Microbial Biomarkers for Native and Agricultural Soil Inputs to Atmospheric Particulate Matter

NASA Astrophysics Data System (ADS)

Fulton, J. M.; Herckes, P.; Fraser, M. P.; Collins, J.; Van Mooy, B. A.

2017-12-01

Intense dust storms (haboobs) erode desert soils and cause dramatic short-term increases in particulate matter (PM) concentration in the atmosphere. Background atmospheric PM levels in the southwestern United States also commonly exceed the National Ambient Air Quality Standards, so episodic haboobs and normal weather patterns both contribute to aeolian transport. We analyzed fine (PM2.5) and coarse (PM>2.5) dust fractions sampled in Tempe, Arizona for molecular biomarkers indicative of dust sourced from either native or agricultural soils. We focused on pigments and intact polar lipids (IPLs) that were also in soil crusts collected in the region. The PM samples were taken during two weeks (23 July to 5 August 2014) that included two haboobs during the first week and mostly calm weather with minor rainfall during the second week. We detected scytonemin, a diagnostic pigment biomarker for cyanobacteria, in all PM>2.5 samples, but its concentration was highest in haboob dust. Similarly, scytonemin was only abundant in PM2.5 samples taken during haboobs. Scytonemin is an important component of native biological soil crusts, protecting the crust community from UV radiation, and is ca. two orders of magnitude less abundant in disturbed agricultural soils. In biological soil crusts, scytonemin is associated with extracellular polysaccharides that are produced by cyanobacteria and bind soil into cohesive crusts. The association between scytonemin and haboobs suggests that native soil erosion is facilitated by high energy, episodic events that overcome crust cohesion. IPLs were abundant in agricultural soil crusts and included phosphatidylethanolamine from soil bacteria and a glucosylceramide from fungi. These compounds had similar concentration in haboob and background dust, suggesting agricultural or otherwise disturbed soils contribute more to ambient dust. In this study, we employed a new high resolution mass spectrometric method that produces molecular formulas and structural information, even at very low abundance. Employing this analysis on atmospheric PM improves our understanding of mechanisms by which soil crust biomarkers are transferred to lake and ocean sediments and can also contribute to source apportionment models for describing atmospheric dust contamination.

Environmental Assessment. Beddown of a C-5M Super Galaxy Formal Training Unit, Dover Air Force Base

DTIC Science & Technology

2011-03-01

Korea, Malaysia, Pakistan, or the Philippine Islands; and • Native Hawaiian and Other Pacific Islanders – A person having origins in any of the... Native Hawaiian and Other Pacific Islander alone or in combination 0 0 0 0 Some other race alone or in combination 2.0 1.3 1.6 1.0 Hispanic or...aquatic habitat is not present at the Dover Air Force Base. Federally Listed Fish. Marine Mammals and Sea Turtles : None of these species occur at the

Biomorphous porous hydroxyapatite-ceramics from rattan (Calamus Rotang).

PubMed

Eichenseer, Christiane; Will, Julia; Rampf, Markus; Wend, Süsen; Greil, Peter

2010-01-01

The three-dimensional, highly oriented pore channel anatomy of native rattan (Calamus rotang) was used as a template to fabricate biomorphous hydroxyapatite (Ca(5)(PO(4))(3)OH) ceramics designed for bone regeneration scaffolds. A low viscous hydroxyapatite-sol was prepared from triethyl phosphite and calcium nitrate tetrahydrate and repeatedly vacuum infiltrated into the native template. The template was subsequently pyrolysed at 800 degrees C to form a biocarbon replica of the native tissue. Heat treatment at 1,300 degrees C in air atmosphere caused oxidation of the carbon skeleton and sintering of the hydroxyapatite. SEM analysis confirmed detailed replication of rattan anatomy. Porosity of the samples measured by mercury porosimetry showed a multimodal pore size distribution in the range of 300 nm to 300 microm. Phase composition was determined by XRD and FT-IR revealing hydroxyapatite as the dominant phase with minimum fractions of CaO and Ca(3)(PO(4))(2). The biomorphous scaffolds with a total porosity of 70-80% obtained a compressive strength of 3-5 MPa in axial direction and 1-2 MPa in radial direction of the pore channel orientation. Bending strength was determined in a coaxial double ring test resulting in a maximum bending strength of approximately 2 MPa.

Fermentation and microbial population dynamics during the ensiling of native grass and subsequent exposure to air.

PubMed

Zhang, Qing; Wu, Baiyila; Nishino, Naoki; Wang, Xianguo; Yu, Zhu

2016-03-01

To study the microbial population and fermentation dynamics of large needlegrass (LN) and Chinese leymus (CL) during ensiling and subsequent exposure to air, silages were sampled and analyzed using culture-based techniques and denaturing gradient gel electrophoresis (DGGE). A total of 112 lactic acid bacteria (LAB) strains were isolated and identified using the 16S rRNA sequencing method. Lactic acid was not detected in the first 20 days in LN silage and the pH decreased to 6.13 after 45 days of ensiling. The temperature of the LN silage increased after approximately 30 h of air exposure and the CL silage showed a slight temperature variation. Enterococcus spp. were mainly present in LN silage. The proportion of Lactobacillus brevis in CL silage increased after exposure to air. LN silage with a higher proportion of Enterococcus spp. and propionic acid concentration did not show higher fermentation quality or aerobic stability than CL silage, which had a higher concentration of acetic acid, butyric acid and increased proportion of L. brevis after exposure to air. © 2015 Japanese Society of Animal Science.

77 FR 27835 - Membership Availability in the National Parks Overflights Advisory Group Aviation Rulemaking...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-05-11

... commercial air tour operations over and near national parks. This notice informs the public of six vacancies... Committee (ARC)] for members representing general aviation (one vacancy), commercial air tour operators (two..., commercial air tour operations, environmental concerns, and Native American tribes. The Administrator of the...

National Tribal Air Association Operations Grant - Closed Announcement FY 2013

EPA Pesticide Factsheets

EPA cooperative agreement to strengthen tribal air programs in order to enhance communication and coordination on policy and regulatory activities between federally recognized tribes, EPA, and Indian tribes and Alaska Native Villages.

Molecular detection of native and invasive marine invertebrate larvae present in ballast and open water environmental samples collected in Puget Sound

USGS Publications Warehouse

Harvey, J.B.J.; Hoy, M.S.; Rodriguez, R.J.

2009-01-01

Non-native marine species have been and continue to be introduced into Puget Sound via several vectors including ship's ballast water. Some non-native species become invasive and negatively impact native species or near shore habitats. We present a new methodology for the development and testing of taxon specific PCR primers designed to assess environmental samples of ocean water for the presence of native and non-native bivalves, crustaceans and algae. The intergenic spacer regions (IGS; ITS1, ITS2 and 5.8S) of the ribosomal DNA were sequenced for adult samples of each taxon studied. We used these data along with those available in Genbank to design taxon and group specific primers and tested their stringency against artificial populations of plasmid constructs containing the entire IGS region for each of the 25 taxa in our study, respectively. Taxon and group specific primer sets were then used to detect the presence or absence of native and non-native planktonic life-history stages (propagules) from environmental samples of ballast water and plankton tow net samples collected in Puget Sound. This methodology provides an inexpensive and efficient way to test the discriminatory ability of taxon specific oligonucleotides (PCR primers) before creating molecular probes or beacons for use in molecular ecological applications such as probe hybridizations or microarray analyses. This work addresses the current need to develop molecular tools capable of diagnosing the presence of planktonic life-history stages from non-native marine species (potential invaders) in ballast water and other environmental samples. ?? 2008 Elsevier B.V.

76 FR 65319 - Membership Availability in the National Parks Overflights Advisory Group Aviation Rulemaking...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-10-20

... Tribes ACTION: Notice. SUMMARY: The National Park Service (NPS) and the Federal Aviation Administration... aviation, commercial air tour operations, environmental concerns, and Native American tribes. The... Native American tribes, to contact Mr. Barry Brayer (contact information is written above in FOR FURTHER...

[Mycotrophic capacity and efficiency of microbial consortia of arbuscular mycorrhizal fungi native of soils from Buenos Aires province under contrasting management].

PubMed

Thougnon Islas, Andrea J; Eyherabide, Mercedes; Echeverría, Hernán E; Sainz Rozas, Hernán R; Covacevich, Fernanda

2014-01-01

We characterized the infective and sporulation capacities of microbial consortia of arbuscular mycorrhizal fungi (AMF) native of Buenos Aires province (Argentina) and determined if some soil characteristics and mycorrhizal parameters could allow to select potentially beneficial inocula. Soil samples were selected from seven locations in Buenos Aires province all under agricultural (A) and pristine (P) conditions. The AMF were multiplied and mycorrhizal root colonization of trap plants was observed at 10 weeks of growth. Spore number in field was low; however, after multiplication spore density accounted for 80-1175 spores per 100g of soil. The principal component analysis showed that the P and Fe soil contents are the main modulators of infectivity and sporulation capacity. The mycorrhizal potential was determined in three locations, being high in Pristine Lobería and Agricultural Trenque Lauquen and low in Junín. Agricultural Lobería (AL) and Pristine Lobería (PL) inocula were selected and their efficiency was evaluated under controlled conditions. Even though shoot dry matter increases after inoculation was not significant (p>0.05) mycorrhizal response was greater than 40% for tomato and 25% for corn, particularly after inoculation with inocula from the agricultural management. These results could be associated to the incipient development of mycorrhizae in both species. Additional research should be conducted to further develop our findings in order to determine the factors involved in the selection of efficient inocula. Copyright © 2014 Asociación Colombiana de Psiquiatría. Publicado por Elsevier España. All rights reserved.

Vulnerability to cavitation in Olea europaea current-year shoots: further evidence of an open-vessel artifact associated with centrifuge and air-injection techniques.

PubMed

Torres-Ruiz, José M; Cochard, Hervé; Mayr, Stefan; Beikircher, Barbara; Diaz-Espejo, Antonio; Rodriguez-Dominguez, Celia M; Badel, Eric; Fernández, José Enrique

2014-11-01

Different methods have been devised to analyze vulnerability to cavitation of plants. Although a good agreement between them is usually found, some discrepancies have been reported when measuring samples from long-vesseled species. The aim of this study was to evaluate possible artifacts derived from different methods and sample sizes. Current-year shoot segments of mature olive trees (Olea europaea), a long-vesseled species, were used to generate vulnerability curves (VCs) by bench dehydration, pressure collar and both static- and flow-centrifuge methods. For the latter, two different rotors were used to test possible effects of the rotor design on the curves. Indeed, high-resolution computed tomography (HRCT) images were used to evaluate the functional status of xylem at different water potentials. Measurements of native embolism were used to validate the methods used. The pressure collar and the two centrifugal methods showed greater vulnerability to cavitation than the dehydration method. The shift in vulnerability thresholds in centrifuge methods was more pronounced in shorter samples, supporting the open-vessel artifact hypothesis as a higher proportion of vessels were open in short samples. The two different rotor designs used for the flow-centrifuge method revealed similar vulnerability to cavitation. Only the bench dehydration or HRCT methods produced VCs that agreed with native levels of embolism and water potential values measured in the field. © 2014 Scandinavian Plant Physiology Society.

Factors influencing dental utilization by U.S. military recruits.

PubMed

Chisick, M C; Poindexter, F R; York, A K

1996-12-01

This study identifies factors that influence dental utilization by U.S. military recruits prior to entering military service. Data were collected between February and June 1994 at one recruit in-processing site per service using self-administered questionnaires. A prestratified, systematic, random sample of 2,711 Army, Air Force, Navy, and Marine recruits was drawn. Women and minorities were oversampled. Using logistic regression to determine what factors contribute to the likelihood of recruits having seen a dentist over the past year reveals that the likelihood is greater for females, singles, Air Force personnel, Native Americans, and the better educated; the likelihood is less for recruits who are black, above 19 years old, from the Midwest, Southwest, or Pacific regions of the U.S., and who perceive a need for dental care. Education is the strongest predictor of dental utilization prior to entering military service.

The topomer-sampling model of protein folding

PubMed Central

Debe, Derek A.; Carlson, Matt J.; Goddard, William A.

1999-01-01

Clearly, a protein cannot sample all of its conformations (e.g., ≈3100 ≈ 1048 for a 100 residue protein) on an in vivo folding timescale (<1 s). To investigate how the conformational dynamics of a protein can accommodate subsecond folding time scales, we introduce the concept of the native topomer, which is the set of all structures similar to the native structure (obtainable from the native structure through local backbone coordinate transformations that do not disrupt the covalent bonding of the peptide backbone). We have developed a computational procedure for estimating the number of distinct topomers required to span all conformations (compact and semicompact) for a polypeptide of a given length. For 100 residues, we find ≈3 × 107 distinct topomers. Based on the distance calculated between different topomers, we estimate that a 100-residue polypeptide diffusively samples one topomer every ≈3 ns. Hence, a 100-residue protein can find its native topomer by random sampling in just ≈100 ms. These results suggest that subsecond folding of modest-sized, single-domain proteins can be accomplished by a two-stage process of (i) topomer diffusion: random, diffusive sampling of the 3 × 107 distinct topomers to find the native topomer (≈0.1 s), followed by (ii) intratopomer ordering: nonrandom, local conformational rearrangements within the native topomer to settle into the precise native state. PMID:10077555

Setting limits: Using air pollution thresholds to protect and restore U.S

Treesearch

Mark E Fenn; Kathleen F. Lambert; Tamara F. Blett; Douglas A. Burns; Linda H. Pardo; Gary M. Lovett; Richard A. Haeuber; David C. Evers; Charles T. Driscoll; Dean S. Jeffries

2011-01-01

More than four decades of research provide unequivocal evidence that sulfur, nitrogen, and mercury pollution have altered, and will continue to alter, our nation’s lands and waters. The emission and deposition of air pollutants harm native plants and animals, degrade water quality, affect forest productivity, and are damaging to human health. Many air quality policies...

How reliable are methods to assess xylem vulnerability to cavitation? The issue of 'open vessel' artifact in oaks.

PubMed

Martin-StPaul, N K; Longepierre, D; Huc, R; Delzon, S; Burlett, R; Joffre, R; Rambal, S; Cochard, H

2014-08-01

Three methods are in widespread use to build vulnerability curves (VCs) to cavitation. The bench drying (BD) method is considered as a reference because embolism and xylem pressure are measured on large branches dehydrating in the air, in conditions similar to what happens in nature. Two other methods of embolism induction have been increasingly used. While the Cavitron (CA) uses centrifugal force to induce embolism, in the air injection (AI) method embolism is induced by forcing pressurized air to enter a stem segment. Recent studies have suggested that the AI and CA methods are inappropriate in long-vesselled species because they produce a very high-threshold xylem pressure for embolism (e.g., P50) compared with what is expected from (i) their ecophysiology in the field (native embolism, water potential and stomatal response to xylem pressure) and (ii) the P50 obtained with the BD method. However, other authors have argued that the CA and AI methods may be valid because they produce VCs similar to the BD method. In order to clarify this issue, we assessed VCs with the three above-mentioned methods on the long-vesselled Quercus ilex L. We showed that the BD VC yielded threshold xylem pressure for embolism consistent with in situ measurements of native embolism, minimal water potential and stomatal conductance. We therefore concluded that the BD method provides a reliable estimate of the VC for this species. The CA method produced a very high P50 (i.e., less negative) compared with the BD method, which is consistent with an artifact related to the vessel length. The VCs obtained with the AI method were highly variable, producing P50 ranging from -2 to -8.2 MPa. This wide variability was more related to differences in base diameter among samples than to differences in the length of samples. We concluded that this method is probably subject to an artifact linked to the distribution of vessel lengths within the sample. Overall, our results indicate that the CA and the AI should be used with extreme caution on long-vesselled species. Our results also highlight that several criteria may be helpful to assess the validity of a VC. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

A preliminary survey of Chlamydia psittaci genotypes from native and introduced birds in New Zealand.

PubMed

Gedye, K R; Fremaux, M; Garcia-Ramirez, J C; Gartrell, B D

2018-05-01

To describe the Chlamydia psittaci genotypes in samples from native and introduced birds from New Zealand by analysis of the sequence variation of the ompA gene. DNA was extracted from samples collected from a non-random sample of birds; either swabs from live asymptomatic birds or birds with clinical signs, or formalin-fixed, paraffin-embedded (FFPE) samples from historical post-mortem cases. The presence of C. psittaci in all samples had been confirmed using a quantitative PCR assay. The C. psittaci ompA gene was amplified and sequenced from samples from 26 native and introduced infected birds comprising 12 different species. These sequences were compared to published available C. psittaci genotypes. Genotypes A and C of C. psittaci were identified in the samples. Genotype A was identified in samples from nine birds, including various native and introduced species. Genotype C was identified in samples from 16 different waterfowl species, and a mixed infection of both genotypes was found in a kaka (Nestor meridionalis). In native birds, C. psittaci infection was confirmed in seven new host species. Two genotypes (A and C) of C. psittaci were found in samples from a wider range of both native and introduced species of birds in New Zealand than previously reported. Both genotypes have been globally associated with significant disease in birds and humans. These initial results suggest the host range of C. psittaci in New Zealand birds is under-reported. However, the prevalence of C. psittaci infection in New Zealand, and the associated impact on avian and public health, remains to be determined. There are biosecurity implications associated with the importation of birds to New Zealand if there is a limited diversity of C. psittaci genotypes present.

Rupturing Giant Plasma Membrane Vesicles to Form Micron-sized Supported Cell Plasma Membranes with Native Transmembrane Proteins.

PubMed

Chiang, Po-Chieh; Tanady, Kevin; Huang, Ling-Ting; Chao, Ling

2017-11-09

Being able to directly obtain micron-sized cell blebs, giant plasma membrane vesicles (GPMVs), with native membrane proteins and deposit them on a planar support to form supported plasma membranes could allow the membrane proteins to be studied by various surface analytical tools in native-like bilayer environments. However, GPMVs do not easily rupture on conventional supports because of their high protein and cholesterol contents. Here, we demonstrate the possibility of using compression generated by the air-water interface to efficiently rupture GPMVs to form micron-sized supported membranes with native plasma membrane proteins. We demonstrated that not only lipid but also a native transmembrane protein in HeLa cells, Aquaporin 3 (AQP3), is mobile in the supported membrane platform. This convenient method for generating micron-sized supported membrane patches with mobile native transmembrane proteins could not only facilitate the study of membrane proteins by surface analytical tools, but could also enable us to use native membrane proteins for bio-sensing applications.

Effects of exotic grasses on soil seed banks in Southeastern Arizona grasslands

USGS Publications Warehouse

McLaughlin, S.P.; Bowers, Janice E.

2007-01-01

At the Appleton-Whittell Research Ranch, an ungrazed grassland preserve in southeastern Arizona, soil seed banks were sampled in June, August, and October 2002 and June 2003. Wildfire had previously burned 90% of the research ranch in May 2002. Seed density and species richness in burned native grassland (2 plots) were compared to those in burned exotic grassland (2 plots). Averaged over 4 sample dates, seed densities were as follows: burned native grassland, 591 ?? 243.1 seeds??m-2 and 784 ?? 334.9 seeds??m-2; burned exotic grassland, 501 ?? 198.9 seeds??m-2 and 196 ?? 123.8 seeds??m-2. Species richness in the seed bank, also averaged over 4 sample dates, was as follows: burned native grassland, 16.3 ?? 1.7 species??m -2 and 19.5 ?? 1.0 species??m-2; burned exotic grassland, 12.0 ?? 3.4 species??m-2 and 11.06 ?? 2.5 species??m-2. The seed bank of burned exotic grassland contained significantly fewer seeds and species than that of burned native grassland. In addition, the seed bank in burned exotic grassland comprised mainly exotic grasses, whereas annual and perennial herbs, most of them native, dominated the seed bank of burned native grassland. Of the 50 species detected in soil samples, only 20 had a persistent seed bank, and only 1 of these was a native perennial bunchgrass. The preponderance of transient species means that eradication of exotic grasses must be followed by reseeding of native grasses and herbs, perhaps repeatedly, if native grassland is to replace exotic grassland.

Influence of size-fractioning techniques on concentrations of selected trace metals in bottom materials from two streams in northeastern Ohio

USGS Publications Warehouse

Koltun, G.F.; Helsel, Dennis R.

1986-01-01

Identical stream-bottom material samples, when fractioned to the same size by different techniques, may contain significantly different trace-metal concentrations. Precision of techniques also may differ, which could affect the ability to discriminate between size-fractioned bottom-material samples having different metal concentrations. Bottom-material samples fractioned to less than 0.020 millimeters by means of three common techniques (air elutriation, sieving, and settling) were analyzed for six trace metals to determine whether the technique used to obtain the desired particle-size fraction affects the ability to discriminate between bottom materials having different trace-metal concentrations. In addition, this study attempts to assess whether median trace-metal concentrations in size-fractioned bottom materials of identical origin differ depending on the size-fractioning technique used. Finally, this study evaluates the efficiency of the three size-fractioning techniques in terms of time, expense, and effort involved. Bottom-material samples were collected at two sites in northeastern Ohio: One is located in an undeveloped forested basin, and the other is located in a basin having a mixture of industrial and surface-mining land uses. The sites were selected for their close physical proximity, similar contributing drainage areas, and the likelihood that trace-metal concentrations in the bottom materials would be significantly different. Statistically significant differences in the concentrations of trace metals were detected between bottom-material samples collected at the two sites when the samples had been size-fractioned by means of air elutriation or sieving. Statistical analyses of samples that had been size fractioned by settling in native water were not measurably different in any of the six trace metals analyzed. Results of multiple comparison tests suggest that differences related to size-fractioning technique were evident in median copper, lead, and iron concentrations. Technique-related differences in copper concentrations most likely resulted from contamination of air-elutriated samples by a feed tip on the elutriator apparatus. No technique-related differences were observed in chromium, manganese, or zinc concentrations. Although air elutriation was the most expensive sizefractioning technique investigated, samples fractioned by this technique appeared to provide a superior level of discrimination between metal concentrations present in the bottom materials of the two sites. Sieving was an adequate lower-cost but more laborintensive alternative.

Environmental Assessment for Routine Basewide Military-Sponsored Training Exercises, Edwards Air Force Base, California

DTIC Science & Technology

2007-02-01

control AVAQMD Antelope Valley Air Quality Management District AQMD Air Quality Management Districts BACT Best Available Control Technology BLM Bureau...Aeronautics NAGPRA Native American Graves Protection and Repatriation Act NASA National Aeronautics and Space Administration NBCC nuclear, biological...support of the National Aeronautics and Space Administration ( NASA ) shuttle program is required to be maintained. This includes rescue, medical evaluation

The counting of native blood cells by digital microscopy

NASA Astrophysics Data System (ADS)

Torbin, S. O.; Doubrovski, V. A.; Zabenkov, I. V.; Tsareva, O. E.

2017-03-01

An algorithm for photographic images processing of blood samples in its native state was developed to determine the concentration of erythrocytes, leukocytes and platelets without individual separate preparation of cells' samples. Special "photo templates" were suggested to use in order to identify red blood cells. The effect of "highlighting" of leukocytes, which was found by authors, was used to increase the accuracy of this type of cells counting. Finally to raise the resolution of platelets from leukocytes the areas of their photo images were used, but not their sizes. It is shown that the accuracy of cells counting for native blood samples may be comparable with the accuracy of similar studies for smears. At the same time the proposed native blood analysis simplifies greatly the procedure of sample preparation in comparison to smear, permits to move from the detection of blood cells ratio to the determination of their concentrations in the sample.

77 FR 48201 - Membership in the National Parks Overflights Advisory Group Aviation Rulemaking Committee

Federal Register 2010, 2011, 2012, 2013, 2014

2012-08-13

... commercial air tour operators (2), general aviation (1), Native American tribal (1), and environmental (2.... Vacancies filled include the two commercial tour operator openings, the general aviation opening, the tribal... comprised of a balanced group of representatives of general aviation, commercial air tour operations...

Mitochondrial DNA analysis reveals substantial Native American ancestry in Puerto Rico.

PubMed

Martínez-Cruzado, J C; Toro-Labrador, G; Ho-Fung, V; Estévez-Montero, M A; Lobaina-Manzanet, A; Padovani-Claudio, D A; Sánchez-Cruz, H; Ortiz-Bermúdez, P; Sánchez-Crespo, A

2001-08-01

To estimate the maternal contribution of Native Americans to the human gene pool of Puerto Ricans--a population of mixed African, European, and Amerindian ancestry--the mtDNAs of two sample sets were screened for restriction fragment length polymorphisms (RFLPs) defining the four major Native American haplogroups. The sample set collected from people who claimed to have a maternal ancestor with Native American physiognomic traits had a statistically significant higher frequency of Native American mtDNAs (69.6%) than did the unbiased sample set (52.6%). This higher frequency suggests that, despite the fact that the native Taíno culture has been extinct for centuries, the Taíno contribution to the current population is considerable and some of the Taíno physiognomic traits are still present. Native American haplogroup frequency analysis shows a highly structured distribution, suggesting that the contribution of Native Americans foreign to Puerto Rico is minimal. Haplogroups A and C cover 56.0% and 35.6% of the Native American mtDNAs, respectively. No haplogroup D mtDNAs were found. Most of the linguistic, biological, and cultural evidence suggests that the Ceramic culture of the Taínos originated in or close to the Yanomama territory in the Amazon. However, the absence of haplogroup A in the Yanomami suggests that the Yanomami are not the only Taíno ancestors.

Invasion strategy and abiotic activity triggers for non-native gobiids of the River Rhine

PubMed Central

Hartmann, Frank; Brinker, Alexander

2017-01-01

The 24 hour activity patterns of three non-native gobiids (round goby Neogobius melanostomus, Western tubenose goby Proterorhinus semilunaris and bighead goby Ponticola kessleri) were assessed over 46 consecutive months between 2011 and 2014 from their occurrence in the cooling water intake of a nuclear power plant on the River Rhine, Germany. In total, 117717 gobiids were identified and classified. The occurrence of all three species varied strongly between sampling years, and species-specific activity triggers were identified. The activity of juveniles of all three gobiids species was positively temperature dependent while adult tubenose goby activity appeared to be negatively temperature dependent. Increasing fluvial discharge in the adjoining main river stimulated the activity of juvenile round goby but inhibited activity of adult tubenose goby. Except for adult bighead goby, activity was also structured by time of day, but with no uniform mean. Meteorological factors such as precipitation, air pressure and duration of sunshine hours had little or no influence on gobiid activity. On selected rare occasions, mainly at night, all three species exhibited pulsed swarming behaviour, with thousands of individuals recorded in the intake water. Round goby swarms exhibited both the highest intensity and the largest swarming individuals, suggesting a potential competitive advantage over tubenose and bighead goby. Electric fishing surveys in natural river stretches corroborated this observation. Negative effects on the native fish fauna were apparent only for the bullhead, Cottus gobio. The activity triggers identified offer a unique insight into the invasion mechanisms of these ecosystem-changing non-native gobiids. PMID:28915248

Grassland birds wintering at U.S. Navy facilities in southern Texas

USGS Publications Warehouse

Woodin, Marc C.; Skoruppa, Mary Kay; Bryan, Pearce D.; Ruddy, Amanda J.; Hickman, Graham C.

2010-01-01

Grassland birds have undergone widespread decline throughout North America during the past several decades. Causes of this decline include habitat loss and fragmentation because of conversion of grasslands to cropland, afforestation in the East, brush and shrub invasion in the Southwest and western United States, and planting of exotic grass species to enhance forage production. A large number of exotic plant species, including grasses, have been introduced in North America, but most research on the effects of these invasions on birds has been limited to breeding birds, primarily those in northern latitudes. Research on the effects of exotic grasses on birds in winter has been extremely limited.This is the first study in southern Texas to examine and compare winter bird responses to native and exotic grasslands. This study was conducted during a period of six years (2003–2009) on United States Navy facilities in southern Texas including Naval Air Station–Corpus Christi, Naval Air Station–Kingsville, Naval Auxiliary Landing Field Waldron, Naval Auxiliary Landing Field Orange Grove, and Escondido Ranch, all of which contained examples of native grasslands, exotic grasslands, or both. Data from native and exotic grasslands were collected and compared for bird abundance and diversity; ground cover, vegetation density, and floristic diversity; bird and vegetation relationships; diversity of insects and arachnids; and seed abundance and diversity. Effects of management treatments in exotic grasslands were evaluated by comparing numbers and diversity of birds and small mammals in mowed, burned, and control areas.To determine bird abundance and bird species richness, birds were surveyed monthly (December–February) during the winters of 2003–2008 in transects (100 meter × 20 meter) located in native and exotic grasslands distributed at all five U.S. Navy facilities. To compare vegetation in native and exotic grasslands, vegetation characteristics were measured during 2003–2008 in the same transects used for bird surveys and included five measures of ground cover, plus estimates of plant species richness, vegetation density (visual obstruction) at two different heights, and shrub numbers. These data, plus seasonal rainfall, were then used to evaluate components of variation in native and exotic grasslands. Relations between total bird numbers and bird species richness with environmental variation in native and exotic grasslands were compared. To compare diversity of arthropods in native and exotic grasslands, insects and arachnids were collected using three different methodologies (standardized sweep-net, random sweep-net, and pitfall traps) during four seasons, (2005–2006), at Naval Air Station–Corpus Christi, Naval Auxiliary Landing Field Waldron, and Naval Air Station–Kingsville. To compare seed abundance and diversity between native and exotic grasslands, seeds were collected for two winters (2004–2006) at Naval Air Station–Corpus Christi and Naval Air Station–Kingsville. To evaluate effects of management on grassland vertebrates, abundance and diversity of birds and small mammals were estimated and compared in exotic grasses subjected to mowing, burning, or no active management (control) for one full year (2008–2009).Observations were made of 1,044 birds of 30 species in grassland transects during five winters. The Savannah Sparrow (Passerculus sandwichensis) was the most common bird, which, with 644 detections, accounted for 63 percent of all individuals identified to species. Meadowlarks (Sturnella spp.) and Le Conte’s Sparrows (Ammodramus leconteii) were the second (10 percent) and third (7 percent) most abundant bird species, respectively. Six of the seven most abundant species detected in grasslands were grassland species, and their numbers accounted for 87 percent of all birds, but 20 of the 30 species (67 percent) that used grasslands were not grassland species. Seven species observed in grassland transects during the study were Species of Conservation Concern: Le Conte’s Sparrow, Sedge Wren (Cistothorus platensis), Grasshopper Sparrow (Ammodramus savannarum), Long-billed Curlew (Numenius americanus), Sprague’s Pipit (Anthus spragueii), Cassin’s Sparrow (Aimophila cassinii), and Loggerhead Shrike (Lanius ludovicianus). Native grasslands consistently supported greater bird species richness than exotic grasslands. In one winter, exotic grasslands supported more birds than native grasslands.Native grasslands were determined to have more forb cover, more bare ground, and greater plant species richness than exotic grasslands, whereas exotic grasslands were characterized by more grass cover and relatively greater vegetation density during dry years. Not only did these individual measures differ between native and exotic grasslands, but components of variation also differed. In native grasslands, grass density and cover contributed more to variation, whereas in exotic grasslands, non-grass vegetation was a greater component of variation. Total bird numbers and bird species richness in native grasslands were related to the principal component that contained a measure of litter cover. Total bird numbers and bird species richness in exotic grasslands indicated no significant relationships with any of the principal components of variation.The two most common insect orders in native grasslands were Hymenoptera and Coleoptera, which accounted for 42 percent of all insects. The two most common insect orders in exotic grasslands were Hemiptera and Homoptera, which accounted for about 80 percent of all insects. Insect family richness was greater in exotic grasslands than in native grasslands in two of four seasons. Proportions of arachnid families were similar in native and exotic grasslands, but arachnid family richness was greater in exotic grasslands than in native grasslands.Abundance of seeds was greater in exotic than in native grasslands. However, seed diversity was greater in native grasslands than in exotic grasslands.Among the three types of management (mowed, burned, and control) applied to exotic grasses, birds were most abundant in the mowed area. Sedge Wrens, however, were never encountered in mowed sites. Meadowlarks were similarly abundant in all treatments, but Le Conte’s Sparrows were detected only in the control (unmanaged) area. Hispid cotton rats (Sigmodon hispidus) accounted for 93 percent of all rodent captures, with the number of captures peaking December through February. Hispid cotton rat numbers and total rodent numbers were greatest in control and pre-burn areas, and lowest in the mowed area. Mammal diversity, however, was greatest in the mowed habitat.Native and exotic grasslands differed essentially in all categories (bird numbers and diversity, vegetation characteristics, components of variation, diversity of insects and arachnids, and seed abundance and diversity) used to measure and compare them. This indicates that fundamental ecosystem processes have been altered after native grasslands have undergone invasion and ultimate domination by exotic grass species. Future research in Texas grassland ecosystems is essential because: 1) Texas sustains more area in grasslands than any other state or province in the Central Flyway; 2) Texas serves as the winter destination or migration pathway for hundreds of species of birds, including winter residents and Neotropical migrants; 3) ecology, distribution, and numbers of grassland birds wintering in southern latitudes of the United States remains poorly understood; and 4) climate change threatens to further accelerate advances of invading grass species.

Civil Engineer Contingency Training Moody Air Force Base, Georgia Environmental Assessment

DTIC Science & Technology

2007-03-01

archaeological remains, historic sites, or Native American religious concerns. 3.2 Cultural Resources Cultural resources consist of prehistoric and...resources, and American Indian sacred sites and traditional cultural properties. Historic properties are defined by 36 CFR 60.4 as significant...must be complied with even when an environmental document is not required. The Native American Graves and Repatriation Act (NAGPRA) of 1990 protects

PBF Reactor Building (PER620). Construction view shows native lava rock ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

PBF Reactor Building (PER-620). Construction view shows native lava rock surrounding basement excavation and general complexity of planning required to build the PBF. A three-inch low-pressure air line protrudes from wall just below left center. Date: February 21, 1967. Photographer: Larry Page. INEEL negative no. 67-1125 - Idaho National Engineering Laboratory, SPERT-I & Power Burst Facility Area, Scoville, Butte County, ID

Direct correlation and strong reduction of native point defects and microwave dielectric loss in air-annealed (Ba,Sr)TiO{sub 3}

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zeng, Z. Q.; Podpirka, A.; Kirchoefer, S. W.

2015-05-04

We report on the native defect and microwave properties of 1 μm thick Ba{sub 0.50}Sr{sub 0.50}TiO{sub 3} (BST) films grown on MgO (100) substrates by molecular beam epitaxy (MBE). Depth-resolved cathodoluminescence spectroscopy (DRCLS) showed high densities of native point defects in as-deposited BST films, causing strong subgap emission between 2.0 eV and 3.0 eV due to mixed cation V{sub C} and oxygen Vo vacancies. Post growth air anneals reduce these defects with 2.2, 2.65, and 3.0 eV V{sub O} and 2.4 eV V{sub C} intensities decreasing with increasing anneal temperature and by nearly two orders of magnitude after 950 °C annealing. These low-defect annealed BSTmore » films exhibited high quality microwave properties, including room temperature interdigitated capacitor tunability of 13% under an electric bias of 40 V and tan δ of 0.002 at 10 GHz and 40 V bias. The results provide a feasible route to grow high quality BST films by MBE through post-air annealing guided by DRCLS.« less

Feasibility of a Networked Air Traffic Infrastructure Validation Environment for Advanced NextGen Concepts

NASA Technical Reports Server (NTRS)

McCormack, Michael J.; Gibson, Alec K.; Dennis, Noah E.; Underwood, Matthew C.; Miller,Lana B.; Ballin, Mark G.

2013-01-01

Abstract-Next Generation Air Transportation System (NextGen) applications reliant upon aircraft data links such as Automatic Dependent Surveillance-Broadcast (ADS-B) offer a sweeping modernization of the National Airspace System (NAS), but the aviation stakeholder community has not yet established a positive business case for equipage and message content standards remain in flux. It is necessary to transition promising Air Traffic Management (ATM) Concepts of Operations (ConOps) from simulation environments to full-scale flight tests in order to validate user benefits and solidify message standards. However, flight tests are prohibitively expensive and message standards for Commercial-off-the-Shelf (COTS) systems cannot support many advanced ConOps. It is therefore proposed to simulate future aircraft surveillance and communications equipage and employ an existing commercial data link to exchange data during dedicated flight tests. This capability, referred to as the Networked Air Traffic Infrastructure Validation Environment (NATIVE), would emulate aircraft data links such as ADS-B using in-flight Internet and easily-installed test equipment. By utilizing low-cost equipment that is easy to install and certify for testing, advanced ATM ConOps can be validated, message content standards can be solidified, and new standards can be established through full-scale flight trials without necessary or expensive equipage or extensive flight test preparation. This paper presents results of a feasibility study of the NATIVE concept. To determine requirements, six NATIVE design configurations were developed for two NASA ConOps that rely on ADS-B. The performance characteristics of three existing in-flight Internet services were investigated to determine whether performance is adequate to support the concept. Next, a study of requisite hardware and software was conducted to examine whether and how the NATIVE concept might be realized. Finally, to determine a business case, economic factors were evaluated and a preliminary cost-benefit analysis was performed.

Measurement Invariance of the Digital Natives Assessment Scale across Gender in a Sample of Turkish University Students

ERIC Educational Resources Information Center

Ursavas, Ömer Faruk; Kabakçi Yurdakul, Isil; Türk, Mesut; Mcilroy, David

2016-01-01

With reference to the digital natives' debate, there is a gap on digital natives' characteristics. To fill this gap, the Digital Natives Assessment Scale was developed to measure students' assessment of the degree to which they perceived themselves to possess the attributes of digital natives. The scale was developed within the Turkish language…

Interplay of secondary structures and side-chain contacts in the denatured state of BBA1

NASA Astrophysics Data System (ADS)

Wen, Edward Z.; Luo, Ray

2004-08-01

The denatured state of a miniprotein BBA1 is studied under the native condition with the AMBER/Poisson-Boltzmann energy model and with the self-guided enhanced sampling technique. Forty independent trajectories are collected to sample the highly diversified denatured structures. Our simulation data show that the denatured BBA1 contains high percentage of native helix and native turn, but low percentage of native hairpin. Conditional population analysis indicates that the native helix formation and the native hairpin formation are not cooperative in the denatured state. Side-chain analysis shows that the native hydrophobic contacts are more preferred than the non-native hydrophobic contacts in the denatured BBA1. In contrast, the salt-bridge contacts are more or less nonspecific even if their populations are higher than those of hydrophobic contacts. Analysis of the trajectories shows that the native helix mostly initiates near the N terminus and propagates to the C terminus, and mostly forms from 310-helix/turn to α helix. The same analysis shows that the native turn is important but not necessary in its formation in the denatured BBA1. In addition, the formations of the two strands in the native hairpin are rather asymmetric, demonstrating the likely influence of the protein environment. Energetic analysis shows that the native helix formation is largely driven by electrostatic interactions in denatured BBA1. Further, the native helix formation is associated with the breakup of non-native salt-bridge contacts and the accumulation of native salt-bridge contacts. However, the native hydrophobic contacts only show a small increase upon the native helix formation while the non-native hydrophobic contacts stay essentially the same, different from the evolution of hydrophobic contacts observed in an isolated helix folding.

Infrared (2.08-14 micron) spectra of powered stony meteorites

NASA Technical Reports Server (NTRS)

Salisbury, J. W.; Daria, D. M.; Jarosewich, E.

1991-01-01

Infrared biconical reflectance spectra of 60 powdered meteorite samples, representing 50 different stony meteorites, were measured as analogues of asteroidal regolith. Representative samples were measured in directional hemispherical reflectance to assure that Kirchhoff's Law can be used to predict relative emissivity from the reflectance spectra. These spectral data confirm that the O-H fundamental absorption band near 2.9 microns is an extremely sensitive indicator of incipient alteration, which often has taken place in powdered meteorite samples exposed only to water vapor in the air. Such non-carbonaceous samples typically contain less than 1 percent water by weight. Likewise, the C-H fundamental absorption bands near 3.4 and 3.5 microns are equally sensitive indicators of contamination with volatile hydrocarbons, which can also be absorbed from the air. The heavy, macromolecular hydrocarbons native to chondrites do not display such heavy bands, making detection of these bands in remote sensing of asteroids unlikely. Despite the spectral artifacts introduced by alteration and hydrocarbon contamination, powdered stony meteorites display a wide variety of real spectral features that can be used for their identification, including residual reststrahlen bands, absorption bands, and the Christiansen feature. Researchers found that the wavelengths of the peaks or troughs of each of these spectral features can be used independently to infer meteorite composition, but the best results are obtained when the entire spectral curve is used, or at least the portion of it encompassed by the 8 to 14 micron atmospheric window, in a digital search library.

Self-Control, Native Traditionalism, and Native American Substance Use: Testing the Cultural Invariance of a General Theory of Crime

ERIC Educational Resources Information Center

Morris, Gregory D.; Wood, Peter B.; Dunaway, R. Gregory

2006-01-01

Using a sample of White and Native American high school students, the authors provide a test of (a) self-control theory's invariance thesis and (b) native traditionalism as an explanation of Native American substance use. Self-control significantly influenced all forms of substance use when controlling for race and in race-specific analyses.…

Field-scale demonstration of induced biogeochemical reductive dechlorination at Dover Air Force Base, Dover, Delaware

NASA Astrophysics Data System (ADS)

Kennedy, Lonnie G.; Everett, Jess W.; Becvar, Erica; DeFeo, Donald

2006-11-01

Biogeochemical reductive dechlorination (BiRD) is a new remediation approach for chlorinated aliphatic hydrocarbons (CAHs). The approach stimulates common sulfate-reducing soil bacteria, facilitating the geochemical conversion of native iron minerals into iron sulfides. Iron sulfides have the ability to chemically reduce many common CAH compounds including PCE, TCE, DCE, similar to zero valent iron (Fe 0). Results of a field test at Dover Air Force Base, Dover, Delaware, are given in this paper. BiRD was stimulated by direct injection of Epson salt (MgSO 4·7H 2O) and sodium (L) lactate (NaC 3H 5O 3) in five injection wells. Sediment was sampled before and 8 months after injection. Significant iron sulfide minerals developed in the sandy aquifer matrix. From ground water analyses, treatment began a few weeks after injection with up to 95% reduction in PCE, TCE, and cDCE in less than 1 year. More complete CAH treatment is likely at a larger scale than this demonstration.

Large-Scale Land Development, Fugitive Dust, and Increased Coccidioidomycosis Incidence in the Antelope Valley of California, 1999-2014.

PubMed

Colson, Aaron J; Vredenburgh, Larry; Guevara, Ramon E; Rangel, Natalia P; Kloock, Carl T; Lauer, Antje

2017-06-01

Ongoing large-scale land development for renewable energy projects in the Antelope Valley, located in the Western Mojave Desert, has been blamed for increased fugitive dust emissions and coccidioidomycosis incidence among the general public in recent years. Soil samples were collected at six sites that were destined for solar farm construction and were analyzed for the presence of the soil-borne fungal pathogen Coccidioides immitis which is endemic to many areas of central and southern California. We used a modified culture-independent nested PCR approach to identify the pathogen in all soil samples and also compared the sampling sites in regard to soil physical and chemical parameters, degree of disturbance, and vegetation. Our results indicated the presence of C. immitis at four of the six sites, predominantly in non-disturbed soils of the Pond-Oban complex, which are characterized by an elevated pH and salt bush communities, but also in grassland characterized by different soil parameters and covered with native and non-native annuals. Overall, we were able to detect the pathogen in 40% of the soil samples (n = 42). Incidence of coccidioidomycosis in the Antelope Valley was positively correlated with land use and particulate matter in the air (PM10) (Pearson correlation coefficient >0.5). With the predicted population growth and ongoing large-scale disturbance of soil in the Antelope Valley in coming years, incidence of coccidioidomycosis will likely further increase if policy makers and land developers continue to ignore the risk of grading land without implementing long-term dust mitigation plans in Environmental Impact Reports.

Environmental Impact Statement. Disposal and Reuse of Williams Air Force Base, Arizona.

DTIC Science & Technology

1994-06-01

none native 4. Mulberry (Moraceae op.) 5. Pine (Pinaceae up.) 6. Desert Willow (Chilopsis linearis) 7. Red Bird of Paradise (Caesalpinia pulcherrima...Cecil P. A atomne Director Laud Un Phaulfi XC Governor Thoymma 1. Whiet Lt- GOOvenr Mary T. Thomas pas DEpAWTMENT OF THE AIR FORCE wwOOS Am FORM OA5 TWax

Preliminary Assessment Springfield Air National Guard Base, Ohio Air National Guard, Springfield-Beckley Municipal Airport, Springfield, Ohio and Blue Ash Air National Guard Station, Ohio Air National Guard, Cincinnati, Ohio

DTIC Science & Technology

1988-12-01

called soapstone . The third member of the Niagaran Series, the Laurel Dolomite, is thinly bedded, bluish-gray in color, and approximately 5 to 9 feet...slopes of hills. This m formation has a total thickness of 250 feet, and includes beds of limestone, soft shale, clay, or soapstone . The shales...INTERBEDDED. IRON [mineral] - A heavy, magnetic , malleable and ductile, and chemically active mineral, the native metallic element Fe. JP-4 - A type

Imaging of Norway spruce early somatic embryos with the ESEM, Cryo-SEM and laser scanning microscope.

PubMed

Neděla, Vilém; Hřib, Jiří; Havel, Ladislav; Hudec, Jiří; Runštuk, Jiří

2016-05-01

This article describes the surface structure of Norway spruce early somatic embryos (ESEs) as a typical culture with asynchronous development. The microstructure of extracellular matrix covering ESEs were observed using the environmental scanning electron microscope as a primary tool and using the scanning electron microscope with cryo attachment and laser electron microscope as a complementary tool allowing our results to be proven independently. The fresh samples were observed in conditions of the air environment of the environmental scanning electron microscope (ESEM) with the pressure from 550Pa to 690Pa and the low temperature of the sample from -18°C to -22°C. The samples were studied using two different types of detector to allow studying either the thin surface structure or material composition. The scanning electron microscope with cryo attachment was used for imaging frozen extracellular matrix microstructure with higher resolution. The combination of both electron microscopy methods was suitable for observation of "native" plant samples, allowing correct evaluation of our results, free of error and artifacts. Copyright © 2016 Elsevier Ltd. All rights reserved.

Random versus fixed-site sampling when monitoring relative abundance of fishes in headwater streams of the upper Colorado River basin

USGS Publications Warehouse

Quist, M.C.; Gerow, K.G.; Bower, M.R.; Hubert, W.A.

2006-01-01

Native fishes of the upper Colorado River basin (UCRB) have declined in distribution and abundance due to habitat degradation and interactions with normative fishes. Consequently, monitoring populations of both native and nonnative fishes is important for conservation of native species. We used data collected from Muddy Creek, Wyoming (2003-2004), to compare sample size estimates using a random and a fixed-site sampling design to monitor changes in catch per unit effort (CPUE) of native bluehead suckers Catostomus discobolus, flannelmouth suckers C. latipinnis, roundtail chub Gila robusta, and speckled dace Rhinichthys osculus, as well as nonnative creek chub Semotilus atromaculatus and white suckers C. commersonii. When one-pass backpack electrofishing was used, detection of 10% or 25% changes in CPUE (fish/100 m) at 60% statistical power required 50-1,000 randomly sampled reaches among species regardless of sampling design. However, use of a fixed-site sampling design with 25-50 reaches greatly enhanced the ability to detect changes in CPUE. The addition of seining did not appreciably reduce required effort. When detection of 25-50% changes in CPUE of native and nonnative fishes is acceptable, we recommend establishment of 25-50 fixed reaches sampled by one-pass electrofishing in Muddy Creek. Because Muddy Creek has habitat and fish assemblages characteristic of other headwater streams in the UCRB, our results are likely to apply to many other streams in the basin. ?? Copyright by the American Fisheries Society 2006.

Respiratory diseases and allergic sensitization in swine breeders: a population-based cross-sectional study.

PubMed

Galli, Luigina; Facchetti, Susanna; Raffetti, Elena; Donato, Francesco; D'Anna, Mauro

2015-11-01

The daily occupation as a swine breeder involves exposure to several bacterial components and organic dusts and inhalation of a large amount of allergens. To investigate the risk of respiratory diseases and atopy in swine breeders compared with the general population living in the same area. A population-based cross-sectional study was conducted in an agricultural area of northern Italy that enrolled a random sample of resident male breeders and non-breeders. Demographic features, comorbidities, and presence of allergic respiratory disease were retrieved through interview. Prick tests for common allergens were performed. An evaluation of pollen and mold in air samples taken inside and outside some swine confinement buildings also was performed. One hundred one male breeders (78 native-born, mean age ± SD 43.0 ± 11.1 years) and 82 non-breeders (43.0 ± 11.1 years) were enrolled. When restricting the analysis to native-born subjects, breeders vs non-breeders showed a lower prevalence of respiratory allergy (12.8% vs 31.1%, respectively, P = .002), asthma (6.4% vs 15.8%, P = .059), rhinitis (16.7% vs 51.2%, P < .001), persistent cough (5.1% vs 15.9%, P = .028), and sensitization to grass (7.7% vs 25.6%, P = .002). There was no difference in prick test positivity, polysensitization, nasal cytologic pattern, forced expiratory volume in 1 second, and the ratio of forced expiratory volume in 1 second to forced vital capacity between breeders and non-breeders. Air concentration of molds and pollens was lower inside than outside the swine buildings investigated, particularly when the pigs were inside vs outside the buildings. This study suggests that swine breeding does not increase, and might decrease, the risk of pollen sensitization and allergic disease. Copyright © 2015 American College of Allergy, Asthma & Immunology. Published by Elsevier Inc. All rights reserved.

Oak forest exploitation and black-locust invasion caused severe shifts in epiphytic lichen communities in Northern Italy.

PubMed

Nascimbene, Juri; Marini, Lorenzo

2010-10-15

In the last two centuries, native European oak forests have undergone a dramatic decline related to increasing human pressure for agriculture and urbanization. Oak forests were either completely eradicated and transformed into agricultural landscapes or replaced by second-growth formations. Intensive forest management and the replacement of native forests with production forests or arable lands are recognized amongst the main threats to many lichens in Europe. In this study, we used historical information on the epiphytic lichen biota which was hosted in a native oak-dominated forest of Northern Italy to identify shifts of lichen communities due to the changes in land use which occurred during the last two centuries. We also compared the epiphytic lichen communities inhabiting remnant oak forests with those found in the habitats that have replaced native forests: black-locust forests and agrarian landscapes. Almost all the species sampled during the 19th century are now extinct. The loss of native habitat and the subsequent invasion by black locust were probably the most influential factors which affected the composition of lichen communities, causing the local extinction of most of the species historically recorded. Despite the fact that oak remnants host only a few species which were historically recorded, and that they currently are the lichen poorest habitat in the study region, they host lichen assemblages differing from those of black-locust forests and agrarian stands. In these habitats lichen assemblages are mainly composed of species adapted to well-lit, dry conditions and tolerating air pollution and eutrophication. This pattern is likely to be common also in other lowland and hilly regions throughout Northern Italy where oak forests are targeted among the habitats of conservation concern at the European level. For this reason, a national strategy for biodiversity conservation and monitoring of lowlands forests should provide the framework for local restoration projects. Copyright © 2010 Elsevier B.V. All rights reserved.

Environmental Assessment for Anti-Terrorism/Force Protection Upgrades at Beale Air Force Base, California

DTIC Science & Technology

2004-04-01

triple-awn grass, annual fescues, and foxtail barley . Intermixed with these dominant grasses are an assemblage of native and non-native forb species...as a wheat- stem rust (fungal disease) biological production test site. Chemicals associated with the wheat- stem rust program included freon, carbon...Carboxide treatment (using a solution of 10 percent ethylene oxide and 90 percent carbon dioxide) was used to destroy the rust fungus stocks. Residual

Effective Teachers: Perceptions of Native American Students in Rural Areas.

ERIC Educational Resources Information Center

Prater, Greg; And Others

This paper examines perceptions of Native American students regarding effective practices of non-Native teachers. A survey of students in grades 3-12 in 3 rural school districts on the Navajo Reservation (Arizona) questioned 148 Navajo students and 10 non-Native students. The sample included 28 special needs students (17.7 percent). The survey…

Determination of the structural changes by Raman and {sup 13}C CP/MAS NMR spectroscopy on native corn starch with plasticizers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cozar, O.; Filip, C.; Tripon, C.

The plasticizing - antiplasticizing effect of water and glycerol contents on native corn starch samples is investigated by FT-Raman and {sup 13}C CP/MAS NMR spectroscopy. The presence of both amorphous and crystalline structural phases was evidenced in pure native corn starch and also in the samples containing plasticizers. Among the crystalline starch structures, the A- and V- types were suggested by CP/MAS NMR spectra.

Environmental Assessment for the Removal of a Flightline Bird Air Strike Hazard, Eielson Air Force Base, Alaska

DTIC Science & Technology

2007-01-01

periphery of the lake grows emergent aquatic vegetation such as typhus and different sedge varieties. 3.2.2 Aquatic/Fishery Resources 3.2.2.1...that 98.1 percent of Eielson native wetlands are of low quality. Most of these wetlands are classified as black spruce or alder/willow scrub /shrub

Patterns of understory diversity in mixed coniferous forests of southern California impacted by air pollution.

PubMed

Allen, Edith B; Temple, Patrick J; Bytnerowicz, Andrzej; Arbaugh, Michael J; Sirulnik, Abby G; Rao, Leela E

2007-03-21

The forests of the San Bernardino Mountains have been subject to ozone and nitrogen (N) deposition for some 60 years. Much work has been done to assess the impacts of these pollutants on trees, but little is known about how the diverse understory flora has fared. Understory vegetation has declined in diversity in response to elevated N in the eastern U.S. and Europe. Six sites along an ozone and N deposition gradient that had been part of a long-term study on response of plants to air pollution beginning in 1973 were resampled in 2003. Historic ozone data and leaf injury scores confirmed the gradient. Present-day ozone levels were almost half of these, and recent atmospheric N pollution concentrations confirmed the continued air pollution gradient. Both total and extractable soil N were higher in sites on the western end of the gradient closer to the urban source of pollution, pH was lower, and soil carbon (C) and litter were higher. The gradient also had decreasing precipitation and increasing elevation from west to east. However, the dominant tree species were the same across the gradient. Tree basal area increased during the 30-year interval in five of the sites. The two westernmost sites had 30-45% cover divided equally between native and exotic understory herbaceous species, while the other sites had only 3-13% cover dominated by native species. The high production is likely related to higher precipitation at the western sites as well as elevated N. The species richness was in the range of 24 to 30 in four of the sites, but one site of intermediate N deposition had 42 species, while the easternmost, least polluted site had 57 species. These were primarily native species, as no site had more than one to three exotic species. In three of six sites, 20-40% of species were lost between 1973 and 2003, including the two westernmost sites. Two sites with intermediate pollution had little change in total species number over 30 years, and the easternmost site had more species in 2003. The easternmost site is also the driest and has the most sunlight filtering to the forest floor, possibly accounting for the higher species richness. The confounding effects of the precipitation gradient and possibly local disturbances do not show a simple correlation of air pollution with patterns of native and invasive species cover and richness. Nevertheless, the decline of native species and dominance by exotic species in the two westernmost polluted sites is cause for concern that air pollution is affecting the understory vegetation adversely.

7 CFR 1415.3 - Definitions.

Code of Federal Regulations, 2013 CFR

2013-01-01

... animals, native plant and animal biodiversity, soil erosion control, forage production, and air and water... growth habit. Significant decline means a decrease of a species population to such an extent that it...

7 CFR 1415.3 - Definitions.

Code of Federal Regulations, 2012 CFR

2012-01-01

... animals, native plant and animal biodiversity, soil erosion control, forage production, and air and water... growth habit. Significant decline means a decrease of a species population to such an extent that it...

7 CFR 1415.3 - Definitions.

Code of Federal Regulations, 2014 CFR

2014-01-01

... animals, native plant and animal biodiversity, soil erosion control, forage production, and air and water... growth habit. Significant decline means a decrease of a species population to such an extent that it...

Exploring the Digital Natives among Pre-Service Teachers in Turkey: A Cross-Cultural Validation of the Digital Native Assessment Scale

ERIC Educational Resources Information Center

Teo, Timothy; Kabakçi Yurdakul, Isil; Ursavas, Ömer Faruk

2016-01-01

This study aims to explore the digital natives among a sample of pre-service teachers and in the process, examine the validity of a Turkish adaptation of the digital native assessment scale (DNAS) [Teo, T., & Fan, X. (2013). "Coefficient alpha and beyond: Issues and alternatives for educational research." "The Asia-Pacific…

Significant genetic differentiation between native and introduced silver carp (Hypophthalmichthys molitrix) inferred from mtDNA analysis

USGS Publications Warehouse

Li, S.-F.; Xu, J.-W.; Yang, Q.-L.; Wang, C.H.; Chapman, D.C.; Lu, G.

2011-01-01

Silver carp Hypophthalmichthys molitrix (Cyprinidae) is native to China and has been introduced to over 80 countries. The extent of genetic diversity in introduced silver carp and the genetic divergence between introduced and native populations remain largely unknown. In this study, 241 silver carp sampled from three major native rivers and two non-native rivers (Mississippi River and Danube River) were analyzed using nucleotide sequences of mitochondrial COI gene and D-loop region. A total of 73 haplotypes were observed, with no haplotype found common to all the five populations and eight haplotypes shared by two to four populations. As compared with introduced populations, all native populations possess both higher haplotype diversity and higher nucleotide diversity, presumably a result of the founder effect. Significant genetic differentiation was revealed between native and introduced populations as well as among five sampled populations, suggesting strong selection pressures might have occurred in introduced populations. Collectively, this study not only provides baseline information for sustainable use of silver carp in their native country (i.e., China), but also offers first-hand genetic data for the control of silver carp in countries (e.g., the United States) where they are considered invasive.

Installation Restoration Program Records Search for George Air Force Base, California

DTIC Science & Technology

1982-06-01

located in the Mojave Desert. The climate is arid with long hot summers and short cool winters. The mean 3relative humidity ranges from 27 percent in...abitat Native plant and animal comunities on base reflect the dry climatic conditions of an upland desert region. Along the eastern border of the bas...soil conditions because of a low ground- water table and the dry climatic conditions. While native systems are disrupted in the immediate vicinity of

Sequential reductive and oxidative conditions used to biodegradation of organochlorine pesticides by native bacteria.

NASA Astrophysics Data System (ADS)

Kopytko, M.; Correa-Torres, S. N.; Plata, A.

2016-07-01

Despite restrictions and bans on the use of many organochlorine pesticides in the 1970s and 1980s, they continue to persist in the environment today. This is the case of Agustin Codazzi, Cesar where the organochlorine pesticides were buried without control in the soil in 1999, after being banned their use. Nowadays is necessary to find the best method, which allows remediation of this soils. Reductive dechlorination is the first and limiting step in the metabolism of many organochlorine pesticides by anaerobic bacteria. In this study the reductive conditions were enhanced by addition of biogas as an auxiliary electron donors.The soil sample was taken from the zone at Agustin Codazzi, Cesar, and their characteristics correspond to a loam soil with low nutrient and slight compaction. The experimental tests were performed by varying the exposure time of a reducer to oxidative environment. Reductive conditions were enhanced by methane from biogas and oxidative environment was generated by air blown to stimulate a metabolic process of the soil native bacteria. Removals between 70 and 78.9% of compounds such as 4,4'-DDT, 4, 4'-DDD, 4,4'-DDE, Endrin and Trans- Chlordane, detected by gas chromatography analysis, were achieved under reductive/oxidative conditions during 120 days. Furthermore, bacterial strains capable of degrading organochlorine pesticides were selected from the native bacteria, and identified by the purified and identified based on its morphological characteristics and 16S rDNA sequencing.

Analyses of native water, bottom material, elutriate samples, and dredged material from selected southern Louisiana waterways and selected areas in the Gulf of Mexico, 1979-81

USGS Publications Warehouse

Lurry, Dee L.

1983-01-01

The U.S. Geological Survey was requested by the U.S. Army Corps of Engineers, New Orleans District, to provide water-quality data to evaluate environmental effects of dredging activities in selected reaches of the Calcasieu River in southwestern Louisiana. Samples were collected from the upper and lower Calcasieu River between January 1980 and March 1981. Thirty-three samples (22 native-water and 11 effluent) were collected from eleven dredging sites. In addition, a series of elutriate studies were conducted between July 1979 and July 1981 to determine water quality as a basis for assessing possible environmental effects of proposed dredging activities in the following areas: Grand Bayou and Martins Canal near Happy Jack, unnamed bayou near Port Sulphur, Grand Bayou and Pipeline Canal near Port Sulphur and Bayou des Plantins near Empire; Mississippi River Gulf Outlet and Inner Harbor Navigation Canal; Southwest Pass; Barataria Bay; Atchafalaya Bay at Eugene Island; Calcasieu Ship Channel. Samples of native water and samples of bottom material were collected from 22 different sites and elutriate (mixtures of native water and bottom material) samples were prepared and analyzed. Four proposed ocean-disposal sites were sampled for bottom material only. Samples were analyzed for selected chemical and biological constituents and physical properties. (USGS)

Successful application of lead isotopes in source apportionment, legal proceedings, remediation and monitoring.

PubMed

Gulson, Brian; Korsch, Michael; Winchester, Wayne; Devenish, Matthew; Hobbs, Thad; Main, Cleve; Smith, Gerard; Rosman, Kevin; Howearth, Lynette; Burn-Nunes, Laurie; Seow, Jimmy; Oxford, Cameron; Yun, Gracie; Gillam, Lindsay; Crisp, Michelle

2012-01-01

In late 2006, the seaside community in Esperance Western Australia was alerted to thousands of native bird species dying. The source of the lead (Pb) was determined by Pb isotopes to derive from the handling of Pb carbonate concentrate through the Port, which began in July 2005. Concern was expressed for the impact of this on the community. Our objectives were to employ Pb isotope ratios to evaluate the source of Pb in environmental samples for use in legal proceedings, and for use in remediation and monitoring. Isotope measurements were undertaken of bird livers, plants, drinking water, soil, harbour sediments, air, bulk ceiling dust, gutter sludge, surface swabs and blood. The unique lead isotopic signature of the contaminating Pb carbonate enabled diagnostic apportionment of lead in samples. Apart from some soil and water samples, the proportion of contaminating Pb was >95% in the environmental samples. Lead isotopes were critical in resolving legal proceedings, are being used in the remediation of premises, were used in monitoring of workers involved in the decontamination of the storage facility, and monitoring transport of the concentrate through another port facility. Air samples show the continued presence of contaminant Pb, more than one year after shipping of concentrate ceased, probably arising from dust resuspension. Brief details of the comprehensive testing and cleanup of the Esperance community are provided along with the role of the Community. Lead isotopic analyses can provide significant benefits to regulatory agencies, interested parties, and the community where the signature is able to be characterised with a high degree of certainty. Crown Copyright © 2011. Published by Elsevier Inc. All rights reserved.

Focal Plane Array Technology for IR Detectors

DTIC Science & Technology

1996-06-01

samples are determined. Our results on p-(HgCd)Te coated with passivation layers are evident from Figs 3.1 and 3.2. In the first case (native sulphides ...samples are evident from the Table II. We studied influence of (a) atmosphere, (b) ZnS passivation, (c) native sulphides + ZnS passivation. The (HgCd)Te...native sulphides + ZnS, full symbols RH<O, open symbols RH>O. 10 5 6408A3 10- 010o E 102 000 2 days after passivation 10 : 80 days after passivation 0

Vanadium K-edge X-ray absorption spectroscopy of bromoperoxidase from Ascophyllum nodosum

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arber, J.M.; de Boer, E.; Garner, C.D.

Bromoperoxidase from Ascophyllum nodusum was the first vanadium-containing enzyme to be isolated. X-ray absorption spectra have now been collected in order to investigate the coordination of vanadium in the native, native plus bromide, native plus hydrogen peroxide, and dithionite-reduced forms of the enzyme. The edge and X-ray absorption near-edge structures show that, in the four samples studied, it is only on reduction of the native enzyme that the metal site is substantially altered. In addition, these data are consistent with the presence of vanadium(IV) in the reduced enzyme and vanadium(V) in the other samples. Extended X-ray absorption fine structure datamore » confirm that there are structural changes at the metal site on reduction of the native enzyme, notably a lengthening of the average inner-shell distance, and the presence of terminal oxygen together with histidine and oxygen-donating residues.« less

Biomonitoring approach with mussel Mytilus galloprovincialis (Lmk) and clam Ruditapes philippinarum (Adams and Reeve, 1850) in the Lagoon of Venice.

PubMed

Moschino, Vanessa; Delaney, Eugenia; Meneghetti, Francesca; Ros, Luisa Da

2011-06-01

Transplanted Mytilus galloprovincialis and native Ruditapes philippinarum were deployed in 10 sampling stations with different pollution impact within the Lagoon of Venice to evaluate the temporal variations and the suitability of the following cytochemical and histochemical biomarkers just as indicators of environmental stress: lysosomal membrane stability, lipofuscins, neutral lipids and lysosome to cytoplasm volume ratio. The physiological status of the organisms was also investigated by determining the survival in air capability and the reburrowing rate (clams). The biological parameters were assessed in June and October. Furthermore, for a better definition of the environmental aspects of the study sites, heavy metal, PAH and PCB concentrations were also evaluated in the sediments. As a whole, the biological responses examined in both species from all the sampling sites showed significant differences between the two seasonal campaigns, only lysosomal membrane stability exhibited less variability. Pollutants in sediments generally showed low-intermediate contamination levels, few hotspots persisting mostly in the inner areas of the lagoon, the most influenced by the industrial zone. Transplanted mussels were more responsive than native clams and the biological responses of both species varied temporally. The range of the spatial variability was always narrow and reflected only partially the broader variability shown by the chemical content in the sediments. In this sense, biological responses seemed to be particularly influenced by the high temporal and spatial heterogeneity that characterise the Lagoon of Venice, as well as most of the transitional environments.

Native Reactions to Non-Native Speech: A Review of Empirical Research.

ERIC Educational Resources Information Center

Eisenstein, Miriam

1983-01-01

Recent research on native speakers' reactions to nonnative speech that views listeners, speakers, and language from a variety of perspectives using both objective and subjective research paradigms is reviewed. Studies of error gravity, relative intelligibility of language samples, the role of accent, speakers' characteristics, and context in which…

Dimensions of Acculturation in Native American College Students

ERIC Educational Resources Information Center

Reynolds, Amy L.; Sodano, Sandro M.; Ecklund, Timothy R.; Guyker, Wendy

2012-01-01

Exploratory and confirmatory factor analyses were applied to the responses of two respective independent samples of Native American college students on the Native American Acculturation Scale (NAAS). Three correlated dimensions were found to underlie NAAS items and these dimensions may also comprise a broader higher order dimension of Native…

Faculty as Contributors to Learning for Native American Students

ERIC Educational Resources Information Center

Lundberg, Carol A.; Lowe, Shelly C.

2016-01-01

With a national sample of 700 Native American students who took the National Survey of Student Engagement (NSSE), this study tested the ways faculty interaction and inclusion of diverse perspectives in the classroom contributed to learning for Native American students. Significant predictors of learning were quality academic advising, faculty…

Forest Restoration and Parasitoid Wasp Communities in Montane Hawai’i

PubMed Central

Gould, Rachelle K.; Pejchar, Liba; Bothwell, Sara G.; Brosi, Berry; Wolny, Stacie; Mendenhall, Chase D.; Daily, Gretchen

2013-01-01

Globally, most restoration efforts focus on re-creating the physical structure (flora or physical features) of a target ecosystem with the assumption that other ecosystem components will follow. Here we investigate that assumption by documenting biogeographical patterns in an important invertebrate taxon, the parasitoid wasp family Ichneumonidae, in a recently reforested Hawaiian landscape. Specifically, we test the influence of (1) planting configurations (corridors versus patches), (2) vegetation age, (3) distance from mature native forest, (4) surrounding tree cover, and (5) plant community composition on ichneumonid richness, abundance, and composition. We sampled over 7,000 wasps, 96.5% of which were not native to Hawai’i. We found greater relative richness and abundance of ichneumonids, and substantially different communities, in restored areas compared to mature forest and abandoned pasturelands. Non-native ichneumonids drive these differences; restored areas and native forest did not differ in native ichneumonid abundance. Among restored areas, ichneumonid communities did not differ by planting age or configuration. As tree cover increased within 120 m of a sampling point, ichneumonid community composition increasingly resembled that found in native forest. Similarly, native ichneumonid abundance increased with proximity to native forest. Our results suggest that restoration plantings, if situated near target forest ecosystems and in areas with higher local tree cover, can facilitate restoration of native fauna even in a highly invaded system. PMID:23527171

Forest restoration and parasitoid wasp communities in montane Hawai'i.

PubMed

Gould, Rachelle K; Pejchar, Liba; Bothwell, Sara G; Brosi, Berry; Wolny, Stacie; Mendenhall, Chase D; Daily, Gretchen

2013-01-01

Globally, most restoration efforts focus on re-creating the physical structure (flora or physical features) of a target ecosystem with the assumption that other ecosystem components will follow. Here we investigate that assumption by documenting biogeographical patterns in an important invertebrate taxon, the parasitoid wasp family Ichneumonidae, in a recently reforested Hawaiian landscape. Specifically, we test the influence of (1) planting configurations (corridors versus patches), (2) vegetation age, (3) distance from mature native forest, (4) surrounding tree cover, and (5) plant community composition on ichneumonid richness, abundance, and composition. We sampled over 7,000 wasps, 96.5% of which were not native to Hawai'i. We found greater relative richness and abundance of ichneumonids, and substantially different communities, in restored areas compared to mature forest and abandoned pasturelands. Non-native ichneumonids drive these differences; restored areas and native forest did not differ in native ichneumonid abundance. Among restored areas, ichneumonid communities did not differ by planting age or configuration. As tree cover increased within 120 m of a sampling point, ichneumonid community composition increasingly resembled that found in native forest. Similarly, native ichneumonid abundance increased with proximity to native forest. Our results suggest that restoration plantings, if situated near target forest ecosystems and in areas with higher local tree cover, can facilitate restoration of native fauna even in a highly invaded system.

