating rare horizontal laceration of the pancreas head caused by blunt trauma. A 57-year-old woman who sustained blunt abdominal trauma during a car crash was transported to the emergency center of our hospital with unstable vital signs due to hemorrhagic shock. Computed tomography showed transection of the pancreas head and massive intra-abdominal hemorrhage. She was referred for emergency surgery because of a transient response. Laparotomy at five hours after the accident initially revealed consistent massive bleeding from branches of the superior mesenteric artery and vein, which we resolved by suturing the vessels without damaging the main trunks. A horizontal laceration and complete transection of the pancreatic head were then confirmed but the main pancreatic duct remained intact. The lower part of the pancreatic head including the uncus with the attached part of the duodenum was resected, and the pancreatic stump remaining after transection was fixed by suturing. The jejunal limb was attached to the remnant duodenum by side-to-side functional anastomosis. Although gastric emptying was delayed for one month after surgery, the postoperative course was good and the patient recovered at three months thereafter. The embryonic border of pancreas head accompanied with pancreatic divisum was considered for this laceration without disruption of the main pancreatic duct. Blunt pancreatic trauma usually causes vertical transection and thus, horizontal transection is considered rare. The embryological anatomical border between the ventral and dorsal pancreas due to pancreatic divisum was supposed to be transected and therefore the main pancreatic duct was not damaged. Hemorrhagic shock and rare pancreatic head trauma were treated by appropriate intraoperative management. Copyright © 2017 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Hyperexcitability of bladder afferent neurons associated with reduction of Kv1.4 α-subunit in rats with spinal cord injury.

PubMed

Takahashi, Ryosuke; Yoshizawa, Tsuyoshi; Yunoki, Takakazu; Tyagi, Pradeep; Naito, Seiji; de Groat, William C; Yoshimura, Naoki

2013-12-01

To clarify the functional and molecular mechanisms inducing hyperexcitability of C-fiber bladder afferent pathways after spinal cord injury we examined changes in the electrophysiological properties of bladder afferent neurons, focusing especially on voltage-gated K channels. Freshly dissociated L6-S1 dorsal root ganglion neurons were prepared from female spinal intact and spinal transected (T9-T10 transection) Sprague Dawley® rats. Whole cell patch clamp recordings were performed on individual bladder afferent neurons. Kv1.2 and Kv1.4 α-subunit expression levels were also evaluated by immunohistochemical and real-time polymerase chain reaction methods. Capsaicin sensitive bladder afferent neurons from spinal transected rats showed increased cell excitability, as evidenced by lower spike activation thresholds and a tonic firing pattern. The peak density of transient A-type K+ currents in capsaicin sensitive bladder afferent neurons from spinal transected rats was significantly less than that from spinal intact rats. Also, the KA current inactivation curve was displaced to more hyperpolarized levels after spinal transection. The protein and mRNA expression of Kv1.4 α-subunits, which can form transient A-type K+ channels, was decreased in bladder afferent neurons after spinal transection. Results indicate that the excitability of capsaicin sensitive C-fiber bladder afferent neurons is increased in association with reductions in transient A-type K+ current density and Kv1.4 α-subunit expression in injured rats. Thus, the Kv1.4 α-subunit could be a molecular target for treating overactive bladder due to neurogenic detrusor overactivity. Copyright © 2013 American Urological Association Education and Research, Inc. Published by Elsevier Inc. All rights reserved.

Transport of fecal-derived microorganisms from latrine ponds to aquifers in Bangladesh

NASA Astrophysics Data System (ADS)

Knappett, P. S.; McKay, L. D.; Layton, A.; Alam, M.; Williams, D.; Huq, M. R.; Mailloux, B. J.; Ferguson, A.; Feighery, J. E.; Culligan, P. J.; Escamilla, V.; Emch, M.; Akita, Y.; Serre, M. L.; Perfect, E.; Gentry, R. W.; Ahmed, K. M.; van Geen, A.

2009-12-01

Groundwater has been the principal source of drinking water for over 100 million people in rural Bangladesh for the past twenty years. The shallow depths and simple construction of the private wells has raised concern that these wells may be receiving fecal contamination from the densely populated rural areas with poor sanitation, contributing to high rates of diarrheal disease. Ponds are ubiquitous in Bangladesh, serving multiple purposes, including receiving fecal effluent from latrines, and private wells are frequently located in close proximity to these potential groundwater contamination sources. After detecting E. coli in up to 70% of private and monitoring wells throughout a village in Araihazar, the numerous ponds throughout the village were hypothesized to be sources of this contamination. To test this hypothesis 9 lateral transects of 4 monitoring wells each, 7 m deep and placed 1 m apart, were installed radiating away from four ponds of contrasting ages and near surface geology. These transects were monitored throughout the year to look for evidence that the ponds were contributing E. coli to the groundwater system. During the dry season from September 2008 to May 2009 no E. coli was observed in the shallow monitoring wells. In contrast, when the rains began in June 2009 several of the transects showed increasing water levels and E. coli with proximity to the pond, providing evidence that some ponds were acting as a contamination point source. A major rainfall event was simulated in June 2009 in each of the four ponds, raising the water level by 20 to 30 cm while adjacent transects were monitored. In two recently dug, deep ponds E. coli travelled up to 6 m into the medium sand aquifer within 24 hours as a result of the simulated rainfall event. In the two older ponds, which had well developed silt layers on the bottom or were emplaced in silty aquifers little E. coli was detected in the adjacent monitoring wells under natural or forced gradient conditions. For the two ponds with sandy bottoms, the pulse of E. coli was attenuated exponentially with distance, but elevated levels of E. coli remained in the aquifer for more than 10 days after the initial flooding of the ponds. Thus, during the wet season, proximity to young, deep ponds cut into sandy aquifers is a risk factor for diarrheal disease in the adjacent households. The ponds alone, however, cannot explain the spatial and temporal distribution of E. coli throughout the village aquifer, and additional sources require investigation.

Sedimentary deposits of the 26 December 2004 tsunami on the northwest coast of Aceh, Indonesia

USGS Publications Warehouse

Moore, A.; Nishimura, Y.; Gelfenbaum, G.; Kamataki, T.; Triyono, R.

2006-01-01

The 2004 Sumatra-Andaman tsunami flooded coastal northern Sumatra to a depth of over 20 m, deposited a discontinuous sheet of sand up to 80 cm thick, and left mud up to 5 km inland. In most places the sand sheet is normally graded, and in some it contains complex internal stratigraphy. Structures within the sand sheet may record the passage of up to 3 individual waves. We studied the 2004 tsunami deposits in detail along a flow-parallel transect about 400 m long, 16 km southwest of Banda Aceh. Near the shore along this transect, the deposit is thin or absent. Between 50 and 400 m inland it ranges in thickness from 5 to 20 cm. The main trend in thickness is a tendency to thicken by filling low spots, most dramatically at pre-existing stream channels. Deposition generally attended inundation - along the transect, the tsunami deposited sand to within about 40 m of the inundation limit. Although the tsunami deposit contains primarily material indistinguishable from material found on the beach one month after the event, it also contains grain sizes and compositions unavailable on the current beach. Along the transect we studied, these grains become increasingly dominant both landward and upward in the deposit; possibly some landward source of sediment was exposed and exploited by the passage of the waves. The deposit also contains the unabraded shells of subtidal marine organisms, suggesting that at least part of the deposit came from offshore. Grain sizes within the deposit tend to fine upward and landward, although individual units within the deposit appear massive, or show reverse grading. Sorting becomes better landward, although the most landward sites generally become poorly sorted from the inclusion of soil clasts. These sites commonly show interlayering of sandy units and soil clast units. Deposits from the 2004 tsunami in Sumatra demonstrate the complex nature of the deposits of large tsunamis. Unlike the deposits of smaller tsunamis, internal stratigraphy is complex, and will require some effort to understand. The Sumatra deposits also show the contribution of multiple sediment sources, each of which has its own composition and grain size. Such complexity may allow more accurate modeling of flow depth and flow velocity for paleotsunamis, if an understanding of how tsunami hydraulics affect sedimentation can be established. Copyright ?? The Society of Geomagnetism and Earth, Planetary and Space Sciences (SGEPSS); The Seismological Society of Japan; The Volcanological Society of Japan; The Geodetic Society of Japan; The Japanese Society for Planetary Sciences; TERRAPUB.

Adaptability to Changes in Temporal Structure Is Fornix-Dependent

ERIC Educational Resources Information Center

Kwok, Sze Chai; Mitchell, Anna S.; Buckley, Mark J.

2015-01-01

Recognition memory deficits, even after short delays, are sometimes observed following hippocampal damage. One hypothesis links the hippocampus with processes in updating contextual memory representation. Here, we used fornix transection, which partially disconnects the hippocampal system, and compares the performance of fornix-transected monkeys…

Adaptability to Changes Intemporal Structure Is Fornix-Dependent

ERIC Educational Resources Information Center

Kwok, Sze Chai; Mitchell, Anna S.; Buckley, Mark J.

2015-01-01

Recognition memory deficits, even after short delays, are sometimes observed following hippocampal damage. One hypothesis links the hippocampus with processes in updating contextual memory representation. Here, we used fornix transection, which partially disconnects the hippocampal system, and compares the performance of fornix-transected monkeys…

NATURAL ATTENUATION OF MTBE

EPA Science Inventory

For the case studies, the MTBE, TBA, and BTEX plume will be studied in a longitudinal transect along the center-line of the plume, and at least two transects perpendicular to ground water flow. Water samples will be analyzed for the concentration of MTBE, TBA, BTEX, methane, sulf...

Baseline channel morphology and bank erosion inventory of South Fork Campbell Creek at Campbell Tract, Anchorage, Alaska, 1999 and 2000

USGS Publications Warehouse

Curran, Janet H.

2001-01-01

South Fork Campbell Creek drains largely undeveloped land in Anchorage, Alaska, but supports heavy use near the Bureau of Land Management (BLM) Campbell Tract facility for recreation and environmental education. To help assess the impacts of human activities in the basin on biological communities, particularly aquatic and terrestrial biota, morphological changes to the channel bed and banks were monitored for 2 years. Erosion conditions and rates of change were measured and 11 transects were surveyed in three reaches of Campbell Creek near the BLM Campbell Creek Science Center in 1999. Repeat measurements at these 33 transects in 2000 documented noticeable differences between horizontal or vertical channel position at eight transects. Repeat measurements of 51 erosion pins at the survey transects provided details of bank erosion between the 2 years. Annual erosion rates at the erosion pins ranged from 0.81 foot per year of erosion to 0.16 foot per year of deposition.

Litmus paper helps detect potential pancreatoenterostomy leakage.

PubMed

Yamaguchi, K; Chijiwa, K; Shimizu, S; Yokohata, K; Tanaka, M

1998-03-01

Leakage of pancreatoenterostomy remains as a serious and fatal complication after pancreatectomy. Several risk factors have been reported, ie, normal pancreatic parenchyma, small pancreatic duct, a large amount of intraoperative blood loss, management of the cut surface of the pancreas, and the presence of preoperative jaundice. Transected pancreatic ductules on the cut surface of the pancreas that are not drained into the main pancreatic duct after pancreatectomy are one of the risks. The pancreatic juice is alkaline and turns red litmus to blue. In order to detect the transected pancreatic ductules on the cut surface of the pancreas, red litmus paper is applied to the cutting surface of the pancreas after stimulation of secretin. Nondrained, transected pancreatic ductules on the cut surface of the pancreas can be detected as blue spots on the red litmus paper. The corresponding areas to the blue spots can be transfixed with sutures to close the nondrained and transected pancreatic ductules. Litmus paper can be expected to detect pancreatoenterostomy leakage after pancreatectomy.

Double transosseous pull out suture technique for transection of posterior horn of medial meniscus.

PubMed

Ahn, Jin Hwan; Wang, Joon Ho; Lim, Hong Chul; Bae, Ji Hoon; Park, Joon Soo; Yoo, Jae Chul; Shyam, Ashok Kumar

2009-03-01

Transection injury (complete radial tear, root tear) in the posterior horn of medial meniscus will lead to loss of hoop strain, extrusion of the meniscus and early degenerative changes. The posterior horn of medial meniscus is amenable to repair due to its good blood supply and repair is the procedure of choice for these injuries. In cases of transection of the medial meniscus posterior horn, the meniscus can be repaired by a pull out suture technique using trans-septal portal. The single transosseous pull out suturing technique is a point fixation technique with limited contact area having low and inhomogeneous contact pressure. This article describes a double transosseous pull out suture technique using trans-septal portal for the repair of transection of posterior horn of medial meniscus. Use of double transosseous technique provides more secure fixation, more homogeneous and wider contact pressure area between meniscus and the bone, improving the healing potential of the repair.

Intervention analysis of power plant impact on fish populations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Madenjian, C.P.

1984-10-01

Intervention analysis was applied to 10 yr (years 1973-1982) of field fish abundance data at the D. C. Cook Nuclear Power Plant, southeastern Lake Michigan. Three log-transformed catch series, comprising monthly observations, were examined for each combination of two species (alewife, Alosa pseudoharenga, or yellow perch, Perca flavescens) and gear (trawl or gill net): catch at the plant discharged transect, catch at the reference transect, and the ratio of plant catch to reference catch. Time series separated by age groups were examined. Based on intervention analysis, no change in the abundance of fish populations could be attributed to plant operation.more » Additionally, a modification of the intervention analysis technique was applied to investigate trends in abundance at both the plant discharge and reference transects. Significant declines were detected for abundance of alewife adults at both of the transects. Results of the trend analysis support the contention that the alewives have undergone a lakewide decrease in abundance during the 1970s.« less

Expanding biological data standards development processes for US IOOS: visual line transect observing community for mammal, bird, and turtle data

USGS Publications Warehouse

Fornwall, M.; Gisiner, R.; Simmons, S. E.; Moustahfid, Hassan; Canonico, G.; Halpin, P.; Goldstein, P.; Fitch, R.; Weise, M.; Cyr, N.; Palka, D.; Price, J.; Collins, D.

2012-01-01

The US Integrated Ocean Observing System (IOOS) has recently adopted standards for biological core variables in collaboration with the US Geological Survey/Ocean Biogeographic Information System (USGS/OBIS-USA) and other federal and non-federal partners. In this Community White Paper (CWP) we provide a process to bring into IOOS a rich new source of biological observing data, visual line transect surveys, and to establish quality data standards for visual line transect observations, an important source of at-sea bird, turtle and marine mammal observation data. The processes developed through this exercise will be useful for other similar biogeographic observing efforts, such as passive acoustic point and line transect observations, tagged animal data, and mark-recapture (photo-identification) methods. Furthermore, we suggest that the processes developed through this exercise will serve as a catalyst for broadening involvement by the larger marine biological data community within the goals and processes of IOOS.

Seismic velocity structure of the sediment seaward of Cascadia Subduction Zone deformation front

NASA Astrophysics Data System (ADS)

Han, S.; Gibson, J. C.; Carbotte, S. M.; Canales, J. P.; Nedimovic, M. R.; Carton, H. D.

2015-12-01

We present seismic velocity structure of the sediment section seaward of the Cascadia Subduction Zone deformation front (DF), derived from multichannel seismic data acquired during the 2012 Juan de Fuca Ridge to Trench experiment. Detailed velocity analyses are conducted on every 100th prestack-time-migrated common reflection point gather (625 m spacing) within 45 km seaward of the DF along two ridge-to-trench transects offshore Oregon at 44.6˚N and Washington at 47.4˚N respectively, and on every 200th common mid-point gather (1250 m spacing) along a ~400 km-long trench-parallel transect ~15 km from the DF. We observe a landward increase of sediment velocity starting from ~15-20 km from the DF on both Oregon and Washington transects, which may result from increased horizontal compressive tectonic stress within the accretionary wedge and thermally induced dehydration processes in the sediment column. Although the velocity of near-basement sediments at 30 km from the DF is similar (~3.1 km/s) on both transects, the velocity increases are larger on the Washington transect, to ~4.0 km/s beneath the DF (sediment thickness ~3.2 km), than on the Oregon transect, to ~3.6 km/s beneath the DF (sediment thickness ~3.5 km). The long-wavelength sediment velocity structure on the trench-parallel transect confirms this regional difference in deep sediment velocity and also highlights variations related to a group of WNW-trending strike-slip faults along the margin. Offshore Washington, where higher sediment velocity seaward of the DF is observed, the accretionary wedge is wide with a decollement located close to the basement and landward-verging thrust faults. By contrast, offshore Oregon, the lower sediment velocity seaward of the DF is associated with a narrow accretionary wedge, a shallow decollement ~1 km above the basement, and seaward-verging thrust faults. The regional differences in deep sediment velocity may be related to the along-strike variation in sediment composition, esp. clay mineral content, which may modulate the pore fluid pressure in the sediment through dehydration reactions, and affect the mechanical properties of the accretionary wedge further landward.

Propagation of vent CO2 in a subtropical shallow-water ecosystem assessed by stable carbon isotopes

NASA Astrophysics Data System (ADS)

Cheng, Y. F.; Chen, C. T. A.; Liao, Y. M.; Lin, Y. S.

2016-02-01

Carbon cycle of the ocean plays an important role in the global change associated with the emission of CO2. Anthropogenic CO2 dissolves in seawater, changes carbon chemistry of the ocean, and affects marine life in different and complicated ways. In this study, we investigated stable carbon isotope systematics of a shallow-water hydrothermal field near the Kueishantao Islet off NE Taiwan, which has vent gas composition dominated by CO2 and world record breaking low pH hydrothermal fluids. By studying this natural laboratory of ocean acidification, we aim at clarifying to which extent the high dosage of CO2 propagates in the subtropical shallow-water ecosystem, and how it affects the carbon cycle. Samples of seawater and suspended particles were collected from stations of two nearshore-offshore transects, one with hydrothermal vents at the nearshore end (Transect M, 1230 m long) and the other serving as the baseline (Transect B, 1560 m long). Surface seawater of Transect M showed increasing pH in the offshore direction, from 5.8 at the vent mouths to 7.6 at the most distant station. In contrast, pH of surface water decreased seaward from 8.0 to 7.8 in Transect B. The δ13C values of the vent CO2 averaged -6.4‰, consistent with the range attributed to mantle CO2. Seawater DIC δ13C values of Transect M were 13C-depleted (as negative as -2.5‰) at the vent mouths, and became increasingly 13C-enriched till 0.7‰ at the most distant station. This pattern is in clear contrast to that of Transect B, the DIC δ13C values of which decreased from 0.7 to 0.6 ‰ in the offshore direction. We concluded that the vent CO2 has propagated in the surface ocean at least >700 m away from the hydrothermal field. Our next step is to explore how the vent CO2 affects the stable carbon isotopes of particulate organic matter, and to assess the effect of vent CO2 using quantitative approaches.

Reconstructing fish movements between coastal wetland and ...

EPA Pesticide Factsheets

The use of resources from multiple habitats has been shown to be important to the production of aquatic consumers. To quantify the support of Great Lakes coastal wetland (WL) and nearshore (NS) habitats to yellow perch, we used otolith microchemistry to trace movements between the habitats. WL and NS water and fish samples were collected from lakes Huron and Michigan for water and otolith trace element analysis. Recently deposited otolith-edge Sr:Ca and Ba:Ca from otoliths were strongly correlated with the chemistry of the water in which fish were caught. In general, Sr:Ca and Ba:Ca in otoliths were significantly greater for individuals collected from WL areas. Because of these observed chemical differences between WL and NS habitats, quadratic discriminant function analysis (QDFA) was used to classify individuals with high accuracy to the habitat from which they were collected. We then combined the predictive abilities of QDFA with the otolith chemistry transect data that represents an individuals’ entire life, to classify habitat use through each fish’s life. Our results suggest larval use of WL habitats as well as three life histories for adult yellow perch. These strategies include (1) fish utilizing WL once annually (2) WL residents (3) WL residence as juveniles followed by movement to nearshore as adults. This application represents a novel use of transect otolith microchemistry to reconstruct fish movements between freshwater environments acro

Evaluating the intensity of fire at the Acheulian site of Gesher Benot Ya'aqov—Spatial and thermoluminescence analyses

PubMed Central

Richter, Daniel; Goren-Inbar, Naama

2017-01-01

This manuscript presents an attempt to evaluate the intensity of fire through spatial patterning and thermoluminescence methodology. Previous studies of Layer II-6 Level 2 at the Acheulian site of Gesher Benot Ya‘aqov suggested that hominins differentiated their activities across space, including multiple activities around a hearth reconstructed on the basis of the distribution of burned flint artifacts. A transect of ~4 m was extended from the center of the reconstructed hearth of Level 2 to its periphery in order to examine the intensity of fire. Burned and unburned flint microartifacts were sampled along this transect. The results of earlier and current thermoluminescence (TL) analysis demonstrate a general agreement with the macroscopic determination of burning, indicating that the possibility of misinterpretation based on macroscopic observations is negligible. The TL signal from flint microartifacts close to the hearth’s center shows unambiguous signs of strong heating, whereas with increasing distance from the hearth the TL signal can be interpreted as a result of decreasing temperatures and/or shorter durations of exposure to fire in addition to a decreasing number of flints showing fire damage. Our study shows that TL analysis can identify some variation in fire intensity, which allows a more precise classification of burned flint microartifacts with respect to their heating history. PMID:29145432

Geophysical evidence for non-uniform permafrost degradation after fire across boreal landscapes

NASA Astrophysics Data System (ADS)

Minsley, B. J.; Pastick, N. J.; Wylie, B. K.; Brown, D. N.; Kass, A.

2015-12-01

Fire can be a significant driver of permafrost change in boreal landscapes, altering the availability of soil carbon and nutrients that have important implications for future climate and ecological succession. However, not all landscapes are equally susceptible to fire-induced change. As fire frequency is expected to increase in the high latitudes, methods to understand the vulnerability and resilience of different landscapes to permafrost degradation are needed. We present a combination of multi-scale remote sensing, geophysical, and field observations that reveal details of both near-surface (<1 m) and deeper impacts of fire on permafrost. Along 11 transects that span burned-unburned boundaries in different landscape settings within interior Alaska, subsurface imaging indicates locations where permafrost appears to be resilient to disturbance from fire, areas where warm permafrost conditions exist that may be most vulnerable to future change, and also where permafrost has thawed. High-resolution geophysical data corroborate remote sensing interpretations of near-surface permafrost, and also add new high-fidelity details of spatial heterogeneity that extend from the shallow subsurface to depths of about 10 m. Data collected along each transect include observations of active layer thickness (ALT), organic layer thickness (OLT), plant species cover, electrical resistivity tomography (ERT), and downhole Nuclear Magnetic Resonance (NMR) measurements. Results show that post-fire impacts on permafrost can be variable, and depend on multiple factors such as fire severity, soil texture, and soil moisture.

Bacterial communities in Arctic first-year drift ice during the winter/spring transition.

PubMed

Eronen-Rasimus, Eeva; Piiparinen, Jonna; Karkman, Antti; Lyra, Christina; Gerland, Sebastian; Kaartokallio, Hermanni

2016-08-01

Horizontal and vertical variability of first-year drift-ice bacterial communities was investigated along a North-South transect in the Fram Strait during the winter/spring transition. Two different developmental stages were captured along the transect based on the prevailing environmental conditions and the differences in bacterial community composition. The differences in the bacterial communities were likely driven by the changes in sea-ice algal biomass (2.6-5.6 fold differences in chl-a concentrations). Copiotrophic genera common in late spring/summer sea ice, such as Polaribacter, Octadecabacter and Glaciecola, dominated the bacterial communities, supporting the conclusion that the increase in the sea-ice algal biomass was possibly reflected in the sea-ice bacterial communities. Of the dominating bacterial genera, Polaribacter seemed to benefit the most from the increase in algal biomass, since they covered approximately 39% of the total community at the southernmost stations with higher (>6 μg l(-1) ) chl-a concentrations and only 9% at the northernmost station with lower chl-a concentrations (<6 μg l(-1) ). The sea-ice bacterial communities also varied between the ice horizons at all three stations and thus we recommend that for future studies multiple ice horizons be sampled to cover the variability in sea-ice bacterial communities in spring. © 2016 Society for Applied Microbiology and John Wiley & Sons Ltd.

Turkey vulture surveys in Cuba

USGS Publications Warehouse

Wotzkow, C.; Wiley, J.W.

1988-01-01

Turkey Vultures (Cathartes aura), were surveyed monthly in Cuba from March 1982-January 1983. A total of 25371 vultures were tallied in 7186 km (3.5 vultures/transect km) of roadside counting along main highways leading from the city of La Habana (northwestern Cuba) to the city of Las Tunas (southeast). Numbers of vultures counted declined substantially beyond 200 m from the transect road. Density of vultures observed within 200 m of the road along the transect route was 0.06/ha. Highest counts were obtained in March, April and June. Turkey Vulture flying activity was greatest during the periods 0900-1200 H and 1400-1700 H.

Comparison of rangeland vegetation sampling techniques in the Central Grasslands

USGS Publications Warehouse

Stohlgren, T.J.; Bull, K.A.; Otsuki, Yuka

1998-01-01

Maintaining native plant diversity, detecting exotic species, and monitoring rare species are becoming important objectives in rangeland conservation. Four rangeland vegetation sampling techniques were compared to see how well they captured local pant diversity. The methods tested included the commonly used Parker transects, Daubenmire transects as modified by the USDA Forest Service, a new transect and 'large quadrat' design proposed by the USDA Agricultural Research Service, and the Modified-Whittaker multi-scale vegetation plot. The 4 methods were superimposed in shortgrass steppe, mixed grass prairie, northern mixed prairie, and tallgrass prairie in the Central Grasslands of the United States with 4 replicates in each prairie type. Analysis of variance tests showed significant method effects and prairie type effects, but no significant method X type interactions for total species richness, the number of native species, the number of species with less than 1 % cover, and the time required for sampling. The methods behaved similarly in each prairie type under a wide variety of grazing regimens. The Parker, large quadrat, and Daubenmire transects significantly underestimated the total species richness and the number of native species in each prairie type, and the number of species with less than 1 % cover in all but the tallgrass prairie type. The transect techniques also consistently missed half the exotic species, including noxious weeds, in each prairie type. The Modified-Whittaker method, which included an exhaustive search for plant species in a 20 x 50 m plot, served as the baseline for species richeness comparisons. For all prairie types, the Modified-Whittaker plot captured an average of 42. (?? 2.4; 1 S.E.) plant species per site compared to 15.9 (?? 1.3), 18.9 (?? 1.2), and 22.8 (?? 1.6) plant species per site using the Parker, large quadrat, and Daubenmire transect methods, respectively. The 4 methods captured most of the dominant species at each site and thus produced similar results for total foliar cover and soil cover. The detection and measurement of exotic plant species were greatly enhanced by using ten 1 m2 subplots in a multi-scale sampling design and searching a larger area (1,000 m2) at each site. Even with 4 replicate sites, the transect methods usually captured, and thus would monitor, 36 to 66 % of the plant species at each site. To evaluate the status and trends of common, rare, and exotic plant species at local, regional, and national scales, innovative, multi-scale methods must replace the commonly used transect methods to the past.

Effect of Chorda Tympani Nerve Transection on Salt Taste Perception in Mice

PubMed Central

Ishiwatari, Yutaka; Theodorides, Maria L.; Bachmanov, Alexander A.

2011-01-01

Effects of gustatory nerve transection on salt taste have been studied extensively in rats and hamsters but have not been well explored in the mouse. We examined the effects of chorda tympani (CT) nerve transection on NaCl taste preferences and thresholds in outbred CD-1 mice using a high-throughput phenotyping method developed in our laboratory. To measure taste thresholds, mice were conditioned by oral self-administration of LiCl or NaCl and then presented with NaCl concentration series in 2-bottle preference tests. LiCl-conditioned and control NaCl-exposed mice were given bilateral transections of the CT nerve (LiCl-CTX, NaCl-CTX) or were left intact as controls (LiCl-CNT, NaCl-CNT). After recovery from surgery, mice received a concentration series of NaCl (0–300 mM) in 48-h 2-bottle tests. CT transection increased NaCl taste thresholds in LiCl-conditioned mice and eliminated avoidance of concentrated NaCl in control NaCl-exposed mice. This demonstrates that in mice, the CT nerve is important for detection and recognition of NaCl taste and is necessary for the normal avoidance of high concentrations of NaCl. The results of this experiment also show that the method of high-throughput phenotyping of salt taste thresholds is suitable for detecting changes in the taste periphery in mouse genetic studies. PMID:21743094

Selectivity in the Reinnervation of the Lateral Gastrocnemius Muscle after Nerve Repair with Ethyl Cyanoacrylate in the Rat

PubMed Central

Landegren, Thomas; Risling, Mårten; Hammarberg, Henrik; Persson, Jonas K. E.

2011-01-01

There is a need for complementary surgical techniques that enable rapid and reliable primary repair of transected nerves. Previous studies after peripheral nerve transection and repair with synthetic adhesives have demonstrated regeneration to an extent comparable to that of conventional techniques. The aim of this study was to compare two different repair techniques on the selectivity of muscle reinnervation after repair and completed regeneration. We used the cholera toxin B technique of retrograde axonal tracing to evaluate the morphology, the number, and the three-dimensional location of α-motoneurons innervating the lateral gastrocnemius muscle and compared the results after repair with either ethyl cyanoacrylate (ECA) or epineural sutures of the transected parent sciatic nerve. In addition, we recorded the wet weight of the muscle. Six months after transection and repair of the sciatic nerve, the redistribution of the motoneuron pool was markedly disorganized, the motoneurons had apparently increased in number, and they were scattered throughout a larger volume of the spinal cord gray matter with a decrease in the synaptic coverage compared to controls. A reduction in muscle weight was observed as well. No difference in morphometric variables or muscle weight between the two repair methods could be detected. We conclude that the selectivity of motor reinnervation following sciatic nerve transection and subsequent repair with ECA is comparable to that following conventional micro suturing. PMID:21577248

Persulfate injection into a gasoline source zone.

PubMed

Sra, Kanwartej S; Thomson, Neil R; Barker, Jim F

2013-07-01

One pore volume of unactivated sodium persulfate was delivered into an emplaced gasoline residual source zone at CFB Borden. Concentrations of inorganic species (S2O8(2-), SO4(2-), Na(+), dissolved inorganic carbon (DIC)) and selected gasoline compounds (benzene, toluene, ethylbenzene, xylenes, trimethylbenzenes and naphthalene) were monitored across a transect equipped with 90 multilevel sampling points for >10months post-injection. Mass loading (M˙) of compounds constructed from the transect data was used for assessment purposes. Breakthrough of inorganic species was observed when the injection slug crossed the monitoring transect. An increase in [Formula: see text] indicated persulfate consumption during oxidation of gasoline compounds or degradation due to the interaction with aquifer materials. M˙DIC increased by >100% suggesting some mineralization of gasoline compounds during treatment. Mass loading for all the monitored gasoline compounds reduced by 46 to 86% as the inorganic slug crossed the monitoring transect. The cumulative mass discharge across the monitoring transect was 19 to 58% lower than that expected without persulfate injection. After the inorganic injection slug was flushed from the source zone a partial rebound (40 to 80% of baseline levels) of mass discharge of the monitored gasoline compounds was observed. The ensemble of data collected provides insight into the fate and transport of the injected persulfate solution, and the accompanying treatment of a gasoline the source zone. Copyright © 2013 Elsevier B.V. All rights reserved.

Depth Derivation from the Worldview-2 Satellite Using Hyperspectral Imagery

DTIC Science & Technology

2009-03-01

6 C. MULTISPECTRAL IMAGERY FROM QUICKBIRD ..............................7 D . HYPERSPECTRAL IMAGERY FROM AVIRIS...27 D . TRANSECTS .................................................................................................29 1. Transect 1...520-600nm), red (630-690nm) and near-IR (760-900nm). Figure 4. Quickbird Satellite (from: http://www.digitalglobe.com/index.php/85/QuickBird) D

AMPHIPOD COMMUNITY RESPONSE TO STRESS INDUCED BY ALGAL MATS IN A PACIFIC NORTHWEST ESTUARY

EPA Science Inventory

Amphipod, algal and sediment samples were taken at two- to four-week intervals from June through December, 2000 along two transects in Yaquina Bay, OR. The transects extended from within the Zostera marina bed at the river channel edge through intertidal burrowing shrimp ...

Electrical Resistivity and Seismic Surveys at the Nevada Test Site, Nevada, April 2007

USGS Publications Warehouse

Haines, Seth S.; Burton, Bethany L.; Sweetkind, Donald S.; Asch, Theodore H.

2008-01-01

In April 2007, the USGS collected direct-current (DC) electrical resistivity data and shear- (S) and compressional- (P) wave seismic data to provide new detail of previously mapped, overlapping fault splays at two administrative areas in the Nevada Test Site (NTS). In NTS Area 7, we collected two-dimensional DC resistivity data along a transect crossing the Yucca Fault parallel to, and between, two transects along which resistivity data were collected in a previous study in 2006. In addition, we collected three-dimensional DC resistivity data in a grid that overlies part of the 2007 transect. The DC resistivity data show that the fault has a footwall that is more conductive than the hanging wall and an along-strike progression of the fault in a location where overlapping splays are present. Co-located with the northernmost of the two 2006 DC resistivity transects, we acquired S- and P-wave seismic data for both reflection and refraction processing. The S-wave data are corrupted by large amounts of converted (P-wave) energy likely due to the abundance of fractured caliche in the shallow subsurface. The P-wave data show minimal reflected energy, but they show clear refracted first arrivals. We have inverted these first arrival times to determine P-wave seismic velocity models. The seismic model for the transect in Area 7 shows low velocities extending to the base of the model at the location of the Yucca Fault, as well as low velocities at the eastern end of the transect, in the vicinity of the adjacent crater. These new surveys provide further detail about the geometry of the Yucca Fault in this location where it shows two overlapping splays. We collected P- and S-wave seismic data along a transect in the southern part of NTS Area 2, corresponding with the location of a 2006 DC resistivity transect that targeted a set of small faults identified with field mapping. Again, the S-wave data are difficult to interpret. The P-wave data show clear first arrivals that we inverted, yielding a velocity model that shows lateral heterogeneity similar to the 2006 DC resistivity models. Finally, we collected P-wave data along a second transect in Area 2, located north of the first line and in an area of a very minor fault that was targeted by another 2006 DC resistivity survey. The P-wave refraction velocity model shows generally high velocities, with a zone of somewhat lower velocities in the central part of the transect. The position of the low velocity zone corresponds with the location of a minor fault, though it is unclear whether the two are related. Together, these results demonstrate the value of geophysical data for mapping the subsurface extent of faults. The 2007 DC resistivity data complement the 2006 data and provide important new detail of the overlapping fault splays. The seismic data demonstrate the ability of P-wave refraction methods to identify the damage zones at faults, and they show the difficulties associated with S-wave methods in areas with caliche. Combining all of the geophysical data from the Area 7 studies, we are able to develop a coherent interpretation of the relation between the site geology, the fault, and the observations.

Uranium isotopes in tree bark as a spatial tracer of environmental contamination near former uranium processing facilities in southwest Ohio.

PubMed

Conte, Elise; Widom, Elisabeth; Kuentz, David

2017-11-01

Inappropriate handling of radioactive waste at nuclear facilities can introduce non-natural uranium (U) into the environment via the air or groundwater, leading to anthropogenic increases in U concentrations. Uranium isotopic analyses of natural materials (e.g. soil, plants or water) provide a means to distinguish between natural and anthropogenic U in areas near sources of radionuclides to the environment. This study examines the utility of two different tree bark transects for resolving the areal extent of U atmospheric contamination using several locations in southwest Ohio that historically processed U. This study is the first to utilize tree bark sampling transects to assess environmental contamination emanating from a nuclear facility. The former Fernald Feed Materials Production Center (FFMPC; Ross, Ohio) produced U metal from natural U ores and recycled nuclear materials from 1951 to 1989. Alba Craft Laboratory (Oxford, Ohio) machined several hundred tons of natural U metal from the FFMPC between 1952 and 1957. The Herring-Hall-Marvin Safe Company (HHM; Hamilton, Ohio) intermittently fabricated slugs rolled from natural U metal stock for use in nuclear reactors from 1943 to 1951. We have measured U concentrations and isotope signatures in tree bark sampled along an ∼35 km SSE-NNW transect from the former FFMPC to the vicinity of the former Alba Craft laboratories (transect #1) and an ∼20 km SW- NE (prevailing local wind direction) transect from the FFMPC to the vicinity of the former HHM (transect #2), with a focus on old trees with thick, persistent bark that could potentially record a time-integrated signature of environmental releases of U related to anthropogenic activity. Our results demonstrate the presence of anthropogenic U contamination in tree bark from the entire study area in both transects, with U concentrations within 1 km of the FFMPC up to ∼400 times local background levels of 0.066 ppm. Tree bark samples from the Alba Craft and HHM transects exhibit increasing U concentrations within ∼5 and ∼10 km, respectively of the FFMPC. The 236 U/ 238 U isotopic ratios in tree bark from both transects increase progressively towards the FFMPC with values as high as 2.00 × 10 -4  at the FFMPC. Tree bark sampled within 1 km of the FFMPC exhibits clear evidence for both enriched and depleted uranium with 235 U/ 238 U values from 0.00461 to 0.00736, with 234 U/ 238 U activity ratio ranging from 0.53 to 0.96, and 236 U/ 238 U from 6.05 × 10 -5 to 1.05 × 10 -4 . Tree bark from transect #1 between 1 and 30 km from the FFMPC exhibits depleted and natural 235 U/ 238 U values ranging from 0.00552 to 0.00726 [ 234 U/ 238 U activity ratio: 0.69-1.04; 236 U/ 238 U: 2.49 × 10 -6 - 2.00 × 10 -4 ]. Tree bark from transect #2 sampled between 1 and ∼20 km away from the FFMPC exhibits evidence of enriched and depleted U in the environment with 235 U/ 238 U ranging from 0.00635 to 0.00738 [ 234 U/ 238 U activity ratio: 0.83-0.98; 236 U/ 238 U: 1.43 × 10 -5 - 2.00 × 10 -4 ]. Results from scanning electron microscopy with energy dispersive spectrometry provides evidence for U-rich particles as the source of contamination found in tree bark growing within 1-3 km of the former FFMPC. Such observations are consistent with the previously observed 14 μm U-rich particle identified in tree bark sampled within 1 km of the FFMPC (Conte et al., 2015). Overall, this study shows the usefulness of a tree bark sample transect to assess the areal extent of atmospheric contaminant U stemming from nuclear facilities. Copyright © 2017 Elsevier Ltd. All rights reserved.

Data management for support of the Oregon Transect Ecosystem Research (OTTER) project

NASA Technical Reports Server (NTRS)

Skiles, J. W.; Angelici, Gary L.

1993-01-01

Management of data collected during projects that involve large numbers of scientists is an often overlooked aspect of the experimental plan. Ecosystem science projects like the Oregon Transect Ecosystem Research (OTTER) Project that involve many investigators from many institutions and that run for multiple years, collect and archive large amounts of data. These data range in size from a few kilobytes of information for such measurements as canopy chemistry and meteorological variables, to hundreds of megabytes of information for such items as views from multi-band spectrometers flown on aircraft and scenes from imaging radiometers aboard satellites. Organizing and storing data from the OTTER Project, certifying those data, correcting errors in data sets, validating the data, and distributing those data to other OTTER investigators is a major undertaking. Using the National Aeronautics and Space Administration's (NASA) Pilot Land Data System (PLDS), a Support mechanism was established for the OTTER Project which accomplished all of the above. At the onset of the interaction between PLDS and OTTER, it was not certain that PLDS could accomplish these tasks in a manner that would aid researchers in the OTTER Project. This paper documents the data types that were collected under the auspices of the OTTER Project and the procedures implemented to store, catalog, validate, and certify those data. The issues of the compliance of investigators with data-management requirements, data use and certification, and the ease of retrieving data are discussed. We advance the hypothesis that formal data management is necessary in ecological investigations involving multiple investigators using many data gathering instruments and experimental procedures. The issues and experience gained in this exercise give an indication of the needs for data management systems that must be addressed in the coming decades when other large data-gathering endeavors are undertaken by the ecological science community.

Locating waterfowl observations on aerial surveys

USGS Publications Warehouse

Butler, W.I.; Hodges, J.I.; Stehn, R.A.

1995-01-01

We modified standard aerial survey data collection to obtain the geographic location for each waterfowl observation on surveys in Alaska during 1987-1993. Using transect navigation with CPS (global positioning system), data recording on continuously running tapes, and a computer data input program, we located observations with an average deviation along transects of 214 m. The method provided flexibility in survey design and data analysis. Although developed for geese nesting near the coast of the Yukon-Kuskokwim Delta, the methods are widely applicable and were used on other waterfowl surveys in Alaska to map distribution and relative abundance of waterfowl. Accurate location data with GIS analysis and display may improve precision and usefulness of data from any aerial transect survey.

Evaluation of line transect sampling based on remotely sensed data from underwater video

USGS Publications Warehouse

Bergstedt, R.A.; Anderson, D.R.

1990-01-01

We used underwater video in conjunction with the line transect method and a Fourier series estimator to make 13 independent estimates of the density of known populations of bricks lying on the bottom in shallows of Lake Huron. The pooled estimate of density (95.5 bricks per hectare) was close to the true density (89.8 per hectare), and there was no evidence of bias. Confidence intervals for the individual estimates included the true density 85% of the time instead of the nominal 95%. Our results suggest that reliable estimates of the density of objects on a lake bed can be obtained by the use of remote sensing and line transect sampling theory.

Pinch-off syndrome: transection of implantable central venous access device.

PubMed

Sugimoto, Takuya; Nagata, Hiroshi; Hayashi, Ken; Kano, Nobuyasu

2012-11-30

As the population of people with cancer increases so does the number of patients who take chemotherapy. Majority of them are administered parentally continuously. Implantable central venous catheter device is a good choice for those patients; however, severe complication would occur concerning the devices. Pinch-off syndrome is one of the most severe complications. The authors report a severe case of pinch-off syndrome. The patient with the implantable central venous device could not take chemotherapy because the device occluded. Further examination revealed the transection of the catheter. The transected fragment of the catheter in the heart was successfully removed by using a loop snare placed through the right femoral vein.

Development of a decision support system for monitoring, reporting and forecasting ecological conditions of the Appalachian Trail

USGS Publications Warehouse

Wang, Yeqiao; Nemani, Ramakrishna; Dieffenbach, Fred; Stolte, Kenneth; Holcomb, Glenn B.; Robinson, Matt; Reese, Casey C.; McNiff, Marcia; Duhaime, Roland; Tierney, Geri; Mitchell, Brian; August, Peter; Paton, Peter; LaBash, Charles

2010-01-01

This paper introduces a collaborative multi-agency effort to develop an Appalachian Trail (A.T.) MEGA-Transect Decision Support System (DSS) for monitoring, reporting and forecasting ecological conditions of the A.T. and the surrounding lands. The project is to improve decisionmaking on management of the A.T. by providing a coherent framework for data integration, status reporting and trend analysis. The A.T. MEGA-Transect DSS is to integrate NASA multi-platform sensor data and modeling through the Terrestrial Observation and Prediction System (TOPS) and in situ measurements from A.T. MEGA-Transect partners to address identified natural resource priorities and improve resource management decisions.

Stereotactic radiosurgery for deep intracranial arteriovenous malformations, part 1: Brainstem arteriovenous malformations.

PubMed

Cohen-Inbar, Or; Ding, Dale; Chen, Ching-Jen; Sheehan, Jason P

2016-02-01

The management of brainstem arteriovenous malformations (AVM) are one of the greatest challenges encountered by neurosurgeons. Brainstem AVM have a higher risk of hemorrhage compared to AVM in other locations, and rupture of these lesions commonly results in devastating neurological morbidity and mortality. The potential morbidity associated with currently available treatment modalities further compounds the complexity of decision making for affected patients. Stereotactic radiosurgery (SRS) has an important role in the management of brainstem AVM. SRS offers acceptable obliteration rates with lower risks of hemorrhage occurring during the latency period. Complex nidal architecture requires a multi-disciplinary treatment approach. Nidi partly involving subpial/epipial regions of the dorsal midbrain or cerebellopontine angle should be considered for a combination of endovascular embolization, micro-surgical resection and SRS. Considering the fact that incompletely obliterated lesions (even when reduced in size) could still cause lethal hemorrhages, additional treatment, including repeat SRS and surgical resection should be considered when complete obliteration is not achieved by first SRS. Patients with brainstem AVM require continued clinical and radiological observation and follow-up after SRS, well after angiographic obliteration has been confirmed. Copyright © 2015 Elsevier Ltd. All rights reserved.

Chronic Traumatic Encephalopathy in Athletes: Progressive Tauopathy following Repetitive Head Injury

PubMed Central

McKee, Ann C.; Cantu, Robert C.; Nowinski, Christopher J.; Hedley-Whyte, E. Tessa; Gavett, Brandon E.; Budson, Andrew E.; Santini, Veronica E.; Lee, Hyo-Soon; Kubilus, Caroline A.; Stern, Robert A.