Woody invasions of urban trails and the changing face of urban forests in the great plains, USA

USGS Publications Warehouse

Nemec, K.T.; Allen, Craig R.; Alai, A.; Clements, G.; Kessler, A.C.; Kinsell, T.; Major, A.; Stephen, B.J.

2011-01-01

Corridors such as roads and trails can facilitate invasions by non-native plant species. The open, disturbed habitat associated with corridors provides favorable growing conditions for many non-native plant species. Bike trails are a corridor system common to many urban areas that have not been studied for their potential role in plant invasions. We sampled five linear segments of urban forest along bike trails in Lincoln, Nebraska to assess the invasion of woody non-native species relative to corridors and to assess the composition of these urban forests. The most abundant plant species were generally native species, but five non-native species were also present: white mulberry (Morus alba), common buckthorn (Rhamnus cathartica), tree-of-heaven (Ailanthus altissima), honeysuckle (Lonicera spp.) and elm (Ulmus spp.). The distribution of two of the woody species sampled, common buckthorn and honeysuckle, significantly decreased with increasing distance from a source patch of vegetation (P = 0.031 and 0.030). These linear habitats are being invaded by non-native tree and shrub species, which may change the structure of these urban forest corridors. If non-native woody plant species become abundant in the future, they may homogenize the plant community and reduce native biodiversity in these areas. ?? 2011 American Midland Naturalist.

The impact of modern migrations on present-day multi-ethnic Argentina as recorded on the mitochondrial DNA genome.

PubMed

Catelli, María Laura; Alvarez-Iglesias, Vanesa; Gómez-Carballa, Alberto; Mosquera-Miguel, Ana; Romanini, Carola; Borosky, Alicia; Amigo, Jorge; Carracedo, Angel; Vullo, Carlos; Salas, Antonio

2011-08-30

The genetic background of Argentineans is a mosaic of different continental ancestries. From colonial to present times, the genetic contribution of Europeans and sub-Saharan Africans has superposed to or replaced the indigenous genetic 'stratum'. A sample of 384 individuals representing different Argentinean provinces was collected and genotyped for the first and the second mitochondrial DNA (mtDNA) hypervariable regions, and selectively genotyped for mtDNA SNPs. This data was analyzed together with additional 440 profiles from rural and urban populations plus 304 from Native American Argentineans, all available from the literature. A worldwide database was used for phylogeographic inferences, inter-population comparisons, and admixture analysis. Samples identified as belonging to hg (hg) H2a5 were sequenced for the entire mtDNA genome. Phylogenetic and admixture analyses indicate that only half of the Native American component in urban Argentineans might be attributed to the legacy of extinct ancestral Argentineans and that the Spanish genetic contribution is slightly higher than the Italian one. Entire H2a5 genomes linked these Argentinean mtDNAs to the Basque Country and improved the phylogeny of this Basque autochthonous clade. The fingerprint of African slaves in urban Argentinean mtDNAs was low and it can be phylogeographically attributed predominantly to western African. The European component is significantly more prevalent in the Buenos Aires province, the main gate of entrance for Atlantic immigration to Argentina, while the Native American component is larger in North and South Argentina. AMOVA, Principal Component Analysis and hgs/haplotype patterns in Argentina revealed an important level of genetic sub-structure in the country. Studies aimed to compare mtDNA frequency profiles from different Argentinean geographical regions (e.g., forensic and case-control studies) should take into account the important genetic heterogeneity of the country in order to prevent false positive claims of association in disease studies or inadequate evaluation of forensic evidence.

The impact of modern migrations on present-day multi-ethnic Argentina as recorded on the mitochondrial DNA genome

PubMed Central

2011-01-01

Background The genetic background of Argentineans is a mosaic of different continental ancestries. From colonial to present times, the genetic contribution of Europeans and sub-Saharan Africans has superposed to or replaced the indigenous genetic 'stratum'. A sample of 384 individuals representing different Argentinean provinces was collected and genotyped for the first and the second mitochondrial DNA (mtDNA) hypervariable regions, and selectively genotyped for mtDNA SNPs. This data was analyzed together with additional 440 profiles from rural and urban populations plus 304 from Native American Argentineans, all available from the literature. A worldwide database was used for phylogeographic inferences, inter-population comparisons, and admixture analysis. Samples identified as belonging to hg (hg) H2a5 were sequenced for the entire mtDNA genome. Results Phylogenetic and admixture analyses indicate that only half of the Native American component in urban Argentineans might be attributed to the legacy of extinct ancestral Argentineans and that the Spanish genetic contribution is slightly higher than the Italian one. Entire H2a5 genomes linked these Argentinean mtDNAs to the Basque Country and improved the phylogeny of this Basque autochthonous clade. The fingerprint of African slaves in urban Argentinean mtDNAs was low and it can be phylogeographically attributed predominantly to western African. The European component is significantly more prevalent in the Buenos Aires province, the main gate of entrance for Atlantic immigration to Argentina, while the Native American component is larger in North and South Argentina. AMOVA, Principal Component Analysis and hgs/haplotype patterns in Argentina revealed an important level of genetic sub-structure in the country. Conclusions Studies aimed to compare mtDNA frequency profiles from different Argentinean geographical regions (e.g., forensic and case-control studies) should take into account the important genetic heterogeneity of the country in order to prevent false positive claims of association in disease studies or inadequate evaluation of forensic evidence. PMID:21878127

Surface oxidation under ambient air--not only a fast and economical method to identify double bond positions in unsaturated lipids but also a reminder of proper lipid processing.

PubMed

Zhou, Ying; Park, Hyejung; Kim, Philseok; Jiang, Yan; Costello, Catherine E

2014-06-17

A simple, fast approach elucidated carbon-carbon double bond positions in unsaturated lipids. Lipids were deposited onto various surfaces and the products from their oxidation in ambient air were observed by electrospray ionization (ESI) mass spectrometry (MS). The most common oxidative products, aldehydes, were detected as transformations at the cleaved double bond positions. Ozonides and carboxylic acids were generated in certain lipids. Investigations of the conditions controlling the appearance of these products indicated that the surface oxidation depends on light and ambient air. Since the lipid oxidation was slower in a high concentration of ozone, singlet oxygen appeared to be a parallel oxidant for unsaturated lipids. The 3-hydroxyl group in the sphingoid base of sulfatides offered some protection from oxidation for the Δ4,5-double bond, slowing its oxidation rate relative to that of the isolated double bond in the N-linked fatty acyl chain. Direct sampling by thin-layer chromatography (TLC)-ESI-MS provides a powerful approach to elucidate detailed structural information on biological samples. Co-localization of the starting lipids and their oxidation products after TLC separation allowed assignment of the native unsaturation sites. Phosphatidylserine and N,N-dimethyl phosphatidylethanolamine isomers in a bovine brain total lipid extract were distinguished on the basis of their oxidation products. Meanwhile, the findings reported herein reveal a potential pitfall in the assignment of structures to lipids extracted from TLC plates because of artifactual oxidation after the plate development.

Richness patterns in the parasite communities of exotic poeciliid fishes.

PubMed

Dove, A D

2000-06-01

Three species of poeciliids (Gambusia holbrooki, Xiphophorus helleri and X. maculatus) and 15 species of ecologically similar native freshwater fishes (mainly eleotrids, ambassids, melanotaeniids and retropinnids) were examined for parasite richness to investigate parasite flux, qualitative differences, quantitative differences and the structuring factors in parasite communities in the 2 fish types in Queensland, Australia. Theory suggests that poeciliids would harbour depauperate parasite communities. Results supported this hypothesis; poeciliids harboured more species-poor parasite infracommunities and regional faunas than natives (P < 0.0001), despite greater sampling effort for the former. Cluster analysis of presence/absence data for poeciliids and the 6 most-sampled native fishes revealed that parasite communities of the 2 fish groups are qualitatively distinct; the proportion of parasite species with complex life-cycles was lower in poeciliids than in native species, and Myxosporea, Microspora, Coccidia and parasitic Crustacea were all absent from poeciliids. Limited exchange of parasite species has occurred between natives and poeciliids. Logistic ordinal regression analysis revealed that fish origin (exotic or native), environmental disturbance and host sex were all significant determinants of parasite community richness (P < 0.05). Theoretical modelling suggests that poeciliids are at a competitive advantage over native fishes because of their lack of parasites.

Non-native earthworms promote plant invasion by ingesting seeds and modifying soil properties

NASA Astrophysics Data System (ADS)

Clause, Julia; Forey, Estelle; Lortie, Christopher J.; Lambert, Adam M.; Barot, Sébastien

2015-04-01

Earthworms can have strong direct effects on plant communities through consumption and digestion of seeds, however it is unclear how earthworms may influence the relative abundance and composition of plant communities invaded by non-native species. In this study, earthworms, seed banks, and the standing vegetation were sampled in a grassland of central California. Our objectives were i) to examine whether the abundances of non-native, invasive earthworm species and non-native grassland plant species are correlated, and ii) to test whether seed ingestion by these worms alters the soil seed bank by evaluating the composition of seeds in casts relative to uningested soil. Sampling locations were selected based on historical land-use practices, including presence or absence of tilling, and revegetation by seed using Phalaris aquatica. Only non-native earthworm species were found, dominated by the invasive European species Aporrectodea trapezoides. Earthworm abundance was significantly higher in the grassland blocks dominated by non-native plant species, and these sites had higher carbon and moisture contents. Earthworm abundance was also positively related to increased emergence of non-native seedlings, but had no effect on that of native seedlings. Plant species richness and total seedling emergence were higher in casts than in uningested soils. This study suggests that there is a potential effect of non-native earthworms in promoting non-native and likely invasive plant species within grasslands, due to seed-plant-earthworm interactions via soil modification or to seed ingestion by earthworms and subsequent cast effects on grassland dynamics. This study supports a growing body of literature for earthworms as ecosystem engineers but highlights the relative importance of considering non-native-native interactions with the associated plant community.

Analysis of Proteins, Protein Complexes, and Organellar Proteomes Using Sheathless Capillary Zone Electrophoresis - Native Mass Spectrometry

NASA Astrophysics Data System (ADS)

Belov, Arseniy M.; Viner, Rosa; Santos, Marcia R.; Horn, David M.; Bern, Marshall; Karger, Barry L.; Ivanov, Alexander R.

2017-12-01

Native mass spectrometry (MS) is a rapidly advancing field in the analysis of proteins, protein complexes, and macromolecular species of various types. The majority of native MS experiments reported to-date has been conducted using direct infusion of purified analytes into a mass spectrometer. In this study, capillary zone electrophoresis (CZE) was coupled online to Orbitrap mass spectrometers using a commercial sheathless interface to enable high-performance separation, identification, and structural characterization of limited amounts of purified proteins and protein complexes, the latter with preserved non-covalent associations under native conditions. The performance of both bare-fused silica and polyacrylamide-coated capillaries was assessed using mixtures of protein standards known to form non-covalent protein-protein and protein-ligand complexes. High-efficiency separation of native complexes is demonstrated using both capillary types, while the polyacrylamide neutral-coated capillary showed better reproducibility and higher efficiency for more complex samples. The platform was then evaluated for the determination of monoclonal antibody aggregation and for analysis of proteomes of limited complexity using a ribosomal isolate from E. coli. Native CZE-MS, using accurate single stage and tandem-MS measurements, enabled identification of proteoforms and non-covalent complexes at femtomole levels. This study demonstrates that native CZE-MS can serve as an orthogonal and complementary technique to conventional native MS methodologies with the advantages of low sample consumption, minimal sample processing and losses, and high throughput and sensitivity. This study presents a novel platform for analysis of ribosomes and other macromolecular complexes and organelles, with the potential for discovery of novel structural features defining cellular phenotypes (e.g., specialized ribosomes). [Figure not available: see fulltext.

75 FR 38540 - Notice of Availability of Final Supplemental Environmental Impact Statement Updating Cumulative...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-07-02

... cumulative impacts including potential impacts to air quality, minerals, Native American and cultural... additional 350 feet below what had been previously authorized, to expand waste rock disposal facilities and...

Wild and native plants and mushrooms sold in the open-air markets of south-eastern Poland.

PubMed

Kasper-Pakosz, Renata; Pietras, Marcin; Łuczaj, Łukasz

2016-10-07

The study of plants and fungi sold in open-air markets is an important part of ethnobotanical enquiry. Only few such studies were carried out in Europe. Four of the largest open-air markets of south-eastern Poland were visited regularly, and the plants sold in them were recorded between 2013 and 2015. The aim of the study was to record native and/or wild species sold in the markets. All the plants sold in the markets were photographed regularly. In each market, 25 sellers were interviewed. Voucher specimens were collected and fungi were identified using DNA barcoding. Altogether, 468 species of plants were recorded, 117 of them native to south-eastern Poland - 19 only collected from the wild and 11 both wild and cultivated. Seventeen of the species are under legal protection. Most protected plants were sold from cultivation, although proper authorization procedures had not been performed. Thirty-two species of fungi were sold (including two cultivated species), all of them for culinary purposes. Two species (Lactarius quieticolor, Leccinum schistophilum) are new to the mycobiota of Poland. Ornamental plants constituted a large section of the market, and they dominated the group of native species. Food plants dominated among wild-collected plants and were sold mainly as fruits for jams, juices and alcoholic drinks, or as culinary herbs. Very few medicinal or green vegetable plants were sold. An interesting feature of the markets was the sale of Ledum palustre as an insect repellent. Finding two species of fungi which are new to Poland highlights the importance of DNA barcoding in ethnomycological studies. Most items in the markets are ornamental plants, or edible fruits and mushrooms. Very few medicinal plants and green vegetables are sold, which differentiates the markets from southern European ones. Such a pattern is probably the model for most central European markets.

Inquiry Based Projects Using Student Ozone Measurements and the Status of Using Plants as Bio-Indicators

NASA Astrophysics Data System (ADS)

Ladd, I. H.; Fishman, J.; Pippin, M.; Sachs, S.; Skelly, J.; Chappelka, A.; Neufeld, H.; Burkey, K.

2006-05-01

Students around the world work cooperatively with their teachers and the scientific research community measuring local surface ozone levels using a hand-held optical scanner and ozone sensitive chemical strips. Through the GLOBE (Global Learning and Observations to Benefit the Environment) Program, students measuring local ozone levels are connected with the chemistry of the air they breathe and how human activity impacts air quality. Educational tools have been developed and correlated with the National Science and Mathematics Standards to facilitate integrating the study of surface ozone with core curriculum. Ozone air pollution has been identified as the major pollutant causing foliar injury to plants when they are exposed to concentrations of surface ozone. The inclusion of native and agricultural plants with measuring surface ozone provides an Earth system approach to understanding surface ozone. An implementation guide for investigating ozone induced foliar injury has been developed and field tested. The guide, Using Sensitive Plants as Bio-Indicators of Ozone Pollution, provides: the background information and protocol for implementing an "Ozone Garden" with native and agricultural plants; and, a unique opportunity to involve students in a project that will develop and increase their awareness of surface ozone air pollution and its impact on plants.

The State of Native American Youth Health.

ERIC Educational Resources Information Center

Minnesota Univ., Minneapolis. Div. of General Pediatrics and Adolescent Health.

Between 1988 and 1990, nearly 14,000 American Indian and Alaska Native adolescents living in rural areas and on reservations participated in the Adolescent Health Survey of health and risk behaviors. Although the findings may not be representative of Native adolescents, as a convenience sample was used, some findings of the survey were: (1) less…

General method for rapid purification of native chromatin fragments.

PubMed

Kuznetsov, Vyacheslav I; Haws, Spencer A; Fox, Catherine A; Denu, John M

2018-05-24

Biochemical, proteomic and epigenetic studies of chromatin rely on the efficient ability to isolate native nucleosomes in high yield and purity. However, isolation of native chromatin suitable for many downstream experiments remains a challenging task. This is especially true for the budding yeast Saccharomyces cerevisiae, which continues to serve as an important model organism for the study of chromatin structure and function. Here, we developed a time- and cost-efficient universal protocol for isolation of native chromatin fragments from yeast, insect, and mammalian cells. The resulting protocol preserves histone posttranslational modification in the native chromatin state, and is applicable for both parallel multi-sample spin-column purification and large scale isolation. This protocol is based on the efficient and stable purification of polynucleosomes, features a combination of optimized cell lysis and purification conditions, three options for chromatin fragmentation, and a novel ion-exchange chromatographic purification strategy.  The procedure will aid chromatin researchers interested in isolating native chromatin material for biochemical studies, and as a mild, acid- and detergent-free sample preparation method for mass-spectrometry analysis. Published under license by The American Society for Biochemistry and Molecular Biology, Inc.

75 FR 38539 - Notice of Availability of Final Supplemental Environmental Impact Statement Updating Cumulative...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-07-02

... impacts to air quality, minerals, Native American and cultural resources, water, vegetation, grazing..., including construction of five shafts to access the ore bodies, shaft hoists, a waste rock disposal facility...

Micrometeorological, evapotranspiration, and soil-moisture data at the Amargosa Desert Research site in Nye County near Beatty, Nevada, 2006-11

USGS Publications Warehouse

Arthur, Jonathan M.; Johnson, Michael J.; Mayers, C. Justin; Andraski, Brian J.

2012-11-13

This report describes micrometeorological, evapotranspiration, and soil-moisture data collected since 2006 at the Amargosa Desert Research Site adjacent to a low-level radio-active waste and hazardous chemical waste facility near Beatty, Nevada. Micrometeorological data include precipitation, solar radiation, net radiation, air temperature, relative humidity, saturated and ambient vapor pressure, wind speed and direction, barometric pressure, near-surface soil temperature, soil-heat flux, and soil-water content. Evapotranspiration (ET) data include latent-heat flux, sensible-heat flux, net radiation, soil-heat flux, soil temperature, air temperature, vapor pressure, and other principal energy-budget data. Soil-moisture data include periodic measurements of volumetric water-content at experimental sites that represent vegetated native soil, devegetated native soil, and simulated waste disposal trenches - maximum measurement depths range from 5.25 to 29.25 meters. All data are compiled in electronic spreadsheets that are included with this report.

Root resistance to cavitation is accurately measured using a centrifuge technique.

PubMed

Pratt, R B; MacKinnon, E D; Venturas, M D; Crous, C J; Jacobsen, A L

2015-02-01

Plants transport water under negative pressure and this makes their xylem vulnerable to cavitation. Among plant organs, root xylem is often highly vulnerable to cavitation due to water stress. The use of centrifuge methods to study organs, such as roots, that have long vessels are hypothesized to produce erroneous estimates of cavitation resistance due to the presence of open vessels through measured samples. The assumption that roots have long vessels may be premature since data for root vessel length are sparse; moreover, recent studies have not supported the existence of a long-vessel artifact for stems when a standard centrifuge technique was used. We examined resistance to cavitation estimated using a standard centrifuge technique and compared these values with native embolism measurements for roots of seven woody species grown in a common garden. For one species we also measured vulnerability using single-vessel air injection. We found excellent agreement between root native embolism and the levels of embolism measured using a centrifuge technique, and with air-seeding estimates from single-vessel injection. Estimates of cavitation resistance measured from centrifuge curves were biologically meaningful and were correlated with field minimum water potentials, vessel diameter (VD), maximum xylem-specific conductivity (Ksmax) and vessel length. Roots did not have unusually long vessels compared with stems; moreover, root vessel length was not correlated to VD or to the vessel length of stems. These results suggest that root cavitation resistance can be accurately and efficiently measured using a standard centrifuge method and that roots are highly vulnerable to cavitation. The role of root cavitation resistance in determining drought tolerance of woody species deserves further study, particularly in the context of climate change. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Analyses of native water, bottom material, and elutriate samples of southern Louisiana waterways, 1977-78

USGS Publications Warehouse

Dupuy, Alton J.; Couvillion, Nolan P.

1979-01-01

From March 1977 to July 1978 the U.S. Geological Survey in cooperation with the U.S. Army Corps of Engineers conducted a series of elutriate studies to determine water quality in selected reaches of major navigable waterways of southern Louisiana. Sample were collected from the Mississippi River-Gulf Outlet areas; Mississippi River, South Pass; Baptiste Collette Bayou; Tiger Pass area; Baou Long; Bayou Barataria and Barataria Bay Waterway area (gulf section); Bayou Segnette Waterway, Lake Pontchartrain near Tangipahoa River mouth; Bayou Grand Caillou; Bayou la Carpe at Homa; Houma Navigation Canal and Terrebonne Bay; Bayou Boeuf, Bayou Chene, and Baou Black, Atchafalaya River Channel, Atchafalaya Bay; Old River Lock tailbay; Red River below mouth of Black River; Freshwaer Canal; Mermentau River and Lake Arthur Mermentau River outlet; and Calcasieu Ship Channel. The studies were initiated at the request of the U.S. Army Corps of Engineers to evaluate possible environmental effects of proposed dredging activities in those waterways. The U.S. Army Corps of Engineers and U.S. Geological Survey collected 189 samples of native water and 172 samples of bottom (bed) material from 163 different sites. A total of 117 elutriates (Mixtures of native water and bottom material) were prepared. The native water and elutriate samples were analyzed for selected metals, pesticides, nutrients organics, and pysical constituents. Particle-size determinations were made on bottom-material samples. (Kosco-USGS)

Internet Usage by Native Americans with Disabilities Living on American Indian Reservations in the Great Plains

ERIC Educational Resources Information Center

De Mars, AnnMaria

2010-01-01

It has been assumed that, due to limited Internet access, electronic media is an ineffective means for information dissemination to Native Americans with disabilities. In this investigation, we surveyed a sample of 467 households of Native Americans with disabilities living on Great Plains reservations regarding access to electronic resources. Of…

Environmental Impact Analysis Process. Deployment Area Selection and Land Withdrawal/Acquisition DEIS. Chapter IV. Part II. Environmental Consequences to the Study Regions and Operating Base Vicinities.

DTIC Science & Technology

1980-12-01

PARMER COUNTY, TX. FAmt- M R LUNG IE ’ ALEA LONG Tam NATIVE *-X INUCED CHNGE NATIVE N-x INDE CANG 0( above normal growth baseline) ( above normal...your family, the clean air to see the next mountain and the freedom to climb it. The concerns expressed by local residents about population growth and... mountain passes, where capacity is severely reduced by steep grades and winding alignment, congestion might occur at times due to slow moving trucks

Quantitative trace analysis of polyfluorinated alkyl substances (PFAS) in ambient air samples from Mace Head (Ireland): A method intercomparison

NASA Astrophysics Data System (ADS)

Jahnke, Annika; Barber, Jonathan L.; Jones, Kevin C.; Temme, Christian

A method intercomparison study of analytical methods for the determination of neutral, volatile polyfluorinated alkyl substances (PFAS) was carried out in March, 2006. Environmental air samples were collected in triplicate at the European background site Mace Head on the west coast of Ireland, a site dominated by 'clean' westerly winds coming across the Atlantic. Extraction and analysis were performed at two laboratories active in PFAS research using their in-house methods. Airborne polyfluorinated telomer alcohols (FTOHs), fluorooctane sulfonamides and sulfonamidoethanols (FOSAs/FOSEs) as well as additional polyfluorinated compounds were investigated. Different native and isotope-labelled internal standards (IS) were applied at various steps in the analytical procedure to evaluate the different quantification strategies. Field blanks revealed no major blank problems. European background concentrations observed at Mace Head were found to be in a similar range to Arctic data reported in the literature. Due to trace-levels at the remote site, only FTOH data sets were complete and could therefore be compared between the laboratories. Additionally, FOSEs could partly be included. Data comparison revealed that despite the challenges inherent in analysis of airborne PFAS and the low concentrations, all methods applied in this study obtained similar results. However, application of isotope-labelled IS early in the analytical procedure leads to more precise results and is therefore recommended.

Parental solicitation, parental control, child disclosure, and substance use: native and immigrant Dutch adolescents.

PubMed

Delforterie, Monique J; Verweij, Karin J H; Creemers, Hanneke E; van Lier, Pol A C; Koot, Hans M; Branje, Susan J T; Huizink, Anja C

2016-12-01

The present study examined whether the relation of parental solicitation, parental control, and child disclosure with adolescent alcohol and cannabis use is similar for native and non-Western immigrant Dutch adolescents. Questionnaire data from two study-samples were used with a combined sample of 705 adolescents (mean age 16.2 years; 47.2% female; 25.2% non-Western immigrant background). Native Dutch adolescents reported more weekly alcohol use than immigrant adolescents, while rates of cannabis use by native and immigrant adolescents were similar. Immigrant females reported lower levels of parental solicitation and child disclosure, but higher levels of parental control than native females. There were no differences in the sources of parental knowledge between native and immigrant males. Regression analyses showed no significant interaction effects of parental solicitation, parental control, or child disclosure with ethnic background for both alcohol and cannabis use (all p values > .05). Despite mean level differences in various factors, we did not find evidence of an interaction effect of the sources of parental knowledge with ethnic background on alcohol and cannabis use. This suggests that theories and prevention strategies focusing on these sources of parental knowledge in relation to substance use can be applicable to both native and immigrant Dutch adolescents.

Mapping forest structure and composition from low-density LiDAR for informed forest, fuel, and fire management at Eglin Air Force Base, Florida, USA

Treesearch

Andrew T. Hudak; Benjamin C. Bright; Scott M. Pokswinski; E. Louise Loudermilk; Joseph J. O' Brien; Benjamin S. Hornsby; Carine Klauberg; Carlos A. Silva

2016-01-01

Eglin Air Force Base (AFB) in Florida, in the United States, conserves a large reservoir of native longleaf pine (Pinus palustris Mill.) stands that land managers maintain by using frequent fires. We predicted tree density, basal area, and dominant tree species from 195 forest inventory plots, low-density airborne LiDAR, and Landsat data available across the entirety...

Environmental Assessment: Demolish 452 at Grand Forks Air Force Base

DTIC Science & Technology

2005-12-01

Data Sheet MSL Mean Sea Level µg/m3 Micrograms Per Meter Cubed NAAQS National Ambient Air Quality Standards NAGPRA Native American Graves...elm, cottonwood, and green ash. Dutch elm disease has killed many of the elms. European buckthorn (a highly invasive exotic species), chokecherry...level, with local relief being less that one foot. Land at the base is relatively flat; with elevations ranging from 880 to 920 ft mean sea level (MSL

Prosodic Transfer in Learner and Contact Varieties: Speech Rhythm and Intonation of Buenos Aires Spanish and L2 Castilian Spanish Produced by Italian Native Speakers

ERIC Educational Resources Information Center

Gabriel, Christoph; Kireva, Elena

2014-01-01

A remarkable example of Spanish-Italian contact is the Spanish variety spoken in Buenos Aires (Porteño), which is said to be prosodically "Italianized" due to migration-induced contact. The change in Porteño prosody has been interpreted as a result of transfer from the first language (L1) that occurred when Italian immigrants learned…

Ethnic differences in thermoregulatory responses during resting, passive and active heating: application of Werner's adaptation model.

PubMed

Lee, Joo-Young; Wakabayashi, Hitoshi; Wijayanto, Titis; Hashiguchi, Nobuko; Saat, Mohamed; Tochihara, Yutaka

2011-12-01

For the coherent understanding of heat acclimatization in tropical natives, we compared ethnic differences between tropical and temperate natives during resting, passive and active heating conditions. Experimental protocols included: (1) a resting condition (an air temperature of 28°C with 50% RH), (2) a passive heating condition (28°C with 50% RH; leg immersion in a hot tub at a water temperature of 42°C), and (3) an active heating condition (32°C with 70% RH; a bicycle exercise). Morphologically and physically matched tropical natives (ten Malaysian males, MY) and temperate natives (ten Japanese males, JP) participated in all three trials. The results saw that: tropical natives had a higher resting rectal temperature and lower hand and foot temperatures at rest, smaller rise of rectal temperature and greater temperature rise in bodily extremities, and a lower sensation of thirst during passive and active heating than the matched temperate natives. It is suggested that tropical natives' homeostasis during heating is effectively controlled with the improved stability in internal body temperature and the increased capability of vascular circulation in extremities, with a lower thirst sensation. The enhanced stability of internal body temperature and the extended thermoregulatory capability of vascular circulation in the extremities of tropical natives can be interpreted as an interactive change to accomplish a thermal dynamic equilibrium in hot environments. These heat adaptive traits were explained by Wilder's law of initial value and Werner's process and controller adaptation model.

Mangrove species' responses to winter air temperature extremes in China

USGS Publications Warehouse

Chen, Luzhen; Wang, Wenqing; Li, Qingshun Q.; Zhang, Yihui; Yang, Shengchang; Osland, Michael J.; Huang, Jinliang; Peng, Congjiao

2017-01-01

The global distribution and diversity of mangrove forests is greatly influenced by the frequency and intensity of winter air temperature extremes. However, our understanding of how different mangrove species respond to winter temperature extremes has been lacking because extreme freezing and chilling events are, by definition, relatively uncommon and also difficult to replicate experimentally. In this study, we investigated species-specific variation in mangrove responses to winter temperature extremes in China. In 10 sites that span a latitudinal gradient, we quantified species-specific damage and recovery following a chilling event, for mangrove species within and outside of their natural range (i.e., native and non-native species, respectively). To characterize plant stress, we measured tree defoliation and chlorophyll fluorescence approximately one month following the chilling event. To quantify recovery, we measured chlorophyll fluorescence approximately nine months after the chilling event. Our results show high variation in the geographic- and species-specific responses of mangroves to winter temperature extremes. While many species were sensitive to the chilling temperatures (e.g., Bruguiera sexangula and species in the Sonneratia and Rhizophora genera), the temperatures during this event were not cold enough to affect certain species (e.g., Kandelia obovata, Aegiceras corniculatum, Avicennia marina, and Bruguiera gymnorrhiza). As expected, non-native species were less tolerant of winter temperature extremes than native species. Interestingly, tidal inundation modulated the effects of chilling. In comparison with other temperature-controlled mangrove range limits across the world, the mangrove range limit in China is unique due to the combination of the following three factors: (1) Mangrove species diversity is comparatively high; (2) winter air temperature extremes, rather than means, are particularly intense and play an important ecological role; and (3) due to afforestation and restoration efforts, several species of non-native mangroves have been introduced beyond their natural range limits. Hence, from a global perspective, mangroves in China provide valuable opportunities to advance understanding of the effects of freezing and chilling temperatures on mangroves. Within the context of climate change, our findings provide a foundation for better understanding and preparing for mangrove species-specific responses to future changes in the duration and intensity of winter temperature extremes.

New approaches for sampling and modeling native and exotic plant species richness

USGS Publications Warehouse

Chong, G.W.; Reich, R.M.; Kalkhan, M.A.; Stohlgren, T.J.

2001-01-01

We demonstrate new multi-phase, multi-scale approaches for sampling and modeling native and exotic plant species to predict the spread of invasive species and aid in control efforts. Our test site is a 54,000-ha portion of Rocky Mountain National Park, Colorado, USA. This work is based on previous research wherein we developed vegetation sampling techniques to identify hot spots of diversity, important rare habitats, and locations of invasive plant species. Here we demonstrate statistical modeling tools to rapidly assess current patterns of native and exotic plant species to determine which habitats are most vulnerable to invasion by exotic species. We use stepwise multiple regression and modified residual kriging to estimate numbers of native species and exotic species, as well as probability of observing an exotic species in 30 × 30-m cells. Final models accounted for 62% of the variability observed in number of native species, 51% of the variability observed in number of exotic species, and 47% of the variability associated with observing an exotic species. Important independent variables used in developing the models include geographical location, elevation, slope, aspect, and Landsat TM bands 1-7. These models can direct resource managers to areas in need of further inventory, monitoring, and exotic species control efforts.

Changes in physicochemical properties and in vitro starch digestion of native and extruded maize flours subjected to branching enzyme and maltogenic α-amylase treatment.

PubMed

Román, Laura; Martínez, Mario M; Rosell, Cristina M; Gómez, Manuel

2017-08-01

Extrusion is an increasingly used type of processing which combined with enzymatic action could open extended possibilities for obtaining clean label modified flours. In this study, native and extruded maize flours were modified using branching enzyme (B) and a combination of branching enzyme and maltogenic α-amylase (BMA) in order to modulate their hydrolysis properties. The microstructure, pasting properties, in vitro starch hydrolysis and resistant starch content of the flours were investigated. Whereas BMA treatment led to greater number of holes on the granule surface in native samples, B and BMA extruded samples showed rougher surfaces with cavities. A reduction in the retrogradation trend was observed for B and BMA native flours, in opposition to the flat pasting profile of their extruded counterparts. The glucose release increased gradually for native flours as the time of reaction did, whereas for extruded flours a fast increase of glucose release was observed during the first minutes of reaction, and kept till the end, indicating a greater accessibility to their porous structure. These results suggested that, in enzymatically treated extruded samples, changes produced at larger hierarchical levels in their starch structure could have masked a slowdown in the starch digestion properties. Copyright © 2017 Elsevier B.V. All rights reserved.

Reading component skills of learners in adult basic education.

PubMed

MacArthur, Charles A; Konold, Timothy R; Glutting, Joseph J; Alamprese, Judith A

2010-01-01

The purposes of this study were to investigate the reliability and construct validity of measures of reading component skills with a sample of adult basic education (ABE) learners, including both native and nonnative English speakers, and to describe the performance of those learners on the measures. Investigation of measures of reading components is needed because available measures were neither developed for nor normed on ABE populations or with nonnative speakers of English. The study included 486 students, 334 born or educated in the United States (native) and 152 not born or educated in the United States (nonnative) but who spoke English well enough to participate in English reading classes. All students had scores on 11 measures covering five constructs: decoding, word recognition, spelling, fluency, and comprehension. Confirmatory factor analysis (CFA) was used to test three models: a two-factor model with print and meaning factors; a three-factor model that separated out a fluency factor; and a five-factor model based on the hypothesized constructs. The five-factor model fit best. In addition, the CFA model fit both native and nonnative populations equally well without modification, showing that the tests measure the same constructs with the same accuracy for both groups. Group comparisons found no difference between the native and nonnative samples on word recognition, but the native sample scored higher on fluency and comprehension and lower on decoding than did the nonnative sample. Students with self-reported learning disabilities scored lower on all reading components. Differences by age and gender were also analyzed.

Restoration treatments in urban park forests drive long-term changes in vegetation trajectories.

PubMed

Johnson, Lea R; Handel, Steven N

2016-04-01

Municipalities are turning to ecological restoration of urban forests as a measure to improve air quality, ameliorate urban heat island effects, improve storm water infiltration, and provide other social and ecological benefits. However, community dynamics following urban forest restoration treatments are poorly documented. This study examines the long-term effects of ecological restoration undertaken in New York City, New York, USA, to restore native forest in urban park natural areas invaded by woody non-native plants that are regional problems. In 2009 and 2010, we sampled vegetation in 30 invaded sites in three large public parks that were restored 1988-1993, and 30 sites in three large parks that were similarly invaded but had not been restored. Data from these matched plots reveal that the restoration treatment achieved its central goals. After 15-20 years, invasive species removal followed by native tree planting resulted in persistent structural and compositional shifts, significantly lower invasive species abundance, a more complex forest structure, and greater native tree recruitment. Together, these findings indicate that successional trajectories of vegetation dynamics have diverged between restored forests and invaded forests that were not restored. In addition, the data suggest that future composition of these urban forest patches will be novel assemblages. Restored and untreated sites shared a suite of shade-intolerant, quickly-growing tree species that colonize disturbed sites, indicating that restoration treatments created sites hospitable for germination and growth of species adapted to high light conditions and disturbed soils. These findings yield an urban perspective on the use of succession theory in ecological restoration. Models of ecological restoration developed in more pristine environments must be modified for use in cities. By anticipating both urban disturbances and ecological succession, management of urban forest patches can be adjusted to better predict and direct long-term outcomes. An urban approach to ecological restoration must use realistic, flexible targets to preserve and enhance urban biodiversity for both short-term benefits and long-term sustainability.

Bullying and Victimization among Native and Immigrant Adolescents in Norway: The Role of Proactive and Reactive Aggressiveness

ERIC Educational Resources Information Center

Fandrem, Hildegunn; Strohmeier, Dagmar; Roland, Erling

2009-01-01

This study compares levels of bullying others, victimization, and aggressiveness in native Norwegian and immigrant adolescents living in Norway and shows how bullying is related to proactive and reactive aggressiveness. The sample consists of 2,938 native Norwegians (1,521 girls, 1,417 boys) and 189 immigrant adolescents (97 girls, 92 boys) in…

Children's Play with a Forest Diorama as a Window into Ecological Cognition

ERIC Educational Resources Information Center

Washinawatok, Karen; Rasmussen, Connie; Bang, Megan; Medin, Douglas; Woodring, Jennifer; Waxman, Sandra; Marin, Ananda; Gurneau, Jasmine; Faber, Lori

2017-01-01

This study examined the play of 4-year-old children with a forest diorama that included toy representations of plants and animals. To examine the potential role of culture and expertise in diorama play, children from 3 samples participated: rural Native American, urban Native American, and urban non-Native American. Children's playtime was divided…

Association of Contextual Factors with Drug Use and Binge Drinking among White, Native American, and Mixed-Race Adolescents in the General Population

ERIC Educational Resources Information Center

Chen, Hsing-Jung; Balan, Sundari; Price, Rumi Kato

2012-01-01

Large-scale surveys have shown elevated risk for many indicators of substance abuse among Native American and Mixed-Race adolescents compared to other minority groups in the United States. This study examined underlying contextual factors associated with substance abuse among a nationally representative sample of White, Native American, and…

Early Childhood Education and Care for Native Hawaiian Children in Hawai'i: A Brief History

ERIC Educational Resources Information Center

Grace, Donna J.; Ku'ulei Serna, Alethea

2013-01-01

This study provides a brief overview of the history of early childhood education and care for Native Hawaiian children in Hawai'i. Data sources include a literature review, examination of archival documents, and interviews with a sample of Native Hawaiian parents and community members. We trace the emergence of outside-the-home early childhood…

Genetic and environmental influences on cold hardiness of native and introduced riparian trees

Treesearch

Jonathan M. Friedman; James E. Roelle; Brian S. Cade

2012-01-01

To explore latitudinal genetic variation in cold hardiness and leaf phenology, we planted a common garden of paired collections of native and introduced riparian trees sampled along a latitudinal gradient. The garden in Fort Collins, Colorado (latitude 40.6°N), included 681 native plains cottonwood (Populus deltoides subsp. monilifera) and introduced saltcedar (Tamarix...

A Study of Non-Native English Speakers' Academic Performance at Santa Ana College.

ERIC Educational Resources Information Center

Slark, Julie; Bateman, Harold

A study was conducted in 1980-81 at Santa Ana College (SAC) to collect data on the English communication skills of non-native English speakers and to determine if a relationship existed between these skills and student's educational success. A sample of 22 classes, with an enrollment of at least 50% non-native English speakers and representing a…

Patterns of hybridization of nonnative cutthroat trout and hatchery rainbow trout with native redband trout in the Boise River, Idaho

USGS Publications Warehouse

Neville, Helen M.; Dunham, Jason B.

2011-01-01

Hybridization is one of the greatest threats to native fishes. Threats from hybridization are particularly important for native trout species as stocking of nonnative trout has been widespread within the ranges of native species, thus increasing the potential for hybridization. While many studies have documented hybridization between native cutthroat trout Oncorhynchus clarkii and nonnative rainbow trout O. mykiss, fewer have focused on this issue in native rainbow trout despite widespread threats from introductions of both nonnative cutthroat trout and hatchery rainbow trout. Here, we describe the current genetic (i.e., hybridization) status of native redband trout O. mykiss gairdneri populations in the upper Boise River, Idaho. Interspecific hybridization was widespread (detected at 14 of the 41 sampled locations), but high levels of hybridization between nonnative cutthroat trout and redband trout were detected in only a few streams. Intraspecific hybridization was considerably more widespread (almost 40% of sampled locations), and several local populations of native redband trout have been almost completely replaced with hatchery coastal rainbow trout O. mykiss irideus; other populations exist as hybrid swarms, some are in the process of being actively invaded, and some are maintaining genetic characteristics of native populations. The persistence of some redband trout populations with high genetic integrity provides some opportunity to conserve native genomes, but our findings also highlight the complex decisions facing managers today. Effective management strategies in this system may include analysis of the specific attributes of each site and population to evaluate the relative risks posed by isolation versus maintaining connectivity, identifying potential sites for control or eradication of nonnative trout, and long-term monitoring of the genetic integrity of remaining redband trout populations to track changes in their status.

Native Mass Spectrometry: What is in the Name?

NASA Astrophysics Data System (ADS)

Leney, Aneika C.; Heck, Albert J. R.

2017-01-01

Electrospray ionization mass spectrometry (ESI-MS) is nowadays one of the cornerstones of biomolecular mass spectrometry and proteomics. Advances in sample preparation and mass analyzers have enabled researchers to extract much more information from biological samples than just the molecular weight. In particular, relevant for structural biology, noncovalent protein-protein and protein-ligand complexes can now also be analyzed by MS. For these types of analyses, assemblies need to be retained in their native quaternary state in the gas phase. This initial small niche of biomolecular mass spectrometry, nowadays often referred to as "native MS," has come to maturation over the last two decades, with dozens of laboratories using it to study mostly protein assemblies, but also DNA and RNA-protein assemblies, with the goal to define structure-function relationships. In this perspective, we describe the origins of and (re)define the term native MS, portraying in detail what we meant by "native MS," when the term was coined and also describing what it does (according to us) not entail. Additionally, we describe a few examples highlighting what native MS is, showing its successes to date while illustrating the wide scope this technology has in solving complex biological questions.

Mental health screening results for Native American and Euro-American youth in Oregon juvenile justice settings.

PubMed

Crofoot Graham, Thomas L; Corcoran, Kevin

2003-06-01

Mental health needs of Native American youth in the Oregon juvenile justice system are compared to those of Euro-American youth. The comparison is between 109 Euro-American youth and 22 Native American youth drawn from two samples of youth adjudicated to community service and incarcerated. The youth completed a mental health history and indices of mental health and health status. Native American youth are disproportionately represented in the Oregon juvenile justice system. Mental health profiles of Native American youth reflect problems at least as severe as those of Euro-American youth, and both Native American and Euro-American youth in the juvenile justice system had profiles different from those of youth not referred for clinical services. More Native American youth (42.5%) compared to Euro-American youth (27.5%) reported considering suicide in the past 12 months. Mental health screenings for both Native American and Euro-American youth are indicated.

Genome-wide single nucleotide polymorphism scan suggests adaptation to urbanization in an important pollinator, the red-tailed bumblebee (Bombus lapidarius L.).

PubMed

Theodorou, Panagiotis; Radzevičiūtė, Rita; Kahnt, Belinda; Soro, Antonella; Grosse, Ivo; Paxton, Robert J

2018-04-25

Urbanization is considered a global threat to biodiversity; the growth of cities results in an increase in impervious surfaces, soil and air pollution, fragmentation of natural vegetation and invasion of non-native species, along with numerous environmental changes, including the heat island phenomenon. The combination of these effects constitutes a challenge for both the survival and persistence of many native species, while also imposing altered selective regimes. Here, using 110 314 single nucleotide polymorphisms generated by restriction-site-associated DNA sequencing, we investigated the genome-wide effects of urbanization on putative neutral and adaptive genomic diversity in a major insect pollinator, Bombus lapidarius , collected from nine German cities and nine paired rural sites. Overall, genetic differentiation among sites was low and there was no obvious genome-wide genetic structuring, suggesting the absence of strong effects of urbanization on gene flow. We nevertheless identified several loci under directional selection, a subset of which was associated with urban land use, including the percentage of impervious surface surrounding each sampling site. Overall, our results provide evidence of local adaptation to urbanization in the face of gene flow in a highly mobile insect pollinator. © 2018 The Author(s).

Investigating Temporal Patterns of a Native Bee Community in a Remnant North American Bunchgrass Prairie using Blue Vane Traps

PubMed Central

Kimoto, Chiho; DeBano, Sandra J.; Thorp, Robbin W.; Rao, Sujaya; Stephen, William P.

2012-01-01

Native bees are important ecologically and economically because their role as pollinators fulfills a vital ecosystem service. Pollinators are declining due to various factors, including habitat degradation and destruction. Grasslands, an important habitat for native bees, are particularly vulnerable. One highly imperiled and understudied grassland type in the United States is the Pacific Northwest Bunchgrass Prairie. No studies have examined native bee communities in this prairie type. To fill this gap, the bee fauna of the Zumwalt Prairie, a large, relatively intact remnant of the Pacific Northwest Bunchgrass Prairie, was examined. Native bees were sampled during the summers of 2007 and 2008 in sixteen 40-ha study pastures on a plateau in northeastern Oregon, using a sampling method not previously used in grassland studies—blue vane traps. This grassland habitat contained an abundant and diverse community of native bees that experienced marked seasonal and inter-annual variation, which appears to be related to weather and plant phenology. Temporal variability evident over the entire study area was also reflected at the individual trap level, indicating a consistent response across the spatial scale of the study. These results demonstrate that temporal variability in bee communities can have important implications for long-term monitoring protocols. In addition, the blue vane trap method appears to be well-suited for studies of native bees in large expanses of grasslands or other open habitats, and may be a useful tool for monitoring native bee communities in these systems. PMID:23438086

Investigating temporal patterns of a native bee community in a remnant North American bunchgrass prairie using blue vane traps.

PubMed

Kimoto, Chiho; Debano, Sandra J; Thorp, Robbin W; Rao, Sujaya; Stephen, William P

2012-01-01

Native bees are important ecologically and economically because their role as pollinators fulfills a vital ecosystem service. Pollinators are declining due to various factors, including habitat degradation and destruction. Grasslands, an important habitat for native bees, are particularly vulnerable. One highly imperiled and understudied grassland type in the United States is the Pacific Northwest Bunchgrass Prairie. No studies have examined native bee communities in this prairie type. To fill this gap, the bee fauna of the Zumwalt Prairie, a large, relatively intact remnant of the Pacific Northwest Bunchgrass Prairie, was examined. Native bees were sampled during the summers of 2007 and 2008 in sixteen 40-ha study pastures on a plateau in northeastern Oregon, using a sampling method not previously used in grassland studies-blue vane traps. This grassland habitat contained an abundant and diverse community of native bees that experienced marked seasonal and inter-annual variation, which appears to be related to weather and plant phenology. Temporal variability evident over the entire study area was also reflected at the individual trap level, indicating a consistent response across the spatial scale of the study. These results demonstrate that temporal variability in bee communities can have important implications for long-term monitoring protocols. In addition, the blue vane trap method appears to be well-suited for studies of native bees in large expanses of grasslands or other open habitats, and may be a useful tool for monitoring native bee communities in these systems.

Household reporting of childhood respiratory health and air pollution in rural Alaska Native communities.

PubMed

Ware, Desirae N; Lewis, Johnnye; Hopkins, Scarlett; Boyer, Bert; Montrose, Luke; Noonan, Curtis W; Semmens, Erin O; Ward, Tony J

2014-01-01

Air pollution is an important contributor to respiratory disease in children. To examine associations between household reporting of childhood respiratory conditions and household characteristics related to air pollution in Alaska Native communities. In-home surveys were administered in 2 rural regions of Alaska. The 12-month prevalence of respiratory conditions was summarized by region and age. Odds ratios (ORs) were calculated to describe associations between respiratory health and household and air quality characteristics. Household-reported respiratory health data were collected for 561 children in 328 households. In 1 region, 33.6% of children aged <5 years had a recent history of pneumonia and/or bronchitis. Children with these conditions were 2 times more likely to live in a wood-heated home, but these findings were imprecise. Resident concern with mould was associated with elevated prevalence of respiratory infections in children (ORs 1.6-2.5), while reported wheezing was associated with 1 or more smokers living in the household. Reported asthma in 1 region (7.6%) was lower than national prevalence estimates. Findings suggest that there may be preventable exposures, including wood smoke and mould that affect childhood respiratory disease in these rural areas. Additional research is needed to quantify particulate matter 2.5 microns in aerodynamic diameter or less and mould exposures in these communities, and to objectively evaluate childhood respiratory health.

Setting limits: Using air pollution thresholds to protect and restore US ecosystems

USGS Publications Warehouse

Fenn, Mark E.; Lambert, Kathleen F.; Blett, Tamara F.; Burns, Douglas A.; Pardo, Linda H.; Lovett, Gary M.; Haeuber, Richard A.; Evers, David C.; Driscoll, Charles T.; Jeffries, Dean S.

2011-01-01

More than four decades of research provide unequivocal evidence that sulfur, nitrogen, and mercury pollution have altered, and will continue to alter, our nation's lands and waters. The emission and deposition of air pollutants harm native plants and animals, degrade water quality, affect forest productivity, and are damaging to human health. Many air quality policies limit emissions at the source but these control measures do not always consider ecosystem impacts. Air pollution thresholds at which ecological effects are observed, such as critical loads, are effective tools for assessing the impacts of air pollution on essential ecosystem services and for informing public policy. U.S. ecosystems can be more effectively protected and restored by using a combination of emissions-based approaches and science-based thresholds of ecosystem damage.

Impact of native plants on bird and butterfly biodiversity in suburban landscapes.

PubMed

Burghardt, Karin T; Tallamy, Douglas W; Gregory Shriver, W

2009-02-01

Managed landscapes in which non-native ornamental plants are favored over native vegetation now dominate the United States, particularly east of the Mississippi River. We measured how landscaping with native plants affects the avian and lepidopteran communities on 6 pairs of suburban properties in southeastern Pennsylvania. One property in each pair was landscaped entirely with native plants and the other exhibited a more conventional suburban mixture of plants--a native canopy with non-native groundcover and shrubs. Vegetation sampling confirmed that total plant cover and plant diversity did not differ between treatments, but non-native plant cover was greater on the conventional sites and native plant cover was greater on the native sites. Several avian (abundance, species richness, biomass, and breeding-bird abundance) and larval lepidopteran (abundance and species richness) community parameters were measured from June 2006 to August 2006. Native properties supported significantly more caterpillars and caterpillar species and significantly greater bird abundance, diversity, species richness, biomass, and breeding pairs of native species. Of particular importance is that bird species of regional conservation concern were 8 times more abundant and significantly more diverse on native properties. In our study area, native landscaping positively influenced the avian and lepidopteran carrying capacity of suburbia and provided a mechanism for reducing biodiversity losses in human-dominated landscapes.

The Cognitive Validity of Child English Language Tests: What Young Language Learners and Their Native-Speaking Peers Can Reveal

ERIC Educational Resources Information Center

Winke, Paula; Lee, Shinhye; Ahn, Jieun Irene; Choi, Ina; Cui, Yaqiong; Yoon, Hyung-Jo

2018-01-01

This study investigated the cognitive validity of two child English language tests. Some teachers maintain that these types of tests may be cognitively invalid because native-English-speaking children would not do well on them (Winke, 2011). So the researchers had native speakers and learners of English aged 7 to 9 take sample versions of two…

Perception and analysis of Spanish accents in English speech

NASA Astrophysics Data System (ADS)

Chism, Cori; Lass, Norman

2002-05-01

The purpose of the present study was to determine what relates most closely to the degree of perceived foreign accent in the English speech of native Spanish speakers: intonation, vowel length, stress, voice onset time (VOT), or segmental accuracy. Nineteen native English speaking listeners rated speech samples from 7 native English speakers and 15 native Spanish speakers for comprehensibility and degree of foreign accent. The speech samples were analyzed spectrographically and perceptually to obtain numerical values for each variable. Correlation coefficients were computed to determine the relationship beween these values and the average foreign accent scores. Results showed that the average foreign accent scores were statistically significantly correlated with three variables: the length of stressed vowels (r=-0.48, p=0.05), voice onset time (r =-0.62, p=0.01), and segmental accuracy (r=0.92, p=0.001). Implications of these findings and suggestions for future research are discussed.

Trace elements in native and transplanted Fontinalis antipyretica and Platyhypnidium riparioides from rivers polluted by uranium mining.

PubMed

Kosior, Grzegorz; Steinnes, Eiliv; Samecka-Cymerman, Aleksandra; Lierhagen, Syverin; Kolon, Krzysztof; Dołhańczuk-Śródka, Agnieszka; Ziembik, Zbigniew

2017-03-01

The past uranium/polymetallic mining activities in the Sudety (SW Poland) left abandoned mines, pits, and dumps of waste rocks with trace elements and radionuclides which may erode or leach out and create a potential risk for the aquatic ecosystem, among others. In the present work four rivers affected by effluents from such mines were selected to evaluate the application of aquatic mosses for the bioindication of 56 elements. Naturally growing F. antipyretica and P. riparioides were compared with transplanted samples of the same species. The results demonstrate serious pollution of the examined rivers, especially with As, Ba, Fe, Mn, Pb, Ti, U and Zn, reaching extremely high concentrations in native moss samples. In the most polluted rivers native F. antipyretica and P. riparioides samples showed significantly higher concentrations of As, Ba, Cu, Fe, La, Nd, Ni, Pb, U and Zn than corresponding transplanted samples, whereas at less polluted sites a reverse situation was sometimes observed. Transplanted moss moved from clean to extremely polluted rivers probably protects itself against the accumulation of toxic elements by reducing their uptake. Selection of native or transplanted F. antipyretica and P. riparioides depended on the pollution load. Copyright © 2016. Published by Elsevier Ltd.

Effect of endophytic Bacillus cereus ERBP inoculation into non-native host: Potentials and challenges for airborne formaldehyde removal.

PubMed

Khaksar, Gholamreza; Treesubsuntorn, Chairat; Thiravetyan, Paitip

2016-10-01

Phytoremediation could be a cost-effective, environmentally friendly approach for the treatment of indoor air. However, some drawbacks still dispute the expediency of phytotechnology. Our objectives were to investigate the competency of plant growth-promoting (PGP) endophytic Bacillus cereus ERBP (endophyte root blue pea), isolated from the root of Clitoria ternatea, to colonize and stabilize within Zamioculcas zamiifolia and Euphorbia milii as non-native hosts without causing any disease or stress symptoms. Moreover, the impact of B. cereus ERBP on the natural shoot endophytic community and for the airborne formaldehyde removal capability of non-native hosts was assessed. Non-native Z. zamiifolia was effectively inoculated with B. cereus ERBP through soil as the most efficient method of endophyte inoculation. Denaturing gradient gel electrophoresis profiling of the shoot endophytic community verified the colonization and stability of B. cereus ERBP within its non-native host during a 20-d fumigation period without interfering with the natural shoot endophytic diversity of Z. zamiifolia. B. cereus ERBP conferred full protection to its non-native host against formaldehyde phytotoxicity and enhanced airborne formaldehyde removal of Z. zamiifolia whereas non-inoculated plants suffered from formaldehyde phytotoxicity because their natural shoot endophytic community was detrimentally affected by formaldehyde. In contrast, B. cereus ERBP inoculation into non-native E. milii deteriorated airborne formaldehyde removal of the non-native host (compared to a non-inoculated one) as B. cereus ERBP interfered with natural shoot endophytic community of E. milii, which caused stress symptoms and stimulated ethylene biosynthesis. Non-native host inoculation with PGP B. cereus ERBP could bear potentials and challenges for airborne formaldehyde removal. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

Thermal Wadis in Support of Lunar Exploration: Concept Development and Utilization

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matyas, Josef; Wegeng, Robert S.; Burgess, Jeremy M.

2009-10-12

Thermal wadis, engineered sources of heat, can be used to extend the life of lunar rovers by keeping them warm during the extreme cold of the lunar night. Thermal wadis can be manufactured by sintering or melting lunar regolith into a solid mass with more than two orders of magnitude higher thermal diffusivities compared to native regolith dust. Small simulant samples were sintered and melted in the electrical furnaces at different temperatures, different heating and cooling rates, various soaking times, under air, or in an argon atmosphere. The samples were analyzed with scanning electron microscopy and energy dispersive spectroscopy, X-raymore » diffraction, a laser-flash thermal diffusivity system, and the millimeter-wave system. The melting temperature of JSC-1AF simulant was ~50°C lower in an Ar atmosphere compared to an air atmosphere. The flow of Ar during sintering and melting resulted in a small mass loss of 0.04 to 0.1 wt% because of the volatization of alkali compounds. In contrast, the samples that were heat-treated under an air atmosphere gained from 0.012 to 0.31 wt% of the total weight. A significantly higher number of cavities were formed inside the samples melted under an argon atmosphere, possibly because of the evolution of oxygen bubbles from iron redox reactions. The calculated emissivity of JSCf-1AF simulant did not change much with temperature, varying between 0.8 and 0.95 at temperatures from 100 to 1200°C. The thermal diffusivities of raw regolith that was compressed under a pressure of 9 metric tons ranged from 0.0013 to 00011 in the 27 to 390°C temperature range. The thermal diffusivities of sintered and melted JSC-1AF simulant varied from 0.0028 to 0.0072 cm2/s with the maximum thermal diffusivities observed in the samples that were heated up 5°C/min from RT to 1150°C under Ar or air. These thermal diffusivities are high enough for the rovers to survive the extreme cold of the Moon at the rim of the Shackleton Crater and allow them to operate for months (or years) as opposed to weeks on the lunar surface. Future investigations will be focused on a system that can efficiently construct a thermal wadi from the lunar mare regolith. Solar heating, microwave heating, or electrical resistance melting are considered.« less

Victimization and Violent Offending: An Assessment of the Victim-Offender Overlap Among Native American Adolescents and Young Adults

PubMed Central

Reingle, Jennifer M.; Maldonado-Molina, Mildred M.

2013-01-01

The purpose of this article is to evaluate the victim–offender overlap among a nationally representative sample of Native American adolescents and young adults. Data for this study were obtained from 338 Native American youth who participated in the National Longitudinal Study of Adolescent Health (Add Health) Waves I-IV. Group-based trajectory modeling was used to estimate trajectories of violence and victimization separately. Bivariate tests were used to assess the overlap between victimization and violent trajectory groups. Multinomial regression procedures were used to assess the predictors of victimization, offending, and the overlap category of both victimization and offending. Three trajectory groups were found for violence (nonviolent, escalators, and desistors) and victimization (nonvictim, decreasing victimization, and increasing victimization). We found substantial evidence of an overlap between victimization and offending among Native Americans, as 27.5% of the sample reported both victimization and offending. Those in the overlap group had greater number of risk factors present at baseline. These results suggest that the victim–offender overlap is present in Native American adolescents. Explanations and implications are discussed. PMID:24078778

Assessment of elder mistreatment in two American Indian samples: psychometric characteristics of the HS-EAST and the Native Elder Life-Financial Exploitation and -Neglect measures.

PubMed

Jervis, Lori L; Fickenscher, Alexandra; Beals, Janette

2014-04-01

Although elder mistreatment among ethnic minorities is increasingly gaining attention, our empirical knowledge of this phenomenon among American Indians remains quite limited, especially with respect to measurement. The Shielding American Indian Elders (SAIE) Project used a collaborative approach to explore culturally informed measurement of elder mistreatment in two American Indian elder samples (a Northern Plains reservation and a South Central metropolitan area). The project sought to investigate the performance characteristics of the commonly used Hwalek-Sengstock Elder Abuse Screening Test (HS-EAST), as well as to examine the psychometric properties of a new measure developed to capture culturally salient aspects of mistreatment in American Indian contexts--the Native Elder Life Scale (NELS). Using methods and samples comparable to those in the literature, the HS-EAST performed adequately in these Native samples. The NELS also shows promise for use with this population and assesses different aspects of elder mistreatment than does the HS-EAST.

Energy Landscape of All-Atom Protein-Protein Interactions Revealed by Multiscale Enhanced Sampling

PubMed Central

Moritsugu, Kei; Terada, Tohru; Kidera, Akinori

2014-01-01

Protein-protein interactions are regulated by a subtle balance of complicated atomic interactions and solvation at the interface. To understand such an elusive phenomenon, it is necessary to thoroughly survey the large configurational space from the stable complex structure to the dissociated states using the all-atom model in explicit solvent and to delineate the energy landscape of protein-protein interactions. In this study, we carried out a multiscale enhanced sampling (MSES) simulation of the formation of a barnase-barstar complex, which is a protein complex characterized by an extraordinary tight and fast binding, to determine the energy landscape of atomistic protein-protein interactions. The MSES adopts a multicopy and multiscale scheme to enable for the enhanced sampling of the all-atom model of large proteins including explicit solvent. During the 100-ns MSES simulation of the barnase-barstar system, we observed the association-dissociation processes of the atomistic protein complex in solution several times, which contained not only the native complex structure but also fully non-native configurations. The sampled distributions suggest that a large variety of non-native states went downhill to the stable complex structure, like a fast folding on a funnel-like potential. This funnel landscape is attributed to dominant configurations in the early stage of the association process characterized by near-native orientations, which will accelerate the native inter-molecular interactions. These configurations are guided mostly by the shape complementarity between barnase and barstar, and lead to the fast formation of the final complex structure along the downhill energy landscape. PMID:25340714

Population Structure, Diversity and Reproductive Mode of the Grape Phylloxera (Daktulosphaira vitifoliae) across Its Native Range

PubMed Central

Walker, M. Andrew

2017-01-01

Grape Phylloxera, Daktulosphaira vitifoliae, is a gall-forming insect that feeds on the leaves and roots of many Vitis species. The roots of the cultivated V. vinifera cultivars and hybrids are highly susceptible to grape phylloxera feeding damage. The native range of this insect covers most of North America, and it is particularly abundant in the eastern and central United States. Phylloxera was introduced from North America to almost all grape-growing regions across five of the temperate zone continents. It devastated vineyards in each of these regions causing large-scale disruptions to grape growers, wine makers and national economies. In order to understand the population diversity of grape phylloxera in its native range, more than 500 samples from 19 States and 34 samples from the introduced range (northern California, Europe and South America) were genotyped with 32 simple sequence repeat markers. STRUCTURE, a model based clustering method identified five populations within these samples. The five populations were confirmed by a neighbor-joining tree and principal coordinate analysis (PCoA). These populations were distinguished by their Vitis species hosts and their geographic locations. Samples collected from California, Europe and South America traced back to phylloxera sampled in the northeastern United States on V. riparia, with some influence from phylloxera collected along the Atlantic Coast and Central Plains on V. vulpina. Reproductive statistics conclusively confirmed that sexual reproduction is common in the native range and is combined with cyclical parthenogenesis. Native grape phylloxera populations were identified to be under Hardy-Weinberg equilibrium. The identification of admixed samples between many of these populations indicates that shared environments facilitate sexual reproduction between different host associated populations to create new genotypes of phylloxera. This study also found that assortative mating might occur across the sympatric range of the V. vulpina west and V. cinerea populations. PMID:28125736

Environmental Assessment for Enhanced Use Lease of U.S. Air Force Lands to the City of North Las Vegas for Construction and Operation of a Water Reclamation Facility, Nellis Air Force Base, Nevada

DTIC Science & Technology

2008-01-01

3.1.14 Soundscape ........................................................................................................ 13 3.1.15 Visual Resources...Health and Safety – X Socioeconomic X – Indian Trust Assets – X Native American Religious Concerns – X Soundscape – X Visual Resources – X Odor – X...3.1.14 Soundscape Detailed consideration of the soundscape was not deemed necessary in this EA. Because the proposed Water Reclamation Facility is

Sports activities in preschool children differed between those born to immigrants and native Italians.

PubMed

Zaccagni, Luciana; Toselli, Stefania; Celenza, Francesca; Albertini, Augusta; Gualdi-Russo, Emanuela

2017-07-01

Despite the health benefits of physical activity in early childhood, little is known about sports practices in preschool children with different ethnic origins. The aim of this study was to investigate the sport activity patterns in native and immigrant children in northern Italy. The influence of some child and family determinants on the child's practice of club-organised sport was analysed to plan interventions. The study group comprised 2682 preschool children (49.5% girls) aged 5.9 ± 0.3, 2396 fathers and 2478 mothers. All the children had their height and weight measured and their parents completed a self-administered questionnaire on their child's sports participation and family characteristics. Sports activities were significantly more frequent in native Italian girls than in native Italian boys and immigrant girls. Multiple linear regression analysis showed that the weekly amount of club-organised sport in preschool children was related to the sex and migrant status in the whole sample, to paternal educational level and occupation in the native-born sample and to paternal body mass index, offspring and paternal occupation in the immigrant group. This study highlighted the need to develop specific interventions for native and immigrant preschool children to promote a healthy lifestyle. ©2017 Foundation Acta Paediatrica. Published by John Wiley & Sons Ltd.

A Free-Energy Approach for All-Atom Protein Simulation

PubMed Central

Verma, Abhinav; Wenzel, Wolfgang

2009-01-01

All-atom free-energy methods offer a promising alternative to kinetic molecular mechanics simulations of protein folding and association. Here we report an accurate, transferable all-atom biophysical force field (PFF02) that stabilizes the native conformation of a wide range of proteins as the global optimum of the free-energy landscape. For 32 proteins of the ROSETTA decoy set and six proteins that we have previously folded with PFF01, we find near-native conformations with an average backbone RMSD of 2.14 Å to the native conformation and an average Z-score of −3.46 to the corresponding decoy set. We used nonequilibrium sampling techniques starting from completely extended conformations to exhaustively sample the energy surface of three nonhomologous hairpin-peptides, a three-stranded β-sheet, the all-helical 40 amino-acid HIV accessory protein, and a zinc-finger ββα motif, and find near-native conformations for the minimal energy for each protein. Using a massively parallel evolutionary algorithm, we also obtain a near-native low-energy conformation for the 54 amino-acid engrailed homeodomain. Our force field thus stabilized near-native conformations for a total of 20 proteins of all structure classes with an average RMSD of only 3.06 Å to their respective experimental conformations. PMID:19413955

Does Media Use Result in More Active Communicators? Differences Between Native Dutch and Turkish-Dutch Patients in Information-Seeking Behavior and Participation During Consultations With General Practitioners.

PubMed

Schinkel, Sanne; Van Weert, Julia C M; Kester, Jorrit A M; Smit, Edith G; Schouten, Barbara C

2015-08-01

This study investigates differences between native Dutch and Turkish-Dutch patients with respect to media usage before and patient participation during medical consultations with general practitioners. In addition, the authors assessed the relation between patient participation and communication outcomes. The patients were recruited in the waiting rooms of general practitioners, and 191 patients (117 native Dutch, 74 Turkish-Dutch) completed pre- and postconsultation questionnaires. Of this sample, 120 patients (62.8%; 82 native Dutch, 38 Turkish-Dutch) agreed to have their consultations recorded to measure patient participation. Compared with Turkish-Dutch patients of similar educational levels, results showed that native Dutch patients used different media to search for information, participated to a greater extent during their consultations and were more responsive to their general practitioner. With respect to the Turkish-Dutch patients, media usage was related to increased patient participation, which was correlated with having fewer unfulfilled information needs; however, these relations were not found in the native Dutch patient sample. In conclusion, interventions that enhance participation among ethnic minority patients will better fulfill informational needs when such interventions stimulate information-seeking behavior in that group before a medical consultation.

A free-energy approach for all-atom protein simulation.

PubMed

Verma, Abhinav; Wenzel, Wolfgang

2009-05-06

All-atom free-energy methods offer a promising alternative to kinetic molecular mechanics simulations of protein folding and association. Here we report an accurate, transferable all-atom biophysical force field (PFF02) that stabilizes the native conformation of a wide range of proteins as the global optimum of the free-energy landscape. For 32 proteins of the ROSETTA decoy set and six proteins that we have previously folded with PFF01, we find near-native conformations with an average backbone RMSD of 2.14 A to the native conformation and an average Z-score of -3.46 to the corresponding decoy set. We used nonequilibrium sampling techniques starting from completely extended conformations to exhaustively sample the energy surface of three nonhomologous hairpin-peptides, a three-stranded beta-sheet, the all-helical 40 amino-acid HIV accessory protein, and a zinc-finger beta beta alpha motif, and find near-native conformations for the minimal energy for each protein. Using a massively parallel evolutionary algorithm, we also obtain a near-native low-energy conformation for the 54 amino-acid engrailed homeodomain. Our force field thus stabilized near-native conformations for a total of 20 proteins of all structure classes with an average RMSD of only 3.06 A to their respective experimental conformations.

Reduced reactivity to air on HF-treated YBa2Cu3O(7-x)surfaces

NASA Technical Reports Server (NTRS)

Vasquez, R. P.; Hunt, B. D.; Foote, M. C.

1989-01-01

Treatment of YBa2Cu3O(7-x) films with a nonaqueous solution of HF in absolute ethanol results in the formation of an oxyfluoride with relative Y:Ba:Cu concentrations of 1:4:3 on the surface, as determined by X-ray photoelectron spectroscopy. The passivation properties of chemically treated films were tested by monitoring the growth of the high binding energy O 1s peak, associated with nonsuperconducting surface species, as a function of air exposure time, for both HF-treated and untreated films. The native oxyfluoride is shown to reduce the reactivity of the superconductor to air.

Mathematics beliefs and achievement of a national sample of Native American students: results from the Trends in International Mathematics and Science Study (TIMSS) 2003 United States assessment.

PubMed

House, J Daniel

2009-04-01

Recent mathematics assessment findings indicate that Native American students tend to score below students of the ethnic majority. Findings suggest that students' beliefs about mathematics are significantly related to achievement outcomes. This study examined relations between self-beliefs and mathematics achievement for a national sample of 130 Grade 8 Native American students from the Trends in International Mathematics and Science Study (TIMSS) 2003 United States sample of (M age = 14.2 yr., SD = 0.5). Multiple regression indicated several significant relations of mathematics beliefs with achievement and accounted for 26.7% of the variance in test scores. Students who earned high test scores tended to hold more positive beliefs about their ability to learn mathematics quickly, while students who earned low scores expressed negative beliefs about their ability to learn new mathematics topics.

Analyses of native water, core material, and elutriate samples collected from the Atchafalaya River and Atchafalaya Bay

USGS Publications Warehouse

Demas, Charles R.