2009-01-01

Since the 1920s, it has been known that the repetitive brain trauma associated with boxing may produce a progressive neurological deterioration, originally termed “dementia pugilistica” and more recently, chronic traumatic encephalopathy (CTE). We review the 47 cases of neuropathologically verified CTE recorded in the literature and document the detailed findings of CTE in 3 professional athletes: one football player and 2 boxers. Clinically, CTE is associated with memory disturbances, behavioral and personality changes, Parkinsonism, and speech and gait abnormalities. Neuropathologically, CTE is characterized by atrophy of the cerebral hemispheres, medial temporal lobe, thalamus, mammillary bodies, and brainstem, with ventricular dilatation and a fenestrated cavum septum pellucidum. Microscopically, there are extensive tau-immunoreactive neurofibrillary tangles, astrocytic tangles, and spindle-shaped and threadlike neurites throughout the brain. The neurofibrillary degeneration of CTE is distinguished from other tauopathies by preferential involvement of the superficial cortical layers, irregular, patchy distribution in the frontal and temporal cortices, propensity for sulcal depths, prominent perivascular, periventricular and subpial distribution, and marked accumulation of tau-immunoreactive astrocytes. Deposition of beta amyloid, most commonly as diffuse plaques, occurs in fewer than half the cases. CTE is a neuropathologically distinct, slowly progressive tauopathy with a clear environmental etiology. PMID:19535999

Comparing census methods for the endangered Kirtland's Warbler

Treesearch

John R. Probst; Deahn M. Donner; Mike Worland; Jerry Weinrich; Phillip Huber; Kenneth R. Ennis

2005-01-01

We compared transect counts used for the annual official count of male Kirtland`s Warblers (Dendroica kirtlandii) to an observation-based mapping method of individually sighted males in 155 stands over 10 yrs. The annual census count almost tripled from 1990 to 1999. The transect and observation-based mapping method showed the same increasing trend...

Annual and seasonal temperature variance along an inter-tidal sediment transect in Yaquina bay, Oregon, 1999 - 2006

EPA Science Inventory

Sediment temperature was measured using submersible Onset TidbiT® recording thermistor thermometers at eelgrass (Zostera marina, Z. japonica) mid-rhizome root depth (~5 cm) at 6 stations on a transect from ~MLLW (mean lower low water) at the channel edge to near MHHW (mean higher...

ANNUAL CYCLE OF PERIPHYTON, ZOOPLANKTON, AND WATER QUALITY PARAMETERS ALONG A 5 STATION TRANSECT OF ESCAMBIA BAY, FL

EPA Science Inventory

Phytoplankton, zooplankton and water quality parameters were monitored monthly along a 5-station transect in Escambia Bay (Pensacola, FL) from fall 1999 to fall 2000. To provide insight into nutrient processing in Escambia Bay and effects of grazers on phytoplankton community st...

Effect of Hurricane Hugo on molluscan skeletal distributions,Salt River Bay, St. Croix, U.S. Virgin Islands

NASA Astrophysics Data System (ADS)

Miller, Arnold I.; Llewellyn, Ghislaine; Parsons, Karla M.; Cummins, Hays; Boardman, Mark R.; Greenstein, Benjamin J.; Jacobs, David K.

1992-01-01

Just prior to the passage of Hurricane Hugo over St. Croix, U.S. Virgin Islands, 35 molluscan skeletal samples were collected at 30 m intervals along a sampling transect in Salt River Bay, on the north-central coast. Three months after the hurricane, the transect was resampled to permit direct assessment of storm effects on skeletal distributions. Results indicate that spatial zonation of molluscan accumulations, associated with environmental transitions along the transect, was maintained in the wake of the hurricane. However, limited transport was diagnosed by comparing the compositions of prestorm and poststorm samples from the deepest, mud-rich subenvironment on the transect. In aggregate, the species richness of samples from the southern half of this zone increased from 16 to 40, and the abundance of species that were not among the characteristic molluscs of this subenvironment increased from 11% to 26%. These storm effects could probably not have been recognized, and attributed directly to Hugo, had there been no prestorm samples with which to compare directly the poststorm samples.

Accelerated recovery of sensorimotor function in a dog submitted to quasi-total transection of the cervical spinal cord and treated with PEG.

PubMed

Kim, C-Yoon; Hwang, In-Kyu; Kim, Hana; Jang, Se-Woong; Kim, Hong Seog; Lee, Won-Young

2016-01-01

A case report on observing the recovery of sensory-motor function after cervical spinal cord transection. Laminectomy and transection of cervical spinal cord (C5) was performed on a male beagle weighing 3.5 kg. After applying polyethylene glycol (PEG) on the severed part, reconstruction of cervical spinal cord was confirmed by the restoration of sensorimotor function. Tetraplegia was observed immediately after operation, however, the dog showed stable respiration and survival without any complication. The dog showed fast recovery after 1 week, and recovered approximately 90% of normal sensorimotor function 3 weeks after the operation, although urinary disorder was still present. All recovery stages were recorded by video camera twice a week for behavioral analysis. While current belief holds that functional recovery is impossible after a section greater than 50% at C5-6 in the canine model, this case study shows the possibility of cervical spinal cord reconstruction after near-total transection. Furthermore, this case study also confirms that PEG can truly expedite the recovery of sensorimotor function after cervical spinal cord sections in dogs.

Digitization of a geologic map for the Quebec-Maine-Gulf of Maine global geoscience transect

USGS Publications Warehouse

Wright, Bruce E.; Stewart, David B.

1990-01-01

The Bedrock Geologic Map of Maine was digitized and combined with digital geologic data for Quebec and the Gulf of Maine for the Quebec-Maine-Gulf of Maine Geologic Transect Project. This map is being combined with digital geophysical data to produce three-dimensional depictions of the subsurface geology and to produce cross sections of the Earth's crust. It is an essential component of a transect that stretches from the craton near Quebec City, Quebec, to the Atlantic Ocean Basin south of Georges Bank. The transect is part of the Global Geosciences Transect Project of the International Lithosphere Program. The Digital Line Graph format is used for storage of the digitized data. A coding scheme similar to that used for base category planimetric data was developed to assign numeric codes to the digitized geologic data. These codes were used to assign attributes to polygon and line features to describe rock type, age, name, tectonic setting of original deposition, mineralogy, and composition of igneous plutonic rocks, as well as faults and other linear features. The digital geologic data can be readily edited, rescaled, and reprojected. The attribute codes allow generalization and selective retrieval of the geologic features. The codes allow assignment of map colors based on age, lithology, or other attribute. The Digital Line Graph format is a general transfer format that is supported by many software vendors and is easily transferred between systems.

Effect of cochlear nerve electrocautery on the adult cochlear nucleus.

PubMed

Iseli, Claire E; Merwin, William H; Klatt-Cromwell, Cristine; Hutson, Kendall A; Ewend, Matthew G; Adunka, Oliver F; Fitzpatrick, Douglas C; Buchman, Craig A

2015-04-01

Electrocauterization and subsequent transection of the cochlear nerve induce greater injury to the cochlear nucleus than sharp transection alone. Some studies show that neurofibromatosis Type 2 (NF2) patients fit with auditory brainstem implants (ABIs) fail to achieve speech perception abilities similar to ABI recipients without NF2. Reasons for these differences remain speculative. One hypothesis posits poorer performance to surgically induced trauma to the cochlear nucleus from electrocautery. Sustained electrosurgical depolarization of the cochlear nerve may cause excitotoxic-induced postsynaptic nuclear injury. Equally plausible is that cautery in the vicinity of the cochlear nucleus induces necrosis. The cochlear nerve was transected in anesthetized adult gerbils sharply with or without bipolar electrocautery at varying intensities. Gerbils were perfused at 1, 3, 5, and 7 days postoperatively; their brainstem and cochleas were embedded in paraffin and sectioned at 10 μm. Alternate sections were stained with flourescent markers for neuronal injury or Nissl substance. In additional experiments, anterograde tracers were applied directly to a sectioned eighth nerve to verify that fluorescent-labeled profiles seen were terminating auditory nerve fibers. Cochlear nerve injury was observed from 72 hours postoperatively and was identical across cases regardless of surgical technique. Postsynaptic cochlear nucleus injury was not seen after distal transection of the nerve. By contrast, proximal transection was associated with trauma to the cochlear nucleus. Distal application of bipolar electrocautery seems safe for the cochlear nucleus. Application near the root entry zone must be used cautiously because this may compromise nuclear viability needed to support ABI stimulation.

Do McKinnon lists provide reliable data in bird species frequency? A comparison with transect-based data

NASA Astrophysics Data System (ADS)

Cento, Michele; Scrocca, Roberto; Coppola, Michele; Rossi, Maurizio; Di Giuseppe, Riccardo; Battisti, Corrado; Luiselli, Luca; Amori, Giovanni

2018-05-01

Although occurrence-based listing methods could provide reliable lists of species composition for a site, the effective reliability of this method to provide more detailed information about species frequency (and abundance) has been rarely tested. In this paper, we compared the species frequencies obtained for the same set of species-rich sites (wetlands of central Italy) from two different methods: McKinnon lists and line transects. In all sites we observed: (i) rapid cumulating curves of line transect abundance frequencies toward the asymptote represented by the maximum value in McKinnon occurrence frequency; (ii) a large amount of species having a low frequency with line transect method showing a high range of variation in frequency obtained by McKinnon lists; (iii) a set of species having a subdominant (>0.02-<0.05) and dominant species (>0.05) frequency with line transect showed all the highest value in McKinnon frequency. McKinnon lists provides only a coarse-grained proxy of species frequency of individuals distinguishing only between common species (having the highest values of McKinnon frequency) and rare species (all the other species). Although McKinnon lists have some points of strength, this method does not discriminate the frequencies inside the subset of common species (sub-dominant and dominant species). Therefore, we suggest a cautionary approach when McKinnon frequencies should be used to obtain complex univariate metrics of diversity.

Circumferential graben and the structural evolution of Alba Mons, Mars

NASA Astrophysics Data System (ADS)

Öhman, Teemu; McGovern, Patrick J.

2014-05-01

Alba Mons is a unique, very extensive but shallow volcanotectonic construct in northern Tharsis, Mars. Numerous models have been presented to explain the formation of Alba Mons and its most characteristic feature, a wristwatch-like pattern of radial and circumferential graben. We used a wide selection of topographic datasets to characterize the fault throw variation on nine topographic transects across the circumferential graben in order to provide observational constraints for the different formation models, and to gain further insight into the evolution of Alba Mons. In most of the transects, summed throws from outwards-facing (away from the center of the volcano) faults are larger than from the inwards-facing (towards the center) ones. Only the very gently sloping western transects show the opposite, emphasizing the east-west-asymmetry of Alba Mons. 10-40% of the observed topographic relief of Alba Mons along the nine transects can be accounted for by this throw difference between the inwards- and outwards-facing faults. These results are consistent with predictions of models suggesting an uplift mechanism to explain the formation of the circumferential graben, but not with models invoking central subsidence. Horizontal extensional strain along the transects varies between 0.5% and 2%, consistent with strain predictions of the late-stage sill complex inflation model of McGovern et al. (McGovern, P.J., Solomon, S.C., Head J.W. III, Smith, D.E., Zuber M.T., Neumann, G.A. [2001]. J. Geophys. Res. 106(E10), 23769-23809).

Topographic, bioclimatic, and vegetation characteristics of three ecoregion classification systems in North America: Comparisons along continent-wide transects

USGS Publications Warehouse

Thompson, R.S.; Shafer, S.L.; Anderson, K.H.; Strickland, L.E.; Pelltier, R.T.; Bartlein, P.J.; Kerwin, M.W.

2005-01-01

Ecoregion classification systems are increasingly used for policy and management decisions, particularly among conservation and natural resource managers. A number of ecoregion classification systems are currently available, with each system defining ecoregions using different classification methods and different types of data. As a result, each classification system describes a unique set of ecoregions. To help potential users choose the most appropriate ecoregion system for their particular application, we used three latitudinal transects across North America to compare the boundaries and environmental characteristics of three ecoregion classification systems [Ku??chler, World Wildlife Fund (WWF), and Bailey]. A variety of variables were used to evaluate the three systems, including woody plant species richness, normalized difference in vegetation index (NDVI), and bioclimatic variables (e.g., mean temperature of the coldest month) along each transect. Our results are dominated by geographic patterns in temperature, which are generally aligned north-south, and in moisture, which are generally aligned east-west. In the west, the dramatic changes in physiography, climate, and vegetation impose stronger controls on ecoregion boundaries than in the east. The Ku??chler system has the greatest number of ecoregions on all three transects, but does not necessarily have the highest degree of internal consistency within its ecoregions with regard to the bioclimatic and species richness data. In general, the WWF system appears to track climatic and floristic variables the best of the three systems, but not in all regions on all transects. ?? 2005 Springer Science+Business Media, Inc.

Recreational water quality response to a filtering barrier at a Great Lakes beach

USGS Publications Warehouse

Przybyla-Kelly, Kasia; Nevers, Meredith; Breitenbach, Cathy; Whitman, Richard L.

2013-01-01

Recent research has sought to determine the off- or onshore origin of fecal indicator bacteria (FIB) in order to improve local recreational water quality. In an effort to reduce offshore contamination, a filtering barrier (FB) was installed at Calumet Beach, Lake Michigan, Chicago, IL. A horseshoe-shaped curtain (146 m long, 0.18 mm apparent opening size, 1.5–1.6 m deepest point) was designed to exclude FIB containing or promoting debris and thus reduce the number of swimming advisories during the examination period of July through September 2012. Mean water Escherichia coli concentrations were significantly lower at southern transects (S; outside FB) than at transects within the FB (WN) and at northern transects (N; outside FB) (1.45 log (MPN)/100 ml vs. 1.74 and 1.72, respectively, p < 0.05, n = 234). Turbidity was significantly higher at the WN transects (p < 0.001, n = 233), but it tended to increase throughout the sampling season within and outside the FB. E. coli in adjacent foreshore sand was significantly lower at the WN transects. A combination of factors might explain higher E. coli and turbidity within the FB including increased sediment resuspension, trapped algae, shallowing within the FB, and large lake hydrodynamic processes. This remediation approach may find better use in a different hydrodynamic setting, but the results of this experiment provide insight on sources of contamination and nearshore dynamics that may direct future beach management strategies.

Are temperate mature forests buffered from invasive lianas?

USGS Publications Warehouse

Pavlovic, Noel B.; Leicht-Young, Stacey A.

2011-01-01

Mature and old-growth forests are often thought to be buffered against invasive species due to low levels of light and infrequent disturbance. Lianas (woody vines) and other climbing plants are also known to exhibit lower densities in older forests. As part of a larger survey of the lianas of the southern Lake Michigan region in mature and old-growth forests, the level of infestation by invasive lianas was evaluated. The only invasive liana detected in these surveys was Celastrus orbiculatus Thunb. (Celastraceae). Although this species had only attached to trees and reached the canopy in a few instances, it was present in 30% of transects surveyed, mostly as a component of the ground layer. Transects with C. orbiculatus had higher levels of soil potassium and higher liana richness than transects without. In contrast, transects with the native C. scandens had higher pH, sand content, and soil magnesium and lower organic matter compared to transects where it was absent. Celastrus orbiculatus appears to be a generalist liana since it often occurs with native lianas. Celastrus orbiculatus poses a substantial threat to mature forests as it will persist in the understory until a canopy gap or other disturbance provides the light and supports necessary for it to ascend to the canopy and damage tree species. As a result, these forests should be monitored by land managers so that C. orbiculatus eradication can occur while invasions are at low densities and restricted to the ground layer.

Hydrographic Variability off the Coast of Oman

NASA Astrophysics Data System (ADS)

Belabbassi, L.; Dimarco, S. F.; Jochens, A. E.; Al Gheilani, H.; Wang, Z.

2010-12-01

Data from hydrographic transects made in 2001 and 2002 and between 2007 and 2009 were obtained from the Oman Ministry of Fisheries Wealth. Property-depth plots of temperature, salinity, and dissolved oxygen were produced for all transects and in all months for which data were available. These were analyzed for temporal and spatial variability. For all transects, there exist large variability on various timescales, with strong spatial variability. Two common features that are seen in the hydrographic data sets are the Persian Gulf Water (PGW) and a layer of continuous low oxygen concentrations in the lower part of the water column. Plots of salinity produced for transects located in the northern part of the Gulf of Oman show a one-unit increase in salinity of the water at the bottom of deepest station during the months of August and September as compared to the other months. Similarly, cross-shelf contour plots of temperature shows an increase in water temperature near the bottom station during the months of August and September. These indicate the presence of the PGW outflow in the northern part of the Gulf of Oman. For dissolved oxygen distributions, hydrographic transects that did not extend far offshore show monthly differences in the presence of water with low oxygen concentrations. For transects that do extend far offshore and also show a layer of low oxygen water throughout the year, there is generally a monthly difference on whether this water is found close to the surface or deeper in the water column. The variability seen in the data could only be explained by comparing these data to data collected from the real time cable ocean observing system installed by Lighthouse R &D Enterprise in the Oman Sea and the Arabian Sea in 2005. The analysis of these data reveal that the variability observed is related to processes such as ocean conditions, monsoonal cycle, and extreme weather events.

Characterizing the Phylogenetic Tree Community Structure of a Protected Tropical Rain Forest Area in Cameroon

PubMed Central

Munoz, François; Couteron, Pierre; Hardy, Olivier J.; Sonké, Bonaventure

2014-01-01

Tropical rain forests, the richest terrestrial ecosystems in biodiversity on Earth are highly threatened by global changes. This paper aims to infer the mechanisms governing species tree assemblages by characterizing the phylogenetic structure of a tropical rain forest in a protected area of the Congo Basin, the Dja Faunal Reserve (Cameroon). We re-analyzed a dataset of 11538 individuals belonging to 372 taxa found along nine transects spanning five habitat types. We generated a dated phylogenetic tree including all sampled taxa to partition the phylogenetic diversity of the nine transects into alpha and beta components at the level of the transects and of the habitat types. The variation in phylogenetic composition among transects did not deviate from a random pattern at the scale of the Dja Faunal Reserve, probably due to a common history and weak environmental variation across the park. This lack of phylogenetic structure combined with an isolation-by-distance pattern of taxonomic diversity suggests that neutral dispersal limitation is a major driver of community assembly in the Dja. To assess any lack of sensitivity to the variation in habitat types, we restricted the analyses of transects to the terra firme primary forest and found results consistent with those of the whole dataset at the level of the transects. Additionally to previous analyses, we detected a weak but significant phylogenetic turnover among habitat types, suggesting that species sort in varying environments, even though it is not predominating on the overall phylogenetic structure. Finer analyses of clades indicated a signal of clustering for species from the Annonaceae family, while species from the Apocynaceae family indicated overdispersion. These results can contribute to the conservation of the park by improving our understanding of the processes dictating community assembly in these hyperdiverse but threatened regions of the world. PMID:24936786

Evaluating the effects of check dams on channel geometry, bed sediment size and riparian vegetation in Mediterranean mountain torrents.

PubMed

Zema, Demetrio Antonio; Bombino, Giuseppe; Denisi, Pietro; Lucas-Borja, Manuel Esteban; Zimbone, Santo Marcello

2018-06-12

In mountain streams possible negative impacts of check dams on soil, water and riparian vegetation due to check dam installation can be noticed. In spite of the ample literature on the qualitative effects of engineering works on channel hydrology, morphology, sedimentary effects and riparian vegetation characteristics, quantitative evaluations of the changes induced by check dams on headwater characteristics are rare. In order to fill this gap, this study has evaluated the effects of check dams located in headwaters of Calabria (Southern Italy) on hydrological and geomorphological processes and on the response of riparian vegetation to these actions. The analysis has compared physical and vegetation indicators in transects identified around check dams (upstream and downstream) and far from their direct influence (control transects). Check dams were found to influence significantly unit discharge, surface and subsurface sediments (both upstream and downstream), channel shape and transverse distribution of riparian vegetation (upstream) as well as cover and structure of riparian complexes (downstream). The actions of the structures on torrent longitudinal slope and biodiversity of vegetation were less significant. The differences on bed profile slope were significant only between upstream and downstream transects. The results of the Agglomerative Hierarchical Cluster analysis confirmed the substantial similarity between upstream and control transects, thus highlighting that the construction of check dams, needed to mitigate the hydro-geological risks, has not strongly influenced the torrent functioning and ecology before check dam construction. Moreover, simple and quantitative linkages between torrent hydraulics, geomorphology and vegetation characteristics exist in the analysed headwaters; these relationships among physical adjustments of channels and most of the resulting characteristics of the riparian vegetation are specific for the transect locations with respect of check dams. Conversely, the biodiversity of the riparian vegetation basically eludes any quantitative relations with the physical and other vegetal characteristics of the torrent transects. Copyright © 2018 Elsevier B.V. All rights reserved.

The role of the superior laryngeal nerve in esophageal reflexes

PubMed Central

Medda, B. K.; Jadcherla, S.; Shaker, R.

2012-01-01

The aim of this study was to determine the role of the superior laryngeal nerve (SLN) in the following esophageal reflexes: esophago-upper esophageal sphincter (UES) contractile reflex (EUCR), esophago-lower esophageal sphincter (LES) relaxation reflex (ELIR), secondary peristalsis, pharyngeal swallowing, and belch. Cats (N = 43) were decerebrated and instrumented to record EMG of the cricopharyngeus, thyrohyoideus, geniohyoideus, and cricothyroideus; esophageal pressure; and motility of LES. Reflexes were activated by stimulation of the esophagus via slow balloon or rapid air distension at 1 to 16 cm distal to the UES. Slow balloon distension consistently activated EUCR and ELIR from all areas of the esophagus, but the distal esophagus was more sensitive than the proximal esophagus. Transection of SLN or proximal recurrent laryngeal nerves (RLN) blocked EUCR and ELIR generated from the cervical esophagus. Distal RLN transection blocked EUCR from the distal cervical esophagus. Slow distension of all areas of the esophagus except the most proximal few centimeters activated secondary peristalsis, and SLN transection had no effect on secondary peristalsis. Slow distension of all areas of the esophagus inconsistently activated pharyngeal swallows, and SLN transection blocked generation of pharyngeal swallows from all levels of the esophagus. Slow distension of the esophagus inconsistently activated belching, but rapid air distension consistently activated belching from all areas of the esophagus. SLN transection did not block initiation of belch but blocked one aspect of belch, i.e., inhibition of cricopharyngeus EMG. Vagotomy blocked all aspects of belch generated from all areas of esophagus and blocked all responses of all reflexes not blocked by SLN or RLN transection. In conclusion, the SLN mediates all aspects of the pharyngeal swallow, no portion of the secondary peristalsis, and the EUCR and ELIR generated from the proximal esophagus. Considering that SLN is not a motor nerve for any of these reflexes, the role of the SLN in control of these reflexes is sensory in nature only. PMID:22403790

Organization, development, and effects of infraorbital nerve transection on galanin binding sites in the trigeminal brainstem complex.

PubMed

Bodie, D; Bennett-Clarke, C A; Davis, K; Postelwaite, J P; Chiaia, N L; Rhoades, R W

1997-01-01

Previous experiments from this laboratory have indicated that transection of the infraorbital nerve (ION, the trigeminal [V] branch that supplies the mystacial vibrissae follicles) at birth and in adulthood has markedly different effects on galanin immunoreactivity in the V brainstem complex. Adult nerve transection increases galanin immunoreactivity in the superficial layers of V subnucleus caudalis (SpC) only, while neonatal nerve transection results in increased galanin expression in vibrissae-related primary afferents throughout the V brainstem complex. The present study describes the distribution of binding sites for this peptide in the mature and developing V ganglion and brainstem complex and determines the effects of neonatal and adult ION damage and the associated changes in galanin levels upon their distribution and density. Galanin binding sites are densely distributed in all V brainstem subnuclei and are particularly dense in V subnucleus interpolaris and the superficial layers of SpC. They are present at birth (P-0) and their distribution is similar to that in adult animals. Transection of the ION in adulthood and examination of brainstem 7 days later indicated marked reductions in the density of galanin binding sites in the V brainstem complex. With the exception of the superficial laminae of SpC, the same reduction in density remained apparent in rats that survived > 45 days after nerve cuts. Transection of the ION on P-0 resulted in no change in the density of galanin binding sites in the brainstem after either 7 or > 60 days survival. These results indicate that densely distributed galanin binding sites are present in the V brainstem complex of both neonatal and adult rats, that they are located in regions not innervated by galanin-positive axons, and that their density is not significantly influenced by large lesion-induced changes in the primary afferent content of their natural ligand.

Trace metals in the Ob and Yenisei Rivers' Estuaries (the Kara Sea).

NASA Astrophysics Data System (ADS)

Demina, L. L.

2014-12-01

Behavior of some trace metals (Al, As, Cd, Co, Cr, Cu, Fe, Mn, Ni and Pb) in water column (soluble <0.45 µm and particulate fractions) and bottom sediments (surface and cores) along the two transects from the Ob River and Yenisei River Estuaries to the Kara Sea was studied. The length of both transects was about 700 km. Water depth was 12-63 m, O2 dissolved :5.36-9.55 ml l-1. Along the transects salinity increased from 0.07 to 34.2 psu, while the SPM' concentration decreased from 10.31 to 0.31 mg/l. Total suspended particulate matter load is more than one order of magnitude higher in the Ob River Estuary comparing to that of the Yenisei River. It has led to a significant difference between the suspended trace metals' concentrations (µg/l) in water of the two estuaries. With salinity increase along transects Fe susp., Mn susp. and Zn susp. decreased by a factor of 100-500, that has led to a growth of a relative portion of dissolved trace metals followed by their bioaccumulation (Demina et al., 2010). A strong direct correlation between suspended Cu, Fe and SPM mass concentration was found. For the first time along the Yenisei River' Estuary -the Kara Sea transect a direct positive correlation between Cu suspended and volume concentration of SPM (mg/ml3) was found, that was attributed to contribution of phytoplankton aggregates in the SPM composition. A trend of relationship between content of suspended As and pelitic fraction (2-10 µm) of SPM was firstly found in theses basins also. Study of trace metal speciation in the bottom sediments (adsorbed, associated with Fe-Mn (oxyhydr)oxides, organic matter and fixed in the mineral lattice or refractory) has revealed the refractory fraction to be prevailing (70-95% total content) for Fe, Zn, Cu, Co, Ni, Cr, Cd and Pb. That means that toxic heavy metals were not available for bottom fauna. Mn was predominantly found in the adsorbed and (oxyhydr)oxides geochemically labile forms, reflecting the redox condition change along both transects and within the sedimentary cores. References. Demina L.L., Gordeev V.V., Galkin S.V., Kravchishina M.D. Biogeochemistry of some heavy metals and metalloids along the transect the Ob River Estuary - the Kara Sea. Oceanology, 2010, vo. 50, No 5, pp. 729- 742.

Continental-scale patterns in soil geochemistry and mineralogy: results from two transects across the United States and Canada

USGS Publications Warehouse

Woodruff, L.G.; Cannon, W.F.; Eberl, D.D.; Smith, D.B.; Kilburn, J.E.; Horton, J.D.; Garrett, R.G.; Klassen, R.A.

2009-01-01

In 2004, the US Geological Survey (USGS) and the Geological Survey of Canada (GSC) initiated a pilot study that involved collection of more than 1500 soil samples from 221 sites along two continental transects across Canada and the United States. The pilot study was designed to test and refine protocols for a soil geochemical survey of North America. The two transects crossed a wide array of soil parent materials, soil ages, climatic conditions, landforms, land covers and land uses. Sample sites were selected randomly at approximately 40-km intervals from a population defined as all soils of the continent. At each site, soils representing 0 to 5 cm depth, and the O, A, and C horizons, if present, were collected and analyzed for their near-total content of over 40 major and trace elements. Soils from 0–5 cm depth were also collected for analysis of organic compounds. Results from the transects confirm that soil samples collected at a 40-km spacing reveal coherent, continental- to subcontinental-scale geochemical and mineralogical patterns that can be correlated to aspects of underlying soil parent material, soil age and climate influence. The geochemical data also demonstrate that at the continental-scale the dominance of any of these major factors that control soil geochemistry can change across the landscape. Along both transects, soil mineralogy and geochemistry change abruptly with changes in soil parent materials. However, the chemical influence of a soil’s parent material can be obscured by changing climatic conditions. For the transects, increasing precipitation from west to east and increasing temperature from north to south affect both soil mineralogy and geochemistry because of climate effects on soil weathering and leaching, and plant productivity. Regional anomalous metal concentrations can be linked to natural variations in soil parent materials, such as high Ni and Cr in soils developed on ultramafic rocks in California or high P in soils formed on weathered Ordovician limestones in central Kentucky. On local scales, anomalous metal concentrations recognized in soil profiles, such as high P in soils from animal confinement sites, are consistent with local anthropogenic disturbances. At a larger scale, the distribution of Hg across the west to east transect demonstrates that it can be difficult to distinguish between natural or anthropogenic contributions and that many factors can contribute to an element’s spatial distribution. Only three samples in a subset of seventy-three 0–5 cm depth soil samples from the north to south transect had organochlorine pesticides values above the method detection limit, apparently related to historic usage of the pesticides DDT and dieldrin.

Olfactory Ensheathing Cell Transplantation after a Complete Spinal Cord Transection Mediates Neuroprotective and Immunomodulatory Mechanisms to Facilitate Regeneration

PubMed Central

Khankan, Rana R.; Griffis, Khris G.; Haggerty-Skeans, James R.; Zhong, Hui; Roy, Roland R.; Edgerton, V. Reggie

2016-01-01

Multiple neural and peripheral cell types rapidly respond to tissue damage after spinal cord injury to form a structurally and chemically inhibitory scar that limits axon regeneration. Astrocytes form an astroglial scar and produce chondroitin sulfate proteoglycans (CSPGs), activate microglia, and recruit blood-derived immune cells to the lesion for debris removal. One beneficial therapy, olfactory ensheathing cell (OEC) transplantation, results in functional improvements and promotes axon regeneration after spinal cord injury. The lack of an OEC-specific marker, however, has limited the investigation of mechanisms underlying their proregenerative effects. We compared the effects of enhanced green fluorescent protein-labeled fibroblast (FB) and OEC transplants acutely after a complete low-thoracic spinal cord transection in adult rats. We assessed the preservation of neurons and serotonergic axons, the levels of inhibitory CSPGs and myelin debris, and the extent of immune cell activation between 1 and 8 weeks postinjury. Our findings indicate that OECs survive longer than FBs post-transplantation, preserve axons and neurons, and reduce inhibitory molecules in the lesion core. Additionally, we show that OECs limit immune-cell activation and infiltration, whereas FBs alter astroglial scar formation and increase immune-cell infiltration and concomitant secondary tissue damage. Administration of cyclosporine-A to enhance graft survival demonstrated that immune suppression can augment OEC contact-mediated protection of axons and neurons during the first 2 weeks postinjury. Collectively, these data suggest that OECs have neuroprotective and immunomodulatory mechanisms that create a supportive environment for neuronal survival and axon regeneration after spinal cord injury. SIGNIFICANCE STATEMENT Spinal cord injury creates physical and chemical barriers to axon regeneration. We used a complete spinal cord transection model and olfactory ensheathing cell (OEC) or fibroblast (FB; control) transplantation as a repair strategy. OECs, but not FBs, intermingled with astrocytes, facilitated astroglial scar border formation and sequestered invading peripheral cells. OECs attenuated immune cell infiltration, reduced secondary tissue damage, protected neurons and axons in the lesion core, and helped clear myelin debris. Immunosuppression enhanced survival of OECs and FBs, but only OEC transplantation promoted scaffold formation in the lesion site that facilitated axon regeneration and neuron preservation. PMID:27277804

Groundwater-Surface Water Interactions and Downstream Transport of Water, Heat, and Solutes in a Hydropeaked River

NASA Astrophysics Data System (ADS)

Ferencz, S. B.; Cardenas, M. B.; Neilson, B. T.; Watson, J.

2017-12-01

A majority of the world's largest river systems are regulated by dams. In addition to being used for water resources management and flood prevention, many large dams are also used for hydroelectric power generation. In the United States, dams account for 7% of domestic electricity, and hydropower accounts for 16% of worldwide electricity production. To help meet electricity demand during peak usage times, hydropower utilities often increase their releases of water during high demand periods. This practice, termed hydropeaking, can cause large transient flow regimes downstream of hydroelectric dams. These transient flow increases can result in order of magnitude daily fluctuations in discharge, and the released water can have different thermal and chemical properties than ambient river water. As hydropeaking releases travel downstream, the temporary rise in stage and increase in discharge can enhance surface water-groundwater (SW-GW) exchange between the river and its alluvial aquifer. This dam-induced SW-GW exchange, combined with hydrodynamic attenuation and heat exchange processes, result in complex responses downstream. The dam-regulated Lower Colorado River downstream of Austin, TX was used as a natural laboratory to observe SW-GW interactions and downstream transport of water, heat, and solutes under hydropeaking conditions. To characterize SW-GW interactions, well transects were installed in the banks of the river to observe exchanges between the river and alluvial aquifer. The well transects were installed at three different distances from the dam (15km, 35km, and 80km). At each well transect conductivity, temperature, and pressure sensors were deployed in the monitoring wells and in the channel. Additional conductivity and temperature sensors were deployed along the study reach to provide a more detailed record of heat and solute transport during hydropeaking releases. The field data spans over two months of daily dam releases that were punctuated by two large natural storm events. To our knowledge, this study is the first to use multiple downstream field sites to characterize how dam-induced SW-GW interactions and in-stream temperature and solute transport behave under hydropeaking conditions.

Downed woody material in southeast Alaska forest stands.

Treesearch

Frederic R. Larson

1992-01-01

Data collected in conjunction with the multiresource inventory of southeast Alaska in 1985-86 included downed wood along 234 transects at 60 locations. Transects occurred in 11 forest types and 19 plant associations within the entire southeastern Alaska archipelago. Downed wood weights in forest types ranged from 1232 kilograms per hectare (0.6 ton per acre) in muskeg...

The densiometer for measurement of crown intercept above a line transect.

Treesearch

J. Edward Dealy

1960-01-01

An adaptation in the use of Lemmon's spherical densiometer, has been developed to measure low overstory crown foliage as intercept above a line transect. This adaptation provides added information for the evaluation of ecological relationships within and among plant communities where some species are too low for overstory density estimates and too high for direct...

Roads as edges: Effects on birds in forested landscapes

Treesearch

Yvette K. Ortega; David E. Capen

2002-01-01

Numerous studies have documented that forest edges affect habitat use and reproductive success of forest birds, but few studies have considered edges created by narrow breaks in the forest canopy. We compared predation rates on artificial nests placed within forest habitat along edge transects, 10 m from unpaved roads, and along interior transects, 300 m from forest-...

Status Report of Environmental Evaluations Trinity River Project Texas. Appendix B. Biological Inventory with Effect Evaluation

DTIC Science & Technology

1975-06-01

wet depressions and sloughs present on the floodplain; heavy black clay soil ; no Spanish moss. Transect No. 4 Location: Henderson County, Bruce Smith...cattle except when too wet; sticky black clay soil ; the transect parallels the river for most of its length, touching the bank at one point. Transect No. 5...4 414 4 4-4. ’ 41-M na USC CA’ 0 nS : N41~ rmO O n4o 1 0’O 1* CC M 0 0a V)S Lj LA LJ USL . a) W WUS >5 0 C) i C n -0- ’D ’A a) __ fig- C tn ’a 0 O

Neonatal transection of the corpus callosum affects paw preference lateralization of adult Swiss mice.

PubMed

Manhães, Alex C; Krahe, Thomas E; Caparelli-Dáquer, Egas; Ribeiro-Carvalho, Anderson; Schmidt, Sergio L; Filgueiras, Cláudio C

2003-09-11

In the present work, the hypothesis that the ontogenetic development of the corpus callosum (CC) affects the establishment of behavioral lateralization was tested by studying paw preference performance in adult Swiss mice that were subjected to mid-sagittal transection of the CC on the first postnatal day. Magnitude and direction of laterality were evaluated independently. No significant differences between groups were found for the magnitude of paw preference. On the other hand, the transected group presented a significant populational bias favoring the left paw that was not present in the control groups. These results lend support to the hypothesis that the development of the CC plays a role in the establishment of the normal pattern of behavioral lateralization.

Design tradeoffs in long-term research for stream salamanders

USGS Publications Warehouse

Brand, Adrianne B,; Grant, Evan H. Campbell

2017-01-01

Long-term research programs can benefit from early and periodic evaluation of their ability to meet stated objectives. In particular, consideration of the spatial allocation of effort is key. We sampled 4 species of stream salamanders intensively for 2 years (2010–2011) in the Chesapeake and Ohio Canal National Historical Park, Maryland, USA to evaluate alternative distributions of sampling locations within stream networks, and then evaluated via simulation the ability of multiple survey designs to detect declines in occupancy and to estimate dynamic parameters (colonization, extinction) over 5 years for 2 species. We expected that fine-scale microhabitat variables (e.g., cobble, detritus) would be the strongest determinants of occupancy for each of the 4 species; however, we found greater support for all species for models including variables describing position within the stream network, stream size, or stream microhabitat. A monitoring design focused on headwater sections had greater power to detect changes in occupancy and the dynamic parameters in each of 3 scenarios for the dusky salamander (Desmognathus fuscus) and red salamander (Pseudotriton ruber). Results for transect length were more variable, but across all species and scenarios, 25-m transects are most suitable as a balance between maximizing detection probability and describing colonization and extinction. These results inform sampling design and provide a general framework for setting appropriate goals, effort, and duration in the initial planning stages of research programs on stream salamanders in the eastern United States.

Adaptive population divergence and directional gene flow across steep elevational gradients in a climate‐sensitive mammal

USGS Publications Warehouse

Waterhouse, Matthew D.; Erb, Liesl P.; Beever, Erik; Russello, Michael A.

2018-01-01

The American pika is a thermally sensitive, alpine lagomorph species. Recent climate-associated population extirpations and genetic signatures of reduced population sizes range-wide indicate the viability of this species is sensitive to climate change. To test for potential adaptive responses to climate stress, we sampled pikas along two elevational gradients (each ~470 to 1640 m) and employed three outlier detection methods, BAYESCAN, LFMM, and BAYPASS, to scan for genotype-environment associations in samples genotyped at 30,763 SNP loci. We resolved 173 loci with robust evidence of natural selection detected by either two independent analyses or replicated in both transects. A BLASTN search of these outlier loci revealed several genes associated with metabolic function and oxygen transport, indicating natural selection from thermal stress and hypoxia. We also found evidence of directional gene flow primarily downslope from large high-elevation populations and reduced gene flow at outlier loci, a pattern suggesting potential impediments to the upward elevational movement of adaptive alleles in response to contemporary climate change. Finally, we documented evidence of reduced genetic diversity associated the south-facing transect and an increase in corticosterone stress levels associated with inbreeding. This study suggests the American pika is already undergoing climate-associated natural selection at multiple genomic regions. Further analysis is needed to determine if the rate of climate adaptation in the American pika and other thermally sensitive species will be able to keep pace with rapidly changing climate conditions.

Characterising the metamorphic discontinuity across the Main Central Thrust Zone of eastern-central Nepal

NASA Astrophysics Data System (ADS)

Wang, Jiamin; Zhang, Jinjiang; Wei, Chunjing; Rai, SantaMan; Wang, Meng; Qian, Jiahui

2015-04-01

The Main Central Thrust Zone (MCTZ) is a top-to-south shear zone that has exhumed the high-grade Himalayan metamorphic core during the orogeny. Identifying the location of the MCTZ is a major challenge and the characteristics of the metamorphic discontinuity remain under debate. To clarify this issue, petrologic and thermobarometric studies were carried out on metapelites and metapsammites that were collected from the basal Nyalam transect in eastern-central Nepal. Results reveal that the metamorphic discontinuity across the MCTZ is characterised by a continuous increase in peak P-T conditions toward higher structural levels, a relatively high field temperature gradient (25-50 °C km-1) and different types of P-T paths. Specifically, representative rocks in the MCTZ record sub-solidus peak conditions (637 ± 16 °C and 9.2 ± 1.0 kbar) and a hairpin-type P-T path. The lower GHC rocks record supra-solidus peak conditions (690 ± 32 °C and 10.3 + 1.1/-1.4 kbar) and a prograde loading path with a small segment of decompression. The presence of a high field pressure gradient across the MCTZ is debatable in the Nyalam transect due to the large uncertainties in pressure estimates. Comparison between obtained P-T results and model predictions indicates that a multiple thrusting process dominated exhumation of the MCTZ and lower GHC rocks, while crustal flow contributed partly to exhumation of the lower GHC rocks.

The Digital Shoreline Analysis System (DSAS) Version 4.0 - An ArcGIS extension for calculating shoreline change

USGS Publications Warehouse

Thieler, E. Robert; Himmelstoss, Emily A.; Zichichi, Jessica L.; Ergul, Ayhan

2009-01-01

The Digital Shoreline Analysis System (DSAS) version 4.0 is a software extension to ESRI ArcGIS v.9.2 and above that enables a user to calculate shoreline rate-of-change statistics from multiple historic shoreline positions. A user-friendly interface of simple buttons and menus guides the user through the major steps of shoreline change analysis. Components of the extension and user guide include (1) instruction on the proper way to define a reference baseline for measurements, (2) automated and manual generation of measurement transects and metadata based on user-specified parameters, and (3) output of calculated rates of shoreline change and other statistical information. DSAS computes shoreline rates of change using four different methods: (1) endpoint rate, (2) simple linear regression, (3) weighted linear regression, and (4) least median of squares. The standard error, correlation coefficient, and confidence interval are also computed for the simple and weighted linear-regression methods. The results of all rate calculations are output to a table that can be linked to the transect file by a common attribute field. DSAS is intended to facilitate the shoreline change-calculation process and to provide rate-of-change information and the statistical data necessary to establish the reliability of the calculated results. The software is also suitable for any generic application that calculates positional change over time, such as assessing rates of change of glacier limits in sequential aerial photos, river edge boundaries, land-cover changes, and so on.

Lead isotopes in lichen transplants around a Cu smelter in Russia determined by MC-ICP-MS reveal transient records of multiple sources.

PubMed

Spiro, B; Weiss, D J; Purvis, O W; Mikhailova, I; Williamson, B J; Coles, B J; Udachin, V

2004-12-15

Transplants of the lichen Hypogymnia physodes, which is relatively tolerant to SO2 and heavy metals, were deployed for 3 months over a 60 km long SW-NE transect centered on a highly polluting Cu smelter and its adjoining town of Karabash, southern Urals, Russia. The abundance of 206Pb, 207Pb, 208Pb, and 204Pb were determined by MC-ICP-MS. The measurement of 204Pb revealed critical features, which would otherwise remain concealed: (i) The precise isotope ratios referenced to 204Pb allowed several different sources to be resolved even within the small area covered: (a) the obvious pollutant source of the Karabash Cu smelter; (b) two dispersed sources, likely to include soil with lower and different contributions of thorogenic and uranogenic lead; and (c) one anthropogenic source with higher contribution of 235U derived Pb. (ii) In part of the transect, the Pb isotope composition changed while the Pb concentrations remained the same. This indicates that the Pb content of the transplantation material from the background site was largely replaced and that the transplants provide a transient record reflecting a continuous accumulation and loss of environmental Pb, probably mainly in the form of extracellular particles. Overall, the method of lichen transplantation coupled with Pb isotope ratio determinations proved effective in assessing the usefulness of lichens in biomonitoring and in resolving different sources of atmospheric deposition.

ATLANTIC BIRDS: a data set of bird species from the Brazilian Atlantic Forest.

PubMed

Hasui, Érica; Metzger, Jean Paul; Pimentel, Rafael G; Silveira, Luís Fábio; Bovo, Alex A D A; Martensen, Alexandre C; Uezu, Alexandre; Regolin, André L; Bispo de Oliveira, Arthur Â; Gatto, Cassiano A F R; Duca, Charles; Andretti, Christian B; Banks-Leite, Cristina; Luz, Daniela; Mariz, Daniele; Alexandrino, Eduardo R; de Barros, Fabio M; Martello, Felipe; Pereira, Iolanda M D S; da Silva, José N; Ferraz, Katia M P M D B; Naka, Luciano N; Dos Anjos, Luiz; Efe, Márcio A; Pizo, Marco Aurélio; Pichorim, Mauro; Gonçalves, Maycon Sanyvan S; Cordeiro, Paulo Henrique Chaves; Dias, Rafael A; Muylaert, Renata D L; Rodrigues, Rodolpho C; da Costa, Thiago V V; Cavarzere, Vagner; Tonetti, Vinicius R; Silva, Wesley R; Jenkins, Clinton N; Galetti, Mauro; Ribeiro, Milton C

2018-02-01

South America holds 30% of the world's avifauna, with the Atlantic Forest representing one of the richest regions of the Neotropics. Here we have compiled a data set on Brazilian Atlantic Forest bird occurrence (150,423) and abundance samples (N = 832 bird species; 33,119 bird individuals) using multiple methods, including qualitative surveys, mist nets, point counts, and line transects). We used four main sources of data: museum collections, on-line databases, literature sources, and unpublished reports. The data set comprises 4,122 localities and data from 1815 to 2017. Most studies were conducted in the Florestas de Interior (1,510 localities) and Serra do Mar (1,280 localities) biogeographic sub-regions. Considering the three main quantitative methods (mist net, point count, and line transect), we compiled abundance data for 745 species in 576 communities. In the data set, the most frequent species were Basileuterus culicivorus, Cyclaris gujanensis, and Conophaga lineata. There were 71 singletons, such as Lipaugus conditus and Calyptura cristata. We suggest that this small number of records reinforces the critical situation of these taxa in the Atlantic Forest. The information provided in this data set can be used for macroecological studies and to foster conservation strategies in this biodiversity hotspot. No copyright restrictions are associated with the data set. Please cite this Data Paper if data are used in publications and teaching events. © 2017 by the Ecological Society of America.