1977-01-01

During October and November 1976 the U.S. Geological Survey, in cooperation with the U.S. Army Corps of Engineers, collected native water and core material from 14 sites along the Atchafalya River in Louisiana (from the head of Whiskey Bay Pilot Channel to American Pass) and 5 sites in Atchafalya Bay for evaluation of possible environmental effects of a proposed channel-enlargement project. Core material from all river sites and one bay site was collected to a depth of 50 feet (15 meters). At the remaining bay sites, samples were collected to a depth of less than 6 inches (15 centimeters) using a pipe dredge. Core material and native water were analyzed (separately and as elutriate samples prepared from mixtures) for selected metals, nutrients, organic compounds, and physical characteristics. No interpretation of the data is given. (Woodard-USGS)

A study on high NA and evanescent imaging with polarized illumination

NASA Astrophysics Data System (ADS)

Yang, Seung-Hune

Simulation techniques are developed for high NA polarized microscopy with Babinet's principle, partial coherence and vector diffraction for non-periodic geometries. A mathematical model for the Babinet approach is developed and interpreted. Simulation results of the Babinet's principle approach are compared with those of Rigorous Coupled Wave Theory (RCWT) for periodic structures to investigate the accuracy of this approach and its limitations. A microscope system using a special solid immersion lens (SIL) is introduced to image Blu-Ray (BD) optical disc samples without removing the protective cover layer. Aberration caused by the cover layer is minimized with a truncated SIL. Sub-surface imaging simulation is achieved by RCWT, partial coherence, vector diffraction and Babinet's Principle. Simulated results are compared with experimental images and atomic force microscopy (AFM) measurement. A technique for obtaining native and induced using a significant amount of evanescent energy is described for a solid immersion lens (SIL) microscope. Characteristics of native and induced polarization images for different object structures and materials are studied in detail. Experiments are conducted with a NA = 1.48 at lambda = 550nm microscope. Near-field images are simulated and analyzed with an RCWT approach. Contrast curve versus object spatial frequency calculations are compared with experimental measurements. Dependencies of contrast versus source polarization angles and air gap for native and induced polarization image profiles are evaluated. By using the relationship between induced polarization and topographical structure, an induced polarization image of an alternating phase shift mask (PSM) is converted into a topographical image, which shows very good agreement with AFM measurement. Images of other material structures include a dielectric grating, chrome-on-glass grating, silicon CPU structure, BD-R and BD-ROM.

Variation in genetic admixture and population structure among Latinos: the Los Angeles Latino eye study (LALES)

PubMed Central

2009-01-01

Background Population structure and admixture have strong confounding effects on genetic association studies. Discordant frequencies for age-related macular degeneration (AMD) risk alleles and for AMD incidence and prevalence rates are reported across different ethnic groups. We examined the genomic ancestry characterizing 538 Latinos drawn from the Los Angeles Latino Eye Study [LALES] as part of an ongoing AMD-association study. To help assess the degree of Native American ancestry inherited by Latino populations we sampled 25 Mayans and 5 Mexican Indians collected through Coriell's Institute. Levels of European, Asian, and African descent in Latinos were inferred through the USC Multiethnic Panel (USC MEP), formed from a sample from the Multiethnic Cohort (MEC) study, the Yoruba African samples from HapMap II, the Singapore Chinese Health Study, and a prospective cohort from Shanghai, China. A total of 233 ancestry informative markers were genotyped for 538 LALES Latinos, 30 Native Americans, and 355 USC MEP individuals (African Americans, Japanese, Chinese, European Americans, Latinos, and Native Hawaiians). Sensitivity of ancestry estimates to relative sample size was considered. Results We detected strong evidence for recent population admixture in LALES Latinos. Gradients of increasing Native American background and of correspondingly decreasing European ancestry were observed as a function of birth origin from North to South. The strongest excess of homozygosity, a reflection of recent population admixture, was observed in non-US born Latinos that recently populated the US. A set of 42 SNPs especially informative for distinguishing between Native Americans and Europeans were identified. Conclusion These findings reflect the historic migration patterns of Native Americans and suggest that while the 'Latino' label is used to categorize the entire population, there exists a strong degree of heterogeneity within that population, and that it will be important to assess this heterogeneity within future association studies on Latino populations. Our study raises awareness of the diversity within "Latinos" and the necessity to assess appropriate risk and treatment management. PMID:19903357

Variation in genetic admixture and population structure among Latinos: the Los Angeles Latino eye study (LALES).

PubMed

Shtir, Corina J; Marjoram, Paul; Azen, Stanley; Conti, David V; Le Marchand, Loic; Haiman, Christopher A; Varma, Rohit

2009-11-10

Population structure and admixture have strong confounding effects on genetic association studies. Discordant frequencies for age-related macular degeneration (AMD) risk alleles and for AMD incidence and prevalence rates are reported across different ethnic groups. We examined the genomic ancestry characterizing 538 Latinos drawn from the Los Angeles Latino Eye Study [LALES] as part of an ongoing AMD-association study. To help assess the degree of Native American ancestry inherited by Latino populations we sampled 25 Mayans and 5 Mexican Indians collected through Coriell's Institute. Levels of European, Asian, and African descent in Latinos were inferred through the USC Multiethnic Panel (USC MEP), formed from a sample from the Multiethnic Cohort (MEC) study, the Yoruba African samples from HapMap II, the Singapore Chinese Health Study, and a prospective cohort from Shanghai, China. A total of 233 ancestry informative markers were genotyped for 538 LALES Latinos, 30 Native Americans, and 355 USC MEP individuals (African Americans, Japanese, Chinese, European Americans, Latinos, and Native Hawaiians). Sensitivity of ancestry estimates to relative sample size was considered. We detected strong evidence for recent population admixture in LALES Latinos. Gradients of increasing Native American background and of correspondingly decreasing European ancestry were observed as a function of birth origin from North to South. The strongest excess of homozygosity, a reflection of recent population admixture, was observed in non-US born Latinos that recently populated the US. A set of 42 SNPs especially informative for distinguishing between Native Americans and Europeans were identified. These findings reflect the historic migration patterns of Native Americans and suggest that while the 'Latino' label is used to categorize the entire population, there exists a strong degree of heterogeneity within that population, and that it will be important to assess this heterogeneity within future association studies on Latino populations. Our study raises awareness of the diversity within "Latinos" and the necessity to assess appropriate risk and treatment management.

Properties of Soil Pore Space Regulate Pathways of Plant Residue Decomposition and Community Structure of Associated Bacteria

PubMed Central

Negassa, Wakene C.; Guber, Andrey K.; Kravchenko, Alexandra N.; Marsh, Terence L.; Hildebrandt, Britton; Rivers, Mark L.

2015-01-01

Physical protection of soil carbon (C) is one of the important components of C storage. However, its exact mechanisms are still not sufficiently lucid. The goal of this study was to explore the influence of soil structure, that is, soil pore spatial arrangements, with and without presence of plant residue on (i) decomposition of added plant residue, (ii) CO2 emission from soil, and (iii) structure of soil bacterial communities. The study consisted of several soil incubation experiments with samples of contrasting pore characteristics with/without plant residue, accompanied by X-ray micro-tomographic analyses of soil pores and by microbial community analysis of amplified 16S–18S rRNA genes via pyrosequencing. We observed that in the samples with substantial presence of air-filled well-connected large (>30 µm) pores, 75–80% of the added plant residue was decomposed, cumulative CO2 emission constituted 1,200 µm C g-1 soil, and movement of C from decomposing plant residue into adjacent soil was insignificant. In the samples with greater abundance of water-filled small pores, 60% of the added plant residue was decomposed, cumulative CO2 emission constituted 2,000 µm C g-1 soil, and the movement of residue C into adjacent soil was substantial. In the absence of plant residue the influence of pore characteristics on CO2 emission, that is on decomposition of the native soil organic C, was negligible. The microbial communities on the plant residue in the samples with large pores had more microbial groups known to be cellulose decomposers, that is, Bacteroidetes, Proteobacteria, Actinobacteria, and Firmicutes, while a number of oligotrophic Acidobacteria groups were more abundant on the plant residue from the samples with small pores. This study provides the first experimental evidence that characteristics of soil pores and their air/water flow status determine the phylogenetic composition of the local microbial community and directions and magnitudes of soil C decomposition processes. PMID:25909444

Properties of soil pore space regulate pathways of plant residue decomposition and community structure of associated bacteria

DOE PAGES

Negassa, Wakene C.; Guber, Andrey K.; Kravchenko, Alexandra N.; ...

2015-07-01

Physical protection of soil carbon (C) is one of the important components of C storage. However, its exact mechanisms are still not sufficiently lucid. The goal of this study was to explore the influence of soil structure, that is, soil pore spatial arrangements, with and without presence of plant residue on (i) decomposition of added plant residue, (ii) CO₂ emission from soil, and (iii) structure of soil bacterial communities. The study consisted of several soil incubation experiments with samples of contrasting pore characteristics with/without plant residue, accompanied by X-ray micro-tomographic analyses of soil pores and by microbial community analysis ofmore » amplified 16S–18S rRNA genes via pyrosequencing. We observed that in the samples with substantial presence of air-filled well-connected large (>30 µm) pores, 75–80% of the added plant residue was decomposed, cumulative CO₂ emission constituted 1,200 µm C g⁻¹ soil, and movement of C from decomposing plant residue into adjacent soil was insignificant. In the samples with greater abundance of water-filled small pores, 60% of the added plant residue was decomposed, cumulative CO₂ emission constituted 2,000 µm C g⁻¹ soil, and the movement of residue C into adjacent soil was substantial. In the absence of plant residue the influence of pore characteristics on CO₂ emission, that is on decomposition of the native soil organic C, was negligible. The microbial communities on the plant residue in the samples with large pores had more microbial groups known to be cellulose decomposers, that is, Bacteroidetes, Proteobacteria, Actinobacteria, and Firmicutes, while a number of oligotrophic Acidobacteria groups were more abundant on the plant residue from the samples with small pores. This study provides the first experimental evidence that characteristics of soil pores and their air/water flow status determine the phylogenetic composition of the local microbial community and directions and magnitudes of soil C decomposition processes.« less

Properties of soil pore space regulate pathways of plant residue decomposition and community structure of associated bacteria.

PubMed

Negassa, Wakene C; Guber, Andrey K; Kravchenko, Alexandra N; Marsh, Terence L; Hildebrandt, Britton; Rivers, Mark L

2015-01-01

Physical protection of soil carbon (C) is one of the important components of C storage. However, its exact mechanisms are still not sufficiently lucid. The goal of this study was to explore the influence of soil structure, that is, soil pore spatial arrangements, with and without presence of plant residue on (i) decomposition of added plant residue, (ii) CO2 emission from soil, and (iii) structure of soil bacterial communities. The study consisted of several soil incubation experiments with samples of contrasting pore characteristics with/without plant residue, accompanied by X-ray micro-tomographic analyses of soil pores and by microbial community analysis of amplified 16S-18S rRNA genes via pyrosequencing. We observed that in the samples with substantial presence of air-filled well-connected large (>30 µm) pores, 75-80% of the added plant residue was decomposed, cumulative CO2 emission constituted 1,200 µm C g(-1) soil, and movement of C from decomposing plant residue into adjacent soil was insignificant. In the samples with greater abundance of water-filled small pores, 60% of the added plant residue was decomposed, cumulative CO2 emission constituted 2,000 µm C g(-1) soil, and the movement of residue C into adjacent soil was substantial. In the absence of plant residue the influence of pore characteristics on CO2 emission, that is on decomposition of the native soil organic C, was negligible. The microbial communities on the plant residue in the samples with large pores had more microbial groups known to be cellulose decomposers, that is, Bacteroidetes, Proteobacteria, Actinobacteria, and Firmicutes, while a number of oligotrophic Acidobacteria groups were more abundant on the plant residue from the samples with small pores. This study provides the first experimental evidence that characteristics of soil pores and their air/water flow status determine the phylogenetic composition of the local microbial community and directions and magnitudes of soil C decomposition processes.

Properties of soil pore space regulate pathways of plant residue decomposition and community structure of associated bacteria

DOE Office of Scientific and Technical Information (OSTI.GOV)

Negassa, Wakene C.; Guber, Andrey K.; Kravchenko, Alexandra N.

Physical protection of soil carbon (C) is one of the important components of C storage. However, its exact mechanisms are still not sufficiently lucid. The goal of this study was to explore the influence of soil structure, that is, soil pore spatial arrangements, with and without presence of plant residue on (i) decomposition of added plant residue, (ii) CO₂ emission from soil, and (iii) structure of soil bacterial communities. The study consisted of several soil incubation experiments with samples of contrasting pore characteristics with/without plant residue, accompanied by X-ray micro-tomographic analyses of soil pores and by microbial community analysis ofmore » amplified 16S–18S rRNA genes via pyrosequencing. We observed that in the samples with substantial presence of air-filled well-connected large (>30 µm) pores, 75–80% of the added plant residue was decomposed, cumulative CO₂ emission constituted 1,200 µm C g⁻¹ soil, and movement of C from decomposing plant residue into adjacent soil was insignificant. In the samples with greater abundance of water-filled small pores, 60% of the added plant residue was decomposed, cumulative CO₂ emission constituted 2,000 µm C g⁻¹ soil, and the movement of residue C into adjacent soil was substantial. In the absence of plant residue the influence of pore characteristics on CO₂ emission, that is on decomposition of the native soil organic C, was negligible. The microbial communities on the plant residue in the samples with large pores had more microbial groups known to be cellulose decomposers, that is, Bacteroidetes, Proteobacteria, Actinobacteria, and Firmicutes, while a number of oligotrophic Acidobacteria groups were more abundant on the plant residue from the samples with small pores. This study provides the first experimental evidence that characteristics of soil pores and their air/water flow status determine the phylogenetic composition of the local microbial community and directions and magnitudes of soil C decomposition processes.« less

Analysis of native water, bed material, and elutriate samples of major Louisiana waterways, 1975

USGS Publications Warehouse

Demas, Charles R.

1976-01-01

The U.S. Geological Survey, in cooperation with the U.S. Army Corps of Engineers, conducted a series of elutriate studies in selected reaches of major navigable waterways of Louisiana. As defined by the U.S. Environmental Protection Agency, an elutriate is the supernatant resulting from the vigorous 30-minute shaking of one part bottom sediment from the dredging site with four parts water (vol/vol) collected from the dredging site followed by one hour settling time and appropriate centrifugation and a 0.45-micron filtration. The elutriate studies were initiated to evaluate possible environmental effects of proposed dredging activities in selected reaches of Louisiana waterways. The waterways investigated were the Mississippi River-Gulf Outlet, Breton Sound, Mississippi River downstream from Baton Rouge, Bayou Long, Intracoastal Waterway (east and west of the Harvey Canal), Three Rivers area, Ouachita River, Barataria Bay, Houma Navigation Canal, Atchafalaya Bay (Ship Channel), Berwick Bay, Intracoastal Waterway (Port Allen to Morgan City), Petite Anse area, and Calcasieu River and Ship Channel. The Geological Survey collected 227 samples of native water and bed (bottom) material from 130 different sites. These samples (as well as elutriates prepared from mixtures of native water and bed material) were analyzed for selected metal, pesticide, nutrient, and organic constituents. An additional 116 bed samples collected at 58 sites were analyzed for selected pesticides; and 4 additional native-water samples from 2 sites were analyzed for selected metal pesticide, nutrient, and organic constituents. (Woodard-USGS)

Exposure of native bees foraging in an agricultural landscape to current-use pesticides.

PubMed

Hladik, Michelle L; Vandever, Mark; Smalling, Kelly L

2016-01-15

The awareness of insects as pollinators and indicators of environmental quality has grown in recent years, partially in response to declines in honey bee (Apis mellifera) populations. While most pesticide research has focused on honey bees, there has been less work on native bee populations. To determine the exposure of native bees to pesticides, bees were collected from an existing research area in northeastern Colorado in both grasslands (2013-2014) and wheat fields (2014). Traps were deployed bi-monthly during the summer at each land cover type and all bees, regardless of species, were composited as whole samples and analyzed for 136 current-use pesticides and degradates. This reconnaissance approach provides a sampling of all species and represents overall pesticide exposure (internal and external). Nineteen pesticides and degradates were detected in 54 composite samples collected. Compounds detected in >2% of the samples included: insecticides thiamethoxam (46%), bifenthrin (28%), clothianidin (24%), chlorpyrifos (17%), imidacloprid (13%), fipronil desulfinyl (7%; degradate); fungicides azoxystrobin (17%), pyraclostrobin (11%), fluxapyroxad (9%), and propiconazole (9%); herbicides atrazine (19%) and metolachlor (9%). Concentrations ranged from 1 to 310 ng/g for individual pesticides. Pesticides were detected in samples collected from both grasslands and wheat fields; the location of the sample and the surrounding land cover at the 1000 m radius influenced the pesticides detected but because of a small number of temporally comparable samples, correlations between pesticide concentration and land cover were not significant. The results show native bees collected in an agricultural landscape are exposed to multiple pesticides, these results can direct future research on routes/timing of pesticide exposure and the design of future conservation efforts for pollinators. Published by Elsevier B.V.

Exposure of native bees foraging in an agricultural landscape to current-use pesticides

USGS Publications Warehouse

Hladik, Michelle; Vandever, Mark W.; Smalling, Kelly L.

2016-01-01

The awareness of insects as pollinators and indicators of environmental quality has grown in recent years, partially in response to declines in honey bee (Apis mellifera) populations. While most pesticide research has focused on honey bees, there has been less work on native bee populations. To determine the exposure of native bees to pesticides, bees were collected from an existing research area in northeastern Colorado from two land cover types: grasslands (2013-2014) and wheat fields (2014). Traps were deployed bi-monthly during the summer at each land cover type and all bees, regardless of species, were composited as whole samples and analyzed for 136 current-use pesticides and degradates. This reconnaissance approach provides a sampling of all species and represents overall pesticide exposure (internal and external). Nineteen pesticides and degradates were detected in 54 composite samples collected. Compounds detected in >10% of the samples included the insecticides thiamethoxam (46%), bifenthrin (28%), clothianidin (24%), chlorpyrifos (17%), and imidacloprid (13%), the fungicides azoxystrobin (17%), and pyraclostrobin (11%), and the herbicide atrazine (19%). Concentrations ranged from 1.1 to 312 ng/g for individual pesticides. Pesticides were detected in samples collected from both grasslands and wheat fields; the location of the sample and the surrounding land cover at the 1000 m buffer influenced the pesticides detected but because of a small number of temporally comparable samples, correlations between pesticide concentration and land cover were not significant. The results show native bees collected in both grasslands and wheat fields are exposed to multiple pesticides, these results can direct future research on routes/timing of pesticide exposure and the design of future conservation efforts for pollinators.

Effect of impurities and post-experimental purification in SAD phasing with serial femtosecond crystallography data.

PubMed

Zhang, Tao; Gu, Yuanxin; Fan, Haifu

2016-06-01

In serial crystallography (SX) with either an X-ray free-electron laser (XFEL) or synchrotron radiation as the light source, huge numbers of micrometre-sized crystals are used in diffraction data collection. For a SAD experiment using a derivative with introduced heavy atoms, it is difficult to completely exclude crystals of the native protein from the sample. In this paper, simulations were performed to study how the inclusion of native crystals in the derivative sample could affect the result of SAD phasing and how the post-experimental purification proposed by Zhang et al. [(2015), Acta Cryst. D71, 2513-2518] could be used to remove the impurities. A gadolinium derivative of lysozyme and the corresponding native protein were used in the test. Serial femtosecond crystallography (SFX) diffraction snapshots were generated by CrystFEL. SHELXC/D, Phaser, DM, ARP/wARP and REFMAC were used for automatic structure solution. It is shown that a small amount of impurities (snapshots from native crystals) in the set of derivative snapshots can strongly affect the SAD phasing results. On the other hand, post-experimental purification can efficiently remove the impurities, leading to results similar to those from a pure sample.

Juvenile Rhus glabra leaves have higher temperatures and lower gas exchange rates than mature leaves when compared in the field during periods of high irradiance.

PubMed

Snider, John L; Choinski, John S; Wise, Robert R

2009-05-01

We sought to test the hypothesis that stomatal development determines the timing of gas exchange competency, which then influences leaf temperature through transpirationally driven leaf cooling. To test this idea, daily patterns of gas exchange and leaflet temperature were obtained from leaves of two distinctively different developmental stages of smooth sumac (Rhus glabra) grown in its native habitat. Juvenile and mature leaves were also sampled for ultrastructural studies of stomatal development. When plants were sampled in May-June, the hypothesis was supported: juvenile leaflets were (for part of the day) from 1.4 to 6.0 degrees C warmer than mature leaflets and as much as 2.0 degrees C above ambient air temperature with lower stomatal conductance and photosynthetic rates than mature leaflets. When measurements were taken from July to October, no significant differences were observed, although mature leaflet gas exchange rates declined to the levels of the juvenile leaves. The gas exchange data were supported by the observations that juvenile leaves had approximately half the number of functional stomata on a leaf surface area basis as did mature leaves. It was concluded that leaf temperature and stage of leaf development in sumac are strongly linked with the higher surface temperatures observed in juvenile leaflets in the early spring possibly being involved in promoting photosynthesis and leaf expansion when air temperatures are cooler.

Electroless Nickel Deposition for Front Side Metallization of Silicon Solar Cells

PubMed Central

Hsieh, Shu Huei; Hsieh, Jhong Min; Chen, Wen Jauh; Chuang, Chia Chih

2017-01-01

In this work, nickel thin films were deposited on texture silicon by electroless plated deposition. The electroless-deposited Ni layers were characterized by scanning electron microscopy (SEM), transmission electron microscopy (TEM), energy dispersive x-ray spectroscopy (EDS), X-ray diffraction analysis (XRD), and sheet resistance measurement. The results indicate that the dominant phase was Ni2Si and NiSi in samples annealed at 300–800 °C. Sheet resistance values were found to correlate well with the surface morphology obtained by SEM and the results of XRD diffraction. The Cu/Ni contact system was used to fabricate solar cells by using two different activating baths. The open circuit voltage (Voc) of the Cu/Ni samples, before and after annealing, was measured under air mass (AM) 1.5 conditions to determine solar cell properties. The results show that open circuit voltage of a solar cell can be enhanced when the activation solution incorporated hydrofluoric acid (HF). This is mainly attributed to the native silicon oxide layer that can be decreased and/or removed by HF with the corresponding reduction of series resistance. PMID:28805724

Biocompatible nanocrystalline natural bonelike carbonated hydroxyapatite synthesized by mechanical alloying in a record minimum time.

PubMed

Lala, S; Brahmachari, S; Das, P K; Das, D; Kar, T; Pradhan, S K

2014-09-01

Single phase nanocrystalline biocompatible A-type carbonated hydroxyapatite (A-cHAp) powder has been synthesized by mechanical alloying the stoichiometric mixture of CaCO3 and CaHPO4.2H2O powders in open air at room temperature within 2h of milling. The A-type carbonation in HAp is confirmed by FTIR analysis. Structural and microstructure parameters of as-milled powders are obtained from both Rietveld's powder structure refinement analysis and transmission electron microscopy. Size and lattice strain of nanocrystalline HAp particles are found to be anisotropic in nature. Mechanical alloying causes amorphization of a part of crystalline A-cHAp which is analogous to native bone mineral. Some primary bond lengths of as-milled samples are critically measured. MTT [3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide] assay test reveals high percentage of cell viability and hence confirms the biocompatibility of the sample. The overall results indicate that the processed A-cHAp has a chemical composition very close to that of biological apatite. Copyright © 2014 Elsevier B.V. All rights reserved.

A STORMWATER CONSTRUCTED WETLAND USING RENEWABLE AND RECYCLABLE MATERIALS AND NATIVE WETLAND PLANTS

EPA Science Inventory

To complete the first objective, we installed a weather station within the storm water drainage area that measured air temperature, relative humidity, solar radiation, wind speed, and rainfall. Measurements were taken every 30 minutes and included the average temperature, rela...

Nature Photography - Bald Eagles

NASA Image and Video Library

2016-12-13

An American bald eagle soars through the air above NASA's Kennedy Space Center in Florida. The center shares a border with the Merritt Island National Wildlife Refuge. More than 330 native and migratory bird species, 25 mammals, 117 fishes and 65 amphibians and reptiles call Kennedy and the wildlife refuge home.

Reconstructing a herbivore's diet using a novel rbcL DNA mini-barcode for plants.

PubMed

Erickson, David L; Reed, Elizabeth; Ramachandran, Padmini; Bourg, Norman A; McShea, William J; Ottesen, Andrea

2017-05-01

Next Generation Sequencing and the application of metagenomic analyses can be used to answer questions about animal diet choice and study the consequences of selective foraging by herbivores. The quantification of herbivore diet choice with respect to native versus exotic plant species is particularly relevant given concerns of invasive species establishment and their effects on ecosystems. While increased abundance of white-tailed deer ( Odocoileus virginianus ) appears to correlate with increased incidence of invasive plant species, data supporting a causal link is scarce. We used a metabarcoding approach (PCR amplicons of the plant rbc L gene) to survey the diet of white-tailed deer (fecal samples), from a forested site in Warren County, Virginia with a comprehensive plant species inventory and corresponding reference collection of plant barcode and chloroplast sequences. We sampled fecal pellet piles and extracted DNA from 12 individual deer in October 2014. These samples were compared to a reference DNA library of plant species collected within the study area. For 72 % of the amplicons, we were able to assign taxonomy at the species level, which provides for the first time-sufficient taxonomic resolution to quantify the relative frequency at which native and exotic plant species are being consumed by white-tailed deer. For each of the 12 individual deer we collected three subsamples from the same fecal sample, resulting in sequencing 36 total samples. Using Qiime, we quantified the plant DNA found in all 36 samples, and found that variance within samples was less than variance between samples ( F  = 1.73, P  = 0.004), indicating additional subsamples may not be necessary. Species level diversity ranged from 60 to 93 OTUs per individual and nearly 70 % of all plant sequences recovered were from native plant species. The number of species detected did reduce significantly (range 4-12) when we excluded species whose OTU composed <1 % of each sample's total. When compared to the abundance of native and non-natives plants inventoried in the local community, our results support the observation that white-tailed deer have strong foraging preferences, but these preferences were not consistent for species in either class. Deer forage behaviour may favour some exotic species, but not all.

Seroprevalence of Neospora caninum in slaughtered native cattle in Kurdistan province, Iran.

PubMed

Heidari, Heidar; Mohammadzadeh, Abdolmajid; Gharekhani, Jamal

2014-01-01

Neospora caninum is a worldwide distributed pathogen which causes abortion in cattle leading to economic loss in the cattle industry. The aim of this study was to determine the seroprevalence of N. caninum antibodies in the native cattle slaughtered in various areas of Kurdistan province (western Iran) from September 2010 to September 2011. Serum samples from 368 cattle slaughtered in seven slaughterhouses in this region were taken for detection of anti-N. caninum antibodies using commercial N. caninum ELISA kit. Antibodies to N. caninum were found in 29 samples (7.80%). The present study was the first report of Neospora infection in this region and indicated that native cattle of Kurdistan province were exposed to this parasite.

Native SAD is maturing.

PubMed

Rose, John P; Wang, Bi-Cheng; Weiss, Manfred S

2015-07-01

Native SAD phasing uses the anomalous scattering signal of light atoms in the crystalline, native samples of macromolecules collected from single-wavelength X-ray diffraction experiments. These atoms include sodium, magnesium, phosphorus, sulfur, chlorine, potassium and calcium. Native SAD phasing is challenging and is critically dependent on the collection of accurate data. Over the past five years, advances in diffraction hardware, crystallographic software, data-collection methods and strategies, and the use of data statistics have been witnessed which allow 'highly accurate data' to be routinely collected. Today, native SAD sits on the verge of becoming a 'first-choice' method for both de novo and molecular-replacement structure determination. This article will focus on advances that have caught the attention of the community over the past five years. It will also highlight both de novo native SAD structures and recent structures that were key to methods development.

Littoral fish assemblages of the alien-dominated Sacramento-San Joaquin Delta, California, 1980-1983 and 2001-2003

USGS Publications Warehouse

Brown, L.R.; Michniuk, D.

2007-01-01

We analyzed monthly boat electrofishing data to characterize the littoral fish assemblages of five regions of the Sacramento-San Joaquin Delta (northern, southern, eastern, western, and central), California, during two sampling periods, 1980-1983 (1980s) and 2001-2003 (2000s), to provide information pertinent to the restoration of fish populations in this highly altered estuary. During the 1980s, almost 11,000 fish were captured, including 13 native species and 24 alien species. During the 2000s, just over 39,000 fish were captured, including 15 native species and 24 alien species. Catch per unit effort (CPUE) of total fish, alien fish, and centrarchid fish were greater in the 2000s compared with the 1980s, largely because of increased centrarchid fish CPUE. These differences in CPUE were associated with the spread of submerged aquatic vegetation (SAV), particularly an alien aquatic macrophyte Egeria densa. Native fish CPUE declined from the 1980s to the 2000s, but there was no single factor that could explain the decline. Native fish were most abundant in the northern region during both sampling periods. Nonmetric multidimensional scaling indicated similar patterns of fish assemblage composition during the two sampling periods, with the northern and western regions characterized by the presence of native species. The separation of the northern and western regions from the other regions was most distinct in the 2000s. Our results suggest that native fish restoration efforts will be most successful in the northern portion of the Delta. Management decisions on the Delta should include consideration of possible effects on SAV in littoral habitats and the associated fish assemblages and ecological processes. ?? 2007 Estuarine Research Federation.

High prevalence of HBV/A1 subgenotype in native south Americans may be explained by recent economic developments in the Amazon.

PubMed

Godoy, Bibiane A; Gomes-Gouvêa, Michele S; Zagonel-Oliveira, Marcelo; Alvarado-Mora, Mónica V; Salzano, Francisco M; Pinho, João R R; Fagundes, Nelson J R

2016-09-01

Native American populations present the highest prevalence of Hepatitis B Virus (HBV) infection in the Americas, which may be associated to severe disease outcomes. Ten HBV genotypes (A–J) have been described, displaying a remarkable geographic structure, which most likely reflects historic patterns of human migrations. In this study, we characterize the HBV strains circulating in a historical sample of Native South Americans to characterize the historical viral dynamics in this population. The sample consisted of 1070 individuals belonging to 38 populations collected between 1965 and 1997. Presence of HBV DNA was checked by quantitative real-time PCR, and determination of HBV genotypes and subgenotypes was performed through sequencing and phylogenetic analysis of a fragment including part of HBsAg and Pol coding regions (S/Pol). A Bayesian Skyline Plot analysis was performed to compare the viral population dynamics of HBV/A1 strains found in Native Americans and in the general Brazilian population. A total of 109 individuals were positive for HBV DNA (~ 10%), and 70 samples were successfully sequenced and genotyped. Subgenotype A1 (HBV/A1), related to African populations and the African slave trade, was the most prevalent (66–94%). The Skyline Plot analysis showed a marked population expansion of HBV/A1 in Native Americans occurring more recently (1945–1965) than in the general Brazilian population. Our results suggest that historic processes that contributed to formation of HBV/A1 circulating in Native American are related with more recent migratory waves towards the Amazon basin, which generated a different viral dynamics in this region.

A comparative analysis of human plasma and serum proteins by combining native PAGE, whole-gel slicing and quantitative LC-MS/MS: Utilizing native MS-electropherograms in proteomic analysis for discovering structure and interaction-correlated differences.

PubMed

Wen, Meiling; Jin, Ya; Manabe, Takashi; Chen, Shumin; Tan, Wen

2017-12-01

MS identification has long been used for PAGE-separated protein bands, but global and systematic quantitation utilizing MS after PAGE has remained rare and not been reported for native PAGE. Here we reported on a new method combining native PAGE, whole-gel slicing and quantitative LC-MS/MS, aiming at comparative analysis on not only abundance, but also structures and interactions of proteins. A pair of human plasma and serum samples were used as test samples and separated on a native PAGE gel. Six lanes of each sample were cut, each lane was further sliced into thirty-five 1.1 mm × 1.1 mm squares and all the squares were subjected to standardized procedures of in-gel digestion and quantitative LC-MS/MS. The results comprised 958 data rows that each contained abundance values of a protein detected in one square in eleven gel lanes (one plasma lane excluded). The data were evaluated to have satisfactory reproducibility of assignment and quantitation. Totally 315 proteins were assigned, with each protein assigned in 1-28 squares. The abundance distributions in the plasma and serum gel lanes were reconstructed for each protein, named as "native MS-electropherograms". Comparison of the electropherograms revealed significant plasma-versus-serum differences on 33 proteins in 87 squares (fold difference > 2 or < 0.5, p < 0.05). Many of the differences matched with accumulated knowledge on protein interactions and proteolysis involved in blood coagulation, complement and wound healing processes. We expect this method would be useful to provide more comprehensive information in comparative proteomic analysis, on both quantities and structures/interactions. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Aging of organochlorine pesticides and polychlorinated biphenyls in muck soil: volatilization, bioaccessibility, and degradation.

PubMed

Wong, Fiona; Bidleman, Terry F

2011-02-01

An organic rich muck soil which is highly contaminated with native organochlorine pesticide (OCs) was spiked with known amounts of (13)C-labeled OCs and nonlabeled polychlorinated biphenyls (PCBs). Spiked soils were aged under indoor, outdoor, and sterile conditions and the change in volatility, surrogate bioaccessibility, and degradation of chemicals was monitored periodically over 730 d. Volatility was measured using a fugacity meter to characterize the soil-air partition coefficient (K(SA) = C(SOIL)/C(AIR)). The fraction of bioaccessible residues was estimated by comparing recoveries of chemical with a mild extractant, hydroxylpropyl-β-cyclodextrin (HPCD) vs a harsh extractant, DCM. K(SA) of the spiked OCs in the nonsterile (Indoor, Outdoor) soils were initially lower and approached the K(SA) of native OCs over time, showing reduction of volatility upon aging. HPCD extractability of spiked OCs and PCBs were negatively correlated with K(SA), which suggests that volatility can be used as a surrogate for bioaccessibility. Degradation of endosulfans, PCB 8 and 28 was observed in the nonsterile soils, and (13)C(6)-α-HCH showed selective degradation of the (+) enantiomer. Enantiomer fractions (EF) in air and HPCD extracts were lower than in nonsterile soils, suggesting greater sequestering of the (+) enantiomer in the soil during microbial degradation.

Biogeochemical variability of plants at native and altered sites, San Juan Basin, New Mexico

USGS Publications Warehouse

Gough, L.P.; Severson, R.C.

1981-01-01

The San Juan Basin is becoming a major energy resource region. The anticipated increase in strip mining for coal can be expected to alter the geochemical and biogeochemical environment. because such activities destroy the native vegetation communities, rearrange the rock strata, and disrupt natural soil development. This study investigated the variability in the biogeochemistry of native plant species at both undisturbed and altered sites and assessed the importance of the observed differences. Three studies are involved in this investigation: Study 1, the biogeochemical variability of native species found at sites throughout that part of the basin underlain by economically recoverable coal; Study 2, the biogeochemical variability of native species growing on soils considered favorable for use in the topsoiling of spoil areas; and Study 3, the biogeochemical variability of native species on rehabilitated sites at the San Juan coal mine. Summary statistics for concentrations of 35 elements (and ash yield) are reported in Study 1 for galleta grass, broom snakeweed, and fourwing saltbush. The concentrations of manganese, molybdenum, nickel, and uranium (and possibly iron and selenium) in galleta show regional patterns, with the highest values generally found in the south-central region and western edge of the study area. Differences in the concentration of elements between species was generally subtle (less than a factor of two) except for the following: ash yield of saltbush was two times that of the other plants; boron in snakeweed and saltbush was four times greater than in galleta; iron in galleta was two times greater than in saltbush; and, calcium, magnesium, potassium, phosphorus, and sulfur were generally highest in saltbush. Summary statistics (including the 95-percent expected range) for concentrations of 35 elements (and ash yield) are reported from Study 2 for galleta and broom snakeweed growing on the Sheppard, Shiprock, and Doak soil association. Significant regional (greater than 10 km) variation for aluminum, iron, sulfur, vanadium, and zirconium in galleta are reported; however, for most elements, a significant proportion of the variation in the data was measured locally (less than 0.1 km). This variation indicates that samples of galleta and snakeweed taken more than 10 km apart vary, in their element composition, little more than plants sampled as close together as 0.1 km. The concentrations of 35 elements (and ash yield) in alkali sacaton and fourwing saltbush, which were collected on a rehabilitation plot at the San Juan mine (Study 3), are compared with those of control samples of similar material from native sites from throughout the ,an Juan Basin. Concentrations of aluminum, arsenic, boron, cobalt, copper, fluorine, iron, lead, manganese, sodium, and uranium in samples of saltbush growing over spoil generally exceed the levels of these elements in control samples. For many elements, concentrations in mine samples are from two to five times higher 1 han concentrations in the control samples. Sodium concentrations i saltbush, however, were 100 times higher in mine samples than in control samples. This high concentration reflects a corresponding : OO-fold increase in the extractable sodium levels in spoil material s compared to C-horizon control samples. Sampled plants from the l1ine area, spaced relatively close together (5 m (meters) or less), vary greatly in their element compositions, apparently in response 1 J the heterogenous composition and element availability of the l1ine soils. Topsoiling to a depth of 20 cm (centimeters) does little to meliorate the uptake of elements from spoil by saltbush.

Seed rain under native and non-native tree species in the Cabo Rojo National Wildlife Refuge, Puerto Rico.

PubMed

Arias Garcia, Andrea; Chinea, J Danilo

2014-09-01

Seed dispersal is a fundamental process in plant ecology and is of critical importance for the restoration of tropical communities. The lands of the Cabo Rojo National Wildlife Refuge (CRNWR), formerly under agriculture, were abandoned in the 1970s and colonized mainly by non-native tree species of degraded pastures. Here we described the seed rain under the most common native and non-native trees in the refuge in an attempt to determine if focal tree geographic origin (native versus non-native) influences seed dispersal. For this, seed rain was sampled for one year under the canopies of four native and four non-native tree species common in this refuge using 40 seed traps. No significant differences were found for the abundance of seeds, or their diversity, dispersing under native versus non-native focal tree species, nor under the different tree species. A significantly different seed species composition was observed reaching native versus non-native focal species. However, this last result could be more easily explained as a function of distance of the closest adults of the two most abundantly dispersed plant species to the seed traps than as a function of the geographic origin of the focal species. We suggest to continue the practice of planting native tree species, not only as a way to restore the community to a condition similar to the original one, but also to reduce the distances needed for effective dispersal.

Interaction of glycophorin A with lectins as measured by surface plasmon resonance (SPR).

PubMed

Krotkiewska, Bozena; Pasek, Marta; Krotkiewski, Hubert

2002-01-01

Glycophorin A (GPA), the major sialoglycoprotein of the human erythrocyte membrane, was isolated from erythrocytes of healthy individuals of blood groups A, B and O using phenol-water extraction of erythrocyte membranes. Interaction of individual GPA samples with three lectins (Psathyrella velutina lectin, PVL; Triticum vulgaris lectin, WGA and Sambucus nigra I agglutinin SNA-I) was analyzed using a BIAcore biosensor equipped with a surface plasmon resonance (SPR) detector. The experiments showed no substantial differences in the interaction between native and desialylated GPA samples originating from erythrocytes of either blood group and each of the lectins. Desialylated samples reacted weaker than the native ones with all three lectins. PVL reacted about 50-fold more strongly than WGA which, similar to PVL, recognizes GlcNAc and Neu5Ac residues. SNA-I lectin, recognizing alpha2-6 linked Neu5Ac residues, showed relatively weak reaction with native and only residual reaction with desialylated GPA samples. The data obtained show that SPR is a valuable method to determine interaction of glycoproteins with lectins, which potentially can be used to detect differences in the carbohydrate moiety of individual glycoprotein samples.

43 CFR 2651.6 - Airport and air navigation facilities.

Code of Federal Regulations, 2011 CFR

2011-10-01

... and to insure safe approaches to airport runways, shall be conveyed by the village corporation to the State of Alaska, and the Secretary will include in the conveyance to any village corporation any and all... LAND MANAGEMENT, DEPARTMENT OF THE INTERIOR LAND RESOURCE MANAGEMENT (2000) ALASKA NATIVE SELECTIONS...

Defense.gov Special Report: National Native American Heritage Month -

Science.gov Websites

non-combat situation), Bronze Star - Operation DESERT STORM Campaign, Defense Meritorious Service Medal - Operation IRAQI FREEDOM, Defense Meritorious Service Medal - Operation ENDURING FREEDOM, and Campaign Medals - Operation IRAQI FREEDOM / Operation ENDURING FREEDOM. Maj. Maureen A. Trujillo U.S. Air

75 FR 15705 - Columbia Gas Transmission LLC; Notice of Intent To Prepare an Environmental Assessment for the...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-03-30

... interest groups; Native American Tribes; other interested parties; and local libraries and newspapers..., and wetlands; Cultural resources; Vegetation and wildlife; Air quality and noise; Endangered and... American Tribes; other interested parties; and local libraries and newspapers. This list also includes all...

Wildlife Photography - Bald Eagle

NASA Image and Video Library

2017-05-04

An American bald eagle soars through the air with its prey at NASA's Kennedy Space Center in Florida. The center shares a border with the Merritt Island National Wildlife Refuge. More than 330 native and migratory bird species, 25 mammals, 117 fishes and 65 amphibians and reptiles call Kennedy and the wildlife refuge home.

Runoff and sediment reduction from integration of native prairie filter strips into row-crop agriculture

USDA-ARS?s Scientific Manuscript database

Agroecosystems provide multiple benefits including food, fiber, fuel, clean water and air, habitat, carbon sequestration, recreation, and aesthetics. But most agricultural landscapes are managed for only a few of these benefits. This project aimed to evaluate how the integration of diverse perennial...

Effects of Uranium Oxides on Some of the Algae Native to Eglin Air Force Base, Florida.

DTIC Science & Technology

1982-06-01

Chlorella , and Selenastrum were not identified from the collections after microscopic examination. 4. MOBILITY OF DEPLETED URANIUM BY DISSOLUTION IN NATURAL...processes. A similar finding nas been previously reported for Chlorella regularis (Sakaguchi, Horikoshi, and Nakajima, 1978). In addition, uranium

Geostationary Coastal and Air Pollution Events (GeoCAPE) Wide Angle Spectrometer (WAS)

NASA Technical Reports Server (NTRS)

Kotecki, Carl; Chu, Martha; Mannino, Antonio; Marx, Catherine Trout; Bowers, Gregory A.; Bolognese, Jeffrey A.; Matson, Elizabeth A.; McBirney, Thomas R.; Earle, Cleland P.; Choi, Michael K.;

Development of a physical and electronic model for RuO 2 nanorod rectenna devices

NASA Astrophysics Data System (ADS)

Dao, Justin

Ruthenium oxide (RuO2) nanorods are an emergent technology in nanostructure devices. As the physical size of electronics approaches a critical lower limit, alternative solutions to further device miniaturization are currently under investigation. Thin-film nanorod growth is an interesting technology, being investigated for use in wireless communications, sensor systems, and alternative energy applications. In this investigation, self-assembled RuO2 nanorods are grown on a variety of substrates via a high density plasma, reactive sputtering process. Nanorods have been found to grow on substrates that form native oxide layers when exposed to air, namely silicon, aluminum, and titanium. Samples were analyzed with Scanning Electron Microscopy (SEM) and Transmission Electron Microscopy (TEM) techniques. Conductive Atomic Force Microscopy (C-AFM) measurements were performed on single nanorods to characterize structure and electrical conductivity. The C-AFM probe tip is placed on a single nanorod and I-V characteristics are measured, potentially exhibiting rectifying capabilities. An analysis of these results using fundamental semiconductor physics principles is presented. Experimental data for silicon substrates was most closely approximated by the Simmons model for direct electron tunneling, whereas that of aluminum substrates was well approximated by Fowler-Nordheim tunneling. The native oxide of titanium is regarded as a semiconductor rather than an insulator and its ability to function as a rectifier is not strong. An electronic model for these nanorods is described herein.

Reconstructing a herbivore’s diet using a novel rbcL DNA mini-barcode for plants

USGS Publications Warehouse

Erickson, David L.; Reed, Elizabeth; Ramachandran, Padmini; Bourg, Norman; McShea, William J.; Ottesen, Andrea

2017-01-01

Next Generation Sequencing and the application of metagenomic analyses can be used to answer questions about animal diet choice and study the consequences of selective foraging by herbivores. The quantification of herbivore diet choice with respect to native versus exotic plant species is particularly relevant given concerns of invasive species establishment and their effects on ecosystems. While increased abundance of white-tailed deer (Odocoileus virginianus) appears to correlate with increased incidence of invasive plant species, data supporting a causal link is scarce. We used a metabarcoding approach (PCR amplicons of the plant rbcL gene) to survey the diet of white-tailed deer (fecal samples), from a forested site in Warren County, Virginia with a comprehensive plant species inventory and corresponding reference collection of plant barcode and chloroplast sequences. We sampled fecal pellet piles and extracted DNA from 12 individual deer in October 2014. These samples were compared to a reference DNA library of plant species collected within the study area. For 72 % of the amplicons, we were able to assign taxonomy at the species level, which provides for the first time—sufficient taxonomic resolution to quantify the relative frequency at which native and exotic plant species are being consumed by white-tailed deer. For each of the 12 individual deer we collected three subsamples from the same fecal sample, resulting in sequencing 36 total samples. Using Qiime, we quantified the plant DNA found in all 36 samples, and found that variance within samples was less than variance between samples (F = 1.73, P = 0.004), indicating additional subsamples may not be necessary. Species level diversity ranged from 60 to 93 OTUs per individual and nearly 70 % of all plant sequences recovered were from native plant species. The number of species detected did reduce significantly (range 4–12) when we excluded species whose OTU composed <1 % of each sample’s total. When compared to the abundance of native and non-natives plants inventoried in the local community, our results support the observation that white-tailed deer have strong foraging preferences, but these preferences were not consistent for species in either class. Deer forage behaviour may favour some exotic species, but not all.

Reconstructing a herbivore’s diet using a novel rbcL DNA mini-barcode for plants

PubMed Central

Erickson, David L.; Reed, Elizabeth; Ramachandran, Padmini; Bourg, Norman A.; Ottesen, Andrea

2017-01-01

Abstract Next Generation Sequencing and the application of metagenomic analyses can be used to answer questions about animal diet choice and study the consequences of selective foraging by herbivores. The quantification of herbivore diet choice with respect to native versus exotic plant species is particularly relevant given concerns of invasive species establishment and their effects on ecosystems. While increased abundance of white-tailed deer (Odocoileus virginianus) appears to correlate with increased incidence of invasive plant species, data supporting a causal link is scarce. We used a metabarcoding approach (PCR amplicons of the plant rbcL gene) to survey the diet of white-tailed deer (fecal samples), from a forested site in Warren County, Virginia with a comprehensive plant species inventory and corresponding reference collection of plant barcode and chloroplast sequences. We sampled fecal pellet piles and extracted DNA from 12 individual deer in October 2014. These samples were compared to a reference DNA library of plant species collected within the study area. For 72 % of the amplicons, we were able to assign taxonomy at the species level, which provides for the first time—sufficient taxonomic resolution to quantify the relative frequency at which native and exotic plant species are being consumed by white-tailed deer. For each of the 12 individual deer we collected three subsamples from the same fecal sample, resulting in sequencing 36 total samples. Using Qiime, we quantified the plant DNA found in all 36 samples, and found that variance within samples was less than variance between samples (F = 1.73, P = 0.004), indicating additional subsamples may not be necessary. Species level diversity ranged from 60 to 93 OTUs per individual and nearly 70 % of all plant sequences recovered were from native plant species. The number of species detected did reduce significantly (range 4–12) when we excluded species whose OTU composed <1 % of each sample’s total. When compared to the abundance of native and non-natives plants inventoried in the local community, our results support the observation that white-tailed deer have strong foraging preferences, but these preferences were not consistent for species in either class. Deer forage behaviour may favour some exotic species, but not all. PMID:28533898

The Relevance of Cultural Activities in Ethnic Identity Among California Native American Youth

PubMed Central

Schweigman, Kurt; Soto, Claradina; Wright, Serena; Unger, Jennifer

2013-01-01

This study analyzed data from a large statewide sample of Native American adolescents throughout California to determine whether participation in cultural practices was associated with stronger ethnic identity. The Multigroup Ethnic Identity Measure (MEIM) scale was used to measure the ethnic identity of 945 Native American adolescents (416 male, 529 female) aged 13 – 19 across California. Respondents who participated in cultural activities including pow-wows, sweat lodge, drum group and roundhouse dance reported significantly higher Native American ethnic identity than their counterparts who did not take part in cultural activities. The association between cultural activities and ethnic identity was only significant among urban youth and not among reservation youth. Higher grades in school were associated with ethnic identity among females but not among males. Findings from this study show a strong association between cultural activities and traditional practices with tribal enculturation among Native American youth in California. Cultural-based practices to enhance Native identity could be useful to improve mental and behavioral health among Native American youth. PMID:22400467

Non-native plants add to the British flora without negative consequences for native diversity.

PubMed

Thomas, Chris D; Palmer, G

2015-04-07

Plants are commonly listed as invasive species, presuming that they cause harm at both global and regional scales. Approximately 40% of all species listed as invasive within Britain are plants. However, invasive plants are rarely linked to the national or global extinction of native plant species. The possible explanation is that competitive exclusion takes place slowly and that invasive plants will eventually eliminate native species (the "time-to-exclusion hypothesis"). Using the extensive British Countryside Survey Data, we find that changes to plant occurrence and cover between 1990 and 2007 at 479 British sites do not differ between native and non-native plant species. More than 80% of the plant species that are widespread enough to be sampled are native species; hence, total cover changes have been dominated by native species (total cover increases by native species are more than nine times greater than those by non-native species). This implies that factors other than plant "invasions" are the key drivers of vegetation change. We also find that the diversity of native species is increasing in locations where the diversity of non-native species is increasing, suggesting that high diversities of native and non-native plant species are compatible with one another. We reject the time-to-exclusion hypothesis as the reason why extinctions have not been observed and suggest that non-native plant species are not a threat to floral diversity in Britain. Further research is needed in island-like environments, but we question whether it is appropriate that more than three-quarters of taxa listed globally as invasive species are plants.

Low-cost cryo-light microscopy stage fabrication for correlated light/electron microscopy.

PubMed

Carlson, David B; Evans, James E

2011-06-05

The coupling of cryo-light microscopy (cryo-LM) and cryo-electron microscopy (cryo-EM) poses a number of advantages for understanding cellular dynamics and ultrastructure. First, cells can be imaged in a near native environment for both techniques. Second, due to the vitrification process, samples are preserved by rapid physical immobilization rather than slow chemical fixation. Third, imaging the same sample with both cryo-LM and cryo-EM provides correlation of data from a single cell, rather than a comparison of "representative samples". While these benefits are well known from prior studies, the widespread use of correlative cryo-LM and cryo-EM remains limited due to the expense and complexity of buying or building a suitable cryogenic light microscopy stage. Here we demonstrate the assembly, and use of an inexpensive cryogenic stage that can be fabricated in any lab for less than $40 with parts found at local hardware and grocery stores. This cryo-LM stage is designed for use with reflected light microscopes that are fitted with long working distance air objectives. For correlative cryo-LM and cryo-EM studies, we adapt the use of carbon coated standard 3-mm cryo-EM grids as specimen supports. After adsorbing the sample to the grid, previously established protocols for vitrifying the sample and transferring/handling the grid are followed to permit multi-technique imaging. As a result, this setup allows any laboratory with a reflected light microscope to have access to direct correlative imaging of frozen hydrated samples.

Native SAD is maturing

PubMed Central

Rose, John P.; Wang, Bi-Cheng; Weiss, Manfred S.

2015-01-01

Native SAD phasing uses the anomalous scattering signal of light atoms in the crystalline, native samples of macromolecules collected from single-wavelength X-ray diffraction experiments. These atoms include sodium, magnesium, phosphorus, sulfur, chlorine, potassium and calcium. Native SAD phasing is challenging and is critically dependent on the collection of accurate data. Over the past five years, advances in diffraction hardware, crystallographic software, data-collection methods and strategies, and the use of data statistics have been witnessed which allow ‘highly accurate data’ to be routinely collected. Today, native SAD sits on the verge of becoming a ‘first-choice’ method for both de novo and molecular-replacement structure determination. This article will focus on advances that have caught the attention of the community over the past five years. It will also highlight both de novo native SAD structures and recent structures that were key to methods development. PMID:26175902

The art and science of weed mapping

USGS Publications Warehouse

Barnett, David T.; Stohlgren, Thomas J.; Jarnevich, Catherine S.; Chong, Geneva W.; Ericson, Jenny A.; Davern, Tracy R.; Simonson, Sara E.

2007-01-01

Land managers need cost-effective and informative tools for non-native plant species management. Many local, state, and federal agencies adopted mapping systems designed to collect comparable data for the early detection and monitoring of non-native species. We compared mapping information to statistically rigorous, plot-based methods to better understand the benefits and compatibility of the two techniques. Mapping non-native species locations provided a species list, associated species distributions, and infested area for subjectively selected survey sites. The value of this information may be compromised by crude estimates of cover and incomplete or biased estimations of species distributions. Incorporating plot-based assessments guided by a stratified-random sample design provided a less biased description of non-native species distributions and increased the comparability of data over time and across regions for the inventory, monitoring, and management of non-native and native plant species.

Environmental Assessment for Atlantic White Cedar Restoration Project at Dare County Range, Seymour Johnson Air Force Base, North Carolina

DTIC Science & Technology

2014-12-23

bond of$5,000 with ENR running to Stale of NC: conditional that n Permit to drill exploratory oil or gas well m1y well opened by drill operator shall...Native American Consultation B – U.S. Fish and Wildlife Service Endangered Species Consultation C – Greenhouse Gas Estimates D – Air Emissions...on the north by the Albemarle Sound, on the west by the Alligator River, on the east by the Croatan Sound, and on the southeast by the Pamlico Sound

Y-chromosome diversity in Native Mexicans reveals continental transition of genetic structure in the Americas.

PubMed

Sandoval, Karla; Moreno-Estrada, Andres; Mendizabal, Isabel; Underhill, Peter A; Lopez-Valenzuela, Maria; Peñaloza-Espinosa, Rosenda; Lopez-Lopez, Marisol; Buentello-Malo, Leonor; Avelino, Heriberto; Calafell, Francesc; Comas, David

2012-07-01

The genetic characterization of Native Mexicans is important to understand multiethnic based features influencing the medical genetics of present Mexican populations, as well as to the reconstruct the peopling of the Americas. We describe the Y-chromosome genetic diversity of 197 Native Mexicans from 11 populations and 1,044 individuals from 44 Native American populations after combining with publicly available data. We found extensive heterogeneity among Native Mexican populations and ample segregation of Q-M242* (46%) and Q-M3 (54%) haplogroups within Mexico. The northernmost sampled populations falling outside Mesoamerica (Pima and Tarahumara) showed a clear differentiation with respect to the other populations, which is in agreement with previous results from mtDNA lineages. However, our results point toward a complex genetic makeup of Native Mexicans whose maternal and paternal lineages reveal different narratives of their population history, with sex-biased continental contributions and different admixture proportions. At a continental scale, we found that Arctic populations and the northernmost groups from North America cluster together, but we did not find a clear differentiation within Mesoamerica and the rest of the continent, which coupled with the fact that the majority of individuals from Central and South American samples are restricted to the Q-M3 branch, supports the notion that most Native Americans from Mesoamerica southwards are descendants from a single wave of migration. This observation is compatible with the idea that present day Mexico might have constituted an area of transition in the diversification of paternal lineages during the colonization of the Americas. Copyright © 2012 Wiley Periodicals, Inc.

A Novel Method for Sampling Alpha-Helical Protein Backbones

DOE R&D Accomplishments Database

Fain, Boris; Levitt, Michael

2001-01-01

We present a novel technique of sampling the configurations of helical proteins. Assuming knowledge of native secondary structure, we employ assembly rules gathered from a database of existing structures to enumerate the geometrically possible 3-D arrangements of the constituent helices. We produce a library of possible folds for 25 helical protein cores. In each case the method finds significant numbers of conformations close to the native structure. In addition we assign coordinates to all atoms for 4 of the 25 proteins. In the context of database driven exhaustive enumeration our method performs extremely well, yielding significant percentages of structures (0.02%--82%) within 6A of the native structure. The method's speed and efficiency make it a valuable contribution towards the goal of predicting protein structure.

Historical exposure to inorganic mercury at the smelter works of Abbadia San Salvatore, Italy.

PubMed

Bellander, T; Merler, E; Ceccarelli, F; Boffetta, P

1998-02-01

Metallic mercury production from cinnabar ore may result in high exposures to inorganic mercury, that are difficult to assess separately from the exposures originating from underground extraction, and previously have only been scantily described. We retrieved and analysed the air and biological mercury determinations on workers involved in the smelting process of the Abbadia San Salvatore mine (Monte Amiata, Italy). Native mercury was not present in the ore, and the exposure in the underground extraction was low. The smelter operated from 1897 to 1983. Blood and urine (24/h urine collections and concentration samples) had been sampled in 1968 to 1982, and analysed for mercury by atomic absorption spectrophotometry, and relate to all subjects. Exposure to mercury in air had been determined in a small set of personal samples in 1982. The data relate to all jobs in the smelter process, and all jobs entailed substantial exposure to mercury. The overall distribution of breathing zone air, blood and urinary levels is right-skewed and similar to the log-normal distribution (air, median 48 micrograms/m3, n = 49; blood, arithmetic mean AM 49 micrograms/L; geometric mean GM 26 micrograms/L, n = 192; urinary excretion, AM 140 micrograms/24 h, GM 78 micrograms/24 h, n = 839; and urinary concentration, AM 160 micrograms/L, GM 83 micrograms/L, n = 632). Air, blood and urinary values show a high ratio of the between- and within-job variance, indicating differences in exposure by job. Cinnabar pigment production, of which the exposure has not been characterised previously, was the job with the highest air (AM 160 micrograms/m3) and urinary levels (excretion AM 690 micrograms/24 h; concentration AM 1100 micrograms/L). Other jobs with high urinary levels were soot purification, laboratory work, and bottling. Cleaning of condensers showed the highest blood level (AM 280 micrograms/L). There is a downwards time trend in mercury concentration in blood and in urine. The corresponding trend is not seen for urinary excretion levels, the reason for this being unclear. Roasters, which is the most frequently monitored group, show however a decreasing trend in all sets of data (e.g. the mean of urinary excretion decreased from 300 micrograms/24 h in 1968/69 to 50 micrograms/24 h in 1980/81). The mercury exposure experienced by the smelters of Abbadia San Salvatore is in line with the few available data on workers from other mercury mines and smelters, and our data confirm the high exposure levels in this occupational group, in particular at cinnabar pigment production, soot purification, and condenser cleaning.

Towards native-state imaging in biological context in the electron microscope

PubMed Central

Weston, Anne E.; Armer, Hannah E. J.

2009-01-01

Modern cell biology is reliant on light and fluorescence microscopy for analysis of cells, tissues and protein localisation. However, these powerful techniques are ultimately limited in resolution by the wavelength of light. Electron microscopes offer much greater resolution due to the shorter effective wavelength of electrons, allowing direct imaging of sub-cellular architecture. The harsh environment of the electron microscope chamber and the properties of the electron beam have led to complex chemical and mechanical preparation techniques, which distance biological samples from their native state and complicate data interpretation. Here we describe recent advances in sample preparation and instrumentation, which push the boundaries of high-resolution imaging. Cryopreparation, cryoelectron microscopy and environmental scanning electron microscopy strive to image samples in near native state. Advances in correlative microscopy and markers enable high-resolution localisation of proteins. Innovation in microscope design has pushed the boundaries of resolution to atomic scale, whilst automatic acquisition of high-resolution electron microscopy data through large volumes is finally able to place ultrastructure in biological context. PMID:19916039

Using native epiphytic ferns to estimate the atmospheric mercury levels in a small-scale gold mining area of West Java, Indonesia.

PubMed

Kono, Yuriko; Rahajoe, Joeni S; Hidayati, Nuril; Kodamatani, Hitoshi; Tomiyasu, Takashi

2012-09-01

Mercury pollution is caused by artisanal and small-scale gold mining (ASGM) operations along the Cikaniki River (West Java, Indonesia). The atmosphere is one of the primary media through which mercury can disperse. In this study, atmospheric mercury levels are estimated using the native epiphytic fern Asplenium nidus complex (A. nidus) as a biomonitor; these estimates shed light on the atmospheric dispersion of mercury released during mining. Samples were collected from 8 sites along the Cikaniki Basin during September-November, 2008 and September-November, 2009. The A. nidus fronds that were attached to tree trunks 1-3m above the ground were collected and measured for total mercury concentration using cold vapor atomic absorption spectrometry (CVAAS) after acid-digestion. The atmospheric mercury was collected using porous gold collectors, and the concentrations were determined using double-amalgam CVAAS. The highest atmospheric mercury concentration, 1.8 × 10(3) ± 1.6 × 10(3) ngm(-3), was observed at the mining hot spot, and the lowest concentration of mercury, 5.6 ± 2.0 ngm(-3), was observed at the remote site from the Cikaniki River in 2009. The mercury concentrations in A. nidus were higher at the mining village (5.4 × 10(3) ± 1.6 × 10(3) ngg(-1)) than at the remote site (70 ± 30 ngg(-1)). The distribution of mercury in A. nidus was similar to that in the atmosphere; a significant correlation was observed between the mercury concentrations in the air and in A. nidus (r=0.895, P<0.001, n=14). The mercury levels in the atmosphere can be estimated from the mercury concentration in A. nidus using a regression equation: log (Hg(A.nidu)/ngg(-1))=0.740 log (Hg(Air)/ngm (-3)) - 1.324. Copyright © 2012 Elsevier Ltd. All rights reserved.

Structural characterization of native high-methoxylated pectin using nuclear magnetic resonance spectroscopy and ultraviolet matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Comparative use of 2,5-dihydroxybenzoic acid and nor-harmane as UV-MALDI matrices.

PubMed

Monge, María Eugenia; Negri, R Martín; Kolender, Adriana A; Erra-Balsells, Rosa

2007-01-01

The successful analysis by ultraviolet matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (UV-MALDI-TOF MS) of native and hydrolyzed high-methoxylated pectin samples is described. In order to find the optimal conditions for UV-MALDI-TOF MS analysis several experimental variables were studied such as: different UV-MALDI matrices (nor-harmane, 2,5-dihydroxybenzoic acid), sample preparation methods (mixture, sandwich), inorganic salt addition (doping salts, NaCl, KCl, NH(4)Cl), ion mode (positive, negative), linear and reflectron mode, etc. nor-Harmane has never been used as a UV-MALDI matrix for the analysis of pectins but its use avoids pre-treatment of the sample, such as an enzymatic digestion or an acid hydrolysis, and there is no need to add salts, making the analysis easier and faster. This study suggested an alternative way of analyzing native high-methoxylated pectins, with UV-MALDI-TOF MS, by using nor-harmane as the matrix in negative ion mode. The analysis by (1)H and (13)C nuclear magnetic resonance (NMR) spectroscopy of the native and hydrolyzed pectin is also briefly described. Copyright (c) 2007 John Wiley & Sons, Ltd.

Use of vegetation sampling and analysis to detect a problem within a portion of a prairie restoration project.

PubMed

Franson, Raymond; Scholes, Chad; Krabbe, Stephen

2017-01-02

In June 2005, the Department of Energy (DOE) began establishing the 60-ha Howell Prairie around the disposal cell at the DOE Weldon Spring Site (WSS). Prairies were historically present in the area of the site. Quantitative Cover sampling was used to quantify Total Cover, Native Grass Cover, Non-Native Grass Cover, Native Forb Cover, Non-Native Forb Cover, Warm Season (C 4 Grass), Cool Season (C 3 Grass), Perennial Cover and Annual Cover, Litter, and Bare Ground. Four permanent vegetation sampling plots were established. The first 4 years of vegetation measurements at Howell Prairie were made during above-average rainfall years on burned and unburned plots. The fifth-year (2012) vegetation measurements were made after below-average rainfall. Five years of results not only document the consistency of the restoration effort in three areas, but also demonstrate deficiencies in Grass Cover in a fourth area. The results are not only useful for Howell Prairie, but will be useful for restoration work throughout the region. Restoration work suffers from a lack of success monitoring and in this case from a lack of available reference areas. Floristic Quality Indices are used to make qualitative comparisons of the site to Konza Prairie sites.

Early detection of non-native fishes using next-generation DNA sequencing of fish larvae

EPA Science Inventory

Our objective was to evaluate the use of fish larvae for early detection of non-native fishes, comparing traditional and molecular taxonomy based on next-generation DNA sequencing to investigate potential efficiencies. Our approach was to intensively sample a Great Lakes non-nati...

A Correlation Study of Secondary Education and Postsecondary Outcomes for Native Americans with Disabilities

ERIC Educational Resources Information Center

Graham, Deborah J.

2016-01-01

This nonexperimental quantitative correlation study examined relationships between select special education and standardized testing variables for a purposive homogeneous sample of Arizona secondary school districts with Native American populations, and the archival records for students with disabilities postsecondary outcomes between 2012 and…

Changes in native bull trout and non-native brook trout distributions in the upper Powder River basin after 20 years, relationships to water temperature and implications of climate change

Treesearch

Philip J. Howell

2017-01-01

Many bull trout populations have declined from non-native brook trout introductions, habitat changes (e.g. water temperature) and other factors. We systematically sampled the distribution of bull trout and brook trout in the upper Powder River basin in Oregon in the 1990s and resampled it in 2013–2015, examined temperature differences in the habitats of the two species...

Evaluation of a native vegetation masking technique

NASA Technical Reports Server (NTRS)

Kinsler, M. C.

1984-01-01

A crop masking technique based on Ashburn's vegetative index (AVI) was used to evaluate native vegetation as an indicator of crop moisture condition. A mask of the range areas (native vegetation) was generated for each of thirteen Great Plains LANDSAT MSS sample segments. These masks were compared to the digitized ground truth and accuracies were computed. An analysis of the types of errors indicates a consistency in errors among the segments. The mask represents a simple quick-look technique for evaluating vegetative cover.

In vivo multiphoton tomography and fluorescence lifetime imaging of human brain tumor tissue.

PubMed

Kantelhardt, Sven R; Kalasauskas, Darius; König, Karsten; Kim, Ella; Weinigel, Martin; Uchugonova, Aisada; Giese, Alf

2016-05-01

High resolution multiphoton tomography and fluorescence lifetime imaging differentiates glioma from adjacent brain in native tissue samples ex vivo. Presently, multiphoton tomography is applied in clinical dermatology and experimentally. We here present the first application of multiphoton and fluorescence lifetime imaging for in vivo imaging on humans during a neurosurgical procedure. We used a MPTflex™ Multiphoton Laser Tomograph (JenLab, Germany). We examined cultured glioma cells in an orthotopic mouse tumor model and native human tissue samples. Finally the multiphoton tomograph was applied to provide optical biopsies during resection of a clinical case of glioblastoma. All tissues imaged by multiphoton tomography were sampled and processed for conventional histopathology. The multiphoton tomograph allowed fluorescence intensity- and fluorescence lifetime imaging with submicron spatial resolution and 200 picosecond temporal resolution. Morphological fluorescence intensity imaging and fluorescence lifetime imaging of tumor-bearing mouse brains and native human tissue samples clearly differentiated tumor and adjacent brain tissue. Intraoperative imaging was found to be technically feasible. Intraoperative image quality was comparable to ex vivo examinations. To our knowledge we here present the first intraoperative application of high resolution multiphoton tomography and fluorescence lifetime imaging of human brain tumors in situ. It allowed in vivo identification and determination of cell density of tumor tissue on a cellular and subcellular level within seconds. The technology shows the potential of rapid intraoperative identification of native glioma tissue without need for tissue processing or staining.

Concentration of trace elements on branded cigarette in Malaysia

NASA Astrophysics Data System (ADS)

Azman, Muhammad Azfar; Yasir, Muhamad Samudi; Rahman, Irman Abdul; Hamzah, Suhaimi; Rahman, Shamsiah Abdul; Elias, Md Suhaimi; Abdullah, Nazaratul Ashifa; Hashim, Azian; Shukor, Shakirah Abd

2016-01-01

Tobacco is a plant that is used as a recreational drug since the beginning of its use by the Native Americans. Now with the development of the tobacco industry, smoking has become a norm for the public in Malaysia. Trace elements in plants are mostly due to the uptake processes from the soils into the roots of the plants. The concentration of the elements may also be influenced by the elements contained in the water and also fertilizers. This paper aim to analyze the concentration of the trace elements contained in the branded cigarettes sold in Malaysia by utilizing the neutron activation analysis. The tobaccos were taken out from the cigarettes. The collected samples were air dried and passed through 2 mm sieve. Instrumental Neutron Activation Analysis (NAA) has been used for the determination of trace elements. Samples were activated in the Nuclear Malaysia Triga Mark II reactor with a neutron flux of 2.0 x 1012 n cm-2 s-1. The samples then were analyzed using ORTEC Gamma Spectrometer a co-axial n-type HPGe detector with resolution of 2.0 keV at 1332 keV and relative efficiency of 20%. The data obtained could help in assessing the concentration of the trace elements that complying with the standard limitation dose proposed by World Health Organization (WHO).

Lake sturgeon population characteristics in Rainy Lake, Minnesota and Ontario

USGS Publications Warehouse

Adams, W.E.; Kallemeyn, L.W.; Willis, D.W.

2006-01-01

Rainy Lake contains a native population of lake sturgeon Acipenser fulvescens that has been largely unstudied. The aims of this study were to document the population characteristics of lake sturgeon in Rainy Lake and to relate environmental factors to year-class strength for this population. Gill-netting efforts throughout the study resulted in the capture of 322 lake sturgeon, including 50 recaptures. Lake sturgeon in Rainy Lake was relatively plump and fast growing compared with a 32-population summary. Population samples were dominated by lake sturgeon between 110 and 150 cm total length. Age–structure analysis of the samples indicated few younger (<10 years) lake sturgeon, but the smallest gill net mesh size used for sampling was 102 mm (bar measure) and would not retain small sturgeon. Few lake sturgeon older than age 50 years were captured, and maximum age of sampled fish was 59 years. Few correlations existed between lake sturgeon year-class indices and both annual and monthly climate variables, except that mean June air temperature was positively correlated with year-class strength. Analysis of Rainy Lake water elevation and resulting lake sturgeon year-class strength indices across years yielded consistent but weak negative correlations between late April and early June, when spawning of lake sturgeon occurs. The baseline data collected in this study should allow Rainy Lake biologists to establish more specific research questions in the future.

Structure and content of Native American stereotypic subgroups: Not just (ig)noble.

PubMed

Burkley, Edward; Durante, Federica; Fiske, Susan T; Burkley, Melissa; Andrade, Angela

2017-04-01

Prejudice against Native Americans as an overall group generally polarizes into positive and negative stereotypic extremes, but distinct subgroups may explain this variability. Using college student samples (Study 1), a preliminary study identified common Native American subgroups and then a main study (N = 153, 74% women, 73% White, mean age = 19 years) had participants rate these subgroups on basic dimensions of stereotype content (i.e., warmth and competence), elicited emotions (e.g., admiration, contempt), and elicited behaviors (e.g., facilitation, harm). In Study 2, these preliminary study and main study procedures were replicated using nationwide samples (main study: N = 139, 51% women, 78% White, mean age = 35 years). For the most part, similar Native American subgroups emerged in both samples. Using the stereotype content model (SCM; Fiske, Cuddy, Glick, & Xu, 2002), the subgroups were found to vary along a competence-by-warmth space. The majority of subgroups (e.g., alcoholics, lazy) were judged low in both competence and warmth. Additional subgroups (e.g., casino operators, warriors) were ambivalently judged as high on competence but low on warmth. Subgroups perceived as high in both competence and warmth elicited more admiration, those low in both competence and warmth elicited more contempt, those high in competence elicited more passive facilitation and less passive harm, and those high in warmth elicited more active facilitation and less active harm. Native American stereotypes are apparently characterized by both noble and ignoble subgroups, highlighting the importance of studying stereotypes at the subgroup level. (PsycINFO Database Record (c) 2017 APA, all rights reserved).

Teaching Botanical Identification to Adults: Experiences of the UK Participatory Science Project "Open Air Laboratories"

ERIC Educational Resources Information Center

Stagg, Bethan C.; Donkin, Maria

2013-01-01

Taxonomic education and botany are increasingly neglected in schools and universities, leading to a "missed generation" of adults that cannot identify organisms, especially plants. This study pilots three methods for teaching identification of native plant species to forty-three adults engaged in the participatory science project…

Analyzing the movement of an invasive weevil (Polydrusus sericeus) using stable Isotopes

Treesearch

Joanne Lund; Paula Marquardt; William Jr. Mattson

2010-01-01

To better understand the response of insect populations to increasing CO2 and O3, we used ratios of stable carbon isotopes (d 13C) to trace the movement of an invasive insect in mixed tree communities grown under different air quality conditions. Polydrusus sericeus is a non-native...

Environmental Assessment for the Installation of a Reclaimed Water Irrigation System Improvement Project at Tyndall Air Force Base, Florida

DTIC Science & Technology

2012-05-04

crossing, and three herbaceous wetlands within the Gulf Power Easement portion of the action alternative 2 alignment. Cogon grass ( Imperata ... cylindrica ), an invasive, non-native species, is also located in some areas within the utility easement. Tyndall AFB is actively trying to eliminate the

Sensitivity of summer stream temperatures to climate variability in the Pacific Northwest

Treesearch

Charles Luce; Brian Staab; Marc Kramer; Seth Wenger; Dan Isaak; Callie McConnell

2014-01-01

Estimating the thermal response of streams to a warming climate is important for prioritizing native fish conservation efforts. While there are plentiful estimates of air temperature responses to climate change, the sensitivity of streams, particularly small headwater streams, to warming temperatures is less well understood. A substantial body of literature correlates...

Nature Photography - Bald Eagles

NASA Image and Video Library

2016-12-13

An American bald eagle soars through the air above NASA's Kennedy Space Center in Florida. The center shares a border with the Merritt Island National Wildlife Refuge. The bird is one of more than 330 native and migratory bird species, 25 mammals, 117 fishes and 65 amphibians and reptiles that call Kennedy and the wildlife refuge home.

Nature Photography - Birds

NASA Image and Video Library

2016-12-12

A flock of egrets soars above the Skid Strip at Cape Canaveral Air Force Station, near NASA's Kennedy Space Center in Florida. The center shares a boundary with the Merritt Island National Wildlife Refuge. The refuge is home to more than 65 amphibian and reptile species, along with 330 native and migratory bird species, 25 mammal and 117 fish species.

Final Environmental Assessment for Expanding the North Military Operations in Urban Terrain (MOUT) Target Array at Avon Park Air Force Range, Florida

DTIC Science & Technology

2005-01-01

native groundcover vegetation. Specifically, natalgrass (Rhynchelytrum repens) and Cogan grass ( Imperata cylindrica ), both invasive exotics, have the...stability creates an environment conducive for noxious weeds. If noxious weeds establish, the EA acknowledges that they can be chemically treated

Prescribed Grassland Burning Smoke Emission Measurements in the Northern Flint Hills Region

NASA Astrophysics Data System (ADS)

Wilkins, J. L.; Baker, K. R.; Landis, M.; Aurell, J.; Gullett, B.

2017-12-01

Historically, frequent wildfires were essential for the maintenance of native prairie fire adapted ecosystems. Today prescribed fires are used to control invasive woody species and potentially improve forage production in these same prairie ecosystems for the beef-cattle industry. The emission of primary particulate matter, secondary aerosol, ozone precursors, and air toxics from prescribed grassland burning operations has been implicated as drivers of downwind air quality problems across a multi-state area. A field study has been planned to quantify prescribed burn smoke emissions using both surface and aerial sampling platforms to better constrain emissions rates for organic and inorganic pollutants. Multiple prescribed burns on tallgrass prairie fields in the northern Flint Hills ecoregion are planned for March 2017 at the Konza Prairie Biological Station in Kansas. An array of measurement systems will be deployed to quantify a suite of continuous and integrated air pollution parameters, combustion conditions, meteorological parameters, and plume dynamics to calculate more accurate and condition-specific emission factors that will be used to better predict primary and secondary pollutants both locally and regionally. These emissions measurements will allow for evaluation and improvement of the U.S. Forest Service's Bluesky modeling framework which includes the Fire Emission Production Simulator (FEPS) and Fuel characterization classification system (FCCS). Elucidating grassland prescribed burning emission factors based on fuel type, loading, and environmental conditions is expected to provide an improved understanding of the impact of this land management practice on air quality in the greater Flint Hills region. It is also expected that measurements will be made to help constrain and develop better routines for fire plume rise, vertical allocation, and smoke optical properties.

Unusual hepatic mitochondrial arginase in an Indian air-breathing teleost, Heteropneustes fossilis: purification and characterization.

PubMed

Srivastava, Shilpee; Ratha, B K

2013-02-01

A functional urea cycle with both cytosolic (ARG I) and mitochondrial (ARG II) arginase activity is present in the liver of an ureogenic air-breathing teleost, Heteropneustes fossilis. Antibodies against mammalian ARG II showed no cross-reactivity with the H. fossilis ARG II. ARG II was purified to homogeneity from H. fossilis liver. Purified ARG II showed a native molecular mass of 96 kDa. SDS-PAGE showed a major band at 48 kDa. The native enzyme, therefore, appears to be a homodimer. The pI value of the enzyme was 7.5. The purified enzyme showed maximum activity at pH 10.5 and 55 °C. The K(m) of purified ARG II for l-arginine was 5.25±1.12 mM. L-Ornithine and N(ω)-hydroxy-L-arginine showed mixed inhibition with K(i) values 2.16±0.08 and 0.02±0.004 mM respectively. Mn(+2) and Co(+2) were effective activators of arginase activity. Antibody raised against purified H. fossilis ARG II did not cross-react with fish ARG I, and mammalian ARG I and ARG II. Western blot with the antibodies against purified H. fossilis hepatic ARG II showed cross reactivity with a 96 kDa band on native PAGE and a 48 kDa band on SDS-PAGE. The molecular, immunological and kinetic properties suggest uniqueness of the hepatic mitochondrial ARG II in H. fossilis. Copyright © 2012 Elsevier Inc. All rights reserved.

Palm Reversal Errors in Native-Signing Children with Autism

PubMed Central

Shield, Aaron; Meier, Richard P.

2012-01-01

Children with autism spectrum disorder (ASD) who have native exposure to a sign language such as American Sign Language (ASL) have received almost no scientific attention. This paper reports the first studies on a sample of five native-signing children (four deaf children of deaf parents and one hearing child of deaf parents; ages 4;6 to 7;5) diagnosed with ASD. A domain-general deficit in the ability of children with ASD to replicate the gestures of others is hypothesized to be a source of palm orientation reversal errors in sign. In Study 1, naturalistic language samples were collected from three native-signing children with ASD and were analyzed for errors in handshape, location, movement and palm orientation. In Study 2, four native-signing children with ASD were compared to 12 typically-developing deaf children (ages 3;7 to 6;9, all born to deaf parents) on a fingerspelling task. In both studies children with ASD showed a tendency to reverse palm orientation on signs specified for inward/outward orientation. Typically-developing deaf children did not produce any such errors in palm orientation. We conclude that this kind of palm reversal has a perceptual rather than a motoric source, and is further evidence of a “self-other mapping” deficit in ASD. PMID:22981637

Microbiological contamination of compressed air used in dentistry: an investigation.

PubMed

Conte, M; Lynch, R M; Robson, M G

2001-11-01

The purpose of this preliminary investigation was twofold: 1) to examine the possibility of cross-contamination between a dental-evacuation system and the compressed air used in dental operatories and 2) to capture and identify the most common microflora in the compressed-air supply. The investigation used swab, water, and air sampling that was designed to track microorganisms from the evacuation system, through the air of the mechanical room, into the compressed-air system, and back to the patient. Samples taken in the vacuum system, the air space in the mechanical room, and the compressed-air storage tank had significantly higher total concentrations of bacteria than the outside air sampled. Samples of the compressed air returning to the operatory were found to match the outside air sample in total bacteria. It was concluded that the air dryer may have played a significant role in the elimination of microorganisms from the dental compressed-air supply.

Housing characteristics and indoor air quality in households of Alaska Native children with chronic lung conditions.

PubMed

Singleton, R; Salkoski, A J; Bulkow, L; Fish, C; Dobson, J; Albertson, L; Skarada, J; Kovesi, T; McDonald, C; Hennessy, T W; Ritter, T

2017-03-01

Alaska Native children experience high rates of respiratory infections and conditions. Household crowding, indoor smoke, lack of piped water, and poverty have been associated with respiratory infections. We describe the baseline household characteristics of children with severe or chronic lung disease participating in a 2012-2015 indoor air study. We monitored indoor PM2.5, CO 2 , relative humidity %, temperature, and VOCs and interviewed caregivers about children's respiratory symptoms. We evaluated the association between reported children's respiratory symptoms and indoor air quality indicators using multiple logistic regression analysis. Compared with general US households, study households were more likely overcrowded 73% (62%-82%) vs 3.2% (3.1%-3.3%); had higher woodstove use as primary heat source 16% (9%-25%) vs 2.1% (2.0%-2.2%); and higher proportion of children in a household with a smoker 49% (38%-60%) vs 26.2% (25.5%-26.8%). Median PM2.5 was 33 μg/m 3 . Median CO 2 was 1401 ppm. VOCs were detectable in all homes. VOCs, smoker, primary wood heat, and PM2.5>25 μg/m 3 were associated with higher risk for cough between colds; VOCs were associated with higher risk for wheeze between colds and asthma diagnosis. High indoor air pollutant levels were associated with respiratory symptoms in household children, likely related to overcrowding, poor ventilation, woodstove use, and tobacco smoke. Published 2016. This article is a U.S. Government work and is in the public domain in the USA.

Variation in child body mass index patterns by race/ethnicity and maternal nativity status in the United States and England.

PubMed

Martinson, Melissa L; McLanahan, Sara; Brooks-Gunn, Jeanne

2015-02-01

This paper examines body mass index (BMI) trajectories among children from different race/ethnic and maternal nativity backgrounds in the United States and England from early- to middle-childhood. This study is the first to examine race/ethnic and maternal nativity differences in BMI trajectories in both countries. We use two longitudinal birth cohort studies-The Fragile Families and Child Wellbeing Study (n = 3,285) for the United States and the Millennium Cohort Study (n = 6,700) for England to estimate trajectories in child BMI by race/ethnicity and maternal nativity status using multilevel growth models. In the United States our sample includes white, black, and Hispanic children; in England the sample includes white, black, and Asian children. We find significant race/ethnic differences in the initial BMI and BMI trajectories of children in both countries, with all non-white groups having significantly steeper BMI growth trajectories than whites. Nativity differences in BMI trajectories vary by race/ethnic group and are only statistically significantly higher for children of foreign-born blacks in England. Disparities in BMI trajectories are pervasive in the United States and England, despite lower overall BMI among English children. Future studies should consider both race/ethnicity and maternal nativity status subgroups when examining disparities in BMI in the United States and England. Differences in BMI are apparent in early childhood, which suggests that interventions targeting pre-school age children may be most effective at stemming childhood disparities in BMI.

Diagnosing AIRS Sampling with CloudSat Cloud Classes

NASA Technical Reports Server (NTRS)

Fetzer, Eric; Yue, Qing; Guillaume, Alexandre; Kahn, Brian

2011-01-01

AIRS yield and sampling vary with cloud state. Careful utilization of collocated multiple satellite sensors is necessary. Profile differences between AIRS and ECMWF model analyses indicate that AIRS has high sampling and excellent accuracy for certain meteorological conditions. Cloud-dependent sampling biases may have large impact on AIRS L2 and L3 data in climate research. MBL clouds / lower tropospheric stability relationship is one example. AIRS and CloudSat reveal a reasonable climatology in the MBL cloud regime despite limited sampling in stratocumulus. Thermodynamic parameters such as EIS derived from AIRS data map these cloud conditions successfully. We are working on characterizing AIRS scenes with mixed cloud types.

Elemental levels in tree-bark and epiphytic-lichen transplants at a mixed environment in mainland Portugal, and comparisons with an in situ lichen.

PubMed

Pacheco, A M G; Freitas, M C; Baptista, M S; Vasconcelos, M T S D; Cabral, J P

2008-01-01

Samples of Platanus hybrida Brot. bark and Flavoparmelia caperata (L.) Hale thalli, from a clean area in northern Portugal (Baião), were transplanted into an exposure location at the south-western Atlantic coast, impacted by urban-industrial emissions (Sines), for a 10-month long experiment. Bark pieces were confined into nylon bags (2-mm mesh), and lichen thalli kept with their bark substrate (Pinus pinaster (Ait.) Sol.). Every two months, a double set of transplants (one for bark, one for lichens) was brought back into the laboratory, together with native samples of Evernia prunastri (L.) Ach. Following suitable cleansing and preparation procedures, field samples were put through INAA for elemental assessment. The results indicate that, regardless of signal magnitude, (1) concentrations in bark and lichen transplants are significantly correlated with atmospheric deposition for an appreciable number of elements; (2) there are a number of significant correlations between transplanted and native samples, and again between the latter and the deposition; and (3) the elements with biological patterns that follow the deposition in either transplanted or native samples (Co, V) are the very ones whose bioaccumulation seems to benefit from an alternation of wet-dry periods, which fits the precipitation record of the test site during the exposure term.

Technical Report Interchange Through Synchronized OAI Caches

NASA Technical Reports Server (NTRS)

Liu, Xiaming; Maly, Kurt; Zubair, Mohammad; Tang, Rong; Padshah, Mohammad Imran; Roncaglia, George; Rocker, JoAnne; Nelson, Michael; vonOfenheim, William; Luce, Richard

2002-01-01

The Technical Report Interchange project is a cooperative experimental effort between NASA Langley Research Center, Los Alamos National Laboratory, Air Force Research Laboratory, Sandia National Laboratory and Old Dominion University to allow for the integration of technical reports. This is accomplished using the Open Archives Initiative Protocol for Metadata Harvesting (OAI-PMH) and having each site cache the metadata from the other participating sites. Each site also implements additional software to ingest the OAI-PMH harvested metadata into their native digital library (DL). This allows the users at each site to see an increased technical report collection through the familiar DL interfaces and tale advantage of whatever valued added are provided by the native DL.

Nitrous Oxide Reductase (nosZ) Gene Fragments Differ between Native and Cultivated Michigan Soils

PubMed Central

Stres, Blaž; Mahne, Ivan; Avguštin, Gorazd; Tiedje, James M.

2004-01-01

The effect of standard agricultural management on the genetic heterogeneity of nitrous oxide reductase (nosZ) fragments from denitrifying prokaryotes in native and cultivated soil was explored. Thirty-six soil cores were composited from each of the two soil management conditions. nosZ gene fragments were amplified from triplicate samples, and PCR products were cloned and screened by restriction fragment length polymorphism (RFLP). The total nosZ RFLP profiles increased in similarity with soil sample size until triplicate 3-g samples produced visually identical RFLP profiles for each treatment. Large differences in total nosZ profiles were observed between the native and cultivated soils. The fragments representing major groups of clones encountered at least twice and four randomly selected clones with unique RFLP patterns were sequenced to verify nosZ identity. The sequence diversity of nosZ clones from the cultivated field was higher, and only eight patterns were found in clone libraries from both soils among the 182 distinct nosZ RFLP patterns identified from the two soils. A group of clones that comprised 32% of all clones dominated the gene library of native soil, whereas many minor groups were observed in the gene library of cultivated soil. The 95% confidence intervals of the Chao1 nonparametric richness estimator for nosZ RFLP data did not overlap, indicating that the levels of species richness are significantly different in the two soils, the cultivated soil having higher diversity. Phylogenetic analysis of deduced amino acid sequences grouped the majority of nosZ clones into an interleaved Michigan soil cluster whose cultured members are α-Proteobacteria. Only four nosZ sequences from cultivated soil and one from the native soil were related to sequences found in γ-Proteobacteria. Sequences from the native field formed a distinct, closely related cluster (Dmean = 0.16) containing 91.6% of the native clones. Clones from the cultivated field were more distantly related to each other (Dmean = 0.26), and 65% were found outside of the cluster from the native soil, further indicating a difference in the two communities. Overall, there appears to be a relationship between use and richness, diversity, and the phylogenetic position of nosZ sequences, indicating that agricultural use of soil caused a shift to a more diverse denitrifying community. PMID:14711656

Evaluation of Legionella Air Contamination in Healthcare Facilities by Different Sampling Methods: An Italian Multicenter Study.

PubMed

Montagna, Maria Teresa; De Giglio, Osvalda; Cristina, Maria Luisa; Napoli, Christian; Pacifico, Claudia; Agodi, Antonella; Baldovin, Tatjana; Casini, Beatrice; Coniglio, Maria Anna; D'Errico, Marcello Mario; Delia, Santi Antonino; Deriu, Maria Grazia; Guida, Marco; Laganà, Pasqualina; Liguori, Giorgio; Moro, Matteo; Mura, Ida; Pennino, Francesca; Privitera, Gaetano; Romano Spica, Vincenzo; Sembeni, Silvia; Spagnolo, Anna Maria; Tardivo, Stefano; Torre, Ida; Valeriani, Federica; Albertini, Roberto; Pasquarella, Cesira

2017-06-22

Healthcare facilities (HF) represent an at-risk environment for legionellosis transmission occurring after inhalation of contaminated aerosols. In general, the control of water is preferred to that of air because, to date, there are no standardized sampling protocols. Legionella air contamination was investigated in the bathrooms of 11 HF by active sampling (Surface Air System and Coriolis ® μ) and passive sampling using settling plates. During the 8-hour sampling, hot tap water was sampled three times. All air samples were evaluated using culture-based methods, whereas liquid samples collected using the Coriolis ® μ were also analyzed by real-time PCR. Legionella presence in the air and water was then compared by sequence-based typing (SBT) methods. Air contamination was found in four HF (36.4%) by at least one of the culturable methods. The culturable investigation by Coriolis ® μ did not yield Legionella in any enrolled HF. However, molecular investigation using Coriolis ® μ resulted in eight HF testing positive for Legionella in the air. Comparison of Legionella air and water contamination indicated that Legionella water concentration could be predictive of its presence in the air. Furthermore, a molecular study of 12 L. pneumophila strains confirmed a match between the Legionella strains from air and water samples by SBT for three out of four HF that tested positive for Legionella by at least one of the culturable methods. Overall, our study shows that Legionella air detection cannot replace water sampling because the absence of microorganisms from the air does not necessarily represent their absence from water; nevertheless, air sampling may provide useful information for risk assessment. The liquid impingement technique appears to have the greatest capacity for collecting airborne Legionella if combined with molecular investigations.

Evaluation of Legionella Air Contamination in Healthcare Facilities by Different Sampling Methods: An Italian Multicenter Study

PubMed Central

Montagna, Maria Teresa; De Giglio, Osvalda; Cristina, Maria Luisa; Napoli, Christian; Pacifico, Claudia; Agodi, Antonella; Baldovin, Tatjana; Casini, Beatrice; Coniglio, Maria Anna; D’Errico, Marcello Mario; Delia, Santi Antonino; Deriu, Maria Grazia; Guida, Marco; Laganà, Pasqualina; Liguori, Giorgio; Moro, Matteo; Mura, Ida; Pennino, Francesca; Privitera, Gaetano; Romano Spica, Vincenzo; Sembeni, Silvia; Spagnolo, Anna Maria; Tardivo, Stefano; Torre, Ida; Valeriani, Federica; Albertini, Roberto; Pasquarella, Cesira

2017-01-01

Healthcare facilities (HF) represent an at-risk environment for legionellosis transmission occurring after inhalation of contaminated aerosols. In general, the control of water is preferred to that of air because, to date, there are no standardized sampling protocols. Legionella air contamination was investigated in the bathrooms of 11 HF by active sampling (Surface Air System and Coriolis®μ) and passive sampling using settling plates. During the 8-hour sampling, hot tap water was sampled three times. All air samples were evaluated using culture-based methods, whereas liquid samples collected using the Coriolis®μ were also analyzed by real-time PCR. Legionella presence in the air and water was then compared by sequence-based typing (SBT) methods. Air contamination was found in four HF (36.4%) by at least one of the culturable methods. The culturable investigation by Coriolis®μ did not yield Legionella in any enrolled HF. However, molecular investigation using Coriolis®μ resulted in eight HF testing positive for Legionella in the air. Comparison of Legionella air and water contamination indicated that Legionella water concentration could be predictive of its presence in the air. Furthermore, a molecular study of 12 L. pneumophila strains confirmed a match between the Legionella strains from air and water samples by SBT for three out of four HF that tested positive for Legionella by at least one of the culturable methods. Overall, our study shows that Legionella air detection cannot replace water sampling because the absence of microorganisms from the air does not necessarily represent their absence from water; nevertheless, air sampling may provide useful information for risk assessment. The liquid impingement technique appears to have the greatest capacity for collecting airborne Legionella if combined with molecular investigations. PMID:28640202

Assessing Pronunciation in an EFL Context: Teachers' Orientations towards Nativeness and Intelligibility

ERIC Educational Resources Information Center

Bøhn, Henrik; Hansen, Thomas

2017-01-01

This study investigated EFL teachers' orientations toward the assessment of pronunciation at the upper-secondary school level in Norway. Data were gathered from purposeful samples of 24 interview informants and 46 questionnaire respondents. The teachers were asked about their attitudes toward the assessment of nativeness and intelligibility,…

Quantifying soil profile change caused by land use in central Missouri loess hillslopes

Treesearch

Samuel J. Indorante; John M. Kabrick; Brad D. Lee; Jon M. Maatta

2014-01-01

Three major challenges are present when studying anthropogenic impacts on soil profile properties: (i) site selection; (ii) sampling and modeling native and cultivated soil-landscape relationships; and (iii) graphically and statistically comparing native and cultivated sites to model soil profile changes. This study addressed those challenges by measuring and modeling...

Shiga toxins, and the genes encoding them, in fecal samples from native Idaho ungulates.

PubMed

Gilbreath, Jeremy J; Shields, Malcolm S; Smith, Rebekah L; Farrell, Larry D; Sheridan, Peter P; Spiegel, Kathleen M

2009-02-01

Cattle are a known reservoir of Shiga toxin-producing Escherichia coli. The prevalence and stability of Shiga toxin and/or Shiga toxin genes among native wild ungulates in Idaho were investigated. The frequency of both Shiga genes and toxin was similar to that reported for Idaho cattle ( approximately 19%).

The Interstate Migration of U.S. Immigrants: Individual and Contextual Determinants.

ERIC Educational Resources Information Center

Gurak, Douglas T.; Kritz, Mary M.

2000-01-01

Analysis of the 1990 Public Use Microdata Sample indicates that interstate migration during 1985-90 was less common for immigrant men than for non-Hispanic, White, native-born men. This difference was most strongly related to human capital factors (age, education, self-employment), followed by social capital factors (nativity group concentration)…

Young Learners' Response Processes When Taking Computerized Tasks for Speaking Assessment

ERIC Educational Resources Information Center

Lee, Shinhye; Winke, Paula

2018-01-01

We investigated how young language learners process their responses on and perceive a computer-mediated, timed speaking test. Twenty 8-, 9-, and 10-year-old non-native English-speaking children (NNSs) and eight same-aged, native English-speaking children (NSs) completed seven computerized sample TOEFL® Primary™ speaking test tasks. We investigated…

Native and sodium dodecyl sulfate-capillary gel electrophoresis of proteins on a single microchip.

PubMed

Tsai, Shuo-Wen; Loughran, Michael; Suzuki, Hiroaki; Karube, Isao

2004-02-01

Simultaneous electrophoresis of both native and Sodium dodecyl sulfate (SDS) proteins was observed on a single microchip within 20 min. The capillary array prevented lateral diffusion of SDS components and avoided cross contamination of native protein samples. The planar sputtered electrode format provided a more uniform distribution of separation voltage into each of the 36 parallel microchannel capillaries than platinum wire electrodes commonly used in conventional electrophoresis. The customized geometry of the stacking capillary machined into the cover plate of the microchip facilitated reproducible sample injection without the requirement for stacking gel. Polyimide served as a mask and facilitated insulation of the anode and cathode to prevent electrode lift off and deterioration during continuous electrophoresis, even at a constant current of 8 mA. Improved protein separation was observed during capillary electrophoresis at lower currents. Ferguson plot analysis confirmed the electrophoretic mobility of native globular proteins in accordance with their charge and size. Corresponding Ferguson plot analysis of SDS-associated proteins on the same chip confirmed separation of marker proteins according to their molecular weight.

PGE abundance and Re-Os isotope Systematics of Native-Fe-Bearing Basaltic Rocks and Their Carbonaceous Crustal Contaminants: Insights into magma plumbing-system dynamics in LIPs

NASA Astrophysics Data System (ADS)

Howarth, G. H.; Day, J. M.; Goodrich, C. A.; Pernet-Fisher, J.; Pearson, D. G.; Taylor, L. A.

2014-12-01

Native-Fe grains form in basaltic melts at highly reducing conditions (

Herpetofaunal Community Change in Multiple Habitats after Fifteen Years in a Southwest Florida Preserve, USA

PubMed Central

Cassani, John R.; Croshaw, Dean A.; Bozzo, Joseph; Brooks, Brenda; Everham, Edwin M.; Ceilley, David W.; Hanson, Deborah

2015-01-01

Herpetofaunal declines have been documented globally, and southern Florida, USA, is an especially vulnerable region because of high impacts from hydrological perturbations and nonindigenous species. To assess the extent of recent change in herpetofauna community composition, we established a baseline inventory during 1995-97 at a managed preserve in a habitat rich area of southwest Florida, and repeated our sampling methods fifteen years later (2010-11). Nine drift fence arrays were placed in four habitat types: mesic flatwood, mesic hammock, depression marsh, and wet prairie. Trapping occurred daily for one week during 7-8 sampling runs in each period (57 and 49 total sampling days, respectively). Species richness was maintained in mesic hammock habitats but varied in the others. Catch rates of several native species (Anaxyrus terrestris, Lithobates grylio, Anolis carolinensis, Nerodia fasciata) declined significantly. Other native species (Lithobates sphenocephalus, Siren lacertian, and Notophthalmus viridescens piaropicola) that were abundant in 1995-97 declined by greater than 50%. Catch rate of only two species (the nonindigenous Anolis sagrei and the native Diadophis punctatus) increased significantly. Hierarchical cluster analysis indicated similarity within habitat types but significant dissimilarity between sampling periods, confirming shifts in community composition. Analysis of individual species’ contributions to overall similarity across habitats shows a shift from dominance of native species in the 1990s to increased importance of nonindigenous species in 2010-11. Although natural population fluctuations may have influenced differences between the two sampling periods, our results suggest considerable recent change in the structure and composition of this southwest Florida herpetofaunal community. The causes are unknown, but hydrological shifts and ecological impacts of nonindigenous species may have contributed. PMID:26016475

The challenge of regional accents for aviation English language proficiency standards: a study of difficulties in understanding in air traffic control-pilot communications.

PubMed

Tiewtrakul, T; Fletcher, S R

2010-02-01

Although English has been the international aviation language since 1951, formal language proficiency testing for key aviation personnel has only recently been implemented by the International Civil Aviation Organization (ICAO). It aims to ensure minimum acceptable levels of English pronunciation and comprehension universally, but does not attend to particular regional dialect difficulties. However, evidence suggests that voice transmissions between air traffic controllers and pilots are a particular problem in international airspace and that pilots may not understand messages due to the influence of different accents when using English. This study explores the potential impact of 'non-native English' in pilot-air traffic control transmissions using a 'conversation analysis' technique to examine approach phase recordings from Bangkok International Airport. Results support that communication errors, defined by incidents of pilots not understanding, occur significantly more often when speakers are both non-native English, messages are more complex and when numerical information is involved. These results and their possible implications are discussed with reference to the development of ICAO's new language proficiency standards. Statement of Relevance: This study builds on previous work and literature, providing further evidence to show that the risks caused by language and linguistics in aviation must be explored more deeply. Findings are particularly contemporary and relevant today, indicating that recently implemented international standards would benefit from further exploratory research and development.

Biobriefcase aerosol collector

DOEpatents

Bell, Perry M [Tracy, CA; Christian, Allen T [Madison, WI; Bailey, Christopher G [Pleasanton, CA; Willis, Ladona [Manteca, CA; Masquelier, Donald A [Tracy, CA; Nasarabadi, Shanavaz L [Livermore, CA

2009-09-22

A system for sampling air and collecting particles entrained in the air that potentially include bioagents. The system comprises providing a receiving surface, directing a liquid to the receiving surface and producing a liquid surface. Collecting samples of the air and directing the samples of air so that the samples of air with particles entrained in the air impact the liquid surface. The particles potentially including bioagents become captured in the liquid. The air with particles entrained in the air impacts the liquid surface with sufficient velocity to entrain the particles into the liquid but cause minor turbulence. The liquid surface has a surface tension and the collector samples the air and directs the air to the liquid surface so that the air with particles entrained in the air impacts the liquid surface with sufficient velocity to entrain the particles into the liquid, but cause minor turbulence on the surface resulting in insignificant evaporation of the liquid.

Development and testing of a portable wind sensitive directional air sampler

NASA Technical Reports Server (NTRS)

Deyo, J.; Toma, J.; King, R. B.

1975-01-01

A portable wind sensitive directional air sampler was developed as part of an air pollution source identification system. The system is designed to identify sources of air pollution based on the directional collection of field air samples and their analysis for TSP and trace element characteristics. Sources can be identified by analyzing the data on the basis of pattern recognition concepts. The unit, designated Air Scout, receives wind direction signals from an associated wind vane. Air samples are collected on filter slides using a standard high volume air sampler drawing air through a porting arrangement which tracks the wind direction and permits collection of discrete samples. A preset timer controls the length of time each filter is in the sampling position. At the conclusion of the sampling period a new filter is automatically moved into sampling position displacing the previous filter to a storage compartment. Thus the Air Scout may be set up at a field location, loaded with up to 12 filter slides, and left to acquire air samples automatically, according to the wind, at any timer interval desired from 1 to 30 hours.

Distribution and status of five non-native fish species in the Tampa Bay drainage (USA), a hot spot for fish introductions

USGS Publications Warehouse

Lawson, Katelyn M.; Tuckett, Quenton M.; Ritch, Jared L.; Nico, Leo; Fuller, Pam; Matheson, Richard E.; Hill, Jeffrey E.

2017-01-01

The Tampa Bay region of Florida (USA) is a hot spot for non-native freshwater fishes. However, published information on most non-native fishes in the basin is not current. Systematic sampling efforts targeting non-native fishes in the region were conducted from 2013–2015 by the University of Florida Tropical Aquaculture Laboratory. Data from these recent surveys were analyzed, along with historic and new data from published and unpublished sources, to assess current fish distributions and determine status. We focus on five of the non-native species sampled: pike killifish Belonesox belizanus Kner, 1860, green swordtail Xiphophorus hellerii Heckel, 1848, southern platyfish Xiphophorus maculatus (Günther, 1866), Mayan cichlid Mayaheros urophthalmus (Günther, 1862), and Jack Dempsey Rocio octofasciata (Regan, 1903). All five were found to have reproducing populations in the basin, each showing broader distributions than previously indicated. Non-native populations of four of the species have persisted in the Tampa Bay region since at least the 1990s. In contrast, the presence of Mayan cichlid in the basin was not confirmed until 2004. Based on numbers, distributions, and years of persistence, these five species all maintain established populations. Pike killifish and Mayan cichlid are established and spreading throughout multiple habitat types, while green swordtail, southern platyfish, and Jack Dempsey are localized and found primarily in more marginal habitats (e.g., small ditches and first order tributary streams). Factors affecting continued existence and distributions likely include aquaculture, biotic resistance, and thermal and salinity tolerances. We also clarify non-native species status determination using a multi-agency collaborative approach, and reconcile differences in terminology usage and interpretation.

Clonal growth: invasion or stability? A comparative study of clonal architecture and diversity in native and introduced lineages of Phragmites australis (Poaceae).

PubMed

Douhovnikoff, Vladimir; Hazelton, Eric L G

2014-09-01

• The characteristics of clonal growth that are advantageous in invasive plants can also result in native plants' ability to resist invasion. In Maine, we compared the clonal architecture and diversity of an invasive lineage (introduced Phragmites) and a noninvasive lineage (native Phragmites) present in much of North America. This study is the first on stand-scale diversity using a sample size and systematic spatial-sampling scheme adequate for characterizing clonal structure in Phragmites. Our questions included: (1) Does the structure and extent of clonal growth suggest that the potential for clonal growth contributes to the invasiveness of the introduced lineage? (2) Is clonal growth common in the native lineage, acting as a possible source of ecological resistance and resilience?• Microsatellite markers were used to measure clonal sizes, architecture, and diversity within each lineage in stands within four marshes in Maine.• Clonal diversity measures indicated that clonal growth was significantly greater in stands of the native lineage than in the introduced. While lineage was a consistent predictor of clonal diversity relative ranking, the marsh location was a much stronger predictor of the absolute range of these values.• Our results indicate an important role for clonal growth in the space consolidation of native Phragmites and could explain why the introduced lineage, with stronger competitive traits, has not replaced the native where they co-occur. These results with regard to clone size, size distributions, singleton occurrence, and clonal architecture provide some evidence for stand development that follows a genotypic initial floristics model. © 2014 Botanical Society of America, Inc.

Use of a Corona Discharge to Selectively Pattern a Hydrophilic/Hydrophobic Interface for Integrating Segmented Flow with Microchip Electrophoresis and Electrochemical Detection

PubMed Central

Filla, Laura A.; Kirkpatrick, Douglas C.; Martin, R. Scott

2011-01-01

Segmented flow in microfluidic devices involves the use of droplets that are generated either on- or off-chip. When used with off-chip sampling methods, segmented flow has been shown to prevent analyte dispersion and improve temporal resolution by periodically surrounding an aqueous flow stream with an immiscible carrier phase as it is transferred to the microchip. To analyze the droplets by methods such as electrochemistry or electrophoresis, a method to “desegment” the flow into separate aqueous and immiscible carrier phase streams is needed. In this paper, a simple and straightforward approach for this desegmentation process was developed by first creating an air/water junction in natively hydrophobic and perpendicular PDMS channels. The air-filled channel was treated with a corona discharge electrode to create a hydrophilic/hydrophobic interface. When a segmented flow stream encounters this interface, only the aqueous sample phase enters the hydrophilic channel, where it can be subsequently analyzed by electrochemistry or microchip-based electrophoresis with electrochemical detection. It is shown that the desegmentation process does not significantly degrade the temporal resolution of the system, with rise times as low as 12 s reported after droplets are recombined into a continuous flow stream. This approach demonstrates significant advantages over previous studies in that the treatment process takes only a few minutes, fabrication is relatively simple, and reversible sealing of the microchip is possible. This work should enable future studies where off-chip processes such as microdialysis can be integrated with segmented flow and electrochemical-based detection. PMID:21718004

Parasites of native and exotic freshwater fishes in south-western Australia.

PubMed

Lymbery, A J; Hassan, M; Morgan, D L; Beatty, S J; Doupé, R G

2010-05-01

In this study, 1429 fishes of 18 different species (12 native and six exotic) were sampled from 29 localities to compare the levels of parasitism between native and exotic fish species and to examine the relationship between environmental degradation and parasite diversity. Forty-four putative species of parasites were found and most of these appear to be native parasites, which have not previously been described. Two parasite species, Lernaea cyprinacea and Ligula intestinalis, are probably introduced. Both were found on or in a range of native fish species, where they may cause severe disease. Levels of parasitism and parasite diversity were significantly greater in native fishes than in exotic species, and this may contribute to an enhanced demographic performance and competitive ability in invading exotics. Levels of parasitism and parasite diversity in native fishes were negatively related to habitat disturbance, in particular to a suite of factors that indicate increased human use of the river and surrounding environment. This was due principally to the absence in more disturbed habitats of a number of species of endoparasites with complex life cycles, involving transmission between different host species.

Sociocultural Influences on Gambling and Alcohol Use Among Native Americans in the United States

PubMed Central

Patterson, David A.; Welte, John W.; Barnes, Grace M.; Tidwell, Marie-Cecile O.; Spicer, Paul

2014-01-01

Gambling opportunities on and near Native American lands have increased in recent decades; yet there is a lack of research examining the patterns of problem gambling and alcohol abuse among Native Americans in the US. Traditional Native American cultural identity may be a protective factor for problem gambling and alcohol abuse among Native Americans. Telephone interviews were conducted with 415 Native American adults aged 18 years and older across the US. The past-year prevalence of gambling among Native Americans is similar to the rate for non-Native Americans in the US (80 vs. 77 %). However, Native Americans have over twice the rate of problem gambling as the US sample (18 vs. 8 %). Although Native Americans have a lower rate of past-year alcohol use than the US population (47 vs. 68 %), they have a somewhat higher rate of alcohol abuse than their US counterparts (5.5 vs. 4.3 %). Logistic regression analysis, with problem gambling as the dependent variable, revealed that lower socioeconomic status is significantly associated with an increased odds of problem gambling for Native Americans. Counter to the hypothesis, the higher the score on the Native American orientation, the higher the odds of being a problem gambler. Further, living by the “White way of life” was associated with a decreased odds of being a problem gambler; and perceived gambling convenience was associated with an increased odds of being a problem gambler. None of the Native American factors was significant in predicting alcohol abuse. These findings highlight the need for further investigation into the influence of cultural factors on Native American gambling. PMID:25408467

Effects of different agricultural systems on soil quality in Northern Limón province, Costa Rica.

PubMed

Cornwell, Emma

2014-09-01

Conversion of native rainforest ecosystems in Limón Province of Costa Rica to banana and pineapple monoculture has led to reductions in biodiversity and soil quality. Agroforestry management of cacao (Theobroma cacao) is an alternative system that may maintain the agricultural livelihood of the region while more closely mimicking native ecosystems. This study compared physical, biological and chemical soil quality indicators of a cacao plantation under organic agroforestry management with banana, pineapple, and pasture systems; a native forest nearby served as a control. For bulk density and earthworm analysis, 18 samples were collected between March and April 2012 from each ecosystem paired with 18 samples from the cacao. Cacao had a lower bulk density than banana and pineapple monocultures, but greater than the forest (p < 0.05). Cacao also hosted a greater number and mass of earthworms than banana and pineapple (p < 0.05), but similar to forest and pasture. For soil chemical characteristics, three composite samples were collected in March 2012 from each agroecosystem paired with three samples from the cacao plantation. Forest and pineapple ecosystems had the lowest pH, cation exchange capacity, and exchangeable nutrient cations, while cacao had the greatest (p < 0.05). Total nutrient levels of P and N were slightly greater in banana, pineapple and pasture than in cacao; probably related to addition of chemical fertilizer and manure from cattle grazing. Forest and cacao also had greater %C, than other ecosystems, which is directly related to soil organic matter content (p < 0.0001). Overall, cacao had more favorable physical, biological and chemical soil characteristics than banana and pineapple monocultures, while trends were less conclusive compared to the pastureland. While organic cacao was inferior to native forest in some soil characteristics such as bulk density and organic carbon, its soil quality did best mimic that of the native forest. This supports the organic cultivation of cacao as a desirable alternative to banana and pineapple monoculture.

Pacific Island landbird monitoring annual report, Haleakalā National Park, 2012

USGS Publications Warehouse

Judge, Seth W.; Camp, Richard J.; Hart, Patrick J.

2013-01-01

Haleakalā National Park (HALE) was surveyed for landbirds and habitat characteristics from March 20 through July 26, 2012. This information provides data in the time-series of landbird monitoring for long-term trends in forest bird distribution, density, and abundance. The Kīpahulu District of eastern Haleakalā Volcano was surveyed using point-transect distance sampling to estimate bird abundance. We surveyed 160 stations and detected a total of 2,830 birds from 12 species. Half of the species were native and half were non-native. Numbers of detections per species ranged from 1 to 849. There were sufficient detections of seven species to allow density estimation. Āpapane (Himatione sanguinea) was the most widely distributed and abundant native species detected in the survey. ‘Alauahio (Paroreomyza montana newtoni), Maui ‘Amakihi (Hemignathus virens wilsoni), and I‘iwi (Vestiaria coccinea) were widespread and occurred in relatively modest densities. Only eight Kiwikiu (Pseudonestor xanthophrys) and 20 ‘Ākohekohe (Palmeria dolei) were detected and were restricted to high elevation wet forest. We estimated an abundance of 495 ± 261individuals of Kiwikiu in a 2,036 ha inference area which likely includes the entire suitable habitat for this species in HALE. For ‘Ākohekohe, we estimated an abundance of 1,150 ± 389 individuals in the 1,458 ha inference area. There was a strong representation of non-native landbirds in the survey area. The Japanese White-eye (Zosterops japonicus), Japanese Bush-warbler (Cettia diphone), and Red-billed Leiothrix (Leiothrix lutea) accounted for nearly half of all landbird detections. Each species was common in predominantly native forests. Vegetation and topographic characteristics were recorded on 160 landbird monitoring stations. HALE canopy and understory composition was predominantly native, especially at elevations above 1,100 m. Much of the forest canopy was comprised of `ohi`a (Metrosideros polymorpha) interspersed with mature olapa (Cheirodendron platyphyllum). This canopy class occurred at 92.5% of the stations surveyed. More than three-quarters (77.5%) of the monitoring stations had a dense canopy with most crowns interlocking (> 60% cover). More than half (52%) of the stations surveyed had trees taller than 10 m, while almost a third (31%) had trees 5-10 m. Only 17% of the stations had a canopy shorter than 5 m. The native shrubs Vaccinium calycinum, Broussaisia arguta, and Leptecophylla tameiameae were the most common understory plants recorded, occurring at more than 30% of the stations sampled. Native mosses and ferns were also common at stations, occurring at more than 90% of the stations sampled. The invasive Psidium cattleainum, Clidemia hirta, and Hedychium gardnerianum occurred at approximately 14% of the stations sampled, predominantly at elevations below 1,100 m.

Phenolic Profiling and Antioxidant Capacity of Eugenia uniflora L. (Pitanga) Samples Collected in Different Uruguayan Locations

PubMed Central

Baenas, Nieves; Gironés-Vilaplana, Amadeo; Cesio, María Verónica; Heinzen, Horacio

2018-01-01

The use of nutrient-rich foods to enhance the wellness, health and lifestyle habits of consumers is globally encouraged. Native fruits are of great interest as they are grown and consumed locally and take part of the ethnobotanic knowledge of the population. Pitanga is an example of a native fruit from Uruguay, consumed as a jelly or an alcoholic beverage. Pitanga has a red-violet pigmentation, which is a common trait for foods that are a good source of antioxidants. Hence, fruits from different Uruguayan regions were analyzed via miniaturized sample preparation method, HPLC-DAD-ESI/MSn and RP-HPLC-DAD techniques to identify and quantify phenolic compounds, respectively. The antioxidant capacity was evaluated via DPPH and ORAC (Oxygen Radical Absorbance Capacity) assays. A multivariate linear regression was applied to correlate the observed antioxidant capacity with the phenolic content. Furthermore, Principal Components Analysis was performed to highlight characteristics between the various samples studied. The main results indicated differences between northern and southern Uruguayan samples. Delphinidin-3-hexoside was present in southern samples (mean of 293.16 µmol/100 g dry weight (DW)) and absent in the sample collected in the north (sample 3). All the samples contain high levels of cyanidin-3-hexoside, but a noticeable difference was found between the northern sample (150.45 µmol/100 g DW) and the southern sample (1121.98 µmol/100 g DW). The antioxidant capacity (mean ORAC of 56370 µmol Trolox®/100 g DW) were high in all the samples compared to the Food and Drug Administration (FDA) database of similar berry-fruits. The results of this study highlight the nutraceutical value of a native fruit that has not been exploited until now. PMID:29695116

Phenolic Profiling and Antioxidant Capacity of Eugenia uniflora L. (Pitanga) Samples Collected in Different Uruguayan Locations.

PubMed

Migues, Ignacio; Baenas, Nieves; Gironés-Vilaplana, Amadeo; Cesio, María Verónica; Heinzen, Horacio; Moreno, Diego A

2018-04-24

The use of nutrient-rich foods to enhance the wellness, health and lifestyle habits of consumers is globally encouraged. Native fruits are of great interest as they are grown and consumed locally and take part of the ethnobotanic knowledge of the population. Pitanga is an example of a native fruit from Uruguay, consumed as a jelly or an alcoholic beverage. Pitanga has a red-violet pigmentation, which is a common trait for foods that are a good source of antioxidants. Hence, fruits from different Uruguayan regions were analyzed via miniaturized sample preparation method, HPLC-DAD-ESI/MS n and RP-HPLC-DAD techniques to identify and quantify phenolic compounds, respectively. The antioxidant capacity was evaluated via DPPH and ORAC (Oxygen Radical Absorbance Capacity) assays. A multivariate linear regression was applied to correlate the observed antioxidant capacity with the phenolic content. Furthermore, Principal Components Analysis was performed to highlight characteristics between the various samples studied. The main results indicated differences between northern and southern Uruguayan samples. Delphinidin-3-hexoside was present in southern samples (mean of 293.16 µmol/100 g dry weight (DW)) and absent in the sample collected in the north (sample 3). All the samples contain high levels of cyanidin-3-hexoside, but a noticeable difference was found between the northern sample (150.45 µmol/100 g DW) and the southern sample (1121.98 µmol/100 g DW). The antioxidant capacity (mean ORAC of 56370 µmol Trolox ® /100 g DW) were high in all the samples compared to the Food and Drug Administration (FDA) database of similar berry-fruits. The results of this study highlight the nutraceutical value of a native fruit that has not been exploited until now.

Determining baselines and variability of elements in plants and soils near the Kenai National Wildlife Refuge, Alaska

USGS Publications Warehouse

Crock, J.G.; Severson, R.C.; Gough, L.P.

1992-01-01

Recent investigations on the Kenai Peninsula had two major objectives: (1) to establish elemental baseline concentrations ranges for native vegetation and soils; and, (2) to determine the sampling density required for preparing stable regional geochemical maps for various elements in native plants and soils. These objectives were accomplished using an unbalanced, nested analysis-of-variance (ANOVA) barbell sampling design. Hylocomium splendens (Hedw.) BSG (feather moss, whole plant), Picea glauca (Moench) Voss (white spruce, twigs and needles), and soil horizons (02 and C) were collected and analyzed for major and trace total element concentrations. Using geometric means and geometric deviations, expected baseline ranges for elements were calculated. Results of the ANOVA show that intensive soil or plant sampling is needed to reliably map the geochemistry of the area, due to large local variability. For example, producing reliable element maps of feather moss using a 50 km cell (at 95% probability) would require sampling densities of from 4 samples per cell for Al, Co, Fe, La, Li, and V, to more than 15 samples per cell for Cu, Pb, Se, and Zn.Recent investigations on the Kenai Peninsula had two major objectives: (1) to establish elemental baseline concentrations ranges for native vegetation and soils; and, (2) to determine the sampling density required for preparing stable regional geochemical maps for various elements in native plants and soils. These objectives were accomplished using an unbalanced, nested analysis-of-variance (ANOVA) barbell sampling design. Hylocomium splendens (Hedw.) BSG (feather moss, whole plant), Picea glauca (Moench) Voss (white spruce, twigs and needles), and soil horizons (02 and C) were collected and analyzed for major and trace total element concentrations. Using geometric means and geometric deviations, expected baseline ranges for elements were calculated. Results of the ANOVA show that intensive soil or plant sampling is needed to reliably map the geochemistry of the area, due to large local variability. For example, producing reliable element maps of feather moss using a 50 km cell (at 95% probability) would require sampling densities of from 4 samples per cell Al, Co, Fe, La, Li, and V, to more than 15 samples per cell for Cu, Pb, Se, and Zn.

Investigations of magnetic micrometeorites in sediments by thermomagnetic and microscopic analysis.

NASA Astrophysics Data System (ADS)

Kuzina, Diliara; Nurgaliev, Danis; Pechersky, Diamar; Tsel'movich, Vladimir

2016-04-01

The thermomagnetic and microprobe analyses were done for sedimentary samples from the highland Darhad Basin located in northern Mongolia; from the southwest of the Baikal Rift Zone and sedimentary samples from DSDP 386, 387, 391A, and 391C boreholes in the northwestern Atlantic; sediments from the lower section of the borehole BDP-98 drilled at the bottom on the Akademichesky Ridge of Lake Baikal. All sediment has different sedimentation rates from 1-2 cm/kyr to 47 m/myr. The thermomagnetic analysis (TMA) measurements were made using the Curie express balance, constructed by Burov et.al. The TMA included measuring the specific magnetization of the samples in the magnetic field up to 500 mT at room temperature and recording the temperature dependence of magnetization. The heating rate is 100°C/min. The resulting thermomagnetic curves were used for identifying the Curie points of the magnetic minerals present in the sample and for establishing the character of the heating related mineral alterations, which can often be treated as the diagnostic signs of certain minerals. More interesting particles for us - native iron are identified from Curie points Tc = 710-770 °C. For some samples which contain minerals with the temperatures higher than 710 °C were made magnetic extraction. Magnetic extracts investigated on electron microscope. This analysis have done for determine the origin (cosmic or terrestrial) of native iron. The concentrations of native iron are bimodal everywhere with the zero mode necessarily present it testifies to the predominantly cosmic origin of the native iron. It is shown that quantity of cosmic dust depends on sedimentation rate and if it is slow, we have more particles if the speed is high more difficult to determine native iron. The work was carried out according to the Russian Government's Program of Competitive Growth of Kazan Federal University, supported by the grant provided to the Kazan State University for performing the state program in the field of scientific research, and partially supported by the Russian Foundation for Basic research №14-05-31376.

Adaptive Sampling for Urban Air Quality through Participatory Sensing

PubMed Central

Zeng, Yuanyuan; Xiang, Kai

2017-01-01

Air pollution is one of the major problems of the modern world. The popularization and powerful functions of smartphone applications enable people to participate in urban sensing to better know about the air problems surrounding them. Data sampling is one of the most important problems that affect the sensing performance. In this paper, we propose an Adaptive Sampling Scheme for Urban Air Quality (AS-air) through participatory sensing. Firstly, we propose to find the pattern rules of air quality according to the historical data contributed by participants based on Apriori algorithm. Based on it, we predict the on-line air quality and use it to accelerate the learning process to choose and adapt the sampling parameter based on Q-learning. The evaluation results show that AS-air provides an energy-efficient sampling strategy, which is adaptive toward the varied outside air environment with good sampling efficiency. PMID:29099766

An annual pattern of native embolism in upper branches of four tall conifer species.

PubMed

McCulloh, Katherine A; Johnson, Daniel M; Meinzer, Frederick C; Lachenbruch, Barbara

2011-06-01

The Pacific Northwest of North America experiences relatively mild winters and dry summers. For the tall coniferous trees that grow in this region, we predicted that loss in the hydraulic conductivity of uppermost branches would be avoided because of difficulty reversing accumulated emboli in xylem that is always under negative pressure. To test this hypothesis, we measured native percent loss in hydraulic conductivity (PLC; the decrease of in situ hydraulic conductivity relative to the maximum) monthly throughout 2009 in branches at the tops (∼50 m) of four species in an old growth forest in southern Washington. Contrary to our prediction, freeze-thaw cycles resulted in considerable native PLC. Branches showed hydraulic recovery in the spring and after a moderate increase in native embolism that was observed after an unusually hot period in August. The September recovery occurred despite decreases in the leaf and stem water potentials compared to August values. Recoveries in branches of these trees could not have occurred by raising the water potential enough to dissolve bubbles simply by transporting water from roots and must have occurred either through water absorption through needles and/or refilling under negative pressure. Excluding the August value, native embolism values correlated strongly with air temperature of the preceding 10 d. For three species, we found that branches with lower wood density had higher specific conductivity, but not greater native PLC than branches with higher wood density, which calls into question whether there is any hydraulic benefit to higher wood density in small branches in those species.

Tritium dynamics in soils and plants grown under three irrigation regimes at a tritium processing facility in Canada.

PubMed

Mihok, S; Wilk, M; Lapp, A; St-Amant, N; Kwamena, N-O A; Clark, I D

2016-03-01

The dynamics of tritium released from nuclear facilities as tritiated water (HTO) have been studied extensively with results incorporated into regulatory assessment models. These models typically estimate organically bound tritium (OBT) for calculating public dose as OBT itself is rarely measured. Higher than expected OBT/HTO ratios in plants and soils are an emerging issue that is not well understood. To support the improvement of models, an experimental garden was set up in 2012 at a tritium processing facility in Pembroke, Ontario to characterize the circumstances under which high OBT/HTO ratios may arise. Soils and plants were sampled weekly to coincide with detailed air and stack monitoring. The design included a plot of native grass/soil, contrasted with sod and vegetables grown in barrels with commercial topsoil under natural rain and either low or high tritium irrigation water. Air monitoring indicated that the plume was present infrequently at concentrations of up to about 100 Bq/m(3) (the garden was not in a major wind sector). Mean air concentrations during the day on workdays (HTO 10.3 Bq/m(3), HT 5.8 Bq/m(3)) were higher than at other times (0.7-2.6 Bq/m(3)). Mean Tissue Free Water Tritium (TFWT) in plants and soils and OBT/HTO ratios were only very weakly or not at all correlated with releases on a weekly basis. TFWT was equal in soils and plants and in above and below ground parts of vegetables. OBT/HTO ratios in above ground parts of vegetables were above one when the main source of tritium was from high tritium irrigation water (1.5-1.8). Ratios were below one in below ground parts of vegetables when irrigated with high tritium water (0.4-0.6) and above one in vegetables rain-fed or irrigated with low tritium water (1.3-2.8). In contrast, OBT/HTO ratios were very high (9.0-13.5) when the source of tritium was mainly from the atmosphere. TFWT varied considerably through time as a result of SRBT's operations; OBT/HTO ratios showed no clear temporal pattern in above or below ground plant parts. Native soil after ∼20 years of operations at SRBT had high initial OBT that persisted through the growing season; little OBT formed in garden plot soil during experiments. High OBT in native soil appeared to be a signature of higher past releases at SRBT. This phenomenon was confirmed in soils obtained at another processing facility in Canada with a similar history. The insights into variation in OBT/HTO ratios found here are of regulatory interest and should be incorporated in assessment models to aid in the design of relevant environmental monitoring programs for OBT. Crown Copyright © 2016. Published by Elsevier Ltd. All rights reserved.

A Genomewide Admixture Mapping Panel for Hispanic/Latino Populations

PubMed Central

Mao, Xianyun ; Bigham, Abigail W. ; Mei, Rui ; Gutierrez, Gerardo ; Weiss, Ken M. ; Brutsaert, Tom D. ; Leon-Velarde, Fabiola ; Moore, Lorna G. ; Vargas, Enrique ; McKeigue, Paul M. ; Shriver, Mark D. ; Parra, Esteban J. 

2007-01-01

Admixture mapping (AM) is a promising method for the identification of genetic risk factors for complex traits and diseases showing prevalence differences among populations. Efficient application of this method requires the use of a genomewide panel of ancestry-informative markers (AIMs) to infer the population of origin of chromosomal regions in admixed individuals. Genomewide AM panels with markers showing high frequency differences between West African and European populations are already available for disease-gene discovery in African Americans. However, no such a map is yet available for Hispanic/Latino populations, which are the result of two-way admixture between Native American and European populations or of three-way admixture of Native American, European, and West African populations. Here, we report a genomewide AM panel with 2,120 AIMs showing high frequency differences between Native American and European populations. The average intermarker genetic distance is ∼1.7 cM. The panel was identified by genotyping, with the Affymetrix GeneChip Human Mapping 500K array, a population sample with European ancestry, a Mesoamerican sample comprising Maya and Nahua from Mexico, and a South American sample comprising Aymara/Quechua from Bolivia and Quechua from Peru. The main criteria for marker selection were both high information content for Native American/European ancestry (measured as the standardized variance of the allele frequencies, also known as “f value”) and small frequency differences between the Mesoamerican and South American samples. This genomewide AM panel will make it possible to apply AM approaches in many admixed populations throughout the Americas. PMID:17503334

Colonial Museums in the Us (Un)translated

ERIC Educational Resources Information Center

Valdeón, Roberto A.

2015-01-01

This paper examines the role of museums in the creation of anglophone stories in the USA, and how the (non-)translation of signs contributes to create a narrative of exclusion vis-à-vis other groups, notably native Americans, the Spanish, and the French. Particular attention is paid to open-air museums that preserve old buildings and areas…

Solar-power mountain concept

NASA Technical Reports Server (NTRS)

Clarke, V. C., Jr.

1977-01-01

Solar collectors on mountainside collect thermal energy for mountaintop powerplant. Sloped arrangement reduces heat-transport problem of level ground-based collector field. Heated air rises without mechanical pumps and buoyancy force supplies pumping power without further cost. Precision tracking requirement of power towers eliminated by butted-together Winston-type concentrator troughs. Low-cost native rock is used for heat storage.

Nature Photography - Bald Eagles

NASA Image and Video Library

2016-12-13

With wings outstretched, an American bald eagle soars through the air above NASA's Kennedy Space Center in Florida. The center shares a border with the Merritt Island National Wildlife Refuge. The bird is one of more than 330 native and migratory bird species, 25 mammals, 117 fishes and 65 amphibians and reptiles that call Kennedy and the wildlife refuge home.

Nature Photography - Birds

NASA Image and Video Library

2016-12-12

A flock of egrets touches down near the Skid Strip at Cape Canaveral Air Force Station, near NASA's Kennedy Space Center in Florida. The center shares a boundary with the Merritt Island National Wildlife Refuge. The refuge is home to more than 65 amphibian and reptile species, along with 330 native and migratory bird species, 25 mammal and 117 fish species.

Characteristics of Student Loan Defaulters among Different Racial and Ethnic Groups. AIR 1995 Annual Forum Paper.

ERIC Educational Resources Information Center

Volkwein, J. Fredericks; And Others

This study examined the characteristics of students who default on their student loans and compared default among Whites, Asians, African Americans, Hispanics, and Native Americans. Four logistic regression models were developed using information from the National Post-Secondary Student Aid Study which contains an array of pre-college, college,…

Non-native plant invasions in managed and protected ponderosa pine/douglas-fir forests of the Colorado Front Range

USGS Publications Warehouse

Fornwalt, P.J.; Kaufmann, M.R.; Huckaby, L.S.; Stoker, J.M.; Stohlgren, T.J.

2003-01-01

We examined patterns of non-native plant diversity in protected and managed ponderosa pine/Douglas-fir forests of the Colorado Front Range. Cheesman Lake, a protected landscape, and Turkey Creek, a managed landscape, appear to have had similar natural disturbance histories prior to European settlement and fire protection during the last century. However, Turkey Creek has experienced logging, grazing, prescribed burning, and recreation since the late 1800s, while Cheesman Lake has not.Using the modified-Whittaker plot design to sample understory species richness and cover, we collected data for 30 0.1 ha plots in each landscape. Topographic position greatly influenced results, while management history did not. At both Cheesman Lake and Turkey Creek, low/riparian plots had highest native and non-native species richness and cover; upland plots (especially east/west-facing, south-facing and flat, high plots) had the lowest. However, there were no significant differences between Cheesman Lake and Turkey Creek for native species richness, native species cover, non-native species richness, or non-native species cover for any topographic category. In general, non-native species richness and cover were highly positively correlated with native species richness and/or cover (among other variables). In total, 16 non-native species were recorded at Cheesman Lake and Turkey Creek; none of the 16 non-native species were more common at one site than another.These findings suggest that: (1) areas that are high in native species diversity also contain more non-native species; (2) both protected and managed areas can be invaded by non-native plant species, and at similar intensities; and (3) logging, grazing, and other similar disturbances may have less of an impact on non-native species establishment and growth than topographic position (i.e., in lowland and riparian zones versus upland zones).

Non-native plant invasions in managed and protected ponderosa pine/Douglas-fir forests of the Colorado Front Range

USGS Publications Warehouse

Fornwalt, P.J.; Kaufmann, M.R.; Huckaby, L.S.; Stoker, J.M.; Stohlgren, T.J.

2003-01-01

We examined patterns of non-native plant diversity in protected and managed ponderosa pine/Douglas-fir forests of the Colorado Front Range. Cheesman Lake, a protected landscape, and Turkey Creek, a managed landscape, appear to have had similar natural disturbance histories prior to European settlement and fire protection during the last century. However, Turkey Creek has experienced logging, grazing, prescribed burning, and recreation since the late 1800s, while Cheesman Lake has not. Using the modified-Whittaker plot design to sample understory species richness and cover, we collected data for 30 0.1 ha plots in each landscape. Topographic position greatly influenced results, while management history did not. At both Cheesman Lake and Turkey Creek, low/riparian plots had highest native and non-native species richness and cover; upland plots (especially east/west-facing, south-facing and flat, high plots) had the lowest. However, there were no significant differences between Cheesman Lake and Turkey Creek for native species richness, native species cover, non-native species richness, or non-native species cover for any topographic category. In general, non-native species richness and cover were highly positively correlated with native species richness and/or cover (among other variables). In total, 16 non-native species were recorded at Cheesman Lake and Turkey Creek; none of the 16 non-native species were more common at one site than another. These findings suggest that: (1) areas that are high in native species diversity also contain more non-native species; (2) both protected and managed areas can be invaded by non-native plant species, and at similar intensities; and (3) logging, grazing, and other similar disturbances may have less of an impact on non-native species establishment and growth than topographic position (i.e., in lowland and riparian zones versus upland zones).

Halophila stipulacea: survival under adverse conditions.

NASA Astrophysics Data System (ADS)

Morton, C. R., Jr.; Primack, A. G.; Wyllie-Echeverria, S.

2016-02-01

Halophila stipulacea is an invasive seagrass species originally native to the Indian Ocean. It invaded the Mediterranean Sea shortly after the opening of the Suez Canal, and has recently been found in the Caribbean. It has been suggested that it arrived in the Mediterranean attached to small pleasure craft, fishing craft, or small cargo vessels. This research examines the feasibility of these methods of transport and the possibility that arrived transported by ocean currents. To investigate potential transport vectors, we collected rooted samples of H. stipulacae from Brewers Bay on the island of Saint Thomas, USVI, and exposed them to conditions that would be experienced under each alternative method of transport. The health of the samples was monitored using a FLOURPEN FP 100 portable fluorometer. Rhizomes, and associated leaf pairs declined rapidly when exposed to air, submersed in freshwater, or kept damp in a towel soaked in seawater, but survived for more than 5 weeks when left floating in a bucket submersed in a seawater tank. Water temperature ranged between 27C and 30C during the experiment. This suggests that it might be possible for H. stipulacae to cross the Atlantic aided by currents.

Emergence, seasonality, and hybridization of Laricobius nigrinus (Coleoptera: Derodontidae), an introduced predator of hemlock woolly adelgid (Hemiptera: Adelgidae), in the Tennessee Appalachians

Treesearch

Gregory J. Wiggins; Jerome F. Grant; Rusty Rhea; Albert (Bud) Mayfield; Abdul Hakeem; Paris L. Lambdin; A. B. Lamb Galloway

2016-01-01

From 2010 through 2013, adult emergence and seasonality of Laricobius nigrinus Fender, an introduced predatoryspecies native to western North America, as well as hybridization with the native species Laricobius rubidus(LeConte), were evaluated using emergence traps and beat-sheet sampling in areas of...

Maternal Gambling, Parenting, and Child Behavioral Functioning in Native American Families

ERIC Educational Resources Information Center

Momper, Sandra L.; Jackson, Aurora P.

2007-01-01

Using data from a sample of 150 Native American mothers of a child 6 to 15 years old, this study examined the relations between and among mothers' gambling, parenting in the home environment, social supports, and child behavior problems. Respondents were recruited from a tribal casino on a Great Lakes Indian reservation. Results indicate that…

Native American Navajo Teenage Parenting Women, Cross-Generational Support and Implications for Policy.

ERIC Educational Resources Information Center

Dalla, Rochelle L.; Gamble, Wendy C.

This study examined teenage parenting among Native Americans, focusing on the support received from grandmothers. The sample was comprised of 15 subjects living on a Navajo reservation: 8 adolescent mothers between 16 to 19 years--most with one child and enrolled either in high school or in an alternative education program; and seven women…

Shiga Toxins, and the Genes Encoding Them, in Fecal Samples from Native Idaho Ungulates▿

PubMed Central

Gilbreath, Jeremy J.; Shields, Malcolm S.; Smith, Rebekah L.; Farrell, Larry D.; Sheridan, Peter P.; Spiegel, Kathleen M.

2009-01-01

Cattle are a known reservoir of Shiga toxin-producing Escherichia coli. The prevalence and stability of Shiga toxin and/or Shiga toxin genes among native wild ungulates in Idaho were investigated. The frequency of both Shiga genes and toxin was similar to that reported for Idaho cattle (∼19%). PMID:19060170

Have brook trout (Salvelinus fontinalis) displaced bull trout (Salvelinus confluentus) along longitudinal gradients in central Idaho streams?

Treesearch

Bruce E. Rieman; James T. Peterson; Deborah L. Myers

2006-01-01

Invasions of non-native brook trout (Salvelinus fontinalis) have the potential for upstream displacement or elimination of bull trout (Salvelinus confluentus) and other native species already threatened by habitat loss. We summarized the distribution and number of bull trout in samples from 12 streams with and without brook trout...

Depressive Symptoms among Native and Immigrant Adolescents in Norway: The Role of Gender and Urbanization

ERIC Educational Resources Information Center

Fandrem, Hildegunn; Sam, David L.; Roland, Erling

2009-01-01

The study investigates depressive symptoms among 3,431 adolescents aged 13-15 years. The sample comprises both native Norwegian and immigrant adolescents living in Norway. The main finding of the study is that the level of depressive symptoms is significantly higher among the immigrant adolescents than their Norwegian counterparts. When analysed…

Factor Structure of the Wechsler Intelligence Scales for Children-Fourth Edition among Referred Native American Students

ERIC Educational Resources Information Center

Nakano, Selena; Watkins, Marley W.

2013-01-01

The Native American population is severely underrepresented in empirical test validity research despite being overrepresented in special education programs and at increased risk for psychoeducational evaluation. The structural validity of the Wechsler Intelligence Scale for Children-Fourth Edition (WISC-IV) was investigated with a sample of 176,…

American Sign Language Comprehension Test: A Tool for Sign Language Researchers

ERIC Educational Resources Information Center

Hauser, Peter C.; Paludneviciene, Raylene; Riddle, Wanda; Kurz, Kim B.; Emmorey, Karen; Contreras, Jessica

2016-01-01

The American Sign Language Comprehension Test (ASL-CT) is a 30-item multiple-choice test that measures ASL receptive skills and is administered through a website. This article describes the development and psychometric properties of the test based on a sample of 80 college students including deaf native signers, hearing native signers, deaf…

Cuba: Exploring the History of Admixture and the Genetic Basis of Pigmentation Using Autosomal and Uniparental Markers

PubMed Central

Fuentes-Smith, Evelyn; Salas, Antonio; Buttenschøn, Henriette N.; Demontis, Ditte; Torres-Español, María; Marín-Padrón, Lilia C.; Gómez-Cabezas, Enrique J.; Álvarez-Iglesias, Vanesa; Mosquera-Miguel, Ana; Martínez-Fuentes, Antonio; Carracedo, Ángel; Børglum, Anders D.; Mors, Ole

2014-01-01

We carried out an admixture analysis of a sample comprising 1,019 individuals from all the provinces of Cuba. We used a panel of 128 autosomal Ancestry Informative Markers (AIMs) to estimate the admixture proportions. We also characterized a number of haplogroup diagnostic markers in the mtDNA and Y-chromosome in order to evaluate admixture using uniparental markers. Finally, we analyzed the association of 16 single nucleotide polymorphisms (SNPs) with quantitative estimates of skin pigmentation. In the total sample, the average European, African and Native American contributions as estimated from autosomal AIMs were 72%, 20% and 8%, respectively. The Eastern provinces of Cuba showed relatively higher African and Native American contributions than the Western provinces. In particular, the highest proportion of African ancestry was observed in the provinces of Guantánamo (40%) and Santiago de Cuba (39%), and the highest proportion of Native American ancestry in Granma (15%), Holguín (12%) and Las Tunas (12%). We found evidence of substantial population stratification in the current Cuban population, emphasizing the need to control for the effects of population stratification in association studies including individuals from Cuba. The results of the analyses of uniparental markers were concordant with those observed in the autosomes. These geographic patterns in admixture proportions are fully consistent with historical and archaeological information. Additionally, we identified a sex-biased pattern in the process of gene flow, with a substantially higher European contribution from the paternal side, and higher Native American and African contributions from the maternal side. This sex-biased contribution was particularly evident for Native American ancestry. Finally, we observed that SNPs located in the genes SLC24A5 and SLC45A2 are strongly associated with melanin levels in the sample. PMID:25058410

Cuba: exploring the history of admixture and the genetic basis of pigmentation using autosomal and uniparental markers.