A survey of the occurrence of Bacillus anthracis in North American soils over two long-range transects and within post-Katrina New Orleans

USGS Publications Warehouse

Griffin, Dale W.; Petrosky, Terry; Morman, Suzette A.; Luna, Vicki A.

2009-01-01

Soil samples were collected along a north-south transect extending from Manitoba, Canada, to the US-Mexico border near El Paso, Texas in 2004 (104 samples), a group of sites within New Orleans, Louisiana following Hurricane Katrina in 2005 (19 samples), and a Gulf Coast transect extending from Sulphur, Louisiana, to DeFuniak Springs, Florida, in 2007 (38 samples). Samples were collected from the top 40 cm of soil and were screened for the presence of total Bacillus species and Bacillus anthracis (anthrax), specifically using multiplex-polymerase chain reaction (PCR). Using an assay with a sensitivity of ~170 equivalent colony-forming units (CFU) g-1 field moist soil, the prevalence rate of Bacillus sp./B. anthracis in the north-south transect and the 2005 New Orleans post-Katrina sample set were 20/5% and 26/26%, respectively. Prevalence in the 2007 Gulf Coast sample set using an assay with a sensitivity of ~4 CFU g-1 of soil was 63/0%. Individual transect-set data indicate a positive relation between occurrences of species and soil moisture or soil constituents (i.e., Zn and Cu content). The 2005 New Orleans post-Katrina data indicated that B. anthracis is readily detectable in Gulf Coast soils following flood events. The data also indicated that occurrence, as it relates to soil chemistry, may be confounded by flood-induced dissemination of germinated cells and the mixing of soil constituents for short temporal periods following an event.

A survey of the occurrence of Bacillus anthracis in North American soils over two long-range transects and within post-Katrina New Orleans

USGS Publications Warehouse

Griffin, Dale W.; Petrosky, T.; Morman, S.A.; Luna, V.A.

2009-01-01

Soil samples were collected along a north-south transect extending from Manitoba, Canada, to the US-Mexico border near El Paso, Texas in 2004 (104 samples), a group of sites within New Orleans, Louisiana following Hurricane Katrina in 2005 (19 samples), and a Gulf Coast transect extending from Sulphur, Louisiana, to DeFuniak Springs, Florida, in 2007 (38 samples). Samples were collected from the top 40 cm of soil and were screened for the presence of total Bacillus species and Bacillus anthracis (anthrax), specifically using multiplex-polymerase chain reaction (PCR). Using an assay with a sensitivity of ???170 equivalent colony-forming units (CFU) g-1 field moist soil, the prevalence rate of Bacillus sp./B. anthracis in the north-south transect and the 2005 New Orleans post-Katrina sample set were 20/5% and 26/26%, respectively. Prevalence in the 2007 Gulf Coast sample set using an assay with a sensitivity of ???4 CFU g-1 of soil was 63/0%. Individual transect-set data indicate a positive relation between occurrences of species and soil moisture or soil constituents (i.e., Zn and Cu content). The 2005 New Orleans post-Katrina data indicated that B. anthracis is readily detectable in Gulf Coast soils following flood events. The data also indicated that occurrence, as it relates to soil chemistry, may be confounded by flood-induced dissemination of germinated cells and the mixing of soil constituents for short temporal periods following an event.

Elevational Ranges of Montane Birds and Deforestation in the Western Andes of Colombia.

PubMed

Ocampo-Peñuela, Natalia; Pimm, Stuart L

2015-01-01

Deforestation causes habitat loss, fragmentation, degradation, and can ultimately cause extinction of the remnant species. Tropical montane birds face these threats with the added natural vulnerability of narrower elevational ranges and higher specialization than lowland species. Recent studies assess the impact of present and future global climate change on species' ranges, but only a few of these evaluate the potentially confounding effect of lowland deforestation on species elevational distributions. In the Western Andes of Colombia, an important biodiversity hotspot, we evaluated the effects of deforestation on the elevational ranges of montane birds along altitudinal transects. Using point counts and mist-nets, we surveyed six altitudinal transects spanning 2200 to 2800 m. Three transects were forested from 2200 to 2800 m, and three were partially deforested with forest cover only above 2400 m. We compared abundance-weighted mean elevation, minimum elevation, and elevational range width. In addition to analysing the effect of deforestation on 134 species, we tested its impact within trophic guilds and habitat preference groups. Abundance-weighted mean and minimum elevations were not significantly different between forested and partially deforested transects. Range width was marginally different: as expected, ranges were larger in forested transects. Species in different trophic guilds and habitat preference categories showed different trends. These results suggest that deforestation may affect species' elevational ranges, even within the forest that remains. Climate change will likely exacerbate harmful impacts of deforestation on species' elevational distributions. Future conservation strategies need to account for this by protecting connected forest tracts across a wide range of elevations.

Central vs. peripheral neuraxial sympathetic control of porcine ventricular electrophysiology

PubMed Central

Yamakawa, Kentaro; Howard-Quijano, Kimberly; Zhou, Wei; Rajendran, Pradeep; Yagishita, Daigo; Vaseghi, Marmar; Ajijola, Olujimi A.; Armour, J. Andrew; Shivkumar, Kalyanam; Ardell, Jeffrey L.

2015-01-01

Sympathoexcitation is associated with ventricular arrhythmogenesis. The aim of this study was to determine the role of thoracic dorsal root afferent neural inputs to the spinal cord in modulating ventricular sympathetic control of normal heart electrophysiology. We hypothesize that dorsal root afferent input tonically modulates basal and evoked efferent sympathetic control of the heart. A 56-electrode sock placed on the epicardial ventricle in anesthetized Yorkshire pigs (n = 17) recorded electrophysiological function, as well as activation recovery interval (ARI) and dispersion in ARI, at baseline conditions and during stellate ganglion electrical stimulation. Measures were compared between intact states and sequential unilateral T1–T4 dorsal root transection (DRTx), ipsilateral ventral root transection (VRTx), and contralateral dorsal and ventral root transections (DVRTx). Left or right DRTx decreased global basal ARI [Lt.DRTx: 369 ± 12 to 319 ± 13 ms (P < 0.01) and Rt.DRTx: 388 ± 19 to 356 ± 15 ms (P < 0.01)]. Subsequent unilateral VRTx followed by contralateral DRx+VRTx induced no further change. In intact states, left and right stellate ganglion stimulation shortened ARIs (6 ± 2% vs. 17 ± 3%), while increasing dispersion (+139% vs. +88%). There was no difference in magnitude of ARI or dispersion change with stellate stimulation following spinal root transections. Interruption of thoracic spinal afferent signaling results in enhanced basal cardiac sympathoexcitability without diminishing the sympathetic response to stellate ganglion stimulation. This suggests spinal dorsal root transection releases spinal cord-mediated tonic inhibitory control of efferent sympathetic tone, while maintaining intrathoracic cardiocentric neural networks. PMID:26661096

PAHs and PCBs deposited in surficial sediments along a rural to urban transect in a mid-Atlantic coastal river basin (USA).

PubMed

Foster, Gregory D; Cui, Vickie

2008-10-01

PAHs and PCBs were measured in river sediments along a 226 km longitudinal transect that spanned rural to urban land use settings through Valley and Ridge, Piedmont Plateau and Coastal Plain physiographic provinces in the Potomac River basin (mid-Atlantic USA). A gradient in PAH concentrations was found in river bed sediments along the upstream transect in the Potomac and Shenandoah Rivers that correlated with population densities in the nearby sub-basins. Sediment PAH concentrations halved per each approximately 40 km of transect distance upstream (i.e., the half-concentration distance) from the urban center (Washington, DC) of the Potomac River basin in direct proportion to population density. The PAH molecular composition was consistent across all geologic provinces, revealing a dominant pyrogenic source. Fluoranthene to perylene ratios served as useful markers for urban inputs, with a ratio > 2.4 observed in sediments near urban structures such as roadways, bridges and sewer outfalls. PCBs in sediments were not well correlated with population densities along the river basin transect, but the highest concentrations were found in the urban Coastal Plain region near Washington, DC and in the Shenandoah River near a known industrial Superfund site. PAHs were moderately correlated with sediment total organic carbon (TOC) in the Shenandoah River and Coastal Plain Potomac River regions, but TOC was poorly correlated with PCB concentrations throughout the entire basin. Although both PAHs and PCBs are widely recognized as urban-derived contaminants, their concentration profiles and geochemistry in river sediments were uniquely different throughout the upper Potomac River basin.

Elevational Ranges of Montane Birds and Deforestation in the Western Andes of Colombia

PubMed Central

2015-01-01

Deforestation causes habitat loss, fragmentation, degradation, and can ultimately cause extinction of the remnant species. Tropical montane birds face these threats with the added natural vulnerability of narrower elevational ranges and higher specialization than lowland species. Recent studies assess the impact of present and future global climate change on species’ ranges, but only a few of these evaluate the potentially confounding effect of lowland deforestation on species elevational distributions. In the Western Andes of Colombia, an important biodiversity hotspot, we evaluated the effects of deforestation on the elevational ranges of montane birds along altitudinal transects. Using point counts and mist-nets, we surveyed six altitudinal transects spanning 2200 to 2800m. Three transects were forested from 2200 to 2800m, and three were partially deforested with forest cover only above 2400m. We compared abundance-weighted mean elevation, minimum elevation, and elevational range width. In addition to analysing the effect of deforestation on 134 species, we tested its impact within trophic guilds and habitat preference groups. Abundance-weighted mean and minimum elevations were not significantly different between forested and partially deforested transects. Range width was marginally different: as expected, ranges were larger in forested transects. Species in different trophic guilds and habitat preference categories showed different trends. These results suggest that deforestation may affect species’ elevational ranges, even within the forest that remains. Climate change will likely exacerbate harmful impacts of deforestation on species’ elevational distributions. Future conservation strategies need to account for this by protecting connected forest tracts across a wide range of elevations. PMID:26641477

Quantitative US Elastography Can Be Used to Quantify Mechanical and Histologic Tendon Healing in a Rabbit Model of Achilles Tendon Transection.

PubMed

Yamamoto, Yohei; Yamaguchi, Satoshi; Sasho, Takahisa; Fukawa, Taisuke; Akatsu, Yorikazu; Akagi, Ryuichiro; Yamaguchi, Tadashi; Takahashi, Kenji; Nagashima, Kengo; Takahashi, Kazuhisa

2017-05-01

Purpose To determine the time-dependent change in strain ratios (SRs) at the healing site of an Achilles tendon rupture in a rabbit model of tendon transection and to assess the correlation between SRs and the mechanical and histologic properties of the healing tissue. Materials and Methods Experimental methods were approved by the institutional animal care and use committee. The Achilles tendons of 24 New Zealand white rabbits (48 limbs) were surgically transected. The SRs of Achilles tendons were calculated by using compression-based quantitative ultrasonographic elastography measurements obtained 2, 4, 8, and 12 weeks after transection. After in vivo elastography, the left Achilles tendon was harvested for mechanical testing of ultimate load, ultimate stress, elastic modulus, and linear stiffness, and the right tendons were harvested for tissue histologic analysis with the Bonar scale. Time-dependent changes in SRs, mechanical parameters, and Bonar scale scores were evaluated by using repeated-measures analysis of variance. The correlation between SRs and each measured variable was evaluated by using the Spearman rank correlation coefficient. Results Mean SRs and Bonar scale values decreased as a function of time after transection, whereas mechanical parameters increased (P < .001). SR correlated with ultimate stress (ρ = 0.68, P <.001,) elastic modulus (ρ = 0.74, P <.001), and the Bonar scale (ρ = 0.87, P <.001). Conclusion Quantitative elastography could be a useful method with which to evaluate mechanical and histologic properties of the healing tendon. © RSNA, 2017 Online supplemental material is available for this article.

Influence of northern limit range on genetic diversity and structure in a widespread North American tree, sugar maple (Acer saccharum Marshall).

PubMed

Graignic, Noémie; Tremblay, Francine; Bergeron, Yves

2018-03-01

Due to climate change, the ranges of many North American tree species are expected to shift northward. Sugar maple ( Acer saccharum Marshall) reaches its northern continuous distributional limit in northeastern North America at the transition between boreal mixed-wood and temperate deciduous forests. We hypothesized that marginal fragmented northern populations from the boreal mixed wood would have a distinct pattern of genetic structure and diversity. We analyzed variation at 18 microsatellite loci from 23 populations distributed along three latitudinal transects (west, central, and east) that encompass the continuous-discontinuous species range. Each transect was divided into two zones, continuous (temperate deciduous) and discontinuous (boreal mixed wood), based on sugar maple stand abundance. Respective positive and negative relationships were found between the distance of each population to the northern limit (D_north), and allelic richness ( A R ) and population differentiation ( F ST ). These relations were tested for each transect separately; the pattern (discontinuous-continuous) remained significant only for the western transect. structure analysis revealed the presence of four clusters. The most northern populations of each transect were assigned to a distinct group. Asymmetrical gene flow occurred from the southern into the four northernmost populations. Southern populations in Québec may have originated from two different postglacial migration routes. No evidence was found to validate the hypothesis that northern populations were remnants of a larger population that had migrated further north of the species range after the retreat of the ice sheet. The northernmost sugar maple populations possibly originated from long-distance dispersal.

Rectal transection using a curved cutter stapler with an endo-Satinsky clamp during a laparoscopic low anterior resection.

PubMed

Hotta, Tsukasa; Takifuji, Katsunari; Yokoyama, Shozo; Matsuda, Kenji; Yamaue, Hiroki

2012-10-01

A new rectal transaction method was developed using a combination of the curved cutter stapler and endo-Satinsky clamp because of the difficulty in performing rectal transection in the narrow pelvic cavity. The endo-Satinsky clamp is inserted without a flexible trocar cannula by connecting the handle extra-abdominally with a shaft of the endo-Satinsky clamp through the left higher quadrant port via a retrograde course from a midline incision above the pubis symphysis. The endo-Satinsky clamp is used to clamp the rectal wall horizontally at the distal end of the tumor. The wrist of an elastic surgical glove fixed with the shaft of the curved cutter stapler is covered with a midline incision, and consequently, the stapler is inserted into the pelvic cavity. The curved head of the stapler is rotated to the left at the anal side of the endo-Satinsky clamp to insert the rectum between the jaws of the stapler. The stapler is closed and fired, and a rectal transection is thus performed with one firing using a single cartridge. This method was performed in 12 patients with rectal cancer. The median value and range of the tumor distance from the anal verge were 7.0 and 4.5-11.0 cm, respectively. The median duration of the operation was 252 min, and the median blood loss was 15 mL. Only one stapling cartridge was used for rectal transection in all cases, and no major complications were observed. We herein demonstrated a new transection method for rectal cancer.

Lead transport into Bayou Trepagnier wetlands in Louisiana, USA.

PubMed

Devall, Margaret S; Thien, Leonard B; Ellgaard, Erik; Flowers, George

2006-01-01

Establishment of a petroleum refinery in 1916 near the headwaters of Bayou Trepagnier with subsequent dredging of the bayou resulted in spoil banks containing high levels of Pb. A large swamp abuts the eastern bank of the bayou. Cores were taken from 15 baldcypress [Taxodium distichum (L.) Richard] trees growing in the swamp along a 610-m transect (nine trees) and a 183-m transect (six trees) running perpendicular from the spoil bank. The cores were crossdated, annual rings were measured, and 5-yr segments of the cores were prepared and analyzed for heavy metals. Soil samples were collected along one transect and analyzed for metals. Levels of Pb in Bayou Trepagnier swamp trees were compared to levels in nine baldcypress trees growing along Stinking Bayou, a reference area. During the last 100 yr, Pb in growth rings of swamp baldcypress trees averaged 8.6 mg/kg (SD 4.88) along one transect and 7.9 mg/kg (SD 5.39) along the other. Lead in the soil along the first transect dropped from >2700 mg/kg (spoil bank) to 10 mg/kg at 420 m into the swamp. Baldcypress trees growing near the refinery on the spoil bank along Bayou Trepagnier (covered in an earlier study) averaged 4.5 mg/kg Pb, and trees along Stinking Bayou averaged 2.1 mg/kg. Trees in the swamp soil with 10 to 425 mg/kg Pb concentrated much more Pb than trees growing on the heavily polluted bank. Greater uptake of Pb by trees in the swamp is discussed in terms of soil dynamics and Pb sources.

Procedural Documentation and Accuracy Assessment of Bathymetric Maps and Area/Capacity Tables for Small Reservoirs

USGS Publications Warehouse

Wilson, Gary L.; Richards, Joseph M.

2006-01-01

Because of the increasing use and importance of lakes for water supply to communities, a repeatable and reliable procedure to determine lake bathymetry and capacity is needed. A method to determine the accuracy of the procedure will help ensure proper collection and use of the data and resulting products. It is important to clearly define the intended products and desired accuracy before conducting the bathymetric survey to ensure proper data collection. A survey-grade echo sounder and differential global positioning system receivers were used to collect water-depth and position data in December 2003 at Sugar Creek Lake near Moberly, Missouri. Data were collected along planned transects, with an additional set of quality-assurance data collected for use in accuracy computations. All collected data were imported into a geographic information system database. A bathymetric surface model, contour map, and area/capacity tables were created from the geographic information system database. An accuracy assessment was completed on the collected data, bathymetric surface model, area/capacity table, and contour map products. Using established vertical accuracy standards, the accuracy of the collected data, bathymetric surface model, and contour map product was 0.67 foot, 0.91 foot, and 1.51 feet at the 95 percent confidence level. By comparing results from different transect intervals with the quality-assurance transect data, it was determined that a transect interval of 1 percent of the longitudinal length of Sugar Creek Lake produced nearly as good results as 0.5 percent transect interval for the bathymetric surface model, area/capacity table, and contour map products.

Mass discharge in a tracer plume: Evaluation of the Theissen Polygon Method

PubMed Central

Mackay, Douglas M.; Einarson, Murray D.; Kaiser, Phil M.; Nozawa-Inoue, Mamie; Goyal, Sham; Chakraborty, Irina; Rasa, Ehsan; Scow, Kate M.

2013-01-01

A tracer plume was created within a thin aquifer by injection for 299 days of two adjacent “sub-plumes” to represent one type of plume heterogeneity encountered in practice. The plume was monitored by snapshot sampling of transects of fully screened wells. The mass injection rate and total mass injected were known. Using all wells in each transect (0.77 m well spacing, 1.4 points/m2 sampling density), the Theissen Polygon Method (TPM) yielded apparently accurate mass discharge (Md) estimates at 3 transects for 12 snapshots. When applied to hypothetical sparser transects using subsets of the wells with average spacing and sampling density from 1.55 to 5.39 m and 0.70 to 0.20 points/m2, respectively, the TPM accuracy depended on well spacing and location of the wells in the hypothesized transect with respect to the sub-plumes. Potential error was relatively low when the well spacing was less than the widths of the sub-plumes (> 0.35 points/m2). Potential error increased for well spacing similar to or greater than the sub-plume widths, or when less than 1% of the plume area was sampled. For low density sampling of laterally heterogeneous plumes, small changes in groundwater flow direction can lead to wide fluctuations in Md estimates by the TPM. However, sampling conducted when flow is known or likely to be in a preferred direction can potentially allow more useful comparisons of Md over multiyear time frames, such as required for performance evaluation of natural attenuation or engineered remediation systems. PMID:22324777

Detecting swift fox: Smoked-plate scent stations versus spotlighting

Treesearch

Daniel W. Uresk; Kieth E. Severson; Jody Javersak

2003-01-01

We compared two methods of detecting presence of swift fox: smoked-plate scent stations and spotlight counts. Tracks were counted on ten 1-mile (1.6-km) transects with bait/tracking plate stations every 0.1 mile (0.16 km). Vehicle spotlight counts were conducted on the same transects. Methods were compared with Spearman's rank order correlation. Repeated measures...

Ocean Drilling Program: Completed Legs

Science.gov Websites

. Austin Leg summary Repository Wolfgang Schlager 102 14-Mar-85 25-Apr-85 Miami, Florida 418 Bermuda Rise Lisbon, Portugal 902-906 New Jersey Sea-Level Transect Peter Blum Gregory Mountain Leg summary Repository , Nova Scotia 1071-1073 Continuing the New Jersey Sea-Level Transect Mitchell J. Malone James A. Austin

A northern Cordilleran ocean-continent transect: Sitka Sound, Alaska, to Atlin Lake, British Columbia

USGS Publications Warehouse

Brew, D.A.; Karl, S.M.; Barnes, D.F.; Jachens, R.C.; Ford, A.B.; Horner, R.

1991-01-01

The 155 km wide, 310 km long Sitka Sound - Atlin Lake continent-ocean transect includes almost all the geologic, geophysical, and geotectonic elements of the Canadian Cordillera. It crosses the Chugach, Wrangellia, Alexander, Stikine, and Cache Creek terranes, the Gravina and Laberge overlap assemblages, intrusive and metamorphic belts, and neotectonic faults that bound major blocks. -from Authors

Effects of even-aged management on forest birds at northern hardwood stand interfaces

Treesearch

Richard M. DeGraaf

1992-01-01

Breeding birds were counted along transects across edges of even-aged northern hardwood stands in the White Mountain National Forest, New Hampshire, U.S.A. Two replicate transects across each of 7 edge types representing 3 classes of contrast (abrupt, intermediate, and subtle) were sampled during June 1983-1985 to define species assemblages at stand edges and estimate...

Influence of disturbance on stand development during forest succession

Treesearch

Jeffrey S. Ward

2013-01-01

Eighty years of data on stand development on 39 strip transects were used to elucidate the influence of disturbance on forest composition. Transects were measured at 10-year intervals between 1927 and 2007, except for 1947, and the resulting data include records of 35,953 stems. Disturbances included a wildfire in 1932, single-year defoliations (1964, 1972, 1981), and...

Flora of Chihuahuan desertscrub on limestone in northeastern Sonora, Mexico

Treesearch

Thomas R. Van Devender; Ana Lilia Reina-Guerrero; J. Jesus Sanchez-Escalante

2013-01-01

Transects were done in desertscrub on limestone to characterize the flora of the westernmost Chihuahuan Desert. Most of the sites (15) were in the Municipios of Agua Prieta and Naco in northeastern Sonora, with single sites near Ascensión, northwestern Chihuahua and east of Douglas in southeastern Arizona. A total of 236 taxa were recorded on transects. Dicot perennial...

Lithology and chronology of ice-sheet fluctuations (magnetic susceptibility of cores from the western Ross Sea)

NASA Technical Reports Server (NTRS)

Jennings, Anne E.

1993-01-01

The goals of the marine geology part of WAIS include reconstructing the chronology and areal extent of ice-sheet fluctuations and understanding the climatic and oceanographic influences on ice-sheet history. As an initial step toward attaining these goals, down-core volume magnetic susceptibility (MS) logs of piston cores from three N-S transects in the western Ross Sea are compared. The core transects are within separate petrographic provinces based on analyses of till composition. The provinces are thought to reflect the previous locations of ice streams on the shelf during the last glaciation. Magnetic susceptibility is a function of magnetic mineral composition, sediment texture, and sediment density. It is applied in the western Ross Sea for two purposes: (1) to determine whether MS data differentiates the three transects (i.e., flow lines), and thus can be used to make paleodrainage reconstructions of the late Wisconsinan ice sheet; and (2) to determine whether the MS data can aid in distinguishing basal till diamictons from diamictons of glacial-marine origin and thus, aid paleoenvironmental interpretations. A comparison of the combined data of cores in each transect is presented.

Multifractal analyis of soil invertebrates along a transect under different land uses

NASA Astrophysics Data System (ADS)

Machado Siqueira, Glécio; Alves Silva, Raimunda; Vidal-Vázquez, Eva; Paz-González, Antonio

2017-04-01

Soil fauna play a central role in many essential ecosystem processes. Land use and management can have a dramatic effect upon soil invertebrate community. Indices based on soil invertebrates abundance and diversity are fundamental for soil quality assessment. Many soil properties and attributes have been shown to exhibit spatial variabilityThe aim of this study was to analyze the scaling heterogeneity of the soil invertebrate community sampled using pitfall traps across a transect. The field study was conducted at Mata Roma municipality, Maranhão State, Brazil. Transects were marked under seven different agricultural/forestry land uses (millet, soybean, maize, eucalyptus, pasture, secondary savannah and native savannah). Native vegetation was considered as a reference, whereas the agricultural fields showed a range of soil use intensities. Along these transects 130 pitfall per land use were installed. First, differences in community assemblages and composition under different land use systems were evaluated using classical indices. Then, the spatial distribution of soil fauna trapped by pitfall techniques, characterized through generalized dimension, Dq, and singularity spectra, f(α) - α, showed a well-defined multifractal structure. Differences in scaling heterogeneity and other multifractal characteristics were examined in relation to land use intensification.

Clamp-Crushing versus stapler hepatectomy for transection of the parenchyma in elective hepatic resection (CRUNSH) - A randomized controlled trial (NCT01049607)

PubMed Central

2011-01-01

Background Hepatic resection is still associated with significant morbidity. Although the period of parenchymal transection presents a crucial step during the operation, uncertainty persists regarding the optimal technique of transection. It was the aim of the present randomized controlled trial to evaluate the efficacy and safety of hepatic resection using the technique of stapler hepatectomy compared to the simple clamp-crushing technique. Methods/Design The CRUNSH Trial is a prospective randomized controlled single-center trial with a two-group parallel design. Patients scheduled for elective hepatic resection without extrahepatic resection at the Department of General-, Visceral- and Transplantation Surgery, University of Heidelberg are enrolled into the trial and randomized intraoperatively to hepatic resection by the clamp-crushing technique and stapler hepatectomy, respectively. The primary endpoint is total intraoperative blood loss. A set of general and surgical variables are documented as secondary endpoints. Patients and outcome-assessors are blinded for the treatment intervention. Discussion The CRUNSH Trial is the first randomized controlled trial to evaluate efficacy and safety of stapler hepatectomy compared to the clamp-crushing technique for parenchymal transection during elective hepatic resection. Trial Registration ClinicalTrials.gov: NCT01049607 PMID:21888669

Two-surgeon technique for liver transection using precoagulation by a soft-coagulation system and ultrasonic dissection.

PubMed

Yamada, Nobuya; Amano, Ryosuke; Kimura, Kenjiro; Murata, Akihiro; Yashiro, Masakazu; Tanaka, Sayaka; Wakasa, Kenichi; Hirakawa, Kosei

2015-01-01

A soft-coagulation system (SCS) was introduced as an effective device to reduce blood loss in hepatectomy. Here we evaluated the efficacy of a two-surgeon technique using precoagulation by an SCS and the Cavitron Ultrasonic Surgical Aspirator (CUSA) for liver transection. The 163 patients with liver tumors were divided into two groups (conventional group and two-surgeon group). Liver transection was conducted using saline-coupled bipolar electrocautery and CUSA in 102 patients (conventional group). In 61 patients (the two-surgeon group), a two-surgeon technique using precoagulation by an SCS and CUSA for liver resection was performed. The median blood loss was significantly less in the two-surgeon group compared to the conventional group (354.8 mL vs. 557.8 mL, respec tively: p = 0.0011). The postoperative hospital stay was significantly shorter in the two-surgeon group compared to the conventional group (12.7 days vs. 15.5 days, p = 0.0035). The two-surgeon technique using precoagulation by an SCS and CUSA was significantly reduced blood loss during liver transection, and associated with low morbidity and mortality. This technique may be useful for many hepatobiliary surgeons.

Seasonal effects on the population structure of Prochlorococcus in the North Pacific Ocean

NASA Astrophysics Data System (ADS)

Calfee, B. C.; Johnson, Z. I.; Wilhelm, S.; Zinser, E. R.

2016-02-01

Prochlorococcus is one of the most abundant marine phytoplankton and is responsible for a large portion of oceanic primary production. Basin-scale meridional transects and time series studies at fixed stations have established that the Prochlorococcus population in the surface mixed layer is partitioned with respect to temperature, with the eMIT9312 ecotype dominating the warmer, lower latitudes, and eMED4 dominating the colder, higher latitudes. Spatial and temporal resolution of this relationship is however not well characterized particularly in the higher latitudes where the transitions of ecotypic dominance occur. To improve our understanding of Prochlorococcus dynamics in these high latitudes, we performed a pair of research expeditions spanning the Prochlorococcus habitat range north of Hawaii. Winter and summer cruises along a similar transect allowed for assessment of seasonal succession in this region. For the winter transect, trends in ecotype abundances as a function of latitude were consistent with those found in prior studies. Surprisingly, ecotype abundances of the summer transect deviated from these trends, and indicate that seasonal progression in these high latitude waters is not simply a function of temperature dictating relative ecotype abundances. Potential reasons for this observation will be discussed.

Water-quality data for the Ohio River from Willow Island Dam to Belleville Dam, West Virginia and Ohio, June-October 1991

USGS Publications Warehouse

Chambers, D.B.; Miller, K.F.; Waldron, M.C.; Falkenburg, C.W.

1994-01-01

This report contains water-quality data for the Ohio River from river mile 160.6 (1.1 mi upstream from Willow Island Dam) to river mile 203.6 (0.3 mi upstream from Belleville Dam) during the summer of 1991. Water quality was determined by a combi- nation of synoptic field measurements and laboratory analyses. Synoptic sampling consisted of 8 cross-sectional transects and a longitudinal transect with 28 mid-channel stations. Each cross- sectional transect included five vertical profiles of water temperature, dissolved oxygen concen- tration, pH, and specific conductance. Longi- tudinal transect stations were sampled at three depths (near the surface, middle of the water column, and at or near the bottom) for the same characteristics. Sampling was completed in 3 days or less, and was repeated approximately every 2 weeks from June through October 1991. Beginning in August 1991, water samples were collected at selected locations and analyzed for chlorophyll-a and pheophytin concentrations, as measures of phytoplankton biomass and phytoplankton-degradation products, respectively. The depth of light penetration was estimated at all pigment-sampling locations.

Lithologic and physicochemical properties and hydraulics of flow in and near the freshwater/saline-water transition zone, San Antonio segment of the Edwards aquifer, south-central Texas, based on water-level and borehole geophysical log data, 1999-2007

USGS Publications Warehouse

Lambert, Rebecca B.; Hunt, Andrew G.; Stanton, Gregory P.; Nyman, Michael B.

2010-01-01

The freshwater zone of the San Antonio segment of the Edwards aquifer in south-central Texas (hereinafter, the Edwards aquifer) is bounded to the south and southeast by a zone of transition from freshwater to saline water (hereinafter, the transition zone). The boundary between the two zones is the freshwater/saline-water interface (hereinafter, the interface), defined as the 1,000-milligrams per liter dissolved solids concentration threshold. This report presents the findings of a study, done by the U.S. Geological Survey in cooperation with the San Antonio Water System, to obtain lithologic properties (rock properties associated with known stratigraphic units) and physicochemical properties (fluid conductivity and temperature) and to analyze the hydraulics of flow in and near the transition zone of the Edwards aquifer on the basis of water-level and borehole geophysical log data collected from 15 monitoring wells in four transects during 1999-2007. No identifiable relation between conductivity values from geophysical logs in monitoring wells in all transects and equivalent freshwater heads in the wells at the times the logs were run is evident; and no identifiable relation between conductivity values and vertical flow in the boreholes concurrent with the times the logs were run is evident. The direction of the lateral equivalent freshwater head gradient and thus the potential lateral flow at the interface in the vicinity of the East Uvalde transect fluctuates between into and out of the freshwater zone, depending on recharge and withdrawals. Whether the prevailing direction on average is into or out of the freshwater zone is not clearly indicated. Equivalent freshwater head data do not indicate a prevailing direction of the lateral gradient at the interface in the vicinity of the Tri-County transect. The prevailing direction on average of the lateral gradient and thus potential lateral flow at the interface in the vicinity of the Kyle transect likely is from the transition zone into the freshwater zone. The hypothesis regarding the vertical gradient at the East Uvalde transect, and thus the potential for vertical flow near an interface conceptualized as a surface sloping upward in the direction of the dip of the stratigraphic units, is that the potential for vertical flow fluctuates between into and out of the freshwater zone, depending on recharge and withdrawals. At the Tri-County transect, a downward gradient on the fresh-water side of the interface and an upward gradient on the saline-water side are evidence of opposing potentials that appear to have stabilized the position of the interface over the range of hydrologic conditions that occurred at the times the logs were run. At the Fish Hatchery transect, an upward gradient on the saline-water side of the interface, coupled with the assumption of a sloping interface, implies a vertical gradient from the transition zone into the freshwater zone. This potential for vertical movement of the interface apparently was opposed by the potential (head) on the freshwater side of the interface that kept the interface relatively stable over the range of hydrologic conditions during which the logs were run. The five flow logs for Kyle transect freshwater well KY1 all indicate upward flow that originates from the Glen Rose Limestone, the uppermost unit of the Trinity aquifer; and one log for well KY2 shows upward flow entering the borehole from the Trinity aquifer. These flow data constitute evidence of the potential for flow from the Trinity aquifer into the Edwards aquifer in the vicinity of the Kyle transect. Subsurface temperature data indicate that flow on average is more active, or vigorous, on the freshwater side of the interface than on the saline-water side. A hydraulic connection between the transition zone and the freshwater zone is indicated by similar patterns in the hydrographs of the 15 transect monitoring wells in and near the transition zone and three county index wel

West margin of North America - A synthesis of recent seismic transects

USGS Publications Warehouse

Fuis, G.S.

1998-01-01

A comparison of the deep structure along nine recent transects of the west margin of North America shows many important similarities and differences. Common tectonic elements identified in the deep structure along these transects include actively subducting oceanic crust, accreted oceanic/arc (or oceanic-like) lithosphere of Mesozoic through Cenozoic ages. Cenozoic accretionary prisms, Mesozoic accretionary prisms, backstops to the Mesozoic prisms, and undivided lower crust. Not all of these elements are present along all transects. In this study, nine transects, including four crossing subduction zones and five crossing transform faults, are plotted at the same scale and vertical exaggeration (V.E. 1:1), using the above scheme for identifying tectonic elements. The four subduction-zone transects contain actively subducting oceanic crust. Cenozoic accretionary prisms, and bodies of basaltic rocks accreted in the Cenozoic, including remnants of a large, oceanic plateau in the Oregon and Vancouver Island transects. Rocks of age and composition (Eocene basalt) similar to the oceanic plateau are currently subducting in southern Alaska, where they are doubled up on top of Pacific oceanic crust and have apparently created a giant asperity, or impediment to subduction. Most of the subduction-zone transects also contain Mesozoic accretionary prisms, and two of them, Vancouver Island and Alaska, also contain thick, technically underplated bodies of late Mesozoic/early Cenozoic oceanic lithosphere, interpreted as fragments of the extinct Kula plate. In the upper crust, most of the five transform-fault transects (all in California) reflect: (1) tectonic wedging of a Mesozoic accretionary prism into a backstop, which includes Mesozoic/early Cenozoic forearc rocks and Mesozoic ophiolitic/arc basement rocks: and (2) shuffling of the subduction margin of California by strike-slip faulting. In the lower crust, they may reflect migration of the Mendocino triple junction northward (seen in rocks east of the San Andreas fault) and cessation of Farallon-plate subduction (seen in rocks west of the San Andreas fault). In northern California, lower-crustal rocks east of the San Andreas fault have oceanic-crustal velocity and thickness and contain patches of high reflectivity. They may represent basaltic rocks magmatically underplated in the wake of the migration of the Mendocino triple junction, or they may represent stalled, subducted fragments of the Farallon/Gorda plate. The latter alternative does not fit the accepted 'slabless window' model for the migration of the triple junction. This lower-crustal layer and the Moho are offset at the San Andreas and Maacama faults. In central California, a similar lower-crustal layer is observed west of the San Andreas fault. West of the continental slope, it is Pacitic oceanic crust, but beneath the continent it may represent either Pacific oceanic crust, stalled, subducted fragments (microplates) of the Farallon plate, or basaltic rocks magmatically underplated during subduction of the Pacific/Farallon ridge or during breakup of the subducted Farallon plate. The transect in southern California is only partly representative of regional structure, as the structure here is 3-dimensional. In the upper crust, a Mesozoic prism has been thrust beneath crystalline basement rocks of the San Gabriel Mountains and Mojave Desert. In the mid-crust, a bright reflective zone is interpreted as a possible 'master' decollement that can be traced from the fold-and-thrust belt of the Los Angeles basin northward to at least the San Andreas fault. A Moho depression beneath the San Gabriel Mountains is consistent with downwelling of lithospheric mantle beneath the Transverse Ranges that appears to be driving the compression across the Transverse Ranges and Los Angeles basin. ?? 1998 Elsevier Science B.V. All rights reserved.

Yeast and bacterial diversity along a transect in an acidic, As-Fe rich environment revealed by cultural approaches.

PubMed

Delavat, François; Lett, Marie-Claire; Lièvremont, Didier

2013-10-01

Acid mine drainages (AMDs) are often thought to harbour low biodiversity, yet little is known about the diversity distribution along the drainages. Using culture-dependent approaches, the microbial diversity from the Carnoulès AMD sediment was investigated for the first time along a transect showing progressive environmental stringency decrease. In total, 20 bacterial genera were detected, highlighting a higher bacterial diversity than previously thought. Moreover, this approach led to the discovery of 16 yeast species, demonstrating for the first time the presence of this important phylogenetic group in this AMD. All in all, the location of the microbes along the transect helps to better understand their distribution in a pollution gradient. Copyright © 2013 Elsevier B.V. All rights reserved.

Delineating high-density areas in spatial Poisson fields from strip-transect sampling using indicator geostatistics: application to unexploded ordnance removal.

PubMed

Saito, Hirotaka; McKenna, Sean A

2007-07-01

An approach for delineating high anomaly density areas within a mixture of two or more spatial Poisson fields based on limited sample data collected along strip transects was developed. All sampled anomalies were transformed to anomaly count data and indicator kriging was used to estimate the probability of exceeding a threshold value derived from the cdf of the background homogeneous Poisson field. The threshold value was determined so that the delineation of high-density areas was optimized. Additionally, a low-pass filter was applied to the transect data to enhance such segmentation. Example calculations were completed using a controlled military model site, in which accurate delineation of clusters of unexploded ordnance (UXO) was required for site cleanup.

Pilot study of intraoperative ultrasound-guided instrument placement in nerve transection surgery for peripheral nerve pain syndromes.

PubMed

Henning, P Troy; Wilson, Thomas J; Willsey, Matthew; John, Jessin K; Popadich, Miriana; Yang, Lynda J S

2017-03-01

Surgical transection of sensory nerves in the treatment of intractable neuropathic pain is a commonly performed procedure. At times these cases can be particularly challenging when encountering obese patients, when targeting deeper nerves or those with a variable branching pattern, or in the case of repeat operations. In this case series, the authors describe their experience with ultrasound-guided surgical instrument placement during transection of a saphenous nerve in the region of prior vascular surgery in 1 patient and in the lateral femoral cutaneous nerve in 2 obese patients. The authors also describe this novel technique and provide pilot data that suggests ultrasound-assisted surgery may allow for complex cases to be completed in an expedited fashion through smaller incisions.

Repair of an incompetent urethral sphincter in a mare.

PubMed

Schumacher, Jim; Brink, Palle

2011-01-01

To describe successful surgical treatment of urinary incontinence caused by a ruptured and/or transected urethral sphincter in a mare. Clinical report. A 7-year-old, Swedish Warmblood mare with urinary incontinence. The urethral sphincter, which had been damaged during removal of a cystic urolith, was repaired by apposing the ends of the disrupted urethralis muscle and tunica muscularis. The mare was no longer incontinent after repair of the defect by apposition of the ends of the urethralis muscle and tunica muscularis. Transection and/or rupture of the urethral sphincter of a mare may result in urinary incontinence. Apposition of the ends of the ruptured or transected urethralis muscle and tunica muscularis can correct urinary incontinence caused by this defect. © Copyright 2010 by The American College of Veterinary Surgeons.

Non-operative management of a grade IV pancreatic injury

PubMed Central

Hiremath, Bharati; Hegde, Nishchit

2014-01-01

Isolated pancreatic transection with ductal disruption in blunt abdominal trauma is extremely rare. We report the case of a 14-year-old boy who suffered pancreatic transection at the junction of body and head of the pancreas; yet remarkably recovered after initial conservative management. He was periodically examined clinically and underwent regular abdominal ultrasonography. Nearly 6 months later, endoscopic retrograde cholangiopancreatography with pancreatic duct stenting, pancreatic sphincterotomy and cystogastrostomy for the pseudocyst diagnosed during the follow-up period was performed. Acute surgical management of pancreatic transection is fraught with high mortality and morbidity. Through this effort, we highlight the successful role of non-operative management of a haemodynamically stable patient with grade IV pancreatic injury, thereby avoiding radical surgery in the acute stage and preserving exocrine and endocrine function. PMID:24788631

Acid Volatile Sulfides (avs) and the Bioavailability of Trace Metals in the Channel of the SÃO Francisco River, Sepetiba Bay - de Janeiro-Brazil

NASA Astrophysics Data System (ADS)

Monte, Christiane; Rodrigues, Ana Paula; Marinho, Matheus; Quaresma, Tássia; Machado, Wilson

2014-05-01

Sepetiba Bay has 430 Km2 of internal and 2,500 Km2 area of the drainage basin (Lacerda et al., 2007), located 60 km west of the city of Rio de Janeiro. Sepetiba Bay has 430 Km2 of internal and 2,500 Km2 area of the drainage basin (Lacerda et al., 2007), located 60 km west of the city of Rio de Janeiro.The San Francisco channel comes from the Guandu River and empties into Sepetiba Bay and is the main contributor of freshwater to the estuarine system. The Guandu River system/channel of San Francisco receives contribution of domestic and industrial effluents, which go largely to Sepetiba Bay. This work aimed to evaluate the .This work aimed to evaluate the ratio SEM/AVS as a way of predicting bioavailability trace metals from industrial sewage, mainly, in the estuarine system of Sepetiba. This model is based on the property of some Divalent metal cations (Cd, Cu, Ni, Pb and Zn), by presenting a low solubility constant, are removed from the soluble fraction by precipitation, forming secondary metal sulfides. Were held four transects, made up of three points each, the coast line to the center of the Bay. The surface sediment was collected with a van Veen sampler type ,packed in glass jars and kept frozen until analysis.The determination of SEM/AVS followed the methodology described by Allen et al. (1991). The variation between sulfide 159.88 ± 0.05 µmol/g on 12 points. The metals that entered the sum of simultaneous extraction were: Cd, Cu, Ni, Pb and Zn ranging from: 6.47 ± 0.11 µmol/g on sum.The means (± standard deviation) ratio SEM/AVS per transect were: 1.04 ± 1.20 (transect 1); 0.48 ± 0.53 (transect 2); 1.26 ± 1.32 (transect 3) and 0.18 ± 0.14 (transect 4). Only transects 1 and 3 had higher results than 1 , meaning that there are more divalent metal sulfides in the environment. This means that only the sulfides would not be capable of complex and may reflect the potential bioavailability of these in the aquatic environment. There is no statistical difference between the transects. According to the studies done previously in the area for concentrations of AVS MADDOCK et at. (2007) found values greater than 290 μmol g-1, MACHADO et al. (2008) found concentrations between 5.2-121 μmol g-1 in the Herons Cove and RODRIGUES (2013) found concentrations between 14.26 to 41.46 μmol g-1 in the Engenho's Sac.The results may reflect the oxic conditions of the environment, which interferes with the reduction of SO4. Additionally, other mechanisms of metal retention in the sediment may be occurring at the site, together with the interfering sulfide. Key words: estuary sediment and simultaneous extraction of metals.

Small mammal populations in a restored stream corridor

Treesearch

Lynn D. Wike; F. Douglas Martin; Hugh G. Hanlin; Linda S. Paddock

2000-01-01

An opportunity to study the response of a small mammal community to restoration of a riparian wetland was provided by the Pen branch project at the Savannah river site (SRS). Live trapping of small mammals was conducted on six transects at Pen branch in 1996 and 1998 and at three transects at Meyers branch, an unimpacted stream at SRS, in 1997 and 1998. Distributions...