PubMed

Marcheco-Teruel, Beatriz; Parra, Esteban J; Fuentes-Smith, Evelyn; Salas, Antonio; Buttenschøn, Henriette N; Demontis, Ditte; Torres-Español, María; Marín-Padrón, Lilia C; Gómez-Cabezas, Enrique J; Alvarez-Iglesias, Vanesa; Mosquera-Miguel, Ana; Martínez-Fuentes, Antonio; Carracedo, Angel; Børglum, Anders D; Mors, Ole

2014-07-01

We carried out an admixture analysis of a sample comprising 1,019 individuals from all the provinces of Cuba. We used a panel of 128 autosomal Ancestry Informative Markers (AIMs) to estimate the admixture proportions. We also characterized a number of haplogroup diagnostic markers in the mtDNA and Y-chromosome in order to evaluate admixture using uniparental markers. Finally, we analyzed the association of 16 single nucleotide polymorphisms (SNPs) with quantitative estimates of skin pigmentation. In the total sample, the average European, African and Native American contributions as estimated from autosomal AIMs were 72%, 20% and 8%, respectively. The Eastern provinces of Cuba showed relatively higher African and Native American contributions than the Western provinces. In particular, the highest proportion of African ancestry was observed in the provinces of Guantánamo (40%) and Santiago de Cuba (39%), and the highest proportion of Native American ancestry in Granma (15%), Holguín (12%) and Las Tunas (12%). We found evidence of substantial population stratification in the current Cuban population, emphasizing the need to control for the effects of population stratification in association studies including individuals from Cuba. The results of the analyses of uniparental markers were concordant with those observed in the autosomes. These geographic patterns in admixture proportions are fully consistent with historical and archaeological information. Additionally, we identified a sex-biased pattern in the process of gene flow, with a substantially higher European contribution from the paternal side, and higher Native American and African contributions from the maternal side. This sex-biased contribution was particularly evident for Native American ancestry. Finally, we observed that SNPs located in the genes SLC24A5 and SLC45A2 are strongly associated with melanin levels in the sample.

Fluorescence spectroscopy using excitation and emission matrix for quantification of tissue native fluorophores and cancer diagnosis

NASA Astrophysics Data System (ADS)

Wu, Binlin; Gayen, S. K.; Xu, M.

2014-03-01

Native fluorescence spectrum of normal and cancerous human prostate tissues is studied to distinguish between normal and cancerous tissues, and cancerous tissues at different cancer grade. The tissue samples were obtained from Cooperative Human Tissue Network (CHTN) and National Disease Research Interchange(NDRI). An excitation and emission matrix (EEM) was generated for each tissue sample by acquiring native fluorescence spectrum of the sample using multiple excitation wavelengths. The non-negative matrix factorization algorithm was used to generate fluorescence EEMs that correspond to the fluorophores in biological tissues, including tryptophan, collagen, elastin, nicotinamide adenine dinucleotide (NADH), flavin adenine dinucleotide (FAD) and the background paraffin. We hypothesize that, as a consequence of metabolic changes associated with the development of cancer, the concentrations of NADH and FAD are different in normal and cancerous tissues, and also different for different cancer grades. We used the ratio of the abundances of FAD and NADH to distinguish between normal and cancerous tissues, and the tissue cancer grade. The FAD-to-NADH ratio was found to be the highest for normal tissue and decreased as the cancer grade increased.

Phonetic convergence in spontaneous conversations as a function of interlocutor language distance

PubMed Central

Kim, Midam; Horton, William S.; Bradlow, Ann R.

2013-01-01

This study explores phonetic convergence during conversations between pairs of talkers with varying language distance. Specifically, we examined conversations within two native English talkers and within two native Korean talkers who had either the same or different regional dialects, and between native and nonnative talkers of English. To measure phonetic convergence, an independent group of listeners judged the similarity of utterance samples from each talker through an XAB perception test, in which X was a sample of one talker’s speech and A and B were samples from the other talker at either early or late portions of the conversation. The results showed greater convergence for same-dialect pairs than for either the different-dialect pairs or the different-L1 pairs. These results generally support the hypothesis that there is a relationship between phonetic convergence and interlocutor language distance. We interpret this pattern as suggesting that phonetic convergence between talker pairs that vary in the degree of their initial language alignment may be dynamically mediated by two parallel mechanisms: the need for intelligibility and the extra demands of nonnative speech production and perception. PMID:23637712

Acculturation or development? Autonomy expectations among ethnic German immigrant adolescents and their native German age-mates.

PubMed

Titzmann, Peter F; Silbereisen, Rainer K

2012-01-01

This longitudinal study compared immigrant and native adolescents' expectations concerning the timing of conventional socially acceptable and oppositional less socially acceptable forms of autonomy. Based on normative development and a collectivist background among immigrants, both developmental and acculturative change was expected. The sample consisted of 523 ethnic German immigrants from the former Soviet Union and 475 native German adolescents, both groups divided into an early (age 12.5years) and a late (age 16years) adolescent group. Results revealed more developmental than acculturative change, as immigrants and natives mostly showed a similar rate of change in autonomy expectations. Acculturative change was found only for oppositional autonomy among late adolescent immigrants, whose later expectations approached those of their native age-mates over time. © 2012 The Authors. Child Development © 2012 Society for Research in Child Development, Inc.

Diet composition of the invasive cane toad (Chaunus marinus) on Rota, Northern Mariana Islands

USGS Publications Warehouse

Reed, R.N.; Bakkegard, K.A.; Desy, G.E.; Plentovich, S.M.

2007-01-01

The cane or marine toad (Chaunus marinus, formerly Bufo marinus) was introduced to the Northern Mariana Islands starting in the 1930s. The effects of this exotic predator on native vertebrates (especially lizards) are largely unknown. We analysed the stomach contents of 336 cane toads collected from the island of Rota, with the goal of estimating the level of toad predation on native vertebrates. Beetles, ants, millipedes, and grasshoppers/crickets comprised the majority of prey classes consumed by toads. The introduced Brahminy blindsnake (Ramphotyphlops braminus; N = 6) and conspecific cane toads (N = 4) were the vertebrates most commonly found in toad stomachs. Skinks (Emoia; N = 2) were the only native vertebrates represented in our sample. The small numbers of nocturnal terrestrial vertebrates native to Rota likely translates to relatively low rates of predation by cane toads on native vertebrates.

Rapid sampling of local minima in protein energy surface and effective reduction through a multi-objective filter

PubMed Central

2013-01-01

Background Many problems in protein modeling require obtaining a discrete representation of the protein conformational space as an ensemble of conformations. In ab-initio structure prediction, in particular, where the goal is to predict the native structure of a protein chain given its amino-acid sequence, the ensemble needs to satisfy energetic constraints. Given the thermodynamic hypothesis, an effective ensemble contains low-energy conformations which are similar to the native structure. The high-dimensionality of the conformational space and the ruggedness of the underlying energy surface currently make it very difficult to obtain such an ensemble. Recent studies have proposed that Basin Hopping is a promising probabilistic search framework to obtain a discrete representation of the protein energy surface in terms of local minima. Basin Hopping performs a series of structural perturbations followed by energy minimizations with the goal of hopping between nearby energy minima. This approach has been shown to be effective in obtaining conformations near the native structure for small systems. Recent work by us has extended this framework to larger systems through employment of the molecular fragment replacement technique, resulting in rapid sampling of large ensembles. Methods This paper investigates the algorithmic components in Basin Hopping to both understand and control their effect on the sampling of near-native minima. Realizing that such an ensemble is reduced before further refinement in full ab-initio protocols, we take an additional step and analyze the quality of the ensemble retained by ensemble reduction techniques. We propose a novel multi-objective technique based on the Pareto front to filter the ensemble of sampled local minima. Results and conclusions We show that controlling the magnitude of the perturbation allows directly controlling the distance between consecutively-sampled local minima and, in turn, steering the exploration towards conformations near the native structure. For the minimization step, we show that the addition of Metropolis Monte Carlo-based minimization is no more effective than a simple greedy search. Finally, we show that the size of the ensemble of sampled local minima can be effectively and efficiently reduced by a multi-objective filter to obtain a simpler representation of the probed energy surface. PMID:24564970

Eight Year Climatologies from Observational (AIRS) and Model (MERRA) Data

NASA Technical Reports Server (NTRS)

Hearty, Thomas; Savtchenko, Andrey; Won, Young-In; Theobalk, Mike; Vollmer, Bruce; Manning, Evan; Smith, Peter; Ostrenga, Dana; Leptoukh, Greg

2010-01-01

We examine climatologies derived from eight years of temperature, water vapor, cloud, and trace gas observations made by the Atmospheric Infrared Sounder (AIRS) instrument flying on the Aqua satellite and compare them to similar climatologies constructed with data from a global assimilation model, the Modern Era Retrospective-Analysis for Research and Applications (MERRA). We use the AIRS climatologies to examine anomalies and trends in the AIRS data record. Since sampling can be an issue for infrared satellites in low earth orbit, we also use the MERRA data to examine the AIRS sampling biases. By sampling the MERRA data at the AIRS space-time locations both with and without the AIRS quality control we estimate the sampling bias of the AIRS climatology and the atmospheric conditions where AIRS has a lower sampling rate. While the AIRS temperature and water vapor sampling biases are small at low latitudes, they can be more than a few degrees in temperature or 10 percent in water vapor at higher latitudes. The largest sampling biases are over desert. The AIRS and MERRA data are available from the Goddard Earth Sciences Data and Information Services Center (GES DISC). The AIRS climatologies we used are available for analysis with the GIOVANNI data exploration tool. (see, http://disc.gsfc.nasa.gov).

Sense of Belonging in School as a Protective Factor Against Drug Abuse Among Native American Urban Adolescents

PubMed Central

Napoli, Maria; Marsiglia, Flavio Francisco; Kulis, Stephen

2011-01-01

This article presents the results of a study conducted with 243 Native American students who were part of a multi-ethnic sample of adolescents attending middle school in a large urban center in the Southwest region of the United States. Native adolescents who felt a stronger sense of belonging in their school were found to report a lower lifetime use of alcohol and cigarettes, lower cigarette and marijuana use in the previous month, lower frequency of current use of these substances, fewer substances ever used, and a later age of initiation into drug use than other Native students. Research implications are discussed in relationship to school environment, culturally-grounded prevention curricula, and school social work practice. PMID:21359140

Chalk Point cooling tower project native vegetation study. Final report 1979

DOE Office of Scientific and Technical Information (OSTI.GOV)

Patterson, G.W.; Galloway, R.A.; Francis, B.A.

1979-06-01

The Potomac Electric Power Company generating station at Chalk Point, MD, utilizes brackish water in its natural draft cooling tower and, consequently, releases saline aerosol into the atmosphere. A research and monitoring project was established in 1974 to evaluate the effects of this drift on native perennial vegetation. Leaf samples have been collected form dogwood, Cornys florida, Virginia pine, Pinus virginiana, black locust, Robinia pseudoacacia, and sassafras, Sassafras albidum, located at 12 different sites in the vicinity of the power plant. Sampling was begun prior to the operation of the cooling tower, 1974, and continued through 1978. Complete results frommore » monthly monitoring of foliar chloride in the four native tree species is documented for May through September 1978. Results from salt spray experiments indicate chloride and sodium concentrations in the wood of dogwood trees increases with increased spraying levels.« less

The risk of exotic and native plants as hosts for four pest thrips (Thysanoptera: Thripinae).

PubMed

Schellhorn, N A; Glatz, R V; Wood, G M

2010-10-01

Interactions among insect pests, crops and weeds are well recognised. In fact, the elimination of weed hosts outside of the crop is a common practice to control many insect-vectored viruses. However, little is known about interactions among insect pests, crops and native vegetation, and whether native plants may be used to revegetate areas where weed hosts have been eliminated as part of horticultural management regimes. We used the Northern Adelaide Plains horticultural region (South Australia, Australia) as a model system to study the potential of various plant taxa in hosting four pest thrips (three exotic, one native; Frankliniella occidentalis, F. schultzei, Thrips tabaci and T. imaginis) when located adjacent to, and distant from, horticultural crops. Flower funnels were used for standardised sampling of thrips on flowers from 19 exotic weed and 12 native plant species, representing 13 and three families, respectively. Flowers were sampled monthly over a year, and statistical analyses were performed to identify significant determinants of probability of thrips occurrence and density. Plant family was found to significantly influence both measures for each thrips species. In addition, crop proximity influenced the probability of occurrence for the two Frankliniella species (but only influenced density of the key pest F. occidentalis), and season influenced density of all four pest thrips. All native plant species tested had a low likelihood of hosting the three exotic thrips species. Overall, results suggest that judicious choice of surrounding vegetation has potential to be an important component of integrated pest management (IPM) while increasing biodiversity conservation.

Successful application of lead isotopes in source apportionment, legal proceedings, remediation and monitoring

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gulson, Brian, E-mail: brian.gulson@mq.edu.au; CSIRO Earth Science and Resource Engineering North Ryde, NSW 1670; Korsch, Michael

In late 2006, the seaside community in Esperance Western Australia was alerted to thousands of native bird species dying. The source of the lead (Pb) was determined by Pb isotopes to derive from the handling of Pb carbonate concentrate through the Port, which began in July 2005. Concern was expressed for the impact of this on the community. Our objectives were to employ Pb isotope ratios to evaluate the source of Pb in environmental samples for use in legal proceedings, and for use in remediation and monitoring. Isotope measurements were undertaken of bird livers, plants, drinking water, soil, harbour sediments,more » air, bulk ceiling dust, gutter sludge, surface swabs and blood. The unique lead isotopic signature of the contaminating Pb carbonate enabled diagnostic apportionment of lead in samples. Apart from some soil and water samples, the proportion of contaminating Pb was >95% in the environmental samples. Lead isotopes were critical in resolving legal proceedings, are being used in the remediation of premises, were used in monitoring of workers involved in the decontamination of the storage facility, and monitoring transport of the concentrate through another port facility. Air samples show the continued presence of contaminant Pb, more than one year after shipping of concentrate ceased, probably arising from dust resuspension. Brief details of the comprehensive testing and cleanup of the Esperance community are provided along with the role of the Community. Lead isotopic analyses can provide significant benefits to regulatory agencies, interested parties, and the community where the signature is able to be characterised with a high degree of certainty. - Highlights: Black-Right-Pointing-Triangle Lead carbonate concentrate. Black-Right-Pointing-Triangle Successful use of Pb isotopes in identifying sources of Pb arising from transport and shipping. Black-Right-Pointing-Triangle Use of Pb isotopes in legal proceedings and their use in cleanup of residences. Black-Right-Pointing-Triangle Use of Pb isotopes in cleanup of a residual 9000 tonnes of Pb carbonate and in ongoing monitoring.« less

Rapid Design of Knowledge-Based Scoring Potentials for Enrichment of Near-Native Geometries in Protein-Protein Docking.

PubMed

Sasse, Alexander; de Vries, Sjoerd J; Schindler, Christina E M; de Beauchêne, Isaure Chauvot; Zacharias, Martin

2017-01-01

Protein-protein docking protocols aim to predict the structures of protein-protein complexes based on the structure of individual partners. Docking protocols usually include several steps of sampling, clustering, refinement and re-scoring. The scoring step is one of the bottlenecks in the performance of many state-of-the-art protocols. The performance of scoring functions depends on the quality of the generated structures and its coupling to the sampling algorithm. A tool kit, GRADSCOPT (GRid Accelerated Directly SCoring OPTimizing), was designed to allow rapid development and optimization of different knowledge-based scoring potentials for specific objectives in protein-protein docking. Different atomistic and coarse-grained potentials can be created by a grid-accelerated directly scoring dependent Monte-Carlo annealing or by a linear regression optimization. We demonstrate that the scoring functions generated by our approach are similar to or even outperform state-of-the-art scoring functions for predicting near-native solutions. Of additional importance, we find that potentials specifically trained to identify the native bound complex perform rather poorly on identifying acceptable or medium quality (near-native) solutions. In contrast, atomistic long-range contact potentials can increase the average fraction of near-native poses by up to a factor 2.5 in the best scored 1% decoys (compared to existing scoring), emphasizing the need of specific docking potentials for different steps in the docking protocol.

Native and European haplotypes of Phragmites Australis (common reed) in the central Platte River, Nebraska

USGS Publications Warehouse

Larson, D.L.; Galatowitsch, S.M.; Larson, J.L.

2011-01-01

Phragmites australis (common reed) is known to have occurred along the Platte River historically, but recent rapid increases in both distribution and density have begun to impact habitat for migrating sandhill cranes and nesting piping plovers and least terns. Invasiveness in Phragmites has been associated with the incursion of a European genotype (haplotype M) in other areas; determining the genotype of Phragmites along the central Platte River has implications for proper management of the river system. In 2008 we sampled Phragmites patches along the central Platte River from Lexington to Chapman, NE, stratified by bridge segments, to determine the current distribution of haplotype E (native) and haplotype M genotypes. In addition, we did a retrospective analysis of historical Phragmites collections from the central Platte watershed (1902-2006) at the Bessey Herbarium. Fresh tissue from the 2008 survey and dried tissue from the herbarium specimens were classified as haplotype M or E using the restriction fragment length polymorphism procedure. The European haplotype was predominant in the 2008 samples: only 14 Phragmites shoots were identified as native haplotype E; 224 were non-native haplotype M. The retrospective analysis revealed primarily native haplotype individuals. Only collections made in Lancaster County, near Lincoln, NE, were haplotype M, and the earliest of these was collected in 1973. ?? 2011 Copyright by the Center for Great Plains Studies, University of Nebraska-Lincoln.

Epiphyte Water Retention and Evaporation in Native and Invaded Tropical Montane Cloud Forests in Hawaii

NASA Astrophysics Data System (ADS)

Mudd, R. G.; Giambelluca, T. W.

2006-12-01

Epiphyte water retention was quantified at two montane cloud forest sites in Hawai'i Volcanoes National Park, one native and the other invaded by an alien tree species. Water storage elements measured included all epiphytic mosses, leafy liverworts, and filmy ferns. Tree surface area was estimated and a careful survey was taken to account for all epiphytes in the sample area of the forest. Samples were collected and analyzed in the lab for epiphyte water retention capacity (WRC). Based on the volume of the different kinds of epiphytes and their corresponding WRC, forest stand water retention capacity for each survey area was estimated. Evaporation from the epiphyte mass was quantified using artificial reference samples attached to trees that were weighed at intervals to determine changes in stored water on days without significant rain or fog. In addition, a soil moisture sensor was wrapped in an epiphyte sample and left in the forest for a 6-day period. Epiphyte biomass at the Native Site and Invaded Site were estimated to be 2.89 t ha-1 and 1.05 t ha-1, respectively. Average WRC at the Native Site and Invaded Site were estimated at 1.45 mm and 0.68 mm, respectively. The difference is likely due to the presence of the invasive Psidium cattleianum at the Invaded Site because its smooth stem surface is unable to support a significant epiphytic layer. The evaporation rate from the epiphyte mass near WSC for the forest stand at the Native Site was measured at 0.38 mm day-1, which represented 10.6 % of the total ET from the forest canopy at the Native Site during the period. The above research has been recently complemented by a thorough investigation of the WSC of all water storage elements (tree stems, tree leaves, shrubs, grasses, litter, fallen branches, and epiphytes) at six forested sites at different elevations within, above, and below the zone of frequent cloud-cover. The goal of this study was to create an inexpensive and efficient methodology for acquiring estimates of above-ground water retention in different types of forests by means of minimally-destructive sampling and surveying. The results of this work serve as baseline data providing a range of possible values of the water retention of specific forest elements and the entire above-ground total where no values have been previously recorded.

Phytochemical, morphological, and biological investigations of propolis from Central Chile.

PubMed

Valcic, S; Montenegro, G; Mujica, A M; Avila, G; Franzblau, S; Singh, M P; Maiese, W M; Timmermann, B N

1999-01-01

Propolis from central Chile was investigated for its plant origin by microscopical analysis of pollen grains and leaf fragments found in the sample. The pollen grains that appear with significant higher frequency in the sample corresponded to four native and two introduced species, whereas leaf fragments corresponded to four native species. Seventeen phenolic compounds that belong to the phenylpropane, benzaldehyde, dihydrobenzofuran, or benzopyran classes, were isolated from an organic extract that was found to have a moderate growth inhibitory activity against Mycobacterium avium, M. tuberculosis, and two strains of Staphylococcus aureus. The components responsible for activity were determined.

How Clean is your Local Air? Here's an app for that

NASA Astrophysics Data System (ADS)

Maskey, M.; Yang, E.; Christopher, S. A.; Keiser, K.; Nair, U. S.; Graves, S. J.

2011-12-01

Air quality is a vital element of our environment. Accurate and localized air quality information is critical for characterizing environmental impacts at the local and regional levels. Advances in location-aware handheld devices and air quality modeling have enabled a group of UAHuntsville scientists to develop a mobile app, LocalAQI, that informs users of current conditions and forecasts of up to twenty-four hours, of air quality indices. The air quality index is based on Community Multiscale Air Quality Modeling System (CMAQ). UAHuntsville scientists have used satellite remote sensing products as inputs to CMAQ, resulting in forecast guidance for particulate matter air quality. The CMAQ output is processed to compute a standardized air quality index. Currently, the air quality index is available for the eastern half of the United States. LocalAQI consists of two main views: air quality index view and map view. The air quality index view displays current air quality for the zip code of a location of interest. Air quality index value is translated into a color-coded advisory system. In addition, users are able to cycle through available hourly forecasts for a location. This location-aware app defaults to the current air quality of user's location. The map view displays color-coded air quality information for the eastern US with an ability to animate through the available forecasts. The app is developed using a cross-platform native application development tool, appcelerator; hence LocalAQI is available for iOS and Android-based phones and pads.

Pacific Island landbird monitoring report, Hawaiʻi Volcanoes National Park, 2015-2016: Tract groups 1 and 2

USGS Publications Warehouse

Judge, Seth; Camp, Richard J.; Sedgwick, Daniel; Squibb, Carine; Hart, Patrick J.

2017-01-01

Hawaiʻi Volcanoes National Park (HAVO) was surveyed for landbirds and landbird habitat from February through April 2015 and February through April 2016. This information provides the second datum in the time-series of Pacific Island Network (PACN) monitoring for long-term trends in landbird distribution, density, and abundance. Initial PACN surveys were conducted in 2010 and are repeated every five years. The entire survey area was comprised of eight tracts in forest, woodland, and shrub habitat, totaling 26,364 ha. Each tract was surveyed using point-transect distance sampling to calculate estimates of bird abundance and density. In addition to the permanent PACN survey transects, randomly generated point-transects were also surveyed, allowing for a split panel sampling design. A total of 14,061 bird detections of twenty-eight species were recorded during point counts; 8 species were native to Hawaiʻi and 20 species were non-native. ʻApapane (Himatione sanguinea) and Hawaiʻi ‘Amakihi (Chlorodrepanis virens virens) were the most abundant and widely distributed native species detected. ‘Ōma’o (Myadestes obscurus), ‘I‘iwi (Drepanis coccinea), and Hawaiʻi Elepaio (Chasiempis sandwichensis) occurred at fewer than 30% of the 757 stations surveyed, and were absent from some tracts. Three species of native birds detected during surveys were endangered—ʻIo (Buteo solitarius), Hawaiʻi Creeper (Loxops mana), and Hawaiʻi ʻAkepa (Loxops coccineus). Two additional endangered species were detected incidentally on transects—Nēnē (Branta sandwicensis) and ʻAkiapolaʻau (Hemignathus wilsoni). Non-native Japanese White-eye (Zosterops japonicus), Northern Cardinal (Cardinalis cardinalis), Japanese Bush Warbler (Horomis diphone), and Yellow-fronted Canary (Crithagra mozambica) were detected throughout most tracts and had the highest relative abundances among non-natives. The remaining species detected occurred at less than 10% of stations surveyed. Sufficient detections to allow density estimation were made for 11 species (5 native and 6 non-native). Changes in species-specific densities by tract were assessed between the initial and current surveys using two-sample z-tests in an equivalence testing framework to determine long-term trends. Differences between densities were highly variable for native species; including increasing, decreasing and stable trends. There were notable increases of ‘I‘iwi and ‘Ōma’o densities in some tracts. However there were also declines of ‘Ōma’o in three tracts, including leeward Northwest Kahuku where birds were detected in 2010 for the first time in over 30 years, but not during this recent survey. ‘I‘iwi densities increased in the high elevation Pāpā tract; however, they declined in the Mauna Loa Strip tract where the species may be vulnerable to avian malaria. Trend results for Hawaiʻi ʻAkepa were inconclusive, but the species occurred at more survey stations than in 2010, and we estimate a density of 0.31 ±0.34 birds/ha in the 10,989 ha Kahuku tract. Hawaiʻi Creeper had in an increasing trend in the Kahuku tract with a density of 0.16 ± 0.07 birds/ha and an inconclusive trend in Honomalino, where there was only one detection in 2016. There was a large expansion in the distribution and abundance of the non-native Yellow-fronted Canary and Japanese Bush Warbler. The Lavender Waxbill (Estrilda caerulescens) was detected in HAVO for the first time. Trend results were variable for other non-native species, but generally maintained stable densities when compared to previous landbird surveys. Several habitat variables were sampled at monitoring stations in each tract. Canopy and understory species were predominantly native, especially in tracts where ungulates have been excluded.

Air pollution, neighborhood acculturation factors, and neural tube defects among Hispanic women in California.

PubMed

Padula, Amy M; Yang, Wei; Carmichael, Suzan L; Lurmann, Frederick; Balmes, John; Hammond, S Katharine; Shaw, Gary M

2017-04-03

Neural tube defects (NTDs) are one of the most common types of birth defects. Environmental pollutants and acculturation have been associated with NTDs independently. The potential effect modification of acculturation in the relationship between ambient air pollution and risks of NTDs is not well understood. We investigated whether associations between traffic-related air pollutant exposure in early gestation and NTDs, and more specifically spina bifida, were modified by individual and neighborhood acculturation factors among 139 cases and 466 controls born in the San Joaquin Valley of California, 1997 to 2006. Five criteria pollutant exposures in tertiles, two outcomes, and seven neighborhood acculturation factors from the U.S. Census at the block group level were included for a total of 280 investigated associations. Estimates were adjusted for maternal education and multivitamin use in the first 2 months of pregnancy. Additional analyses were stratified by nativity. Increased odds of NTDs were observed for individuals who had high exposures to carbon monoxide, nitrogen oxide, or nitrogen dioxide and lived in neighborhoods that were more acculturated. Conversely, there were increased odds of NTDs for those who had high prenatal exposure to PM 10 and lived in neighborhoods that were less acculturated. The results of spina bifida alone were generally stronger in magnitude. When stratified by individual nativity (U.S.- vs. foreign-born), carbon monoxide, nitrogen oxide, and nitrogen dioxide were more strongly associated with NTDs among U.S.-born Hispanic mothers. Neighborhood acculturation factors were modifiers of the relationship between air pollution and NTDs in California, though not in a consistent direction for all pollutants. Birth Defects Research 109:403-422, 2017. © 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

Air Pollution, Neighborhood Acculturation Factors, and Neural Tube Defects Among Hispanic Women in California

PubMed Central

Padula, Amy M.; Yang, Wei; Carmichael, Suzan L.; Lurmann, Frederick; Balmes, John; Hammond, S. Katharine; Shaw, Gary M.

2017-01-01

Background Neural tube defects (NTDs) are one of the most common types of birth defects. Environmental pollutants and acculturation have been associated with NTDs independently. The potential effect modification of acculturation in the relationship between ambient air pollution and risks of NTDs is not well understood. Methods We investigated whether associations between traffic-related air pollutant exposure in early gestation and NTDs, and more specifically spina bifida, were modified by individual and neighborhood acculturation factors among 139 cases and 466 controls born in the San Joaquin Valley of California, 1997 to 2006. Five criteria pollutant exposures in tertiles, two outcomes, and seven neighborhood acculturation factors from the U.S. Census at the block group level were included for a total of 280 investigated associations. Estimates were adjusted for maternal education and multivitamin use in the first 2 months of pregnancy. Additional analyses were stratified by nativity. Results Increased odds of NTDs were observed for individuals who had high exposures to carbon monoxide, nitrogen oxide, or nitrogen dioxide and lived in neighborhoods that were more acculturated. Conversely, there were increased odds of NTDs for those who had high prenatal exposure to PM10 and lived in neighborhoods that were less acculturated. The results of spina bifida alone were generally stronger in magnitude. When stratified by individual nativity (U.S.- vs. foreign-born), carbon monoxide, nitrogen oxide, and nitrogen dioxide were more strongly associated with NTDs among U.S.-born Hispanic mothers. Conclusion Neighborhood acculturation factors were modifiers of the relationship between air pollution and NTDs in California, though not in a consistent direction for all pollutants. PMID:28398703

Greater soil carbon accumulation in deeper soils in native- than in exotic-dominated grassland plantings in the southern Plains

NASA Astrophysics Data System (ADS)

Wilsey, B. J.; Xu, X.; Polley, H. W.; Hofmockel, K. S.

2017-12-01

Global change includes invasion by non-native plant species, and invasion may affect carbon cycling and storage. We tested predictions in central Texas in an experiment that compares mixtures of all exotic or all native species under two summer irrigation treatments (128 or 0 mm) that varies the amount of summer drought stress. At the end of the eighth growing season after establishment, soils were sampled in 10 cm increments to 100 cm depth to determine if soil C differed among treatments, and if treatments differentially affected soil C in deeper soils. Soil C content was significantly (5%) higher under native plantings than under exotic species plantings (P < 0.001). The difference between native and exotic plantings increased with depth, and native plantings had higher soil C in deeper soil layers than in surface layers (native-exotic x depth, P < 0.001). Exotic plantings had decreasing soil C with depth. Soil C:N ratio and δ13C/12C were also significantly affected by native-exotic status, with soils in exotic plots having a significantly greater C4 contribution than native soils. Soil C was unaffected by summer irrigation treatments. Our results suggest that a significant amount of carbon could be sequestered by replacing exotic plant species with native species in the southern Plains, and that more work should be conducted at deeper soil depths. If we had restricted our analyses to surface soil layers (e.g. top 30 cm), we would have failed to detect depth differences between natives and exotics.

CASP10-BCL::Fold efficiently samples topologies of large proteins.

PubMed

Heinze, Sten; Putnam, Daniel K; Fischer, Axel W; Kohlmann, Tim; Weiner, Brian E; Meiler, Jens

2015-03-01

During CASP10 in summer 2012, we tested BCL::Fold for prediction of free modeling (FM) and template-based modeling (TBM) targets. BCL::Fold assembles the tertiary structure of a protein from predicted secondary structure elements (SSEs) omitting more flexible loop regions early on. This approach enables the sampling of conformational space for larger proteins with more complex topologies. In preparation of CASP11, we analyzed the quality of CASP10 models throughout the prediction pipeline to understand BCL::Fold's ability to sample the native topology, identify native-like models by scoring and/or clustering approaches, and our ability to add loop regions and side chains to initial SSE-only models. The standout observation is that BCL::Fold sampled topologies with a GDT_TS score > 33% for 12 of 18 and with a topology score > 0.8 for 11 of 18 test cases de novo. Despite the sampling success of BCL::Fold, significant challenges still exist in clustering and loop generation stages of the pipeline. The clustering approach employed for model selection often failed to identify the most native-like assembly of SSEs for further refinement and submission. It was also observed that for some β-strand proteins model refinement failed as β-strands were not properly aligned to form hydrogen bonds removing otherwise accurate models from the pool. Further, BCL::Fold samples frequently non-natural topologies that require loop regions to pass through the center of the protein. © 2015 Wiley Periodicals, Inc.

Development of aptamers against unpurified proteins.

PubMed

Goto, Shinichi; Tsukakoshi, Kaori; Ikebukuro, Kazunori

2017-12-01

SELEX (Systematic Evolution of Ligands by EXponential enrichment) has been widely used for the generation of aptamers against target proteins. However, its requirement for pure target proteins remains a major problem in aptamer selection, as procedures for protein purification from crude bio-samples are not only complicated but also time and labor consuming. This is because native proteins can be found in a large number of diverse forms because of posttranslational modifications and their complicated molecular conformations. Moreover, several proteins are difficult to purify owing to their chemical fragility and/or rarity in native samples. An alternative route is the use of recombinant proteins for aptamer selection, because they are homogenous and easily purified. However, aptamers generated against recombinant proteins produced in prokaryotic cells may not interact with the same proteins expressed in eukaryotic cells because of posttranslational modifications. Moreover, to date recombinant proteins have been constructed for only a fraction of proteins expressed in the human body. Therefore, the demand for advanced SELEX methods not relying on complicated purification processes from native samples or recombinant proteins is growing. This review article describes several such techniques that allow researchers to directly develop an aptamer from various unpurified samples, such as whole cells, tissues, serum, and cell lysates. The key advantages of advanced SELEX are that it does not require a purification process from a crude bio-sample, maintains the functional states of target proteins, and facilitates the development of aptamers against unidentified and uncharacterized proteins in unpurified biological samples. © 2017 Wiley Periodicals, Inc.

Effects of Long-Term Speech-in-Noise Training in Air Traffic Controllers and High Frequency Suppression. A Control Group Study.

PubMed

Pérez Zaballos, María Teresa; Ramos de Miguel, Ángel; Pérez Plasencia, Daniel; Zaballos González, María Luisa; Ramos Macías, Ángel

2015-12-01

To evaluate 1) if air traffic controllers (ATC) perform better than non-air traffic controllers in an open-set speech-in-noise test because of their experience with radio communications, and 2) if high-frequency information (>8000 Hz) substantially improves speech-in-noise perception across populations. The control group comprised 28 normal-hearing subjects, and the target group comprised 48 ATCs aged between 19 and 55 years who were native Spanish speakers. The hearing -in-noise abilities of the two groups were characterized under two signal conditions: 1) speech tokens and white noise sampled at 44.1 kHz (unfiltered condition) and 2) speech tokens plus white noise, each passed through a 4th order Butterworth filter with 70 and 8000 Hz low and high cutoffs (filtered condition). These tests were performed at signal-to-noise ratios of +5, 0, and -5-dB SNR. The ATCs outperformed the control group in all conditions. The differences were statistically significant in all cases, and the largest difference was observed under the most difficult conditions (-5 dB SNR). Overall, scores were higher when high-frequency components were not suppressed for both groups, although statistically significant differences were not observed for the control group at 0 dB SNR. The results indicate that ATCs are more capable of identifying speech in noise. This may be due to the effect of their training. On the other hand, performance seems to decrease when the high frequency components of speech are removed, regardless of training.

Air bubbles and hemolysis of blood samples during transport by pneumatic tube systems.

PubMed

Mullins, Garrett R; Bruns, David E

2017-10-01

Transport of blood samples through pneumatic tube systems (PTSs) generates air bubbles in transported blood samples and, with increasing duration of transport, the appearance of hemolysis. We investigated the role of air-bubble formation in PTS-induced hemolysis. Air was introduced into blood samples for 0, 1, 3 or 5min to form air bubbles. Hemolysis in the blood was assessed by (H)-index, lactate dehydrogenase (LD) and potassium in plasma. In an effort to prevent PTS-induced hemolysis, blood sample tubes were completely filled, to prevent air bubble formation, and compared with partially filled samples after PTS transport. We also compared hemolysis in anticoagulated vs clotted blood subjected to PTS transport. As with transport through PTSs, the duration of air bubble formation in blood by a gentle stream of air predicted the extent of hemolysis as measured by H-index (p<0.01), LD (p<0.01), and potassium (p<0.02) in plasma. Removing air space in a blood sample prevented bubble formation and fully protected the blood from PTS-induced hemolysis (p<0.02 vs conventionally filled collection tube). Clotted blood developed less foaming during PTS transport and was partially protected from hemolysis vs anticoagulated blood as indicated by lower LD (p<0.03) in serum than in plasma after PTS sample transport. Prevention of air bubble formation in blood samples during PTS transport protects samples from hemolysis. Copyright © 2017 Elsevier B.V. All rights reserved.

Staying connected: Native American women faculty members on experiencing success.

PubMed

Elliott, Barbara A; Dorscher, Joy; Wirta, Anna; Hill, Doris Leal

2010-04-01

To document how medical school faculty who are Native American women describe their sense of personal and professional success, so that mentoring can be better informed and diversity increased. This qualitative study was designed using snowball sampling methodology. Open-ended questions were developed with the authors' expertise and asked of five Native American women physician faculty participants until saturation was achieved. Transcripts were coded, organized, and interpreted to generate tentative themes and working hypotheses. The study was completed in 2006 and 2007. Native American women defined their place in the world through their primary culture. From analysis of the transcripts, three themes emerged as important in participants' sense of professional success: (1) Maintaining Native American values of belonging, connectedness, and giving back was essential, (2) success was perceived and experienced to have changed over time, and (3) mentoring relationships made success possible. Native American women faculty based their identity and definition of success in their primary culture's values, relationships, and expectations. Academic success can be accomplished with mentorship that honors the Native American woman's responsibility to her culture over time (with clinical and academic opportunities) while also assisting with development of appropriate academic skills and opportunities.

A macro-level fetal alcohol syndrome prevention program for Native Americans and Alaska Natives: description and evaluation.

PubMed

May, P A; Hymbaugh, K J

1989-11-01

Presented here are a detailed description and outcome evaluation of a comprehensive, macro-level Fetal Alcohol Syndrome prevention program for Native Americans and Alaska Natives. The program was designed to provide native communities throughout the United States with the knowledge, skills and strategies to initiate primary, secondary and tertiary prevention measures on their own. The key to the program was the training of a cadre of trainers/advocates in all local Native American and Alaska Native communities served by the Indian Health Service. These people were then supported and assisted in their efforts through a variety of means. Evaluation results of knowledge gained indicate that the local trainers had substantial success in imparting FAS information to a variety of audiences (prenatal groups, school children and community groups). Further, the evaluation samples also indicate that the knowledge was retained by the groups over time (2-4 months) and that there may have been some general diffusion of knowledge among peers in local communities. This program is presented in the hope that it will be replicated and improved upon by similar programs using this model as a base.

Uncertainties in monitoring of SVOCs in air caused by within-sampler degradation during active and passive air sampling

NASA Astrophysics Data System (ADS)

Melymuk, Lisa; Bohlin-Nizzetto, Pernilla; Prokeš, Roman; Kukučka, Petr; Přibylová, Petra; Vojta, Šimon; Kohoutek, Jiří; Lammel, Gerhard; Klánová, Jana

2017-10-01

Degradation of semivolatile organic compounds (SVOCs) occurs naturally in ambient air due to reactions with reactive trace gases (e.g., ozone, NOx). During air sampling there is also the possibility for degradation of SVOCs within the air sampler, leading to underestimates of ambient air concentrations. We investigated the possibility of this sampling artifact in commonly used active and passive air samplers for seven classes of SVOCs, including persistent organic pollutants (POPs) typically covered by air monitoring programs, as well as SVOCs of emerging concern. Two active air samplers were used, one equipped with an ozone denuder and one without, to compare relative differences in mass of collected compounds. Two sets of passive samplers were also deployed to determine the influence of degradation during longer deployment times in passive sampling. In active air samplers, comparison of the two sampling configurations suggested degradation of particle-bound polycyclic aromatic hydrocarbons (PAHs), with concentrations up to 2× higher in the denuder-equipped sampler, while halogenated POPs did not have clear evidence of degradation. In contrast, more polar, reactive compounds (e.g., organophosphate esters and current use pesticides) had evidence of losses in the sampler with denuder. This may be caused by the denuder itself, suggesting sampling bias for these compounds can be created when typical air sampling apparatuses are adapted to limit degradation. Passive air samplers recorded up to 4× higher concentrations when deployed for shorter consecutive sampling periods, suggesting that within-sampler degradation may also be relevant in passive air monitoring programs.

Attitudes of Jordanian University Students towards Using Online Chat Discourse with Native Speakers of English for Improving Their Language Proficiency

ERIC Educational Resources Information Center

Mahfouz, Safi M.; Ihmeideh, Fathi M.

2009-01-01

This study aims to investigate Jordanian university students' attitudes towards using video and text chat discourse with anonymous native speakers of English to improve their English proficiency. To achieve this aim, a questionnaire was designed. The study sample consisted of 320 university students enrolled in two Jordanian universities. Results…

The Use of Native Speaker Norms in Critical Period Hypothesis Research

ERIC Educational Resources Information Center

Andringa, Sible

2014-01-01

In critical period hypothesis (CPH) research, native speaker (NS) norm groups have often been used to determine whether nonnative speakers (NNSs) were able to score within the NS range of scores. One goal of this article is to investigate what NS samples were used in previous CPH research. The literature review shows that NS control groups tend to…

Attitudes of Native and Immigrant Students towards School Bullying in Greece

ERIC Educational Resources Information Center

Nikolaou, Georgios; Samsari, Eleni

2016-01-01

Although school bullying is a serious form of violence, relevant studies do not agree if immigrant students are at higher risk to be involved in bullying than native students in ethnically diverse schools. The purpose of the study was to investigate the attitudes of Greek and non-Greek students about school bullying. The sample composed of 719…

Landscaping on the new frontier: Waterwise design for the Intermountain West

Treesearch

Susan E. Meyer; Roger K. Kjelgren; Darrel G. Morrison; William A. Varga

2009-01-01

PLEASE NOTE: PDF IS ONLY A SAMPLE OF BOOK. A practical volume for the home or business owner on landscaping with native, drought-tolerant plants in the Rocky Mountain West. Filled with color illustrations, photos, and design sketches, over 100 native species are described, while practical tips on landscape design, water-wise irrigation, and keeping down the weeds are...

Do Digital Natives Differ by Computer Self-Efficacy and Experience? An Empirical Study

ERIC Educational Resources Information Center

Teo, Timothy

2016-01-01

This study serves to validate a Chinese translation of the Digital Native Assessment Scale (C-DNAS) and assess if significant differences exist between a sample of students and teachers from a culture different than the one used in the development of the DNAS. Participants were 402 university students from one province in Mainland China. Results…

The Federal Cylinder Project: A Guide to Field Cylinder Collections in Federal Agencies. Volume 1, Introduction and Inventory.

ERIC Educational Resources Information Center

Brady, Erika; And Others

Volume one of a multivolume catalog inventories 247 federal agency collections of wax cylinder recordings made by early ethnographers during 5 decades (1890-1941) of field work with Native American, traditional American, and world cultures. Native American music, chants, and linguistic samples comprise the majority of the collection. In addition…

Marital Patterns and Use of Mother Tongue at Home among Native-Born Asian Americans

ERIC Educational Resources Information Center

Kim, Chigon; Min, Pyong Gap

2010-01-01

This article examines marital patterns and use of mother tongue at home among native-born Asian Americans using the 2005-2007 American Community Survey 3-Year Public Use Microdata Sample. There are variations in mother-tongue use across Asian ethnic groups, but variations among different types of marriage are even greater. Those who marry within…

Two-Year Comparison of Transfer and Native Student Academic Performance: University of Illinois at Urbana-Champaign, Fall 1986 Group.

ERIC Educational Resources Information Center

Heiser, Linda M.; Abbed, Nejla

In 1989, a two-year study was completed comparing the academic progress of community college transfers, senior college transfers, and continuing juniors (natives) at the University of Illinois at Urbana-Champaign (UIUC). The study samples were comprised of 673 former community college students and 393 senior college transfers who entered UIUC in…

Do Native Speakers of North American and Singapore English Differentially Perceive Comprehensibility in Second Language Speech?

ERIC Educational Resources Information Center

Saito, Kazuya; Shintani, Natsuko

2016-01-01

The current study examined the extent to which native speakers of North American and Singapore English differentially perceive the comprehensibility (ease of understanding) of second language (L2) speech. Spontaneous speech samples elicited from 50 Japanese learners of English with various proficiency levels were first rated by 10 Canadian and 10…

Persian Native Speakers Reading Persian and English Texts: Their Strategic Behavior to Overcome Syntactic and Semantic Problems

ERIC Educational Resources Information Center

Alimorad, Zahra

2015-01-01

This study aimed to discover semantic and syntactic problems Persian native speakers might have while reading English and Persian texts and different strategies they use to overcome those problems. To this end, a convenient sample of 40 intermediate students studying English Literature at Shiraz University was selected. Twenty of them were asked…

Native American Ethnicity and Childhood Maltreatment as Variables in Perceptions and Adjustments to Boot Camp vs. "Traditional" Correctional Settings

ERIC Educational Resources Information Center

Gover, Angela R.

2005-01-01

A sample of 302 juveniles confined in two separate correctional facilities in a Western plains state was assessed to examine the relationship between child maltreatment and other delinquency risk factors, and Native American ethnicity on perceptions of the institutional environments and psychological adjustment in a boot camp and traditional…

Rapid movement and instability of an invasive hybrid swarm

USGS Publications Warehouse

Glotzbecker, Gregory J.; Walters, David; Blum, Michael J.

2016-01-01

Unstable hybrid swarms that arise following the introduction of non-native species can overwhelm native congeners, yet the stability of invasive hybrid swarms has not been well documented over time. Here we examine genetic variation and clinal stability across a recently formed hybrid swarm involving native blacktail shiner (Cyprinella venusta) and non-native red shiner (C. lutrensis) in the Upper Coosa River basin, which is widely considered to be a global hotspot of aquatic biodiversity. Examination of phenotypic, multilocus genotypic, and mitochondrial haplotype variability between 2005 and 2011 revealed that the proportion of hybrids has increased over time, with more than a third of all sampled individuals exhibiting admixture in the final year of sampling. Comparisons of clines over time indicated that the hybrid swarm has been rapidly progressing upstream, but at a declining and slower pace than rates estimated from historical collection records. Clinal comparisons also showed that the hybrid swarm has been expanding and contracting over time. Additionally, we documented the presence of red shiner and hybrids farther downstream than prior studies have detected, which suggests that congeners in the Coosa River basin, including all remaining populations of the threatened blue shiner (Cyprinella caerulea), are at greater risk than previously thought.

Water-soluble cyclodextrin polymers for enhanced relative recovery of hydrophobic analytes during microdialysis sampling.

PubMed

Ao, Xiaoping; Stenken, Julie A

2003-09-01

Microdialysis relative recovery (RR) enhancement using different water-soluble, epichlorohydrin-based cyclodextrin polymers (CD-EPS) was studied in vitro for different analytes, amitryptiline, carbamazepine, hydroquinone, ibuprofen, and 4-nitrophenol. When compared to the native CDs (alpha, beta, and gamma) on a per mole basis, the CD-EPS enhanced microdialysis RR was either statistically greater or the same. beta-CD-EPS was more highly retained than native beta-CD by a 20 000 Da molecular weight cutoff (MWCO) polycarbonate membrane, but showed no statistical difference for loss across a 100 000 Da MWCO polyethersulfone membrane (PES). When the same weight percent of beta-CD or beta-CD-EPS was included in the microdialysis perfusion fluid, the beta-CD-EPS produced a higher microdialysis RR than native beta-CD for all analytes across the PES membrane. However, enhancements for the PC membrane were statistically insignificant when beta-CD and beta-CD-EPS were compared on a per mole basis. These results suggest that CD-EPS may be used as effective enhancement agents during microdialysis sampling and for some membranes provide the additional advantage of being retained more than native CDs.

Old world versus new world: life-history alterations in a successful invader introduced across Europe.

PubMed

Fox, Michael G; Copp, Gordon H

2014-02-01

We examined differences in pumpkinseed (Lepomis gibbosus) life-history traits between native North American and introduced European populations, and tested three life-history predictions related to the effect of temperature, growth, waterbody size, and the presence/absence of predators on native and non-native populations. Pumpkinseed populations exhibit more 'opportunistic' traits (earlier maturity, smaller size at maturity, and higher reproductive allocation) in their introduced European range than those in their native range. Predictions of life-history traits were improved when indicators of juvenile growth rate (mean length at age 2), waterbody size (surface area), and thermal regime (air temperature degree-days above 10 °C) were incorporated into models along with continental location, but European pumpkinseed populations exhibit more opportunistic life-history traits than North American populations even when these factors are accounted for. Native pumpkinseed in waterbodies containing piscivores mature later and at a larger size, and have lower gonadosomatic indices than those in waterbodies lacking piscivores, whereas there is no significant difference in the same three life-history traits between European waterbodies containing or lacking piscivores. Because congeneric competitors of the pumpkinseed are absent from Europe, the apparent absence of a predator life-history effect there could also be due to the absence of the major sunfish competitors. In either case, the evolution and maintenance of more opportunistic traits in European pumpkinseed can likely be attributed to enemy release, and this may explain the successful establishment and spread of pumpkinseed in many parts of Europe.

Relative abundance and distribution of fishes and crayfish at Ash Meadows National Wildlife Refuge, Nye County, Nevada, 2007-08

USGS Publications Warehouse

Scoppettone, G. Gary; Rissler, Peter; Johnson, Danielle; Hereford, Mark

2011-01-01

This study provides baseline data of native and non-native fish populations in Ash Meadows National Wildlife Refuge (NWR), Nye County, Nevada, that can serve as a gauge in native fish enhancement efforts. In support of Carson Slough restoration, comprehensive surveys of Ash Meadows NWR fishes were conducted seasonally from fall 2007 through summer 2008. A total of 853 sampling stations were created using Geographic Information Systems and National Agricultural Imagery Program. In four seasons of sampling, Amargosa pupfish (genus Cyprinodon) was captured at 388 of 659 stations. The number of captured Amargosa pupfish ranged from 5,815 (winter 2008) to 8,346 (summer 2008). The greatest success in capturing Amargosa pupfish was in warm water spring-pools with temperature greater than 25 degrees C, headwaters of warm water spring systems, and shallow (depths less than 10 centimeters) grassy marshes. In four seasons of sampling, Ash Meadows speckled dace (Rhinichthys osculus nevadesis) was captured at 96 of 659 stations. The number of captured Ash Meadows speckled dace ranged from 1,009 (summer 2008) to 1,552 (winter 2008). The greatest success in capturing Ash Meadows speckled dace was in cool water spring-pools with temperature less than 20 degrees C and in the high flowing water outflows. Among 659 sampling stations within the range of Amargosa pupfish, red swamp crayfish (Procambarus clarkii) was collected at 458 stations, western mosquitofish (Gambusia affinis) at 374 stations, and sailfin molly (Poecilia latipinna) at 128 stations. School Springs was restored during the course of this study. Prior to restoration of School Springs, maximum Warm Springs Amargosa pupfish (Cyprinodon nevadensis pectoralis) captured from the six springs of the Warm Springs Complex was 765 (fall 2007). In four seasons of sampling, Warm Springs Amargosa pupfish were captured at 85 of 177 stations. The greatest success in capturing Warm Springs Amargosa pupfish when co-occurring with red swamp crayfish and western mosquitofish was in water with temperature greater than 26 degrees C near the springhead, and in shallow (depths less than 10 centimeters) grassy marshes. Among 177 sampling stations within the range of Warm Springs Amargosa pupfish, red swamp crayfish were collected at 96 stations and western mosquitofish were collected at 49 stations. Removal of convict cichlid (Amatitlania nigrofasciata) from Fairbanks Spring was followed by a substantial increase in Ash Meadows Amargosa pupfish (Cyprinodon nevadensis mionectes) captures from 910 pre-removal to 3,056 post-removal. Red swamp crayfish was continually removed from Bradford 1 Spring, which seemed to cause an increase in the speckled dace population. Restoration of Kings Pool and Jackrabbit Springs promoted the success of native fishes with the greatest densities in restored reaches. Ongoing restoration of Carson Slough and its tributaries, as well as control and elimination of invasive species, is expected to increase abundance and distribution of Ash Meadows' native fish populations. Further analysis of data from this study will help determine the habitat characteristic(s) that promote native species and curtail non-native species.

Ethnic and Gender Differences in Smoking and Smoking Cessation in a Population of Young Adult Air Force Recruits.

ERIC Educational Resources Information Center

Ward, Kenneth D.; Vander Weg, Mark W.; Kovach, Kristen Wood; Klesges, Robert C.; DeBon, Margaret W.; Haddock, C. Keith; Talcott, G. Wayne; Lando, Harry A.

2002-01-01

Investigated gender and ethnic differences in smoking and smoking cessation among young adult military recruits. Surveys administered at the start of basic training indicated that whites (especially white females) and Native Americans were more likely to smoke than other ethnic groups. Gender differences were not observed in cessation rates, which…

Environmental Assessment for Education Center Buckley Air Force Base, Colorado

DTIC Science & Technology

2006-07-01

Fraxinus pennsylvanica), honey locust (Gleditsia triacanthos), Colorado blue spruce (Picea pungens), ponderosa pine (Pinus ponderosa), Siberian elm...thirteen-lined ground squirrel (Spermophilus tridecemlineatus), fox squirrel (Sciurus niger), deer mouse (Peromyscus maniculatus), and prairie vole...Unlikely; occurs on eastern plains of Colorado in areas of native prairie. No observations at Buckley AFB. Preble’s meadow jumping mouse Zapus

Environmental Assessment (EA): Proposed Construction of a Munitions Flight Maintenance Facility, Hill Air Force Base, Utah

DTIC Science & Technology

2008-07-01

1997) Ozone(031 /·-c.,.. ?i Ogden C.ty Ma1 tenance Area (Redes~gnated 2001) er ~~.., Sa Laice Oty Ma1 enance Alea (RedeSIQreled 1999) Pr...disposal. 3.4 Vegetation Hill AFB is located in a geographic region that would typically support a mountain -brush type native plant community. Dominant

Environmental Assessment (EA): Proposed Construction of a Munitions Flight Maintenance Facility, Hill Air Force Base, Utah

DTIC Science & Technology

2008-07-01

031 /·-c.,.. ?i Ogden C.ty Ma1 tenance Area (Redes~gnated 2001) er ~~.., Sa Laice Oty Ma1 enance Alea (RedeSIQreled 1999) Pr<MYOrem...Vegetation Hill AFB is located in a geographic region that would typically support a mountain -brush type native plant community. Dominant vegetation

When Seeing Can Become Believing: A Film-Based Eco-Composition Course.

ERIC Educational Resources Information Center

Pollock, Jeri

Pepperdine University lies between the mountains of the Santa Monica Conservancy and the Pacific Ocean. The hills surrounding the campus are a paradise of native vegetation, much of it under federal protection, where there are many types of wildlife and the air is loud with insects and all sorts of birds. And yet, not only are the vast majority of…

Native Black Consciousness Responding to the Complexity of White Racial Consciousness

ERIC Educational Resources Information Center

Flowers, Natasha

2016-01-01

In this commentary, the author sttes that she has gained much insight from reviewing the collection of writing on whiteness. While there is agreement among those authors that there is a distinction between the first wave and second wave whiteness studies, there is a unified theme to not minimize the consequences of inhaling racist air, which is a…

Production and early field performance of RPM® seedlings in Missouri floodplains

Treesearch

Daniel C. Dey; Wayne Lovelace; John M. Kabrick; Michael A. Gold

2004-01-01

A new nursery culture process has been developed to produce large container RPM? seedlings in an effort to improve the success in artificially regenerating hardwoods. Major features of the process include air root pruning of seedlings grown in a well aerated soil medium to encourage a dense, fibrous root system. Production has focused on native bottomland tree, shrub,...

Fire and chaparral management at the chaparral/urban interface

Treesearch

Philip J. Riggan; Scott Franklin; James A. Brass

1986-01-01

The historic Bel Air fire of 1961 was not unusually large or fast-moving, nor was it a disaster for the native chaparral ecosystem. Yet it was disastrous for residents of the area, a consequence of unrestricted urban development in the chaparral of Southern California. Its costs included human suffering and financial loss from the destruction of 484 of 2,300 homes....

Air Writing as a Technique for the Acquisition of Sino-japanese Characters by Second Language Learners

ERIC Educational Resources Information Center

Thomas, Margaret

2015-01-01

This article calls attention to a facet of the expertise of second language (L2) learners of Japanese at the intersection of language, memory, gesture, and the psycholinguistics of a logographic writing system. Previous research has shown that adult L2 learners of Japanese living in Japan (similarly to native speakers of Japanese) often…

Final Seymour Johnson Air Force Base Housing Privatization Environmental Assessment

DTIC Science & Technology

2009-10-01

Natural Resources NEPA National Environmental Policy Act NLR Noise Level Reduction OSBM Office of State Budget and Management OSHA Occupational...Occupational Safety and Health Administration ( OSHA ) and similar state requirements. Earth Resources—Most of the activities associated with...including, for example, Cambodia, China, India, Japan, Korea, Malaysia , Pakistan, or the Philippine Islands; and • Native Hawaiian and Other Pacific

Update on the Native American Holo-Portrait series

NASA Astrophysics Data System (ADS)

Diamond, Mark C.

1995-02-01

In March of 1990 I filmed the first in the Native American Holo-Portrait series which I showed video of at the last Lake Forest Symposium. Since then I have done several additional film shoots with almost 40 different holo-portraits currently in the can. With around 500 Native American nations within the northern hemisphere the prospect of filming one hologram per nation looks like a multi-decade project. All 35 mm cine has been shot to date in color on extremely fine grain T formula emulsion stocks. Some of the footage has been shot using the rotating subject configuration and others with the laterally translating camera configuration. In the future I may film all subjects in both formats if time allows. Other images have been shot at reservations and pow-wows. All location work is accomplished with lighting and generators on hand because of questionable power availability at some of the sites. I have received a favorable response for potential support from the Smithsonian's Native American Museum now under construction on the mall next to the Air & Space Museum in Washington, D.C. This will be a fine display space for these portraits. However, I am planning to produce editions in several formats in order to allow for global distribution of these images.

Co-occurrence of invasive Cuban Treefrogs and native treefrogs in PVC pipe refugia

USGS Publications Warehouse

Elston, Laura M.; Waddle, J. Hardin; Rice, Kenneth G.; Percival, H. Franklin

2013-01-01

The Cuban Treefrog (Osteopilus septentrionalis) was first introduced to Florida at Key West. Since this introduction, Cuban Treefrogs have spread to Miami and are now established throughout most of peninsular Florida. Cuban Treefrogs can become very abundant in areas they colonize. Several reasons contribute to their success, including a generalist diet, high fecundity and the ability to reproduce year-round, and use of disturbed or human-modified habitats. Scientists and managers are concerned that Cuban Treefrogs may contribute to the decline of native treefrogs. Cuban Treefrogs may exclude native treefrogs through both competition and predation. Because the evidence from our study and others suggests that Green and Squirrel Treefrogs do not alter their behavior to avoid Cuban Treefrogs, there is cause for concern that sampling with PVC pipes may increase the vulnerability of the native species to predation. This possibility needs further research, including whether other species of native treefrogs sympatric to where Cuban Treefrogs have invaded are also naïve to the possible threat posed by these frogs, and also if native treefrogs eventually learn to avoid Cuban Treefrogs.

DNA barcoding the native flowering plants and conifers of Wales.

PubMed

de Vere, Natasha; Rich, Tim C G; Ford, Col R; Trinder, Sarah A; Long, Charlotte; Moore, Chris W; Satterthwaite, Danielle; Davies, Helena; Allainguillaume, Joel; Ronca, Sandra; Tatarinova, Tatiana; Garbett, Hannah; Walker, Kevin; Wilkinson, Mike J

2012-01-01

We present the first national DNA barcode resource that covers the native flowering plants and conifers for the nation of Wales (1143 species). Using the plant DNA barcode markers rbcL and matK, we have assembled 97.7% coverage for rbcL, 90.2% for matK, and a dual-locus barcode for 89.7% of the native Welsh flora. We have sampled multiple individuals for each species, resulting in 3304 rbcL and 2419 matK sequences. The majority of our samples (85%) are from DNA extracted from herbarium specimens. Recoverability of DNA barcodes is lower using herbarium specimens, compared to freshly collected material, mostly due to lower amplification success, but this is balanced by the increased efficiency of sampling species that have already been collected, identified, and verified by taxonomic experts. The effectiveness of the DNA barcodes for identification (level of discrimination) is assessed using four approaches: the presence of a barcode gap (using pairwise and multiple alignments), formation of monophyletic groups using Neighbour-Joining trees, and sequence similarity in BLASTn searches. These approaches yield similar results, providing relative discrimination levels of 69.4 to 74.9% of all species and 98.6 to 99.8% of genera using both markers. Species discrimination can be further improved using spatially explicit sampling. Mean species discrimination using barcode gap analysis (with a multiple alignment) is 81.6% within 10×10 km squares and 93.3% for 2×2 km squares. Our database of DNA barcodes for Welsh native flowering plants and conifers represents the most complete coverage of any national flora, and offers a valuable platform for a wide range of applications that require accurate species identification.

DNA Barcoding the Native Flowering Plants and Conifers of Wales

PubMed Central

de Vere, Natasha; Rich, Tim C. G.; Ford, Col R.; Trinder, Sarah A.; Long, Charlotte; Moore, Chris W.; Satterthwaite, Danielle; Davies, Helena; Allainguillaume, Joel; Ronca, Sandra; Tatarinova, Tatiana; Garbett, Hannah; Walker, Kevin; Wilkinson, Mike J.

2012-01-01

We present the first national DNA barcode resource that covers the native flowering plants and conifers for the nation of Wales (1143 species). Using the plant DNA barcode markers rbcL and matK, we have assembled 97.7% coverage for rbcL, 90.2% for matK, and a dual-locus barcode for 89.7% of the native Welsh flora. We have sampled multiple individuals for each species, resulting in 3304 rbcL and 2419 matK sequences. The majority of our samples (85%) are from DNA extracted from herbarium specimens. Recoverability of DNA barcodes is lower using herbarium specimens, compared to freshly collected material, mostly due to lower amplification success, but this is balanced by the increased efficiency of sampling species that have already been collected, identified, and verified by taxonomic experts. The effectiveness of the DNA barcodes for identification (level of discrimination) is assessed using four approaches: the presence of a barcode gap (using pairwise and multiple alignments), formation of monophyletic groups using Neighbour-Joining trees, and sequence similarity in BLASTn searches. These approaches yield similar results, providing relative discrimination levels of 69.4 to 74.9% of all species and 98.6 to 99.8% of genera using both markers. Species discrimination can be further improved using spatially explicit sampling. Mean species discrimination using barcode gap analysis (with a multiple alignment) is 81.6% within 10×10 km squares and 93.3% for 2×2 km squares. Our database of DNA barcodes for Welsh native flowering plants and conifers represents the most complete coverage of any national flora, and offers a valuable platform for a wide range of applications that require accurate species identification. PMID:22701588

Stencil lithography of superconducting contacts on MBE-grown topological insulator thin films

NASA Astrophysics Data System (ADS)

Schüffelgen, Peter; Rosenbach, Daniel; Neumann, Elmar; Stehno, Martin P.; Lanius, Martin; Zhao, Jialin; Wang, Meng; Sheehan, Brendan; Schmidt, Michael; Gao, Bo; Brinkman, Alexander; Mussler, Gregor; Schäpers, Thomas; Grützmacher, Detlev

2017-11-01

Topological insulator (Bi0.06Sb0.94)2Te3 thin films grown by molecular beam epitaxy have been capped in-situ with a 2 nm Al film to conserve the pristine topological surface states. Subsequently, a shadow mask - structured by means of focus ion beam - was in-situ placed underneath the sample to deposit a thick layer of Al on well-defined microscopically small areas. The 2 nm thin Al layer fully oxidizes after exposure to air and in this way protects the TI surface from degradation. The thick Al layer remains metallic underneath a 3-4 nm thick native oxide layer and therefore serves as (super-) conducting contacts. Superconductor-Topological Insulator-Superconductor junctions with lateral dimensions in the nm range have then been fabricated via an alternative stencil lithography technique. Despite the in-situ deposition, transport measurements and transmission electron microscope analysis indicate a low transparency, due to an intermixed region at the interface between topological insulator thin film and metallic Al.

Temporal genetic monitoring of hybridization between native westslope cutthroat trout and introduced rainbow trout in the Stehekin River, Washington

USGS Publications Warehouse

Ostberg, Carl O.; Chase, Dorothy M.

2012-01-01

Introgressive hybridization with introduced rainbow trout (RBT) (Oncorhynchus mykiss) has led to the loss of native cutthroat trout species (O. clarkii) throughout their range, creating conservation concerns. Monitoring temporal hybridization trends provides resource managers with a tool for determining population status and information for establishing conservation goals for native cutthroat trout. In this study, we re-sampled six locations in 2010 within the Stehekin River watershed, North Cascades National Park, which were originally sampled between 1999 and 2003. We used genetic markers to monitor changes in hybridization levels between sampling periods in the native westslope cutthroat trout (WCT) (O. c. lewisi) stemming from past RBT introductions. Additionally, two new locations from the lower Stehekin drainage were added to the baseline data. We found that the frequency of WCT, RBT, and their hybrids was not significantly different between monitoring periods, but that RBT allele frequencies decreased in two locations and increased in one location. We also found a consistent, substantial reduction in the frequency of RBT alleles over the monitoring period in the Stehekin River upstream of Bridge Creek (SR3) compared to the Stehekin River downstream of Bridge Creek (SR1 -2) and within lower Bridge Creek (BR1) although these three locations are confined to a small geographic area (approximately 5 km). Ecological and/or evolutionary processes likely restrict the dispersal of RBT alleles in the Stehekin River upstream of Bridge Creek.

Connecting differential responses of native and invasive riparian plants to climate change and environmental alteration.

PubMed

Flanagan, Neal E; Richardson, Curtis J; Ho, Mengchi

2015-04-01

Climate change is predicted to impact river systems in the southeastern United States through alterations of temperature, patterns of precipitation and hydrology. Future climate scenarios for the southeastern United States predict (1) surface water temperatures will warm in concert with air temperature, (2) storm flows will increase and base flows will decrease, and (3) the annual pattern of synchronization between hydroperiod and water temperature will be altered. These alterations are expected to disturb floodplain plant communities, making them more vulnerable to establishment of invasive species. The primary objective of this study is to evaluate whether native and invasive riparian plant assemblages respond differently to alterations of climate and land use. To study the response of riparian wetlands to watershed and climate alterations, we utilized an existing natural experiment imbedded in gradients of temperature and hydrology-found among dammed and undammed rivers. We evaluated a suite of environmental variables related to water temperature, hydrology, watershed disturbance, and edaphic conditions to identify the strongest predictors of native and invasive species abundances. We found that native species abundance is strongly influenced by climate-driven variables such as temperature and hydrology, while invasive species abundance is more strongly influenced by site-specific factors such as land use and soil nutrient availability. The patterns of synchronization between plant phenology, annual hydrographs, and annual water temperature cycles may be key factors sustaining the viability of native riparian plant communities. Our results demonstrate the need to understand the interactions between climate, land use, and nutrient management in maintaining the species diversity of riparian plant communities. Future climate change is likely to result in diminished competitiveness of native plant species, while the competitiveness of invasive species will increase due to anthropogenic watershed disturbance and accelerated nutrient and sediment export.

Concentration of trace elements on branded cigarette in Malaysia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Azman, Muhammad Azfar, E-mail: m-azfar@nuclearmalaysia.gov.my; Hamzah, Suhaimi; Rahman, Shamsiah Abdul

Tobacco is a plant that is used as a recreational drug since the beginning of its use by the Native Americans. Now with the development of the tobacco industry, smoking has become a norm for the public in Malaysia. Trace elements in plants are mostly due to the uptake processes from the soils into the roots of the plants. The concentration of the elements may also be influenced by the elements contained in the water and also fertilizers. This paper aim to analyze the concentration of the trace elements contained in the branded cigarettes sold in Malaysia by utilizing themore » neutron activation analysis. The tobaccos were taken out from the cigarettes. The collected samples were air dried and passed through 2 mm sieve. Instrumental Neutron Activation Analysis (NAA) has been used for the determination of trace elements. Samples were activated in the Nuclear Malaysia Triga Mark II reactor with a neutron flux of 2.0 x 10{sup 12} n cm{sup -2} s{sup -1}. The samples then were analyzed using ORTEC Gamma Spectrometer a co-axial n-type HPGe detector with resolution of 2.0 keV at 1332 keV and relative efficiency of 20%. The data obtained could help in assessing the concentration of the trace elements that complying with the standard limitation dose proposed by World Health Organization (WHO)« less

Lester Machta (1919-2001)

NASA Astrophysics Data System (ADS)

Seidel, Dian; Angell, Jim

Lester Machta, the former director of the NOAA Air Resources Laboratory and an AGU Fellow, died August 31, 2001, of leukemia. For more than half a century, he led pioneering research programs in air quality that addressed some of the key environmental issues of our times, and he did so with a rare devotion to both science and public service. He had been an AGU member since 1950 (Atmospheric Sciences).A native New Yorker, he obtained a B.A. in mathematics (cum laude) from Brooklyn College and, after the war, he completed an M.S. in meteorology at NYU and an ScD. in meteorology from the Massachusetts Institute of Technology

Impacts of land-use change to ecosystem services

USGS Publications Warehouse

Stohlgren, Tom; Holcombe, Tracy R.

2013-01-01

Increasing human populations on the landscape and globe coincide with increasing demands for food, energy, and other natural resources, with generally negative impacts to wildlife habitat, air and water quality, and natural scenery. Here we define and describe the impacts of land-use change on ecosystem services – the services that ecosystems provide humans such as filtering air and water, providing food, resources, recreation, and esthetics. We show how the human footprint is rapidly expanding due to population growth, demand for resources, and globalization. Increased trade and transportation has brought all the continents back together, creating new challenges for conserving native species and ecosystems.

40 CFR 61.34 - Air sampling.

Code of Federal Regulations, 2011 CFR

2011-07-01

... 40 Protection of Environment 8 2011-07-01 2011-07-01 false Air sampling. 61.34 Section 61.34... sampling. (a) Stationary sources subject to § 61.32(b) shall locate air sampling sites in accordance with a... concentrations calculated within 30 days after filters are collected. Records of concentrations at all sampling...