End-point diameter and total length coarse woody debris models for the United States

Treesearch

C.W. Woodall; J.A. Westfall; D.C. Lutes; S.N. Oswalt

2008-01-01

Coarse woody debris (CWD) may be defined as dead and down trees of a certain minimumsize that are an important forest ecosystem component (e.g., wildlife habitat, carbon stocks, and fuels). Due to field efficiency concerns, some natural resource inventories only measure the attributes of CWD pieces at their point of intersection with a sampling transect (e.g., transect...

Changes in soil bulk density resulting from construction and conventional cable skidding using preplanned skid trails

Treesearch

Jingxin Wang; Chris B. LeDoux; Pam Edwards

2007-01-01

A harvesting system consisting of chainsaw felling and cable skidder extraction was studied to determine soil bulk density changes in a central Appalachian hardwood forest site. Soil bulk density was measured using a nuclear gauge preharvest and postharvest systematically across the harvest site, on transects across skid trails, and for a subset of skid trail transects...

Utility of Satellite LIDAR Waveform Data in Shallow Water

DTIC Science & Technology

2010-06-01

American Samoa, Guam, Tuvalu, Palau, Vanuatu, Micronesia, Kiribati, Nauru, Solomon Islands, Puka Puka, Jarvis Islands, and the Johnston Atoll . Seventy...intensity. Transects are studied from three geographic areas; Kure Atoll (near Midway), the Bahamas, and Sequoia National Forest. Differences in the data...nm sensor measures both total power and the perpendicularly polarized intensity. Transects are studied from three geographic areas; Kure Atoll (near

The distribution of mercury in a forest floor transect across the central United States

Treesearch

Charles H. (Hobie) Perry; Michael C. Amacher; William Cannon; Randall K. Kolka; Laurel Woodruff

2009-01-01

Mercury (Hg) stored in soil organic matter may be released when the forest floor is consumed by fire. Our objective is to document the spatial distribution of forest floor Hg for a transect crossing the central United States. Samples collected by the Forest Service, U.S. Department of Agriculture's Forest Inventory and Analysis Soil Quality Indicator were tested...

Correction for slope in point and transect relascope sampling of downed coarse woody debris

Treesearch

Goran Stahl; Anna Ringvall; Jeffrey H. Gove; Mark J. Ducey

2002-01-01

In this article, the effect of sloping terrain on estimates in point and transect relascope sampling (PRS and TRS, respectively) is studied. With these inventory methods, a wide angle relascope is used either from sample points (PRS) or along survey lines (TRS). Characteristics associated with line-shaped objects on the ground are assessed, e.g., the length or volume...

A structural transect across the Mongolian Western Altai: Active transpressional mountain building in central Asia

NASA Astrophysics Data System (ADS)

Dickson Cunningham, W.; Windley, Brian F.; Dorjnamjaa, D.; Badamgarov, G.; Saandar, M.

1996-02-01

We present results from the first detailed geological transect across the Mongolian Western Altai using modern methods of structural geology and fault kinematic analysis. Our purpose was to document the structures responsible for Cenozoic uplift of the range in order to better understand processes of intracontinental mountain building. Historical right-lateral strike-slip and oblique-slip earthquakes have previously been documented from the Western Altai, and many mountain fronts are marked by active fault scarps indicating current tectonic activity and uplift. The dominant structures in the range are long (>200 km) NNW trending right-lateral strike-slip faults. Our transect can be divided into three separate domains that contain active, right-lateral strike-slip master faults and thrust faults with opposing vergence. The current deformation regime is thus transpressional. Each domain has an asymmetric flower structure cross-sectional geometry, and the transect as a whole is interpreted as three separate large flower structures. The mechanism of uplift along the transect appears to be horizontal and vertical growth of flower structures rooted into the dominant right-lateral strike-slip faults. The major Bulgan Fault forms the southern structural boundary to the range and is a 3.5-km-wide brittle-ductile zone that has accommodated reverse and left-lateral strike-slip displacements. It appears to be linked to the North Gobi Fault Zone to the east and Irtysh Fault zone to the west and thus may be over 900 km in length. Two major ductile left-lateral extensional shear zones were identified in the interior of the range that appear to be preserved structures related to a regional Paleozoic or Mesozoic extensional event. Basement rocks along the transect are dominantly metavolcanic, metasedimentary, or intrusive units probably representing a Paleozoic accretionary prism and arc complex. The extent to which Cenozoic uplift has been accommodated by reactivation of older structures and inversion of older basins is unknown and will require further study. As previously suggested by others, Cenozoic uplift of the Altai is interpreted to be due to NE-SW directed compressional stress resulting from the Indo-Eurasian collision 2500 km to the south.

Paleo-Productivity across the Paleocene-Eocene Thermal Maximum, Walvis Ridge Transect (ODP Sites 1262, 1263, and 1266)

NASA Astrophysics Data System (ADS)

Chun, C. O.; Delaney, M. L.; Zachos, J. C.

2005-12-01

Walvis Ridge transect (Ocean Drilling Program (ODP) Leg 208) provides the first high-resolution depth-transect of deep-sea sediments recovered from the south Atlantic across the P/E boundary. A geographically restricted depth transect (~ 2.2 km, water depths between 2500 and 4770 m) allows us to constrain the surface waters by assuming marine productivity conditions in the overlying water column are similar across all sites. The sediment record will reveal variations for processes that are water-depth dependent. We use the geochemical tracers; biogenic barium, phosphorus, calcium carbonate, and the redox sensitive trace elements manganese and uranium, to reconstruct nutrient burial, paleoproductivity, and bottom water redox chemistry across the Paleocene-Eocene Thermal Maximum (PETM). We calculate our concentrations on a calcium carbonate-free basis to account for dilution by non-carbonate sediments. Trace metal enrichment factors (EFs) are calculated relative to bulk crustal averages. We chose three sites from the depth transect: the shallowest (Site 1263, 2717 m water depth), an intermediate site (Site 1266, 3798 m water depth), and the deepest site (Site 1262, 4755 m water depth). We sampled each site at a sample resolution of ~ 1-2 kyr for 5 m.y. centered at 55 Ma. Uranium EFs at the shallow site exhibits values ~ 5 pre-event and drop to values near crustal averages during and after the carbon isotope excursion (CIE). No dramatic changes in U EFs across the P/E boundary are recorded at the deep and intermediate sites. Mn EFs range between 2.9 -8.6 prior to the event across all three sites, suggesting an oxygenated depositional environment. At the boundary, Mn EFs drop to crustal averages at all sites, then gradually return to pre-event values, indicating more reducing environments during the CIE, a possible explanation for the benthic extinction event (BEE) observed across this transect. Ba excess and reactive phosphorus exhibit decreased concentrations during the CIE with gradual return to pre-event values at the shallowest and deepest sites. We will compare the paleo-productivity and redox chemistry response at the Walvis Ridge sites across the PETM.

Thoracic 9 Spinal Transection-Induced Model of Muscle Spasticity in the Rat: A Systematic Electrophysiological and Histopathological Characterization

PubMed Central

Corleto, Jose A.; Bravo-Hernández, Mariana; Kamizato, Kota; Kakinohana, Osamu; Santucci, Camila; Navarro, Michael R.; Platoshyn, Oleksandr; Cizkova, Dasa; Lukacova, Nadezda; Taylor, Julian; Marsala, Martin

2015-01-01

The development of spinal hyper-reflexia as part of the spasticity syndrome represents one of the major complications associated with chronic spinal traumatic injury (SCI). The primary mechanism leading to progressive appearance of muscle spasticity is multimodal and may include loss of descending inhibitory tone, alteration of segmental interneuron-mediated inhibition and/or increased reflex activity to sensory input. Here, we characterized a chronic thoracic (Th 9) complete transection model of muscle spasticity in Sprague-Dawley (SD) rats. Isoflurane-anesthetized rats received a Th9 laminectomy and the spinal cord was transected using a scalpel blade. After the transection the presence of muscle spasticity quantified as stretch and cutaneous hyper-reflexia was identified and quantified as time-dependent changes in: i) ankle-rotation-evoked peripheral muscle resistance (PMR) and corresponding electromyography (EMG) activity, ii) Hoffmann reflex, and iii) EMG responses in gastrocnemius muscle after paw tactile stimulation for up to 8 months after injury. To validate the clinical relevance of this model, the treatment potency after systemic treatment with the clinically established anti-spastic agents baclofen (GABAB receptor agonist), tizanidine (α2-adrenergic agonist) and NGX424 (AMPA receptor antagonist) was also tested. During the first 3 months post spinal transection, a progressive increase in ankle rotation-evoked muscle resistance, Hoffmann reflex amplitude and increased EMG responses to peripherally applied tactile stimuli were consistently measured. These changes, indicative of the spasticity syndrome, then remained relatively stable for up to 8 months post injury. Systemic treatment with baclofen, tizanidine and NGX424 led to a significant but transient suppression of spinal hyper-reflexia. These data demonstrate that a chronic Th9 spinal transection model in adult SD rat represents a reliable experimental platform to be used in studying the pathophysiology of chronic spinal injury-induced spasticity. In addition a consistent anti-spastic effect measured after treatment with clinically effective anti-spastic agents indicate that this model can effectively be used in screening new anti-spasticity compounds or procedures aimed at modulating chronic spinal trauma-associated muscle spasticity. PMID:26713446

The transect method: a novel approach to on-farm welfare assessment of commercial turkeys

PubMed Central

Marchewka, Joanna; Estevez, Inma; Vezzoli, Giuseppe; Ferrante, Valentina; Makagon, Maja M.

2015-01-01

Currently, no animal-based protocol for on-farm welfare assessment of commercial turkeys is available. The birds’ size and flighty nature make obtaining a representative sample using traditional methods difficult. The transect walks (TW) approach provides a potential alternative for on-farm assessments of turkey welfare. We compared the TW approach with a traditional method, and data collected as the birds were moved out of the house during the load out process (L). Ten commercial 19- to 20-week-old Hybrid turkey flocks were evaluated (1 flock/house/farm). Half of the flocks were housed on farms deemed as “faring well” by the company, the other half were on “suboptimal” farms. Each house was subdivided longitudinally into 4 transects. Two observers walked the transects in random order, recording the total number of birds per transect that were immobile; lame; aggressive towards a mate; interacting with humans; with visible head, vent, or back wounds; engaging in mounting behaviors; small; featherless; dirty; sick; terminal; or dead. Flocks were re-evaluated on the same day using the individual sampling method (S), where randomly selected birds were scored as they took 10 steps. Flocks were re-assessed within 48 h of the transect evaluation, as birds were funneled out of the house during load out. Using ANOVAs we determined the effects of observers, method, management, and their interactions on proportions of turkeys per house within each category. Outcome parameters were not affected by management (P > 0.05 for all) or observer (P > 0.05 for most), but an assessment method effect was detected (P < 0.05). S differed from the 2 other methods (P < 0.05) for most parameters except aggression towards a mate, back wounds, dirty, sick, and vent wounds. Differences were not detected between data collected using TW and during L, except for dead (P = 0.0007) and immobile (P = 0.007). Results suggest that the TW method is a promising tool for on-farm turkey welfare assessment as it produced results similar to those obtained at L when all birds could be scored individually. PMID:25577791

Water-quality data for the Ohio River from New Cumberland Dam to Pike Island Dam, West Virginia and Ohio, May-October 1993

USGS Publications Warehouse

Miller, K.F.; Messinger, Terence; Waldron, M.C.; Faulkenburg, C.W.

1996-01-01

This report contains water-quality data for the Ohio River from river mile 51.1 (3.3 miles upstream from New Cumberland Dam) to river mile 84.0 (0.2 miles upstream from Pike Island Dam) that were collected during the summer and fall of 1993. The data were collected to establish the water quality of the Ohio River and to use in assessing the proposed effects of hydropower development on the water quality of the Ohio River. Water quality was determined by a combination of repeated synoptic field measurements, continuous-record monitoring, and laboratory analyses. Synoptic measurements were made along a longitudinal transect with 18 mid-channel sampling sites; cross-sectional transects of water-quality measurements were made at 5 of these sites. Water-quality measurements also were made at two sites located on the back-channel (Ohio) side of Browns Island. At each longitudinal-transect and back-channel sampling site, measurements were made of specific conductance, pH, water temperature, and dissolved oxygen conentration. Longitudinal-transect and back-channel stations were sampled at four depths (at the surface, about 3.3 feet below the surface, middle of the water column, and near the bottom of the river). Cross-sectional transects consisted of three to four detailed vertical profiles of the same characteristics. Water samples were collected from three depths at the mid-channel vertical profile in each cross-sectional transect and were analyzed for concentrations of phytoplankton photosynthetic pigments chlorophyll a and chlorophyll b. Estimates of the depth of light penetration (Secchi-disk transparency) were made at pigment-sampling locations whenever light and river-surface conditions were appropriate. Synoptic sampling usually was completed in 12 hours or less and was repeated 10 times from May through October 1993. Continuous-record monitoring of water quality consisted of hourly measurements of specific conductance, pH, water temperature, and dissolved oxygen concentration, made at a depth of 6.6 feet upstream and downstream of New Cumberland Dam. Continuous monitors were operated from May through October 1993.

The transect method: a novel approach to on-farm welfare assessment of commercial turkeys.

PubMed

Marchewka, Joanna; Estevez, Inma; Vezzoli, Giuseppe; Ferrante, Valentina; Makagon, Maja M

2015-01-01

Currently, no animal-based protocol for on-farm welfare assessment of commercial turkeys is available. The birds' size and flighty nature make obtaining a representative sample using traditional methods difficult. The transect walks (TW) approach provides a potential alternative for on-farm assessments of turkey welfare. We compared the TW approach with a traditional method, and data collected as the birds were moved out of the house during the load out process (L). Ten commercial 19- to 20-week-old Hybrid turkey flocks were evaluated (1 flock/house/farm). Half of the flocks were housed on farms deemed as "faring well" by the company, the other half were on "suboptimal" farms. Each house was subdivided longitudinally into 4 transects. Two observers walked the transects in random order, recording the total number of birds per transect that were immobile; lame; aggressive towards a mate; interacting with humans; with visible head, vent, or back wounds; engaging in mounting behaviors; small; featherless; dirty; sick; terminal; or dead. Flocks were re-evaluated on the same day using the individual sampling method (S), where randomly selected birds were scored as they took 10 steps. Flocks were re-assessed within 48 h of the transect evaluation, as birds were funneled out of the house during load out. Using ANOVAs we determined the effects of observers, method, management, and their interactions on proportions of turkeys per house within each category. Outcome parameters were not affected by management (P>0.05 for all) or observer (P>0.05 for most), but an assessment method effect was detected (P<0.05). S differed from the 2 other methods (P<0.05) for most parameters except aggression towards a mate, back wounds, dirty, sick, and vent wounds. Differences were not detected between data collected using TW and during L, except for dead (P=0.0007) and immobile (P=0.007). Results suggest that the TW method is a promising tool for on-farm turkey welfare assessment as it produced results similar to those obtained at L when all birds could be scored individually. © The Author 2015. Published by Oxford University Press on behalf of Poultry Science Association.

Testing the hypothesis of neurodegeneracy in respiratory network function with a priori transected arterially perfused brain stem preparation of rat

PubMed Central

Jones, Sarah E.

2016-01-01

Degeneracy of respiratory network function would imply that anatomically discrete aspects of the brain stem are capable of producing respiratory rhythm. To test this theory we a priori transected brain stem preparations before reperfusion and reoxygenation at 4 rostrocaudal levels: 1.5 mm caudal to obex (n = 5), at obex (n = 5), and 1.5 (n = 7) and 3 mm (n = 6) rostral to obex. The respiratory activity of these preparations was assessed via recordings of phrenic and vagal nerves and lumbar spinal expiratory motor output. Preparations with a priori transection at level of the caudal brain stem did not produce stable rhythmic respiratory bursting, even when the arterial chemoreceptors were stimulated with sodium cyanide (NaCN). Reperfusion of brain stems that preserved the pre-Bötzinger complex (pre-BötC) showed spontaneous and sustained rhythmic respiratory bursting at low phrenic nerve activity (PNA) amplitude that occurred simultaneously in all respiratory motor outputs. We refer to this rhythm as the pre-BötC burstlet-type rhythm. Conserving circuitry up to the pontomedullary junction consistently produced robust high-amplitude PNA at lower burst rates, whereas sequential motor patterning across the respiratory motor outputs remained absent. Some of the rostrally transected preparations expressed both burstlet-type and regular PNA amplitude rhythms. Further analysis showed that the burstlet-type rhythm and high-amplitude PNA had 1:2 quantal relation, with burstlets appearing to trigger high-amplitude bursts. We conclude that no degenerate rhythmogenic circuits are located in the caudal medulla oblongata and confirm the pre-BötC as the primary rhythmogenic kernel. The absence of sequential motor patterning in a priori transected preparations suggests that pontine circuits govern respiratory pattern formation. PMID:26888109

Testing the hypothesis of neurodegeneracy in respiratory network function with a priori transected arterially perfused brain stem preparation of rat.

PubMed

Jones, Sarah E; Dutschmann, Mathias

2016-05-01

Degeneracy of respiratory network function would imply that anatomically discrete aspects of the brain stem are capable of producing respiratory rhythm. To test this theory we a priori transected brain stem preparations before reperfusion and reoxygenation at 4 rostrocaudal levels: 1.5 mm caudal to obex (n = 5), at obex (n = 5), and 1.5 (n = 7) and 3 mm (n = 6) rostral to obex. The respiratory activity of these preparations was assessed via recordings of phrenic and vagal nerves and lumbar spinal expiratory motor output. Preparations with a priori transection at level of the caudal brain stem did not produce stable rhythmic respiratory bursting, even when the arterial chemoreceptors were stimulated with sodium cyanide (NaCN). Reperfusion of brain stems that preserved the pre-Bötzinger complex (pre-BötC) showed spontaneous and sustained rhythmic respiratory bursting at low phrenic nerve activity (PNA) amplitude that occurred simultaneously in all respiratory motor outputs. We refer to this rhythm as the pre-BötC burstlet-type rhythm. Conserving circuitry up to the pontomedullary junction consistently produced robust high-amplitude PNA at lower burst rates, whereas sequential motor patterning across the respiratory motor outputs remained absent. Some of the rostrally transected preparations expressed both burstlet-type and regular PNA amplitude rhythms. Further analysis showed that the burstlet-type rhythm and high-amplitude PNA had 1:2 quantal relation, with burstlets appearing to trigger high-amplitude bursts. We conclude that no degenerate rhythmogenic circuits are located in the caudal medulla oblongata and confirm the pre-BötC as the primary rhythmogenic kernel. The absence of sequential motor patterning in a priori transected preparations suggests that pontine circuits govern respiratory pattern formation. Copyright © 2016 the American Physiological Society.

Large-Vessel Sealing in Laparoscopic Colectomy with an Ultrasonic Device

PubMed Central

Plasencia, Gustavo; Van der Speeten, Kurt; Hinoul, Piet; Batiller, Jonathan; Severin, Kimberley S.; Schwiers, Michael L.; Rockall, Tim

2016-01-01

Background and Objective: The Harmonic ACE+7 Shears with Advanced Hemostasis Mode (Ethicon, Somerville, NJ, USA) is an ultrasonic device designed to transect and seal vessels up to 7 mm in diameter. The device applies an algorithm that optimizes ultrasonic energy delivery combined with a longer sealing cycle. The purpose of this study was to assess the initial clinical experience with the Harmonic device by evaluating large-vessel sealing during laparoscopic colectomy in consecutive cases. Methods: This prospective, multicenter, observational series involved 40 adult patients who were to undergo elective laparoscopic colectomy where dissection and transection of the inferior mesenteric artery was indicated. The primary study endpoint was first-pass hemostasis, defined as a single activation of the Advanced Hemostasis Mode to transect and seal the inferior mesenteric artery. The use of any additional energy device or hemostatic product to establish or maintain hemostasis was noted. Patients were observed after surgery for ∼4 weeks for adverse events that were considered to be related to the study procedure or study device. Descriptive statistical analyses were performed for study endpoints. Results: Forty patients underwent the laparoscopic colectomy procedure. First-pass hemostasis of the inferior mesenteric artery was achieved and maintained in all 40 patients, with no required additional hemostatic measures. Exposure of the vessel was reported as skeletonized in 22 of 40 (55%) patients. Mean transection time was 21.9 ± 7.4 s. One adverse event (postoperative anemia) was considered possibly related to the study device. Conclusion: In this initial clinical consecutive series, the device demonstrated successful transection and sealing of the large mesenteric vessels during laparoscopic colorectal surgery. PMID:27186065

Field trials of line transect methods applied to estimation of desert tortoise abundance

USGS Publications Warehouse

Anderson, David R.; Burnham, Kenneth P.; Lubow, Bruce C.; Thomas, L. E. N.; Corn, Paul Stephen; Medica, Philip A.; Marlow, R.W.

2001-01-01

We examine the degree to which field observers can meet the assumptions underlying line transect sampling to monitor populations of desert tortoises (Gopherus agassizii). We present the results of 2 field trials using artificial tortoise models in 3 size classes. The trials were conducted on 2 occasions on an area south of Las Vegas, Nevada, where the density of the test population was known. In the first trials, conducted largely by experienced biologists who had been involved in tortoise surveys for many years, the density of adult tortoise models was well estimated (-3.9% bias), while the bias was higher (-20%) for subadult tortoise models. The bias for combined data was -12.0%. The bias was largely attributed to the failure to detect all tortoise models on or near the transect centerline. The second trials were conducted with a group of largely inexperienced student volunteers and used somewhat different searching methods, and the results were similar to the first trials. Estimated combined density of subadult and adult tortoise models had a negative bias (-7.3%), again attributable to failure to detect some models on or near the centerline. Experience in desert tortoise biology, either comparing the first and second trials or in the second trial with 2 experienced biologists versus 16 novices, did not have an apparent effect on the quality of the data or the accuracy of the estimates. Observer training, specific to line transect sampling, and field testing are important components of a reliable survey. Line transect sampling represents a viable method for large-scale monitoring of populations of desert tortoise; however, field protocol must be improved to assure the key assumptions are met.

Field observations of cohesive sediment dynamics in a partially stratified estuary

NASA Astrophysics Data System (ADS)

Huang, I. B.; Monismith, S. G.; Manning, A. J.

2016-12-01

This research focuses on understanding cohesive sediment dynamics and transport in a partially stratified estuary, the San Francisco Bay-Delta estuary. Three different datasets are used in this study: 1) Polaris transects: seven longitudinal transects collected on the R/V Polaris in collaboration with the USGS SFB monthly water monitoring project (http://sfbay.wr.usgs.gov/access/wqdata); 2) Questuary transects: two two-day transects collected on the R/V Questuary spanning from Suisun Bay to the Delta, near Sacramento, CA; and 3) Questuary stationary: a 48-hr stationary profiling experiment collected on the R/V Questuary at the low-salinity zone in Rio Vista, CA. Altogether, these cruises covered a spatial range of approximately 220 km from June 2008 to November 2015. Vertical profiles of particle size distributions (PSDs), total floc volume concentrations, pressure, salinity, temperature, fluorescence, suspended sediment concentrations (SSC via optical backscatter calibration), and photosynthetically irradiance (PAR) were collected in all experiments using a LISST 100X Type B or Type C (Sequoia Scientific) and a SBE 19+ CTD (Seabird Electronics). Background currents were monitored using a downward-looking 600 or 1200 kHz ADCP (RDI Teledyne) on all Questuary datasets, and in-situ dissipation profiles were measured using a free-falling VMP-200 (Rockland Scientific) in all datasets except for one Polaris transect. We make the following main observations. First, suspended sediment flocculation significantly enhances particle fall velocity and therefore sediment removal from the water column. Second, we argue that estuarine physics is the main driving mechanism behind floc size changes, rather than chemical or biological factors. Lastly, we show that suspended sediment and light penetration relationships can be improved by accounting for floc size changes under certain conditions.

Major- and trace-element concentrations in soils from two continental-scale transects of the United States and Canada

USGS Publications Warehouse

Smith, David B.; Cannon, William F.; Woodruff, Laurel G.; Garrett, Robert G.; Klassen, Rodney; Kilburn, James E.; Horton, John D.; King, Harley D.; Goldhaber, Martin B.; Morrison, Jean M.

2005-01-01

This report contains major- and trace-element concentration data for soil samples collected from 265 sites along two continental-scale transects in North America. One of the transects extends from northern Manitoba to the United States-Mexico border near El Paso, Tex. and consists of 105 sites. The other transect approximately follows the 38th parallel from the Pacific coast of the United States near San Francisco, Calif., to the Atlantic coast along the Maryland shore and consists of 160 sites. Sampling sites were defined by first dividing each transect into approximately 40-km segments. For each segment, a 1-km-wide latitudinal strip was randomly selected; within each strip, a potential sample site was selected from the most representative landscape within the most common soil type. At one in four sites, duplicate samples were collected 10 meters apart to estimate local spatial variability. At each site, up to four separate soil samples were collected as follows: (1) material from 0-5 cm depth; (2) O horizon, if present; (3) a composite of the A horizon; and (4) C horizon. Each sample collected was analyzed for total major- and trace-element composition by the following methods: (1) inductively coupled plasmamass spectrometry (ICP-MS) and inductively coupled plasma-atomic emission spectrometry (ICPAES) for aluminum, antimony, arsenic, barium, beryllium, bismuth, cadmium, calcium, cerium, cesium, chromium, cobalt, copper, gallium, indium, iron, lanthanum, lead, lithium, magnesium, manganese, molybdenum, nickel, niobium, phosphorus, potassium, rubidium, scandium, silver, sodium, strontium, sulfur, tellurium, thallium, thorium, tin, titanium, tungsten, uranium, vanadium, yttrium, and zinc; (2) cold vapor- atomic absorption spectrometry for mercury; (3) hydride generation-atomic absorption spectrometry for antimony and selenium; (4) coulometric titration for carbonate carbon; and (5) combustion for total carbon and total sulfur.

Soil microbial biomass, activity and community composition along altitudinal gradients in the High Arctic (Billefjorden, Svalbard)

NASA Astrophysics Data System (ADS)

Kotas, Petr; Šantrůčková, Hana; Elster, Josef; Kaštovská, Eva

2018-03-01

The unique and fragile High Arctic ecosystems are vulnerable to global climate warming. The elucidation of factors driving microbial distribution and activity in arctic soils is essential for a comprehensive understanding of ecosystem functioning and its response to environmental change. The goals of this study were to investigate microbial biomass and activity, microbial community structure (MCS), and their environmental controls in soils along three elevational transects in the coastal mountains of Billefjorden, central Svalbard. Soils from four different altitudes (25, 275, 525 and 765 m above sea level) were analyzed for a suite of characteristics including temperature regimes, organic matter content, base cation availability, moisture, pH, potential respiration, and microbial biomass and community structure using phospholipid fatty acids (PLFAs). We observed significant spatial heterogeneity of edaphic properties among transects, resulting in transect-specific effects of altitude on most soil parameters. We did not observe any clear elevation pattern in microbial biomass, and microbial activity revealed contrasting elevational patterns between transects. We found relatively large horizontal variability in MCS (i.e., between sites of corresponding elevation in different transects), mainly due to differences in the composition of bacterial PLFAs, but also a systematic altitudinal shift in MCS related to different habitat preferences of fungi and bacteria, which resulted in high fungi-to-bacteria ratios at the most elevated sites. The biological soil crusts on these most elevated, unvegetated sites can host microbial assemblages of a size and activity comparable to those of the arctic tundra ecosystem. The key environmental factors determining horizontal and vertical changes in soil microbial properties were soil pH, organic carbon content, soil moisture and Mg2+ availability.

The effects of nicotine exposure and PFC transection on the time-frequency distribution of VTA DA neurons' firing activities.

PubMed

Chen, Ting Y; Zhang, Die; Dragomir, Andrei; Akay, Yasemin; Akay, Metin

2011-05-01

We investigated the influence of nicotine exposure and prefrontal cortex (PFC) transections on ventral tegmental areas (VTA) dopamine (DA) neurons' firing activities using a time-frequency method based on the continuous wavelet transform (CWT). Extracellular single-unit neural activity was recorded from DA neurons in the VTA area of rats. One group had their PFC inputs to the VTA intact, while the other group had the inputs to VTA bilaterally transected immediate caudal to the PFC. We hypothesized that the systemic nicotine exposure will significantly change the energy distribution in the recorded neural activity. Additionally, we investigated whether the loss of inputs to the VTA caused by the PFC transection resulted in the cancellation of the nicotine' effect on the neurons' firing patterns. The time-frequency representations of VTA DA neurons firing activity were estimated from the reconstructed firing rate histogram. The energy contents were estimated from three frequency bands, which are known to encompass the significant modes of operation of DA neurons. Our results show that systemic nicotine exposure disrupts the energy distribution in PFC-intact rats. Particularly, there is a significant increase in energy contents of the 1-1.5 Hz frequency band. This corresponds to an observed increase in the firing rate of VTA DA neurons following nicotine exposure. Additionally, our results from PFC-transected rats show that there is no change in the energy distribution of the recordings after systemic nicotine exposure. These results indicate that the PFC plays an important role in affecting the activities of VTA DA neurons and that the CWT is a useful method for monitoring the changes in neural activity patterns in both time and frequency domains.

Numerical simulations to assess the tracer dilution method for measurement of landfill methane emissions.

PubMed

Taylor, Diane M; Chow, Fotini K; Delkash, Madjid; Imhoff, Paul T

2016-10-01

Landfills are a significant contributor to anthropogenic methane emissions, but measuring these emissions can be challenging. This work uses numerical simulations to assess the accuracy of the tracer dilution method, which is used to estimate landfill emissions. Atmospheric dispersion simulations with the Weather Research and Forecast model (WRF) are run over Sandtown Landfill in Delaware, USA, using observation data to validate the meteorological model output. A steady landfill methane emissions rate is used in the model, and methane and tracer gas concentrations are collected along various transects downwind from the landfill for use in the tracer dilution method. The calculated methane emissions are compared to the methane emissions rate used in the model to find the percent error of the tracer dilution method for each simulation. The roles of different factors are examined: measurement distance from the landfill, transect angle relative to the wind direction, speed of the transect vehicle, tracer placement relative to the hot spot of methane emissions, complexity of topography, and wind direction. Results show that percent error generally decreases with distance from the landfill, where the tracer and methane plumes become well mixed. Tracer placement has the largest effect on percent error, and topography and wind direction both have significant effects, with measurement errors ranging from -12% to 42% over all simulations. Transect angle and transect speed have small to negligible effects on the accuracy of the tracer dilution method. These tracer dilution method simulations provide insight into measurement errors that might occur in the field, enhance understanding of the method's limitations, and aid interpretation of field data. Copyright © 2016 Elsevier Ltd. All rights reserved.

Correlation of prostaglandin E2 concentrations in synovial fluid with ground reaction forces and clinical variables for pain or inflammation in dogs with osteoarthritis induced by transection of the cranial cruciate ligament.

PubMed

Trumble, Troy N; Billinghurst, R Clark; McIlwraith, C Wayne

2004-09-01

To evaluate the temporal pattern of prostaglandin (PG) E2 concentrations in synovial fluid after transection of the cranial cruciate ligament (CCL) in dogs and to correlate PGE2 concentrations with ground reaction forces and subjective clinical variables for lameness or pain. 19 purpose-bred adult male Walker Hounds. Force plate measurements, subjective clinical analysis of pain or lameness, and samples of synovial fluid were obtained before (baseline) and at various time points after arthroscopic transection of the right CCL. Concentrations of PGE2 were measured in synovial fluid samples, and the PGE2 concentrations were correlated with ground reaction forces and clinical variables. The PGE2 concentration increased significantly above the baseline value throughout the entire study, peaking 14 days after transection. Peak vertical force and vertical impulse significantly decreased by day 14 after transection, followed by an increase over time without returning to baseline values. All clinical variables (eg, lameness, degree of weight bearing, joint extension, cumulative pain score, effusion score, and total protein content of synovial fluid, except for WBC count in synovial fluid) increased significantly above baseline values. Significant negative correlations were detected between PGE2 concentrations and peak vertical force (r, -0.5720) and vertical impulse (r, -0.4618), and significant positive correlations were detected between PGE2 concentrations and the subjective lameness score (r, 0.5016) and effusion score (r, 0.6817). Assessment of the acute inflammatory process by measurement of PGE2 concentrations in synovial fluid may be correlated with the amount of pain or lameness in dogs.

Humidification of the Arctic: Effects of more open ocean water on land temperatures and tundra productivity along continental and maritime bioclimate transects

NASA Astrophysics Data System (ADS)

Bhatt, U. S.; Walker, D. A.; Raynolds, M. K.; Epstein, H. E.

2017-12-01

Amplified Arctic warming linked to declining sea-ice extent led to generally enhanced productivity of the tundra biome during the period 1982-2008. After about 2002, coinciding with a recent precipitous decline in sea ice, large areas of the Arctic began showing reversals of previous positive productivity trends. To better understand these recent vegetation productivity declines and whether they are associated with differences in a general humidification of portions of the Arctic, we focus analysis on two transects with ground information: the more continental North America Arctic Transect (NAAT) and the more maritime Eurasia Arctic Transect (EAT). We compare ground information with satellite-derived trends in open water, summer terrestrial temperatures, and vegetation greenness and changes in continentality of the two transects, as indicated by the differences in the annual maximum and minimum mean monthly temperatures. Areas adjacent to perennial sea ice along in the northern parts of the NAAT exhibit climates with positive trends in summer warmth, but negative greening trends, possibly due to soil drying. Southern parts of the NAAT in the vicinity of more open water show positive greenness trends. Along the EAT, cooling midsummer conditions and reduced greenness appear to be caused by cloudier conditions, and possibly later snow melt during the period of maximum potential photosynthesis. Ground-based environmental and vegetation data indicate that biomass, particularly moss biomass is much greater along the more maritime EAT, indicating a buffering effect of the vegetation that will act to damp productivity as humidification of the Arctic proceeds. This multi-scale analysis is one step in the direction of understanding the drivers of tundra vegetation productivity in the Arctic.

There is no temperature dependence of net biochemical fractionation of hydrogen and oxygen isotopes in tree-ring cellulose.

PubMed

Roden, J S; Ehleringer, J R

2000-01-01

The isotopic composition of tree-ring cellulose was obtained over a two-year period from small diameter, riparian zone trees along an elevational transect in Big Cottonwood Canyon, Utah, USA to test for a possible temperature dependence of net biological fractionation during cellulose synthesis. The isotope ratios of stream water varied by only 3.6% and 0.2% in deltaD and delta18O, respectively, over an elevation change of 810m. The similarity in stream water and macroenvironment over the short (13km) transect produced nearly constant stem and leaf water deltaD and delta18O values. In addition, what few seasonal variations observed in the isotopic composition of source water and atmospheric water vapor or in leaf water evaporative enrichment were experienced equally by all sites along the elevational transect. The temperature at each site along the transect spanned a range of > or = 5 degrees C as calculated using the adiabatic lapse rate. Since the deltaD and delta18O values of stem and leaf water varied little for these trees over this elevation/temperature transect, any differences in tree-ring cellulose deltaD and delta18O values should have been associated with temperature effects on net biological fractionation. However, the slopes of the regressions of elevation versus the deltaD and delta18O values of tree-ring cellulose were not significantly different from zero indicating little or no temperature dependence of net biological fractionation. Therefore, cross-site climatic reconstruction studies using the isotope ratios of cellulose need not be concerned that temperatures during the growing season have influenced results.

Overlap in offshore habitat use by double-crested cormorants and boaters in western Lake Erie

USGS Publications Warehouse

Stapanian, Martin A.; Bur, Michael T.

2002-01-01

Double-crested cormorants (Phalacrocorax auritus) and boats of 2 length classes (≤ 8 m and > 8 m) were counted from a boat along 31 established strip transects in western Lake Erie from 24 April to 1 September 2000. Each transect included only one of the following habitats: (1) offshore of a breeding island or roosting/loafing area for cormorants (“refuge”), (2) reefs or shoals, (3) open water, or (4) offshore of an island shoreline that had evidence of development by humans. Foraging cormorants were recorded most often offshore of refuges and least often on open water. There was no difference between the numbers of foraging cormorants/km2 recorded offshore of developed shorelines and on reefs and shoals. More than half of all boats recorded were on transects that were within 1 km of developed shorelines. Among those transects > 1 km from developed shorelines, there were no differences among the habitats for the number of boats of either length class. The respective ranks of the 31 transect means of the numbers of cormorants/km2 and the numbers of boats/km2 in either length class were uncorrelated. The results suggest that (1) cormorants select foraging habitats based mainly on shoreline type, distance from shoreline, and depth, and (2) the amount of boat traffic is influenced by proximity to port and trip objectives, including sport angling and recreational boating. Although there is overlap in habitat use by cormorants and humans, this overlap is not complete. The perception of cormorants as a threat to fish populations may in part be due to this overlap.

Exploring the Biotic Pump Hypothesis along Non-linear Transects in Tropical South America

NASA Astrophysics Data System (ADS)

Molina, R.; Bettin, D. M.; Salazar, J. F.; Villegas, J. C.

2014-12-01

Forests might actively transport atmospheric moisture from the oceans, according to the biotic pump of atmospheric moisture (BiPAM) hypothesis. The BiPAM hypothesis appears to be supported by the fact that precipitation drops exponentially with distance from ocean along non-forested land transects, but not on their forested counterparts. Yet researchers have discussed the difficulty in defining proper transects for BiPAM studies. Previous studies calculate precipitation gradients either along linear transects maximizing distance to the ocean, or along polylines following specific atmospheric pathways (e.g., aerial rivers). In this study we analyzed precipitation gradients along curvilinear streamlines of wind in tropical South America. Wind streamlines were computed using long-term quarterly averages of meridional and zonal wind components from the ERA-Interim and NCEP/NCAR reanalyses. Total precipitation along streamlines was obtained from four data sources: TRMM, UDEL, ERA-Interim, and NCEP/NCAR. Precipitation on land versus distance from the ocean was analyzed along selected streamlines for each data source. As predicted by BiPAM, precipitation gradients did not decrease exponentially along streamlines in the vicinity of the Amazon forest, but dropped rapidly as distance from the forest increased. Remarkably, precipitation along streamlines in some areas outside the Amazon forest did not decrease exponentially either. This was possibly owing to convergence of moisture conveyed by low level jets (LLJs) in those areas (e.g., streamlines driven by the Caribbean and CHOCO jets on the Pacific coast of Colombia). Significantly, BiPAM held true even along long transects displaying strong sinuosity. In fact, the general conclusions of previous studies remain valid. Yet effects of LLJs on precipitation gradients need to be thoroughly considered in future BiPAM studies.

Disturbance of Dabao highway construction on plant species and soil nutrients in Longitudinal Range Gorge Region (LRGR) of Southwestern China.

PubMed

Cui, Baoshan; Zhao, Shuqing; Zhang, Kejiang; Li, Shaocai; Dong, Shikui; Bai, Junhong

2009-11-01

The disturbance of highway construction upon surrounding vulnerable ecosystems is a common threat in the Longitudinal Range Gorge Region of southwestern China. We evaluated the disturbance of highway on plant species richness and diversity and soil nutrients from adjacent to the highway to 300 m upslope and 100 m downslope in forests and grasslands by setting 12 belt transects in forests and grasslands (six belt transects and six control belt transects, respectively). The results showed that there were some significant variances in belt transects with respective control belt transects for species richness and diversity in both forests and grasslands. Species richness and diversity of trees were lower within a 50-m distance from the highway and more noticeable on the downslope portion. Species richness and diversity of shrubs and herbs appeared higher near highway edge. Both species richness and diversity of herbs were similar in forests. In addition, exotic species, such as Eupatorium adenophorum, were further from the road and more widely dispersed in grasslands. Soil nutrients except total potassium (TK) were lower in the downslope area adjacent to highway edge and showed a significant increase with increasing distance from the highway in both forests and grasslands. This indicates that grasslands acted as microhabitats for exotic species and are more easily to be invaded than forests, especially if disturbed. Once destroyed, plant species and soil nutrients will require a significant amount of time to be restored to control levels. This work illustrates that the effects extend considerably to distances upslope and downslope from the construction site. Given that these changes occurred relatively quickly, the study suggests that the environmental "footprint" grows far beyond the road and adjacent zone of disruption.

Examining patterns of bat activity in Bandelier National Monument, New Mexico, using walking point transects

USGS Publications Warehouse

Ellison, L.E.; Everette, A.L.; Bogan, M.A.

2005-01-01

We conducted a preliminary study using small field crews, a single Anabat II detector coupled with a laptop computer, and point transects to examine patterns of bat activity at a scale of interest to local resource managers. The study was conducted during summers of 1996–1998 in Bandelier National Monument in the Jemez Mountains of northern New Mexico, a landscape with distinct vegetation zones and high species richness of bats. We developed simple models that described general patterns of acoustic activity within 4 vegetation zones based primarily on nightly variation and a qualitative index of habitat complexity. Bat acoustic activity (number of bat passes&sol point) did not vary dramatically among a limited sample of transects within a vegetation zone during 1996. In 1997 and 1998, single transects within each vegetation zone were established, and bat activity did not vary annually within these zones. Acoustic activity differed among the 4 vegetation zones of interest, with the greatest activity occurring in riparian canyon bottomland, intermediate activity in coniferous forest and a 1977 burned zone, and lowest activity in piñon-juniper woodlands. We identified 68.5% of 2,529 bat passes recorded during point-transect surveys to species using an echolocation call reference library we established for the area and qualitative characteristics of bat calls. Bat species richness and composition differed among vegetation zones. Results of these efforts were consistent with general knowledge of where different bat species typically forage and with the natural history of bats of New Mexico, suggesting such a method might have value for drawing inferences about bat activity in different vegetation zones.

Transection versus preservation of the neurovascular bundle of the lesser omentum in primary Roux-en-Y gastric bypass surgery.

PubMed

van Wezenbeek, Martin R; van Oudheusden, Thijs R; Smulders, J Frans; Nienhuijs, Simon W; Luyer, Misha D

2016-02-01

A gastric pouch in Roux-en-Y gastric bypass (RYGB) surgery can be created after transection of the perigastric neurovascular bundle or by preserving these structures. Some surgeons choose to transect the neurovascular bundle (NBT), containing branches of the vagus nerve, because this might be related to additional weight loss, whereas others advocate preservation (NBP) to reduce postoperative complications. This study assessed the effect of both techniques after primary RYGB. All patients undergoing primary RYGB in a large bariatric center in the Netherlands between January 2010 and December 2013 were included. Patient demographic characteristics, operative details, postoperative complications and weight loss after 1 year were retrospectively analyzed. A total of 773 consecutive patients were included (85.5% female). NBT was performed in 407 patients (52.7%), whereas NBP was performed in 366 patients. There were no missing data and 81.2% of patients completed the 1-year follow-up. Postoperative complications were found in 66 patients (8.5%). A total of 49 patients (6.3%) either had an anastomotic leakage, postoperative bleeding, or intraabdominal abscess (NBT 8.8% versus NBP 3.6%, P = .003). Percentage total weight loss (NBT 34.5%±6.9% versus NBP 33.4%±6.9%; P = .011) differed to a lesser extent between groups, although this was significant. Neurovascular bundle transection was identified as independent factor among others for occurrence of leakage, bleeding, and abscess development (OR 2.886; 95% CI [1.466-5.683]; P = .002). Transection of the neurovascular bundle in RYGB is associated with more complications. Furthermore, weight loss is not relevantly increased. Further research is necessitated to substantiate these findings. Copyright © 2016 American Society for Bariatric Surgery. Published by Elsevier Inc. All rights reserved.

VGLUT1 and VGLUT2 innervation in autonomic regions of intact and transected rat spinal cord.

PubMed

Llewellyn-Smith, Ida J; Martin, Carolyn L; Fenwick, Natalie M; Dicarlo, Stephen E; Lujan, Heidi L; Schreihofer, Ann M

2007-08-20

Fast excitatory neurotransmission to sympathetic and parasympathetic preganglionic neurons (SPN and PPN) is glutamatergic. To characterize this innervation in spinal autonomic regions, we localized immunoreactivity for vesicular glutamate transporters (VGLUTs) 1 and 2 in intact cords and after upper thoracic complete transections. Preganglionic neurons were retrogradely labeled by intraperitoneal Fluoro-Gold or with cholera toxin B (CTB) from superior cervical, celiac, or major pelvic ganglia or adrenal medulla. Glutamatergic somata were localized with in situ hybridization for VGLUT mRNA. In intact cords, all autonomic areas contained abundant VGLUT2-immunoreactive axons and synapses. CTB-immunoreactive SPN and PPN received many close appositions from VGLUT2-immunoreactive axons. VGLUT2-immunoreactive synapses occurred on Fluoro-Gold-labeled SPN. Somata with VGLUT2 mRNA occurred throughout the spinal gray matter. VGLUT2 immunoreactivity was not noticeably affected caudal to a transection. In contrast, in intact cords, VGLUT1-immunoreactive axons were sparse in the intermediolateral cell column (IML) and lumbosacral parasympathetic nucleus but moderately dense above the central canal. VGLUT1-immunoreactive close appositions were rare on SPN in the IML and the central autonomic area and on PPN. Transection reduced the density of VGLUT1-immunoreactive axons in sympathetic subnuclei but increased their density in the parasympathetic nucleus. Neuronal cell bodies with VGLUT1 mRNA occurred only in Clarke's column. These data indicate that SPN and PPN are densely innervated by VGLUT2-immunoreactive axons, some of which arise from spinal neurons. In contrast, the VGLUT1-immunoreactive innervation of spinal preganglionic neurons is sparse, and some may arise from supraspinal sources. Increased VGLUT1 immunoreactivity after transection may correlate with increased glutamatergic transmission to PPN. (c) 2007 Wiley-Liss, Inc.