NHEXAS PHASE I ARIZONA STUDY--METALS IN AIR ANALYTICAL RESULTS

EPA Science Inventory

The Metals in Air data set contains analytical results for measurements of up to 11 metals in 369 air samples over 175 households. Samples were taken by pumping standardized air volumes through filters at indoor and outdoor sites around each household being sampled. The primary...

Community Impacts of Prosopis juliflora Invasion: Biogeographic and Congeneric Comparisons

PubMed Central

Kaur, Rajwant; Gonzáles, Wilfredo L.; Llambi, Luis Daniel; Soriano, Pascual J.; Callaway, Ragan M.; Rout, Marnie E.; Gallaher, Timothy J.; Inderjit

2012-01-01

We coordinated biogeographical comparisons of the impacts of an exotic invasive tree in its native and non-native ranges with a congeneric comparison in the non-native range. Prosopis juliflora is taxonomically complicated and with P. pallida forms the P. juliflora complex. Thus we sampled P. juliflora in its native Venezuela, and also located two field sites in Peru, the native range of Prosopis pallida. Canopies of Prosopis juliflora, a native of the New World but an invader in many other regions, had facilitative effects on the diversity of other species in its native Venezuela, and P. pallida had both negative and positive effects depending on the year, (overall neutral effects) in its native Peru. However, in India and Hawaii, USA, where P. juliflora is an aggressive invader, canopy effects were consistently and strongly negative on species richness. Prosopis cineraria, a native to India, had much weaker effects on species richness in India than P. juliflora. We carried out multiple congeneric comparisons between P. juliflora and P. cineraria, and found that soil from the rhizosphere of P. juliflora had higher extractable phosphorus, soluble salts and total phenolics than P. cineraria rhizosphere soils. Experimentally applied P. juliflora litter caused far greater mortality of native Indian species than litter from P. cineraria. Prosopis juliflora leaf leachate had neutral to negative effects on root growth of three common crop species of north-west India whereas P. cineraria leaf leachate had positive effects. Prosopis juliflora leaf leachate also had higher concentrations of total phenolics and L-tryptophan than P. cineraria, suggesting a potential allelopathic mechanism for the congeneric differences. Our results also suggest the possibility of regional evolutionary trajectories among competitors and that recent mixing of species from different trajectories has the potential to disrupt evolved interactions among native species. PMID:22984595

Combustion characteristics of north-eastern USA vegetation tested in the cone calorimeter: invasive versus non-invasive plants

Treesearch

Alison C. Dibble; Robert H. White; Patricia K. Lebow

2007-01-01

In the north-eastern United States, invasive plants alter forest fuels, but their combustion characteristics are largely unknown. We assessed unground samples of foliage and twigs in the cone calorimeter for 21 non-invasive, native species, paired with 21 invasive species (18 non-native). Variables included sustained ignition, peak heat release rate, total heat release...

HIV-Related Risk Behaviors, Perceptions of Risk, HIV Testing, and Exposure to Prevention Messages and Methods among Urban American Indians and Alaska Natives

ERIC Educational Resources Information Center

Lapidus, Jodi A.; Bertolli, Jeanne; McGowan, Karen; Sullivan, Patrick

2006-01-01

The goal of this study was to describe HIV risk behaviors, perceptions, testing, and prevention exposure among urban American Indians and Alaska Natives (AI/AN). Interviewers administered a questionnaire to participants recruited through anonymous peer-referral sampling. Chi-square tests and multiple logistic regression were used to compare HIV…

Cardiovascular Health: Associations with Race-ethnicity, Nativity, and Education in a Diverse, Population-based Sample of Californians

PubMed Central

Bostean, Georgiana; Roberts, Christian K.; Crespi, Catherine M.; Prelip, Michael; Peters, Anne; Belin, Thomas R.; McCarthy, William J.

2013-01-01

Purpose This study examined how race-ethnicity, nativity, and education interact to influence disparities in cardiovascular (CV) health, a new concept defined by the American Heart Association (AHA). We assessed whether race-ethnicity and nativity disparities in CV health vary by education, and whether the foreign-born differ in CV health from their US-born race-ethnic counterparts with comparable education. Methods We used data from the 2009 California Health Interview Survey to determine the prevalence of optimal CV health metrics (based on selected AHA guidelines) among adults ages 25 and over (n = 42,014). We examined the interaction between education and ethnicity-nativity, comparing predicted probabilities of each CV health measure between US-born and foreign-born Whites, Asians, and Latinos. Results All groups were at high risk of suboptimal physical activity levels, fruit and vegetable and fast food consumption, and overweight/obesity. Those with higher education were generally better-off, except among Asians. Ethnicity-nativity differences were more pronounced among those with less than a college degree. The foreign-born exhibited both advantages and disadvantages in CV health compared to their US-born counterparts that varied by ethnicity-nativity. Conclusions Education influences ethnicity-nativity disparities in CV health, with most race-ethnic and nativity differences occurring among the less educated. Studies of nativity differences in CV health should stratify by education in order to adequately address SES differences. PMID:23726820

Pilot test of a cervical cancer prevention video developed for Alaska Native women.

PubMed Central

Stillwater, B; Echavarria, V A; Lanier, A P

1995-01-01

Cancer of the cervix is twice as likely to occur among Alaska Native women than among Caucasian women in the United State. To understand some of the factors associated with this high incidence, a random sample of 528 Alaska Native women were surveyed about their knowledge, attitudes, and behavior regarding cervical cancer and its risk factors. From the results of the Alaska Native Women's Health Project study, the need for more public education related to cervical cancer prevention was identified. A review of existing educational resources revealed that no culturally appropriate materials related to cervical cancer had been developed for Alaska Native women. To increase Native women's knowledge about cervical cancer and to motivate them to obtain annual Papanicolaou tests, a 12-minute videotape presentation was developed specifically for this population. The videotape portrayed Alaska Native women as role models from the community discussing cervical cancer and Papanicolaou tests and engaging in healthy lifestyles. The videotape was pilot tested with several groups of Alaska Native women. The women were surveyed before and after watching the video and were asked to rate the tape and make comments about it. The results of the posttest demonstrated a significant increase in the knowledge level of the participants. The videotape was well received because of its cultural sensitivity and appropriateness. On the basis of this study, the development of additional culturally appropriate educational materials related to cancer prevention of Alaska Native women is recommended. Images p213-a PMID:7631000

Cardiovascular health: associations with race-ethnicity, nativity, and education in a diverse, population-based sample of Californians.

PubMed

Bostean, Georgiana; Roberts, Christian K; Crespi, Catherine M; Prelip, Michael; Peters, Anne; Belin, Thomas R; McCarthy, William J

2013-07-01

This study examined how race-ethnicity, nativity, and education interact to influence disparities in cardiovascular (CV) health, a new concept defined by the American Heart Association. We assessed whether race-ethnicity and nativity disparities in CV health vary by education and whether the foreign-born differ in CV health from their U.S.-born race-ethnic counterparts with comparable education. We used data from the 2009 California Health Interview Survey to determine the prevalence of optimal CV health metrics (based on selected American Heart Association guidelines) among adults ages 25 and older (n = 42,014). We examined the interaction between education and ethnicity-nativity, comparing predicted probabilities of each CV health measure between U.S.-born and foreign-born White, Asian, and Latino respondents. All groups were at high risk of suboptimal physical activity levels, fruit and vegetable and fast food consumption, and overweight/obesity. Those with greater education were generally better off except among Asian respondents. Ethnicity-nativity differences were more pronounced among those with less than a college degree. The foreign-born respondents exhibited both advantages and disadvantages in CV health compared with their U.S.-born counterparts that varied by ethnicity-nativity. Education influences ethnicity-nativity disparities in CV health, with most race-ethnic and nativity differences occurring among the less educated. Studies of nativity differences in CV health should stratify by education in order to adequately address SES differences. Copyright © 2013 Elsevier Inc. All rights reserved.

Use of dust fall filters as passive samplers for metal concentrations in air for communities near contaminated mine tailings

PubMed Central

Beamer, P.I.; Sugeng, A. J.; Kelly, M.D.; Lothrop, N.; Klimecki, W.; Wilkinson, S.T.; Loh, M.

2014-01-01

Mine tailings are a source of metal exposures in many rural communities. Multiple air samples are necessary to assess the extent of exposures and factors contributing to these exposures. However, air sampling equipment is costly and requires trained personnel to obtain measurements, limiting the number of samples that can be collected. Simple, low-cost methods are needed to allow for increased sample collection. The objective of our study was to assess if dust fall filters can serve as passive air samplers and be used to characterize potential exposures in a community near contaminated mine tailings. We placed filters in cylinders, concurrently with active indoor air samplers, in 10 occupied homes. We calculated an estimated flow rate by dividing the mass on each dust fall filter by the bulk air concentration and the sampling duration. The mean estimated flow rate for dust fall filters was significantly different during sampling periods with precipitation. The estimated flow rate was used to estimate metal concentration in the air of these homes, as well as in 31 additional homes in another rural community impacted by contaminated mine tailings. The estimated air concentrations had a significant linear association with the measured air concentrations for beryllium, manganese and arsenic (p<0.05), whose primary source in indoor air is resuspended soil from outdoors. In the second rural community, our estimated metal concentrations in air were comparable to active air sampling measurements taken previously. This passive air sampler is a simple low-cost method to assess potential exposures near contaminated mining sites. PMID:24469149

Filter for on-line air monitor unaffected by radon progeny and method of using same

DOEpatents

Phillips, Terrance D.; Edwards, Howard D.

1999-01-01

An apparatus for testing air having contaminants and radon progeny therein. The apparatus includes a sampling box having an inlet for receiving the air and an outlet for discharging the air. The sampling box includes a filter made of a plate of sintered stainless steel. The filter traps the contaminants, yet allows at least a portion of the radon progeny to pass therethrough. A method of testing air having contaminants and radon progeny therein. The method includes providing a testing apparatus that has a sampling box with an inlet for receiving the air and an outlet for discharging the air, and has a sintered stainless steel filter disposed within said sampling box; drawing air from a source into the sampling box using a vacuum pump; passing the air through the filter; monitoring the contaminants trapped by the filter; and providing an alarm when a selected level of contaminants is reached. The filter traps the contaminants, yet allows at least a portion of the radon progeny to pass therethrough.

The spectral changes of deforestation in the Brazilian tropical savanna.

PubMed

Trancoso, Ralph; Sano, Edson E; Meneses, Paulo R

2015-01-01

The Cerrado is a biome in Brazil that is experiencing the most rapid loss in natural vegetation. The objective of this study was to analyze the changes in the spectral response in the red, near infrared (NIR), middle infrared (MIR), and normalized difference vegetation index (NDVI) when native vegetation in the Cerrado is deforested. The test sites were regions of the Cerrado located in the states of Bahia, Minas Gerais, and Mato Grosso. For each region, a pair of Landsat Thematic Mapper (TM) scenes from 2008 (before deforestation) and 2009 (after deforestation) was compared. A set of 1,380 samples of deforested polygons and an equal number of samples of native vegetation have their spectral properties statistically analyzed. The accuracy of deforestation detections was also evaluated using high spatial resolution imagery. Results showed that the spectral data of deforested areas and their corresponding native vegetation were statistically different. The red band showed the highest difference between the reflectance data from deforested areas and native vegetation, while the NIR band showed the lowest difference. A consistent pattern of spectral change when native vegetation in the Cerrado is deforested was identified regardless of the location in the biome. The overall accuracy of deforestation detections was 97.75%. Considering both the marked pattern of spectral changes and the high deforestation detection accuracy, this study suggests that deforestation in Cerrado can be accurately monitored, but a strong seasonal and spatial variability of spectral changes might be expected.

Study of protein folding under native conditions by rapidly switching the hydrostatic pressure inside an NMR sample cell

PubMed Central

Charlier, Cyril; Alderson, T. Reid; Courtney, Joseph M.; Ying, Jinfa; Anfinrud, Philip

2018-01-01

In general, small proteins rapidly fold on the timescale of milliseconds or less. For proteins with a substantial volume difference between the folded and unfolded states, their thermodynamic equilibrium can be altered by varying the hydrostatic pressure. Using a pressure-sensitized mutant of ubiquitin, we demonstrate that rapidly switching the pressure within an NMR sample cell enables study of the unfolded protein under native conditions and, vice versa, study of the native protein under denaturing conditions. This approach makes it possible to record 2D and 3D NMR spectra of the unfolded protein at atmospheric pressure, providing residue-specific information on the folding process. 15N and 13C chemical shifts measured immediately after dropping the pressure from 2.5 kbar (favoring unfolding) to 1 bar (native) are close to the random-coil chemical shifts observed for a large, disordered peptide fragment of the protein. However, 15N relaxation data show evidence for rapid exchange, on a ∼100-μs timescale, between the unfolded state and unstable, structured states that can be considered as failed folding events. The NMR data also provide direct evidence for parallel folding pathways, with approximately one-half of the protein molecules efficiently folding through an on-pathway kinetic intermediate, whereas the other half fold in a single step. At protein concentrations above ∼300 μM, oligomeric off-pathway intermediates compete with folding of the native state. PMID:29666248

Airborne detection and quantification of swine influenza a virus in air samples collected inside, outside and downwind from swine barns.

PubMed

Corzo, Cesar A; Culhane, Marie; Dee, Scott; Morrison, Robert B; Torremorell, Montserrat

2013-01-01

Airborne transmission of influenza A virus (IAV) in swine is speculated to be an important route of virus dissemination, but data are scarce. This study attempted to detect and quantify airborne IAV by virus isolation and RRT-PCR in air samples collected under field conditions. This was accomplished by collecting air samples from four acutely infected pig farms and locating air samplers inside the barns, at the external exhaust fans and downwind from the farms at distances up to 2.1 km. IAV was detected in air samples collected in 3 out of 4 farms included in the study. Isolation of IAV was possible from air samples collected inside the barn at two of the farms and in one farm from the exhausted air. Between 13% and 100% of samples collected inside the barns tested RRT-PCR positive with an average viral load of 3.20E+05 IAV RNA copies/m³ of air. Percentage of exhaust positive air samples also ranged between 13% and 100% with an average viral load of 1.79E+04 RNA copies/m³ of air. Influenza virus RNA was detected in air samples collected between 1.5 and 2.1 Km away from the farms with viral levels significantly lower at 4.65E+03 RNA copies/m³. H1N1, H1N2 and H3N2 subtypes were detected in the air samples and the hemagglutinin gene sequences identified in the swine samples matched those in aerosols providing evidence that the viruses detected in the aerosols originated from the pigs in the farms under study. Overall our results indicate that pigs can be a source of IAV infectious aerosols and that these aerosols can be exhausted from pig barns and be transported downwind. The results from this study provide evidence of the risk of aerosol transmission in pigs under field conditions.

Airborne Detection and Quantification of Swine Influenza A Virus in Air Samples Collected Inside, Outside and Downwind from Swine Barns

PubMed Central

Corzo, Cesar A.; Culhane, Marie; Dee, Scott; Morrison, Robert B.; Torremorell, Montserrat

2013-01-01

Airborne transmission of influenza A virus (IAV) in swine is speculated to be an important route of virus dissemination, but data are scarce. This study attempted to detect and quantify airborne IAV by virus isolation and RRT-PCR in air samples collected under field conditions. This was accomplished by collecting air samples from four acutely infected pig farms and locating air samplers inside the barns, at the external exhaust fans and downwind from the farms at distances up to 2.1 km. IAV was detected in air samples collected in 3 out of 4 farms included in the study. Isolation of IAV was possible from air samples collected inside the barn at two of the farms and in one farm from the exhausted air. Between 13% and 100% of samples collected inside the barns tested RRT-PCR positive with an average viral load of 3.20E+05 IAV RNA copies/m3 of air. Percentage of exhaust positive air samples also ranged between 13% and 100% with an average viral load of 1.79E+04 RNA copies/m3 of air. Influenza virus RNA was detected in air samples collected between 1.5 and 2.1 Km away from the farms with viral levels significantly lower at 4.65E+03 RNA copies/m3. H1N1, H1N2 and H3N2 subtypes were detected in the air samples and the hemagglutinin gene sequences identified in the swine samples matched those in aerosols providing evidence that the viruses detected in the aerosols originated from the pigs in the farms under study. Overall our results indicate that pigs can be a source of IAV infectious aerosols and that these aerosols can be exhausted from pig barns and be transported downwind. The results from this study provide evidence of the risk of aerosol transmission in pigs under field conditions. PMID:23951164

Non-Native Plant Invasion along Elevation and Canopy Closure Gradients in a Middle Rocky Mountain Ecosystem

PubMed Central

Averett, Joshua P.; McCune, Bruce; Parks, Catherine G.; Naylor, Bridgett J.; DelCurto, Tim; Mata-González, Ricardo

2016-01-01

Mountain environments are currently among the ecosystems least invaded by non-native species; however, mountains are increasingly under threat of non-native plant invasion. The slow pace of exotic plant invasions in mountain ecosystems is likely due to a combination of low anthropogenic disturbances, low propagule supply, and extreme/steep environmental gradients. The importance of any one of these factors is debated and likely ecosystem dependent. We evaluated the importance of various correlates of plant invasions in the Wallowa Mountain Range of northeastern Oregon and explored whether non-native species distributions differed from native species along an elevation gradient. Vascular plant communities were sampled in summer 2012 along three mountain roads. Transects (n = 20) were evenly stratified by elevation (~70 m intervals) along each road. Vascular plant species abundances and environmental parameters were measured. We used indicator species analysis to identify habitat affinities for non-native species. Plots were ordinated in species space, joint plots and non-parametric multiplicative regression were used to relate species and community variation to environmental variables. Non-native species richness decreased continuously with increasing elevation. In contrast, native species richness displayed a unimodal distribution with maximum richness occurring at mid–elevations. Species composition was strongly related to elevation and canopy openness. Overlays of trait and environmental factors onto non-metric multidimensional ordinations identified the montane-subalpine community transition and over-story canopy closure exceeding 60% as potential barriers to non-native species establishment. Unlike native species, non-native species showed little evidence for high-elevation or closed-canopy specialization. These data suggest that non-native plants currently found in the Wallowa Mountains are dependent on open canopies and disturbance for establishment in low and mid elevations. Current management objectives including restoration to more open canopies in dry Rocky Mountain forests, may increase immigration pressure of non-native plants from lower elevations into the montane and subalpine zones. PMID:26824750

Non-Native Plant Invasion along Elevation and Canopy Closure Gradients in a Middle Rocky Mountain Ecosystem.

PubMed

Averett, Joshua P; McCune, Bruce; Parks, Catherine G; Naylor, Bridgett J; DelCurto, Tim; Mata-González, Ricardo

2016-01-01

Mountain environments are currently among the ecosystems least invaded by non-native species; however, mountains are increasingly under threat of non-native plant invasion. The slow pace of exotic plant invasions in mountain ecosystems is likely due to a combination of low anthropogenic disturbances, low propagule supply, and extreme/steep environmental gradients. The importance of any one of these factors is debated and likely ecosystem dependent. We evaluated the importance of various correlates of plant invasions in the Wallowa Mountain Range of northeastern Oregon and explored whether non-native species distributions differed from native species along an elevation gradient. Vascular plant communities were sampled in summer 2012 along three mountain roads. Transects (n = 20) were evenly stratified by elevation (~70 m intervals) along each road. Vascular plant species abundances and environmental parameters were measured. We used indicator species analysis to identify habitat affinities for non-native species. Plots were ordinated in species space, joint plots and non-parametric multiplicative regression were used to relate species and community variation to environmental variables. Non-native species richness decreased continuously with increasing elevation. In contrast, native species richness displayed a unimodal distribution with maximum richness occurring at mid-elevations. Species composition was strongly related to elevation and canopy openness. Overlays of trait and environmental factors onto non-metric multidimensional ordinations identified the montane-subalpine community transition and over-story canopy closure exceeding 60% as potential barriers to non-native species establishment. Unlike native species, non-native species showed little evidence for high-elevation or closed-canopy specialization. These data suggest that non-native plants currently found in the Wallowa Mountains are dependent on open canopies and disturbance for establishment in low and mid elevations. Current management objectives including restoration to more open canopies in dry Rocky Mountain forests, may increase immigration pressure of non-native plants from lower elevations into the montane and subalpine zones.

Detection of avian malaria (Plasmodium spp.) in native land birds of American Samoa

USGS Publications Warehouse

Jarvi, S.I.; Farias, M.E.M.; Baker, H.; Freifeld, H.B.; Baker, P.E.; Van Gelder, E.; Massey, J.G.; Atkinson, C.T.

2003-01-01

This study documents the presence of Plasmodium spp. in landbirds of central Polynesia. Blood samples collected from eight native and introduced species from the island of Tutuila, American Samoa were evaluated for the presence of Plasmodium spp. by nested rDNA PCR, serology and/or microscopy. A total of 111/188 birds (59%) screened by nested PCR were positive. Detection of Plasmodium spp. was verified by nucleotide sequence comparisons of partial 18S ribosomal RNA and TRAP (thrombospondin-related anonymous protein) genes using phylogenetic analyses. All samples screened by immunoblot to detect antibodies that cross-react with Hawaiian isolates of Plasmodium relictum (153) were negative. Lack of cross-reactivity is probably due to antigenic differences between the Hawaiian and Samoan Plasmodium isolates. Similarly, all samples examined by microscopy (214) were negative. The fact that malaria is present, but not detectable by blood smear evaluation is consistent with low peripheral parasitemia characteristic of chronic infections. High prevalence of apparently chronic infections, the relative stability of the native land bird communities, and the presence of mosquito vectors which are considered endemic and capable of transmitting avian Plasmodia, suggest that these parasites are indigenous to Samoa and have a long coevolutionary history with their hosts.

A population-based evolutionary search approach to the multiple minima problem in de novo protein structure prediction

PubMed Central

2013-01-01

Background Elucidating the native structure of a protein molecule from its sequence of amino acids, a problem known as de novo structure prediction, is a long standing challenge in computational structural biology. Difficulties in silico arise due to the high dimensionality of the protein conformational space and the ruggedness of the associated energy surface. The issue of multiple minima is a particularly troublesome hallmark of energy surfaces probed with current energy functions. In contrast to the true energy surface, these surfaces are weakly-funneled and rich in comparably deep minima populated by non-native structures. For this reason, many algorithms seek to be inclusive and obtain a broad view of the low-energy regions through an ensemble of low-energy (decoy) conformations. Conformational diversity in this ensemble is key to increasing the likelihood that the native structure has been captured. Methods We propose an evolutionary search approach to address the multiple-minima problem in decoy sampling for de novo structure prediction. Two population-based evolutionary search algorithms are presented that follow the basic approach of treating conformations as individuals in an evolving population. Coarse graining and molecular fragment replacement are used to efficiently obtain protein-like child conformations from parents. Potential energy is used both to bias parent selection and determine which subset of parents and children will be retained in the evolving population. The effect on the decoy ensemble of sampling minima directly is measured by additionally mapping a conformation to its nearest local minimum before considering it for retainment. The resulting memetic algorithm thus evolves not just a population of conformations but a population of local minima. Results and conclusions Results show that both algorithms are effective in terms of sampling conformations in proximity of the known native structure. The additional minimization is shown to be key to enhancing sampling capability and obtaining a diverse ensemble of decoy conformations, circumventing premature convergence to sub-optimal regions in the conformational space, and approaching the native structure with proximity that is comparable to state-of-the-art decoy sampling methods. The results are shown to be robust and valid when using two representative state-of-the-art coarse-grained energy functions. PMID:24565020

U.S.-MEXICO BORDER PROGRAM ARIZONA BORDER STUDY--METALS IN AIR ANALYTICAL RESULTS

EPA Science Inventory

The Metals in Air data set contains analytical results for measurements of up to 11 metals in 344 air samples over 86 households. Samples were taken by pumping standardized air volumes through filters at indoor and outdoor sites around each household being sampled. The primary ...

Electron cryo-tomography captures macromolecular complexes in native environments.

PubMed

Baker, Lindsay A; Grange, Michael; Grünewald, Kay

2017-10-01

Transmission electron microscopy has a long history in cellular biology. Fixed and stained samples have been used for cellular imaging for over 50 years, but suffer from sample preparation induced artifacts. Electron cryo-tomography (cryoET) instead uses frozen-hydrated samples, without chemical modification, to determine the structure of macromolecular complexes in their native environment. Recent developments in electron microscopes and associated technologies have greatly expanded our ability to visualize cellular features and determine the structures of macromolecular complexes in situ. This review highlights the technological improvements and the new areas of biology these advances have made accessible. We discuss the potential of cryoET to reveal novel and significant biological information on the nanometer or subnanometer scale, and directions for further work. Copyright © 2017. Published by Elsevier Ltd.

Health care usage among immigrants and native-born elderly populations in eleven European countries: results from SHARE

PubMed Central

Guillén, Montserrat; Crimmins, Eileen M.

2013-01-01

Differences in health care utilization of immigrants 50 years of age and older relative to the native-born populations in eleven European countries are investigated. Negative binomial and zero-inflated Poisson regression are used to examine differences between immigrants and native-borns in number of doctor visits, visits to general practitioners, and hospital stays using the 2004 Survey of Health, Ageing, and Retirement in Europe database. In the pooled European sample and in some individual countries, older immigrants use from 13 to 20% more health services than native-borns after demographic characteristics are controlled. After controlling for the need for health care, differences between immigrants and native-borns in the use of physicians, but not hospitals, are reduced by about half. These are not changed much with the incorporation of indicators of socioeconomic status and extra insurance coverage. Higher country-level relative expenditures on health, paying physicians a fee-for-service, and physician density are associated with higher usage of physician services among immigrants. PMID:21660564

Methodological Choices in Rating Speech Samples

ERIC Educational Resources Information Center

O'Brien, Mary Grantham

2016-01-01

Much pronunciation research critically relies upon listeners' judgments of speech samples, but researchers have rarely examined the impact of methodological choices. In the current study, 30 German native listeners and 42 German L2 learners (L1 English) rated speech samples produced by English-German L2 learners along three continua: accentedness,…

An iterative and targeted sampling design informed by habitat suitability models for detecting focal plant species over extensive areas.

PubMed

Wang, Ophelia; Zachmann, Luke J; Sesnie, Steven E; Olsson, Aaryn D; Dickson, Brett G

2014-01-01

Prioritizing areas for management of non-native invasive plants is critical, as invasive plants can negatively impact plant community structure. Extensive and multi-jurisdictional inventories are essential to prioritize actions aimed at mitigating the impact of invasions and changes in disturbance regimes. However, previous work devoted little effort to devising sampling methods sufficient to assess the scope of multi-jurisdictional invasion over extensive areas. Here we describe a large-scale sampling design that used species occurrence data, habitat suitability models, and iterative and targeted sampling efforts to sample five species and satisfy two key management objectives: 1) detecting non-native invasive plants across previously unsampled gradients, and 2) characterizing the distribution of non-native invasive plants at landscape to regional scales. Habitat suitability models of five species were based on occurrence records and predictor variables derived from topography, precipitation, and remotely sensed data. We stratified and established field sampling locations according to predicted habitat suitability and phenological, substrate, and logistical constraints. Across previously unvisited areas, we detected at least one of our focal species on 77% of plots. In turn, we used detections from 2011 to improve habitat suitability models and sampling efforts in 2012, as well as additional spatial constraints to increase detections. These modifications resulted in a 96% detection rate at plots. The range of habitat suitability values that identified highly and less suitable habitats and their environmental conditions corresponded to field detections with mixed levels of agreement. Our study demonstrated that an iterative and targeted sampling framework can address sampling bias, reduce time costs, and increase detections. Other studies can extend the sampling framework to develop methods in other ecosystems to provide detection data. The sampling methods implemented here provide a meaningful tool when understanding the potential distribution and habitat of species over multi-jurisdictional and extensive areas is needed for achieving management objectives.

An Iterative and Targeted Sampling Design Informed by Habitat Suitability Models for Detecting Focal Plant Species over Extensive Areas

PubMed Central

Wang, Ophelia; Zachmann, Luke J.; Sesnie, Steven E.; Olsson, Aaryn D.; Dickson, Brett G.

2014-01-01

Prioritizing areas for management of non-native invasive plants is critical, as invasive plants can negatively impact plant community structure. Extensive and multi-jurisdictional inventories are essential to prioritize actions aimed at mitigating the impact of invasions and changes in disturbance regimes. However, previous work devoted little effort to devising sampling methods sufficient to assess the scope of multi-jurisdictional invasion over extensive areas. Here we describe a large-scale sampling design that used species occurrence data, habitat suitability models, and iterative and targeted sampling efforts to sample five species and satisfy two key management objectives: 1) detecting non-native invasive plants across previously unsampled gradients, and 2) characterizing the distribution of non-native invasive plants at landscape to regional scales. Habitat suitability models of five species were based on occurrence records and predictor variables derived from topography, precipitation, and remotely sensed data. We stratified and established field sampling locations according to predicted habitat suitability and phenological, substrate, and logistical constraints. Across previously unvisited areas, we detected at least one of our focal species on 77% of plots. In turn, we used detections from 2011 to improve habitat suitability models and sampling efforts in 2012, as well as additional spatial constraints to increase detections. These modifications resulted in a 96% detection rate at plots. The range of habitat suitability values that identified highly and less suitable habitats and their environmental conditions corresponded to field detections with mixed levels of agreement. Our study demonstrated that an iterative and targeted sampling framework can address sampling bias, reduce time costs, and increase detections. Other studies can extend the sampling framework to develop methods in other ecosystems to provide detection data. The sampling methods implemented here provide a meaningful tool when understanding the potential distribution and habitat of species over multi-jurisdictional and extensive areas is needed for achieving management objectives. PMID:25019621

NHEXAS PHASE I ARIZONA STUDY--STANDARD OPERATING PROCEDURE FOR PREPARATION OF FILTERS AND PUF FOR FIELD COLLECTION OF METALS AND PESTICIDES IN AIR (BCO-L-2.0)

EPA Science Inventory

The purpose of this SOP is to describe the procedures for pre-cleaning filters and polyurethane foam (PUF) plug prior to air sampling with these media. The sampling media are used for sampling indoor air, outdoor air, and personal air. This procedure was followed to ensure consi...

An automated atmospheric sampling system operating on 747 airliners

NASA Technical Reports Server (NTRS)

Perkins, P.; Gustafsson, U. R. C.

1975-01-01

An air sampling system that automatically measures the temporal and spatial distribution of selected particulate and gaseous constituents of the atmosphere has been installed on a number of commercial airliners and is collecting data on commercial air routes covering the world. Measurements of constituents related to aircraft engine emissions and other pollutants are made in the upper troposphere and lower stratosphere (6 to 12 km) in support of the Global Air Sampling Program (GASP). Aircraft operated by different airlines sample air at latitudes from the Arctic to Australia. This system includes specialized instrumentation for measuring carbon monoxide, ozone, water vapor, and particulates, a special air inlet probe for sampling outside air, a computerized automatic control, and a data acquisition system. Air constituents and related flight data are tape recorded in flight for later computer processing on the ground.

HIGH VOLUME INJECTION FOR GCMS ANALYSIS OF PARTICULATE ORGANIC SPECIES IN AMBIENT AIR

EPA Science Inventory

Detection of organic species in ambient particulate matter typically requires large air sample volumes, frequently achieved by grouping samples into monthly composites. Decreasing the volume of air sample required would allow shorter collection times and more convenient sample c...

Anti HIV-2 serological screening in Portuguese populations native from or having had close contact with Africa.

PubMed

Saal, F; Sidibe, S; Alves-Cardoso, E; Terrinha, A; Gessain, A; Poirot, Y; Montagnier, L; Peries, J

1987-01-01

To gather epidemiologic information on the spread of human immunodeficiency virus (HIV)-2 in Portugal, sera were collected in 1985 from 156 healthy adults currently living in Portugal but natives of Guinea Bissau, Cape Verde Islands, Saint Tome/Prince, Angola, and Mozambique and from 321 native Portuguese men and women who had close contact with local African populations. As a control, sera were collected from 102 health Portuguese with no previous contact with Africa or African natives. The enzyme-linked immunosorbent assay (ELISA) developed by Diagnostic Pasteur was used to screen for antibodies to HIV. No positive reactions were recorded in the control population. In contracts, 9 (6%) of the African natives and 7 (2%) of the contacts of Africans were HIV-positive, 6 of the positive sera were from women and 10 were from men. Significantly, 1 of the HIV-2-positive serum samples was from a native of Mozambique and 3 were from natives of Angola. This suggests that HIV-2 infection may have spread to other former Portuguese colonies, and foreign army soldiers who were at 1 time residents of Mozambique or Angola should be considered a risk group capable of spreading HIV-2 infection to other countries.

Extensive analysis of native and non-native Centaurea solstitialis L. populations across the world shows no traces of polyploidization

PubMed Central

Montesinos, Daniel; Eren, Özkan; Lortie, Christopher J.; French, Kristine; Cavieres, Lohengrin A.; Sotes, Gastón J.; Hierro, José L.; Jorge, Andreia; Loureiro, João

2017-01-01

Centaurea solstitialis L. (yellow starthistle, Asteraceae) is a Eurasian native plant introduced as an exotic into North and South America, and Australia, where it is regarded as a noxious invasive. Changes in ploidy level have been found to be responsible for numerous plant biological invasions, as they are involved in trait shifts critical to invasive success, like increased growth rate and biomass, longer life-span, or polycarpy. C. solstitialis had been reported to be diploid (2n = 2x = 16 chromosomes), however, actual data are scarce and sometimes contradictory. We determined for the first time the absolute nuclear DNA content by flow cytometry and estimated ploidy level in 52 natural populations of C. solstitialis across its native and non-native ranges, around the world. All the C. solstitialis populations screened were found to be homogeneously diploid (average 2C value of 1.72 pg, SD = ±0.06 pg), with no significant variation in DNA content between invasive and non-invasive genotypes. We did not find any meaningful difference among the extensive number of native and non-native C. solstitialis populations sampled around the globe, indicating that the species invasive success is not due to changes in genome size or ploidy level. PMID:28828232

Extensive analysis of native and non-native Centaurea solstitialis L. populations across the world shows no traces of polyploidization.

PubMed

Irimia, Ramona-Elena; Montesinos, Daniel; Eren, Özkan; Lortie, Christopher J; French, Kristine; Cavieres, Lohengrin A; Sotes, Gastón J; Hierro, José L; Jorge, Andreia; Loureiro, João

2017-01-01

Centaurea solstitialis L. (yellow starthistle, Asteraceae) is a Eurasian native plant introduced as an exotic into North and South America, and Australia, where it is regarded as a noxious invasive. Changes in ploidy level have been found to be responsible for numerous plant biological invasions, as they are involved in trait shifts critical to invasive success, like increased growth rate and biomass, longer life-span, or polycarpy. C . solstitialis had been reported to be diploid (2 n  = 2 x  = 16 chromosomes), however, actual data are scarce and sometimes contradictory. We determined for the first time the absolute nuclear DNA content by flow cytometry and estimated ploidy level in 52 natural populations of C . solstitialis across its native and non-native ranges, around the world. All the C. solstitialis populations screened were found to be homogeneously diploid (average 2C value of 1.72 pg, SD = ±0.06 pg), with no significant variation in DNA content between invasive and non-invasive genotypes. We did not find any meaningful difference among the extensive number of native and non-native C . solstitialis populations sampled around the globe, indicating that the species invasive success is not due to changes in genome size or ploidy level.

Biodiversity, photosynthetic mode, and ecosystem services differ between native and novel ecosystems.

PubMed

Martin, Leanne M; Polley, H Wayne; Daneshgar, Pedram P; Harris, Mary A; Wilsey, Brian J

2014-06-01

Human activities have caused non-native plant species with novel ecological interactions to persist on landscapes, and it remains controversial whether these species alter multiple aspects of communities and ecosystems. We tested whether native and exotic grasslands differ in species diversity, ecosystem services, and an important aspect of functional diversity (C3:C4 proportions) by sampling 42 sites along a latitudinal gradient and conducting a controlled experiment. Exotic-dominated grasslands had drastically lower plant diversity and slightly higher tissue N concentrations and forage quality compared to native-dominated sites. Exotic sites were strongly dominated by C4 species at southern and C3 species at northern latitudes with a sharp transition at 36-38°, whereas native sites contained C3:C4 mixtures. Large differences in C3:C4 proportions and temporal niche partitioning were found between native and exotic mixtures in the experiment, implying that differences in C3:C4 proportions along the latitudinal gradient are caused partially by species themselves. Our results indicate that the replacement of native- by exotic-dominated grasslands has created a management tradeoff (high diversity versus high levels of certain ecosystem services) and that models of global change impacts and C3/C4 distribution should consider effects of exotic species.

Surface-dwelling and subterranean invertebrate fauna associated with giant reed (Arundo donax Poaceae) in Southern California

USGS Publications Warehouse

Lovich, Robert E.; Ervin, Edward L.; Fisher, Robert N.

2009-01-01

In the southwestern United States giant reed, Arundo donax, is a non-native invasive plant that has become widely established in moist places and forms its largest stands along riparian corridors. The most widely reported negative effects include competition with native species, increased rate of transpiration, increased potential for wildfires, and stream channel and bank alteration. However, little is known about the faunal communities associated with this plant and the potential effects on native fauna. In this study, we focused our efforts on determining the faunal composition specifically from rhizome clumps of A. donax from a site located along the Santa Margarita River in San Diego County, California. A total of 2590 individual macro-invertebrates were collected and identified, and represented 64 species from 7 classes. No sensitive species and few vertebrates were found to be in association with A. donax rhizome clumps. Four non-native invertebrate species made up 43% of the total number of captured invertebrates, and 31% of the sampled invertebrates were confirmed as native species. This study demonstrates that A. donax rhizome clumps, and the soils associated with them, provide habitat for several native macro-invertebrate species, but can be dominated by a greater abundance of non-native species.

Forensic Applicability of Femur Subtrochanteric Shape to Ancestry Assessment in Thai and White American Males.

PubMed

Tallman, Sean D; Winburn, Allysha P

2015-09-01

Ancestry assessment from the postcranial skeleton presents a significant challenge to forensic anthropologists. However, metric dimensions of the femur subtrochanteric region are believed to distinguish between individuals of Asian and non-Asian descent. This study tests the discriminatory power of subtrochanteric shape using modern samples of 128 Thai and 77 White American males. Results indicate that the samples' platymeric index distributions are significantly different (p≤0.001), with the Thai platymeric index range generally lower and the White American range generally higher. While the application of ancestry assessment methods developed from Native American subtrochanteric data results in low correct classification rates for the Thai sample (50.8-57.8%), adapting these methods to the current samples leads to better classification. The Thai data may be more useful in forensic analysis than previously published subtrochanteric data derived from Native American samples. Adapting methods to include appropriate geographic and contemporaneous populations increases the accuracy of femur subtrochanteric ancestry methods. © 2015 American Academy of Forensic Sciences.

Monitoring airborne fungal spores in an experimental indoor environment to evaluate sampling methods and the effects of human activity on air sampling.

PubMed Central

Buttner, M P; Stetzenbach, L D

1993-01-01

Aerobiological monitoring was conducted in an experimental room to aid in the development of standardized sampling protocols for airborne microorganisms in the indoor environment. The objectives of this research were to evaluate the relative efficiencies of selected sampling methods for the retrieval of airborne fungal spores and to determine the effect of human activity on air sampling. Dry aerosols containing known concentrations of Penicillium chrysogenum spores were generated, and air samples were taken by using Andersen six-stage, Surface Air System, Burkard, and depositional samplers. The Andersen and Burkard samplers retrieved the highest numbers of spores compared with the measurement standard, an aerodynamic particle sizer located inside the room. Data from paired samplers demonstrated that the Andersen sampler had the highest levels of sensitivity and repeatability. With a carpet as the source of P. chrysogenum spores, the effects of human activity (walking or vacuuming near the sampling site) on air sampling were also examined. Air samples were taken under undisturbed conditions and after human activity in the room. Human activity resulted in retrieval of significantly higher concentrations of airborne spores. Surface sampling of the carpet revealed moderate to heavy contamination despite relatively low airborne counts. Therefore, in certain situations, air sampling without concomitant surface sampling may not adequately reflect the level of microbial contamination in indoor environments. PMID:8439150

Rapid assessment of target species: Byssate bivalves in a large tropical port.

PubMed

Minchin, Dan; Olenin, Sergej; Liu, Ta-Kang; Cheng, Muhan; Huang, Sheng-Chih

2016-11-15

Rapid assessment sampling for target species is a fast cost-effective method aimed at determining the presence, abundance and distribution of alien and native harmful aquatic organisms and pathogens that may have been introduced by shipping. In this study, the method was applied within a large tropical port expected to have a high species diversity. The port of Kaohsiung was sampled for bivalve molluscan species that attach using a byssus. Such species, due to their biological traits, are spread by ships to ports worldwide. We estimated the abundance and distribution range of one dreissenid (Mytilopsis sallei) and four mytilids (Brachidontes variabilis, Arcuatula senhousa, Mytilus galloprovincialis, Perna viridis) known to be successful invaders and identified as potential pests, or high-risk harmful native or non-native species. We conclude that a rapid assessment of their abundance and distribution within a port, and its vicinity, is efficient and can provide sufficient information for decision making by port managers where IMO port exemptions may be sought. Copyright © 2016. Published by Elsevier Ltd.

The effect of lizardite surface characteristics on pyrite flotation

NASA Astrophysics Data System (ADS)

Feng, Bo; Feng, Qiming; Lu, Yiping

2012-10-01

The effect of lizardite surface characteristics on pyrite flotation has been investigated through flotation tests, adsorption tests, zeta potential measurements, FTIR study, X-ray photoelectron spectroscopy (XPS) and sedimentation tests. The flotation results show that at pH value 9, where flotation of nickel sulfide ores is routinely performed, two kinds of lizardite samples (native lizardite and leached lizardite) have different effects on the flotation of pyrite. The native lizardite adheres to the surface of pyrite and reduces pyrite flotation recovery while the leached lizardite does not interfere with pyrite flotation. Infrared analyses and XPS tests illustrate that acid leaching changed the surface characteristics of lizardite mineral and the leached lizardite has less magnesium on its surface. It has been determined that the electro-kinetic behavior of lizardite aqueous suspensions is mainly a function of the Mg/Si atomic ratio on lizardite surface. So, the low isoelectric point observed in the leached sample has been linked to values of this ratio lower than that of the native lizardite.

Ab initio folding of proteins using all-atom discrete molecular dynamics

PubMed Central

Ding, Feng; Tsao, Douglas; Nie, Huifen; Dokholyan, Nikolay V.

2008-01-01

Summary Discrete molecular dynamics (DMD) is a rapid sampling method used in protein folding and aggregation studies. Until now, DMD was used to perform simulations of simplified protein models in conjunction with structure-based force fields. Here, we develop an all-atom protein model and a transferable force field featuring packing, solvation, and environment-dependent hydrogen bond interactions. Using the replica exchange method, we perform folding simulations of six small proteins (20–60 residues) with distinct native structures. In all cases, native or near-native states are reached in simulations. For three small proteins, multiple folding transitions are observed and the computationally-characterized thermodynamics are in quantitative agreement with experiments. The predictive power of all-atom DMD highlights the importance of environment-dependent hydrogen bond interactions in modeling protein folding. The developed approach can be used for accurate and rapid sampling of conformational spaces of proteins and protein-protein complexes, and applied to protein engineering and design of protein-protein interactions. PMID:18611374

Characterization and quantitation of anthocyanins and other phenolics in native Andean potatoes.

PubMed

Giusti, M Monica; Polit, Maria Fernanda; Ayvaz, Huseyin; Tay, David; Manrique, Ivan

2014-05-14

Andean potatoes are gaining popularity not only for their appealing colors and culinary uses but also for their potential higher content of polyphenolic compounds. The objective of this study was to identify potato varieties with increased phenolic content. This was achieved through characterization and quantitation of the phenolic composition in 20 varieties of native Andean potatoes from 4 different Solanum species with different colors. Major quantitative and qualitative differences among evaluated samples were more dependent on the coloration of the extracted sample rather than on the species. The most predominant anthocyanidins were petunidin-3-coumaroylrutinoside-5-glucoside and pelargonidin-3-coumaroylrutinoside-5-glucoside in purple and red potato extracts, respectively, while chlorogenic acid and its isomers were the main phenolic compund (43% of the total phenolic content). Our study suggested that the appropriate selection of native potatoes could provide new sources of polyphenolics with health promoting properties and natural pigments with increased stability for food applications.

Effect of heat-moisture treatment on multi-scale structures and physicochemical properties of breadfruit starch.

PubMed

Tan, Xiaoyan; Li, Xiaoxi; Chen, Ling; Xie, Fengwei; Li, Lin; Huang, Jidong

2017-04-01

Breadfruit starch was subjected to heat-moisture treatment (HMT) at different moisture content (MC). HMT did not apparently change the starch granule morphology but decreased the molecular weight and increased the amylose content. With increased MC, HMT transformed the crystalline structure (B→A+B→A) and decreased the relative crystallinity. With ≥25% MC, the scattering peak at ca. 0.6nm -1 disappeared, suggesting the lamellar structure was damaged. Compared with native starch, HMT-modified samples showed greater thermostability. Increased MC contributed to a higher pasting temperature, lower viscosity, and no breakdown. The pasting temperature of native and HMT samples ranged from 68.8 to 86.2°C. HMT increased the slowly-digestible starch (SDS) and resistant starch (RS) contents. The SDS content was 13.24% with 35% MC, which was 10.25% higher than that of native starch. The increased enzyme resistance could be ascribed to the rearrangement of molecular chains and more compact granule structure. Copyright © 2017 Elsevier Ltd. All rights reserved.

Environmental Assessment for the Privatization and Construction of Single Family Housing in Magnolia Grove, Lowndes County, Georgia

DTIC Science & Technology

2005-05-25

this contract was American Eagle Community Development. 1 According to 10 U.S.C. 2871, the...minority, low- income, disadvantaged, and Native American groups, are urged to participate in the decision making process. The Air Force’s NEPA...slash pine, sycamore (Platanus occidentalis), Chinese tallow, water oak, American beautyberry (Callicarpa americana), Carolina willow, southern red

Supplemental Environmental Assessment:VTRS Fiber Optic Cable Installation on South Base Vandenberg Air Force Base, California

DTIC Science & Technology

2007-11-08

Handbook of North American Indians, vol. 8, William C. Sturtevant, general editor. Smithsonian Institution, Washington , D.C. 1978b Eastern Coastal...of this collection of information, including suggestions for reducing this burden, to Washington Headquarters Services, Directorate for Information...species that are often drought- deciduous and summer- dormant. Dominant native species at this site include California sagebrush (Artemisia

Overseas Military Bases: Understanding Host Nation Support

DTIC Science & Technology

2012-02-15

and do not reflect the official policy or position of the United States government or the Department of Defense. In accordance with Air Force...Instruction 51-303, it is not copyrighted, but is the property of the US government . Biography Commander Jeffrey J. Draeger, an Ohio native...hosting decisions, this study seeks greater awareness of the determinants of host nation hospitality. By examining overseas bases in Ecuador and

Carter Carburetor Weekly Air Monitoring & Sampling Report - March 7, 2013 - March 13, 2016

EPA Pesticide Factsheets

Carter Carburetor Daily Weather Conditions, Dairly Work Activities, Daily Air Monitoring and Samplying Results, Air Monitoring/Samplying Results –Station 2 Linc 126, Air Monitoring/Sampling Results- Sation 3 Linc 123, Air Monitoring/Samplying Results-Stati

Air sampling workshop: October 24-25, 1978

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1979-06-01

A two-day workshop was held in October 1978 on air sampling strategies for the occupational environment. Strategies comprise the elements of implementing an air sampling program including deciding on the extent of sampling, selecting appropriate types of measurement, placing sampling instruments properly, and interpreting sample results correctly. All of these elements are vital in the reliable assessment of occupational exposures yet their coverage in the industrial hygiene literature is meager. Although keyed to a few introductory topics, the agenda was sufficiently informal to accommodate extemporaneous discussion on any subject related to sampling strategies. Questions raised during the workshop mirror themore » status of air sampling strategy as much as the factual information that was presented. It may be concluded from the discussion and questions that air sampling strategy is an elementary state and urgently needs concerted attention from the industrial hygiene profession.« less

An automated atmospheric sampling system operating on 747 airliners

NASA Technical Reports Server (NTRS)

Perkins, P. J.; Gustafsson, U. R. C.

1976-01-01

An air sampling system that automatically measures the temporal and spatial distribution of particulate and gaseous constituents of the atmosphere is collecting data on commercial air routes covering the world. Measurements are made in the upper troposphere and lower stratosphere (6 to 12 km) of constituents related to aircraft engine emissions and other pollutants. Aircraft operated by different airlines sample air at latitudes from the Arctic to Australia. This unique system includes specialized instrumentation, a special air inlet probe for sampling outside air, a computerized automatic control, and a data acquisition system. Air constituent and related flight data are tape recorded in flight for later computer processing on the ground.

RosettaAntibodyDesign (RAbD): A general framework for computational antibody design

PubMed Central

Adolf-Bryfogle, Jared; Kalyuzhniy, Oleks; Kubitz, Michael; Hu, Xiaozhen; Adachi, Yumiko; Schief, William R.

2018-01-01

A structural-bioinformatics-based computational methodology and framework have been developed for the design of antibodies to targets of interest. RosettaAntibodyDesign (RAbD) samples the diverse sequence, structure, and binding space of an antibody to an antigen in highly customizable protocols for the design of antibodies in a broad range of applications. The program samples antibody sequences and structures by grafting structures from a widely accepted set of the canonical clusters of CDRs (North et al., J. Mol. Biol., 406:228–256, 2011). It then performs sequence design according to amino acid sequence profiles of each cluster, and samples CDR backbones using a flexible-backbone design protocol incorporating cluster-based CDR constraints. Starting from an existing experimental or computationally modeled antigen-antibody structure, RAbD can be used to redesign a single CDR or multiple CDRs with loops of different length, conformation, and sequence. We rigorously benchmarked RAbD on a set of 60 diverse antibody–antigen complexes, using two design strategies—optimizing total Rosetta energy and optimizing interface energy alone. We utilized two novel metrics for measuring success in computational protein design. The design risk ratio (DRR) is equal to the frequency of recovery of native CDR lengths and clusters divided by the frequency of sampling of those features during the Monte Carlo design procedure. Ratios greater than 1.0 indicate that the design process is picking out the native more frequently than expected from their sampled rate. We achieved DRRs for the non-H3 CDRs of between 2.4 and 4.0. The antigen risk ratio (ARR) is the ratio of frequencies of the native amino acid types, CDR lengths, and clusters in the output decoys for simulations performed in the presence and absence of the antigen. For CDRs, we achieved cluster ARRs as high as 2.5 for L1 and 1.5 for H2. For sequence design simulations without CDR grafting, the overall recovery for the native amino acid types for residues that contact the antigen in the native structures was 72% in simulations performed in the presence of the antigen and 48% in simulations performed without the antigen, for an ARR of 1.5. For the non-contacting residues, the ARR was 1.08. This shows that the sequence profiles are able to maintain the amino acid types of these conserved, buried sites, while recovery of the exposed, contacting residues requires the presence of the antigen-antibody interface. We tested RAbD experimentally on both a lambda and kappa antibody–antigen complex, successfully improving their affinities 10 to 50 fold by replacing individual CDRs of the native antibody with new CDR lengths and clusters. PMID:29702641

RosettaAntibodyDesign (RAbD): A general framework for computational antibody design.

PubMed

Adolf-Bryfogle, Jared; Kalyuzhniy, Oleks; Kubitz, Michael; Weitzner, Brian D; Hu, Xiaozhen; Adachi, Yumiko; Schief, William R; Dunbrack, Roland L

2018-04-01

A structural-bioinformatics-based computational methodology and framework have been developed for the design of antibodies to targets of interest. RosettaAntibodyDesign (RAbD) samples the diverse sequence, structure, and binding space of an antibody to an antigen in highly customizable protocols for the design of antibodies in a broad range of applications. The program samples antibody sequences and structures by grafting structures from a widely accepted set of the canonical clusters of CDRs (North et al., J. Mol. Biol., 406:228-256, 2011). It then performs sequence design according to amino acid sequence profiles of each cluster, and samples CDR backbones using a flexible-backbone design protocol incorporating cluster-based CDR constraints. Starting from an existing experimental or computationally modeled antigen-antibody structure, RAbD can be used to redesign a single CDR or multiple CDRs with loops of different length, conformation, and sequence. We rigorously benchmarked RAbD on a set of 60 diverse antibody-antigen complexes, using two design strategies-optimizing total Rosetta energy and optimizing interface energy alone. We utilized two novel metrics for measuring success in computational protein design. The design risk ratio (DRR) is equal to the frequency of recovery of native CDR lengths and clusters divided by the frequency of sampling of those features during the Monte Carlo design procedure. Ratios greater than 1.0 indicate that the design process is picking out the native more frequently than expected from their sampled rate. We achieved DRRs for the non-H3 CDRs of between 2.4 and 4.0. The antigen risk ratio (ARR) is the ratio of frequencies of the native amino acid types, CDR lengths, and clusters in the output decoys for simulations performed in the presence and absence of the antigen. For CDRs, we achieved cluster ARRs as high as 2.5 for L1 and 1.5 for H2. For sequence design simulations without CDR grafting, the overall recovery for the native amino acid types for residues that contact the antigen in the native structures was 72% in simulations performed in the presence of the antigen and 48% in simulations performed without the antigen, for an ARR of 1.5. For the non-contacting residues, the ARR was 1.08. This shows that the sequence profiles are able to maintain the amino acid types of these conserved, buried sites, while recovery of the exposed, contacting residues requires the presence of the antigen-antibody interface. We tested RAbD experimentally on both a lambda and kappa antibody-antigen complex, successfully improving their affinities 10 to 50 fold by replacing individual CDRs of the native antibody with new CDR lengths and clusters.

Biases in Total Precipitable Water Vapor Climatologies from Atmospheric Infrared Sounder and Advanced Microwave Scanning Radiometer

NASA Technical Reports Server (NTRS)

Fetzer, Eric J.; Lambrigtsen, Bjorn H.; Eldering, Annmarie; Aumann, Hartmut H.; Chahine, Moustafa T.

2006-01-01

We examine differences in total precipitable water vapor (PWV) from the Atmospheric Infrared Sounder (AIRS) and the Advanced Microwave Scanning Radiometer (AMSR-E) experiments sharing the Aqua spacecraft platform. Both systems provide estimates of PWV over water surfaces. We compare AIRS and AMSR-E PWV to constrain AIRS retrieval uncertainties as functions of AIRS retrieved infrared cloud fraction. PWV differences between the two instruments vary only weakly with infrared cloud fraction up to about 70%. Maps of AIRS-AMSR-E PWV differences vary with location and season. Observational biases, when both instruments observe identical scenes, are generally less than 5%. Exceptions are in cold air outbreaks where AIRS is biased moist by 10-20% or 10-60% (depending on retrieval processing) and at high latitudes in winter where AIRS is dry by 5-10%. Sampling biases, from different sampling characteristics of AIRS and AMSR-E, vary in sign and magnitude. AIRS sampling is dry by up to 30% in most high-latitude regions but moist by 5-15% in subtropical stratus cloud belts. Over the northwest Pacific, AIRS samples conditions more moist than AMSR-E by a much as 60%. We hypothesize that both wet and dry sampling biases are due to the effects of clouds on the AIRS retrieval methodology. The sign and magnitude of these biases depend upon the types of cloud present and on the relationship between clouds and PWV. These results for PWV imply that climatologies of height-resolved water vapor from AIRS must take into consideration local meteorological processes affecting AIRS sampling.

40 CFR 86.537-90 - Dynamometer test runs.

Code of Federal Regulations, 2014 CFR

2014-07-01

... “transient” formaldehyde exhaust sample, the “transient” dilution air sample bag, the “transient” methanol... start “transient” exhaust and dilution air bag samples to the analytical system and process the samples... Section 86.537-90 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR PROGRAMS...

40 CFR 86.537-90 - Dynamometer test runs.

Code of Federal Regulations, 2012 CFR

2012-07-01

... “transient” formaldehyde exhaust sample, the “transient” dilution air sample bag, the “transient” methanol... start “transient” exhaust and dilution air bag samples to the analytical system and process the samples... Section 86.537-90 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR PROGRAMS...

40 CFR 86.537-90 - Dynamometer test runs.

Code of Federal Regulations, 2013 CFR

2013-07-01

... “transient” formaldehyde exhaust sample, the “transient” dilution air sample bag, the “transient” methanol... start “transient” exhaust and dilution air bag samples to the analytical system and process the samples... Section 86.537-90 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR PROGRAMS...

Response of six non-native invasive plant species to wildfires in the northern Rocky Mountains, USA

Treesearch

Dennis E. Ferguson; Christine L. Craig

2010-01-01

This paper presents early results on the response of six non-native invasive plant species to eight wildfires on six National Forests (NFs) in the northern Rocky Mountains, USA. Stratified random sampling was used to choose 224 stands based on burn severity, habitat type series, slope steepness, stand height, and stand density. Data for this report are from 219 stands...

Using delimiting surveys to characterize the spatiotemporal dynamics facilitates the management of an invasive non-native insect

Treesearch

Patrick C. Tobin; Laura M. Blackburn; Rebecca H. Gray; Christopher T. Lettau; Andrew M. Liebhold; Kenneth F. Raffa

2013-01-01

The ability to ascertain abundance and spatial extent of a nascent population of a non-native species can inform management decisions. Following initial detection, delimiting surveys, which involve the use of a finer network of samples around the focal point of a newly detected colony, are often used to quantify colony size, spatial extent, and the location of the...

Serological and molecular typing of HIV type 1 infection in the Tiriyo tribe, a native Indian community of the Amazon region of Brazil.

PubMed

Machado, Luiz F A; Vallinoto, Antonio C R; Souza, Maria I M; Azevedo, Vania N; Ishak, Marluisa O G; Ishak, Ricardo

2006-12-01

The seroprevalence and the occurrence of an HIV-1 subtype was assessed in blood samples of the Tiriyo tribe. Antibody was found in 0.6% and the molecular analysis of the pro region detected the emergence of a subtype B for the first time in a native Indian tribe of the Amazon region of Brazil.

Refusal Strategies of Iranian University English as a Foreign Language and Non-English Learners in Native Language: A Comparative Study

ERIC Educational Resources Information Center

Sa'd, Seyyed Hatam Tamimi; Qadermazi, Zohre

2014-01-01

This study is an attempt to examine the possible effect that exposure to English has had on the use of refusal strategies in English as a Foreign Language (EFL) learners compared with those of non-English learners when refusing in their native language, Persian. The sample included 12 EFL learners and 12 learners of other academic majors including…

Using the PEN-3 Model to Assess Knowledge, Attitudes, and Beliefs about Diabetes Type 2 among Mexican American and Mexican Native Men and Women in North Texas

ERIC Educational Resources Information Center

Melancon, Jim; Oomen-Early, Jody; del Rincon, Lydia M.

2009-01-01

The primary purpose of this mixed-methods study was two-fold: first, to assess diabetes knowledge, attitudes, disease management and self efficacy among a sample of Mexican American (MA) and Mexican-Native (MN) adults living in North Texas; and second, to determine factors which promote or deter diabetes prevention and management using…

Factorial Invariance of the Brief Symptom Inventory-18 (BSI-18) for Adults of Mexican Descent across Nativity Status, Language Format, and Gender

ERIC Educational Resources Information Center

Torres, Lucas; Miller, Matthew J.; Moore, Kelly M.

2013-01-01

The cultural equivalence of psychological outcome measures remains a major area of investigation. The current study sought to test the factor structure and factorial invariance of the Brief Symptom Inventory-18 (BSI-18) with a sample of adult individuals of Mexican descent (N = 923) across nativity status (U.S.- vs. foreign-born), language format…

Linguistic Skills of Adult Native Speakers, as a Function of Age and Level of Education

ERIC Educational Resources Information Center

Mulder, Kimberley; Hulstijn, Jan H.

2011-01-01

This study assessed, in a sample of 98 adult native speakers of Dutch, how their lexical skills and their speaking proficiency varied as a function of their age and level of education and profession (EP). Participants, categorized in terms of their age (18-35, 36-50, and 51-76 years old) and the level of their EP (low versus high), were tested on…

40 CFR 61.34 - Air sampling.

Code of Federal Regulations, 2012 CFR

2012-07-01

... 40 Protection of Environment 9 2012-07-01 2012-07-01 false Air sampling. 61.34 Section 61.34 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR PROGRAMS (CONTINUED) NATIONAL EMISSION STANDARDS FOR HAZARDOUS AIR POLLUTANTS National Emission Standard for Beryllium § 61.34 Air...

40 CFR 61.34 - Air sampling.

Code of Federal Regulations, 2013 CFR

2013-07-01

... 40 Protection of Environment 9 2013-07-01 2013-07-01 false Air sampling. 61.34 Section 61.34 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) AIR PROGRAMS (CONTINUED) NATIONAL EMISSION STANDARDS FOR HAZARDOUS AIR POLLUTANTS National Emission Standard for Beryllium § 61.34 Air...

Carter Carburetor Weekly Air Monitoring & Sampling Report - November 30, 2015 – December 6, 2015

EPA Pesticide Factsheets

Carter Carburetor Daily Weather Conditions, Dairly Work Activities, Daily Air Monitoring and Samplying Results, Air Monitoring/Samplying Results –Station 2 Linc 126, Air Monitoring/Sampling Results- Sation 3 Linc 123, Air Monitoring/Samplying Results-Stati

Carter Carburetor Weekly Air Monitoring & Sampling Report - October 26, 2015 – November 1, 2015

EPA Pesticide Factsheets

Carter Carburetor Daily Weather Conditions, Dairly Work Activities, Daily Air Monitoring and Samplying Results, Air Monitoring/Samplying Results –Station 2 Linc 126, Air Monitoring/Sampling Results- Sation 3 Linc 123, Air Monitoring/Samplying Results-Stati

Carter Carburetor Weekly Air Monitoring & Sampling Report - February 15, 2016 – February 21, 2016

EPA Pesticide Factsheets

Carter Carburetor Daily Weather Conditions, Dairly Work Activities, Daily Air Monitoring and Samplying Results, Air Monitoring/Samplying Results –Station 2 Linc 126, Air Monitoring/Sampling Results- Sation 3 Linc 123, Air Monitoring/Samplying Results-Stati

Carter Carburetor Weekly Air Monitoring & Sampling Report - October 12, 2015 – October 18, 2015

EPA Pesticide Factsheets

Carter Carburetor Daily Weather Conditions, Dairly Work Activities, Daily Air Monitoring and Samplying Results, Air Monitoring/Samplying Results –Station 2 Linc 126, Air Monitoring/Sampling Results- Sation 3 Linc 123, Air Monitoring/Samplying Results-Stati

Carter Carburetor Weekly Air Monitoring & Sampling Report - November 23, 2015 – November 29, 2015

EPA Pesticide Factsheets

Carter Carburetor Daily Weather Conditions, Dairly Work Activities, Daily Air Monitoring and Samplying Results, Air Monitoring/Samplying Results –Station 2 Linc 126, Air Monitoring/Sampling Results- Sation 3 Linc 123, Air Monitoring/Samplying Results-Stati

Carter Carburetor Weekly Air Monitoring & Sampling Report - October 5, 2015 – October 11, 2015

EPA Pesticide Factsheets

Carter Carburetor Daily Weather Conditions, Dairly Work Activities, Daily Air Monitoring and Samplying Results, Air Monitoring/Samplying Results –Station 2 Linc 126, Air Monitoring/Sampling Results- Sation 3 Linc 123, Air Monitoring/Samplying Results-Stati

Carter Carburetor Weekly Air Monitoring & Sampling Report - February 1, 2016 – February 7, 2016

EPA Pesticide Factsheets

Carter Carburetor Daily Weather Conditions, Dairly Work Activities, Daily Air Monitoring and Samplying Results, Air Monitoring/Samplying Results –Station 2 Linc 126, Air Monitoring/Sampling Results- Sation 3 Linc 123, Air Monitoring/Samplying Results-Stati

Carter Carburetor Weekly Air Monitoring & Sampling Report - September 28, 2015 – October 4, 2015

EPA Pesticide Factsheets

Carter Carburetor Daily Weather Conditions, Dairly Work Activities, Daily Air Monitoring and Samplying Results, Air Monitoring/Samplying Results –Station 2 Linc 126, Air Monitoring/Sampling Results- Sation 3 Linc 123, Air Monitoring/Samplying Results-Stati

Carter Carburetor Weekly Air Monitoring & Sampling Report - November 16, 2015 – November 22, 2015

EPA Pesticide Factsheets

Carter Carburetor Daily Weather Conditions, Dairly Work Activities, Daily Air Monitoring and Samplying Results, Air Monitoring/Samplying Results –Station 2 Linc 126, Air Monitoring/Sampling Results- Sation 3 Linc 123, Air Monitoring/Samplying Results-Stati

Carter Carburetor Weekly Air Monitoring & Sampling Report - November 9, 2015 – November 15, 2015

EPA Pesticide Factsheets

Carter Carburetor Daily Weather Conditions, Dairly Work Activities, Daily Air Monitoring and Samplying Results, Air Monitoring/Samplying Results –Station 2 Linc 126, Air Monitoring/Sampling Results- Sation 3 Linc 123, Air Monitoring/Samplying Results-Stati

Carter Carburetor Weekly Air Monitoring & Sampling Report - October 19, 2015 – October 25, 2015

EPA Pesticide Factsheets

Carter Carburetor Daily Weather Conditions, Dairly Work Activities, Daily Air Monitoring and Samplying Results, Air Monitoring/Samplying Results –Station 2 Linc 126, Air Monitoring/Sampling Results- Sation 3 Linc 123, Air Monitoring/Samplying Results-Stati

Carter Carburetor Weekly Air Monitoring & Sampling Report - November 2, 2015 – November 8, 2015

EPA Pesticide Factsheets

Carter Carburetor Daily Weather Conditions, Dairly Work Activities, Daily Air Monitoring and Samplying Results, Air Monitoring/Samplying Results –Station 2 Linc 126, Air Monitoring/Sampling Results- Sation 3 Linc 123, Air Monitoring/Samplying Results-Stati

Race/Ethnic and Nativity Disparities in Later Life Physical Performance: The Role of Health and Socioeconomic Status Over the Life Course

PubMed Central

Krueger, Patrick M.; Rohlfsen, Leah

2012-01-01

Objectives. We examine race/ethnic and nativity differences in objective measures of physical performance (i.e., peak expiratory flow, grip strength, and gait speed) in a nationally representative sample of older Whites, Blacks, and Hispanics. We also examine whether detailed measures of childhood and adult health and socioeconomic status (SES) mediate race/ethnic differences in physical performance. Method. We use data from the Health and Retirement Study, a population-based sample of older Americans born before 1947, and 3 measures of physical performance. Nested ordinary least squares models examine whether childhood and adult health and SES mediate race/ethnic differences in performance. Results. We find large and significant race/ethnic and nativity differences in lung function, grip strength, and gait speed. Adjusting for childhood and current adult health and SES reduces race/ethnic differences in physical performance but does not eliminate them entirely. Childhood health and SES as well as more proximal levels of SES are important determinants of race/ethnic disparities in later life physical performance. Discussion. The analysis highlights that a large proportion of race/ethnic and nativity disparities result from health and socioeconomic disadvantages in both early life and adulthood and thus suggests multiple intervention points at which disparities can be reduced. PMID:22391749

Women's Short-Term Employment Trajectories Following Birth: Patterns, Determinants, and Variations by Race/Ethnicity and Nativity.

PubMed

Lu, Yao; Wang, Julia Shu-Huah; Han, Wen-Jui

2017-02-01

Despite a large literature documenting the impact of childbearing on women's wages, less understanding exists of the actual employment trajectories that mothers take and the circumstances surrounding different paths. We use sequence analysis to chart the entire employment trajectory for a diverse sample of U.S. women by race/ethnicity and nativity in the first year following childbirth. Using data from the 1996-2008 panels of the Survey of Income and Program Participation and sample selection models, we find that women employed before childbirth show a high degree of labor market continuity. However, a notable share of them (24 %) took less stable paths by dropping out or scaling back work. In addition, mothers' attachment to the labor force is simultaneously supported by personal endowments and family resources yet constrained by economic hardship and job characteristics. Moreover, mothers' employment patterns differ by race/ethnicity and nativity. Nonwhite women (blacks, Hispanics, and Asians) who were employed before childbirth exhibited greater labor market continuation than white women. For immigrant women, those with a shorter length of residence were more likely to curtail employment than native-born women, but those with longer duration of residence show greater labor force attachment. We discuss the implications of these findings for income inequality and public policy.

Factor Structure Evaluation of the French Version of the Digital Natives Assessment Scale.

PubMed

Wagner, Vincent; Acier, Didier

2017-03-01

"Digital natives" concept defines young adults particularly familiar with emerging technologies such as computers, smartphones, or Internet. This notion is still controversial and so far, the primary identifying criterion was to consider their date of birth. However, literature highlighted the need to describe specific characteristics. The purpose of this research was to evaluate the factor structure of a French version of the Digital Natives Assessment Scale (DNAS). The sample of this study includes 590 participants from a 6-week massive open online course and from Web sites, electronic forums, and social networks. The DNAS was translated in French and then back-translated to English. A principal component analysis with orthogonal rotation followed by a confirmatory factorial analysis showed that a 15-item four-correlated component model provided the best fit for the data of our sample. Factor structure of this French-translated version of the DNAS was rather similar than those found in earlier studies. This study provides evidence of the DNAS robustness through cross-cultural and cross-generational validation. The French version of the DNAS appears to be appropriate as a quick and effective questionnaire to assess digital natives. More studies are needed to better define further features of this particular group.

Chemical modification of citrus pectin: Structural, physical and rheologial implications.

PubMed

Fracasso, Aline Francielle; Perussello, Camila Augusto; Carpiné, Danielle; Petkowicz, Carmen Lúcia de Oliveira; Haminiuk, Charles Windson Isidoro

2018-04-01

The present study aimed to investigate the physical, structural and rheological modifications caused by the chemical modification process of citrus pectin. Therefore, three commercial citrus pectins with different degree of esterification were chemically modified by sequential alkali and acidic hydrolytic process to produce modified citrus pectins (MCP) with special properties. The molar mass (M w ), degree of esterification (DE), monosaccharide composition, 13 C NMR spectra, homogeneity, morphology (SEM) and rheological behavior of both native and modified citrus pectins (MCP) were investigated. The chemical modification reduced the acid uronic content (up to 28.3%) and molar mass (up to 29.98%), however, showed little influence on the degree of esterification of native pectins. Modified citrus pectins presented higher amounts of neutral monosaccharides, mainly galactose, arabinose and rhamnose, typical of the Ramnogalacturonana-I (RG-I) region. Rheological tests indicated that the native and modified citrus pectins presented pseudoplastic behavior, however, the MCP samples were less viscous, compared to the native ones. Modified samples presented better dissolution in water and less strong gels, with good stability during oscillatory shearing at 25°C. This study aims to better understand the implications that chemical modifications may impose on the structure of citrus pectins. Copyright © 2017 Elsevier B.V. All rights reserved.

Native Larvivorous Fish in an Endemic Malarious Area of Southern Iran, a Biological Alternative Factor for Chemical Larvicides in Malaria Control Program

PubMed Central

SHAHI, Mehran; KAMRANI, Ehsan; SALEHI, Mehrdad; HABIBI, Reza; HANAFI-BOJD, Ahmad Ali

2015-01-01

Background: The widespread use of chemical insecticides, resistance in vectors and environmental problems, all have led to an increased interest in the use of biological agents in malaria control programs. The most important functional elements are the native fish. The aim of this study was to identify the native species of lavivorous fish in Rudan County, southern Iran, to introduce an effective species and to propose its’ implementation in the national malaria control program. Methods: This ecologically descriptive study was conducted during 2011–2012 using random sampling from different fish habitats of Rudan County. The shoals of fish were caught using fishing net. Fish samples were then identified in the Ichthyology lab, Department of Fisheries and the Environment, Hormozgan University. Results: Three species of larvivorous fish were identified as follows: Gambusia holbrooki, Aphaniusdispar dispar and Aphanius sp. The latter species has the most distribution in the study area and needs more morphological and molecular studies for identification at the species level. Conclusion: Two species of native fish, i.e., A. dispar and A. sp. with larvivorous potential live in the area. Further studies on their predatory property are recommended in order to apply this local potential against malaria vectors in the area. PMID:26744713

Valence tautomerism in synthetic models of cytochrome P450

PubMed Central

Das, Pradip Kumar; Samanta, Subhra; McQuarters, Ashley B.; Lehnert, Nicolai

2016-01-01

CytP450s have a cysteine-bound heme cofactor that, in its as-isolated resting (oxidized) form, can be conclusively described as a ferric thiolate species. Unlike the native enzyme, most synthetic thiolate-bound ferric porphyrins are unstable in air unless the axial thiolate ligand is sterically protected. Spectroscopic investigations on a series of synthetic mimics of cytP450 indicate that a thiolate-bound ferric porphyrin coexists in organic solutions at room temperature (RT) with a thiyl-radical bound ferrous porphyrin, i.e., its valence tautomer. The ferric thiolate state is favored by greater enthalpy and is air stable. The ferrous thiyl state is favored by entropy, populates at RT, and degrades in air. These ground states can be reversibly interchanged at RT by the addition or removal of water to the apolar medium. It is concluded that hydrogen bonding and local electrostatics protect the resting oxidized cytP450 active site from degradation in air by stabilizing the ferric thiolate ground state in contrast to its synthetic analogs. PMID:27302948

AirShow 1.0 CFD Software Users' Guide

NASA Technical Reports Server (NTRS)

Mohler, Stanley R., Jr.

2005-01-01

AirShow is visualization post-processing software for Computational Fluid Dynamics (CFD). Upon reading binary PLOT3D grid and solution files into AirShow, the engineer can quickly see how hundreds of complex 3-D structured blocks are arranged and numbered. Additionally, chosen grid planes can be displayed and colored according to various aerodynamic flow quantities such as Mach number and pressure. The user may interactively rotate and translate the graphical objects using the mouse. The software source code was written in cross-platform Java, C++, and OpenGL, and runs on Unix, Linux, and Windows. The graphical user interface (GUI) was written using Java Swing. Java also provides multiple synchronized threads. The Java Native Interface (JNI) provides a bridge between the Java code and the C++ code where the PLOT3D files are read, the OpenGL graphics are rendered, and numerical calculations are performed. AirShow is easy to learn and simple to use. The source code is available for free from the NASA Technology Transfer and Partnership Office.

30 CFR 90.205 - Approved sampling devices; operation; air flowrate.

Code of Federal Regulations, 2010 CFR

2010-07-01

... 30 Mineral Resources 1 2010-07-01 2010-07-01 false Approved sampling devices; operation; air... LABOR COAL MINE SAFETY AND HEALTH MANDATORY HEALTH STANDARDS-COAL MINERS WHO HAVE EVIDENCE OF THE DEVELOPMENT OF PNEUMOCONIOSIS Sampling Procedures § 90.205 Approved sampling devices; operation; air flowrate...

Analysis of EPA and DOE WIPP Air Sampling Data

EPA Pesticide Factsheets

During the April 2014 EPA visit to WIPP, EPA co-located four ambient air samplers with existing Department of Energy (DOE) ambient air samplers to independently corroborate DOE's reported air sampling results.

Air and surface contamination patterns of meticillin-resistant Staphylococcus aureus on eight acute hospital wards.

PubMed

Creamer, E; Shore, A C; Deasy, E C; Galvin, S; Dolan, A; Walley, N; McHugh, S; Fitzgerald-Hughes, D; Sullivan, D J; Cunney, R; Coleman, D C; Humphreys, H

2014-03-01

Meticillin-resistant Staphylococcus aureus (MRSA) can be recovered from hospital air and from environmental surfaces. This poses a potential risk of transmission to patients. To investigate associations between MRSA isolates recovered from air and environmental surfaces with those from patients when undertaking extensive patient and environmental sampling. This was a prospective observational study of patients and their environment in eight wards of a 700-bed tertiary care hospital during 2010 and 2011. Sampling of patients, air and surfaces was carried out on all ward bays, with more extended environmental sampling in ward high-dependency bays and at particular times of the day. The genetic relatedness of isolates was determined by DNA microarray profiling and spa typing. MRSA was recovered from 30/706 (4.3%) patients and from 19/132 (14.4%) air samples. On 9/132 (6.8%) occasions both patient and air samples yielded MRSA. In 32 high-dependency bays, MRSA was recovered from 12/161 (7.4%) patients, 8/32 (25%) air samples, and 21/644 (3.3%) environmental surface samples. On 10/132 (7.6%) occasions, MRSA was isolated from air in the absence of MRSA-positive patients. Patient demographic data combined with spa typing and DNA microarray profiling revealed four likely transmission clusters, where patient and environmental isolates were deemed to be very closely related. Air sampling yielded MRSA on frequent occasions, especially in high-dependency bays. Environmental and air sampling combined with patient demographic data, spa typing and DNA microarray profiling indicated the presence of clusters that were not otherwise apparent. Copyright © 2014 The Healthcare Infection Society. Published by Elsevier Ltd. All rights reserved.

Direct Imaging of Protein Organization in an Intact Bacterial Organelle Using High-Resolution Atomic Force Microscopy

PubMed Central

2016-01-01

The function of bioenergetic membranes is strongly influenced by the spatial arrangement of their constituent membrane proteins. Atomic force microscopy (AFM) can be used to probe protein organization at high resolution, allowing individual proteins to be identified. However, previous AFM studies of biological membranes have typically required that curved membranes are ruptured and flattened during sample preparation, with the possibility of disruption of the native protein arrangement or loss of proteins. Imaging native, curved membranes requires minimal tip–sample interaction in both lateral and vertical directions. Here, long-range tip–sample interactions are reduced by optimizing the imaging buffer. Tapping mode AFM with high-resonance-frequency small and soft cantilevers, in combination with a high-speed AFM, reduces the forces due to feedback error and enables application of an average imaging force of tens of piconewtons. Using this approach, we have imaged the membrane organization of intact vesicular bacterial photosynthetic “organelles”, chromatophores. Despite the highly curved nature of the chromatophore membrane and lack of direct support, the resolution was sufficient to identify the photosystem complexes and quantify their arrangement in the native state. Successive imaging showed the proteins remain surprisingly static, with minimal rotation or translation over several-minute time scales. High-order assemblies of RC-LH1-PufX complexes are observed, and intact ATPases are successfully imaged. The methods developed here are likely to be applicable to a broad range of protein-rich vesicles or curved membrane systems, which are an almost ubiquitous feature of native organelles. PMID:28114766

The thermal regime and species composition of fish and invertebrates in Kelly Warm Spring, Grand Teton National Park, Wyoming

USGS Publications Warehouse

Harper, David; Farag, Aida

2017-01-01

We evaluated the thermal regime and relative abundance of native and nonnative fish and invertebrates within Kelly Warm Spring and Savage Ditch, Grand Teton National Park, Wyoming. Water temperatures within the system remained relatively warm year-round with mean temperatures >20 °C near the spring source and >5 °C approximately 2 km downstream of the source. A total of 7 nonnative species were collected: Convict/Zebra Cichlid (Cichlasoma nigrofasciatum), Green Swordtail (Xiphophorus hellerii), Tadpole Madtom (Noturus gyrinus), Guppy (Poecilia reticulata), Goldfish (Carassius auratus), red-rimmed melania snail (Melanoides tuberculata), and American bullfrog tadpoles (Lithobates catesbeianus). Nonnative fish (Zebra Cichlids and Green Swordtails), red-rimmed melania snails, and bullfrog tadpoles dominated the upper 2 km of the system. Abundance estimates of the Zebra Cichlid exceeded 12,000 fish/km immediately downstream of the spring source. Relative abundance of native species increased movingdownstream as water temperatures attenuated with distance from the thermally warmed spring source; however, nonnative species were captured 4 km downstream from the spring. Fish diseases were prevalent in both native and nonnative fish from the Kelly Warm Spring pond. Clinostomum marginatum, a trematode parasite, was found in native species samples, and the tapeworm Diphyllobothrium dendriticum was present in samples from nonnative species. Diphyllobothrium dendriticum is rare in Wyoming. Salmonella spp. were also found in some samples of nonnative species. These bacteria are associated with aquarium fish and aquaculture and are generally not found in the wild.

Establishing native warm season grasses on Eastern Kentucky strip mines

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barnes, T.G.; Larkin, J.L.; Arnett, M.B.

1998-12-31

The authors evaluated various methods of establishing native warm season grasses on two reclaimed Eastern Kentucky mines from 1994--1997. Most current reclamation practices incorporate the use of tall fescue (Festuca arundinacea) and other cool-season grasses/legumes that provide little wildlife habitats. The use of native warm season grasses will likely improve wildlife habitat on reclaimed strip mines. Objectives of this study were to compare the feasibility of establishing these grasses during fall, winter, or spring using a native rangeland seeder or hydroseeding; a fertilizer application at planting; or cold-moist stratification prior to hydroseeding. Vegetative cover, bare ground, species richness, and biomassmore » samples were collected at the end of each growing season. Native warm season grass plantings had higher plant species richness compared to cool-season reclamation mixtures. There was no difference in establishment of native warm season grasses as a result of fertilization or seeding technique. Winter native warm season grass plantings were failures and cold-moist stratification did not increase plant establishment during any season. As a result of a drought during 1997, both cool-season and warm season plantings were failures. Cool-season reclamation mixtures had significantly more vegetative cover and biomass compared to native warm season grass mixtures and the native warm season grass plantings did not meet vegetative cover requirements for bond release. Forbs and legumes that established well included pale purple coneflower (Echinacea pallida), lance-leaf coreopsis (Coreopsis lanceolata), round-headed lespedeza (Lespedeza capitata), partridge pea (Cassia fasiculata), black-eyed susan (Rudbeckia hirta), butterfly milkweed (Asclepias tuberosa), and bergamot (Monarda fistulosa). Results from two demonstration plots next to research plots indicate it is possible to establish native warm season grasses on Eastern Kentucky strip mines for wildlife habitat.« less

Outlining the Ancestry Landscape of Colombian Admixed Populations

PubMed Central

Ossa, Humberto; Aquino, Juliana; Pereira, Rui; Ibarra, Adriana; Ossa, Rafael H; Pérez, Luz Adriana; Granda, Juan David; Lattig, Maria Claudia; Groot, Helena; Fagundes de Carvalho, Elizeu; Gusmão, Leonor

2016-01-01

The ancestry of the Colombian population comprises a large number of well differentiated Native communities belonging to diverse linguistic groups. In the late fifteenth century, a process of admixture was initiated with the arrival of the Europeans, and several years later, Africans also became part of the Colombian population. Therefore, the genepool of the current Colombian population results from the admixture of Native Americans, Europeans and Africans. This admixture occurred differently in each region of the country, producing a clearly stratified population. Considering the importance of population substructure in both clinical and forensic genetics, we sought to investigate and compare patterns of genetic ancestry in Colombia by studying samples from Native and non-Native populations living in its 5 continental regions: the Andes, Caribe, Amazonia, Orinoquía, and Pacific regions. For this purpose, 46 AIM-Indels were genotyped in 761 non-related individuals from current populations. Previously published genotype data from 214 Colombian Natives from five communities were used for population comparisons. Significant differences were observed between Native and non-Native populations, among non-Native populations from different regions and among Native populations from different ethnic groups. The Pacific was the region with the highest African ancestry, Amazonia harboured the highest Native ancestry and the Andean and Orinoquían regions showed the highest proportion of European ancestry. The Andean region was further sub-divided into 6 sub-regions: North East, Central West, Central East, West, South West and South East. Among these regions, the South West region showed a significantly lower European admixture than the other regions. Hardy-Weinberg equilibrium and variance values of ancestry among individuals within populations showed a potential stratification of the Pacific population. PMID:27736937

Prevalence and description of selective mutism in immigrant and native families: a controlled study.

PubMed

Elizur, Yoel; Perednik, Ruth

2003-12-01

To assess the incidence of selective mutism (SM) in West Jerusalem's state preschools and evaluate social anxiety/phobia disposition (SAP), social competence (SC), markers of neurodevelopmental delay/disorder (NDD), mothers' psychological adjustment, and marital conflict in immigrant and native children with SM and their matched controls. Mothers of 9 immigrant and 10 native children with SM and their matched controls completed questionnaires evaluating themselves, their marriages, and their children. A response rate of 30% (19/64) was obtained. The general prevalence of SM was 0.76%, while the rate among immigrants was 2.2%. Except for mothers' adjustment, all immigrant/native group effects were significant. There were significant interactions between the SM/control and immigrant/native groups for SAP, NDD, and SC. Immigrant children with SM had higher SAP and SC scores and lower NDD scores than native children with SM. This study distinguished between homogenous (socially anxious) and comorbid children with SM. In this sample, the disorder appeared to be associated with a combination of a specific diathesis (SAP) with intrinsic (NDD) and/or environmental (family immigration) vulnerabilities. Marital discord appeared to be a general risk factor for SM.

Prevalence of High-Risk Sexual Behaviors Among Monoracial and Multiracial Groups from a National Sample: Are Multiracial Young Adults at Greater Risk?

PubMed

Landor, Antoinette M; Halpern, Carolyn Tucker

2016-02-01

The present study compared the prevalence and variation in high-risk sexual behaviors among four monoracial (i.e., White, African American, Asian, Native American) and four multiracial (i.e., White/African American, White/Asian, White/Native American, African American/Native American) young adults using Wave IV data (2008-2009) from the National Longitudinal Study of Adolescent to Adult Health (N = 9724). Findings indicated differences in the sexual behavior of monoracial and multiracial young adults, but directions of differences varied depending on the monoracial group used as the referent and gender. Among males, White/African Americans had higher risk than Whites; White/Native Americans had higher risk than Native Americans. Otherwise, multiracial groups had lower risk or did not differ from the single-race groups. Among females, White/Native Americans had higher risk than Whites; White/African Americans had higher risk than African Americans. Other comparisons showed no differences or had lower risk among multiracial groups. Variations in high-risk sexual behaviors underscore the need for health research to disaggregate multiracial groups to better understand health behaviors and outcomes in the context of experiences associated with a multiracial background, and to improve prevention strategies.

Association between perceived racism and physiological stress indices in Native Hawaiians.

PubMed

Kaholokula, Joseph Keawe'aimoku; Grandinetti, Andrew; Keller, Stefan; Nacapoy, Andrea H; Kingi, Te Kani; Mau, Marjorie K

2012-02-01

The association between racism and the physical health of native U.S. populations has yet to be examined despite their high risk for stress-related disorders and a history of discrimination toward them. We examined the correlation between perceived racism and the two physiological stress indices of cortisol level and blood pressure in 146 adult Native Hawaiians. Attributed and felt racism were assessed with a 10-item shortened version of the Oppression Questionnaire. Height, weight, blood pressure, and salivary cortisol samples (AM and PM) were collected and analyzed along with information on Hawaiian ancestry, BMI, age, sex, marital status, education level, general psychological stress, and ethnic identity. The results indicated that Native Hawaiians reporting more attributed racism had significantly (P < .05) lower average cortisol levels than those reporting less attributed racism, after adjusting for socio-demographic, biological, and psychosocial confounders. Native Hawaiians reporting more felt racism had a significantly higher systolic blood pressure than those reporting less, but this association was not significant after adjusting for the aforementioned confounders. Racism appears to be a chronic stressor that can "get under the skin" of Native Hawaiians by affecting their physical health and risk for stress-related diseases, possibly, through mechanisms of cortisol dysregulation.

American Sign Language Comprehension Test: A Tool for Sign Language Researchers.

PubMed

Hauser, Peter C; Paludneviciene, Raylene; Riddle, Wanda; Kurz, Kim B; Emmorey, Karen; Contreras, Jessica

2016-01-01

The American Sign Language Comprehension Test (ASL-CT) is a 30-item multiple-choice test that measures ASL receptive skills and is administered through a website. This article describes the development and psychometric properties of the test based on a sample of 80 college students including deaf native signers, hearing native signers, deaf non-native signers, and hearing ASL students. The results revealed that the ASL-CT has good internal reliability (α = 0.834). Discriminant validity was established by demonstrating that deaf native signers performed significantly better than deaf non-native signers and hearing native signers. Concurrent validity was established by demonstrating that test results positively correlated with another measure of ASL ability (r = .715) and that hearing ASL students' performance positively correlated with the level of ASL courses they were taking (r = .726). Researchers can use the ASL-CT to characterize an individual's ASL comprehension skills, to establish a minimal skill level as an inclusion criterion for a study, to group study participants by ASL skill (e.g., proficient vs. nonproficient), or to provide a measure of ASL skill as a dependent variable. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Wideband Arrhythmia-Insensitive-Rapid (AIR) Pulse Sequence for Cardiac T1 mapping without Image Artifacts induced by ICD

PubMed Central

Hong, KyungPyo; Jeong, Eun-Kee; Wall, T. Scott; Drakos, Stavros G.; Kim, Daniel

2015-01-01

Purpose To develop and evaluate a wideband arrhythmia-insensitive-rapid (AIR) pulse sequence for cardiac T1 mapping without image artifacts induced by implantable-cardioverter-defibrillator (ICD). Methods We developed a wideband AIR pulse sequence by incorporating a saturation pulse with wide frequency bandwidth (8.9 kHz), in order to achieve uniform T1 weighting in the heart with ICD. We tested the performance of original and “wideband” AIR cardiac T1 mapping pulse sequences in phantom and human experiments at 1.5T. Results In 5 phantoms representing native myocardium and blood and post-contrast blood/tissue T1 values, compared with the control T1 values measured with an inversion-recovery pulse sequence without ICD, T1 values measured with original AIR with ICD were considerably lower (absolute percent error >29%), whereas T1 values measured with wideband AIR with ICD were similar (absolute percent error <5%). Similarly, in 11 human subjects, compared with the control T1 values measured with original AIR without ICD, T1 measured with original AIR with ICD was significantly lower (absolute percent error >10.1%), whereas T1 measured with wideband AIR with ICD was similar (absolute percent error <2.0%). Conclusion This study demonstrates the feasibility of a wideband pulse sequence for cardiac T1 mapping without significant image artifacts induced by ICD. PMID:25975192

Microbial air quality in mass transport buses and work-related illness among bus drivers of Bangkok Mass Transit Authority.

PubMed

Luksamijarulkul, Pipat; Sundhiyodhin, Viboonsri; Luksamijarulkul, Soavalug; Kaewboonchoo, Orawan

2004-06-01

The air quality in mass transport buses, especially air-conditioned buses may affect bus drivers who work full time. Bus numbers 16, 63, 67 and 166 of the Seventh Bus Zone of Bangkok Mass Transit Authority were randomly selected to investigate for microbial air quality. Nine air-conditioned buses and 2-4 open-air buses for each number of the bus (36 air-conditioned buses and 12 open-air buses) were included. Five points of in-bus air samples in each studied bus were collected by using the Millipore A ir Tester Totally, 180 and 60 air samples collected from air-conditioned buses and open-air buses were cultured for bacterial and fungal counts. The bus drivers who drove the studied buses were interviewed towards histories of work-related illness while working. The results revealed that the mean +/- SD of bacterial counts in the studied open-air buses ranged from 358.50 +/- 146.66 CFU/m3 to 506 +/- 137.62 CFU/m3; bus number 16 had the highest level. As well as the mean +/- SD of fungal counts which ranged from 93.33 +/- 44.83 CFU/m3 to 302 +/- 294.65 CFU/m3; bus number 166 had the highest level. Whereas, the mean +/- SD of bacterial counts in the studied air-conditioned buses ranged from 115.24 +/- 136.01 CFU/m3 to 244.69 +/- 234.85 CFU/m3; bus numbers 16 and 67 had the highest level. As well as the mean +/- SD of fungal counts which rangedfrom 18.84 +/- 39.42 CFU/m3 to 96.13 +/- 234.76 CFU/m3; bus number 166 had the highest level. When 180 and 60 studied air samples were analyzed in detail, it was found that 33.33% of the air samples from open-air buses and 6.11% of air samples from air-conditioned buses had a high level of bacterial counts (> 500 CFU/m3) while 6.67% of air samples from open-air buses and 2.78% of air samples from air-conditioned buses had a high level of fungal counts (> 500 CFU/m3). Data from the history of work-related illnesses among the studied bus drivers showed that 91.67% of open-air bus drivers and 57.28% of air-conditioned bus drivers had symptoms of work-related illnesses, p = 0.0185.

Determination of the bioaccessible fraction of metals in urban aerosol using simulated lung fluids

NASA Astrophysics Data System (ADS)

Coufalík, Pavel; Mikuška, Pavel; Matoušek, Tomáš; Večeřa, Zbyněk

2016-09-01

Determination of the bioaccessible fraction of metals in atmospheric aerosol is a significant issue with respect to air pollution in the urban environment. The aim of this work was to compare of metal bioaccessibility determined according to the extraction yields of six simulated lung fluids. Aerosol samples of the PM1 fraction were collected in Brno, Czech Republic. The total contents of Cd, Ce, Cr, Cu, Fe, Mn, Ni, Pb, V, and Zn in the samples were determined and their enrichment factors were calculated. The bioaccessible proportions of elements were determined by means of extraction in Gamble's solution, Gamble's solution with dipalmitoyl phosphatidyl choline (DPPC), artificial lysosomal fluid, saline, water, and in a newly proposed solution based on DPPC, referred to as "Simulated Alveoli Fluid" (SAF). The chemical composition and surface tension of the simulated lung fluids were the main parameters influencing extraction yields. Gamble's solutions and the newly designed solution of SAF exhibited the lowest extraction efficiency, and also had the lowest surface tensions. The bioaccessibility of particulate metals should be assessed by synthetic lung fluids with a low surface tension, which simulate better the behavior and composition of native lung surfactant. The bioaccessibility of metals in aerosol assessed by means of the extraction in water or artificial lysosomal fluid can be overestimated.

Ecotoxicity in the Reconquista River, province of Buenos Aires, Argentina: a preliminary study.

PubMed

Herkovits, J; Perez-Coll, C S; Herkovits, F D

1996-02-01

The Reconquista River in Argentina is considered a "supercritical" river basin due to environmental degradation. Within its valley of 1.547 km2, there are more than 3 million inhabitants and 12,000 industries. Using early-life-stage toxicity tests with Bufo arenarum embryos (the most sensitive of three native species), we determined the water quality at six sampling stations of the river valley and expressed the results as acute and chronic toxicity units. Along most of the river, the toxicity was higher than the allowable level of whole industrial effluent toxicity recommended by U.S. EPA. In a tributary stream, Arroyo Moron, the water was about 10 times more toxic than the criteria maximum concentration (CMC) recommended by U.S. EPA for industrial effluents. Similar degradation of the water quality was found taking as a reference value an upstream sampling station. In all places where the water quality was worse than the CMC, no macroorganisms were found, and in one of these places, a large number of dead fishes was observed. Our study points out that amphibian early-life-stage toxicity tests could be appropriate for assessing water contamination and water quality, which is essential for diagnosis, protection of environmental services, monitoring, and restoration purposes.

Pacific island landbird monitoring annual report, National Park of American Samoa, Ta‘u and Tutuila units, 2011

USGS Publications Warehouse

Judge, Seth W.; Camp, Richard J.; Vaivai, Visa; Hart, Patrick J.

2013-01-01

NPSA canopy and understory composition was predominantly native, and trees formed a dense closed canopy at nearly 90% of the stations sampled. More than half of the tree heights in both units were taller than 5 m and the majority of slopes were steeper than 20 degrees. There were no clear dominant tree species in the mixed native forests. The most common tree species documented included Syzygium spp., Dysoxylum spp., Ficus spp., Hibiscus tiliaceus and Rhus taitensis (among others). There were significant differences in the distribution of bird densities between legacy and random transects. Determining differences in detection probabilities cannot be definitively assessed from a single survey. We recommend both panels be sampled in the future until bias in density and abundance can be evaluated, or if sampling may be reduced.

A new technique for preliminary estimates of TRU activity on air sample filters and radiological smears.

PubMed

Hayes, Robert

2004-10-01

In most nuclear facilities, fixed air samplers and sometimes portable air samplers are used where some probability of a release exists but is not expected, and so the added expense and effort of using a continuous air monitor is not deemed justified. When a release is suspected, naturally occurring radioactive material buildup on the filter typically prevents any quantitative measurements within the first day or so. Likewise, outdoor air measurements suffer from the same limitations (such as those taken during the Los Alamos fires) and so any rapid quantifiable measurements of fixed air sampler/portable air sampler filters which are technically defendable (even though conservative) are of use. The technique presented here is only intended for use in routine health physics survey applications and does not presently appear to be appropriate for sub pico Curie activity determinations. This study evaluates the utility of using a portable continuous air monitor as an alpha spectrometer to make transuranic activity determinations of samples using both the built in algorithm for air monitoring and a simple region of interest analysis. All samples evaluated were from air sample filters taken using a portable air sampler. Samples were taken over many months to quantify effects from natural variation in radon progeny activity distributions.

Spatial patterns of air pollutants and social groups: a distributive environmental justice study in the phoenix metropolitan region of USA

NASA Astrophysics Data System (ADS)

Pope, Ronald; Wu, Jianguo; Boone, Christopher

2016-11-01

Quantifying spatial distribution patterns of air pollutants is imperative to understand environmental justice issues. Here we present a landscape-based hierarchical approach in which air pollution variables are regressed against population demographics on multiple spatiotemporal scales. Using this approach, we investigated the potential problem of distributive environmental justice in the Phoenix metropolitan region, focusing on ambient ozone and particulate matter. Pollution surfaces (maps) are evaluated against the demographics of class, age, race (African American, Native American), and ethnicity (Hispanic). A hierarchical multiple regression method is used to detect distributive environmental justice relationships. Our results show that significant relationships exist between the dependent and independent variables, signifying possible environmental inequity. Although changing spatiotemporal scales only altered the overall direction of these relationships in a few instances, it did cause the relationship to become nonsignificant in many cases. Several consistent patterns emerged: people aged 17 and under were significant predictors for ambient ozone and particulate matter, but people 65 and older were only predictors for ambient particulate matter. African Americans were strong predictors for ambient particulate matter, while Native Americans were strong predictors for ambient ozone. Hispanics had a strong negative correlation with ambient ozone, but a less consistent positive relationship with ambient particulate matter. Given the legacy conditions endured by minority racial and ethnic groups, and the relative lack of mobility of all the groups, our findings suggest the existence of environmental inequities in the Phoenix metropolitan region. The methodology developed in this study is generalizable with other pollutants to provide a multi-scaled perspective of environmental justice issues.

Growth trends among male Bods of Ladakh--a high altitude population.

PubMed

Malik, S L; Singh, I P

1978-02-01

A random sample of 274 native male Bods of Ladakh ranging in age from 11 to 19 years, living in Leh (Ladakh) at mean altitude of 3,514 metres, was studied. The pattern of growth of this sample was compared with the sea level Indians. The results indicate that: (1) The so called adolescent spurt is not well defined among Bod highlanders. (2) Bods grow faster than plain dwelling Indians and are taller and heavier at the age of 19 years. (3) The highlanders exhibit greater chest circumference than the lowland norms. This finding, similar to those among Andean natives, supports high altitude hypoxia's role in human growth and morphology.

Optimizing physical energy functions for protein folding.

PubMed

Fujitsuka, Yoshimi; Takada, Shoji; Luthey-Schulten, Zaida A; Wolynes, Peter G

2004-01-01

We optimize a physical energy function for proteins with the use of the available structural database and perform three benchmark tests of the performance: (1) recognition of native structures in the background of predefined decoy sets of Levitt, (2) de novo structure prediction using fragment assembly sampling, and (3) molecular dynamics simulations. The energy parameter optimization is based on the energy landscape theory and uses a Monte Carlo search to find a set of parameters that seeks the largest ratio deltaE(s)/DeltaE for all proteins in a training set simultaneously. Here, deltaE(s) is the stability gap between the native and the average in the denatured states and DeltaE is the energy fluctuation among these states. Some of the energy parameters optimized are found to show significant correlation with experimentally observed quantities: (1) In the recognition test, the optimized function assigns the lowest energy to either the native or a near-native structure among many decoy structures for all the proteins studied. (2) Structure prediction with the fragment assembly sampling gives structure models with root mean square deviation less than 6 A in one of the top five cluster centers for five of six proteins studied. (3) Structure prediction using molecular dynamics simulation gives poorer performance, implying the importance of having a more precise description of local structures. The physical energy function solely inferred from a structural database neither utilizes sequence information from the family of the target nor the outcome of the secondary structure prediction but can produce the correct native fold for many small proteins. Copyright 2003 Wiley-Liss, Inc.

Diversity, Loss, and Gain of Malaria Parasites in a Globally Invasive Bird

PubMed Central

Marzal, Alfonso; Ricklefs, Robert E.; Valkiūnas, Gediminas; Albayrak, Tamer; Arriero, Elena; Bonneaud, Camille; Czirják, Gábor A.; Ewen, John; Hellgren, Olof; Hořáková, Dita; Iezhova, Tatjana A.; Jensen, Henrik; Križanauskienė, Asta; Lima, Marcos R.; de Lope, Florentino; Magnussen, Eyðfinn; Martin, Lynn B.; Møller, Anders P.; Palinauskas, Vaidas; Pap, Péter L.; Pérez-Tris, Javier; Sehgal, Ravinder N. M.; Soler, Manuel; Szöllősi, Eszter; Westerdahl, Helena; Zetindjiev, Pavel; Bensch, Staffan

2011-01-01

Invasive species can displace natives, and thus identifying the traits that make aliens successful is crucial for predicting and preventing biodiversity loss. Pathogens may play an important role in the invasive process, facilitating colonization of their hosts in new continents and islands. According to the Novel Weapon Hypothesis, colonizers may out-compete local native species by bringing with them novel pathogens to which native species are not adapted. In contrast, the Enemy Release Hypothesis suggests that flourishing colonizers are successful because they have left their pathogens behind. To assess the role of avian malaria and related haemosporidian parasites in the global spread of a common invasive bird, we examined the prevalence and genetic diversity of haemosporidian parasites (order Haemosporida, genera Plasmodium and Haemoproteus) infecting house sparrows (Passer domesticus). We sampled house sparrows (N = 1820) from 58 locations on 6 continents. All the samples were tested using PCR-based methods; blood films from the PCR-positive birds were examined microscopically to identify parasite species. The results show that haemosporidian parasites in the house sparrows' native range are replaced by species from local host-generalist parasite fauna in the alien environments of North and South America. Furthermore, sparrows in colonized regions displayed a lower diversity and prevalence of parasite infections. Because the house sparrow lost its native parasites when colonizing the American continents, the release from these natural enemies may have facilitated its invasion in the last two centuries. Our findings therefore reject the Novel Weapon Hypothesis and are concordant with the Enemy Release Hypothesis. PMID:21779353

Diversity, loss, and gain of malaria parasites in a globally invasive bird.

PubMed

Marzal, Alfonso; Ricklefs, Robert E; Valkiūnas, Gediminas; Albayrak, Tamer; Arriero, Elena; Bonneaud, Camille; Czirják, Gábor A; Ewen, John; Hellgren, Olof; Hořáková, Dita; Iezhova, Tatjana A; Jensen, Henrik; Križanauskienė, Asta; Lima, Marcos R; de Lope, Florentino; Magnussen, Eyðfinn; Martin, Lynn B; Møller, Anders P; Palinauskas, Vaidas; Pap, Péter L; Pérez-Tris, Javier; Sehgal, Ravinder N M; Soler, Manuel; Szöllosi, Eszter; Westerdahl, Helena; Zetindjiev, Pavel; Bensch, Staffan

2011-01-01

Invasive species can displace natives, and thus identifying the traits that make aliens successful is crucial for predicting and preventing biodiversity loss. Pathogens may play an important role in the invasive process, facilitating colonization of their hosts in new continents and islands. According to the Novel Weapon Hypothesis, colonizers may out-compete local native species by bringing with them novel pathogens to which native species are not adapted. In contrast, the Enemy Release Hypothesis suggests that flourishing colonizers are successful because they have left their pathogens behind. To assess the role of avian malaria and related haemosporidian parasites in the global spread of a common invasive bird, we examined the prevalence and genetic diversity of haemosporidian parasites (order Haemosporida, genera Plasmodium and Haemoproteus) infecting house sparrows (Passer domesticus). We sampled house sparrows (N = 1820) from 58 locations on 6 continents. All the samples were tested using PCR-based methods; blood films from the PCR-positive birds were examined microscopically to identify parasite species. The results show that haemosporidian parasites in the house sparrows' native range are replaced by species from local host-generalist parasite fauna in the alien environments of North and South America. Furthermore, sparrows in colonized regions displayed a lower diversity and prevalence of parasite infections. Because the house sparrow lost its native parasites when colonizing the American continents, the release from these natural enemies may have facilitated its invasion in the last two centuries. Our findings therefore reject the Novel Weapon Hypothesis and are concordant with the Enemy Release Hypothesis.

Decellularization of Human Internal Mammary Artery: Biomechanical Properties and Histopathological Evaluation.

PubMed

Kajbafzadeh, Abdol-Mohammad; Khorramirouz, Reza; Kameli, Seyede Maryam; Hashemi, Javad; Bagheri, Amin

2017-01-01

This study undertook to create small-diameter vascular grafts and assess their structure and mechanical properties to withstand arterial implantation. Twenty samples of intact human internal mammary arteries (IMAs) were collected and decellularized using detergent-based methods. To evaluate residual cellular and extracellular matrix (ECM) components, histological analysis was performed. Moreover, collagen typing and ECM structure were analyzed by Picrosirius red and Movat's pentachrome staining. Scanning electron microscopy was also applied to assess microarchitecture of both endothelial and adventitial surfaces of native and decellularized arterial samples. Furthermore, mechanical tests were performed to evaluate the rigidity and suture strength of the arteries. Human IMAs were completely decellularized in all three segments (proximal, middle, and distal). ECM proteins such as collagen and elastic fibers were efficiently preserved and no structural distortion in intima, media, and adventitial surfaces was observed. The parameters of the mechanical tests revealed no significant differences in the mechanical properties of decellularized arteries in comparison to native arteries with considerable strength, suture retention, and stress relaxation (Young's modulus [MPa] = 0.22 ± 0.023 [native] and 0.22 ± 0.015 [acellular]; and suture strength 0.56 ± 0.19 [native] vs. 0.56 ± 0.12 [acellular], respectively). Decellularized IMA represents a potential arterial scaffold as an alternative to autologous grafts for future arterial bypass surgeries. By this technique, microarchitecture and mechanical integrity of decellularized arteries were considerably similar to native arteries. The goal of this study was to introduce an efficient method for complete decellularization of human IMA and evaluate the ECM and biomechanical properties.

[Legionella spp. contamination in indoor air: preliminary results of an Italian multicenter study].

PubMed

Montagna, Maria Teresa; De Giglio, Osvalda; Napoli, Christian; Cannova, Lucia; Cristina, Maria Luisa; Deriu, Maria Grazia; Delia, Santi Antonino; Giuliano, Ada; Guida, Marco; Laganà, Pasqualina; Liguori, Giorgio; Mura, Ida; Pennino, Francesca; Rossini, Angelo; Tardivo, Stefano; Torre, Ida; Torregrossa, Maria Valeria; Villafrate, Maria Rosaria; Albertini, Roberto; Pasquarella, Cesira

2014-01-01

To propose a standardized protocol for the evaluation of Legionella contamination in air. A bathroom having a Legionella contamination in water >1,000 cfu/l was selected in 10 different healthcare facilities. Air contamination was assessed by active (Surface Air System, SAS) and passive (Index of Microbial Air, IMA) sampling for 8 hours, about 1 m away from the floor and 50 cm from the tap water. Two hundred liters of air were sampled by SAS every 12 min, after flushing water for 2 min. The IMA value was calculated as the mean value of colony forming units/16 plates exposed during sampling (2 plates/hour). Water contamination was evaluated at T0, after 4 and 8 hours, according to the standard methods. Air contamination by Legionella was found in three healthcare facilities (one with active and two with passive sampling), showing a concomitant tap water contamination (median=40,000; range 1,100-43,000 cfu/l). The remaining seven hospitals isolated Legionella spp. exclusively from water samples (median=8,000; range 1,200-70,000 cfu/l). Our data suggest that environmental Legionella contamination cannot be assessed only through the air sampling, even in the presence of an important water contamination.

Quantitative evaluation of refolding conditions for a disulfide-bond-containing protein using a concise 18O-labeling technique

PubMed Central

Uchimura, Hiromasa; Kim, Yusam; Mizuguchi, Takaaki; Kiso, Yoshiaki; Saito, Kazuki

2011-01-01

A concise method was developed for quantifying native disulfide-bond formation in proteins using isotopically labeled internal standards, which were easily prepared with proteolytic 18O-labeling. As the method has much higher throughput to estimate the amounts of fragments possessing native disulfide arrangements by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS) than the conventional high performance liquid chromatography (HPLC) analyses, it allows many different experimental conditions to be assessed in a short time. The method was applied to refolding experiments of a recombinant neuregulin 1-β1 EGF-like motif (NRG1-β1), and the optimum conditions for preparing native NRG1-β1 were obtained by quantitative comparisons. Protein disulfide isomerase (PDI) was most effective at the reduced/oxidized glutathione ratio of 2:1 for refolding the denatured sample NRG1-β1 with the native disulfide bonds. PMID:21500299

Immigrants' Pathways to Outpatient Mental Health: Are there Differences with the Native Population?

PubMed

Gramaglia, Carla; Gambaro, Eleonora; Rossi, Annalisa; Toso, Alessandra; Feggi, Alessandro; Cattaneo, Carlo Ignazio; Castignoli, Giorgio; Mainini, Piera; Tarricone, Ilaria; Torre, Eugenio; Zeppegno, Patrizia

2016-08-01

A poor use of mental health services has been described in immigrants. We compared the sociodemographic, clinical and treatment features of immigrants and natives attending a Community Mental Health Centre (CMHC). 191 immigrants and 191 randomly selected natives applying to the Borgomanero CMHC between 1 January 2003 and 31 August 2013 were compared. Our sample consisted mainly of the so-called "economic" immigrant. Adjustment disorders and reaction to stress were the most frequent diagnoses; in most cases symptoms onset occurred after migration. Although treatment features overlapped in the two groups (duration, number of contacts), immigrants showed a higher frequency of treatment dropout. While it is necessary to improve access to mental health services for immigrants, for the "economic" immigrant it may be more important to focus on establishing a therapeutic relationship that can be experienced as reliable and trustworthy. The finding of similar pathways to access the CMHC in natives and immigrants is encouraging.

The integration paradox: level of education and immigrants' attitudes towards natives and the host society.

PubMed

de Vroome, Thomas; Martinovic, Borja; Verkuyten, Maykel

2014-04-01

The so-called integration paradox refers to the phenomenon of the economically more integrated and highly educated immigrants turning away from the host society, instead of becoming more oriented toward it. The present study examined this paradox in the Netherlands among a large sample (N = 3,981) of immigrants, including 2 generations and 4 ethnic groups. The assumed negative relationship between level of education and attitudes toward the host society and the native population was expected to be mediated by two indicators of perceived acceptance by the native majority: discrimination and subgroup respect. Results show that higher educated immigrants perceive more discrimination and less respect for minorities, and these perceptions, in turn, relate to less positive evaluations of the native majority and the host society. This pattern of associations is quite similar for the 2 generations and for the 4 migrant groups.

THE EFFECT OF A CULTURALLY TAILORED SUBSTANCE ABUSE PREVENTION INTERVENTION WITH PLAINS INDIAN ADOLESCENTS.

PubMed

Patchell, Beverly A; Robbins, Leslie K; Lowe, John A; Hoke, Mary M

2015-01-01

To examine the effects of incorporating tribal specific cultural beliefs into a tailored substance abuse prevention intervention for at risk rural Oklahoma Native American Indian (NAI) Plains adolescents. The 10 hour Native American Talking Circle Intervention, a school-based, group substance abuse prevention program, was implemented over a 8.5 week period and evaluated using a one group, pretest-posttest design. Measurements were from the Native Self-Reliance Questionnaire and the Substance Problems Scale from Global Appraisal of Individual Needs-Quick (GAIN-Q). One-tailed, paired sample t-tests demonstrated significant increase in self-reliance, from 86.227 to 92.204 (t (43) = -2.580, p = .007) and a decrease in substance abuse/use, from 2.265 to 1.265 (t (33) = 1.844, p = .007). The Native Talking Circle Intervention based on tribal-specific values and beliefs was shown to be effective with substance abuse/use at-risk NAI Plains tribal adolescents.

Sorbent-based sampling methods for volatile and semi-volatile organic compounds in air Part 1: Sorbent-based air monitoring options.

PubMed

Woolfenden, Elizabeth

2010-04-16

Sorbent tubes/traps are widely used in combination with gas chromatographic (GC) analytical methods to monitor the vapour-phase fraction of organic compounds in air. Target compounds range in volatility from acetylene and freons to phthalates and PCBs and include apolar, polar and reactive species. Airborne vapour concentrations will vary depending on the nature of the location, nearby pollution sources, weather conditions, etc. Levels can range from low percent concentrations in stack and vent emissions to low part per trillion (ppt) levels in ultra-clean outdoor locations. Hundreds, even thousands of different compounds may be present in any given atmosphere. GC is commonly used in combination with mass spectrometry (MS) detection especially for environmental monitoring or for screening uncharacterised workplace atmospheres. Given the complexity and variability of organic vapours in air, no one sampling approach suits every monitoring scenario. A variety of different sampling strategies and sorbent media have been developed to address specific applications. Key sorbent-based examples include: active (pumped) sampling onto tubes packed with one or more sorbents held at ambient temperature; diffusive (passive) sampling onto sorbent tubes/cartridges; on-line sampling of air/gas streams into cooled sorbent traps; and transfer of air samples from containers (canisters, Tedlar) bags, etc.) into cooled sorbent focusing traps. Whichever sampling approach is selected, subsequent analysis almost always involves either solvent extraction or thermal desorption (TD) prior to GC(/MS) analysis. The overall performance of the air monitoring method will depend heavily on appropriate selection of key sampling and analytical parameters. This comprehensive review of air monitoring using sorbent tubes/traps is divided into 2 parts. (1) Sorbent-based air sampling option. (2) Sorbent selection and other aspects of optimizing sorbent-based air monitoring methods. The paper presents current state-of-the-art and recent developments in relevant areas such as sorbent research, sampler design, enhanced approaches to analytical quality assurance and on-tube derivatisation. Copyright 2009 Elsevier B.V. All rights reserved.

Molecular detection of airborne Coccidioides in Tucson, Arizona

USGS Publications Warehouse

Chow, Nancy A.; Griffin, Dale W.; Barker, Bridget M.; Loparev, Vladimir N.; Litvintseva, Anastasia P.

2016-01-01

Environmental surveillance of the soil-dwelling fungus Coccidioides is essential for the prevention of Valley fever, a disease primarily caused by inhalation of the arthroconidia. Methods for collecting and detectingCoccidioides in soil samples are currently in use by several laboratories; however, a method utilizing current air sampling technologies has not been formally demonstrated for the capture of airborne arthroconidia. In this study, we collected air/dust samples at two sites (Site A and Site B) in the endemic region of Tucson, Arizona, and tested a variety of air samplers and membrane matrices. We then employed a single-tube nested qPCR assay for molecular detection. At both sites, numerous soil samples (n = 10 at Site A and n = 24 at Site B) were collected and Coccidioides was detected in two samples (20%) at Site A and in eight samples (33%) at Site B. Of the 25 air/dust samples collected at both sites using five different air sampling methods, we detected Coccidioides in three samples from site B. All three samples were collected using a high-volume sampler with glass-fiber filters. In this report, we describe these methods and propose the use of these air sampling and molecular detection strategies for environmental surveillance of Coccidioides.

United States Army Aeromedical Support to African Fliers, 1941 - 1949: The Tuskegee Flight Suregons

DTIC Science & Technology

2007-04-01

infectious diseases: upper respiratory infections (URIs), measles, mumps, chicken pox and other contagious diseases, malaria and venereal diseases...as campaigns in Cuba, the Philippines, Mexico and Nicaragua. However, neither the Air Corps nor its Medical Corps officers had much experience in...with live chickens , rabbits, steers and beef cattle from natives. One physician commented that the locals would rather trade for coffee, tea or

Economic Analysis of Energy-Efficiency Measures: Tribal Case Studies with the Yurok Tribe, the Confederated Salish and Kootenai Tribes of the Flathead Reservation, and the Pascua Yaqui Tribe

ERIC Educational Resources Information Center

Acker, Thomas L.; Auberle, William M.; Eastwood, John D.; Laroche, David R.; Slack, Robert P.; Smith, Dean H.; Ormond, Amanda S.

2005-01-01

The results of three energy-efficiency case studies conducted with three different Native American tribes in the western United States is presented. The case studies demonstrate that energy-efficiency is economically feasible and has the potential to reduce air pollution, and can potentially help tribes meet other important tribal objectives.

Assessment of Air Quality in the Shuttle and International Space Station (ISS) Based on Samples Returned by STS-104 at the Conclusion of 7A

NASA Technical Reports Server (NTRS)

James, John T.

2001-01-01

The toxicological assessment of air samples returned at the end of the STS-l04 (7 A) flight to the ISS is reported. ISS air samples were taken in June and July 2001 from the Service Module, FGB, and U.S. Laboratory using grab sample canisters (GSCs) and/or formaldehyde badges. Preflight and end-of-mission samples were obtained from Atlantis using GSCs. Solid sorbent air sampler (SSAS) samples were obtained from the ISS in April, June, and July. Analytical methods have not changed from earlier reports, and all quality control measures were met.

The problems inherent in teaching technical writing and report writing to native Americans

NASA Technical Reports Server (NTRS)

Zukowski/faust, J.

1981-01-01

Teaching technical writing to Native Americans contending with a second language and culture is addressed. Learning difficulties arising from differences between native and acquired language and cultural systems are examined. Compartmentalized teaching, which presents the ideals of technical writing in minimal units, and skills development are considered. Rhetorical problems treated include logic of arrangement, selection of support and scope of detail, and time and space. Specific problems selected include the concept of promptness, the contextualization of purpose, interpersonal relationships, wordiness, mixture of registers, and the problem of abstracting. Four inductive procedures for students having writing and perception problems are included. Four sample exercises and a bibliography of 13 references are also included.

Passive Sampling for Indoor and Outdoor Exposures to Chlorpyrifos, Azinphos-Methyl, and Oxygen Analogs in a Rural Agricultural Community.

PubMed

Gibbs, Jenna L; Yost, Michael G; Negrete, Maria; Fenske, Richard A

2017-03-01

Recent studies have highlighted the increased potency of oxygen analogs of organophosphorus pesticides. These pesticides and oxygen analogs have previously been identified in the atmosphere following spray applications in the states of California and Washington. We used two passive sampling methods to measure levels of the ollowing organophosphorus pesticides: chlorpyrifos, azinphos-methyl, and their oxygen analogs at 14 farmworker and 9 non-farmworker households in an agricultural region of central Washington State in 2011. The passive methods included polyurethane foam passive air samplers deployed outdoors and indoors and polypropylene deposition plates deployed indoors. We collected cumulative monthly samples during the pesticide application seasons and during the winter season as a control. Monthly outdoor air concentrations ranged from 9.2 to 199 ng/m 3 for chlorpyrifos, 0.03 to 20 ng/m 3 for chlorpyrifos-oxon, < LOD (limit of detection) to 7.3 ng/m 3 for azinphos-methyl, and < LOD to 0.8 ng/m 3 for azinphos-methyl-oxon. Samples from proximal households (≤ 250 m) had significantly higher outdoor air concentrations of chlorpyrifos, chlorpyrifos-oxon, and azinphos-methyl than did samples from nonproximal households ( p ≤ 0.02). Overall, indoor air concentrations were lower than outdoors. For example, all outdoor air samples for chlorpyrifos and 97% of samples for azinphos-methyl were > LOD. Indoors, only 78% of air samples for chlorpyrifos and 35% of samples for azinphos-methyl were > LOD. Samples from farmworker households had higher indoor air concentrations of both pesticides than did samples from non-farmworker households. Mean indoor and outdoor air concentration ratios for chlorpyrifos and azinphos-methyl were 0.17 and 0.44, respectively. We identified higher levels in air and on surfaces at both proximal and farmworker households. Our findings further confirm the presence of pesticides and their oxygen analogs in air and highlight their potential for infiltration of indoor living environments. Citation: Gibbs JL, Yost MG, Negrete M, Fenske RA. 2017. Passive sampling for indoor and outdoor exposures to chlorpyrifos, azinphos-methyl, and oxygen analogs in a rural agricultural community. Environ Health Perspect 125:333-341; http://dx.doi.org/10.1289/EHP425.

Breathing zone air sampler

DOEpatents

Tobin, John

1989-01-01

A sampling apparatus is provided which comprises a sampler for sampling air in the breathing zone of a wearer of the apparatus and a support for the sampler preferably in the form of a pair of eyeglasses. The sampler comprises a sampling assembly supported on the frame of the eyeglasses and including a pair of sample transport tubes which are suspended, in use, centrally of the frame so as to be disposed on opposite sides of the nose of the wearer and which each include an inlet therein that, in use, is disposed adjacent to a respective nostril of the nose of the wearer. A filter holder connected to sample transport tubes supports a removable filter for filtering out particulate material in the air sampled by the apparatus. The sample apparatus is connected to a pump for drawing air into the apparatus through the tube inlets so that the air passes through the filter.

Severe plant invasions can increase mycorrhizal fungal abundance and diversity.

PubMed

Lekberg, Ylva; Gibbons, Sean M; Rosendahl, Søren; Ramsey, Philip W

2013-07-01

Invasions by non-native plants can alter ecosystem functions and reduce native plant diversity, but relatively little is known about their effect on belowground microbial communities. We show that invasions by knapweed (Centaurea stoebe) and leafy spurge (Euphorbia esula, hereafter spurge)--but not cheatgrass (Bromus tectorum)--support a higher abundance and diversity of symbiotic arbuscular mycorrhizal fungi (AMF) than multi-species native plant communities. The higher AMF richness associated with knapweed and spurge is unlikely due to a co-invasion by AMF, because a separate sampling showed that individual native forbs hosted a similar AMF abundance and richness as exotic forbs. Native grasses associated with fewer AMF taxa, which could explain the reduced AMF richness in native, grass-dominated communities. The three invasive plant species harbored distinct AMF communities, and analyses of co-occurring native and invasive plants indicate that differences were partly driven by the invasive plants and were not the result of pre-invasion conditions. Our results suggest that invasions by mycotrophic plants that replace poorer hosts can increase AMF abundance and richness. The high AMF richness in monodominant plant invasions also indicates that the proposed positive relationship between above and belowground diversity is not always strong. Finally, the disparate responses among exotic plants and consistent results between grasses and forbs suggest that AMF respond more to plant functional group than plant provenance.

Severe plant invasions can increase mycorrhizal fungal abundance and diversity

PubMed Central

Lekberg, Ylva; Gibbons, Sean M; Rosendahl, Søren; Ramsey, Philip W

2013-01-01

Invasions by non-native plants can alter ecosystem functions and reduce native plant diversity, but relatively little is known about their effect on belowground microbial communities. We show that invasions by knapweed (Centaurea stoebe) and leafy spurge (Euphorbia esula, hereafter spurge)—but not cheatgrass (Bromus tectorum)—support a higher abundance and diversity of symbiotic arbuscular mycorrhizal fungi (AMF) than multi-species native plant communities. The higher AMF richness associated with knapweed and spurge is unlikely due to a co-invasion by AMF, because a separate sampling showed that individual native forbs hosted a similar AMF abundance and richness as exotic forbs. Native grasses associated with fewer AMF taxa, which could explain the reduced AMF richness in native, grass-dominated communities. The three invasive plant species harbored distinct AMF communities, and analyses of co-occurring native and invasive plants indicate that differences were partly driven by the invasive plants and were not the result of pre-invasion conditions. Our results suggest that invasions by mycotrophic plants that replace poorer hosts can increase AMF abundance and richness. The high AMF richness in monodominant plant invasions also indicates that the proposed positive relationship between above and belowground diversity is not always strong. Finally, the disparate responses among exotic plants and consistent results between grasses and forbs suggest that AMF respond more to plant functional group than plant provenance. PMID:23486251

Diet and conservation implications of an invasive chameleon, Chamaeleo jacksonii (Squamata: Chamaeleonidae) in Hawaii

USGS Publications Warehouse

Kraus, Fred; Medeiros, Arthur; Preston, David; Jarnevich, Catherine S.; Rodda, Gordon H.

2012-01-01

We summarize information on current distribution of the invasive lizard Chamaeleo jacksonii and predict its potential distribution in the Hawaiian Islands. Potential distribution maps are based on climate models developed from known localities in its native range and its Hawaiian range. We also present results of analysis of stomach contents of a sample of 34 chameleons collected from native, predominantly dryland, forest on Maui. These data are the first summarizing prey range of this non-native species in an invaded native-forest setting. Potential distribution models predict that the species can occur throughout most of Hawaii from sea level to >2,100 m elevation. Important features of this data set are that approximately one-third of the diet of these lizards is native insects, and the lizards are consuming large numbers of arthropods each day. Prey sizes span virtually the entire gamut of native Hawaiian arthropod diversity, thereby placing a large number of native species at risk of predation. Our dietary results contrast with expectations for most iguanian lizards and support suggestions that chameleons comprise a third distinct foraging-mode category among saurians. The combination of expanding distribution, large potential range size, broad diet, high predation rates, and high densities of these chameleons imply that they may well become a serious threat to some of the Hawaiian fauna.

Helminth species richness of introduced and native grey mullets (Teleostei: Mugilidae).

PubMed

Sarabeev, Volodimir

2015-08-01

Quantitative complex analyses of parasite communities of invaders across different native and introduced populations are largely lacking. The present study provides a comparative analysis of species richness of helminth parasites in native and invasive populations of grey mullets. The local species richness differed between regions and host species, but did not differ when compared with invasive and native hosts. The size of parasite assemblages of endohelminths was higher in the Mediterranean and Azov-Black Seas, while monogeneans were the most diverse in the Sea of Japan. The helminth diversity was apparently higher in the introduced population of Liza haematocheilus than that in their native habitat, but this trend could not be confirmed when the size of geographic range and sampling efforts were controlled for. The parasite species richness at the infracommunity level of the invasive host population is significantly lower compared with that of the native host populations that lends support to the enemy release hypothesis. A distribution pattern of the infracommunity richness of acquired parasites by the invasive host can be characterized as aggregated and it is random in native host populations. Heterogeneity in the host susceptibility and vulnerability to acquired helminth species was assumed to be a reason of the aggregation of species numbers in the population of the invasive host. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Novel technique for airless connection of artificial heart to vascular conduits.

PubMed

Karimov, Jamshid H; Gao, Shengqiang; Dessoffy, Raymond; Sunagawa, Gengo; Sinkewich, Martin; Grady, Patrick; Sale, Shiva; Moazami, Nader; Fukamachi, Kiyotaka

2017-12-01

Successful implantation of a total artificial heart relies on multiple standardized procedures, primarily the resection of the native heart, and exacting preparation of the atrial and vascular conduits for pump implant and activation. Achieving secure pump connections to inflow/outflow conduits is critical to a successful outcome. During the connection process, however, air may be introduced into the circulation, traveling to the brain and multiple organs. Such air emboli block blood flow to these areas and are detrimental to long-term survival. A correctly managed pump-to-conduit connection prevents air from collecting in the pump and conduits. To further optimize pump-connection techniques, we have developed a novel connecting sleeve that enables airless connection of the Cleveland Clinic continuous-flow total artificial heart (CFTAH) to the conduits. In this brief report, we describe the connecting sleeve design and our initial results from two acute in vivo implantations using a scaled-down version of the CFTAH.

A 0.5 Tesla Transverse-Field Alternating Magnetic Field Demagnetizer

NASA Astrophysics Data System (ADS)

Schillinger, W. E.; Morris, E. R.; Finn, D. R.; Coe, R. S.

2015-12-01

We have built an alternating field demagnetizer that can routinely achieve a maximum field of 0.5 Tesla. It uses an amorphous magnetic core with an air-cooled coil. We have started with a 0.5 T design, which satisfies most of our immediate needs, but we can certainly achieve higher fields. In our design, the magnetic field is transverse to the bore and uniform to 1% over a standard (25 mm) paleomagnetic sample. It is powered by a 1 kW power amplifier and is compatible with our existing sample handler for automated demagnetization and measurement (Morris et al., 2009). It's much higher peak field has enabled us to completely demagnetize many of the samples that previously we could not with commercial equipment. This capability is especially needed for high-coercivity sedimentary and igneous rocks that contain magnetic minerals that alter during thermal demagnetization. It will also enable detailed automated demagnetization of high coercivity phases in extraterrestrial samples, such as native iron, iron-alloy and sulfide minerals that are common in lunar rocks and meteorites. Furthermore, it has opened the door for us to use the rock-magnetic technique of component analysis, using coercivity distributions derived from very detailed AF demagnetization of NRM and remanence produced in the laboratory to characterize the magnetic mineralogy of sedimentary rocks. In addition to the many benefits this instrument has brought to our own research, a much broader potential impact is to replace the transverse coils in automated AF demagnetization systems, which typically are limited to peak fields around 0.1 T.

Pesticide impact study in the peri-urban horticultural area of Gran La Plata, Argentina.

PubMed

Mac Loughlin, Tomás M; Peluso, Leticia; Marino, Damián J G

2017-11-15

Vegetable production systems are characterized by intense pesticide use, yet the effects on the surrounding environment are largely unknown and need to be studied. Given this knowledge gap, the objective of this work is to determine the impact of horticulture on a representative watercourse by conducting an integrated study of the occurrence and concentration of pesticides in bottom sediments and their relation to lethal and sublethal effects on benthic fauna. Two sampling campaigns were conducted during seasons of low and high pesticide application in five sites along the Carnaval creek, located in the peri-urban area of La Plata City (Buenos Aires, Argentina). The samples were tested for 36 pesticide compounds by GC-MS and LC-MS, and whole-sediment laboratory toxicity tests were performed using the native amphipod Hyalella curvispina. The results showed a general but variable distribution in the concentrations detected along the stream. For each sampling campaign (first/second), the total pesticide loads, measured as the sum of herbicides, insecticides and fungicides, were 1080/2329, 3715/88, and 367/5ngg -1 dw, respectively. Lethal and sublethal effects were observed in both sampling campaigns. In order to correlate both sets of results, data were assessed by multivariate analysis, including principal component analysis. The observed toxicity was considered to be mainly due to insecticides; thus, horticultural practices have an impact on nearby watercourses and can potentially endanger the benthic fauna. This is the first study in Argentina to assess the impact of pesticides on aquatic environments close to horticultural production areas. Copyright © 2017 Elsevier B.V. All rights reserved.

Phylogenetic information in polymorphic L1 and Alu insertions from East Asians and Native American populations.

PubMed

Mateus Pereira, L H; Socorro, A; Fernandez, I; Masleh, M; Vidal, D; Bianchi, N O; Bonatto, S L; Salzano, F M; Herrera, R J

2005-09-01

This study attempts to ascertain genetic affinities between Native American and East Asian populations by analyzing four polymorphic Alu insertions (PAIs) and three L1 polymorphic loci. These two genetic systems demonstrated strong congruence when levels of diversity and genetic distances were considered. Overall, genetic relatedness within Native American groups does not correlate with geographical and linguistic structure, although strong grouping for Native Americans with East Asians was demonstrated, with clear discrimination from African and European groups. Most of the variation was assigned to differences occurring within groups, but the interpopulation variation found for South Amerindians was recognizably higher in comparison to the other sampled groups of populations. Our data suggest that bottleneck events followed by strong influence of genetic drift in the process of the peopling of the Americas may have been determinant factors in delineating the genetic background of present-day South Amerindians. Since no clear subgroups were detected within Native Americans and East Asians, there is no indication of multiple waves in the early colonization of the New World. (c) 2005 Wiley-Liss, Inc.

Early vocabulary development in deaf native signers: a British Sign Language adaptation of the communicative development inventories.

PubMed

Woolfe, Tyron; Herman, Rosalind; Roy, Penny; Woll, Bencie

2010-03-01

There is a dearth of assessments of sign language development in young deaf children. This study gathered age-related scores from a sample of deaf native signing children using an adapted version of the MacArthur-Bates CDI (Fenson et al., 1994). Parental reports on children's receptive and expressive signing were collected longitudinally on 29 deaf native British Sign Language (BSL) users, aged 8-36 months, yielding 146 datasets. A smooth upward growth curve was obtained for early vocabulary development and percentile scores were derived. In the main, receptive scores were in advance of expressive scores. No gender bias was observed. Correlational analysis identified factors associated with vocabulary development, including parental education and mothers' training in BSL. Individual children's profiles showed a range of development and some evidence of a growth spurt. Clinical and research issues relating to the measure are discussed. The study has developed a valid, reliable measure of vocabulary development in BSL. Further research is needed to investigate the relationship between vocabulary acquisition in native and non-native signers.

Sequential air sampler system : its use by the Virginia Department of Highways & Transportation.

DOT National Transportation Integrated Search

1975-01-01

The Department of Highways & Transportation needs an economical and efficient air quality sampling system for meeting requirements on air monitoring for proposed projects located In critical areas. Two sequential air sampling systems, the ERAI and th...

Identification of Chemicals of Interest to the Department of Defense and U.S. Air Force Among the U.S. Environmental Protection Agency’s Integrated Risk Information System Chemicals that are Due for Reassessment of their Toxicity Values

DTIC Science & Technology

2010-03-16

Exceeded at ERP Soil and Groundwater Sites 86 A-2a. Identification of IRIS Chemicals of Interest on the ATSDR CERCLA Priority List of Hazardous...the Number (Bold Font) of Air Force ERP Samples in Which They Were Detected 317 A-4d. Air Force ERP Soil Samples: IRIS Chemicals of Interest...Ranked by the Number (Bold Font) of Air Force ERP Soil Samples in Which They Were Detected 333 A-4e. Air Force ERP Groundwater Samples: IRIS Chemicals of

Presence of pathogenic microorganisms in power-plant cooling waters. Final report, October 1, 1981-June 30, 1983

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tyndall, R.L.

1983-07-01

Air was sampled at the point of discharge and at short distances downwind and upwind from industrial and power-plant cooling towers. Both high-volume electrostatic and impinger type samplers were used. Concentrates of the air samples were analyzed for Legionnaires' Disease Bacteria (LDB). In some cases, the samples were also tested for the presence of free-living amoebae. The concentrations of LDB in the air samples were well below the minimal infectious dose for guinea pigs and precluded testing of the samples for infectious LDB. Results of LDB analysis were related to the meteorological conditions at the time of sampling. Generally, themore » concentrations of LDB in the air at the discharge of the cooling towers were 1 x 10/sup -6/ to 1 x 10/sup -7/ of that found in comparable volumes of tower basin water. During periods of high humidity and wind speed, LDB was detected in a few downwind samples and one upwind sample. One site with extensive construction and excavation activity had higher LDB concentrations in air samples relative to other sites. Nonpathogenic Naegleria were present in one of two air samples taken in the mist at the base of a natural-draft cooling tower.« less

Unusual population attributes of invasive red-eared slider turtles (Trachemys scripta elegans) in Japan: do they have a performance advantage?

USGS Publications Warehouse

Taniguchi, Mari; Lovich, Jeffrey E.; Mine, Kanako; Ueno, Shintaro; Kamezaki, Naoki

2017-01-01

The slider turtle (Trachemys scripta Thunberg in Schoepff, 1792) is native to the USA and Mexico. Due to the popularity of their colorful hatchlings as pets, they have been exported worldwide and are now present on all continents, except Antarctica. Slider turtles are well-established in Japan and occupy aquatic habitats in urban and agricultural areas, to the detriment of native turtles with which they compete. We asked the overall question, do slider turtles in Japan have a performance advantage because they are liberated from the numerous competing turtle species in their native range and released from many of their natural predators? Traits compared included various measures of adult body size (mean, maximum), female size at maturity as measured by size of gravid females, clutch size, population density and biomass, sex ratio, and sexual size dimorphism, the latter two a partial reflection of growth and maturity differences between the sexes. We sampled slider turtle populations in three habitats in Japan and compared population attributes with published data for the species from throughout its native range in the USA. Mean male body sizes were at the lower end of values from the USA suggesting that males in Japan may mature at smaller body sizes. The smallest gravid females in Japan mature at smaller body sizes but have mean clutch sizes larger than some populations in the USA. Compared to most populations in the USA, slider turtles achieve higher densities and biomasses in Japanese wetlands, especially the lotic system we sampled. Sex ratios were female-biased, the opposite of what is reported for many populations in protected areas of the USA. Sexual size dimorphism was enhanced relative to native populations with females as the larger sex. The enhanced dimorphism is likely a result of earlier size of maturity in Japanese males and the large size of mature (gravid) Japanese females. Slider turtles appear to have a performance advantage over native turtles in Japan, possibly as a result of being released from competition with numerous sympatric turtle species in their native range, and the absence of many co-evolved predators and parasites in Japan. This slight competitive edge, coupled with the catholic diet and broad tolerance of varying aquatic habitats of slider turtles, is reflected in their dominance over native and naturalized Japanese turtles in altered aquatic habitats.

Socioeconomic disparities in intimate partner violence against Native American women: a cross-sectional study

PubMed Central

Malcoe, Lorraine Halinka; Duran, Bonnie M; Montgomery, Juliann M

2004-01-01

Background Intimate partner violence (IPV) against women is a global public health problem, yet data on IPV against Native American women are extremely limited. We conducted a cross-sectional study of Native American women to determine prevalence of lifetime and past-year IPV and partner injury; examine IPV in relation to pregnancy; and assess demographic and socioeconomic correlates of past-year IPV. Methods Participants were recruited from a tribally-operated clinic serving low-income pregnant and childbearing women in southwest Oklahoma. A self-administered survey was completed by 312 Native American women (96% response rate) attending the clinic from June through August 1997. Lifetime and past-year IPV were measured using modified 18-item Conflict Tactics Scales. A socioeconomic index was created based on partner's education, public assistance receipt, and poverty level. Results More than half (58.7%) of participants reported lifetime physical and/or sexual IPV; 39.1% experienced severe physical IPV; 12.2% reported partner-forced sexual activity; and 40.1% reported lifetime partner-perpetrated injuries. A total of 273 women had a spouse or boyfriend during the previous 12 months (although all participants were Native American, 59.0% of partners were non-Native). Among these women, past-year prevalence was 30.1% for physical and/or sexual IPV; 15.8% for severe physical IPV; 3.3% for forced partner-perpetrated sexual activity; and 16.4% for intimate partner injury. Reported IPV prevalence during pregnancy was 9.3%. Pregnancy was not associated with past-year IPV (odds ratio = 0.9). Past-year IPV prevalence was 42.8% among women scoring low on the socioeconomic index, compared with 10.1% among the reference group. After adjusting for age, relationship status, and household size, low socioeconomic index remained strongly associated with past-year IPV (odds ratio = 5.0; 95% confidence interval: 2.4, 10.7). Conclusions Native American women in our sample experienced exceptionally high rates of lifetime and past-year IPV. Additionally, within this low-income sample, there was strong evidence of socioeconomic variability in IPV. Further research should determine prevalence of IPV against Native American women from diverse tribes and regions, and examine pathways through which socioeconomic disadvantage may increase their IPV risk. PMID:15157273

Long-distance dispersal of plants by vehicles as a driver of plant invasions.