In Situ Trace Element Analysis of an Allende Type B1 CAI: EK-459-5-1

NASA Technical Reports Server (NTRS)

Jeffcoat, C. R.; Kerekgyarto, A.; Lapen, T. J.; Andreasen, R.; Righter, M.; Ross, D. K.

2014-01-01

Variations in refractory major and trace element composition of calcium, aluminum-rich inclusions (CAIs) provide constraints on physical and chemical conditions and processes in the earliest stages of the Solar System. Previous work indicates that CAIs have experienced complex histories involving, in many cases, multiple episodes of condensation, evaporation, and partial melting. We have analyzed major and trace element abundances in two core to rim transects of the melilite mantle as well as interior major phases of a Type B1 CAI (EK-459-5-1) from Allende by electron probe micro-analyzer (EPMA) and laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) to investigate the behavior of key trace elements with a primary focus on the REEs Tm and Yb.

Demonstration of line transect methodologies to estimate urban gray squirrel density

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hein, E.W.

1997-11-01

Because studies estimating density of gray squirrels (Sciurus carolinensis) have been labor intensive and costly, I demonstrate the use of line transect surveys to estimate gray squirrel density and determine the costs of conducting surveys to achieve precise estimates. Density estimates are based on four transacts that were surveyed five times from 30 June to 9 July 1994. Using the program DISTANCE, I estimated there were 4.7 (95% Cl = 1.86-11.92) gray squirrels/ha on the Clemson University campus. Eleven additional surveys would have decreased the percent coefficient of variation from 30% to 20% and would have cost approximately $114. Estimatingmore » urban gray squirrel density using line transect surveys is cost effective and can provide unbiased estimates of density, provided that none of the assumptions of distance sampling theory are violated.« less

Demonstration of pelvic anatomy by modified midline transection that maintains intact internal pelvic organs.

PubMed

Steinke, Hanno; Saito, Toshiyuki; Herrmann, Gudrun; Miyaki, Takayoshi; Hammer, Niels; Sandrock, Mara; Itoh, Masahiro; Spanel-Borowski, Katharina

2010-01-01

Gross dissection for demonstrating anatomy of the human pelvis has traditionally involved one of two approaches, each with advantages and disadvantages. Classic hemisection in the median plane through the pelvic ring transects the visceral organs but maintains two symmetric pelvic halves. An alternative paramedial transection compromises one side of the bony pelvis but leaves the internal organs intact. The authors propose a modified technique that combines advantages of both classical dissections. This novel approach involves dividing the pubic symphysis and sacrum in the median plane after shifting all internal organs to one side. The hemipelvis without internal organs is immediately available for further dissection of the lower limb. The hemipelvis with intact internal organs is ideal for showing the complex spatial relationships of the pelvic organs and vessels relative to the intact pelvic floor.

Neodymium:YAG laser cutting of intraocular lens haptics in vitro and in vivo.

PubMed

Feder, J M; Rosenberg, M A; Farber, M D

1989-09-01

Various complications following intraocular lens (IOL) surgery result in explantation of the lenses. Haptic fibrosis may necessitate cutting the IOL haptics prior to removal. In this study we used the neodymium: YAG (Nd:YAG) laser to cut polypropylene and poly(methyl methacrylate) (PMMA) haptics in vitro and in rabbit eyes. In vitro we were able to cut 100% of both haptic types successfully (28 PMMA and 30 polypropylene haptics). In rabbit eyes we were able to cut 50% of the PMMA haptics and 43% of the polypropylene haptics. Poly(methyl methacrylate) haptics were easier to cut in vitro and in vivo than polypropylene haptics, requiring fewer shots for transection. Complications of Nd:YAG laser use frequently interfered with haptic transections in rabbit eyes. Haptic transection may be more easily accomplished in human eyes.

A retracting wire knife for cutting fiber bundles and making sheet lesions of brain tissue.

PubMed

Shibata, M; Russell, I S

1979-07-01

A retracting knife which has two cutting wires for the transection of fiber bundles is described. The knife holds the fiber bundles of the stria terminalis between the two cutting wires and transects them by a shearing movement as the wires close. In addition, the feasability of such a knife producing a sheet lesion around the n. caudatus is also described.

Transection of Nasolacrimal Duct in Endoscopic Medial Maxillectomy: Implication on Epiphora.

PubMed

Imre, Abdulkadir; Imre, Seher Saritepe; Pinar, Ercan; Ozkul, Yilmaz; Songu, Murat; Ece, Ahmet Ata; Aladag, Ibrahim

2015-10-01

Management of the nasolacrimal system is usually recommended during medial maxillectomy via external approach because of reported higher rates of postoperative epiphora. Association of the endoscopic medial maxillectomy (EMM) with epiphora, however, is not clearly stated. In this study, we attempted to evaluate whether patients develop epiphora after simple transection of the nasolacrimal duct during EMM. Medical records of 26 patients who underwent endoscopic tumor resection for inverted papilloma (IP) were retrospectively reviewed. Patients who underwent EMM with nasolacrimal canal transection were included and recalled for lacrimal system evaluation. Twelve patients were eligible for inclusion and fluorescein dye disappearance test (FDDT) was performed for each patient. Patient demographics, tumor data, surgical procedures, and follow-up time were recorded. Of the 12 patients included in the study, 6 underwent canine fossa transantral approach concurrently with EMM. The mean duration of follow-up was 21.1 months (range, 6-84 months). Eight patients were graded as 0, whereas 4 patients were graded as 1 according to FDDT. All test results were interpreted as negative for epiphora. All patients were completely symptom free of epiphora. Epiphora after EMM with nasolacrimal canal transection among patients with sinonasal tumors appears to be uncommon. Therefore, prophylactic concurrent management of nasolacrimal system including stenting, dacryocystorhinostomy (DCR), or postoperative lacrimal lavage are not mandatory for all patients.

Wildfires Dynamics in Siberian Larch Forests

NASA Technical Reports Server (NTRS)

Ponomarev, Evgenii I.; Kharuk, Viacheslav I.; Ranson, Kenneth J.

2016-01-01

Wildfire number and burned area temporal dynamics within all of Siberia and along a south-north transect in central Siberia (45deg-73degN) were studied based on NOAA/AVHRR (National Oceanic and Atmospheric Administration/ Advanced Very High Resolution Radiometer) and Terra/MODIS (Moderate Resolution Imaging Spectroradiometer) data and field measurements for the period 1996-2015. In addition, fire return interval (FRI) along the south-north transect was analyzed. Both the number of forest fires and the size of the burned area increased during recent decades (p < 0.05). Significant correlations were found between forest fires, burned areas and air temperature (r = 0.5) and drought index (The Standardized Precipitation Evapotranspiration Index, SPEI) (r = 0.43). Within larch stands along the transect, wildfire frequency was strongly correlated with incoming solar radiation (r = 0.91). Fire danger period length decreased linearly from south to north along the transect. Fire return interval increased from 80 years at 62 N to 200 years at the Arctic Circle (6633' N), and to about 300 years near the northern limit of closed forest stands (about 71+ N). That increase was negatively correlated with incoming solar radiation (r = 0.95). Keywords: wildfires; drought index; larch stands; fire return interval; fire frequency; burned area; climate-induced trends in Siberian wildfires

Detection and distribution of Tris(2-chloroethyl) phosphate on the East Antarctic ice sheet.

PubMed

Cheng, Wenhan; Sun, Liguang; Huang, Wen; Ruan, Ting; Xie, Zhouqing; Zhang, Pengfei; Ding, Rui; Li, Ming

2013-08-01

Use of PBDEs (Polybrominated Diphenyl Ethers) has been restricted in Europe and North America in recent years. As substitute products with similar properties, OPEs (Organophosphate Esters) are now used as alternatives to PBDEs. Recent research has revealed that, similar to PBDEs, OPEs are also environmentally hazardous like PBDEs. Thus knowledge of their distribution and transport is needed to understand the extent of risk. However, studies on environmental OPEs mainly focus on Europe and North America. Knowledge in the southern hemisphere is very limited. In this study, we analyzed fresh snow samples collected along the transect from Zhongshan Station to Kunlun Station, East Antarctica. Several OPEs were detected in this transect, among which Tris(2-chloroethyl) phosphate (TCEP) had the highest frequency of quantification. It was quantified in most samples from the coastal half of the transect and was detected but not quantified in most samples in the inland half. We show that TCEP at this transect probably originated from the ocean around Antarctica. This study is the first to report the presence of TCEP on the Antarctica ice sheet, providing evidence of its long range transport from the source regions. This work also indicate that TCEP can transport hundreds of kilometers in the Antarctica. Copyright © 2013 Elsevier Ltd. All rights reserved.

Namib Desert Soil Microbial Community Diversity, Assembly, and Function Along a Natural Xeric Gradient.

PubMed

Scola, Vincent; Ramond, Jean-Baptiste; Frossard, Aline; Zablocki, Olivier; Adriaenssens, Evelien M; Johnson, Riegardt M; Seely, Mary; Cowan, Don A

2018-01-01

The hyperarid Namib desert is a coastal desert in southwestern Africa and one of the oldest and driest deserts on the planet. It is characterized by a west/east increasing precipitation gradient and by regular coastal fog events (extending up to 75 km inland) that can also provide soil moisture. In this study, we evaluated the role of this natural aridity and xeric gradient on edaphic microbial community structure and function in the Namib desert. A total of 80 individual soil samples were collected at 10-km intervals along a 190-km transect from the fog-dominated western coastal region to the eastern desert boundary. Seventeen physicochemical parameters were measured for each soil sample. Soil parameters reflected the three a priori defined climatic/xeric zones along the transect ("fog," "low rain," and "high rain"). Microbial community structures were characterized by terminal restriction fragment length polymorphism fingerprinting and shotgun metaviromics, and their functional capacities were determined by extracellular enzyme activity assays. Both microbial community structures and activities differed significantly between the three xeric zones. The deep sequencing of surface soil metavirome libraries also showed shifts in viral composition along the xeric transect. While bacterial community assembly was influenced by soil chemistry and stochasticity along the transect, variations in community "function" were apparently tuned by xeric stress.

Intra-annual seasonal variability of surface zooplankton distribution patterns along a 110°E transect of the Southern Ocean in the austral summer of 2011/12

NASA Astrophysics Data System (ADS)

Takahashi, Kunio T.; Hosie, Graham W.; Odate, Tsuneo

2017-06-01

Seasonal cycles can provide insight into the interactions between zooplankton and the environment. However, few intra-annual seasonal studies have been undertaken in the Southern Ocean. We investigated the composition, distribution, and abundance of micro- and meso-zooplankton along the 110°E meridian with three transects in December 2011, January and March 2012 using a Continuous Plankton Recorder. High zooplankton abundance was recorded in the Polar Frontal Zone (PFZ) and the Antarctic Zone (AZ) in both day and night at all transects with 179.0-300.9 ind. m-3. The small copepods Oithona similis, Ctenocalanus citer, and copepodites indet (copepod indeterminable) were dominant in the PFZ and AZ communities. Total zooplankton abundance was comparatively consistent among transects. Nighttime abundance levels remained high in the AZ in March with high abundance of copepodites indet. This seasonal fluctuation appeared to be influenced by recruitment of new populations. Most core species/taxa, except for O. similis, C. citer, and foraminiferans in the AZ area in early January, exhibited a diel decrease in abundance. A multi-ship intra-annual seasonal survey will help detect their various regional and/or seasonal distribution patterns, and the impacts of environmental change on Southern Ocean pelagic ecosystems.

Can the mammalian lumbar spinal cord learn a motor task?

PubMed

Hodgson, J A; Roy, R R; de Leon, R; Dobkin, B; Edgerton, V R

1994-12-01

Progress toward restoring locomotor function in low thoracic spinal transected cats and the application of similar techniques to patients with spinal cord injury is reviewed. Complete spinal cord transection (T12-T13) in adult cats results in an immediate loss of locomotor function in the hindlimbs. Limited locomotor function returns after several months in cats that have not received specific therapies designed to restore hindlimb stepping. Training transected cats to step on a treadmill for 30 min.d-1 and 5 d.wk-1 greatly improves their stepping ability. The most successful outcome was in cats where training began early, i.e., 1 wk after spinal transection. Cats trained to stand instead of stepping had great difficulty using the hindlimbs for locomotion. These effects were reversible over a 20-month period such that cats unable to step as a result of standing training could be trained to step and, conversely, locomotion in stepping-trained cats could be abolished by standing training. These results indicate that the spinal cord is capable of learning specific motor tasks. It has not been possible to elicit locomotion in patients with clinically complete spinal injuries, but appropriately coordinated EMG activity has been demonstrated in musculature of the legs during assisted locomotion on a treadmill.

Polyethylene glycol-induced motor recovery after total spinal transection in rats.

PubMed

Ren, Shuai; Liu, Ze-Han; Wu, Qiong; Fu, Kuang; Wu, Jun; Hou, Li-Ting; Li, Ming; Zhao, Xin; Miao, Qing; Zhao, Yun-Long; Wang, Sheng-Yu; Xue, Yan; Xue, Zhen; Guo, Ya-Shan; Canavero, Sergio; Ren, Xiao-Ping

2017-08-01

Despite more than a century of research, spinal paralysis remains untreatable via biological means. A new understanding of spinal cord physiology and the introduction of membrane fusogens have provided new hope that a biological cure may soon become available. However, proof is needed from adequately powered animal studies. Two groups of rats (n=9, study group, n=6 controls) were submitted to complete transection of the dorsal cord at T10. The animals were randomized to receive either saline or polyethylene glycol (PEG) in situ. After 4 weeks, the treated group had recovered ambulation vs none in the control group (BBB scores; P=.0145). One control died. All animals were studied with somatosensory-evoked potentials (SSEP) and diffusion tensor imaging (DTI). SSEP recovered postoperatively only in PEG-treated rats. At study end, DTI showed disappearance of the transection gap in the treated animals vs an enduring gap in controls (fractional anisotropy/FA at level: P=.0008). We show for the first time in an adequately powered study that the paralysis attendant to a complete transection of the spinal cord can be reversed. This opens the path to a severance-reapposition cure of spinal paralysis, in which the injured segment is excised and the two stumps approximated after vertebrectomy/diskectomies. © 2017 John Wiley & Sons Ltd.

Statistical methods for identifying and bounding a UXO target area or minefield

DOE Office of Scientific and Technical Information (OSTI.GOV)

McKinstry, Craig A.; Pulsipher, Brent A.; Gilbert, Richard O.

2003-09-18

The sampling unit for minefield or UXO area characterization is typically represented by a geographical block or transect swath that lends itself to characterization by geophysical instrumentation such as mobile sensor arrays. New spatially based statistical survey methods and tools, more appropriate for these unique sampling units have been developed and implemented at PNNL (Visual Sample Plan software, ver. 2.0) with support from the US Department of Defense. Though originally developed to support UXO detection and removal efforts, these tools may also be used in current form or adapted to support demining efforts and aid in the development of newmore » sensors and detection technologies by explicitly incorporating both sampling and detection error in performance assessments. These tools may be used to (1) determine transect designs for detecting and bounding target areas of critical size, shape, and density of detectable items of interest with a specified confidence probability, (2) evaluate the probability that target areas of a specified size, shape and density have not been missed by a systematic or meandering transect survey, and (3) support post-removal verification by calculating the number of transects required to achieve a specified confidence probability that no UXO or mines have been missed.« less

Evaluation of experimental transection and partial excision of the caudal cruciate ligament in dogs.

PubMed

Harari, J; Johnson, A L; Stein, L E; Kneller, S K; Pijanowski, G

1987-01-01

The caudal cruciate ligament (CaCL) of one stifle joint in seven dogs was transected and a 2 to 4 mm section was removed. Six months after surgery, none of the dogs were lame. Thigh muscle circumference, stifle range of motion, and internal tibial rotation in the operated limb were not significantly different from the preoperative measurements or the contralateral, unoperated limb. A caudal drawer motion was consistently present in the stifle joints with a transected CaCL. A radiographic evaluation of the operated stifle joints did not reveal osteoarthritic changes; four of seven stifle joints had an irregular fat pad 6 months after surgery. Results of a joint fluid analysis revealed a slight increase in synovial cells within treated stifle joints; inflammatory cells were not observed. The only gross morphologic change in stifle joints with a severed ligament was enlarged knobby remnants of the CaCL. Articular cartilage defects or osteophytes were not observed. Results of a histologic examination of the CaCL remnants revealed synovial cellular capping and intraligamentous fibroplasia. Based on a limited number of dogs, it was concluded that isolated transection of the CaCL produced minimal clinical and pathologic changes in the stifle joint during a 6 month period.

Application of the AMBUR R package for spatio-temporal analysis of shoreline change: Jekyll Island, Georgia, USA

NASA Astrophysics Data System (ADS)

Jackson, Chester W.; Alexander, Clark R.; Bush, David M.

2012-04-01

The AMBUR (Analyzing Moving Boundaries Using R) package for the R software environment provides a collection of functions for assisting with analyzing and visualizing historical shoreline change. The package allows import and export of geospatial data in ESRI shapefile format, which is compatible with most commercial and open-source GIS software. The "baseline and transect" method is the primary technique used to quantify distances and rates of shoreline movement, and to detect classification changes across time. Along with the traditional "perpendicular" transect method, two new transect methods, "near" and "filtered," assist with quantifying changes along curved shorelines that are problematic for perpendicular transect methods. Output from the analyses includes data tables, graphics, and geospatial data, which are useful in rapidly assessing trends and potential errors in the dataset. A forecasting function also allows the user to estimate the future location of the shoreline and store the results in a shapefile. Other utilities and tools provided in the package assist with preparing and manipulating geospatial data, error checking, and generating supporting graphics and shapefiles. The package can be customized to perform additional statistical, graphical, and geospatial functions, and, it is capable of analyzing the movement of any boundary (e.g., shorelines, glacier terminus, fire edge, and marine and terrestrial ecozones).

Complete spinal cord injury and brain dissection protocol for subsequent wholemount in situ hybridization in larval sea lamprey.

PubMed

Barreiro-Iglesias, Antón; Zhang, Guixin; Selzer, Michael E; Shifman, Michael I

2014-10-14

After a complete spinal cord injury, sea lampreys at first are paralyzed below the level of transection. However, they recover locomotion after several weeks, and this is accompanied by short distance regeneration (a few mm) of propriospinal axons and spinal-projecting axons from the brainstem. Among the 36 large identifiable spinal-projecting neurons, some are good regenerators and others are bad regenerators. These neurons can most easily be identified in wholemount CNS preparations. In order to understand the neuron-intrinsic mechanisms that favor or inhibit axon regeneration after injury in the vertebrates CNS, we determine differences in gene expression between the good and bad regenerators, and how expression is influenced by spinal cord transection. This paper illustrates the techniques for housing larval and recently transformed adult sea lampreys in fresh water tanks, producing complete spinal cord transections under microscopic vision, and preparing brain and spinal cord wholemounts for in situ hybridization. Briefly, animals are kept at 16°C and anesthetized in 1% Benzocaine in lamprey Ringer. The spinal cord is transected with iridectomy scissors via a dorsal approach and the animal is allowed to recover in fresh water tanks at 23 °C. For in situ hybridization, animals are reanesthetized and the brain and cord removed via a dorsal approach.

Geodynamic evolution of the Taiwan-Luzon-Mindoro belt since the late eocene

NASA Astrophysics Data System (ADS)

Stephan, Jean François; Blanchet, René; Rangin, Claude; Pelletier, Bernard; Letouzey, Jean; Muller, Carla

1986-05-01

The structural framework of the Taiwan-Luzon-Mindoro belt (or festoon) is described, following three major transects: the Luzon transect with active subduction and active island arc; the Taiwan transect with active collision; the Mindoro transect with active subduction and inactive collision. Based on this geological study and on available geophysical data, a model for the geodynamic evolution of this portion of the Philippine Sea and Eurasia Plates boundary is proposed in a succession of reconstructions between the Late Eocene and the Present. The major geodynamic events are: (1) beginning of the opening of the South China Sea (S.C.S.) in Lower Oligocene times, contemporaneous with obduction of the Zambales and Angat ophiolites on Luzon. (2) subduction of a Mesozoic (?) oceanic basin along the proto-Manila trench from the Upper Oligocene to the Lower Miocene. (3) obduction of the South China Sea oceanic crust onto the Chinese and Reed Bank—Calamian passive margins in Middle Miocene time (14-15 Ma) related to a major kinematic reorganization (end of opening of the S.C.S.). (4) beginning of collision between the Luzon microblock and the two margins of the S.C.S. in the Upper Miocene (~ 7 Ma); collision is still active in Taiwan whereas it stopped in Mindoro during the Pliocene.

Longitudinal analysis of hearing loss in a case of hemosiderosis of the central nervous system.

PubMed

Weekamp, H H; Huygen, P L M; Merx, J L; Kremer, H P H; Cremers, Cor W R J; Longridge, Neil S

2003-09-01

To describe cochleovestibular aspects of superficial hemosiderosis of the central nervous system. Superficial hemosiderosis of the central nervous system is a rare disease in which cochleovestibular impairment, cerebellar ataxia, and myelopathy are the most frequent signs. Chronic recurrent subarachnoidal hemorrhage with bleeding into the cerebrospinal fluid is the cause of deposition of hemosiderin in leptomeningeal and subpial tissue, cranial nerves, and spinal cord. Removing the cause of bleeding can prevent irreversible damage to these structures. Because this is the only effective treatment, an early diagnosis is crucial. Retrospective case review. Tertiary referral center. A 72-year-old woman with superficial hemosiderosis of the central nervous system that developed when she was age 39. Neurologic and imaging diagnostic examinations and longitudinal evaluation of cochleovestibular features were performed. Neurosurgery was not performed. Progressive bilateral sensorineural hearing loss and severe vestibular hyporeflexia developed within 15 years, which can be attributed to lesions in the cochleovestibular system. Additional pathology of the central nervous system developed later. The patient demonstrated cochlear and vestibular findings that are typical of this pathologic condition. It is the first documented case with extensive serial audiometry used to precisely outline the degree of hearing deterioration during the course of the disease.

Reelin Promotes Neuronal Orientation and Dendritogenesis during Preplate Splitting

PubMed Central

Nichols, Anna J.

2010-01-01

The secreted ligand Reelin is thought to regulate the translocation and positioning of prospective layer 6 (L6) neurons into the preplate, a plexus of neurons overlying the ventricular zone. We examined wild type and Reelin-deficient cortices and found that L6 neurons were equivalently positioned beneath the pia during the period of preplate splitting and initial cortical plate (CP) formation. The absence of detectable L6 ectopia in “reeler” cortices at this developmental time point indicates that Reelin-signaling might not regulate L6 neuron migration or gross positioning during preplate splitting. To explore the acute response of L6 neurons to Reelin, subpial injections of Reelin were made into Reelin-deficient explants. Reelin injection caused L6 neurons to orient their nuclei and polarize their Golgi toward the pia while initiating exuberant dendritic (MAP2+) outgrowth within 4 h. This rapid Reelin-dependent neuronal orientation and alignment created CP-like histology without any significant change in the mean position of the population of L6 neurons. Conversely, subplate cells and chondroitin sulfate proteoglycan immunoreactivity were found at significantly deeper positions from the pial surface after injection, suggesting that Reelin partially rescues preplate splitting within 4 h. Thus, Reelin has a direct role in promoting rapid morphological differentation and orientation of L6 neurons during preplate splitting. PMID:20064940

Photochemical model estimated fire impacts on ozone and aerosol evaluated with field studies and routine data sources

NASA Astrophysics Data System (ADS)

Baker, K. R.

2017-12-01

Highly instrumented field studies provide a unique opportunity to evaluate multiple aspects of photochemical grid model representation of fire emissions, dispersion, and chemical evolution. Fuel information and burn area for a specific fire coupled with near-fire and downwind chemical measurements provides information needed to constrain model predicted fire plume transport and chemical evolution of important pollutants such as ozone and particulate matter (PM2.5) that have deleterious health effects. Most local to regional scale field campaigns to date have made relatively few transects through plumes from fires with well characterized fuel type and consumption. While more comprehensive field studies are being planned for 2018 and beyond (WE-CAN, FIREX, FIRE-CHEM, and FASMEE), existing measurement data from multiple field campaigns including 2013 SEAC4RS, satellite data, and routine surface networks are used to assess how a regulatory modeling system captures fire impacts on local to regional scale ozone and PM2.5. Key aspects of the regulatory modeling system include fire location and burn area from SMARTFIRE2, emissions from BlueSky framework, and predictions of ambient O3 and PM2.5 from the Community Multiscale Air Quality (CMAQ) photochemical transport model. A comparison of model estimated O3 from specific fires with routine surface measurements at rural locations in proximity to the 2013 Rim fire, 2011 Wallow fire, and 2011 Flint Hills fires suggest the modeling system over-estimates smoke impacts on hourly ozone. Sensitivity simulations where solar radiation and photolysis rates are more aggressively attenuated by smoke reduced O3 predictions but did not ameliorate the over prediction bias. PM2.5 organic carbon tends to be overpredicted at rural surface sites downwind from the 2011 Flint Hills prescribed fires while results were mixed at rural sites downwind of the 2013 Rim fire and 2011 Wallow fire suggesting differences in fuel characterization (e.g., emission factors, emissions speciation, burn period, etc.) between these areas may contribute to differences in model prediction. Aircraft plume transects made downwind of the 2013 Rim fire and satellite information suggest the model does well at regional scale plume transport.

Interrelationship of Cn2 & Eddy Dissipation rate based on Scintillometer and Doppler Lidar observations in complex terrain during the Perdigao Campaign 2017

NASA Astrophysics Data System (ADS)

Creegan, E. D.; Krishnamurthy, R.; Hocut, C. M.; Pattantyus, A.; Leo, L. S.; Wang, Y.; Fernando, H. J.; Bariteau, L.

2017-12-01

The Perdigao campaign is a joint EU/US science project designed to provide information on flow field(s) over complex terrain and through wind turbines at unprecedented high spatial and temporal resolution. The goal is to improve wind energy physics and overcome the current deficiencies of wind resource models. Topographically the Perdigao location is an expansion of the "double hill in crossflow", consisting of two parallel ridges along the NW-SE direction. The site was heavily instrumented with an array of towers (with multiple transects along the valley and across two ridges) and a large suite of ground based and aerial remote sensing platforms. On the outflow side of the NW ridge a scintillometer was emplaced with the line-of-sight (LOS) running adjacent to the towers comprising the NE transect from the ridgetop down to the base. Scanning lidars were placed at both ends of this LOS. Other instruments included a tethered lifting system (TLS), sodar, microwave radiometer, an energy budget flux tower and radiosonde releases. Scintillomoter data provides a quantitative measure of the intensity of optical turbulence, through the refractive index structure parameter, Cn2, where averaged Cn2 is often determined as a function of local differences in temperature, moisture, and wind velocity at discrete points. The refractive index structure parameter is also a function of the inner (dissipation) and outer (energy producing) turbulent scales. The scintillometer directly gives path averaged Cn2 and Eddy Dissipation rate along the LOS. Coplanar scans along the same path were synchronized using two scanning coherent Doppler lidars. Algorithms have been developed to estimate both eddy dissipation rate and Cn2 from Doppler lidar data effectively creating a new lidar data product. Additionally, from TLS measurements, Cn2 and dissipation rate are calculated using the high frequency spectra of the hot-wire sensor. In this work, measurements of Cn2 and Eddy Dissipation rate between multiple Doppler lidars, scintillometer and TLS are compared and the relationship between refractive index structure parameter and turbulence is explored. The effect of optical turbulence under various atmospheric conditions in complex terrain will be investigated.

Integrated Airborne and In-Situ Measurements Over Land-Fast Ice Near Barrow, AK.

NASA Astrophysics Data System (ADS)

Gardner, J. M.; Brozena, J. M.; Richter-Menge, J.; Abelev, A.; Liang, R.; Ball, D.; Claffey, K. J.; Hebert, D. A.; Jones, K.

2015-12-01

The Naval Research Laboratory has collected two field seasons of integrated airborne and in-situ measurements over multiple sites of floating, but land-fast ice north of Barrow, AK. During the first season in March of 2014 the Cold Regions Research and Engineering Laboratory led the on-ice group including NRL personnel and Naval Academy midshipmen. The second season (March 2015) included only NRL scientists and midshipmen. The in-situ data provided ground-truth for airborne measurements from a scanning LiDAR (Riegl Q 560i), digital photogrammetry (Applanix DSS-439), a low-frequency SAR (P-band in 2014 and P and L bands in 2015) and a snow/Ku radar procured from the Center for Remote Sensing of Ice Sheets of the University of Kansas. The CReSIS radar was updated in 2015 to integrate the snow and Ku radars into a single continuous chirp, thus improving resolution. The objective of the survey was to aid our understanding of the use of the airborne data to calibrate/validate Cryosat-2 data. Sampling size or "footprint" plays a critical role in the attempt to compare in-situ measurements with airborne (or satellite) measurements. Thus the in-situ data were arranged to minimize aliasing. Ground measurements were collected along transects a sites generally consisting of a 2 km long profile of Magnaprobe and EM31 measurements with periodic boreholes. A 60 m x 400 m swath of Magnaprobe measurements was centered on this profile. Airborne data were collected on multiple overflights of the transect areas. The LiDAR measured total freeboard (ice + snow) referenced to leads in the ice, and produced swaths 200-300 m wide. The SAR imaged the ice beneath the snow and the snow/Ku radar measured snow thickness. The freeboard measurements and snow thickness are used to estimate ice thickness via isostasy and density estimates. Comparisons and processing methodology will be shown. The results of this ground-truth experiment will inform our analysis of grids of airborne data collected over areas of sea-ice illuminated by Cryosat-2.

Totally laparoscopic pylorus-preserving gastrectomy for early gastric cancer in the middle stomach: technical report and surgical outcomes.

PubMed

Kumagai, Koshi; Hiki, Naoki; Nunobe, Souya; Sekikawa, Sayuri; Chiba, Takehiro; Kiyokawa, Takashi; Jiang, Xiaohua; Tanimura, Shinya; Sano, Takeshi; Yamaguchi, Toshiharu

2015-01-01

The feasibility, safety, and improved quality of postoperative life following laparoscopy-assisted pylorus-preserving gastrectomy (LAPPG) with a hand-sewn anastomosis via a mini-laparotomy for early gastric cancer (EGC) have been previously established. Here we describe the surgical procedure of totally laparoscopic pylorus-preserving gastrectomy (TLPPG) using an intracorporeal delta-shaped anastomosis technique, and the short-term surgical outcomes of 60 patients with EGC in the middle stomach are reported. After lymphadenectomy and mobilization of the stomach, intraoperative gastroscopy was performed in order to verify the location of the tumor, and then the distal and proximal transecting lines were established, 5 cm from the pyloric ring and just proximal to Demel's line, respectively. Following transection of the stomach, a delta-shaped intracorporeal gastrogastrostomy was made with linear staplers. There were no intraoperative complications or conversions to open surgery. Mean operation time and blood loss were 259 min and 28 mL, respectively. Twelve patients (20.0%) experienced postoperative complications classified as grade II using the Clavien-Dindo classification, with the most frequent complication being gastric stasis (6 cases, 10.0 %). The incidence of severe complications classified as grade III or above was 1.7%; only one patient required reoperation and intensive care due to postoperative intraabdominal bleeding and subsequent multiple organ failure. TLPPG with an intracorporeal delta-shaped anastomosis was found to be a safe procedure, although it tended to require a longer operating time than the well-established LAPPG with a hand-sewn gastrogastrostomy.

Right-sided vagus nerve stimulation inhibits induced spinal cord seizures.

PubMed

Tubbs, R Shane; Salter, E George; Killingsworth, Cheryl; Rollins, Dennis L; Smith, William M; Ideker, Raymond E; Wellons, John C; Blount, Jeffrey P; Oakes, W Jerry

2007-01-01

We have previously shown that left-sided vagus nerve stimulation results in cessation of induced spinal cord seizures. To test our hypothesis that right-sided vagus nerve stimulation will also abort seizure activity, we have initiated seizures in the spinal cord and then performed right-sided vagus nerve stimulation in an animal model. Four pigs were anesthetized and placed in the lateral position and a small laminectomy performed in the lumbar region. Topical penicillin, a known epileptogenic drug to the cerebral cortex and spinal cord, was next applied to the dorsal surface of the exposed cord. With the exception of the control animal, once seizure activity was discernible via motor convulsion or increased electrical activity, the right vagus nerve previously isolated in the neck was stimulated. Following multiple stimulations of the vagus nerve and with seizure activity confirmed, the cord was transected in the midthoracic region and vagus nerve stimulation performed. Right-sided vagus nerve stimulation resulted in cessation of spinal cord seizure activity in all animals. Transection of the spinal cord superior to the site of seizure induction resulted in the ineffectiveness of vagus nerve stimulation in causing cessation of seizure activity in all study animals. As with left-sided vagus nerve stimulation, right-sided vagus nerve stimulation results in cessation of induced spinal cord seizures. Additionally, the effects of right-sided vagus nerve stimulation on induced spinal cord seizures involve descending spinal pathways. These data may aid in the development of alternative mechanisms for electrical stimulation for patients with medically intractable seizures and add to our knowledge regarding the mechanism for seizure cessation following peripheral nerve stimulation.

Development of regenerative peripheral nerve interfaces for motor control of neuroprosthetic devices

NASA Astrophysics Data System (ADS)

Kemp, Stephen W. P.; Urbanchek, Melanie G.; Irwin, Zachary T.; Chestek, Cynthia A.; Cederna, Paul S.

2017-05-01

Traumatic peripheral nerve injuries suffered during amputation commonly results in debilitating neuropathic pain in the affected limb. Modern prosthetic technologies allow for intuitive, simultaneous control of multiple degrees of freedom. However, these state-of-the-art devices require separate, independent control signals for each degree of freedom, which is currently not possible. As a result, amputees reject up to 75% of myoelectric devices preferring instead to use body-powered artificial limbs which offer subtle sensory feedback. Without meaningful and intuitive sensory feedback, even the most advanced myoelectric prostheses remain insensate, burdensome, and are associated with enormous cognitive demand and mental fatigue. The ideal prosthetic device is one which is capable of providing intuitive somatosensory feedback essential for interaction with the environment. Critical to the design of such a bioprosthetic device is the development of a reliable biologic interface between human and machine. This ideal patient-prosthetic interface allows for transmission of both afferent somatosensory information and efferent motor signals for a closed-loop feedback system of neural control. Our lab has developed the Regenerative Peripheral Nerve Interface (RPNI) as a biologic nerve interface designed for stable integration of a prosthetic device with transected peripheral nerves in a residual limb. The RPNI is constructed by surgically implanting the distal end of a transected peripheral nerve into an autogenous muscle graft. Animal experiments in our lab have shown recording of motor signals from RPNI's implanted into both rodents and monkeys. Here, we achieve high amplitude EMG signals with a high signal to noise (SNR) ratio.

Recording Fathometer Techniques for Determining Distribution and Biomass of Hydrilla verticillata Royle.

DTIC Science & Technology

1980-10-01

infestation or extent of open water was measured following the same procedures described for deter- fmination of transect percent cover. This value was...procedure where the last vegetation type ended along the transect (i.e. hydrilla, eelgrass, open water ), vegetation coverage was determined for the entire...ated open water , no measurements were made. Approximately 150 to 200 prediction stations were used per monthly sample. 61. For sparse and thick

Changes in vegetative cover on Western Arctic Herd winter range from 1981 to 2005: potential effects of grazing and climate change

Treesearch

Kyle Joly; Randi R. Jandt; Cynthia R. Meyers; Martha J. Cole

2007-01-01

The population of the Western Arctic Herd, estimated at 490,000 caribou (Rangifer tarandus granti) in 2003, is at its highest level in 30 years. Twenty permanent range transects were established in the winter range of the Western Arctic Herd in 1981 to assess the impacts of grazing. These transects were revisited in 1995 and 1996 (1995/96). Only 18...

Adaptive kernel function using line transect sampling

NASA Astrophysics Data System (ADS)

Albadareen, Baker; Ismail, Noriszura

2018-04-01

The estimation of f(0) is crucial in the line transect method which is used for estimating population abundance in wildlife survey's. The classical kernel estimator of f(0) has a high negative bias. Our study proposes an adaptation in the kernel function which is shown to be more efficient than the usual kernel estimator. A simulation study is adopted to compare the performance of the proposed estimators with the classical kernel estimators.

Influence of skid trails and haul roads on understory plant richness and composition in managed forest landscapes in Upper Michigan, USA

Treesearch

David S. Buckley; Thomas R. Crow; Elizabeth A. Nauertz; Kurt E. Schulz

2003-01-01

We evaluated impacts of disturbance in interior haul roads and skid trails on understory vegetation by documenting the areal extent of these features and plant composition along 10 m x 100 m belt transects. Ten belt transects were sampled in each of three comparable northern hardwood forests under even-aged management. These forests were approximately 80 years old and...

Transect studies on pine forests along parallel 52° north, 12-32° east and along a pollution gradient in Poland: general assumptions

Treesearch

Alicja Breymeyer

1998-01-01

The responses of pine forest to changing climate and environmental chemistry were studied along two transects following the pollution and continentality gradients in Poland. One axis begins on the western border of Poland, crosses the country along the 52nd parallel, and ends on the eastern border of Poland in the area of Bialowieza National Park, Biosphere Reserve....

Borehole geophysical, fluid, and hydraulic properties within and surrounding the freshwater/saline-water transition zone, San Antonio segment of the Edwards aquifer, south-central Texas, 2010-11

USGS Publications Warehouse

Thomas, Jonathan V.; Stanton, Gregory P.; Lambert, Rebecca B.

2012-01-01

Although analyses of daily mean equivalent freshwater heads for the East Uvalde transect indicated that the gradient across the freshwater/saline-water interface varied between into and out of the freshwater zone, the data indicate that there was a slightly longer period during which the gradient was out of the freshwater zone. Analyses of all daily mean equivalent freshwater heads for the Tri-County transect indicated that the lateral-head gradients across the freshwater/saline-water interface were typically mixed (not indicative of flow into or out of freshwater zone). Assessment of the daily mean equivalent freshwater heads indicated that, although the lateral-head gradient at the Kyle transect varied between into and out of the freshwater zone, the lateral-head gradient was typically from the transition zone into the freshwater zone.

Effects of selective lingual gustatory deafferentation on suprathreshold taste intensity discrimination of NaCl in rats.

PubMed

Colbert, Connie L; Garcea, Mircea; Spector, Alan C

2004-12-01

In rats, chorda tympani nerve transection (CTX) greatly increases the detection threshold of sodium chloride (NaCl) and severely disrupts salt discriminability. Here it is shown that CTX has surprisingly little effect, if any, on suprathreshold intensity discrimination. Glossopharyngeal nerve transection (GLX), which has no reported effect on salt sensibility, also did not affect performance. Rats were tested in a 2-response, operant taste intensity discrimination task. Difference thresholds for CTX rats were only slightly higher (-0.15 log/10 unit) than those for GLX and sham-transected rats, when 0.05 M served as the standard, and did not significantly differ when 0.1 M NaCl was the standard. Although the perceived intensity of NaCl might be reduced by CTX, input from remaining taste nerves sufficiently maintains the relative discriminability of suprathreshold NaCl concentrations.

Geological controls on soil parent material geochemistry along a northern Manitoba-North Dakota transect

USGS Publications Warehouse

Klassen, R.A.

2009-01-01

As a pilot study for mapping the geochemistry of North American soils, samples were collected along two continental transects extending east–west from Virginia to California, and north–south from northern Manitoba to the US–Mexican border and subjected to geochemical and mineralogical analyses. For the northern Manitoba–North Dakota segment of the north–south transect, X-ray diffraction analysis and bivariate relations indicate that geochemical properties of soil parent materials may be interpreted in terms of minerals derived from Shield and clastic sedimentary bedrock, and carbonate sedimentary bedrock terranes. The elements Cu, Zn, Ni, Cr and Ti occur primarily in silicate minerals decomposed by aqua regia, likely phyllosilicates, that preferentially concentrate in clay-sized fractions; Cr and Ti also occur in minerals decomposed only by stronger acid. Physical glacial processes affecting the distribution and concentration of carbonate minerals are significant controls on the variation of trace metal background concentrations.

Changes in the essential oil composition in the needles of Scots pine (Pinus sylvestris L.) under anthropogenic stress.

PubMed

Judzentiene, Asta; Stikliene, Aida; Kupcinskiene, Eugenija

2007-03-21

Unfavorable anthropogenic factors, such as air pollution, lead to biochemical responses in trees. Changes in the amounts of secondary metabolites may be early indicators of invisible injuries. The aim of this study was to evaluate composition of the essential oils in the needles of Scots pine (Pinus sylvestris L.) growing in the areas affected by pollutant emissions of main factories in Lithuania: a nitrogen fertilizer factory (NFF), a cement factory (CF), and an oil refinery (OR). Totally, 14 pine stands were examined along transects from the factories (July 2005). Volatile components of the needles were extracted and analyzed by GC and GC/MS. Over 70 components of the essential oils were identified in current-year and 1-year-old needles. Along the CF transect for current-year needles, the percentage of diterpenes was decreasing with the increasing pH of the pine bark (r = -0.582; p < 0.05) or with the increasing concentration of SO2 (r = -0.573; p < 0.05); for 1-year-old needles, the percentage of diterpenes was decreasing with the increasing pH of the bark (r = -0.534; p < 0.05). Along the OR transect, in both the current-year and 1-year-old needles, the percentage of diterpenes was decreasing with the increasing SO2 (respectively, r = -0.773; p < 0.01; r = -0.486; p < 0.05); an opposite relation was true for sesquiterpenes (respectively, r = -0.751; p < 0.01; r = 0.785; p < 0.01). The view was different along the NFF transect. For current-year needles, the percentage of monoterpenes was decreasing with the increasing NH3 (r = -0.669; p < 0.01); while the percentage of sesquiterpenes or oxysesquiterpenes was increasing with the increasing NH3 (respectively, r = 0.540; p < 0.05 and r = 0.688; p < 0.01). For each transect, cluster analysis of the percentages of components of essential oils in the needles allowed us to distinguish the most contrasting stands according to the concentration of air pollutants. Current-year needles were more effective as indicators of the effects of pollution than 1-year-old needles in the case of the NFF and the OR transects, and both-aged needles were equally valuable in the case of the CF transect. The changes detected in the proportions of components of the essential oils in the needles of the trees affected by the industrial emissions may play a significant role in modifying the susceptibility of the pine stands to the biotic factors, and also may alter emissions of terpenes from the stands to the atmosphere.

Gas hydrate drilling transect across northern Cascadia margin - IODP Expedition 311

USGS Publications Warehouse

Riedel, M.; Collett, T.; Malone, M.J.; Collett, T.S.; Mitchell, M.; Guerin, G.; Akiba, F.; Blanc-Valleron, M.; Ellis, M.; Hashimoto, Y.; Heuer, V.; Higashi, Y.; Holland, M.; Jackson, P.D.; Kaneko, M.; Kastner, M.; Kim, J.-H.; Kitajima, H.; Long, P.E.; Malinverno, A.; Myers, Gwen E.; Palekar, L.D.; Pohlman, J.; Schultheiss, P.; Teichert, B.; Torres, M.E.; Trehu, A.M.; Wang, Jingyuan; Worthmann, U.G.; Yoshioka, H.

2009-01-01

A transect of four sites (U1325, U1326, U1327 and U1329) across the northern Cascadia margin was established during Integrated Ocean Drilling Program Expedition 311 to study the occurrence and formation of gas hydrate in accretionary complexes. In addition to the transect sites, a fifth site (U1328) was established at a cold vent with active fluid flow. The four transect sites represent different typical geological environments of gas hydrate occurrence across the northern Cascadia margin from the earliest occurrence on the westernmost first accreted ridge (Site U1326) to the eastward limit of the gas hydrate occurrence in shallower water (Site U1329). Expedition 311 complements previous gas hydrate studies along the Cascadia accretionary complex, especially ODP Leg 146 and Leg 204 by extending the aperture of the transect sampled and introducing new tools to systematically quantify the gas hydrate content of the sediments. Among the most significant findings of the expedition was the occurrence of up to 20 m thick sand-rich turbidite intervals with gas hydrate concentrations locally exceeding 50% of the pore space at Sites U1326 and U1327. Moreover, these anomalous gas hydrate intervals occur at unexpectedly shallow depths of 50-120 metres below seafloor, which is the opposite of what was expected from previous models of gas hydrate formation in accretionary complexes, where gas hydrate was predicted to be more concentrated near the base of the gas hydrate stability zone just above the bottom-simulating reflector. Gas hydrate appears to be mainly concentrated in turbidite sand layers. During Expedition 311, the visual correlation of gas hydrate with sand layers was clearly and repeatedly documented, strongly supporting the importance of grain size in controlling gas hydrate occurrence. The results from the transect sites provide evidence for a structurally complex, lithology-controlled gas hydrate environment on the northern Cascadia margin. Local shallow occurrences of high gas hydrate concentrations contradict the previous model of gas hydrate formation at an accretionary prism. However, long-lived fluid flow (part of the old model) is still required to explain the shallow high gas hydrate concentrations, although it is most likely not pervasive throughout the entire accretionary prism, but rather localized and focused by the tectonic processes. Differences in the fluid flow regime across all of the transect drill sites indicate site-specific and probably disconnected (compartmented) deeper fluid sources in the various parts of the accretionary prism. The data and future analyses will yield a better understanding of the geologic controls, evolution and ultimate fate of gas hydrate in an accretionary prism as an important contribution to the role of gas hydrate methane gas in slope stability and possibly in climate change. ?? The Geological Society of London 2009.

Requirement of longitudinal synchrony of epileptiform discharges in the hippocampus for seizure generation: a pilot study.

PubMed

Umeoka, Shuichi C; Lüders, Hans O; Turnbull, John P; Koubeissi, Mohamad Z; Maciunas, Robert J

2012-03-01

The goal in this study was to assess the role of longitudinal hippocampal circuits in the generation of interictal and ictal activity in temporal lobe epilepsy (TLE) and to evaluate the effects of multiple hippocampal transections (MHT). In 6 patients with TLE, the authors evaluated the synchrony of hippocampal interictal and ictal epileptiform discharges by using a cross-correlation analysis, and the effect of MHT on hippocampal interictal spikes was studied. Five of the 6 patients were studied with depth electrodes, and epilepsy surgery was performed in 4 patients (anterior temporal lobectomy in 1 and MHT in 3). Four hundred eighty-two (95.1%) of 507 hippocampal spikes showed an anterior-to-posterior propagation within the hippocampus, with a fixed peak-to-peak interval. During seizures, a significant increase of synchronization between different hippocampal regions and between the hippocampus and the ipsilateral anterior parahippocampal gyrus was observed in all seizures. An ictal increase in synchronization between the hippocampus and ipsilateral amygdala was seen in only 24.1% of the seizures. No changes in synchronization were noticed during seizures between the hippocampi and the amygdala on either side. The structure leading the epileptic seizures varied over time during a given seizure and also from one seizure to another. Spike analysis during MHT demonstrated that there were two spike populations that reacted differently to this procedure--namely, 1) spikes that showed maximum amplitude at the head of the hippocampus (type H); and 2) spikes that showed the highest amplitude at the hippocampal body (type B). A striking decrease in amplitude and frequency of type B spikes was noticed in all 3 patients after transections at the head or anterior portion of the hippocampal body. Type H spikes were seen in 2 cases and did not change in amplitude and frequency throughout MHT. Type B spikes showed constantly high cross-correlation values in different derivations and a relatively fixed peak-to-peak interval before MHT. This fixed interpeak delay disappeared after the first transection, although high cross-correlation values persisted unchanged. All patients who underwent MHT remained seizure free for more than 2 years. These data suggest that synchronized discharges involving the complete anterior-posterior axis of the hippocampal/parahippocampal (H/P) formation underlie the spread of epileptiform discharges outside the H/P structures and, therefore, for the generation of epileptic seizures originating in the H/P structures. This conclusion is supported by the following observations. 1) Hippocampal spikes are consistently synchronized in the whole hippocampal structures, with a fixed delay between the different hippocampal areas. 2) One or two transections between the head and body of the hippocampal formation are sufficient to abolish hippocampal spikes that are synchronized along the anterior-posterior axis of the hippocampus. 3) Treatment with MHT leads to seizure freedom in patients with H/P epilepsy.

Relations among floodplain water levels, instream dissolved-oxygen conditions, and streamflow in the lower Roanoke River, North Carolina, 1997-2001

USGS Publications Warehouse

Bales, Jerad D.; Walters, Douglas A.

2004-01-01

The lower Roanoke River corridor in North Carolina contains a floodplain of national significance. Data from a network of 1 streamflow-measurement site, 13 river-stage sites, 13 floodplain water-level sites located along 4 transects, and 5 in situ water-quality monitoring sites were used to characterize temporal and spatial variations of floodplain and river water levels during 1997-2000 and to describe dissolved-oxygen conditions in the lower Roanoke River for the period 1998-2001. Major differences in the relation of floodplain inundation to flow occurred both among sites at a given transect and among transects. Several floodplain sites were inundated for the full range of flow conditions measured during the study. These included one site on the Big Swash transect (at about river kilometer 119); one site on the Broadneck Swamp transect (river kilometer 97), which was inundated 91 percent of the time during the study; one site on the Devils Gut transect (river kilometer 44), which was inundated throughout the study; and three sites on the Cow Swamp transect (near river kilometer 10). The relation of floodplain inundation depth to Roanoke River flow was highly variable among sites. There was no relation between flow and inundation depth at one of the Big Swash sites or at any of the four Cow Swamp sites. At two of the Big Swash transect sites, there was some relation between inundation depth and 10-day mean flow for flows greater than 700 cubic meters per second. A relatively strong relation between inundation depth and 10-day mean flow occurred at two of the Broadneck Swamp sites and, to a lesser degree, at two of the Devils Gut transect sites. There was much greater interannual variability in floodplain water levels, as represented by the difference between the maximum and minimum daily water level for a given calendar date during January-May and September-October than during the summer and late fall months. If data from this study are representative of long-term conditions, then this means that there is less uncertainty about what future floodplain water levels will be during June-August and November-December than during other months. Rates of ground-water decline, primarily due to evapotranspiration, were fairly similar at all sites, ranging from about 3 to 4 centimeters per day. For a 10-day mean flow of 300 cubic meters per second, an evaporative loss of 2 centimeters per day is equal to about 56 cubic meters per second. Evapotranspiration rates are much lower during the fall and winter months, so losses of river flow to floodplain processes likely are much lower during those months. The ground-water gradient at most sites was from the floodplain to the river, indicating a potential for ground-water movement into the river from the floodplain. At two of the Devils Gut sites, however, the water level often was higher in the river than in the floodplain when floodplain sites were not inundated. This indicates that there is a potential for river water to move as ground water from the river into the floodplain. It seems likely that this feature observed at the Devils Gut transect occurs elsewhere in the lower Roanoke River corridor. Dissolved-oxygen concentrations typically decrease with increasing distance from Roanoke Rapids Dam. During the 1998-2001 study period, the median dissolved-oxygen concentration at Halifax (river kilometer 187), the upstream-most station, was 8.4 milligrams per liter, and the median concentration at the downstream-most station (NC-45, bottom sensor; river kilometer 2.6) was 6.6 milligrams per liter. Several synoptic measurements of dissolved-oxygen concentration down the river identified the presence of a dissolved-oxygen sag in the vicinity of Halifax, with some recovery of concentrations between Halifax and about Scotland Neck at river kilometer 156. Data from the synoptic measurements also indicated that the greatest rate of dissolved-oxygen change with distance along the riv

Geochemistry of soils along a transect from Central Mexico to the Pacific Coast: a pilot study for continental-scale geochemical mapping

USGS Publications Warehouse

Chiprés, J.A.; de la Calleja,; Tellez, J.I.; Jiménez, F.; Cruz, Carlos; Guerrero, E.G.; Castro, J.; Monroy, M.G.; Salinas, J.C.

2009-01-01

The Mexican Geological Survey (SGM), the National Institute of Statistics, Geography and Informatics (INEGI) and the Autonomous University of San Luis Potosi (UASLP) have established a multidisciplinary team with the objective of creating a national program of geochemical mapping of soils in Mexico. This is being done as part of the North American Soil Geochemical Landscapes Project in partnership with the US Geological Survey and the Geological Survey of Canada. As the first step, a pilot study was conducted over a transect that extends from the Mexico–US border near Ciudad Juarez in the north to the Pacific Ocean in the south. This pilot transect was conducted in two phases, and this paper presents results from the first phase, which sampled soils at about a 40-km spacing along a 730-km transect beginning in Central Mexico and ending at the Pacific Coast. Samples were collected from the A and C horizons at each site and 60 elements were analyzed. This pilot study demonstrates that geochemical mapping based on a 40-km spacing is adequate to identify broad-scale geochemical patterns. Geologic influence (i.e., soil parent material) was the most important factor influencing the distribution of elements along the transect, followed by the influence of regional mineralization. The study also showed that influence by human activities over the transect is minimal except possibly in large mining districts. A comparison of element abundance in the A horizon with the environmental soil guidelines in Mexico showed that the natural concentrations of the studied soils were lower than the established threshold for soil restoration with the exception of V and As. The former had a median value (75 mg/kg) approximately equal to the value established in Mexico for soil restoration in agricultural and residential lands (78 mg/kg), and the latter had three values higher than the 22 mg/kg threshold for soil restoration in agricultural and residential lands. These cases demonstrate the importance of knowing the national- and regional-scale geochemistry of Mexican soils as a support for the decision-making process, particularly for the proper formulation and application of soil guidelines designed to protect human and ecosystem health.

Exploring the roles of temperature and NOx on ozone production in the Sacramento urban plume

NASA Astrophysics Data System (ADS)

Lafranchi, B. W.; Cohen, R. C.

2009-12-01

We investigate the role of temperature and NOx (NOx = NO+NO2) on ozone (O3) production in the Sacramento urban plume over a stretch of seven years (2001-2007) using data collected at UC Blodgett Forest Research Station (a forested site in the Sierra Nevadas about 80 km downwind of Sacramento, CA) and at a series of California Air Resources Board (CARB) sites along the Sacramento-Blodgett transect. The consistent daytime wind patterns between the Central Valley of California and the foothills of the Sierra Nevada mountains permits the assumption of plume transport from downtown Sacramento, over the CARB monitoring sites in the eastern suburbs, and past the Blodgett Forest research site. While NOx emissions are limited primarily to the urban and suburban regions of the transect, biogenic volatile organic compound (VOC) emissions are significant throughout the transect, thus there is a fast transition from VOC-limited to NOx-limited as the plume travels away from the urban center, and we have the opportunity to analyze the differences in ozone production across these two chemical regimes. For this analysis, the Sacramento-Blodgett transect is separated into three segments: urban, suburban, and rural, defined by the locations of selected monitoring sites. Ozone concentrations across each segment are controlled by chemical production (Pchem) and loss (Lchem), deposition to surfaces (Ldep), and mixing with background air (Lmix). At an assumed deposition rate, mixing rate, and background O3 concentration, the net chemical flux of ozone (Pchem - Lchem) can be inferred from differences in ozone concentrations between adjacent monitoring sites. We show that ozone production rates, in general, increase with temperature. We also show that decreases in NOx emissions over the period from 2001-2007 have been effective at reducing ozone production at all points along the transect, but only on days where temperatures are highest. At low temperatures, this decrease is less apparent, and in the urban transect, ozone production is observed to increase as NOx concentrations decrease. This is attributed to the high NOx/VOC ratio that results from reduced biogenic emissions and strong local inputs of NOx, thus driving the chemical environment into a NOx-saturated regime. From these results, we give predictions of future ozone exceedences for various emissions and climate scenarios.

Use of a Bioactive Scaffold to Stimulate ACL Healing Also Minimizes Post-traumatic Osteoarthritis after Surgery

PubMed Central

Murray, Martha M.; Fleming, Braden C.

2013-01-01

Background While ACL reconstruction is the treatment gold standard for ACL injury, it does not reduce the risk of post-traumatic osteoarthritis. Therefore, new treatments that minimize this postoperative complication are of interest. Bio-enhanced ACL repair, in which a bioactive scaffold is used to stimulate healing of an ACL transection, has shown considerable promise in short term studies. The long-term results of this technique and the effects of the bio-enhancement on the articular cartilage have not been previously evaluated in a large animal model. Hypothesis 1) The structural (tensile) properties of the porcine ACL at 6 and 12 months after injury are similar when treated with bio-enhanced ACL repair, bio-enhanced ACL reconstruction, or conventional ACL reconstruction, and all treatments yield results superior to untreated ACL transection. 2) After one year, macroscopic cartilage damage following bio-enhanced ACL repair is similar to bio-enhanced ACL reconstruction and less than conventional ACL reconstruction and untreated ACL transection. Study Design Controlled laboratory study (porcine model) Methods Sixty-two Yucatan mini-pigs underwent ACL transection and randomization to four experimental groups: 1) no treatment, 2) conventional ACL reconstruction, 3) “bio-enhanced” ACL reconstruction using a bioactive scaffold, and 4) “bio-enhanced” ACL repair using a bioactive scaffold. The biomechanical properties of the ligament or graft and macroscopic assessments of the cartilage surfaces were performed after 6 and 12 months of healing. Results The structural properties (i.e., linear stiffness, yield and maximum loads) of the ligament following bio-enhanced ACL repair were not significantly different from bio-enhanced ACL reconstruction or conventional ACL reconstruction, but were significantly greater than untreated ACL transection after 12 months of healing. Macroscopic cartilage damage after bio-enhanced ACL repair was significantly less than untreated ACL transection and bio-enhanced ACL reconstruction, and there was a strong trend (p=.068) that it was less than conventional ACL reconstruction in the porcine model at 12 months. Conclusions Bio-enhanced ACL repair produces a ligament that is biomechanically similar to an ACL graft and provides chondroprotection to the joint following ACL surgery. Clinical Relevance Bio-enhanced ACL repair may provide a new less invasive treatment option that reduces cartilage damage following joint injury. PMID:23857883

Prospects of the ICESat-2 Laser Altimetry Mission for Savanna Ecosystem Structural Studies Based on Airborne Simulation Data

NASA Technical Reports Server (NTRS)

Gwenzi, David; Lefsky, Michael A.; Suchdeo, Vijay P.; Harding, David J.

2016-01-01

The next planned spaceborne lidar mission is the Ice, Cloud and land Elevation Satellite 2 (ICESat-2), which will use the Advanced Topographic Laser Altimeter System (ATLAS) sensor, a photon counting technique. To pre-validate the capability of this mission for studying three dimensional vegetation structure in savannas, we assessed the potential of the measurement approach to estimate canopy height in an oak savanna landscape. We used data from the Multiple Altimeter Beam Experimental Lidar (MABEL), an airborne photon counting lidar sensor developed by NASA's Goddard Space Flight Center. ATLAS-like data was generated using the MATLAS simulator, which adjusts MABEL data's detected number of signal and noise photons to that expected from the ATLAS instrument. Transects flown over the Tejon ranch conservancy in Kern County, California, USA were used for this work. For each transect we chose to use data from the near infrared channel that had the highest number of photons. We segmented each transect into 50 m, 25 m and 14 m long blocks and aggregated the photons in each block into a histogram based on their elevation values. We then used an automated algorithm to identify cut off points where the cumulative density of photons from the highest elevation indicates the presence of the canopy top and likewise where such cumulative density from the lowest elevation indicates the mean terrain elevation. MABEL derived height metrics were moderately correlated to discrete return lidar (DRL) derived height metrics r(sub 2) and RMSE values ranging from 0.60 to 0.73 and 2.9 m to 4.4 m respectively) but MATLAS simulation resulted in more modest correlations with DRL indices r(sub 2) ranging from 0.5 to 0.64 and RMSE from 3.6 m to 4.6 m). Simulations also indicated that the expected number of signal photons from ATLAS will be substantially lower, a situation that reduces canopy height estimation precision especially in areas of low density vegetation cover. On the basis of the simulated data, there is reason to believe that the ability of ICESat-2 to estimate height in savannas will be comparable to the original ICESat mission although the respective sensors have different measurement principles.

The IODP NanTroSEIZE Transect: Accomplishments and Future Plans

NASA Astrophysics Data System (ADS)

Tobin, H. J.; Kinoshita, M.; Araki, E.; Byrne, T. B.; Kimura, G.; McNeill, L. C.; Moore, G. F.; Saffer, D. M.; Underwood, M.; Saito, S.

2009-12-01

The Nankai Trough Seismogenic Zone Experiment (NanTroSEIZE) is a decade-long project to investigate the processes and properties that determine the nature of frictional locking, creep and other fault behavior governing seismogenic rupture and tsunamigenesis on a major plate boundary where great subduction earthquakes occur. The main goal of the science plan is to sample and instrument the key faults in several locations across the transition from those dominated by frictionally stable, aseismic processes vs. those hypothesized to be frictionally locked (seismogenic) faults of the megathrust system. The transect includes primary drill sites from the incoming plate, across the outer accretionary complex of the lower slope, to the Kumano forearc basin and underlying up-dip end of the likely locked plate interface. The scale of this project required a division into multiple stages of operations, spanning a number of years and IODP expeditions. From September 2007 through October 2009, the NanTroSEIZE science team has achieved many of its primary goals during 5 expeditions. Completed drill sites to date include penetrations ranging from ~200 m to ~1600 m below the sea floor that have documented the faults and wall rocks of both the frontal thrust and out-of-sequence splay faults in the accretionary system, the sedimentary section of the subducting plate, and the thick forearc basin sedimentary record and underlying older subduction complex in the hanging wall of the main plate interface. Major results include characterization of: the fault zone geology, strain localization, and physical properties shallower than ~ 1 km, the distribution of ambient (and paleo-) stress orientations across the transect, the absence of evidence for focused fluid channeling along the principal shallow fault systems, and the tectonic history of the subduction system. Extensive downhole measurements and a 2-ship VSP have further documented stress, pressure, rock strength, and elastic properties around the boreholes. The first temporary long-term monitoring instruments are now in place in one sealed borehole, recording pore pressure and temperature. The most ambitious aspect of the NanTroSEIZE project remains for the now-scheduled next stage: drilling to ~ 7000 m below the sea bed across the faults of the main plate boundary, then placing long-term monitoring instruments into both deep and shallow sealed borehole observatories - all to test hypotheses of locking, strain accumulation, and interseismic fault processes.

Use of Posterior Hamstring Harvest During Anterior Cruciate Ligament Reconstruction in the Pediatric and Adolescent Population.

PubMed

Khanna, Krishn; Janghala, Abhinav; Pandya, Nirav K

2018-06-01

Posterior hamstring harvest has been described in the adult population in a limited fashion, but no study is available describing the use of posterior hamstring harvest in an active pediatric and adolescent cohort. At times, surgeons may be faced with a challenging anterior harvest due to patient anatomic characteristics, particularly the anatomic features and size of the pes tendons. Clinicians need to have multiple harvest approaches at their disposal. Complications with hamstring harvest such as premature graft transection are more problematic in this population due to higher failure rates with allograft tissue. The posterior harvest via its more proximal location may allow for easier tendon identification, visualization of the accessory attachments, and longer preserved tendon length if transection error occurs when the anterior approach is avoided based on surgical technique, patient anatomic characteristics, and surgeon and patient preference. To describe the technique of a posterior hamstring harvest in pediatric and adolescent patients and to analyze complications. Case series; Level of evidence, 4. This study was a retrospective review of a consecutive series of pediatric and adolescent patients who underwent posterior hamstring harvest. During surgery, the patient's leg was abducted and externally rotated to expose the posteromedial aspect of the knee. A 2-cm incision was made overlying the palpable medial hamstring at the popliteal crease. The posterior hamstring tendons were first harvested proximally with an open tendon stripper and distally with a closed stripper. Preoperative, intraoperative, and postoperative findings and complications were analyzed. A total of 214 patients (mean ± SD age, 15.7 ± 4.1 years; range, 8.0-19.8 years) underwent posterior harvest, with a mean ± SD follow-up of 1.83 ± 1.05 years. No complications occurred in our series related to graft harvest-no graft transections, neurovascular injuries, secondary procedures for wound healing or closure, cosmetic concerns, or limitations in return to activity due to the posterior incision. The posterior hamstring harvest is a safe and reliable technique to harvest autograft tendon in pediatric and adolescent anterior cruciate ligament reconstructions. The posterior technique entailed no complications related to harvest. No patients expressed any cosmetic concerns about their incision or had limitations in return to sport due to the posterior harvest.

Igneous stratigraphy and rock-types from a deep transect of the gabbroic lower crust of the Atlantis Bank core complex (SW Indian Ridge): preliminary results from IODP Expedition 360

NASA Astrophysics Data System (ADS)

Sanfilippo, A.; France, L.; Ghosh, B.; Liu, C. Z.; Morishita, T.; Natland, J. H.; Dick, H. J.; MacLeod, C. J.; Expedition 360 Scientists, I.

2016-12-01

International Ocean Discovery Program (IODP) Expedition 360 represents the first leg of a multi-phase drilling programme ('SloMo' project) aimed at investigating the nature of the lower crust and Moho at slow spreading ridges. As an initial phase of the SloMo project, IODP Exp. 360 intended to recover a representative transect of the lower oceanic crust formed at Atlantis Bank, an oceanic core complex on the SW Indian Ridge. During this expedition, 89 cores of gabbroic rocks were recovered at Hole U1473A, drilled to 789.7 m below seafloor. This hole was subsequently deepened to 809.4 mbsf during transit Expedition 362T, which recovered additional 7 cores. The gabbroic section recovered at Hole U1473A consists of several types of gabbro, diabase, and felsic veins. The main lithology is dominated by olivine gabbro (76.5% in abundance), followed by gabbro containing 1-2% oxide (9.5%), gabbro with >2% oxide (7.4%), gabbro sensu stricto (5.1%), felsic veins (1.5%) and diabase (<0.5%). The different lithologies appear randomly distributed throughout the section, although oxide abundance seems to decrease slightly downhole, except for the lowermost intervals where oxide gabbros are more abundant. Based on changes in rock types, grain size, texture, and the occurrence of felsic material, we identified eight lithologic units, which locally define separate geochemical trends. Each unit is characterized by meter-scale heterogeneity which classically characterizes gabbros formed at slow spreading ridges. Reaction textures in olivine gabbros, crosscutting relationships between oxide gabbros and host rocks, the presence of intrusive to sutured contacts, igneous layering and the widespread occurrence of felsic veins and segregations indicate that the evolution of this section was controlled by complicated interactions of magmatic processes, e.g., fractional crystallization, melt-rock reaction, late-stage melt migration, which were active in a crystal mush formed by multiple injections of magma. This contribution describes the main features of these rocks and discusses the complexity of the igneous processes producing this 800 m-long transect of oceanic crust that was formed in a robust magmatic segment of an ultraslow spreading ridge.

Bombing Target Identification from Limited Transect Data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Roberts, Barry L.; Hathaway, John E.; Pulsipher, Brent A.

2006-08-07

A series of sensor data combined with geostatistical techniques were used to determine likely target areas for a historic military aerial bombing range. Primary data consisted of magnetic anomaly information from limited magnetometer transects across the site. Secondary data included airborne LIDAR, orthophotography, and other general site characterization information. Identification of likely target areas relied primarily upon kriging estimates of magnetic anomaly densities across the site. Secondary information, such as impact crater locations, was used to refine the boundary delineations.

Effective therapy of transected quadriceps muscle in rat: Gastric pentadecapeptide BPC 157.

PubMed

Staresinic, Mario; Petrovic, Igor; Novinscak, Tomislav; Jukic, Ivana; Pevec, Damira; Suknaic, Slaven; Kokic, Neven; Batelja, Lovorka; Brcic, Luka; Boban-Blagaic, Alenka; Zoric, Zdenka; Ivanovic, Domagoj; Ajduk, Marko; Sebecic, Bozidar; Patrlj, Leonardo; Sosa, Tomislav; Buljat, Gojko; Anic, Tomislav; Seiwerth, Sven; Sikiric, Predrag

2006-05-01

We report complete transection of major muscle and the systemic peptide treatment that induces healing of quadriceps muscle promptly and then maintains the healing with functional restoration. Initially, stable gastric pentadecapeptide BPC 157 (GEPPPGKPADDAGLV, M.W. 1419, PL-10, PLD-116, PL 14736 Pliva, Croatia; in trials for inflammatory bowel disease; wound treatment; no toxicity reported; effective alone without carrier) also superiorly accelerates the healing of transected Achilles tendon. Regularly, quadriceps muscle completely transected transversely 1.0 cm proximal to patella presents a definitive defect that cannot be compensated in rat. BPC 157 (10 microg, 10 ng, 10 pg/kg) is given intraperitoneally, once daily; the first application 30 min posttransection, the final 24 h before sacrifice. It consistently improves muscle healing throughout the whole 72-day period. Improved are: (i) biomechanic (load of failure increased); (ii) function (walking recovery and extensor postural thrust/motor function index returned toward normal healthy values); (iii) microscopy/immunochemistry [i.e., mostly muscle fibers connect muscle segments; absent gap; significant desmin positivity for ongoing regeneration of muscle; larger myofibril diameters on both sides, distal and proximal (normal healthy rat-values reached)]; (iv) macroscopic presentation (stumps connected; subsequently, atrophy markedly attenuated; finally, presentation close to normal noninjured muscle, no postsurgery leg contracture). Thus, posttransection healing-consistently improved-may suggest this peptide therapeutic application in muscle disorders. Copyright 2006 Orthopaedic Research Society.

Modulation of early functional recovery of Achilles tendon to bone unit after transection by BPC 157 and methylprednisolone.

PubMed

Krivic, A; Majerovic, M; Jelic, I; Seiwerth, S; Sikiric, P

2008-05-01

In the presented study we compared the effect of stable peptide BPC 157 and methylprednisolone on early functional recovery after Achilles tendon to bone transection in a rat model before collagen healing started. Surgical transection of the right Achilles tendon to bone area was performed in seventy two Wistar Albino male rats. Healing Achilles tendon edges were harvested at days 1-4 following the transection. Using Achilles functional index (AFI), myeloperoxidase activity, histological inflammatory cell influx and vascular index early functional recovery was evaluated. Agents (stable peptide BPC 157 10 microg methylprednisolone 5 mg, normal saline 5 ml) were given alone (/kg b.w., intraperitoneally, once daily, first 30 min after surgery, last 24 h before analysis). Control group received normal saline 5 ml/kg. BPC 157 improved functional recovery (AFI values increased at all time points, p <0.05) by anti-inflammatory (decreased myeloperoxidase (MPO) activity and histological inflammatory cell influx, p <0.05) and increased new blood vessel formation (increased vascular index, p <0.05). Methyprednisolone decreased MPO activity and histological inflammatory cell influx, (p <0.05) but also decreased new blood vessel formation and did not affect early functional recovery. Stable peptide BPC 157 with combined anti-inflammatory action and induction of early new blood vessel formation facilitates early functional recovery in Achilles tendon to bone healing.

Comparison of ground-based measurements of natural radiation to airborne radiation survey data on transects from coastal California to the Colorado Plateau

NASA Astrophysics Data System (ADS)

Stoffer, P. W.; Hernández, L.; Messina, P.; Dearaujo, J.; Li, A.; Hicks, A.; White, L.

2008-12-01

Natural gamma radiation measurements were collected with a hand-held Geiger counter at nearly 400 locations on two general transects across the southwestern United States. The data are used to provide ground-truth comparison to published airborne radiation surveys of the region. The first transect was collected by high school students in the SF-ROCKS program at San Francisco State University in the summer of 2008 starting in San Francisco. Data were collected across the Sierra Nevada Range on I-80, and across Highway 50 in Nevada, and I-70 in Utah. Data were collected in and around Great Basin, Arches, Capitol Reef, Bryce, and Zion National Parks, and Grand Staircase-Escalante National Monument. A second transect extends from San José, California to Flagstaff, Arizona and includes the Mojave National Reserve, Death Valley region, and locations throughout the Navajo Reservation region in northern Arizona and western New Mexico. Radiation data (with GPS reference) were collected from all the major sedimentary rock formations and igneous rocks of the Colorado Plateau and from many igneous and metamorphic rocks throughout the Great Basin and southern California deserts. Anomalously high localized levels were noted in selected sedimentary units associated with uranium exploration targets in the Colorado Plateau region, and in caverns and rock fissures where radon gas (and accumulation of derivative fission products) are the inferred sources.

Estimating populations of nesting brant using aerial videography

USGS Publications Warehouse

Anthony, R. Michael; Anderson, W.H.; Sedinger, J.S.; McDonald, L.L.

1995-01-01

We mounted a video camcorder in a single-engine aircraft to estimate nesting density along 10-m wide strip transects in black brant colonies on the Yukon Delta National Wildlife Refuge, Alaska during 1990-1992. A global positioning system (GPS) receiver was connected to the video recorder and a laptop computer to locate transects and annotate video tape with time and latitude-longitude at 1-second intervals. About 4-5 hours of flight time were required to record 30-40 minutes of video tape needed to survey large (>5,000 nests in > 10 km2)colonies. We conducted ground searches along transects to locate and identify nests for determining detection rates of nests in video images. Counts of nests from video transects were correlated with actual numbers of nests. Resolution of images was sufficient to detect 81% of known nests (with and without incubating females). Of these, 68% were correctly identified as brant nests. The most common misidentification of known nests was failure of viewers to see the nest that the detected bird was incubating. Unattended nests with exposed eggs, down-covered nests, and nesting brant, cackling Canada geese, and emperor geese were identified in video images. Flushing of incubating geese by survey aircraft was not significant. About 10% of known nests were unoccupied in video images compared to 16% unoccupied nests observed from tower blinds during periods without aircraft disturbance.

Functional regeneration of the transected recurrent laryngeal nerve using a collagen scaffold loaded with laminin and laminin-binding BDNF and GDNF

PubMed Central

Wang, Baoxin; Yuan, Junjie; Chen, Xinwei; Xu, Jiafeng; Li, Yu; Dong, Pin

2016-01-01

Recurrent laryngeal nerve (RLN) injury remains a challenge due to the lack of effective treatments. In this study, we established a new drug delivery system consisting of a tube of Heal-All Oral Cavity Repair Membrane loaded with laminin and neurotrophic factors and tested its ability to promote functional recovery following RLN injury. We created recombinant fusion proteins consisting of brain-derived neurotrophic factor (BDNF) and glial cell line-derived neurotrophic factor (GDNF) fused to laminin-binding domains (LBDs) in order to prevent neurotrophin diffusion. LBD-BDNF, LBD-GDNF, and laminin were injected into a collagen tube that was fitted to the ends of the transected RLN in rats. Functional recovery was assessed 4, 8, and 12 weeks after injury. Although vocal fold movement was not restored until 12 weeks after injury, animals treated with the collagen tube loaded with laminin, LBD-BDNF and LBD-GDNF showed improved recovery in vocalisation, arytenoid cartilage angles, compound muscle action potentials and regenerated fibre area compared to animals treated by autologous nerve grafting (p < 0.05). These results demonstrate the drug delivery system induced nerve regeneration following RLN transection that was superior to that induced by autologus nerve grafting. It may have potential applications in nerve regeneration of RLN transection injury. PMID:27558932

Daily Electrical Muscle Stimulation Enhances Functional Recovery Following Nerve Transection and Repair in Rats.

PubMed

Willand, Michael P; Chiang, Cameron D; Zhang, Jennifer J; Kemp, Stephen W P; Borschel, Gregory H; Gordon, Tessa

2015-08-01

Incomplete recovery following surgical reconstruction of damaged peripheral nerves is common. Electrical muscle stimulation (EMS) to improve functional outcomes has not been effective in previous studies. To evaluate the efficacy of a new, clinically translatable EMS paradigm over a 3-month period following nerve transection and immediate repair. Rats were divided into 6 groups based on treatment (EMS or no treatment) and duration (1, 2, or 3 months). A tibial nerve transection injury was immediately repaired with 2 epineurial sutures. The right gastrocnemius muscle in all rats was implanted with intramuscular electrodes. In the EMS group, the muscle was electrically stimulated with 600 contractions per day, 5 days a week. Terminal measurements were made after 1, 2, or 3 months. Rats in the 3-month group were assessed weekly using skilled and overground locomotion tests. Neuromuscular junction reinnervation patterns were also examined. Muscles that received daily EMS had significantly greater numbers of reinnervated motor units with smaller average motor unit sizes. The majority of muscle endplates were reinnervated by a single axon arising from a nerve trunk with significantly fewer numbers of terminal sprouts in the EMS group, the numbers being small. Muscle mass and force were unchanged but EMS improved behavioral outcomes. Our results demonstrated that EMS using a moderate stimulation paradigm immediately following nerve transection and repair enhances electrophysiological and behavioral recovery. © The Author(s) 2014.

Long-term functional recovery after facial nerve transection and repair in the rat.

PubMed

Banks, Caroline A; Knox, Christopher; Hunter, Daniel A; Mackinnon, Susan E; Hohman, Marc H; Hadlock, Tessa A

2015-03-01

The rodent model is commonly used to study facial nerve injury. Because of the exceptional regenerative capacity of the rodent facial nerve, it is essential to consider the timing when studying facial nerve regeneration and functional recovery. Short-term functional recovery data following transection and repair of the facial nerve has been documented by our laboratory. However, because of the limitations of the head fixation device, there is a lack of long-term data following facial nerve injury. The objective of this study was to elucidate the long-term time course and functional deficit following facial nerve transection and repair in a rodent model. Adult rats were divided into group 1 (controls) and group 2 (experimental). Group 1 animals underwent head fixation, followed by a facial nerve injury, and functional testing was performed from day 7 to day 70. Group 2 animals underwent facial nerve injury, followed by delayed head fixation, and then underwent functional testing from months 6 to 8. There was no statistical difference between the average whisking amplitudes in group 1 and group 2 animals. Functional whisking recovery 6 months after facial nerve injury is comparable to recovery within 1 to 4 months of transection and repair, thus the ideal window for evaluating facial nerve recovery falls within the 4 months after injury. Thieme Medical Publishers 333 Seventh Avenue, New York, NY 10001, USA.

Rapid Liver Hypertrophy After Portal Vein Occlusion Correlates with the Degree of Collateralization Between Lobes-a Study in Pigs.

PubMed

Deal, Rebecca; Frederiks, Charles; Williams, Lauren; Olthof, Pim B; Dirscherl, Konstantin; Keutgen, Xavier; Chan, Edie; Deziel, Daniel; Hertl, Martin; Schadde, Erik

2018-02-01

Associating liver partition and portal vein ligation for staged hepatectomy (ALPPS) induces more rapid liver growth than portal vein ligation (PVL). Transection of parenchyma in ALPPS may prevent the formation of collaterals between lobes. The aim of this study was to determine if abrogating the formation of collaterals through parenchymal transection impacted growth rate. Twelve Yorkshire Landrace pigs were randomized to undergo ALPPS, PVL, or "partial ALPPS" by varying degrees of parenchymal transection. Hepatic volume was measured after 7 days. Portal blood flow and pressure were measured. Portal vein collaterals were examined from epoxy casts. PVL, ALPPS, and partial ALPPS led to volume increases of the RLL by 15.5% (range 3-22), 64% (range 45-76), and 32% (range 18-77), respectively, with significant differences between PVL and ALPPS/partial ALPPS (p < 0.05). In PVL and partial ALPPS, substantial new portal vein collaterals were found. The number of collaterals correlated inversely with the growth rate (p = 0.039). Portal vein pressure was elevated in all models after ligation suggesting hyperflow to the portal vein-supplied lobe (p < 0.05). These data suggest that liver hypertrophy following PVL is inversely proportional to the development of collaterals. Hypertrophy after ALPPS is likely more rapid due to reduction of collaterals through transection.

Sources and distribution of sedimentary organic matter along the Andong salt marsh, Hangzhou Bay

NASA Astrophysics Data System (ADS)

Yuan, Hong-Wei; Chen, Jian-Fang; Ye, Ying; Lou, Zhang-Hua; Jin, Ai-Min; Chen, Xue-Gang; Jiang, Zong-Pei; Lin, Yu-Shih; Chen, Chen-Tung Arthur; Loh, Pei Sun

2017-10-01

Lignin oxidation products, δ13C values, C/N ratios and particle size were used to investigate the sources, distribution and chemical stability of sedimentary organic matter (OM) along the Andong salt marsh located in the southwestern end of Hangzhou Bay, China. Terrestrial OM was highest at the upper marshes and decreased closer to the sea, and the distribution of sedimentary total organic carbon (TOC) was influenced mostly by particle size. Terrestrial OM with a C3 signature was the predominant source of sedimentary OM in the Spartina alterniflora-dominated salt marsh system. This means that aside from contributions from the local marsh plants, the Andong salt marsh received input mostly from the Qiantang River and the Changjiang Estuary. Transect C, which was situated nearer to the Qiantang River mouth, was most likely influenced by input from the Qiantang River. Likewise, a nearby creek could be transporting materials from Hangzhou Bay into Transect A (farther east than Transect C), as Transect A showed a signal resembling that of the Changjiang Estuary. The predominance of terrestrial OM in the Andong salt marsh despite overall reductions in sedimentary and terrestrial OM input from the rivers is most likely due to increased contributions of sedimentary and terrestrial OM from erosion. This study shows that lower salt marsh accretion due to the presence of reservoirs upstream may be counterbalanced by increased erosion from the surrounding coastal areas.

Benthic macroinvertebrate field sampling effort required to ...

EPA Pesticide Factsheets

This multi-year pilot study evaluated a proposed field method for its effectiveness in the collection of a benthic macroinvertebrate sample adequate for use in the condition assessment of streams and rivers in the Neuquén Province, Argentina. A total of 13 sites, distributed across three rivers, were sampled. At each site, benthic macroinvertebrates were collected at 11 transects. Each sample was processed independently in the field and laboratory. Based on a literature review and resource considerations, the collection of 300 organisms (minimum) at each site was determined to be necessary to support a robust condition assessment, and therefore, selected as the criterion for judging the adequacy of the method. This targeted number of organisms was collected at all sites, at a minimum, when collections from all 11 transects were combined. Subsequent bootstrapping analysis of data was used to estimate whether collecting at fewer transects would reach the minimum target number of organisms for all sites. In a subset of sites, the total number of organisms frequently fell below the target when fewer than 11 transects collections were combined.Site conditions where <300 organisms might be collected are discussed. These preliminary results suggest that the proposed field method results in a sample that is adequate for robust condition assessment of the rivers and streams of interest. When data become available from a broader range of sites, the adequacy of the field

Fish populations associated with habitat-modified piers and natural woody debris in Piedmont Carolina reservoirs

USGS Publications Warehouse

Barwick, R.D.; Kwak, T.J.; Noble, R.L.; Barwick, D.H.

2004-01-01

A primary concern associated with reservoir shoreline residential development is reduction of littoral habitat complexity and diversity. One potential approach to compensate for this is the deployment of artificial-habitat modules under existing piers, but the benefit of this practice has not been demonstrated. To evaluate the effect of pier habitat modifications on fish populations in two Piedmont Carolina reservoirs, we studied 77 piers located on forty-seven, 100-m transects that were modified using plastic "fish hab" modules augmented with brush (brushed habs), hab modules alone (habs), or left unaltered for reference purposes. We sampled fish from all piers and transects during April, July, and October 2001 using a boat-mounted electrofisher. With few exceptions, catch rates were higher at brushed-hab piers and piers with habs than at reference piers during all seasons. Similarly, during spring and summer, fish abundance was generally higher on transects containing natural woody debris, brushed habs, and habs than on reference-developed transects; however, during fall, there were exceptions. Therefore, fish abundance associated with shorelines in these reservoirs appears to be related to the structural complexity of available habitat rather than structure composition. One year after installation, 92% of pier owners responding to a mail survey expressed satisfaction with pier modifications. Supplementing piers with habitat structures is recommended to enhance littoral habitat complexity for fishes in residentially developed reservoirs.

Spatial estimation from remotely sensed data via empirical Bayes models

NASA Technical Reports Server (NTRS)

Hill, J. R.; Hinkley, D. V.; Kostal, H.; Morris, C. N.

1984-01-01

Multichannel satellite image data, available as LANDSAT imagery, are recorded as a multivariate time series (four channels, multiple passovers) in two spatial dimensions. The application of parametric empirical Bayes theory to classification of, and estimating the probability of, each crop type at each of a large number of pixels is considered. This theory involves both the probability distribution of imagery data, conditional on crop types, and the prior spatial distribution of crop types. For the latter Markov models indexed by estimable parameters are used. A broad outline of the general theory reveals several questions for further research. Some detailed results are given for the special case of two crop types when only a line transect is analyzed. Finally, the estimation of an underlying continuous process on the lattice is discussed which would be applicable to such quantities as crop yield.

Changes in the colon microbiota and intestinal cytokine gene expression following minimal intestinal surgery

PubMed Central

Lapthorne, Susan; Bines, Julie E; Fouhy, Fiona; Dellios, Nicole L; Wilson, Guineva; Thomas, Sarah L; Scurr, Michelle; Stanton, Catherine; Cotter, Paul D; Pereira-Fantini, Prue M

2015-01-01

AIM: To investigate the impact of minor abdominal surgery on the caecal microbial population and on markers of gut inflammation. METHODS: Four week old piglets were randomly allocated to a no-surgery “control” group (n = 6) or a “transection surgery” group (n = 5). During the transection surgery procedure, a conventional midline incision of the lower abdominal wall was made and the small intestine was transected at a site 225 cm proximal to the ileocaecal valve, a 2 cm segment was removed and the intestine was re-anastomosed. Piglets received a polymeric infant formula diet throughout the study period and were sacrificed at two weeks post-surgery. Clinical outcomes including weight, stool consistency and presence of stool fat globules were monitored. High throughput DNA sequencing of colonic content was used to detect surgery-related disturbances in microbial composition at phylum, family and genus level. Diversity and richness estimates were calculated for the control and minor surgery groups. As disturbances in the gut microbial community are linked to inflammation we compared the gene expression of key inflammatory cytokines (TNF, IL1B, IL18, IL12, IL8, IL6 and IL10) in ileum, terminal ileum and colon mucosal extracts obtained from control and abdominal surgery groups at two weeks post-surgery. RESULTS: Changes in the relative abundance of bacterial species at family and genus level were confined to bacterial members of the Proteobacteria and Bacteroidetes phyla. Family level compositional shifts included a reduction in the relative abundance of Enterobacteriaceae (22.95 ± 5.27 vs 2.07 ± 0.72, P < 0.01), Bacteroidaceae (2.54 ± 0.56 vs 0.86 ± 0.43, P < 0.05) and Rhodospirillaceae (0.40 ± 0.14 vs 0.00 ± 0.00, P < 0.05) following transection surgery. Similarly, at the genus level, changes associated with transection surgery were restricted to members of the Proteobacteria and Bacteroidetes phyla and included decreased relative abundance of Enterobacteriaceae (29.20 ± 6.74 vs 2.88 ± 1.08, P < 0.01), Alistipes (4.82 ± 1.73 vs 0.18 ± 0.13, P < 0.05) and Thalassospira (0.53 ± 0.19 vs 0.00 ± 0.00, P < 0.05). Surgery-associated microbial dysbiosis was accompanied by increased gene expression of markers of inflammation. Within the ileum IL6 expression was decreased (4.46 ± 1.60 vs 0.24 ± 0.06, P < 0.05) following transection surgery. In the terminal ileum, gene expression of TNF was decreased (1.51 ± 0.13 vs 0.80 ± 0.16, P < 0.01) and IL18 (1.21 ± 0.18 vs 2.13 ± 0.24, P < 0.01), IL12 (1.04 ± 0.16 vs 1.82 ± 0.32, P < 0.05) and IL10 (1.04 ± 0.06 vs 1.43 ± 0.09, P < 0.01) gene expression increased following transection surgery. Within the colon, IL12 (0.72 ± 0.13 vs 1.78 ± 0.28, P < 0.01) and IL10 (0.98 ± 0.02 vs 1.95 ± 0.14, P < 0.01) gene expression were increased following transection surgery. CONCLUSION: This study suggests that minor abdominal surgery in infants, results in long-term alteration of the colonic microbial composition and persistent gastrointestinal inflammation. PMID:25892864

Changes in the colon microbiota and intestinal cytokine gene expression following minimal intestinal surgery.