PubMed

von der Lippe, Moritz; Kowarik, Ingo

2007-08-01

Roadsides are preferential migration corridors for invasive plant species and can act as starting points for plant invasions into adjacent habitats. Rapid spread and interrupted distribution patterns of introduced plant species indicate long-distance dispersal along roads. The extent to which this process is due to species' migration along linear habitats or, alternatively, to seed transport by vehicles has not yet been tested systematically. We tested this by sampling seeds inside long motorway tunnels to exclude nontraffic dispersal. Vehicles transported large amounts of seeds. The annual seed rain caused by vehicles on the roadsides of five different tunnel lanes within three tunnels along a single urban motorway in Berlin, Germany, ranged from 635 to 1579 seeds/m(2)/year. Seeds of non-native species accounted for 50.0% of the 204 species and 54.4% of the total 11,818 seeds trapped inside the tunnels. Among the samples were 39 (19.1%) highly invasive species that exhibit detrimental effects on native biodiversity in some parts of the world. By comparing the flora in the tunnel with that adjacent to the tunnel entrances we confirmed long-distance dispersal events (>250 m) for 32.3% of the sampled species. Seed sources in a radius of 100 m around the entrances of the tunnels had no significant effect on species richness and species composition of seed samples from inside the tunnels, indicating a strong effect of long-distance dispersal by vehicles. Consistently, the species composition of the tunnel seeds was more similar to the regional roadside flora of Berlin than to the local flora around the tunnel entrances. Long-distance dispersal occurred significantly more frequently in seeds of non-native (mean share 38.5%) than native species (mean share 4.1%). Our results showed that long-distance dispersal by vehicles was a routine rather than an occasional mechanism. Dispersal of plants by vehicles will thus accelerate plant invasions and induce rapid changes in biodiversity patterns.

Air sampling results in relation to extent of fungal colonization of building materials in some water-damaged buildings.

PubMed

Miller, J D; Haisley, P D; Reinhardt, J H

2000-09-01

We studied the extent and nature of fungal colonization of building materials in 58 naturally ventilated apartments that had suffered various kinds of water damage in relation to air sampling done before the physical inspections. The results of air samples from each apartment were compared by rank order of species with pooled data from outdoor air. Approximately 90% of the apartments that had significant amounts of fungi in wall cavities were identified by air sampling. There was no difference in the average fungal colony forming unit values per m3 between the 15 apartments with the most fungal contamination and the 15 with the least. In contrast, the prevalence of samples with fungal species significantly different than the pooled outdoor air between the more contaminated versus the less contaminated apartments was approximately 10-fold. We provide information on methods to document fungal contamination in buildings.

Detection of the urban release of a bacillus anthracis simulant by air sampling.

PubMed

Garza, Alexander G; Van Cuyk, Sheila M; Brown, Michael J; Omberg, Kristin M

2014-01-01

In 2005 and 2009, the Pentagon Force Protection Agency (PFPA) staged deliberate releases of a commercially available organic pesticide containing Bacillus amyloliquefaciens to evaluate PFPA's biothreat response protocols. In concert with, but independent of, these releases, the Department of Homeland Security sponsored experiments to evaluate the efficacy of commonly employed air and surface sampling techniques for detection of an aerosolized biological agent. High-volume air samplers were placed in the expected downwind plume, and samples were collected before, during, and after the releases. Environmental surface and personal air samples were collected in the vicinity of the high-volume air samplers hours after the plume had dispersed. The results indicate it is feasible to detect the release of a biological agent in an urban area both during and after the release of a biological agent using high-volume air and environmental sampling techniques.

Effects of citric acid esterification on digestibility, structural and physicochemical properties of cassava starch.

PubMed

Mei, Ji-Qiang; Zhou, Da-Nian; Jin, Zheng-Yu; Xu, Xue-Ming; Chen, Han-Qing

2015-11-15

In this study, citric acid was used to react with cassava starch in order to compare the digestibility, structural and physicochemical properties of citrate starch samples. The results indicated that citric acid esterification treatment significantly increased the content of resistant starch (RS) in starch samples. The swelling power and solubility of citrate starch samples were lower than those of native starch. Compared with native starch, a new peak at 1724 cm(-1) was appeared in all citrate starch samples, and crystalline peaks of all starch citrates became much smaller or even disappeared. Differential scanning calorimetry results indicated that the endothermic peak of citrate starches gradually shrank or even disappeared. Moreover, the citrate starch gels exhibited better freeze-thaw stability. These results suggested that citric acid esterification induced structural changes in cassava starch significantly affected its digestibility and it could be a potential method for the preparation of RS with thermal stability. Copyright © 2015 Elsevier Ltd. All rights reserved.

Legionnaires' Disease Bacteria in power plant cooling systems: downtime report. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tyndall, R.L.; Solomon, J.A.; Christensen, S.W.

1985-04-01

Legionnaires' Disease Bacteria (Legionella) are a normal part of the aquatic community that, when aerosolized, can be pathogenic to man. The downtime study was designed to determine the degree to which Legionella populations are aerosolized during cleaning and maintenance operations in a closed-cycle steam-electric power plant. Both high-volume and impinger air samples were collected prior to and during downtime operations. Emphasis was placed on sampling inside or adjacent to water boxes, condensers, and cooling towers. Control air samples were taken upwind from the plant site. Water and sludge samples were also collected at various locations. In the laboratory, the concentrationsmore » of Groups A, B, and C Legionella were determined using the direct fluorescent antibody method. All positive air samples, and other selected air samples, were injected into guinea pigs to detect infectious Legionella. Legionella could be detected in only 12 of the 126 air samples collected. These were predominantly Group A Legionella (L. pneumophila, serogroups 1 to 6). All 12 positive samples had been collected in the vicinity of water boxes, condensers, detention ponds, and cooling towers during downtime operations where aerosolization of Legionella populations would be expected. None of the air samples yielded infectious Legionella when injected into guinea pigs. Detection of Legionella in air samples taken during downtime was significantly more likely than detection during normal operating conditions (p <0.01). 13 refs., 4 figs., 10 tabs.« less

Native Perennial Forb Variation Between Mountain Big Sagebrush and Wyoming Big Sagebrush Plant Communities

NASA Astrophysics Data System (ADS)

Davies, Kirk W.; Bates, Jon D.

2010-09-01

Big sagebrush ( Artemisia tridentata Nutt.) occupies large portions of the western United States and provides valuable wildlife habitat. However, information is lacking quantifying differences in native perennial forb characteristics between mountain big sagebrush [ A. tridentata spp. vaseyana (Rydb.) Beetle] and Wyoming big sagebrush [ A. tridentata spp. wyomingensis (Beetle & A. Young) S.L. Welsh] plant communities. This information is critical to accurately evaluate the quality of habitat and forage that these communities can produce because many wildlife species consume large quantities of native perennial forbs and depend on them for hiding cover. To compare native perennial forb characteristics on sites dominated by these two subspecies of big sagebrush, we sampled 106 intact big sagebrush plant communities. Mountain big sagebrush plant communities produced almost 4.5-fold more native perennial forb biomass and had greater native perennial forb species richness and diversity compared to Wyoming big sagebrush plant communities ( P < 0.001). Nonmetric multidimensional scaling (NMS) and the multiple-response permutation procedure (MRPP) demonstrated that native perennial forb composition varied between these plant communities ( P < 0.001). Native perennial forb composition was more similar within plant communities grouped by big sagebrush subspecies than expected by chance ( A = 0.112) and composition varied between community groups ( P < 0.001). Indicator analysis did not identify any perennial forbs that were completely exclusive and faithful, but did identify several perennial forbs that were relatively good indicators of either mountain big sagebrush or Wyoming big sagebrush plant communities. Our results suggest that management plans and habitat guidelines should recognize differences in native perennial forb characteristics between mountain and Wyoming big sagebrush plant communities.

The cosmic native iron in Upper Jurassic to Miocene deep-sea deposits of the western North Atlantic

NASA Astrophysics Data System (ADS)

Murdmaa, Ivar; Pechersky, Diamar; Nurgaliev, Danis; Gilmanova, Di; Sloistov, Sergey

2014-05-01

Thermomagnetic analysis of 335 rock samples from DSDP sites 386, 387 (Leg 43) and 391 A, C (Leg 44) drilled in the western North Atlantic revealed distribution patterns of native Fe particles in Upper Jurassic to Miocene deep-sea deposits. Native iron occurs in deep-sea rocks as individual particles from tens of nm to 100 µm in size. The native Fe is identified throughout the sections recovered. Its concentration ranges from nx10-6% to 5x10-3%, but zero values persist to occur in each lithostratigraphic unit studied. The bimodal distribution of the native iron concentration with a zero mode is typical for the cosmic dust in sedimentary rocks, because of its slow flux to the Earth surface, as compared to sedimentation fluxes. Ni admixture in native Fe also demonstrates bimodal distribution with the zero mode (pure Fe) and a mode 5 - 6% that corresponds to average Ni content in the cosmic dust and meteorites. Concentration of native Fe does not depend on rock types and geological age. Relatively high mean native Fe concentrations (less zero values) occur in Lower Cretaceous laminated limestones (sites 387, 391) interpreted as contourites and in Oligocene volcaniclastic turbidites of the Bermuda Rise foot (Site 386), whereas minimum values are measured in Miocene mass flow deposits (Site 391). We suggest that concentration of native Fe increases in deposits of pulsating sedimentation (turbidites, laminated contourites) due to numerous short hiatuses and slow sedimentation events in between instantaneous turbidite or contourite deposition pulses. Extreme values possibly indicate cosmic dust flux anomalies. The study was partially supported by RFBR, research project No. 14-05-00744a.

[Microbial air monitoring in operating theatre: active and passive samplings].

PubMed

Pasquarella, C; Masia, M D; Nnanga, Nga; Sansebastiano, G E; Savino, A; Signorelli, C; Veronesi, L

2004-01-01

Microbial air contamination was evaluated in 11 operating theatres using active and passive samplings. SAS (Surface Air System) air sampling was used to evaluate cfu/m3 and settle plates were used to measure the index of microbial air contamination (IMA). Samplings were performed at the same time on three different days, at three different times (before, during and after the surgical activity). Two points were monitored (patient area and perimeter of the operating theatre). Moreover, the cfu/m3 were evaluated at the air inlet of the conditioner system. 74.7% of samplings performed at the air inlet and 66.7% of the samplings performed at the patient area before the beginning of the surgical activity (at rest) exceeded the 35 cfu/m3 used as threshold value. 100% of IMA values exceeded the threshold value of 5. Using both active and passive sampling, the microbial contamination was shown to increase significantly during activity. The cfu values were higher at the patient area than at the perimeter of the operating theatre. Mean values of the cfu/m3 during activity at the patient area ranged from a minimum of 61+/-41 cfu/m3 to a maximum of 242+/-136 cfu/m3; IMA values ranged from a minimum of 19+/-10 to a maximum of 129+/-60. 15.2% of samplings performed at the patient area using SAS and 75.8% of samplings performed using settle plates exceeded the threshold values of 180 cfu/m3 and 25 respectively, with a significant difference of the percentages. The highest values were found in the operating theatre with inadequate structural and managerial conditions. These findings confirm that the microbiological quality of air may be considered a mirror of the hygienic conditions of the operating theatre. Settle plates proved to be more sensitive in detecting the increase of microbial air contamination related to conditions that could compromise the quality of the air in operating theatres.

Megafires in Chile 2017: Monitoring multiscale environmental impacts of burned ecosystems.

PubMed

de la Barrera, Francisco; Barraza, Francisco; Favier, Philomène; Ruiz, Vannia; Quense, Jorge

2018-05-17

During the summer of 2017, several megafires in South-Central Chile burned down forest plantations, native forests, shrublands and human settlements. National authorities identified the relevant effects of the wildfires on infrastructure and ecosystems. However, other indirect effects such as the risk of flooding or, increased air pollution were not assessed. The present study assesses: i) the geographic characterization of wildfires, ii) amount of damage to ecosystems and the severity of wildfires, iii) the effects of megafires on air quality in nearby and distant urban areas, and iv) identification of cities potentially exposed to landslides and flooding. We ran remote sensing analyses based on the Normalized Burn Ratio taken from Landsat imagery, "active fires" from MODIS, and ASTER GDEM. The particulate matter (PM 10 and PM 2.5 ) levels measured on 34 Chilean's municipalities were correlated with the burning area/distance ratio by Spearman correlation. Socionatural hazards were evaluated using multi-criteria analyses combining proximity to burned areas, severity, potential flow of water and sediments as indicated by the Digital Elevation Model, drainage networks and the location of human settlements. 91 burned areas were identified, covering 529,794 ha. The most affected ecosystems were forest plantations and native shrublands. We found significant correlations between burned area/distance ratios and PM 2.5 and PM 10 levels, leading to increased levels over the Chilean air quality standard in the most populated cities. 37 human settlements were at increased risk of landslides and flooding hazards after fires and eleven could now be characterized as dangerously exposed. The 2017 wildfires in Chile have had an impact at both a small and large scale, with far-reaching air pollutants dispersing and affecting >74% of the Chilean population. The impact of the wildfires was also extended over time, creating future potential for landslides and flooding, with the risk increasing in rainy seasons. Copyright © 2018. Published by Elsevier B.V.

Comparison of indoor air sampling and dust collection methods for fungal exposure assessment using quantitative PCR.

PubMed

Cox, Jennie; Indugula, Reshmi; Vesper, Stephen; Zhu, Zheng; Jandarov, Roman; Reponen, Tiina

2017-10-18

Evaluating fungal contamination indoors is complicated because of the many different sampling methods utilized. In this study, fungal contamination was evaluated using five sampling methods and four matrices for results. The five sampling methods were a 48 hour indoor air sample collected with a Button™ inhalable aerosol sampler and four types of dust samples: a vacuumed floor dust sample, newly settled dust collected for four weeks onto two types of electrostatic dust cloths (EDCs) in trays, and a wipe sample of dust from above floor surfaces. The samples were obtained in the bedrooms of asthmatic children (n = 14). Quantitative polymerase chain reaction (qPCR) was used to analyze the dust and air samples for the 36 fungal species that make up the Environmental Relative Moldiness Index (ERMI). The results from the samples were compared by four matrices: total concentration of fungal cells, concentration of fungal species associated with indoor environments, concentration of fungal species associated with outdoor environments, and ERMI values (or ERMI-like values for air samples). The ERMI values for the dust samples and the ERMI-like values for the 48 hour air samples were not significantly different. The total cell concentrations of the 36 species obtained with the four dust collection methods correlated significantly (r = 0.64-0.79, p < 0.05), with the exception of the vacuumed floor dust and newly settled dust. In addition, fungal cell concentrations of indoor associated species correlated well between all four dust sampling methods (r = 0.68-0.86, p < 0.01). No correlation was found between the fungal concentrations in the air and dust samples primarily because of differences in concentrations of Cladosporium cladosporioides Type 1 and Epicoccum nigrum. A representative type of dust sample and a 48 hour air sample might both provide useful information about fungal exposures.

Long-term record of Argentine ant invasions reveals enduring ecological impacts.

PubMed

Menke, Sean B; Ward, Philip S; Holway, David A

2018-05-01

The ecological effects of species introductions can change in magnitude over time, but an understanding of how and why they do so remains incompletely understood. Clarifying this issue requires consideration of how temporal variation in invader traits affects invasion impacts (e.g., through differential effects on the diversity and composition of native species assemblages). We examine the temporal dynamics of Argentine ant invasions in northern California by resurveying 202 sites first sampled 30-40 yr ago. To test how invasion impacts change over time, we estimated native ant richness and species composition at 20 riparian woodland sites that span a 30-yr invasion chronosequence. We then use these data to test how variation in two invader traits (aggression and relative abundance) is related to time since invasion and invasion impact. Native ant assemblages along the chronosequence exhibited reduced native ant richness and altered species composition (compared to uninvaded control sites), but the magnitude of these impacts was independent of time since invasion. These results are corroborated by additional temporal comparisons of native ant assemblages at riparian sites sampled 20-30 yr ago. Our findings together illustrate that the impacts of invasions can persist undiminished over at least a 30-yr time frame and remain evident at regional scales. Although neither invader trait varied with time since invasion, native ant richness declined as the relative abundance of the Argentine ant increased. This latter result supports the hypothesis that factors reducing invader abundance at particular sites can decrease invasion impacts, but also that such changes may be due to site-specific factors (e.g., abiotic conditions) that affect invader abundance rather than time since invasion per se. Future studies should attempt to differentiate factors that are intrinsic to the process of invasion (e.g., changes in invader populations) from long-term environmental changes (e.g., climate change) that represent extrinsic influences on the dynamics of invasion. © 2018 by the Ecological Society of America.

Consequences of buffelgrass pasture development for primary productivity, perennial plant richness, and vegetation structure in the drylands of Sonora, Mexico.

PubMed

Franklin, Kimberly; Molina-Freaner, Francisco

2010-12-01

In large parts of northern Mexico native plant communities are being converted to non-native buffelgrass (Pennisetum ciliare) pastures, and this conversion could fundamentally alter primary productivity and species richness. In Sonora, Mexico land conversion is occurring at a regional scale along a rainfall-driven gradient of primary productivity, across which native plant communities transition from desert scrub to thorn scrub. We used a paired sampling design to compare a satellite-derived index of primary productivity, richness of perennial plant species, and canopy-height profiles of native plant communities with buffelgrass pastures. We sampled species richness across a gradient of primary productivity in desert scrub and thorn scrub vegetation to examine the influence of site productivity on the outcomes of land conversion. We also examined the influence of pasture age on species richness of perennial plants. Index values of primary productivity were lower in buffelgrass pastures than in native vegetation, which suggests a reduction in primary productivity. Land conversion reduced species richness by approximately 50% at local and regional scales, reduced tree and shrub cover by 78%, and reduced canopy height. Land conversion disproportionately reduced shrub species richness, which reflects the common practice among Sonoran ranchers of conserving certain tree and cactus species. Site productivity did not affect the outcomes of land conversion. The age of a buffelgrass pasture was unrelated to species richness within the pasture, which suggests that passive recovery of species richness to preconversion levels is unlikely. Our findings demonstrate that land conversion can result in large losses of plant species richness at local and regional scales and in substantial changes to primary productivity and vegetation structure, which casts doubt on the feasibility of restoring native plant communities without active intervention on the part of land managers. © 2010 Society for Conservation Biology.

Sensitivity to dietary phosphorus limitation in native vs. invasive lineages of a New Zealand freshwater snail.

PubMed

Neiman, Maurine; Krist, Amy

2016-10-01

Why some species and lineages are more likely to be invasive than others is one of the most important unanswered questions in basic and applied biology. In particular, the relative contributions to the invasion process of factors like pre-adaptation to invasiveness in the native range, evolution post-colonization, and random vs. non-random sampling of colonist lineages remain unclear. We use a powerful common garden approach to address the potential for a role for sensitivity to nutrient limitation in determining the invasiveness of particular lineages of Potamopyrgus antipodarum, a New Zealand freshwater snail that has become globally invasive. We quantified specific growth rate (SGR), an important fitness-related trait in this species, under high phosphorus (P) vs. low-P conditions for a diverse set of native and invasive P. antipodarum. This experiment revealed that native-range P. antipodarum experience a more severe decline in SGR in low-P conditions relative to SGR in high-P conditions than their invasive range counterparts. Although these results suggest resilience to P limitation in invasive lineages, the absence of significant absolute differences in SGR between native and invasive lineages indicates that a straightforward connection between response to P limitation and invasiveness in P. antipodarum is unlikely. Regardless, our data demonstrate that invasive vs. native lineages of P. antipodarum exhibit consistently different responses to an important environmental variable that is rarely studied in the context of invasion success. Further studies directed at exploring and disentangling the roles of sampling effects, selection on preexisting variation, and evolution after colonization will be required to provide a comprehensive picture of the role (or lack thereof) of nutrient limitation in the global invasion of P. antipodarum, as well for as other invasive taxa. © 2016 by the Ecological Society of America.

Protein functional landscapes, dynamics, allostery: a tortuous path towards a universal theoretical framework.

PubMed

Zhuravlev, Pavel I; Papoian, Garegin A

2010-08-01

Energy landscape theories have provided a common ground for understanding the protein folding problem, which once seemed to be overwhelmingly complicated. At the same time, the native state was found to be an ensemble of interconverting states with frustration playing a more important role compared to the folding problem. The landscape of the folded protein - the native landscape - is glassier than the folding landscape; hence, a general description analogous to the folding theories is difficult to achieve. On the other hand, the native basin phase volume is much smaller, allowing a protein to fully sample its native energy landscape on the biological timescales. Current computational resources may also be used to perform this sampling for smaller proteins, to build a 'topographical map' of the native landscape that can be used for subsequent analysis. Several major approaches to representing this topographical map are highlighted in this review, including the construction of kinetic networks, hierarchical trees and free energy surfaces with subsequent structural and kinetic analyses. In this review, we extensively discuss the important question of choosing proper collective coordinates characterizing functional motions. In many cases, the substates on the native energy landscape, which represent different functional states, can be used to obtain variables that are well suited for building free energy surfaces and analyzing the protein's functional dynamics. Normal mode analysis can provide such variables in cases where functional motions are dictated by the molecule's architecture. Principal component analysis is a more expensive way of inferring the essential variables from the protein's motions, one that requires a long molecular dynamics simulation. Finally, the two popular models for the allosteric switching mechanism, 'preexisting equilibrium' and 'induced fit', are interpreted within the energy landscape paradigm as extreme points of a continuum of transition mechanisms. Some experimental evidence illustrating each of these two models, as well as intermediate mechanisms, is presented and discussed.

The role of Surinamese migrants in the transmission of Chlamydia trachomatis between Paramaribo, Suriname and Amsterdam, The Netherlands.

PubMed

Bom, Reinier J M; van der Helm, Jannie J; Bruisten, Sylvia M; Grünberg, Antoon W; Sabajo, Leslie O A; Schim van der Loeff, Maarten F; de Vries, Henry J C

2013-01-01

The large Surinamese migrant population in the Netherlands is a major risk group for urogenital Chlamydia trachomatis infection. Suriname, a former Dutch colony, also has a high prevalence of C. trachomatis. Surinamese migrants travel extensively between the Netherlands and Suriname. Our objective was to assess whether the Surinamese migrants in the Netherlands form a bridge population facilitating transmission of C. trachomatis between Suriname and the Netherlands. If so, joint prevention campaigns involving both countries might be required. Between March 2008 and July 2010, participants were recruited at clinics in Paramaribo, Suriname and in Amsterdam, the Netherlands. Participants were grouped as native Surinamese, native Dutch, Surinamese migrant, Dutch migrant, or Other, based on country of residence and country of birth of the participant and of their parents. Risk behavior, such as sexual mixing between ethnic groups, was recorded and C. trachomatis positive samples were typed through multilocus sequence typing (MLST). A minimum spanning tree of samples from 426 participants showed four MLST clusters. The MLST strain distribution of Surinamese migrants differed significantly from both the native Surinamese and Dutch populations, but was not an intermediate state between these two populations. Sexual mixing between the Surinamese migrants and the Dutch and Surinamese natives occurred frequently. Yet, the MLST cluster distribution did not differ significantly between participants who mixed and those who did not. Sexual mixing occurred between Surinamese migrants in Amsterdam and the native populations of Suriname and the Netherlands. These migrants, however, did not seem to form an effective bridge population for C. trachomatis transmission between the native populations. Although our data do not seem to justify the need for joint campaigns to reduce the transmission of C. trachomatis strains between both countries, intensified preventive campaigns to decrease the C. trachomatis burden are required, both in Suriname and in the Netherlands.

Single nucleotide polymorphisms in native South American Atlantic coast populations of smooth shelled mussels: hybridization with invasive European Mytilus galloprovincialis.

PubMed

Zbawicka, Małgorzata; Trucco, María I; Wenne, Roman

2018-02-22

Throughout the world, harvesting of mussels Mytilus spp. is based on the exploitation of natural populations and aquaculture. Aquaculture activities include transfers of spat and live adult mussels between various geographic locations, which may result in large-scale changes in the world distribution of Mytilus taxa. Mytilus taxa are morphologically similar and difficult to distinguish. In spite of much research on taxonomy, evolution and geographic distribution, the native Mytilus taxa of the Southern Hemisphere are poorly understood. Recently, single nucleotide polymorphisms (SNPs) have been used to clarify the taxonomic status of populations of smooth shelled mussels from the Pacific coast of South America. In this paper, we used a set of SNPs to characterize, for the first time, populations of smooth shelled mussels Mytilus from the Atlantic coast of South America. Mytilus spp. samples were collected from eastern South America. Six reference samples from the Northern Hemisphere were used: Mytilus edulis from USA and Northern Ireland, Mytilus trossulus from Canada, and Mytilus galloprovincialis from Spain and Italy. Two other reference samples from the Southern Hemisphere were included: M. galloprovincialis from New Zealand and Mytilus chilensis from Chile. Fifty-five SNPs were successfully genotyped, of which 51 were polymorphic. Population genetic analyses using the STRUCTURE program revealed the clustering of eight populations from Argentina (Mytilus platensis) and the clustering of the sample from Ushuaia with M. chilensis from Chile. All individuals in the Puerto Madryn (Argentina) sample were identified as M. platensis × M. galloprovincialis F2 (88.89%) hybrids, except one that was classified as Mediterranean M. galloprovincialis. No F1 hybrids were observed. We demonstrate that M. platensis (or Mytilus edulis platensis) and M. chilensis are distinct native taxa in South America, which indicates that the evolutionary histories of Mytilus taxa along the Atlantic and Pacific coasts differ. M. platensis is endangered by hybridization with M. galloprovincialis that was introduced from Europe into the Puerto Madryn area in Argentina, presumably by accidental introduction via ship traffic. We confirm the occurrence of a native M. chilensis population in southern Argentina on the coast of Patagonia.

Association between Y haplogroups and autosomal AIMs reveals intra-population substructure in Bolivian populations.

PubMed

Vullo, Carlos; Gomes, Verónica; Romanini, Carola; Oliveira, Andréa M; Rocabado, Omar; Aquino, Juliana; Amorim, António; Gusmão, Leonor

2015-07-01

For the correct evaluation of the weight of genetic evidence in a forensic context, databases must reflect the structure of the population, with all possible groups being represented. Countries with a recent history of admixture between strongly differentiated populations are usually highly heterogeneous and sub-structured. Bolivia is one of these countries, with a high diversity of ethnic groups and different levels of admixture (among Native Americans, Europeans and Africans) across the territory. For a better characterization of the male lineages in Bolivia, 17 Y-STR and 42 Y-SNP loci were genotyped in samples from La Paz and Chuquisaca. Only European and Native American Y-haplogroups were detected, and no sub-Saharan African chromosomes were found. Significant differences were observed between the two samples, with a higher frequency of European lineages in Chuquisaca than in La Paz. A sample belonging to haplogroup Q1a3a1a1-M19 was detected in La Paz, in a haplotype background different from those previously found in Argentina. This result supports an old M19 North-south dispersion in South America, possibly via two routes. When comparing the ancestry of each individual assessed through his Y chromosome with the one estimated using autosomal AIMs, (a) increased European ancestry in individuals with European Y chromosomes and (b) higher Native American ancestry in the carriers of Native American Y-haplogroups were observed, revealing an association between autosomal and Y-chromosomal markers. The results of this study demonstrate that a sub-structure does exist in Bolivia at both inter- and intrapopulation levels, a fact which must be taken into account in the evaluation of forensic genetic evidence.

Polymorphisms of HIV RT Gene Among the ART Naïve Native Drug Exposed Rural PLHA.

PubMed

Krishnan, K Mohana; Amsavathani, Sk

2012-04-01

The number of people living with human immunodeficiency virus (HIV) is increasing day by day in India. The disease has now spread from urban areas to rural areas. The proof reading of the reverse transcriptase enzyme is poor, which may lead to genetic diversity within the HIV strains, which in turn leads to problems like failure or resistance in antiretroviral treatment. This study is designed to find out the polymorphisms of the reverse transcriptase gene of HIV, after the native drug pressure among antiretroviral therapy (ART) naïve rural people living with HIV/AIDS (RPLHA). A total of 207 HIV-Reactive patients were allowed to take native drugs from the local area and were advised to attend the center for HIV after six months for a follow-up. At the time of the follow-up visit, a second blood sample was taken from 20 reactive native-drug exposed ART-naïve patients. The plasma was separated and transported at 20°C to the YRG Care Center for genotyping. Among the 20 HIV-reactive samples processed for gene sequencing analysis to detect the genotypic variations, only one sample (5%) showed high-level mutational resistance variations and the predominant polymorphisms detected were V35T (100%), K122E (94.44%), and V60I (88.88%). The presence of drug-resistance mutations, although minimal, was important, as the drug-resistant strains could spread among the RPLHA and to their sexual partners. There was a definite need to generate a drug resistance database and the polymorphic pattern of Indian strains concern to the future clinical management of the disease, and a vaccine design to contain the disease.

First Evidence of Epithermal Gold Occurrences in the SE Afar Rift, Republic of Djibouti

NASA Astrophysics Data System (ADS)

Moussa, Nima; Fouquet, Yves; Caminiti, Antoine Marie; Le Gall, Bernard; Rolet, Joel; Bohn, Marcel; Etoubleau, Joel; Delacourt, Christophe; Jalludin, Mohamed

2010-05-01

The Republic of Djibouti, located at the SE part of the Afar volcanic Triangle, is characterized by intense tectonic and bimodal volcanic activity, and is emplaced over an earlier magmatic rift system, as old as 25-30 Ma. Each magmatic event is accompanied by hydrothermal activity. Few works have been so far published on hydrothermal mineralization in the Afar area. Mineralization generally occur as veins and are mainly associated with acidic volcanic intrusions along the fractures at the edges of grabens established during the last 4 Ma. Eighty samples from hydrothermal quartz ± carbonate veins and breccias were studied on 9 different sites representative of 4 main volcanic events ranging in age from early Miocene up to Present. Gold was found in excess of 200 ppb in 30% of the samples. Mineralogical analyses based on optical reflected light microscopy, X-Ray diffractometry, X-Ray fluorescence, inductively coupled plasma mass spectroscopy and electron microprobe, led us to identify two types of gold mineralization (i) native gold, electrum, hessite and sulfides (chalcopyrite, pyrite, bornite, ± sphalerite, and galena) in massive quartz breccias and banded chalcedony, (ii) gold, electrum, hematite, magnetite, trace minerals (argentite) and adularia in banded chalcedony. Another group without gold is characterized by quartz, pyrite ± goethite. Secondary minerals are characterized by goethite, native silver and native copper. Arsenic is enriched in pyrite in samples with a high gold content. The bimodal volcanism, the occurrence of adularia, the native gold and electrum in banded silica veins, are classically observed in neutral epithermal systems. The discovery of this type of mineralization in a recent-active continental rift system supplies new insights about hydrothermal processes associated with volcanic activity in a spreading context. Keywords: Republic of Djibouti, Afar Triangle, Hydrothermal, Epithermal system, Gold

Relative abundance and distribution of fishes within an established Area of Critical Environmental Concern, of the Amargosa River Canyon and Willow Creek, Inyo and San Bernardino Counties, California

USGS Publications Warehouse

Scoppettone, G. Gary; Hereford, Mark E.; Rissler, Peter H.; Johnson, Danielle M.; Salgado, Antonio

2011-01-01

The Amargosa River Canyon of San Bernardino and Inyo County, California, has been designated by the Bureau of Land Management as an Area of Critical Environmental Concern, due in part to its unique flora and fauna. As a task of the Area of Critical Environmental Concern implementation plan, a survey of native fishes was conducted from June 21 to August 12, 2010. Geographic Information System tools were used to map sampling locations, which were spaced at 50-meter intervals. Global Positioning Systems were used to locate sampling stations, and stations with adequate water for successful trapping were sampled with baited minnow traps. Amargosa River pupfish (Cyprinodon nevadensis amargosae) and speckled dace (Rhinichthys osculus spp.) were widespread throughout Armargosa River Canyon. Throughout the study area 8,558 pupfish were captured at 194 stations; 3,472 speckled dace were captured at 210 stations; 238 red-swamp crayfish (Procambarus clarkia) were captured at 83 stations; and 1,095 western mosquitofish (Gambusia affinus) were captured at 110 stations. Pupfish were most abundant in open water habitat with native riparian vegetation, and they were significantly less abundant where the stream was completely covered by cattails or where saltcedar (Tamarix sp.) dominated the riparian corridor. There was no relationship between stream cover and speckled dace distribution. Non-native western mosquitofish and red-swamp crayfish densities were significantly higher in stream reaches dominated by saltcedar. The continued spread of saltcedar threatens to negatively affect pupfish and potentially reduce speckled dace abundance throughout the Amargosa River Canyon. This study can serve as baseline information for observing native fish populations in the future, as related to potential changes to the Amargosa River Canyon ecosystem.

The Bees among Us: Modelling Occupancy of Solitary Bees

PubMed Central

MacIvor, J. Scott; Packer, Laurence

2016-01-01

Occupancy modelling has received increasing attention as a tool for differentiating between true absence and non-detection in biodiversity data. This is thought to be particularly useful when a species of interest is spread out over a large area and sampling is constrained. We used occupancy modelling to estimate the probability of three phylogenetically independent pairs of native—introduced species [Megachile campanulae (Robertson)—Megachile rotundata (Fab.), Megachile pugnata Say—Megachile centuncularis (L.), Osmia pumila Cresson—Osmia caerulescens (L.)] (Apoidea: Megachilidae) being present when repeated sampling did not always find them. Our study occurred along a gradient of urbanization and used nest boxes (bee hotels) set up over three consecutive years. Occupancy modelling discovered different patterns to those obtained by species detection and abundance-based data alone. For example, it predicted that the species that was ranked 4th in terms of detection actually had the greatest occupancy among all six species. The native M. pugnata had decreased occupancy with increasing building footprint and a similar but not significant pattern was found for the native O. pumila. Two introduced bees (M. rotundata and M. centuncularis), and one native (M. campanulae) had modelled occupancy values that increased with increasing urbanization. Occupancy probability differed among urban green space types for three of six bee species, with values for two native species (M. campanulae and O. pumila) being highest in home gardens and that for the exotic O. caerulescens being highest in community gardens. The combination of occupancy modelling with analysis of habitat variables as an augmentation to detection and abundance-based sampling is suggested to be the best way to ensure that urban habitat management results in the desired outcomes. PMID:27911954

Armed Forces 1996 Equal Opportunity Survey: Administration, Datasets, and Codebook

DTIC Science & Technology

1997-12-01

was taken in the preparation of analysis files. These files balance two needs: public access to data with sufficient information for accurate estimates...Native American/Alaskan Native, and Other. The duty location variable has two levels: US (a duty station in any of the 50 states or the District of...More specifically, the new DMDC procedures most closely follow CASRO’s Sample Type U design. As discussed by CASRO, the overall response rate has two

Defect chemistry and characterization of Hg sub 1x Cd sub x Te

NASA Technical Reports Server (NTRS)

Vydyanath, H. R.

1982-01-01

Single crystal samples of undoped and doped Hg sub 1-x Cd sub x Te were annealed at varying temperatures and partial pressures of Hg. Hall effect and mobility measurements were carried out on these samples after quenching to room temperature. Based on the variation of the carrier concentration and the carrier mobility as a function of the partial pressure of Hg temperature, and dopant concentration, defect models were established for the doped and the undoped crystals. These models indicate that the native acceptor defects in both Hg0.8Cd0.2Te and Hg0.6Cd0.4Te doubly ionized and the native donor defects are negligible in concentration, implying that p to n conversion in these alloys occurs due only to residual donors. Incorporation mechanism of copper, indium, iodine, and phosphorus were investigated. A large concentration of indium is found to be paired with the native acceptor defects. Results on crystals doped with phosphorus indicate that phosphorus behaves amphoterically, acting as a donor on Hg lattice sites and as an acceptor intersitially on Te lattice sites. A majority of the phosphorus is found to be present as neutral species formed from the pairing reaction between phosphorus on Hg lattice sites and phosphorus in interstitial sites. Equilibrium constants for the intrinsic excitation reaction, as well as for the incorporation of the different dopants and the native acceptor defects were established.

Honeybees Increase Fruit Set in Native Plant Species Important for Wildlife Conservation

NASA Astrophysics Data System (ADS)

Cayuela, Luis; Ruiz-Arriaga, Sarah; Ozers, Christian P.

2011-11-01

Honeybee colonies are declining in some parts of the world. This may have important consequences for the pollination of crops and native plant species. In Spain, as in other parts of Europe, land abandonment has led to a decrease in the number of non professional beekeepers, which aggravates the problem of honeybee decline as a result of bee diseases In this study, we investigated the effects of honeybees on the pollination of three native plant species in northern Spain, namely wildcherry Prunus avium L., hawthorn Crataegus monogyna Jacq., and bilberry Vaccinium myrtillus L. We quantified fruit set of individuals from the target species along transects established from an apiary outwards. Half the samples were bagged in a nylon mesh to avoid insect pollination. Mixed-effects models were used to test the effect of distance to the apiary on fruit set in non-bagged samples. The results showed a negative significant effect of distance from the apiary on fruit set for hawthorn and bilberry, but no significant effects were detected for wildcherry. This suggests that the use of honeybees under traditional farming practices might be a good instrument to increase fruit production of some native plants. This may have important consequences for wildlife conservation, since fruits, and bilberries in particular, constitute an important feeding resource for endangered species, such as the brown bear Ursus arctos L. or the capercaillie Tetrao urogallus cantabricus L.

Factors for C-Kit Expression in Cardiac Outgrowth Cells and Human Heart Tissue.

PubMed

Matsushita, Satoshi; Minematsu, Kazuo; Yamamoto, Taira; Inaba, Hirotaka; Kuwaki, Kenji; Shimada, Akie; Yokoyama, Yasutaka; Amano, Atsushi

2017-12-12

We determined the factors associated with the expression of c-kit in the heart and the proliferation of c-kit-positive (c-kit pos ) cardiac stem cells among the outgrowth cells cultured from human cardiac explants.Samples of the right atrium (RA), left atrium (LA), and left ventricle obtained from patients during open-heart surgery were processed for cell culture of outgrowth cells and tissue analysis. The total number of growing cells and the population of c-kit pos cells were measured and compared with c-kit expression in native tissues and characteristics of the patients according to the region of the heart.We analyzed 452 samples from 334 patients. Atrial fibrillation (AF) in the patients reduced the number of outgrowth cells from the RA and LA, and aging was a co-factor for the LA. The c-kit pos population from the RA was associated with serum brain natriuretic peptide (BNP). C-kit expression in native tissue was also associated with BNP expression. However, we observed no relationship in expression between outgrowth cells and native tissue. In addition, the RA tissue provided the highest number of c-kit pos cells, and the left ventricle provided the lowest.C-kit was weakly expressed in response to damage. In addition, no correlation between outgrowth cells and native tissue was found for c-kit expression.

Honeybees increase fruit set in native plant species important for wildlife conservation.

PubMed

Cayuela, Luis; Ruiz-Arriaga, Sarah; Ozers, Christian P

2011-11-01

Honeybee colonies are declining in some parts of the world. This may have important consequences for the pollination of crops and native plant species. In Spain, as in other parts of Europe, land abandonment has led to a decrease in the number of non professional beekeepers, which aggravates the problem of honeybee decline as a result of bee diseases In this study, we investigated the effects of honeybees on the pollination of three native plant species in northern Spain, namely wildcherry Prunus avium L., hawthorn Crataegus monogyna Jacq., and bilberry Vaccinium myrtillus L. We quantified fruit set of individuals from the target species along transects established from an apiary outwards. Half the samples were bagged in a nylon mesh to avoid insect pollination. Mixed-effects models were used to test the effect of distance to the apiary on fruit set in non-bagged samples. The results showed a negative significant effect of distance from the apiary on fruit set for hawthorn and bilberry, but no significant effects were detected for wild cherry. This suggests that the use of honeybees under traditional farming practices might be a good instrument to increase fruit production of some native plants. This may have important consequences for wildlife conservation, since fruits, and bilberries in particular, constitute an important feeding resource for endangered species, such as the brown bear Ursus arctos L. or the capercaillie Tetrao urogallus cantabricus L.

Dual-dimensional microscopy: real-time in vivo three-dimensional observation method using high-resolution light-field microscopy and light-field display.

PubMed

Kim, Jonghyun; Moon, Seokil; Jeong, Youngmo; Jang, Changwon; Kim, Youngmin; Lee, Byoungho

2018-06-01

Here, we present dual-dimensional microscopy that captures both two-dimensional (2-D) and light-field images of an in-vivo sample simultaneously, synthesizes an upsampled light-field image in real time, and visualizes it with a computational light-field display system in real time. Compared with conventional light-field microscopy, the additional 2-D image greatly enhances the lateral resolution at the native object plane up to the diffraction limit and compensates for the image degradation at the native object plane. The whole process from capturing to displaying is done in real time with the parallel computation algorithm, which enables the observation of the sample's three-dimensional (3-D) movement and direct interaction with the in-vivo sample. We demonstrate a real-time 3-D interactive experiment with Caenorhabditis elegans. (2018) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE).

Isokinetic air sampler

DOEpatents

Sehmel, George A.

1979-01-01

An isokinetic air sampler includes a filter, a holder for the filter, an air pump for drawing air through the filter at a fixed, predetermined rate, an inlet assembly for the sampler having an inlet opening therein of a size such that isokinetic air sampling is obtained at a particular wind speed, a closure for the inlet opening and means for simultaneously opening the closure and turning on the air pump when the wind speed is such that isokinetic air sampling is obtained. A system incorporating a plurality of such samplers provided with air pumps set to draw air through the filter at the same fixed, predetermined rate and having different inlet opening sizes for use at different wind speeds is included within the ambit of the present invention as is a method of sampling air to measure airborne concentrations of particulate pollutants as a function of wind speed.

Infrequent air contamination with Acinetobacter baumannii of air surrounding known colonized or infected patients.

PubMed

Rock, Clare; Harris, Anthony D; Johnson, J Kristie; Bischoff, Werner E; Thom, Kerri A

2015-07-01

Using a validated air sampling method we found Acinetobacter baumannii in the air surrounding only 1 of 12 patients known to be colonized or infected with A. baumannii. Patients' closed-circuit ventilator status, frequent air exchanges in patient rooms, and short sampling time may have contributed to this low burden.

Natural Gases in Ground Water near Tioga Junction, Tioga County, North-Central Pennsylvania - Occurrence and Use of Isotopes to Determine Origins, 2005

USGS Publications Warehouse

Breen, Kevin J.; Revesz, Kinga; Baldassare, Fred J.; McAuley, Steven D.

2007-01-01

In January 2001, State oil and gas inspectors noted bubbles of natural gas in well water during a complaint investigation near Tioga Junction, Tioga County, north-central Pa. By 2004, the gas occurrence in ground water and accumulation in homes was a safety concern; inspectors were taking action to plug abandoned gas wells and collect gas samples. The origins of the natural-gas problems in ground water were investigated by the U.S. Geological Survey, in cooperation with the Pennsylvania Department of Environmental Protection, in wells throughout an area of about 50 mi2, using compositional and isotopic characteristics of methane and ethane in gas and water wells. This report presents the results for gas-well and water-well samples collected from October 2004 to September 2005. Ground water for rural-domestic supply and other uses near Tioga Junction is from two aquifer systems in and adjacent to the Tioga River valley. An unconsolidated aquifer of outwash sand and gravel of Quaternary age underlies the main river valley and extends into the valleys of tributaries. Fine-grained lacustrine sediments separate shallow and deep water-bearing zones of the outwash. Outwash-aquifer wells are seldom deeper than 100 ft. The river-valley sediments and uplands adjacent to the valley are underlain by a fractured-bedrock aquifer in siliciclastic rocks of Paleozoic age. Most bedrock-aquifer wells produce water from the Lock Haven Formation at depths of 250 ft or less. A review of previous geologic investigations was used to establish the structural framework and identify four plausible origins for natural gas. The Sabinsville Anticline, trending southwest to northeast, is the major structural feature in the Devonian bedrock. The anticline, a structural trap for a reservoir of deep native gas in the Oriskany Sandstone (Devonian) (origin 1) at depths of about 3,900 ft, was explored and tapped by numerous wells from 1930-60. The gas reservoir in the vicinity of Tioga Junction, depleted of native gas, was converted to the Tioga gas-storage field for injection and withdrawal of non-native gases (origin 2). Devonian shale gas (shallow native gas) also has been reported in the area (origin 3). Gas might also originate from microbial degradation of buried organic material in the outwash deposits (origin 4). An inventory of combustible-gas concentrations in headspaces of water samples from 91 wells showed 49 wells had water containing combustible gases at volume fractions of 0.1 percent or more. Well depth was a factor in the observed occurrence of combustible gas for the 62 bedrock wells inventoried. As well-depth range increased from less than 50 ft to 51-150 ft to greater than 151 ft, the percentage of bedrock-aquifer wells with combustible gas increased. Wells with high concentrations of combustible gas occurred in clusters; the largest cluster was near the eastern boundary of the gas-storage field. A subsequent detailed gas-sampling effort focused on 39 water wells with the highest concentrations of combustible gas (12 representing the outwash aquifer and 27 from the bedrock aquifer) and 8 selected gas wells. Three wells producing native gas from the Oriskany Sandstone and five wells (two observation wells and three injection/withdrawal wells) with non-native gas from the gas-storage field were sampled twice. Chemical composition, stable carbon and hydrogen isotopes of methane (13CCH4 and DCH4), and stable carbon isotopes of ethane (13CC2H6) were analyzed. No samples could be collected to document the composition of microbial gas originating in the outwash deposits (outwash or 'drift' gas) or of native natural gas originating solely in Devonian shale at depths shallower than the Oriskany Sandstone, although two of the storage-field observation wells sampled reportedly yielded some Devonian shale gas. Literature values for outwash or 'drift' gas and Devonian shale gases were used to supplement the data collection. Non-native gases fr

Testing the capacity of clothing to act as a vector for non-native seed in protected areas.

PubMed

Mount, Ann; Pickering, Catherine Marina

2009-10-01

Although humans are a major mechanism for short and long distance seed dispersal, there is limited research testing clothing as a vector. The effect of different types of material (sports vs hiking socks), or different items of clothing (boots, socks, laces vs legs) or the same item (socks) worn in different places on seed composition were assessed in Kosciuszko National Park, Australia. Data was analyzed using Repeated Measures ANOVA, independent and paired t-tests, Multi-dimensional Scaling Ordinations and Analysis of Similarity. A total of 24,776 seeds from 70 taxa were collected from the 207 pieces of clothing sampled, with seed identified from 31 native and 19 non-native species. Socks worn off-track collected more native seeds while those worn on roadsides collected more non-native seeds. Sports socks collected a greater diversity of seeds and more native seeds than hiking socks. Boots, uncovered socks and laces collect more seeds than covered socks and laces, resulting in 17% fewer seeds collected when wearing trousers. With seeds from over 179 species (134 recognized weeds) collected on clothing in this, and nine other studies, it is clear that clothing contributes to unintended human mediated seed dispersal, including for many invasive species.

Association of Contextual Factors with Drug Use and Binge Drinking among White, Native American, and Mixed-Race Adolescents in the General Population

PubMed Central

Chen, Hsing-Jung; Balan, Sundari; Price, Rumi Kato

2013-01-01

Large-scale surveys have shown elevated risk for many indicators of substance abuse among Native American and Mixed-Race adolescents compared to other minority groups in the United States. This study examined underlying contextual factors associated with substance abuse among a nationally representative sample of White, Native American, and Mixed-Race adolescents 12-17 years of age, using combined datasets from the National Survey on Drug Use and Health (NSDUH, 2006-2009, N = 46,675, 48.77 % female). Native American adolescents displayed the highest rate of past-month binge drinking and past-year illicit drug use (14.06 % and 30.91%, respectively). Results of a logistic regression that included seven predictors of social bonding, individual views of substance use, and delinquent peer affiliations showed that friendships with delinquent peers and negative views of substance use were associated significantly with both substance abuse outcomes among White and Mixed-Race adolescents and, to a lesser extent, Native American adolescents. The association of parental disapproval with binge drinking was stronger for White than for Native American adolescents. Greater attention to specific measures reflecting racial groups’ contextual and historical differences may be needed to delineate mechanisms that discourage substance abuse among at-risk minority adolescent populations. PMID:22791181

Invasive hybridization in a threatened species is accelerated by climate change

NASA Astrophysics Data System (ADS)

Muhlfeld, Clint C.; Kovach, Ryan P.; Jones, Leslie A.; Al-Chokhachy, Robert; Boyer, Matthew C.; Leary, Robb F.; Lowe, Winsor H.; Luikart, Gordon; Allendorf, Fred W.

2014-07-01

Climate change will decrease worldwide biodiversity through a number of potential pathways, including invasive hybridization (cross-breeding between invasive and native species). How climate warming influences the spread of hybridization and loss of native genomes poses difficult ecological and evolutionary questions with little empirical information to guide conservation management decisions. Here we combine long-term genetic monitoring data with high-resolution climate and stream temperature predictions to evaluate how recent climate warming has influenced the spatio-temporal spread of human-mediated hybridization between threatened native westslope cutthroat trout (Oncorhynchus clarkii lewisi) and non-native rainbow trout (Oncorhynchus mykiss), the world's most widely introduced invasive fish. Despite widespread release of millions of rainbow trout over the past century within the Flathead River system, a large relatively pristine watershed in western North America, historical samples revealed that hybridization was prevalent only in one (source) population. During a subsequent 30-year period of accelerated warming, hybridization spread rapidly and was strongly linked to interactions between climatic drivers--precipitation and temperature--and distance to the source population. Specifically, decreases in spring precipitation and increases in summer stream temperature probably promoted upstream expansion of hybridization throughout the system. This study shows that rapid climate warming can exacerbate interactions between native and non-native species through invasive hybridization, which could spell genomic extinction for many species.

Determination of molecular weight distributions in native and pretreated wood.

PubMed

Leskinen, Timo; Kelley, Stephen S; Argyropoulos, Dimitris S

2015-03-30

The analysis of native wood components by size-exclusion chromatography (SEC) is challenging. Isolation, derivatization and solubilization of wood polymers is required prior to the analysis. The present approach allowed the determination of molecular weight distributions of the carbohydrates and of lignin in native and processed woods, without preparative component isolation steps. For the first time a component selective SEC analysis of sawdust preparations was made possible by the combination of two selective derivatization methods, namely; ionic liquid assisted benzoylation of the carbohydrate fraction and acetobromination of the lignin in acetic acid media. These were optimized for wood samples. The developed method was thus used to examine changes in softwood samples after degradative mechanical and/or chemical treatments, such as ball milling, steam explosion, green liquor pulping, and chemical oxidation with 2,3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ). The methodology can also be applied to examine changes in molecular weight and lignin-carbohydrate linkages that occur during wood-based biorefinery operations, such as pretreatments, and enzymatic saccharification. Copyright © 2014 Elsevier Ltd. All rights reserved.

Defect chemistry and characterization of Hg(1-x)Cd(x)Te

NASA Technical Reports Server (NTRS)

Vydyanath, H. R.

1981-01-01

Undoped mercury cadmium telluride crystals were subjected to high temperature equilibration at temperatures ranging from 400 C to 655 C in various Hg atmospheres. Hall effect and mobility measurements were carried out on the crystals quenched to room temperature subsequent to the high temperature equilibration. The variation of the hole concentration in the cooled crystals at 77 K as a function of the partial pressure of Hg at the equlibration temperatures, together with a comparison of the hole mobility in the undoped samples with that in the copper and phosphorous doped samples yielded a defect model for the undoped crystals, according to which, the undoped crystals are essentially intrinsic at the equilibration temperatures and the native acceptor defects are doubly ionized. Native donor defects appear to be negligible in concentration, implying that the p to n conversion in these alloys is mainly due to residual foreign donor impurities. The thermodynamic constants for the intrinsic excitation process as well as for the incorporation of the doubly ionized native acceptor defects in the undoped crystals were obtained.

Molecular comparison of the sampling efficiency of four types of airborne bacterial samplers.

PubMed

Li, Kejun

2011-11-15

In the present study, indoor and outdoor air samples were collected using four types of air samplers often used for airborne bacterial sampling. These air samplers included two solid impactors (BioStage and RCS), one liquid impinger (BioSampler), and one filter sampler with two kinds of filters (a gelatin and a cellulose acetate filter). The collected air samples were further processed to analyze the diversity and abundance of culturable bacteria and total bacteria through standard culture techniques, denaturing gradient gel electrophoresis (DGGE) fingerprinting and quantitative polymerase chain reaction (qPCR) analysis. The DGGE analysis indicated that the air samples collected using the BioStage and RCS samplers have higher culturable bacterial diversity, whereas the samples collected using the BioSampler and the cellulose acetate filter sampler have higher total bacterial diversity. To obtain more information on the sampled bacteria, some gel bands were excised and sequenced. In terms of sampling efficiency, results from the qPCR tests indicated that the collected total bacterial concentration was higher in samples collected using the BioSampler and the cellulose acetate filter sampler. In conclusion, the sampling bias and efficiency of four kinds of air sampling systems were compared in the present study and the two solid impactors were concluded to be comparatively efficient for culturable bacterial sampling, whereas the liquid impactor and the cellulose acetate filter sampler were efficient for total bacterial sampling. Copyright © 2011 Elsevier B.V. All rights reserved.

Gender differences in resource use and evaluation of attributes of places of resource use by Native Americans and Caucasians from Western Idaho: relevance to risk evaluations.

PubMed

Burger, Joanna; Gochfeld, Michael

2010-01-01

A substantial body of literature deals with exposure differences between men and women, and how men and women perceive environmental risk, but far less attention has been devoted to how men and women use the environment and how they evaluate the features of natural environments. The objective of this study was to examine gender differences in the perceptions of environmental quality and resource use for Native Americans and Caucasians interviewed at an Indian festival in northwestern Idaho. More individuals engaged in fishing than any other consumptive activity, and more people engaged in camping and hiking than other nonconsumptive activities. For both ethnic groups, significantly more men hunted than women, although a higher percentage of Native Americans of both genders hunted than did Caucasians. Although significantly more Caucasian men fished than women (63 vs. 41%), there were no marked differences in fishing for Native Americans. Significantly more Native American women gathered herbs (57%) compared to men (37%). There were no significant gender differences in nonconsumptive activities (camping, hiking, biking, bird watching, or picnicking). For those who engaged in consumptive and nonconsumptive activities, however, there were few gender differences in the frequency of these activities, except for fishing, hunting, and crabbing by Caucasians (men had higher rates) and collecting berries and herbs for Native Americans (women had higher rates). When asked to evaluate environmental characteristics or attributes on a scale of 1 (less important) to 5 (very important), unpolluted water, clean air, no visible smog, unpolluted groundwater, and appears unspoiled were rated the highest. There were few significant gender differences in these evaluations for Native Americans, but there were significant gender differences for Caucasians: Women rated most features higher than did men (except for natural tidal flow). These data indicate a need to evaluate not only consumption rate differences between men and women, but also nonconsumptive activities, as well as resource values and perceptions, when managing environments and determining potential risk from exposure.

Elevated carbon dioxide and warming impact silicon and phenolic-based defences differently in native and exotic grasses.

PubMed

Johnson, Scott N; Hartley, Susan E

2017-11-03

Global climate change may increase invasions of exotic plant species by directly promoting the success of invasive/exotic species or by reducing the competitive abilities of native species. Changes in plant chemistry, leading to altered susceptibility to stress, could mediate these effects. Grasses are hyper-accumulators of silicon, which play a crucial function in the alleviation of diverse biotic and abiotic stresses. It is unknown how predicted increases in atmospheric carbon dioxide (CO 2 ) and air temperature affect silicon accumulation in grasses, especially in relation to primary and secondary metabolites. We tested how elevated CO 2 (eCO 2 ) (+240 ppm) and temperature (eT) (+4°C) affected chemical composition (silicon, phenolics, carbon and nitrogen) and plant growth in eight grass species, either native or exotic to Australia. eCO 2 increased phenolic concentrations by 11%, but caused silicon accumulation to decline by 12%. Moreover, declines in silicon occurred mainly in native species (-19%), but remained largely unchanged in exotic species. Conversely, eT increased silicon accumulation in native species (+19%) but decreased silicon accumulation in exotic species (-10%). Silicon and phenolic concentrations were negatively correlated with each other, potentially reflecting a defensive trade-off. Moreover, both defences were negatively correlated with plant mass, compatible with a growth-defence trade-off. Grasses responded in a species-specific manner, suggesting that the relative susceptibility of different species may differ under future climates compared to current species rankings of resource quality. For example, the native Microlaena stipoides was less well defended under eCO 2 in terms of both phenolics and silicon, and thus could suffer greater vulnerability to herbivores. To our knowledge, this is the first demonstration of the impacts of eCO 2 and eT on silicon accumulation in grasses. We speculate that the greater plasticity in silicon uptake shown by Australian native grasses may be partly a consequence of evolving in a low nutrient and seasonally arid environment. © 2017 John Wiley & Sons Ltd.

Air Sampling Logbook of Region 4 Yellow Bluff Air Study Wilcox County, Alabama SESD Project Identification Number:11-0068

EPA Pesticide Factsheets

Contains the Air Sampling Logbook between 1-24-2011 thru 1-28-2011 from the Region 4 Yellow Bluff Air Study Wilcox County, Alabama SESD Project Identification Number:11-0068 November 2010-December 2010

Air Sample Conditioner Helps the Waste Treatment Plant Meet Emissions Standards

DOE Office of Scientific and Technical Information (OSTI.GOV)

Glissmeyer, John A.; Flaherty, Julia E.; Pekour, Mikhail S.

2014-12-02

The air in three of the Hanford Site Waste Treatment and Immobilization Plant (WTP) melter off-gas discharge stacks will be hot and humid after passing through the train of emission abatement equipment. The off-gas temperature and humidity levels will be incompatible with the airborne emissions monitoring equipment required for this type of stack. To facilitate sampling from these facilities, an air sample conditioner system will be installed to introduce cool, dry air into the sample stream to reduce the temperature and dew point. This will avoid thermal damage to the instrumentation and problematic condensation. The complete sample transport system mustmore » also deliver at least 50% of the particles in the sample airstream to the sample collection and on-line analysis equipment. The primary components of the sample conditioning system were tested in a laboratory setting. The sample conditioner itself is based on a commercially-available porous tube filter design. It consists of a porous sintered metal tube inside a coaxial metal jacket. The hot gas sample stream passes axially through the porous tube, and the dry, cool air is injected into the jacket and through the porous wall of the inner tube, creating an effective sample diluter. The dilution and sample air mix along the entire length of the porous tube, thereby simultaneously reducing the dew point and temperature of the mixed sample stream. Furthermore, because the dilution air enters through the porous tube wall, the sample stream does not come in contact with the porous wall and particle deposition is reduced in this part of the sampling system. Tests were performed with an environmental chamber to supply air with the temperature and humidity needed to simulate the off-gas conditions. Air from the chamber was passed through the conditioning system to test its ability to reduce the temperature and dew point of the sample stream. To measure particle deposition, oil droplets in the range of 9 to 11 micrometer aerodynamic diameter were injected into the environmental chamber and drawn through the conditioning system, which included a filter to capture droplets that passed through the conditioner. The droplets were tagged with a fluorescent dye which allowed quantification of droplet deposition on each component of the system. The tests demonstrated the required reductions in temperature and moisture, with no condensation forming when heat tracing was added on the upstream end of the sample conditioner. Additionally, tests indicated that the system, operating at several flow rates and in both vertical and horizontal orientations, delivers nearly all of the sampled particles for analysis. Typical aerosol penetration values were between 98 and 99%. PNNL, Bechtel National Inc., and the instrument vendor are working to implement the sample conditioner into the air monitoring systems used for the melter off-gas exhaust streams. Similar technology may be useful for processes in other facilities with air exhaust streams with elevated temperature and/or humidity.« less

Beverage consumption in an Alaska Native village: a mixed-methods study of behaviour, attitudes and access.

PubMed

Elwan, Deena; de Schweinitz, Peter; Wojcicki, Janet M

2016-01-01

American Indians/Alaska Natives (AI/AN) have the highest prevalence of obesity for any racial/ethnic group. Previous studies examining risk factors for obesity have identified excessive sugar-sweetened beverage (SSB) and inadequate water consumption as major risk factors for this population group. The historical scarcity of water in rural Alaska may explain consumption patterns including reliance on SSBs and other packaged drinks. Our study was designed to assess SSB, water and other beverage consumption and attitudes towards consumption in Alaska Native children and adults residing in rural Alaska. During summer 2014, 2 focus groups were conducted employing community members in a small rural village more than 200 air miles west of Fairbanks, Alaska. Interviews were completed with shop owners, Early Head Start and Head Start program instructors (n=7). SSB and total beverage intakes were measured using a modified version of the BEVQ-15, (n=69). High rates of SSB consumption (defined as sweetened juice beverages, soda, sweet tea, energy drink or sports drinks) and low rates of water consumption were reported for all age groups in the village. All adolescents and 81% of children reported drinking SSBs at least once per week in the last month, and 48% of adolescents and 29% of younger children reported daily consumption. Fifty-two per cent of adults reported consuming SSBs at least once per week and 20% reported daily consumption. Twenty-five per cent of adolescents reported never drinking water in the past month, and 19% of younger children and 21% of adults did not consume water daily. Alaska Native children and adults living in the Interior Alaska consume high amounts of SSBs including energy drinks and insufficient amounts of water. Interventions targeting beverage consumption are urgently needed for the Alaska Native population in rural Alaska.

Persistence of Coffea arabica and its relationship with the structure, species diversity and composition of a secondary forest in Brazil

PubMed Central

Prado-Junior, Jamir; de Oliveira-Neto, Norberto Emídio; Santana, Lucas Dezidério; do Vale, Vagner Santiago; Jacobson, Tamiel Baiocchi; de Oliveira, Paulo Eugênio Alves Macedo; Carvalho, Fabrício Alvim

2018-01-01

Understanding the relationships between Coffea arabica L. and the native tree community of secondary forests regrowing after the abandonment of coffee plantations is important because, as a non-native species in the Neotropics, coffee can outcompete native species, reducing diversity and forests ecosystem services. We aimed to answer three questions: 1) Does coffee regeneration in secondary forests differ between shaded and unshaded abandoned plantations?; 2) How is coffee basal area related to structural attributes, species diversity and composition of the native community?; and 3) Do the relationships between coffee and native community differ between tree and sapling components? We sampled the tree and sapling components in a seasonal tropical dry forest that were previously used as shaded and unshaded coffee plantations. Coffee was the most important species in the sapling component of shaded systems, but was almost absent in unshaded ones. Coffee basal area was negatively related with the native density and absolute species richness of the sapling component; and was negatively related with tree density, and positively related with the percentage of pioneer individuals of the native tree component. Our results indicate that coffee persists in secondary forest communities even after more than 70 years of shaded-coffee plantations were abandoned, potentially reducing density and diversity of native species. Despite limitations, which hinder more general conclusions on coffee invasiveness in Brazilian secondary tropical forests, our results indicate that coffee is a strong competitor in the studied secondary forests and provide important insights for future research on this topic. PMID:29538468

Setting limits: Using air pollution thresholds to protect and restore U.S. ecosystems

USGS Publications Warehouse

Fenn, M.E.; Lambert, K.F.; Blett, T.F.; Burns, Douglas A.; Pardo, L.H.; Lovett, Gary M.; Haeuber, R. A.; Evers, D.C.; Driscoll, C.T.; Jeffries, D.S.

2011-01-01

More than four decades of research provide unequivocal evidence that sulfur, nitrogen, and mercury pollution have altered, and will continue to alter, our nation's lands and waters. The emission and deposition of air pollutants harm native plants and animals, degrade water quality, affect forest productivity, and are damaging to human health. Many air quality policies limit emissions at the source but these control measures do not always consider ecosystem impacts. Air pollution thresholds at which ecological effects are observed, such as critical loads, are effective tools for assessing the impacts of air pollution on essential ecosystem services and for informing public policy. U.S. ecosystems can be more effectively protected and restored by using a combination of emissions-based approaches and science-based thresholds of ecosystem damage. Based on the results of a comprehensive review of air pollution thresholds, we conclude: ??? Ecosystem services such as air and water purification, decomposition and detoxification of waste materials, climate regulation, regeneration of soil fertility, production and biodiversity maintenance, as well as crop, timber and fish supplies are impacted by deposition of nitrogen, sulfur, mercury and other pollutants. The consequences of these changes may be difficult or impossible to reverse as impacts cascade throughout affected ecosystems. ??? The effects of too much nitrogen are common across the U.S. and include altered plant and lichen communities, enhanced growth of invasive species, eutrophication and acidification of lands and waters, and habitat deterioration for native species, including endangered species. ??? Lake, stream and soil acidification is widespread across the eastern United States. Up to 65% of lakes within sensitive areas receive acid deposition that exceeds critical loads. ??? Mercury contamination adversely affects fish in many inland and coastal waters. Fish consumption advisories for mercury exist in all 50 states and on many tribal lands. High concentrations of mercury in wildlife are also widespread and have multiple adverse effects. ??? Air quality programs, such as those stemming from the 1990 Clean Air Act Amendments, have helped decrease air pollution even as population and energy demand have increased. Yet, they do not adequately protect ecosystems from long-term damage. Moreover they do not address ammonia emissions. ??? A stronger ecosystem basis for air pollutant policies could be established through adoption of science-based thresholds. Existing monitoring programs track vital information needed to measure the response to policies, and could be expanded to include appropriate chemical and biological indicators for terrestrial and aquatic ecosystems and establishment of a national ecosystem monitoring network for mercury. The development and use of air pollution thresholds for ecosystem protection and management is increasing in the United States, yet threshold approaches remain underutilized. Ecological thresholds for air pollution, such as critical loads for nitrogen and sulfur deposition, are not currently included in the formal regulatory process for emissions controls in the United States, although they are now considered in local management decisions by the National Park Service and U.S. Forest Service. Ecological thresholds offer a scientifically sound approach to protecting and restoring U.S. ecosystems and an important tool for natural resource management and policy. ?? The Ecological Society of America.

Selenium Speciation and Management in Wet FGD Systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Searcy, K; Richardson, M; Blythe, G

2012-02-29

This report discusses results from bench- and pilot-scale simulation tests conducted to determine the factors that impact selenium speciation and phase partitioning in wet FGD systems. The selenium chemistry in wet FGD systems is highly complex and not completely understood, thus extrapolation and scale-up of these results may be uncertain. Control of operating parameters and application of scrubber additives have successfully demonstrated the avoidance or decrease of selenite oxidation at the bench and pilot scale. Ongoing efforts to improve sample handling methods for selenium speciation measurements are also discussed. Bench-scale scrubber tests explored the impacts of oxidation air rate, tracemore » metals, scrubber additives, and natural limestone on selenium speciation in synthetic and field-generated full-scale FGD liquors. The presence and concentration of redox-active chemical species as well as the oxidation air rate contribute to the oxidation-reduction potential (ORP) conditions in FGD scrubbers. Selenite oxidation to the undesirable selenate form increases with increasing ORP conditions, and decreases with decreasing ORP conditions. Solid-phase manganese [Mn(IV)] appeared to be the significant metal impacting the oxidation of selenite to selenate. Scrubber additives were tested for their ability to inhibit selenite oxidation. Although dibasic acid and other scrubber additives showed promise in early clear liquor (sodium based and without calcium solids) bench-scale tests, these additives did not show strong inhibition of selenite oxidation in tests with higher manganese concentrations and with slurries from full-scale wet FGD systems. In bench-tests with field liquors, addition of ferric chloride at a 250:1 iron-to-selenium mass ratio sorbed all incoming selenite to the solid phase, although addition of ferric salts had no impact on native selenate that already existed in the field slurry liquor sample. As ORP increases, selenite may oxidize to selenate more rapidly than it sorbs to ferric solids. Though it was not possible to demonstrate a decrease in selenium concentrations to levels below the project'ale testing were evident at the pilot scale. Specifically, reducing oxidation air rate and ORP tends to either retain selenium as selenite in the liquor or shift selenium phase partitioning to the solid phase. Oxidation air flow rate control may be one option for managing selenium behavior in FGD scrubbers. Units that cycle load widely may find it more difficult to impact ORP conditions with oxidation air flow rate control alone. Because decreasing oxidation air rates to the reaction tank showed that all new selenium reported to the solids, the addition of ferric chloride to the pilot scrubber could not show further improvements in selenium behavior. Ferric chloride addition did shift mercury to the slurry solids, specifically to the fine particles. Several competing pathways may govern the reporting of selenium to the slurry solids: co-precipitation with gypsum into the bulk solids and sorption or co-precipitation with iron into the fine particles. Simultaneous measurement of selenium and mercury behavior suggests a holistic management strategy is best to optimize the fate of both of these elements in FGD waters. Work conducted under this project evaluated sample handling and analytical methods for selenium speciation in FGD waters. Three analytical techniques and several preservation methods were employed. Measurements of selenium speciation over time indicated that for accurate selenium speciation, it is best to conduct measurements on unpreserved, filtered samples as soon after sampling as possible. The capital and operating costs for two selenium management strategies were considered: ferric chloride addition and oxidation air flow rate control. For ferric chloride addition, as might be expected the reagent makeup costs dominate the overall costs, and range from 0.22 to 0.29 mills/kWh. For oxidation air flow rate control, a cursory comparison of capital costs and turndown capabilities for multi-stage and single-stage centrifugal blowers and several flow control methods was completed. For greenfield systems, changing the selection of blower type and flow control method may have payback periods of 4 to 5 years or more if based on energy savings alone. However, the benefits to managing redox chemistry in the scrubber could far outweigh the savings in electricity costs under some circumstances.« less

Phytochemicals in fruits of Hawaiian wild cranberry relatives

USDA-ARS?s Scientific Manuscript database

The phytochemical profile of the Hawaiian Native Vaccinium (family Ericaceae) has not been thoroughly described. Our objective was to evaluate the chemical composition of diverse wild and cultivated samples of the low-growing ‘ohelo, V. reticulatum Smith. In 2009, ripe fruit samples were collected f...

Native microflora in fresh-cut processing plants and their potentials of biofilm formation

USDA-ARS?s Scientific Manuscript database

Representative food contact and non-food contact surfaces in two mid-sized fresh cut processing facilities were sampled for microbiological analyses post routine daily sanitization. Mesophilic and psychrotrophic bacteria on the sampled surfaces were isolated by plating on non-selective bacterial med...

Physical Activity among Rural Older Adults with Diabetes

ERIC Educational Resources Information Center

Arcury, Thomas A.; Snively, Beverly M.; Bell, Ronny A.; Smith, Shannon L.; Stafford, Jeanette M.; Wetmore-Arkader, Lindsay K.; Quandt, Sara A.

2006-01-01

Purpose: This analysis describes physical activity levels and factors associated with physical activity in an ethnically diverse (African American, Native American, white) sample of rural older adults with diabetes. Method: Data were collected using a population-based, cross-sectional stratified random sample survey of 701 community-dwelling…