PubMed

Lapthorne, Susan; Bines, Julie E; Fouhy, Fiona; Dellios, Nicole L; Wilson, Guineva; Thomas, Sarah L; Scurr, Michelle; Stanton, Catherine; Cotter, Paul D; Pereira-Fantini, Prue M

2015-04-14

To investigate the impact of minor abdominal surgery on the caecal microbial population and on markers of gut inflammation. Four week old piglets were randomly allocated to a no-surgery "control" group (n = 6) or a "transection surgery" group (n = 5). During the transection surgery procedure, a conventional midline incision of the lower abdominal wall was made and the small intestine was transected at a site 225 cm proximal to the ileocaecal valve, a 2 cm segment was removed and the intestine was re-anastomosed. Piglets received a polymeric infant formula diet throughout the study period and were sacrificed at two weeks post-surgery. Clinical outcomes including weight, stool consistency and presence of stool fat globules were monitored. High throughput DNA sequencing of colonic content was used to detect surgery-related disturbances in microbial composition at phylum, family and genus level. Diversity and richness estimates were calculated for the control and minor surgery groups. As disturbances in the gut microbial community are linked to inflammation we compared the gene expression of key inflammatory cytokines (TNF, IL1B, IL18, IL12, IL8, IL6 and IL10) in ileum, terminal ileum and colon mucosal extracts obtained from control and abdominal surgery groups at two weeks post-surgery. Changes in the relative abundance of bacterial species at family and genus level were confined to bacterial members of the Proteobacteria and Bacteroidetes phyla. Family level compositional shifts included a reduction in the relative abundance of Enterobacteriaceae (22.95 ± 5.27 vs 2.07 ± 0.72, P < 0.01), Bacteroidaceae (2.54 ± 0.56 vs 0.86 ± 0.43, P < 0.05) and Rhodospirillaceae (0.40 ± 0.14 vs 0.00 ± 0.00, P < 0.05) following transection surgery. Similarly, at the genus level, changes associated with transection surgery were restricted to members of the Proteobacteria and Bacteroidetes phyla and included decreased relative abundance of Enterobacteriaceae (29.20 ± 6.74 vs 2.88 ± 1.08, P < 0.01), Alistipes (4.82 ± 1.73 vs 0.18 ± 0.13, P < 0.05) and Thalassospira (0.53 ± 0.19 vs 0.00 ± 0.00, P < 0.05). Surgery-associated microbial dysbiosis was accompanied by increased gene expression of markers of inflammation. Within the ileum IL6 expression was decreased (4.46 ± 1.60 vs 0.24 ± 0.06, P < 0.05) following transection surgery. In the terminal ileum, gene expression of TNF was decreased (1.51 ± 0.13 vs 0.80 ± 0.16, P < 0.01) and IL18 (1.21 ± 0.18 vs 2.13 ± 0.24, P < 0.01), IL12 (1.04 ± 0.16 vs 1.82 ± 0.32, P < 0.05) and IL10 (1.04 ± 0.06 vs 1.43 ± 0.09, P < 0.01) gene expression increased following transection surgery. Within the colon, IL12 (0.72 ± 0.13 vs 1.78 ± 0.28, P < 0.01) and IL10 (0.98 ± 0.02 vs 1.95 ± 0.14, P < 0.01) gene expression were increased following transection surgery. This study suggests that minor abdominal surgery in infants, results in long-term alteration of the colonic microbial composition and persistent gastrointestinal inflammation.

Geomorphological and ecological effects of check dams in mountain torrents of Southern Italy

NASA Astrophysics Data System (ADS)

Zema, Demetrio Antonio; Bombino, Giuseppe; Denisi, Pietro; Tamburino, Vincenzo; Marcello Zimbone, Santo

2017-04-01

It is known that installation of check dams noticeably influences torrent morphology and ecology. However, the effects of check dams on channel section and riparian vegetation of torrents are not yet completely understood. This paper provides a further contribution to a better comprehension of the actions played by check dams on hydrological and geomorphological processes in headwaters and their effects on riparian ecosystem. Field surveys on channel morphology, bed material and riparian vegetation were carried out close to five check dams in each of four mountain reaches of Calabria (Southern Italy). For each check dam three transects (one upstream, one downstream and one far from the check dam, located in the undisturbed zone and adopted as control) were identified; at each transect, a set of geomorphological and ecological indicators were surveyed as follows. Channel section morphology was assessed by the width/depth ratio (w/d); the median particle size (D50) and the finer sediment fraction (%fines) were chosen to characterize channel bed material; the specific discharge (q, the discharge per channel unit width) was assumed as measure of the flow regime. Vegetation cover and structure were evaluated by Global Canopy Cover (GCC) and Weighted Canopy Height (WCH) respectively (Bombino et al., 2008); the index of alpha-diversity (H-alpha, Hill, 1973) and the ratio between the number of alien species and the number of native species (NSA/NSN) were chosen as indicators of species richness/abundance and degree of vegetation integrity, respectively. Compared to the control transects, the values of w/d were higher upstream of check dams and lower downstream; conversely, q was lower upstream and higher in downstream sites. Upstream of the check dams D50 of bed material was lower and %fines was higher compared to the control transects; vice versa, the downstream transects showed higher D50 and lower %fines. The differences in the riparian vegetation among transects were found as the torrent ecological response to the strong contrasts surveyed in hydrological (q) and geomorphological (w/d, D50 and %fines) characteristics. Compared to control transects, vegetation was more extensive (higher GCC) and developed (higher WCH) in the upstream zones; the reverse pattern was noticed in the downstream transects (lower GCC and WCH). The indexes H-alpha and NSA/NSN were higher upstream of check dams: the presence of the check dams induced higher species richness and evenness, with alien species prevailing over native ones in the sedimentation wedge. Conversely, downstream of check dams H-alpha and NSA/NSN were lower: here, riparian vegetation lost some herbaceous species and assumed a terrestrial character. Overall, this study confirms on a quantitative approach that check dams have far reaching effects on geomorphology and ecology of mountain torrent channels; as a consequence, important and complex changes occur not only in the extent and development of riparian vegetation, but also in the species diversity and distribution. REFERENCES - Bombino G., Gurnell A.M., Tamburino V., Zema D.A., Zimbone S.M. 2008. Sediment size variation in torrents with check-dams: effects on riparian vegetation. Ecological Engineering 32(2), 166-177. - Hill MO. 1973. Diversity and evenness: a unifying notation and its consequences. Ecology 54: 427-431.

Saccular and utricular inputs to sternocleidomastoid motoneurons of decerebrate cats.

PubMed

Kushiro, K; Zakir, M; Ogawa, Y; Sato, H; Uchino, Y

1999-06-01

Connections from the otolithic organs to sternocleidomastoid (SCM) motoneurons were studied in 20 decerebrate cats. The electrical stimulation was selective for the saccular or the utricular nerves. Postsynaptic potentials were recorded from antidromically identified SCM motoneurons; these muscles participate mainly in neck rotation and flexion. Partial transections of the brainstem at the level of the obex were performed to identify the possible pathway from the otolithic organs to the SCM motoneurons. Saccular or utricular nerve stimulation mainly evoked inhibitory postsynaptic potentials (IPSPs) in the ipsilateral SCM motoneurons. Some of the sacculus-induced IPSPs were preceded by small-amplitude excitatory PSPs (EPSPs). The latencies of the PSPs ranged from 1.8 to 3.1 ms after saccular nerve stimulation and from 1.7 to 2.8 ms after utricular nerve stimulation, indicating that most of the ipsilateral connections were disynaptic. In the contralateral SCM motoneurons, saccular nerve stimulation had no or faint effects, whereas utricular nerve stimulation evoked EPSPs in about two-thirds of neurons, and no visible PSPs in about one-third of neurons. The latencies of the EPSPs ranged from 1.5 to 2.0 ms, indicating the disynaptic connection. Thus, the results suggest a difference between the two otolithic innervating patterns of SCM motoneurons. After transection of the medial vestibulospinal tract (MVST), saccular nerve stimulation did not evoke IPSPs at all in ipsilateral SCM motoneurons, but some (11/40) neurons showed small-amplitude EPSPs. Most (24/33) of the utricular-activated IPSPs disappeared after transection, whereas the other 9 neurons still indicated IPSPs. In the contralateral SCM motoneurons, no utricular-activated EPSPs were recorded after transection. These MVST transection results suggest that most of the otolith-SCM pathways are located in the MVST at the obex level. However, the results also suggest the possibility that other otolith-SCM pathways exist at the obex level.

Remarkably Consistent Thermal State of the south Central Chile Subduction Zone from 36°S to 45°S

NASA Astrophysics Data System (ADS)

Rotman, H.; Spinelli, G. A.

2013-12-01

Delineating the rupture areas of large subduction zone earthquakes is necessary for understanding the controls on seismic and aseismic slip on faults. For the largest recorded earthquake, an event in south central Chile in 1960 with moment magnitude 9.5, the rupture area is only loosely defined due to limitations in the global seismic network at the time. The rupture extends ~900 km along strike on the margin. Coastal deformation is consistent with either a constant rupture width of ~200 km along the entire length, or a much narrower width (~115 km) for the southern half of the rupture. A southward narrowing of the seismogenic zone has been hypothesized to result from warming of the subduction zone to the south, where the subducting plate is younger. Here, we present results of thermal models at 36°S, 38°S, 43°S, and 45°S to examine potential along-strike changes the thermal state of the margin. We find that temperatures in the subduction zone are strongly affected by both fluid circulation in the high permeability upper oceanic crust and frictional heating on the plate boundary fault. Hydrothermal circulation preferentially cools transects with young subducting lithosphere; frictional heating preferentially warms transects with older subducting lithosphere. The combined effects of frictional heating and hydrothermal circulation increase decollement temperatures in the 36°S and 38°S transects by up to ~155°C, and decrease temperatures in the 45°S transect by up to ~150°C. In our preferred models, decollement temperatures 200 km landward of the trench in all four transects are ~350-400°C. This is consistent with a constant ~200 km wide seismogenic zone for the 1960 Mw 9.5 rupture, with decreasing slip magnitude in the southern half of the rupture.

The Distribution and Magnitude of Glacial Erosion on 103-year Timescales at Engabreen, Norway

NASA Astrophysics Data System (ADS)

Rand, C.; Goehring, B. M.

2017-12-01

We derive the magnitudes of glacial erosion integrated over 103-year timescales across a transect transverse to the direction of ice flow at Engabreen, Norway. Understanding the distribution of glacial erosion is important for several reasons, including sediment budgeting to fjord environments, development of robust landscape evolution models, and if a better understanding between erosion and ice-bed interface properties (e.g., sliding rate, basal water pressure) can be developed, we can use records of glacial erosion to infer glaciological properties that can ultimately benefit models of past and future glaciers. With few exceptions, measurements of glacial erosion are limited to the historical past and even then are rare owing to the difficulty of accessing the glacier bed. One method proven useful in estimating glacial erosion on 103-year timescales is to measure the remaining concentrations of cosmogenic nuclides that accumulate in exposed bedrock during periods of retracted glacier extent and are removed by glacial erosion and radioactive decay during ice cover. Here we will present measurements of 14C and 10Be measured in proglacial bedrock from Engabreen. Our transects are ca. 600 and 400 meters in front of the modern ice front, and based on historical imagery, was ice covered until the recent past. Initial 10Be results show an increase in concentrations of nearly an order of magnitude from the samples near the center of the glacial trough to those on the lateral margin, consistent with conceptual models of glacial erosion parameterized in terms of sliding velocity. Naïve exposure ages that assume no subglacial erosion range from 0.22 - 9.04 ka. More importantly, we can estimate erosion depths by assuming zero erosion of the highest concentration sample along the two transects and calculate the amount of material removed to yield the lower concentrations elsewhere along the two transects. Results indicate minimum erosion depths of 1-183 cm for most ice proximal transect and 7-56 cm for the more distal one.

Subsurface evaluation of the west parking lot and landfill 3 areas of Air Force Plant 4, Fort Worth, Texas, using two-dimensional direct-current resistivity profiling

USGS Publications Warehouse

Braun, Christopher L.; Jones, Sonya A.

2002-01-01

During September 1999, the U.S. Geological Survey made 10 two-dimensional direct-current resistivity profile surveys in the west parking lot and landfill 3 areas of Air Force Plant 4, Fort Worth, Texas, to identify subsurface areas of anomalously high or low resistivity that could indicate potential contamination, contaminant pathways, or anthropogenic structures. Six of the 10 surveys (transects) were in the west parking lot. Each of the inverted sections of these transects had anomalously high resistivities in the terrace alluvium/fill (the surficial subsurface layer) that probably were caused by highly resistive fill material. In addition, each of these transects had anomalously low resistivities in the Walnut Formation (a bedrock layer immediately beneath the alluvium/fill) that could have been caused by saturation of fractures within the Walnut Formation. A high-resistivity anomaly in the central part of the study area probably is associated with pea gravel fill used in construction of a French drain. Another high resistivity anomaly in the west parking lot, slightly southeast of the French drain, could be caused by dense nonaqueous-phase liquid in the Walnut Formation. The inverted sections of the four transects in the landfill 3 area tended to have slightly higher resistivities in both the alluvium/fill and the Walnut Formation than the transects in the west parking lot. The higher resistivities in the alluvium/fill could have been caused by drier conditions in grassy areas relative to conditions in the west parking lot. Higher resistivities in parts of the Walnut Formation also could be a function of drier conditions or variations in the lithology of the Walnut Formation. In addition to the 10 vertical sections, four horizontal sections at 2-meteraltitude intervals show generally increasing resistivity with decreasing altitude that most likely results from the increased influence of the Walnut Formation, which has a higher resistivity than the terrace alluvium/fill.

Evaluation of changes in vertical ground reaction forces as indicators of meniscal damage after transection of the cranial cruciate ligament in dogs.

PubMed

Trumble, Troy N; Billinghurst, R Clark; Bendele, Alison M; McIlwraith, C Wayne

2005-01-01

To determine whether decreases in peak vertical force of the hind limb after transection of the cranial cruciate ligament (CrCL) would be indicative of medial meniscal damage in dogs. 39 purpose-bred adult male Walker Hounds. The right CrCL was transected arthroscopically. Force plate measurements of the right hind limb were made prior to and 2, 4, 10, and 18 weeks after transection of the CrCL. Only dogs with > or =10% decreases in peak vertical force after week 2 were considered to have potential meniscal damage. Dogs that did not have > or =10% decreases in peak vertical force at any time point after week 2 were assigned to group 1. Group 2 dogs had > or =10% decreases in peak vertical force from weeks 2 to 4 only. Group 3 and 4 dogs had > or =10% decreases in peak vertical force from weeks 4 to 10 only or from weeks 10 to 18 only, respectively. Damage to menisci and articular cartilage was graded at week 18, and grades for groups 2 to 4 were compared with those of group 1. The percentage change in peak vertical force and impulse area was significantly different in groups 2 (n = 4), 3 (4), and 4 (4) at the end of each measurement period (weeks 4, 10, and 18, respectively) than in group 1 (27). The meniscal grade for groups 2 to 4 was significantly higher than for group 1. A > or =10% decrease in peak vertical force had sensitivity of 52% and accuracy of 72% for identifying dogs with moderate to severe medial meniscal damage. In dogs with transected or ruptured CrCLs, force plate analysis can detect acute exacerbation of lameness, which may be the result of secondary meniscal damage, and provide an objective noninvasive technique that delineates the temporal pattern of medial meniscal injury.

An assessment of natural biotransformation of petroleum hydrocarbons and chlorinated solvents at an aquifer plume transect

NASA Astrophysics Data System (ADS)

Skubal, Karen L.; Barcelona, Michael J.; Adriaens, Peter

2001-05-01

Field biogeochemical characterization and laboratory microcosm studies were performed to assess the potential for future biotransformation of trichloroethylene (TCE) and toluene in a plume containing petroleum hydrocarbons and chlorinated solvents at the former Wurtsmith Air Force Base in Oscoda, MI. In situ terminal electron accepting processes (TEAPs), contaminant composition and microbial phylogeny were studied at a plume transect 100 m downgradient of the source. The presence of reduced electron acceptors, relevant microbial communities, and elevated dissolved methane and carbon dioxide concentrations at the transect, as well as downgradient accumulation of BTEX metabolites and dechlorination products, indicated that past or current reductive dechlorination at the transect was likely driven by BTEX biodegradation in the methanogenic zone. However, TCE and toluene mineralization in sediment-groundwater microcosms without added electron acceptors did not exceed 5% during 300 days of incubation and was nearly invariant with original sediment TEAP, even following amendments of nitrogen and phosphorus. Mineralization rates were on the order of 0.0015-0.03 μmol/g day. After 8 months, microcosms showed evidence of methanogenesis, but CH 4 and CO 2 production arose from the degradation of contaminants other than toluene. Cis-dichloroethylene was observed in only one methanogenic microcosm after more than 500 days. It appears likely that spatially and temporally dynamic redox zonation at the plume transect will prevent future sustained reductive dehalogenation of highly chlorinated solvents, for during the course of a year, the predominant TEAP at the highly contaminated water table shifted from methanogenesis to iron- and sulfate-reduction. It is recommended that biotransformation studies combine considerations of long-term, spatially relevant changes in redox zonation with laboratory-scale studies of electron donor utilization and cometabolic substrate transformation to yield a more accurate assessment of natural bioattenuation of specific pollutants in aquifers contaminated by undefined organic waste mixtures.

Ground and surface water quality along a dambo transect in Chihota smallholder farming area, Marondera district, Zimbabwe

NASA Astrophysics Data System (ADS)

Wuta, M.; Nyamadzawo, G.; Mlambo, J.; Nyamugafata, P.

2016-04-01

In many smallholder farms in sub-Saharan Africa dambos are used for grazing and crop production especially horticultural crops. Increased use of dambos especially for crop production can result in ground and surface water pollution. Ground and surface water quality along a dambo transect in Chihota, Zimbabwe, was investigated between October 2013 and February 2014. The transect was divided into; upland (control), dambo gardens (mid-slope) and the river (valley bottom). Water samples for quality assessment were collected in October 2013 (peak of dry season) and February 2014 (peak of rainy season). The collected water samples were analysed for pH, faecal coliforms, total nitrogen, electrical conductivity, total dissolved solids (TDS), and some selected nutrients (P, K, Ca, Mg, Na, Zn, and Cu). Water pH was 7.0, 6.4 and 6.1 for river water, garden and upland wells respectively. During the wet season total nitrogen (TN) concentrations were 233 mg/L for uplands, 242 mg/L for gardens and 141 mg/L for the river. During the dry season, TN concentrations were all below 20 mg/L, and were not significantly different among sampling stations along the dambo transect. Dry season faecal coliform units (fcu) were significantly different and were 37.2, 30.0 and 5.0 for upland wells, garden wells and river respectively. Wet season faecal coliforms were also significantly different and were 428.5, 258.0 and 479.4 fcu for upland wells, garden wells and river respectively. The other measured physico-chemical parameters also varied with sampling position along the transect. It was concluded that TN and fcu in sampled water varied with season and that wet season concentrations were significantly higher than dry season concentrations. High concentrations of faecal coliforms and total N during the wet season was attributed to increased water movement. Water from upland wells, garden wells and river was not suitable for human consumption according to WHO standards during both the dry and wet seasons.

Rat Whisker Movement after Facial Nerve Lesion: Evidence for Autonomic Contraction of Skeletal Muscle

PubMed Central

Heaton, James T.; Sheu, Shu-Hsien; Hohman, Marc H.; Knox, Christopher J.; Weinberg, Julie S.; Kleiss, Ingrid J.; Hadlock, Tessa A.

2014-01-01

Vibrissal whisking is often employed to track facial nerve regeneration in rats; however, we have observed similar degrees of whisking recovery after facial nerve transection with or without repair. We hypothesized that the source of non-facial nerve-mediated whisker movement after chronic denervation was from autonomic, cholinergic axons traveling within the infraorbital branch of the trigeminal nerve (ION). Rats underwent unilateral facial nerve transection with repair (N=7) or resection without repair (N=11). Post-operative whisking amplitude was measured weekly across 10 weeks, and during intraoperative stimulation of the ION and facial nerves at ≥18 weeks. Whisking was also measured after subsequent ION transection (N=6) or pharmacologic blocking of the autonomic ganglia using hexamethonium (N=3), and after snout cooling intended to elicit a vasodilation reflex (N=3). Whisking recovered more quickly and with greater amplitude in rats that underwent facial nerve repair compared to resection (P<0.05), but individual rats overlapped in whisking amplitude across both groups. In the resected rats, non-facial-nerve mediated whisking was elicited by electrical stimulation of the ION, temporarily diminished following hexamethonium injection, abolished by transection of the ION, and rapidly and significantly (P<0.05) increased by snout cooling. Moreover, fibrillation-related whisker movements decreased in all rats during the initial recovery period (indicative of reinnervation), but re-appeared in the resected rats after undergoing ION transection (indicative of motor denervation). Cholinergic, parasympathetic axons traveling within the ION innervate whisker pad vasculature, and immunohistochemistry for vasoactive intestinal peptide revealed these axons branching extensively over whisker pad muscles and contacting neuromuscular junctions after facial nerve resection. This study provides the first behavioral and anatomical evidence of spontaneous autonomic innervation of skeletal muscle after motor nerve lesion, which not only has implications for interpreting facial nerve reinnervation results, but also calls into question whether autonomic-mediated innervation of striated muscle occurs naturally in other forms of neuropathy. PMID:24480367

Rat whisker movement after facial nerve lesion: evidence for autonomic contraction of skeletal muscle.

PubMed

Heaton, James T; Sheu, Shu Hsien; Hohman, Marc H; Knox, Christopher J; Weinberg, Julie S; Kleiss, Ingrid J; Hadlock, Tessa A

2014-04-18

Vibrissal whisking is often employed to track facial nerve regeneration in rats; however, we have observed similar degrees of whisking recovery after facial nerve transection with or without repair. We hypothesized that the source of non-facial nerve-mediated whisker movement after chronic denervation was from autonomic, cholinergic axons traveling within the infraorbital branch of the trigeminal nerve (ION). Rats underwent unilateral facial nerve transection with repair (N=7) or resection without repair (N=11). Post-operative whisking amplitude was measured weekly across 10weeks, and during intraoperative stimulation of the ION and facial nerves at ⩾18weeks. Whisking was also measured after subsequent ION transection (N=6) or pharmacologic blocking of the autonomic ganglia using hexamethonium (N=3), and after snout cooling intended to elicit a vasodilation reflex (N=3). Whisking recovered more quickly and with greater amplitude in rats that underwent facial nerve repair compared to resection (P<0.05), but individual rats overlapped in whisking amplitude across both groups. In the resected rats, non-facial-nerve-mediated whisking was elicited by electrical stimulation of the ION, temporarily diminished following hexamethonium injection, abolished by transection of the ION, and rapidly and significantly (P<0.05) increased by snout cooling. Moreover, fibrillation-related whisker movements decreased in all rats during the initial recovery period (indicative of reinnervation), but re-appeared in the resected rats after undergoing ION transection (indicative of motor denervation). Cholinergic, parasympathetic axons traveling within the ION innervate whisker pad vasculature, and immunohistochemistry for vasoactive intestinal peptide revealed these axons branching extensively over whisker pad muscles and contacting neuromuscular junctions after facial nerve resection. This study provides the first behavioral and anatomical evidence of spontaneous autonomic innervation of skeletal muscle after motor nerve lesion, which not only has implications for interpreting facial nerve reinnervation results, but also calls into question whether autonomic-mediated innervation of striated muscle occurs naturally in other forms of neuropathy. Copyright © 2014 IBRO. Published by Elsevier Ltd. All rights reserved.

Transplants of Neurotrophin-Producing Autologous Fibroblasts Promote Recovery of Treadmill Stepping in the Acute, Sub-Chronic, and Chronic Spinal Cat.

PubMed

Krupka, Alexander J; Fischer, Itzhak; Lemay, Michel A

2017-05-15

Adult cats show limited spontaneous locomotor capabilities following spinal transection, but recover treadmill stepping with body-weight-supported training. Delivery of neurotrophic factors such as brain-derived neurotrophic factor (BDNF) and neurotrophic factor 3 (NT-3) can substitute for body-weight-supported training, and promotes a similar recovery in a shorter period of time. Autologous cell grafts would negate the need for the immunosuppressive agents currently used with most grafts, but have not shown functional benefits in incomplete spinal cord injury models and have never been tested in complete transection or chronic injury models. In this study, we explored the effects of autologous fibroblasts, prepared from the individual cats and modified to produce BDNF and NT-3, on the recovery of locomotion in acute, sub-chronic and chronic full-transection models of spinal injury. Fourteen female cats underwent complete spinal transection at T11/T12. Cats were separated into four groups: sham graft at the time of injury, and BDNF and NT-3 producing autologous fibroblasts grafted at the time of injury, 2 weeks after injury, or 6 weeks after injury. Kinematics were recorded 3 and 5 weeks after cell graft. Additional kinematic recordings were taken for some cats until 12 weeks post-graft. Eleven of 12 cats with neurotrophin-producing grafts recovered plantar weight-bearing stepping at treadmill speeds from 0.3 to 0.8 m/sec within 5 weeks of grafting, whereas control cats recovered poor quality stepping at low speeds only (≤ 0.4 m/sec). Further, kinematic measures in cats with grafts were closer to pre-transection values than those for controls, and recovery was maintained up to 12 weeks post-grafting. Our results show that not only are autologous neurotrophin-producing grafts effective at promoting recovery of locomotion, but that delayed delivery of neurotrophins does not diminish the therapeutic effect, and may improve outcome.

Transplants of Neurotrophin-Producing Autologous Fibroblasts Promote Recovery of Treadmill Stepping in the Acute, Sub-Chronic, and Chronic Spinal Cat

PubMed Central

Krupka, Alexander J.; Fischer, Itzhak

2017-01-01

Abstract Adult cats show limited spontaneous locomotor capabilities following spinal transection, but recover treadmill stepping with body-weight-supported training. Delivery of neurotrophic factors such as brain-derived neurotrophic factor (BDNF) and neurotrophic factor 3 (NT-3) can substitute for body-weight-supported training, and promotes a similar recovery in a shorter period of time. Autologous cell grafts would negate the need for the immunosuppressive agents currently used with most grafts, but have not shown functional benefits in incomplete spinal cord injury models and have never been tested in complete transection or chronic injury models. In this study, we explored the effects of autologous fibroblasts, prepared from the individual cats and modified to produce BDNF and NT-3, on the recovery of locomotion in acute, sub-chronic and chronic full-transection models of spinal injury. Fourteen female cats underwent complete spinal transection at T11/T12. Cats were separated into four groups: sham graft at the time of injury, and BDNF and NT-3 producing autologous fibroblasts grafted at the time of injury, 2 weeks after injury, or 6 weeks after injury. Kinematics were recorded 3 and 5 weeks after cell graft. Additional kinematic recordings were taken for some cats until 12 weeks post-graft. Eleven of 12 cats with neurotrophin-producing grafts recovered plantar weight-bearing stepping at treadmill speeds from 0.3 to 0.8 m/sec within 5 weeks of grafting, whereas control cats recovered poor quality stepping at low speeds only (≤ 0.4 m/sec). Further, kinematic measures in cats with grafts were closer to pre-transection values than those for controls, and recovery was maintained up to 12 weeks post-grafting. Our results show that not only are autologous neurotrophin-producing grafts effective at promoting recovery of locomotion, but that delayed delivery of neurotrophins does not diminish the therapeutic effect, and may improve outcome. PMID:27829315

Analysis of stable isotope ratios (δ18O and δ2H) in precipitation of the Verde River watershed, Arizona 2003 through 2014

USGS Publications Warehouse

Beisner, Kimberly R.; Paretti, Nicholas V.; Tucci, Rachel S.

2016-04-25

Stable isotope delta values (δ18O and δ2H) of precipitation can vary with elevation, and quantification of the precipitation elevation gradient can be used to predict recharge elevation within a watershed. Precipitation samples were analyzed for stable isotope delta values between 2003 and 2014 from the Verde River watershed of north-central Arizona. Results indicate a significant decrease in summer isotopic values overtime at 3,100-, 4,100-, 6,100-, 7,100-, and 8,100-feet elevation. The updated local meteoric water line for the area is δ2H = 7.11 δ18O + 3.40. Equations to predict stable isotopic values based on elevation were updated from previous publications in Blasch and others (2006), Blasch and Bryson (2007), and Bryson and others (2007). New equations were separated for samples from the Camp Verde to Flagstaff transect and the Prescott to Chino Valley transect. For the Camp Verde to Flagstaff transect, the new equations for winter precipitation are δ18O = -0.0004z − 8.87 and δ2H = -0.0029z − 59.8 (where z represents elevation in feet) and the summer precipitation equations were not statistically significant. For the Prescott to Chino Valley transect, the new equations for summer precipitation are δ18O = -0.0005z − 3.22 and δ2H = -0.0022z − 27.9; the winter precipitation equations were not statistically significant and, notably, stable isotope values were similar across all elevations. Interpretation of elevation of recharge contributing to surface and groundwaters in the Verde River watershed using the updated equations for the Camp Verde to Flagstaff transect will give lower elevation values compared with interpretations presented in the previous studies. For waters in the Prescott and Chino Valley area, more information is needed to understand local controls on stable isotope values related to elevation.

Nevada Monitoring System to Assess Climate Variability and Change

NASA Astrophysics Data System (ADS)

Devitt, D. A.; Arnone, J.; Biondi, F.; Fenstermaker, L. F.; Saito, L.; Young, M.; Riddle, B.; Strachan, S. D.; Bird, B.; McCurdy, G.; Lyles, B. F.

2010-12-01

The Nevada System of Higher Education (University of Nevada Las Vegas, University of Nevada Reno and the Desert Research Institute) was awarded a multiyear NSF EPSCoR grant to support infrastructure associated with regional climate change research. The overall project is comprised of 5 components: education, cyberinfrastructure, policy, climate modeling and water/ecology. The water and ecology components are using their infrastructure funding for the assessment of climate variability and change on ecosystem function and hydrologic services. A series of 10 m tall towers are under construction and are being equipped with a wide array of sensors to monitor atmospheric, soil and plant parameters over time. The towers are located within the Mojave and Great Basin Deserts in two transects; the Mojave Desert transect is located in the southern Nevada Sheep Mountain Range and the Great Basin transect is located in the east central Nevada Snake Mountain Range. The towers are centrally positioned in well-defined vegetation zones. In southern Nevada these zones are represented by the following plant species: Creosote/Bursage (Creosotebush scrub zone); Blackbrush/Joshua Tree (Blackbrush zone); Pinyon/ Juniper (pygmy conifer zone), Ponderosa Pine (montane zone) and Bristlecone Pine (subalpine zone). The Snake Mountain transect incorporates the eastern and western valleys on both sides of the mountain range. The vegetation zones are represented by: Greasewood and mixed shrub (salt desert zone); Big Sage (sagebrush zone); Pinyon/Juniper (pygmy conifer zone); White/Douglas Fir, Ponderosa Pine and Aspen (montane zone); and Bristlecone/Limber Pine and Engelmann Spruce (subalpine zone). We are currently in the third year of funding with a goal of having the majority of towers fully operational by winter 2010. In close collaboration with our cyberinfrastructure component team, all data acquired from the transect monitoring stations will be made available to other researchers and the public in Nevada and elsewhere, cooperating agencies and organizations, and State of Nevada land managers.

AmeriFlux US-CZ4 Sierra Critical Zone, Sierra Transect, Subalpine Forest, Shorthair

DOE Office of Scientific and Technical Information (OSTI.GOV)

Goulden, Michael

This is the AmeriFlux version of the carbon flux data for the site US-CZ4 Sierra Critical Zone, Sierra Transect, Subalpine Forest, Shorthair. Site Description - Half hourly data are available at https://www.ess.uci.edu/~california/. This site is one of four Southern Sierra Critical Zone Observatory flux towers operated along an elevation gradient (sites are USCZ1, USCZ2, USCZ3 and USCZ4). This site is a lodgepole pine subalpine woodland with no recent disturbance.

Sonographic assessment of volar digital nerve injury in the context of penetrating trauma.

PubMed

Umans, Hilary; Kessler, James; de la Lama, Mauricio; Magge, Keshav; Liebling, Ralph; Negron, Judith

2010-05-01

The purpose of this article was to report our experience using ultrasound to assess digital nerve integrity after penetrating hand trauma with sensory deficit. Ultrasound was performed in the long axis on 22 digital nerves in 11 patients using a 12-14-MHz linear array hockey stick transducer. Of 22 volar digital nerves evaluated by sonography, six were transected. All imaging findings were confirmed surgically. High-frequency ultrasound permits accurate imaging of intact and transected volar digital nerves.

Diagnostic Tools for Performance Evaluation of Innovative In-Situ Remediation Technologies at Chlorinated Solvent-Contaminated Sites

DTIC Science & Technology

2011-07-01

Florida: Dr. Michael Annable, Dr. Kirk Hatfield • Air Force Institute of Technology: Dr. Mark Goltz , Dr. Junqi Huang • United States (U.S.) Environmental...somewhat less than (e.g., 70% of) the natural groundwater flow through the transect (Yoon, 2006; Goltz et al., 2007b). Once the calculated mass...approach ( Goltz et al., 2007a; Wheeldon, 2008) is then used to estimate the mass discharge through the transect. Each RFM application typically

[Traumatic rupture of the pancreatic isthmus complicated by concomitant rupture of the duodenum and right kidney].

PubMed

Campagnoni, Arcangelo Pesenti; Cossard, David; Biandrate, Ferruccio; Piccolini, Marco; Francia, Luigi; Ambrosino, Giovanni; Zadra, Francesca Maria; Rosa, Cesare; Battaglia, Antonio; Pandolfi, Umberto

2005-01-01

The Authors describe a case of complete traumatic transection of the pancreatic isthmus associated with complete transection of the first portion of the duodenum and the isthmus of a horseshoe kidney. The treatment of the pancreatic lesion was intestinal drainage of the distal portion of the pancreas and closure of the proximal one. The authors stress the advantages and good outcome of the conservative operation, performed at an early stage, with the clinical indications and adequate surgical techniques.

Evaluation of multiple-frequency, active and passive acoustics as surrogates for bedload transport

USGS Publications Warehouse

Wood, Molly S.; Fosness, Ryan L.; Pachman, Gregory; Lorang, Mark; Tonolla, Diego

2015-01-01

The use of multiple-frequency, active acoustics through deployment of acoustic Doppler current profilers (ADCPs) shows potential for estimating bedload in selected grain size categories. The U.S. Geological Survey (USGS), in cooperation with the University of Montana (UM), evaluated the use of multiple-frequency, active and passive acoustics as surrogates for bedload transport during a pilot study on the Kootenai River, Idaho, May 17-18, 2012. Four ADCPs with frequencies ranging from 600 to 2000 kHz were used to measure apparent moving bed velocities at 20 stations across the river in conjunction with physical bedload samples. Additionally, UM scientists measured the sound frequencies of moving particles with two hydrophones, considered passive acoustics, along longitudinal transects in the study reach. Some patterns emerged in the preliminary analysis which show promise for future studies. Statistically significant relations were successfully developed between apparent moving bed velocities measured by ADCPs with frequencies 1000 and 1200 kHz and bedload in 0.5 to 2.0 mm grain size categories. The 600 kHz ADCP seemed somewhat sensitive to the movement of gravel bedload in the size range 8.0 to 31.5 mm, but the relation was not statistically significant. The passive hydrophone surveys corroborated the sample results and could be used to map spatial variability in bedload transport and to select a measurement cross-section with moving bedload for active acoustic surveys and physical samples.

Simulating forest productivity along a neotropical elevational transect: temperature variation and carbon use efficiency

NASA Astrophysics Data System (ADS)

Marthews, T.; Malhi, Y.; Girardin, C.; Silva-Espejo, J.; Aragão, L.; Metcalfe, D.; Rapp, J.; Mercado, L.; Fisher, R.; Galbraith, D.; Fisher, J.; Salinas-Revilla, N.; Friend, A.; Restrepo-Coupe, N.; Williams, R.

2012-04-01

A better understanding of the mechanisms controlling the magnitude and sign of carbon components in tropical forest ecosystems is important for reliable estimation of this important regional component of the global carbon cycle. We used the JULES vegetation model to simulate all components of the carbon balance at six sites along an Andes-Amazon transect across Peru and Brazil and compared the results to published field measurements. In the upper montane zone the model predicted a vegetation dieback, indicating a need for better parameterisation of cloud forest vegetation. In the lower montane and lowland zones simulated ecosystem productivity and respiration were predicted with reasonable accuracy, although not always within the error bounds of the observations. Model-predicted carbon use efficiency in this transect surprisingly did not increase with elevation, but remained close to the 'temperate' value 0.5. This may be explained by elevational changes in the balance between growth and maintenance respiration within the forest canopy, as controlled by both temperature- and pressure-mediated processes.

Synchrotron X-ray microtransections: a non invasive approach for epileptic seizures arising from eloquent cortical areas

PubMed Central

Pouyatos, B.; Nemoz, C.; Chabrol, T.; Potez, M.; Bräuer, E.; Renaud, L.; Pernet-Gallay, K.; Estève, F.; David, O.; Kahane, P.; Laissue, J. A.; Depaulis, A.; Serduc, R.

2016-01-01

Synchrotron-generated X-ray (SRX) microbeams deposit high radiation doses to submillimetric targets whilst minimizing irradiation of neighboring healthy tissue. We developed a new radiosurgical method which demonstrably transects cortical brain tissue without affecting adjacent regions. We made such image-guided SRX microtransections in the left somatosensory cortex in a rat model of generalized epilepsy using high radiation doses (820 Gy) in thin (200 μm) parallel slices of tissue. This procedure, targeting the brain volume from which seizures arose, altered the abnormal neuronal activities for at least 9 weeks, as evidenced by a decrease of seizure power and coherence between tissue slices in comparison to the contralateral cortex. The brain tissue located between transections stayed histologically normal, while the irradiated micro-slices remained devoid of myelin and neurons two months after irradiation. This pre-clinical proof of concept highlights the translational potential of non-invasive SRX transections for treating epilepsies that are not eligible for resective surgery. PMID:27264273

Field-based evaluations of sampling techniques to support long-term monitoring of riparian ecosystems along wadeable streams on the Colorado Plateau

USGS Publications Warehouse

Scott, Michael L.; Reynolds, Elizabeth W.

2007-01-01

Compared to 5-m by 20-m tree quadrats, belt transects were shown to provide similar estimates of stand structure (stem density and stand basal area) in less than 30 percent of the time. Further, for the streams sampled, there were no statistically significant differences in stem density and basal area estimates between 10-m and 20-m belt transects and the smaller belts took approximately half the time to sample. There was, however, high variance associated with estimates of stand structure for infrequently occurring stems, such as large, relict or legacy riparian trees. Legacy riparian trees occurred in limited numbers at all sites sampled. A reachscale population census of these trees indicated that the 10-m belt transects tended to underestimate both stem density and basal area for these riparian forest elements and that a complete reach-scale census of legacy trees averaged less than one hour per site.

Importance of designated thoracic trauma surgeons in the management of traumatic aortic transection.

PubMed

Albrink, M H; Rodriguez, E; England, G J; McKeown, P P; Hurst, J M; Rosemurgy, A S

1994-04-01

The medical literature is replete with reports on traumatic aortic transection. These reports have delineated many factors regarding the morbidity and high mortality of this ominous injury. Most reports are reviews of the collective experience of a single institution over a period of years. It is likely that many authors writing on the subject of traumatic aortic transection have no experience with operative repair of the lesion. There has been debate about the various techniques of primary repair versus graft insertion, as well as the question of whether cardiopulmonary bypass is superior to the "clamp and sew" methods. No studies have directly examined the skills of individual surgeons with respect to outcome. We present the results of a study from a university-affiliated level I trauma center in which the outcomes from various groups of surgeons were compared over a 5-year period. The information in this study strongly suggests that designated thoracic trauma surgeons who are promptly available and have dedicated interests in trauma patients achieve better results.

The influence of surgical transection and anastomosis on the rate of cell proliferation in the colonic epithelium of normal and DMH-treated rats.

PubMed

Barkla, D H; Tutton, P M

1983-10-01

Normal and DMH-treated male rats aged 18-20 weeks underwent surgical transection and anastomosis of the transverse colon. Animals were subsequently killed at intervals of 14, 30 and 72 days. Three hours prior to sacrifice animals were injected with vinblastine sulphate and mitotic indices were subsequently estimated in histological sections. Possible differences between experimental and control groups were tested using a Student's t-test. The results show that the accumulated mitotic indices in normal and DMH-treated colon are statistically similar. The results also show that transection and anastomosis stimulates cell division in both normal and DMH-treated colon and that the increase is of greater amplitude and more prolonged duration in the DMH-treated rats. Carcinomas developed close to the line of anastomosis in DMH-treated but not in control rats. The results support the hypothesis that non-specific injury to hyperplastic colonic epithelium promotes carcinogenesis.

Synchrotron X-ray microtransections: a non invasive approach for epileptic seizures arising from eloquent cortical areas

NASA Astrophysics Data System (ADS)

Pouyatos, B.; Nemoz, C.; Chabrol, T.; Potez, M.; Bräuer, E.; Renaud, L.; Pernet-Gallay, K.; Estève, F.; David, O.; Kahane, P.; Laissue, J. A.; Depaulis, A.; Serduc, R.

2016-06-01

Synchrotron-generated X-ray (SRX) microbeams deposit high radiation doses to submillimetric targets whilst minimizing irradiation of neighboring healthy tissue. We developed a new radiosurgical method which demonstrably transects cortical brain tissue without affecting adjacent regions. We made such image-guided SRX microtransections in the left somatosensory cortex in a rat model of generalized epilepsy using high radiation doses (820 Gy) in thin (200 μm) parallel slices of tissue. This procedure, targeting the brain volume from which seizures arose, altered the abnormal neuronal activities for at least 9 weeks, as evidenced by a decrease of seizure power and coherence between tissue slices in comparison to the contralateral cortex. The brain tissue located between transections stayed histologically normal, while the irradiated micro-slices remained devoid of myelin and neurons two months after irradiation. This pre-clinical proof of concept highlights the translational potential of non-invasive SRX transections for treating epilepsies that are not eligible for resective surgery.

Distribution, Sources, and Association of Polycyclic Aromatic Hydrocarbons, Black Carbon, and Total Organic Carbon in Size-Segregated Soil Samples Along a Background–Urban–Rural Transect

PubMed Central

Ray, Sharmila; Khillare, Pandit Sudan; Kim, Ki-Hyun; Brown, Richard J.C.

2012-01-01

Abstract Soil samples were collected over a year-long period along a background–urban–rural transect in Delhi, India for the analysis of polycyclic aromatic hydrocarbons (PAHs), black carbon (BC), and total organic carbon (TOC) in five grain size fractions, x, in μm of 0≤x<53 (I), 53≤x<250 (II), 250≤x<500 (III), 500≤x<2000 (IV), and their sum (total: T). Maximum concentrations of PAH, BC, and TOC were observed in the smallest fraction (I) comprising silt and clay, irrespective of site or season. Results of the molecular diagnostic ratios and principal component analysis (PCA) identified coal, wood, biomass burning, and vehicular emissions as major sources of PAHs at all the three sites, while BC/TOC ratios pointed toward biomass combustion as the chief source of carbonaceous species. This work presents the first such rural-urban transect study considering PAH, BC, and TOC in soil. PMID:23133309

Methodology for Augmenting Existing Paths with Additional Parallel Transects

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wilson, John E.

2013-09-30

Visual Sample Plan (VSP) is sample planning software that is used, among other purposes, to plan transect sampling paths to detect areas that were potentially used for munition training. This module was developed for application on a large site where existing roads and trails were to be used as primary sampling paths. Gap areas between these primary paths needed to found and covered with parallel transect paths. These gap areas represent areas on the site that are more than a specified distance from a primary path. These added parallel paths needed to optionally be connected together into a single path—themore » shortest path possible. The paths also needed to optionally be attached to existing primary paths, again with the shortest possible path. Finally, the process must be repeatable and predictable so that the same inputs (primary paths, specified distance, and path options) will result in the same set of new paths every time. This methodology was developed to meet those specifications.« less

Case of pituitary stalk transection syndrome ascertained after breech delivery.

PubMed

Fukuta, Kaori; Hidaka, Takao; Ono, Yosuke; Kochi, Keiko; Yasoshima, Kuniaki; Arai, Takashi

2016-02-01

Pituitary stalk transection syndrome (PSTS) is a rare complication that can accompany breech delivery. Early diagnosis of this syndrome is difficult, and it may cause a serious delay in the diagnosis. We present a case of PSTS ascertained after breech delivery. A 20-year-old woman presented with primary amenorrhea. The patient was born by breech delivery and had a history of treatment for pituitary dwarfism. Her laboratory findings showed pituitary hypothyroidism, and hormone replacement therapy was initiated. At 28 years old, she became pregnant and had a normal delivery at 38 weeks' gestation. One year after delivery, her thyroid hormone level changed. Laboratory test showed adrenocortical insufficiency, and magnetic resonance imaging of the pituitary gland showed transection of the pituitary stalk and development of an ectopic posterior lobe. These findings were compatible with PSTS. When a patient who has been born by breech delivery presents with symptoms of pituitary deficiency, PSTS should be considered in the differential diagnosis. © 2015 Japan Society of Obstetrics and Gynecology.

The use of color infrared photography for wetlands mapping with special reference to shoreline and waterfowl habitat assessment

NASA Technical Reports Server (NTRS)

1973-01-01

Evaluation of low altitude oblique photography obtained by hand-held cameras was useful in determining specifications of operational mission requirements for conventional smaller-scaled vertical photography. Remote sensing techniques were used to assess the rapid destruction of marsh areas at Pointe Mouillee. In an estuarian environment where shoreline features change yearly, there is a need for revision in existing area maps. A land cover inventory, mapped from aerial photography, provided essential data necessary for determining adjacent lands suitable for marshland development. To quantitatively assess the wetlands environment, a detailed inventory of vegetative communities (19 categories) was made using color infrared photography and intensive ground truth. A carefully selected and well laid-out transect was found to be a key asset to photointerpretation and to the analysis of vegetative conditions. Transect data provided the interpreter with locally representative areas of various vegetative types. This facilitated development of a photointerpretation key. Additional information on vegetative conditions in the area was also obtained by evaluating the transect data.

Overview and diagnosis of multiple sclerosis.

PubMed

Hunter, Samuel F

2016-06-01

Multiple sclerosis (MS), a chronic inflammatory disease of unknown etiology, involves an immunemediated attack of the central nervous system (CNS) that produces demyelination and axonal/neuronal damage, resulting in characteristic multifocal lesions apparent on magnetic resonance imaging and a variety of neurologic manifestations. The disease pathology is characterized by multifocal lesions within the CNS, in both the white matter and gray matter, with perivenular inflammatory cell infiltrates, demyelination, axonal transection, neuronal degeneration, and gliosis. MS pathogenesis is complex, as it involves both T- and B-cell mechanisms and is heterogeneous in presentation. Relatively recently, the historical 4 core clinical categories of MS were revised in an effort to improve characterization of the clinical course, better identify where a given patient is positioned in the disease spectrum, and to guide clinical studies. In young and middle-aged adults, MS is one of the most common contributors to neurologic disability, and it exerts detrimental effects on a patient's productivity and health-related quality of life. Typically, patients with MS have a long life span, although healthcare utilization increases over time. As a consequence, the disease places a substantial burden on patients and their caregivers/families, as well as employers, the healthcare system, and society.

Effect of Calendula officinalis cream on achilles tendon healing.

PubMed

Aro, A A; Perez, M O; Vieira, C P; Esquisatto, M A M; Rodrigues, R A F; Gomes, L; Pimentel, E R

2015-02-01

In recent years, the scientific community has undertaken research on plant extracts, searching for compounds with pharmacological activities that can be used in diverse fields of medicine. Calendula officinalis L. is known to have antioxidant, anti-inflammatory, antibacterial, and wound healing properties when used to treat skin burns. Therefore, the purpose of this study was to analyze the effects of C. officinalis on the initial phase of Achilles tendon healing. Wistar rats were separated in three groups: Calendula (Cal)-rats with a transected tendon were treated with topical applications of C. officinalis cream and then euthanized 7 days after injury; Control (C)-rats were treated with only vehicle after transection; and Normal (N)-rats without tenotomy. Higher concentrations of hydroxyproline (an indicator of total collagen) and non-collagenous proteins were observed in the Cal group in relation to the C group. Zymography showed no difference in the amount of the isoforms of metalloproteinase-2 and of metalloproteinase-9, between C and Cal groups. Polarization microscopy images analysis showed that the Cal group presented a slightly higher birefringence compared with the C group. In sections of tendons stained with toluidine blue, the transected groups presented higher metachromasy as compared with the N group. Immunocytochemistry analysis for chondroitin-6-sulfate showed no difference between the C and Cal groups. In conclusion, the topical application of C. officinalis after tendon transection increases the concentrations of collagen and non-collagenous proteins, as well as the collagen organization in the initial phase of healing. © 2014 Wiley Periodicals, Inc.

Liver parenchyma transection-first approach in hemihepatectomy with en bloc caudate lobectomy for hilar cholangiocarcinoma: A safe technique to secure favorable surgical outcomes.

PubMed

Kawabata, Yasunari; Hayashi, Hikota; Yano, Seiji; Tajima, Yoshitsugu

2017-06-01

Although hemihepatectomy with total caudate lobectomy (hemiHx-tc) is essential for the surgical treatment of hilar cholangiocarcinoma, the advantage of an anterior approach for hemiHx-tc has not been fully discussed technically; the significance of an anterior approach without liver mobilization for preventing infectious complications also remains unknown. The liver parenchyma transection-first approach (Hp-first) technique is an early transection of the hepatic parenchyma without mobilization of the liver that utilizes a modified liver-hanging maneuver to avoid damaging the future remnant liver. Between May 2010 and August 2016, a total of 40 consecutive patients underwent surgery for hilar cholangiocarcinoma. Of these, 19 patients underwent a conventional hemihepatectomy with total caudate lobectomy (cHx), while 21 patients received a Hp-first. The patients in the Hp-first group had significantly less intraoperative blood loss (P < 0.001) and blood transfusion (P < 0.001), a lower incidence of postoperative hyperbilirubinemia (p = 0.023), a lower incidence of liver failure (p = 0.038), a lower hospital death rate (p = 0.042), and a better 2-year disease-free survival rate (p = 0.010) than those in the cHx group. The liver parenchyma transection-first approach is the preferred technique for hemiHx-tc in hilar cholangiocarcinoma because it resulted in improved surgical outcomes as compared with the conventional approach. © 2017 Wiley Periodicals, Inc.

Effects of pelvic, pudendal, or hypogastric nerve cuts on Fos induction in the rat brain following vaginocervical stimulation.

PubMed

Pfaus, James G; Manitt, Colleen; Coopersmith, Carol B

2006-12-30

In the female rat, genitosensory input is conveyed to the central nervous system predominantly through the pelvic, pudendal, and hypogastric nerves. The present study examined the relative contribution of those three nerves in the expression of Fos immunoreactivity within brain regions previously shown to be activated by vaginocervical stimulation (VCS). Bilateral transection of those nerves, or sham neurectomy, was conducted in separate groups of ovariectomized, sexually-experienced females. After recovery, females were primed with estrogen and progesterone and given either 50 manual VCSs with a lubricated glass rod over the course of 1 h. VCS increased the number of neurons expressing Fos immunoreactivity in the medial preoptic area, lateral septum, bed nucleus of the stria terminalis, ventromedial hypothalamus, and medial amygdala of sham neurectomized females. Transection of the pelvic nerve reduced Fos immunoreactivity in the medial preoptic area, bed nucleus of the stria terminalis, ventromedial hypothalamus, and medial amygdala, whereas transection of the pudendal nerve had no effect. In contrast, transection of the hypogastric nerve increased Fos immunoreactivity in the medial preoptic area and lateral septum, whereas transaction of the pelvic nerve increased Fos immunoreactivity in the lateral septum, following VCS. All females given VCS, except those with pelvic neurectomy, displayed a characteristic immobility during each application. These data confirm that the pelvic nerve is largely responsible for the neural and behavioral effects of VCS, and support a separate function for the hypogastric nerve.

Ecohydrological optimality in the Northeast China Transect

NASA Astrophysics Data System (ADS)

Cong, Zhentao; Li, Qinshu; Mo, Kangle; Zhang, Lexin; Shen, Hong

2017-05-01

The Northeast China Transect (NECT) is one of the International Geosphere-Biosphere Program (IGBP) terrestrial transects, where there is a significant precipitation gradient from east to west, as well as a vegetation transition of forest-grassland-desert. It is remarkable to understand vegetation distribution and dynamics under climate change in this transect. We take canopy cover (M), derived from Normalized Difference Vegetation Index (NDVI), as an index to describe the properties of vegetation distribution and dynamics in the NECT. In Eagleson's ecohydrological optimality theory, the optimal canopy cover (M*) is determined by the trade-off between water supply depending on water balance and water demand depending on canopy transpiration. We apply Eagleson's ecohydrological optimality method in the NECT based on data from 2000 to 2013 to get M*, which is compared with M from NDVI to further discuss the sensitivity of M* to vegetation properties and climate factors. The result indicates that the average M* fits the actual M well (for forest, M* = 0.822 while M = 0.826; for grassland, M* = 0.353 while M = 0.352; the correlation coefficient between M and M* is 0.81). Results of water balance also match the field-measured data in the references. The sensitivity analyses show that M* decreases with the increase of leaf area index (LAI), stem fraction and temperature, while it increases with the increase of leaf angle and precipitation amount. Eagleson's ecohydrological optimality method offers a quantitative way to understand the impacts of climate change on canopy cover and provides guidelines for ecorestoration projects.

Cloud transitions: comparison of temporal variation in the southeastern Pacific with the spatial variation in the northeastern Pacific at low latitudes

DOE PAGES

Yu, Haiyang; Zhang, Minghua; Lin, Wuyin; ...

2016-10-14

The seasonal variation of clouds in the southeastern equatorial Pacific (SEP) is analysed and compared with the spatial variation of clouds in the northeastern Pacific along the Global Energy and Water Cycle Experiment Cloud System Study/Working Group on Numerical Experimentation (GCSS/WGNE) Pacific Cross-Section Intercomparison (GPCI) transect. A ‘seasonal cloud transition’ – from stratocumulus to shallow cumulus and eventually to deep convection – is found in the SEP from September to April, which is similar to the spatial cloud transition along the GPCI transect from the California coast to the equator. It is shown that this seasonal cloud transition in themore » SEP is associated with increasing sea surface temperature (SST), decreasing lower tropospheric stability and large-scale subsidence, which are all similar to the spatial variation of these fields along the GPCI transect. There was a difference found such that the SEP cloud transition is associated with decreasing surface wind speed and surface latent heat flux, weaker larger-scale upward motion and convective instability, which lead to less deepening of the low clouds and less frequent deep convection than those in the GPCI transect. Finally, the seasonal cloud transition in the SEP provides a test for climate models to simulate the relationships between clouds and large-scale atmospheric fields in a region that features a spurious double inter-tropical convergence zone (ITCZ) in most models.« less

Cloud transitions: comparison of temporal variation in the southeastern Pacific with the spatial variation in the northeastern Pacific at low latitudes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yu, Haiyang; Zhang, Minghua; Lin, Wuyin

The seasonal variation of clouds in the southeastern equatorial Pacific (SEP) is analysed and compared with the spatial variation of clouds in the northeastern Pacific along the Global Energy and Water Cycle Experiment Cloud System Study/Working Group on Numerical Experimentation (GCSS/WGNE) Pacific Cross-Section Intercomparison (GPCI) transect. A ‘seasonal cloud transition’ – from stratocumulus to shallow cumulus and eventually to deep convection – is found in the SEP from September to April, which is similar to the spatial cloud transition along the GPCI transect from the California coast to the equator. It is shown that this seasonal cloud transition in themore » SEP is associated with increasing sea surface temperature (SST), decreasing lower tropospheric stability and large-scale subsidence, which are all similar to the spatial variation of these fields along the GPCI transect. There was a difference found such that the SEP cloud transition is associated with decreasing surface wind speed and surface latent heat flux, weaker larger-scale upward motion and convective instability, which lead to less deepening of the low clouds and less frequent deep convection than those in the GPCI transect. Finally, the seasonal cloud transition in the SEP provides a test for climate models to simulate the relationships between clouds and large-scale atmospheric fields in a region that features a spurious double inter-tropical convergence zone (ITCZ) in most models.« less

Statistical Algorithms for Designing Geophysical Surveys to Detect UXO Target Areas

DOE Office of Scientific and Technical Information (OSTI.GOV)

O'Brien, Robert F.; Carlson, Deborah K.; Gilbert, Richard O.

2005-07-29

The U.S. Department of Defense is in the process of assessing and remediating closed, transferred, and transferring military training ranges across the United States. Many of these sites have areas that are known to contain unexploded ordnance (UXO). Other sites or portions of sites are not expected to contain UXO, but some verification of this expectation using geophysical surveys is needed. Many sites are so large that it is often impractical and/or cost prohibitive to perform surveys over 100% of the site. In that case, it is particularly important to be explicit about the performance required of the survey. Thismore » article presents the statistical algorithms developed to support the design of geophysical surveys along transects (swaths) to find target areas (TAs) of anomalous geophysical readings that may indicate the presence of UXO. The algorithms described here determine 1) the spacing between transects that should be used for the surveys to achieve a specified probability of traversing the TA, 2) the probability of both traversing and detecting a TA of anomalous geophysical readings when the spatial density of anomalies within the TA is either uniform (unchanging over space) or has a bivariate normal distribution, and 3) the probability that a TA exists when it was not found by surveying along transects. These algorithms have been implemented in the Visual Sample Plan (VSP) software to develop cost-effective transect survey designs that meet performance objectives.« less

Statistical Algorithms for Designing Geophysical Surveys to Detect UXO Target Areas

DOE Office of Scientific and Technical Information (OSTI.GOV)

O'Brien, Robert F.; Carlson, Deborah K.; Gilbert, Richard O.

2005-07-28

The U.S. Department of Defense is in the process of assessing and remediating closed, transferred, and transferring military training ranges across the United States. Many of these sites have areas that are known to contain unexploded ordnance (UXO). Other sites or portions of sites are not expected to contain UXO, but some verification of this expectation using geophysical surveys is needed. Many sites are so large that it is often impractical and/or cost prohibitive to perform surveys over 100% of the site. In such cases, it is particularly important to be explicit about the performance required of the surveys. Thismore » article presents the statistical algorithms developed to support the design of geophysical surveys along transects (swaths) to find target areas (TAs) of anomalous geophysical readings that may indicate the presence of UXO. The algorithms described here determine (1) the spacing between transects that should be used for the surveys to achieve a specified probability of traversing the TA, (2) the probability of both traversing and detecting a TA of anomalous geophysical readings when the spatial density of anomalies within the TA is either uniform (unchanging over space) or has a bivariate normal distribution, and (3) the probability that a TA exists when it was not found by surveying along transects. These algorithms have been implemented in the Visual Sample Plan (VSP) software to develop cost-effective transect survey designs that meet performance objectives.« less

Early in vivo changes in calcium ions, oxidative stress markers, and ion channel immunoreactivity following partial injury to the optic nerve.

PubMed

Wells, Jonathan; Kilburn, Matthew R; Shaw, Jeremy A; Bartlett, Carole A; Harvey, Alan R; Dunlop, Sarah A; Fitzgerald, Melinda

2012-03-01

CNS injury is often localized but can be followed by more widespread secondary degenerative events that usually result in greater functional loss. Using a partial transection model in rat optic nerve (ON). we recently demonstrated in vivo increases in the oxidative stress-associated enzyme MnSOD 5 min after injury. However, mechanisms by which early oxidative stress spreads remain unclear. In the present study, we assessed ion distributions, additional oxidative stress indicators, and ion channel immunoreactivity in ON in the first 24 hr after partial transection. Using nanoscale secondary ion mass spectroscopy (NanoSIMS), we demonstrate changes in the distribution pattern of Ca ions following partial ON transection. Regions of elevated Ca ions in normal ON in vivo rapidly decrease following partial ON transection, but there is an increasingly punctate distribution at 5 min and 24 hr after injury. We also show rapid decreases in catalase activity and later increases in immunoreactivity of the advanced glycation end product carboxymethyl lysine in astrocytes. Increased oxidative stress in astrocytes is accompanied by significantly increased immunoreactivity of the AMPA receptor subunit GluR1 and aquaporin 4 (AQP4). Taken together, the results indicate that Ca ion changes and oxidative stress are early events following partial ON injury that are associated with changes in GluR1 AMPA receptor subunits and altered ionic balance resulting from increased AQP4. Copyright © 2011 Wiley Periodicals, Inc.

Assessing TCE source bioremediation by geostatistical analysis of a flux fence.

PubMed

Cai, Zuansi; Wilson, Ryan D; Lerner, David N

2012-01-01

Mass discharge across transect planes is increasingly used as a metric for performance assessment of in situ groundwater remediation systems. Mass discharge estimates using concentrations measured in multilevel transects are often made by assuming a uniform flow field, and uncertainty contributions from spatial concentration and flow field variability are often overlooked. We extend our recently developed geostatistical approach to estimate mass discharge using transect data of concentration and hydraulic conductivity, so accounting for the spatial variability of both datasets. The magnitude and uncertainty of mass discharge were quantified by conditional simulation. An important benefit of the approach is that uncertainty is quantified as an integral part of the mass discharge estimate. We use this approach for performance assessment of a bioremediation experiment of a trichloroethene (TCE) source zone. Analyses of dissolved parent and daughter compounds demonstrated that the engineered bioremediation has elevated the degradation rate of TCE, resulting in a two-thirds reduction in the TCE mass discharge from the source zone. The biologically enhanced dissolution of TCE was not significant (~5%), and was less than expected. However, the discharges of the daughter products cis-1,2, dichloroethene (cDCE) and vinyl chloride (VC) increased, probably because of the rapid transformation of TCE from the source zone to the measurement transect. This suggests that enhancing the biodegradation of cDCE and VC will be crucial to successful engineered bioremediation of TCE source zones. © 2012, The Author(s). Ground Water © 2012, National Ground Water Association.

LIDAR optical rugosity of coral reefs in Biscayne National Park, Florida

USGS Publications Warehouse

Brock, J.C.; Wright, C.W.; Clayton, T.D.; Nayegandhi, A.

2004-01-01

The NASA Experimental Advanced Airborne Research Lidar (EAARL), a temporal waveform-resolving, airborne, green wavelength LIDAR (light detection and ranging), is designed to measure the submeter-scale topography of shallow reef substrates. Topographic variability is a prime component of habitat complexity, an ecological factor that both expresses and controls the abundance and distribution of many reef organisms. Following the acquisition of EAARL coverage over both mid-platform patch reefs and shelf-margin bank reefs within Biscayne National Park in August 2002, EAARL-based optical indices of topographic variability were evaluated at 15 patch reef and bank reef sites. Several sites were selected to match reefs previously evaluated in situ along underwater video and belt transects. The analysis used large populations of submarine topographic transects derived from the examination of closely spaced laser spot reflections along LIDAR raster scans. At all 15 sites, each LIDAR transect was evaluated separately to determine optical rugosity (Rotran), and the average elevation difference between adjacent points (Av(??E ap)). Further, the whole-site mean and maximum values of Ro tran and Av(??Eap) for the entire population of transects at each analysis site, along with their standard deviations, were calculated. This study revealed that the greater habitat complexity of inshore patch reefs versus outer bank reefs results in relative differences in topographic complexity that can be discerned in the laser returns. Accordingly, LIDAR sensing of optical rugosity is proposed as a complementary new technique for the rapid assessment of shallow coral reefs. ?? Springer-Verlag 2004.

Links between viruses and prokaryotes throughout the water column along a North Atlantic latitudinal transect

PubMed Central

De Corte, Daniele; Sintes, Eva; Yokokawa, Taichi; Reinthaler, Thomas; Herndl, Gerhard J

2012-01-01

Viruses are an abundant, diverse and dynamic component of marine ecosystems and have a key role in the biogeochemical processes of the ocean by controlling prokaryotic and phytoplankton abundance and diversity. However, most of the studies on virus–prokaryote interactions in marine environments have been performed in nearshore waters. To assess potential variations in the relation between viruses and prokaryotes in different oceanographic provinces, we determined viral and prokaryotic abundance and production throughout the water column along a latitudinal transect in the North Atlantic. Depth-related trends in prokaryotic and viral abundance (both decreasing by one order of magnitude from epi- to abyssopelagic waters), and prokaryotic production (decreasing by three orders of magnitude) were observed along the latitudinal transect. The virus-to-prokaryote ratio (VPR) increased from ∼19 in epipelagic to ∼53 in the bathy- and abyssopelagic waters. Although the lytic viral production decreased significantly with depth, the lysogenic viral production did not vary with depth. In bathypelagic waters, pronounced differences in prokaryotic and viral abundance were found among different oceanic provinces with lower leucine incorporation rates and higher VPRs in the North Atlantic Gyre province than in the provinces further north and south. The percentage of lysogeny increased from subpolar regions toward the more oligotrophic lower latitudes. Based on the observed trends over this latitudinal transect, we conclude that the viral–host interactions significantly change among different oceanic provinces in response to changes in the biotic and abiotic variables. PMID:22258100

Respiratory reflexes in response to nasal administration of halothane to anesthetized, spontaneously breathing dogs.

PubMed

Mutoh, T; Kanamaru, A; Tsubone, H; Nishimura, R; Sasaki, N

2000-03-01

To characterize and determine the sensory innervation of respiratory reflexes elicited by nasal administration of halothane to dogs. 10 healthy Beagles. Dogs underwent permanent tracheostomy and, 2 to 3 weeks later, were anesthetized with thiopental and alpha-chloralose administered IV. The nasal passages were functionally isolated so that halothane could be administered to the nasal passages while dogs were breathing 100% O2 via the tracheostomy. Respiratory reflexes in response to administration of halothane at concentrations of 1.25, 1.75, and 2.5 times the minimum alveolar concentration (MAC), and 5% (administered in 100% O2 at a flow rate of 5 L/min) were recorded. Reflexes in response to administration of 5% halothane were also recorded following transection of the infraorbital nerve, transection of the caudal nasal nerve, and nasal administration of lidocaine. Nasal administration of halothane induced an inhibition of breathing characterized by a dose-dependent increase in expiratory time and a resultant decrease in expired volume per unit time. Effects were noticeable immediately after the onset of halothane administration and lasted until its cessation. Reflex responses to halothane administration were attenuated by transection of the caudal nasal nerve and by nasal administration of lidocaine, but transection of the infraorbital nerve had no effect. Nasal administration of halothane at concentrations generally used for mask induction of anesthesia induces reflex inhibition of breathing. Afferent fibers in the caudal nasal nerve appear to play an important role in the reflex inhibition of breathing induced by halothane administration.

Estimation of alewife biomass in Lake Michigan, 1967-1978

USGS Publications Warehouse

Hatch, Richard W.; Haack, Paul M.; Brown, Edward H.

1981-01-01

The buildup of salmonid populations in Lake Michigan through annual stockings of hatchery-reared fish may become limited by the quantity of forage fish, mainly alewives Alosa pseudoharengus, available for food. As a part of a continuing examination of salmonid predator-prey relations in Lake Michigan, we traced changes in alewife biomass estimated from bottom-trawl surveys conducted in late October and early November 1967–1978. Weight of adult alewives trawled per 0.5 hectare of bottom (10-minute drag) at 16 depths along eight transects between 1973 and 1977 formed a skewed distribution: 72 of 464 drags caught no alewives; 89 drags caught less than 1 kg; and 2 drags caught more than 100 kg (maximum 159 kg). Analysis of variance in normalized catch per tow indicated highly significant differences between the main effects of years and depths, and highly significant differences in the interactions of years and transects, years and depths, and transects and depths. Five geographic and depth strata, formed by combining parts of transects wherein mean catch rate did not differ significantly, were the basis for calculating annual estimates of adult alewife biomass (with 90% confidence intervals). Estimated biomass of alewives (±90% confidence limits) in Lake Michigan proper (Green Bay and Grand Traverse Bay excluded) rose gradually from 46,000 (±9,000) t in 1967 to 114,000 (±17,000) t in 1973, declined to 45,000 (±8,000) t in 1977, and rose to 77,000 (±19,000) t in 1978.

Evaluating interception of larval pallid sturgeon on the Lower Missouri River- data acquisition, interpolation, and visualization

NASA Astrophysics Data System (ADS)

Bulliner, E. A., IV; Erwin, S. O.; Anderson, B. J.; Wilson, H.; Jacobson, R. B.

2016-12-01

The transition from endogenous to exogenous feeding is an important life-stage transition for many riverine fish larvae. On the Missouri River, U.S., riverine alteration has decreased connectivity between the navigation channel and complex, food-producing and foraging areas on the channel margins, namely shallow side channels and sandbar complexes. A favored hypothesis, the interception hypothesis, for recruitment failure of pallid sturgeon is that drifting larvae are not able to exit the highly engineered navigation channel, and therefore starve. We present work exploring measures of hydraulic connectivity between the navigation channel and channel margins using multiple data-collection protocols with acoustic Doppler current profilers (ADCPs). As ADCP datasets alone often do not have high enough spatial resolution to characterize interception and connectivity sufficiently at the scale of drifting sturgeon larvae, they are often supplemented with physical and empirical models. Using boat-mounted ADCPs, we collected 3-dimensional current velocities with a variety of driving techniques (specifically, regularly spaced transects, reciprocal transects, and irregular patterns) around areas of potential larval interception. We then used toolkits based in Python to interpolate 3-dimensional velocity fields at spatial scales finer than the original measurements, and visualized resultant velocity vectors and flowlines in the software package Paraview. Using these visualizations, we investigated the necessary resolution of field measurements required to model connectivity with channel margin areas on large, highly engineered river ecosystems such as the Missouri River. We anticipate that results from this work will be used to help inform models of larval interception under current conditions. Furthermore, results from this work will be useful in developing monitoring strategies to evaluate the restoration of channel complexity to support ecological functions.

Spatiotemporal Heterogeneity of Dissolved Organic Carbon in Waters and Soils in a Snow-dominated Headwater Catchment: Investigations at Reynolds Creek Critical Zone Observatory, Owyhee County, Idaho

NASA Astrophysics Data System (ADS)

Radke, A. G.; Godsey, S.; Lohse, K. A.; Huber, D. P.; Patton, N. R.; Holbrook, S.

2017-12-01

The non-uniform distribution of precipitation in snowmelt-driven systems—the result of blowing and drifting snow—is a primary driver of spatial heterogeneity in vegetative communities and soil development. Snowdrifts may increase bedrock weathering below them, creating deeper soils and the potential for greater fracture flow. These snowdrift areas are also commonly more productive than the snow-starved, scoured areas where wind has removed snow. Warming-induced changes in the fraction of precipitation falling as snow, and therefore subject to drifting, may significantly affect carbon dynamics on multiple timescales. The focus of this study is to understand the coupled hydrological and carbon dynamics in a heterogeneous, drift-dominated watershed. We seek to determine the paths of soil water and groundwater in a small headwater catchment (Reynolds Mountain East, Reynolds Creek Critical Zone Observatory, Idaho, USA). Additionally, we anticipate quantifying the flux of dissolved organic carbon through these paths, and relate this to zones of greater vegetative productivity. We deduce likely flowpaths through a combination of soil water, groundwater, and precipitation characterization. Along a transect running from a snowdrift to the stream, we measure hydrometric and hydrochemical signatures of flow throughout the snowmelt period and summer. We then use end-member-mixing analysis to interpret flowpaths in light of inferred subsurface structure derived from drilling and electrical resistance tomography transects. Preliminary results from soil moisture sensors suggest that increased bedrock weathering creates pathways by which snowmelt bypasses portions of the soil, further increasing landscape heterogeneity. Further analysis will identify seasonal changes in carbon sourcing for this watershed, but initial indications are that spring streamwater is sourced primarily from soil water, with close associations between soil carbon and DOC.

In situ detection of tree root distribution and biomass by multi-electrode resistivity imaging.

PubMed

Amato, Mariana; Basso, Bruno; Celano, Giuseppe; Bitella, Giovanni; Morelli, Gianfranco; Rossi, Roberta

2008-10-01

Traditional methods for studying tree roots are destructive and labor intensive, but available nondestructive techniques are applicable only to small scale studies or are strongly limited by soil conditions and root size. Soil electrical resistivity measured by geoelectrical methods has the potential to detect belowground plant structures, but quantitative relationships of these measurements with root traits have not been assessed. We tested the ability of two-dimensional (2-D) DC resistivity tomography to detect the spatial variability of roots and to quantify their biomass in a tree stand. A high-resolution resistivity tomogram was generated along a 11.75 m transect under an Alnus glutinosa (L.) Gaertn. stand based on an alpha-Wenner configuration with 48 electrodes spaced 0.25 m apart. Data were processed by a 2-D finite-element inversion algorithm, and corrected for soil temperature. Data acquisition, inversion and imaging were completed in the field within 60 min. Root dry mass per unit soil volume (root mass density, RMD) was measured destructively on soil samples collected to a depth of 1.05 m. Soil sand, silt, clay and organic matter contents, electrical conductivity, water content and pH were measured on a subset of samples. The spatial pattern of soil resistivity closely matched the spatial distribution of RMD. Multiple linear regression showed that only RMD and soil water content were related to soil resistivity along the transect. Regression analysis of RMD against soil resistivity revealed a highly significant logistic relationship (n = 97), which was confirmed on a separate dataset (n = 67), showing that soil resistivity was quantitatively related to belowground tree root biomass. This relationship provides a basis for developing quick nondestructive methods for detecting root distribution and quantifying root biomass, as well as for optimizing sampling strategies for studying root-driven phenomena.

Production of high quality brain-derived neurotrophic factor (BDNF) and tropomyosin receptor kinase B (TrkB) RNA from isolated populations of rat spinal cord motor neurons obtained by Laser Capture Microdissection (LCM).

PubMed

Mehta, Prachi; Premkumar, Brian; Morris, Renée

2016-08-03

The mammalian central nervous system (CNS) is composed of multiple cellular elements, making it challenging to segregate one particular cell type to study their gene expression profile. For instance, as motor neurons represent only 5-10% of the total cell population of the spinal cord, meaningful transcriptional analysis on these neurons is almost impossible to achieve from homogenized spinal cord tissue. A major challenge faced by scientists is to obtain good quality RNA from small amounts of starting material. In this paper, we used Laser Capture Microdissection (LCM) techniques to identify and isolate spinal cord motor neurons. The present analysis revealed that perfusion with paraformaldehyde (PFA) does not alter RNA quality. RNA integrity numbers (RINs) of tissue samples from rubrospinal tract (RST)-transected, intact spinal cord or from whole spinal cord homogenate were all above 8, which indicates intact, high-quality RNA. Levels of mRNA for brain-derived neurotrophic factor (BDNF) or for its tropomyosin receptor kinase B (TrkB) were not affected by rubrospinal tract (RST) transection, a surgical procedure that deprive motor neurons from one of their main supraspinal input. The isolation of pure populations of neurons with LCM techniques allows for robust transcriptional characterization that cannot be achieved with spinal cord homogenates. Such preparations of pure population of motor neurons will provide valuable tools to advance our understanding of the molecular mechanisms underlying spinal cord injury and neuromuscular diseases. In the near future, LCM techniques might be instrumental to the success of gene therapy for these debilitating conditions. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

Joint body- and surface-wave tomography of Yucca Flat, Nevada

NASA Astrophysics Data System (ADS)

Toney, L. D.; Abbott, R. E.; Preston, L. A.

2017-12-01

In 2015, Sandia National Laboratories conducted an active-source seismic survey of Yucca Flat (YF), Nevada, on the Nevada National Security Site. YF hosted over 650 underground nuclear tests (UGTs) between 1957 and 1992. Data from this survey will help characterize the geologic structure and bulk properties of the region, informing models for the next phase of the Source Physics Experiments. The survey source was a 13,000-kg weight drop at 91 locations along a 19-km N-S transect and 56 locations along an 11-km E-W transect. Over 350 three-component 2-Hz geophones were variably spaced at 10, 20, and 100 m along each line; we used a roll-along survey geometry to ensure 10-m receiver spacing within 2 km of the source. We applied the multiple filter technique to the dataset using a comb of 30 narrow bandpass filters with center frequencies ranging from 1 to 50 Hz. After manually windowing out the fundamental Rayleigh-wave arrival, we picked group-velocity dispersion curves for 50,000 source-receiver pairs. We performed a joint inversion of group-velocity dispersion and existing body-wave travel-time picks for the shear- and compressional-wave velocity structure of YF. Our final models reveal significant Vp / Vs anomalies in the vicinities of legacy UGT sites. The velocity structures corroborate existing seismo-stratigraphic models of YF derived from borehole and gravity data. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology and Engineering Solutions of Sandia LLC, a wholly owned subsidiary of Honeywell International Inc. for the U.S. Department of Energy's National Nuclear Security Administration under contract DE-NA0003525.

Seasonal and Spatial Variation of Particulate Cadmium and Phosphorous along Line P in the Northeast Pacific

NASA Astrophysics Data System (ADS)

Bourne, H.; Bishop, J. K. B.; Wood, T.

2016-02-01

Line P is a transect along 50°N in the subarctic North Pacific that stretches from Sanich Inlet out to Ocean Station PAPA (OSP). Between February 1996 and March the following year, size fraction suspended particulate matter was collected (<1 μm, 1-51 μm and >51 μm) using the Multiple Unit Large Volume Filtration System (MULVFS) technique. Over the course of 4 cruises, 17 MULFS casts were taken. Using this large dataset, we examine the seasonal and spatial variability of cadmium content of particles. Throughout this one year time span, the particulate Cd uptake relative to P varied by a factor of two at individual sites during different seasons and by a factor of three at different sites during the same season. Typically, the Cd:P content of phytoplankton increases going from Sanich Inlet out toward station PAPA. While Sanich Inlet is an iron and zinc replete coastal environment, OSP is located in an HNLC region with low dissolved Fe and Zn concentrations. We compared the Cd:P profiles along the Line P transect to that of other divalent metals, specifically Zn, Mn, Co, Ba and Fe. While Fe:P, Mn:P and Co:P are highest in the coastal environment, Cd:P is higher in the open ocean environment. Cd:P peaks in the open ocean station below the mixed layer. We also compare the relationship between oxygen and Cd content in particles. The reason for Cd uptake by marine organisms is still not fully understood; by examining particles in a well-studied region with seasonal, nutrient, environmental and other divalent metal concentrations in particles, we can better understand the causes for variability.

Remote measurement of surface-water velocity using infrared videography and PIV: a proof-of-concept for Alaskan rivers

USGS Publications Warehouse

Kinzel, Paul J.; Legleiter, Carl; Nelson, Jonathan M.; Conaway, Jeffrey S.

2017-01-01

Thermal cameras with high sensitivity to medium and long wavelengths can resolve features at the surface of flowing water arising from turbulent mixing. Images acquired by these cameras can be processed with particle image velocimetry (PIV) to compute surface velocities based on the displacement of thermal features as they advect with the flow. We conducted a series of field measurements to test this methodology for remote sensing of surface velocities in rivers. We positioned an infrared video camera at multiple stations across bridges that spanned five rivers in Alaska. Simultaneous non-contact measurements of surface velocity were collected with a radar gun. In situ velocity profiles were collected with Acoustic Doppler Current Profilers (ADCP). Infrared image time series were collected at a frequency of 10Hz for a one-minute duration at a number of stations spaced across each bridge. Commercial PIV software used a cross-correlation algorithm to calculate pixel displacements between successive frames, which were then scaled to produce surface velocities. A blanking distance below the ADCP prevents a direct measurement of the surface velocity. However, we estimated surface velocity from the ADCP measurements using a program that normalizes each ADCP transect and combines those normalized transects to compute a mean measurement profile. The program can fit a power law to the profile and in so doing provides a velocity index, the ratio between the depth-averaged and surface velocity. For the rivers in this study, the velocity index ranged from 0.82 – 0.92. Average radar and extrapolated ADCP surface velocities were in good agreement with average infrared PIV calculations.

Hedge your bets on Flood Risk: How do Hedgerows modify hillslope and catchment scale hydrological response?

NASA Astrophysics Data System (ADS)

Coates, Victoria; Pattison, Ian

2017-04-01

A dominant feature in the agricultural landscape in the UK are field boundaries. Two thirds of England has been continuously hedged for over a thousand years although most modern hedges were planted during the Enclosures Acts 1720-1840. However, the use of larger agricultural machinery has resulted in the removal of some field boundaries and the subsequent increase in field sizes over the 20th Century. The multiple benefits of hedgerows in ecology have been extensively studied, but the impact of these widespread features on hydrology and flood risk has seen very little attention. Nature-based solutions are increasingly being seen as a complementary approach to hard engineered flood defences. It is hypothesised that hedgerows play a part in this through modifying hillslope hydrological processes, including (a) changing the spatial distribution of precipitation due to sheltering effects; (b) biological loss of water through transpiration; (c) infiltration increased through improved soil structure at the boundaries; and (d) throughflow effected by modified hydraulic gradients. An extensive monitoring programme of a 20m transect through a hedgerow in the Skell Catchment, Northern England occurred from April 2014 to October 2015. The holistic hydrological cycle was monitored, including precipitation and soil moisture at different distances from the hedgerow, leaf wetness interception, stemflow collars, and throughfall gauges, and transpiration losses from the hedgerow. Results indicate that hedgerows modify precipitation volumes at different distances along the transect, but that relationships are complex, probably related to event specific weather conditions such as wind direction and speed and rainfall intensity. Soil moisture levels are significantly (p<0.001) lower along the hedgerow compared to 1, 3 and 10m away from it in all seasons. It has also been shown that hedgerows modify hydrological connectivity at the catchment scale.

Episodic swimming in the larval zebrafish is generated by a spatially distributed spinal network with modular functional organization

PubMed Central

Wiggin, Timothy D.; Anderson, Tatiana M.; Eian, John; Peck, Jack H.

2012-01-01

Despite the diverse methods vertebrates use for locomotion, there is evidence that components of the locomotor central pattern generator (CPG) are conserved across species. When zebrafish begin swimming early in development, they perform short episodes of activity separated by periods of inactivity. Within these episodes, the trunk flexes with side-to-side alternation and the traveling body wave progresses rostrocaudally. To characterize the distribution of the swimming CPG along the rostrocaudal axis, we performed transections of the larval zebrafish spinal cord and induced fictive swimming using N-methyl-d-aspartate (NMDA). In both intact and spinalized larvae, bursting is found throughout the rostrocaudal extent of the spinal cord, and the properties of fictive swimming observed were dependent on the concentration of NMDA. We isolated series of contiguous spinal segments by performing multiple spinal transections on the same larvae. Although series from all regions of the spinal cord have the capacity to produce bursts, the capacity to produce organized episodes of fictive swimming has a rostral bias: in the rostral spinal cord, only 12 contiguous body segments are necessary, whereas 23 contiguous body segments are necessary in the caudal spinal cord. Shorter series of segments were often active but produced either continuous rhythmic bursting or sporadic, nonrhythmic bursting. Both episodic and continuous bursting alternated between the left and right sides of the body and showed rostrocaudal progression, demonstrating the functional dissociation of the circuits responsible for episodic structure and fine burst timing. These findings parallel results in mammalian locomotion, and we propose a hierarchical model of the larval zebrafish swimming CPG. PMID:22572943

Spatial and temporal variability in coccolithophore abundance and production of PIC and POC in the NE subarctic Pacific during El Niño (1998), La Niña (1999) and 2000

NASA Astrophysics Data System (ADS)

Lipsen, M. S.; Crawford, D. W.; Gower, J.; Harrison, P. J.

2007-10-01

Seasonal variations in coccolithophore abundance, chlorophyll, nutrients and production of particulate organic and inorganic carbon (POC and PIC) were determined along a coastal to oceanic east-west transect (Line P) culminating at Ocean Station Papa in the northeastern subarctic Pacific between 1998 and 2000. Offshore stations generally exhibited low seasonality in chlorophyll concentrations, with moderate seasonality in POC production. Near shelf stations showed a similar pattern to offshore stations, but were also characterized by sporadic events of higher POC productivity. During the 1998 El Niño, June was characterized by low chlorophyll and POC productivity along the transect, presumably as a result of depleted surface nitrate. In contrast, during the 1999 La Niña, and in 2000, higher POC productivity and surface nitrate occurred along the transect in June. Chlorophyll and POC productivity were similar in late summer in all 3 years. The coccolithophore population was usually numerically dominated by Emiliania huxleyi, particularly in June. Along the transect, abundance of coccolithophores was much higher in June during the 1998 El Niño (mean of 221 cells ml -1) than in the 1999 La Niña (mean of 40 cells ml -1), with their abundance in late summers of both years being very low. Abundances were even higher along the transect in June and the late summer of 2000 with sporadic ‘blooms’ of >1000 cells ml -1 at some stations (cruise averages 395 and 552 cell ml -1, respectively). Production rates of PIC did not consistently correlate with areas of high coccolithophore abundance. PIC production was high (100-250 mg C m -2 d -1) along the transect during June 1998, and low (1-40 mg C m -2 d -1) during both winters, June 1999 and during late summers of 1998 and 1999. The year 2000 was more complicated, with high rates of PIC production accompanying high abundance of coccolithophores in late summer, but lower rates of PIC production accompanying high coccolithophore numbers in June. Our data suggest that the abundance of coccolithophores and the production rates of PIC in the subarctic are higher than previously thought. Occasional PIC:POC production ratios of 1 or greater in 1998 and 2000 suggest that coccolithophores in this region could have a significant impact on the efficiency of the biological carbon pump.

Multiple perpetrator rape among girls evaluated at a hospital-based Child Advocacy Center: Seven years of reviewed cases

PubMed Central

Edinburgh, Laurel; Pape-Blabolil, Julie; Harpin, Scott B.; Saewyc, Elizabeth

2015-01-01

The aim of this study was to describe contextual events, abuse experiences, and disclosure processes of adolescents who presented to a hospital-based Child Advocacy Center for medical evaluation and evidentiary collection as indicated after experiencing multiple perpetrator rape during a single event (n = 32) and to compare these findings to a group of single perpetrator sexual assaults (n = 534). This study used a retrospective mixed-methods design with in-depth, forensic interviews and complete physical examinations of gang-raped adolescents. Patients ranged from 12 to 17 years (M = 14 years). Girls who experienced multiple perpetrator rape during a single event were more likely to have run away, to have drunk alcohol in the past month, and to have participated in binge drinking in the past 2 weeks. Acute presentation of these victims were rare but 30% had hymenal transections and 38% had sexually transmitted infections (STIs). Forensic interviews revealed alcohol was a common weapon used by offenders, and its use resulted in victims experiencing difficulty in remembering and reporting details for police investigation or physical and mental health care. Most victims were raped at parties they attended with people they thought they could trust, and they felt let down by witnesses who could have helped but did not intervene. Although relatively rare, multiple perpetrator rape during a single event is a type of severe sexual assault experience and has significant risks for deleterious health outcomes. These victims require health care by trained providers to diagnose physical findings, treat STIs, screen for trauma, and support victims. PMID:24933707

Long-term effect of sphincteric fatigue during bladder neurostimulation.

PubMed

Li, J S; Hassouna, M; Sawan, M; Duval, F; Elhilali, M M

1995-01-01

Commercially available stimulators lack several features, including multiple channel capability and flexible stimulation parameters. These factors limit clinical application. A new computerized electrical stimulator system was developed by our team and evaluated for its efficacy in bladder evacuation in an animal model after spinal cord transection. The system can generate a wide range of stimulation characteristics and has the feature of being a programmable multichannel pacemaker. It has enabled us to induce a reversible fatigue to the external sphincter that results in proper bladder emptying on stimulation. Using this new bladder pacemaker, 8 dogs were studied. We applied the concept of fatiguing of the external sphincter via the pudendal nerve to avoid rhizotomy. We determined the optimal stimulation parameters that can reliably empty the dog's bladder for the duration of the experiment, which lasted for 8 months. The new computerized electrical stimulation system achieved the objective of reducing bladder outlet resistance without the need for sacral rhizotomy.

Blunt transection of rectus abdominis following seatbelt related trauma with associated small and large bowel injury.

PubMed

Patel, K; Doolin, R; Suggett, N

2013-01-01

Closed rupture of rectus abdominis following seatbelt related trauma is rare. We present the case of a 45 year old female who presented with closed rupture of the rectus abdominis in conjunction with damage to small bowel mesentery and infarction of small and large bowel following a high velocity road traffic accident. Multiple intestinal resections were required resulting in short bowel syndrome and abdominal wall reconstruction with a porcine collagen mesh. Post-operative complications included intra-abdominal sepsis and an enterocutaneous fistula. The presence of rupture of rectus abdominis muscle secondary to seatbelt injury should raise the suspicion of intra-abdominal injury. Our case highlights the need for suspicion, investigation and subsequent surgical management of intra-abdominal injury following identification of this rare consequence of seatbelt trauma. Copyright © 2013 The Authors. Published by Elsevier Ltd.. All rights reserved.

Water soluble cations and the fluvial history of Mars

NASA Technical Reports Server (NTRS)

Silverman, M. P.; Munoz, E. F.

1975-01-01

The electrical conductivity and water soluble Na, K, Ca, and Mg of aqueous solutions of terrestrial soils and finely divided igneous and metamorphic rocks were determined. Soils from dry terrestrial basins with a history of water accumulation as well as soils from the topographic lows of valleys accumulated water soluble cations, particularly Na and Ca. These soils as a group can be distinguished from the rocks or a second group of soils (leached upland soils and soils from sites other than the topographic lows of valleys) by significant differences in their mean electrical conductivity and water-soluble Na + Ca content. Similar measurements on multiple samples from the surface of Mars, collected by an automated long-range roving vehicle along a highlands-to-basin transect at sites with morphological features resembling dry riverlike channels, are suggested to determine the fluvial history of the planet.