Post-construction monitoring of a Core-Loc™ breakwater using tripod-based LiDAR

USGS Publications Warehouse

Podoski, Jessica H.; Bawden, Gerald W.; Bond, Sandra; Smith, Thomas D.; Foster, James

2010-01-01

The goal of the technology application described herein is to determine whether breakwater monitoring data collected using Tripod (or Terrestrial) Light Detection and Ranging (T-LiDAR) can give insight into processes such as how Core-Loc™ concrete armour units nest following construction, and in turn how settlement affects armour layer stability, concrete cap performance, and armour unit breakage.  A further objective is that this information can then be incorporated into the design of future projects using concrete armour units.  The results of this application of T-LiDAR, including the challenges encountered and the conclusions drawn regarding initial concrete armour unit movement will be presented in this paper.

Sediment data collected in 2014 and 2015 from around Breton and Gosier Islands, Breton National Wildlife Refuge, Louisiana

USGS Publications Warehouse

Bernier, Julie C.; Kelso, Kyle W.; Tuten, Thomas M.; Stalk, Chelsea A.; Flocks, James G.

2017-03-08

Breton Island, located at the southern end of the Chandeleur Islands, supports one of Louisiana’s largest historical brown pelican (Pelecanus occidentalis) nesting colonies. Although the brown pelican was delisted as an endangered species in 2009, nesting areas are threatened by continued land loss and are extremely vulnerable to storm impacts. The U.S. Fish and Wildlife Service proposed to restore Breton Island to pre-Hurricane Katrina conditions through rebuilding the shoreface, dune, and back-barrier marsh environments. Prior to restoration, scientists from the U.S. Geological Survey’s (USGS) St. Petersburg Coastal and Marine Science Center Geologic and Morphologic Evolution of Coastal Margins project collected high-resolution geophysical (topography, bathymetry, and sub-bottom profiles) and sedimentologic data from around Breton Island to characterize the geologic framework of the island platform, nearshore, and shelf environments. These data will be used to characterize the geologic framework around Breton Island, identify potential borrow areas for restoration efforts, quantify seafloor change, and provide information for sediment transport and morphologic change models to assess island response to restoration and natural processes.This report, along with the accompanying USGS data release, serves as an archive of sediment data from vibracores, push cores, and submerged grab samples collected from around Breton and Gosier Islands, Louisiana, during two surveys conducted in July 2014 and January 2015 (USGS Field Activity Numbers 2014–314–FA and 2014–336–FA, respectively). Sedimentologic and stratigraphic metrics (for example, sediment texture or unit thicknesses) derived from these data can be used to ground-truth the geophysical data and characterize potential sand resources or can be incorporated into sediment transport or morphologic change models. Data products, including sample location tables, descriptive core logs, core photographs and x-radiographs, results of sediment grain-size analyses, and geographic information system data files with accompanying formal Federal Geographic Data Committee metadata can be downloaded from the accompanying data release.

Historic distribution of Common Loons in Wisconsin in relation to changes in lake characteristics and surrounding land use

USGS Publications Warehouse

Kenow, Kevin P.; Garrison, Paul J.; Fox, Timothy J.; Meyer, Michael W.

2013-01-01

A study was conducted to evaluate changes in water quality and land-use change associated with lakes that are south of the current breeding range of Common Loons in Wisconsin but that historically supported breeding loons. Museum collection records and published accounts were examined to identify lakes in southern Wisconsin with a former history of loon nesting activity. Historical and recent water quality data were obtained from state and USEPA databases for the former loon nesting lakes that were identified and paleolimnological data were acquired for these lakes from sediment cores used to infer historical total phosphorus concentrations from diatom assemblages. U.S. General Land Office notes and maps from the original land survey conducted in Wisconsin during 1832-1866 and the National Land Cover Database 2006 were utilized to assess land use changes that occurred within the drainage basins of former loon nesting lakes. Our results indicate that the landscape of southern Wisconsin has changed dramatically since Common Loons last nested in the region. A number of factors have likely contributed to the decreased appeal of southern Wisconsin lakes to breeding Common Loons, including changes to water quality, altered trophic status resulting from nutrient enrichment, and reductions in suitable nesting habitat stemming from shoreline development and altered water levels. Increased nutrient and sediment inputs from agricultural and developed areas likely contributed to a reduction in habitat quality.

Toroidal converter core

NASA Technical Reports Server (NTRS)

Mclyman, W. T.

1977-01-01

Improved approach consists of cut and uncut cores nested in concentric configuration. Cores are made by winding steel ribbon on mandrel and impregnating with epoxy to bond layers together. Gap is made by cutting across wound and bonded core. Rough ends are ground or lapped.

Multiprocessor switch with selective pairing

DOEpatents

Gara, Alan; Gschwind, Michael K; Salapura, Valentina

2014-03-11

System, method and computer program product for a multiprocessing system to offer selective pairing of processor cores for increased processing reliability. A selective pairing facility is provided that selectively connects, i.e., pairs, multiple microprocessor or processor cores to provide one highly reliable thread (or thread group). Each paired microprocessor or processor cores that provide one highly reliable thread for high-reliability connect with a system components such as a memory "nest" (or memory hierarchy), an optional system controller, and optional interrupt controller, optional I/O or peripheral devices, etc. The memory nest is attached to a selective pairing facility via a switch or a bus

Effect of Interactions between Harvester Ants on Forager Decisions

PubMed Central

Davidson, Jacob D.; Arauco-Aliaga, Roxana P.; Crow, Sam; Gordon, Deborah M.; Goldman, Mark S.

2017-01-01

Harvester ant colonies adjust their foraging activity to day-to-day changes in food availability and hour-to-hour changes in environmental conditions. This collective behavior is regulated through interactions, in the form of brief antennal contacts, between outgoing foragers and returning foragers with food. Here we consider how an ant, waiting in the entrance chamber just inside the nest entrance, uses its accumulated experience of interactions to decide whether to leave the nest to forage. Using videos of field observations, we tracked the interactions and foraging decisions of ants in the entrance chamber. Outgoing foragers tended to interact with returning foragers at higher rates than ants that returned to the deeper nest and did not forage. To provide a mechanistic framework for interpreting these results, we develop a decision model in which ants make decisions based upon a noisy accumulation of individual contacts with returning foragers. The model can reproduce core trends and realistic distributions for individual ant interaction statistics, and suggests possible mechanisms by which foraging activity may be regulated at an individual ant level. PMID:28758093

High-temperature, high-pressure bonding of nested tubular metallic components

DOEpatents

Quinby, T.C.

A tool is described for effecting high-temperature, high-compression bonding between the confronting faces of nested, tubular, metallic components. In a typical application, the tool is used to produce tubular target assemblies for irradiation in nuclear reactors or particle accelerators. The target assembly comprising a uranum foil and an aluninum-alloy substrate. The tool is composed of graphite. It comprises a tubular restraining member in which a mechanically expandable tubular core is mounted to form an annulus. The components to be bonded are mounted in nested relation in the annulus. The expandable core is formed of individually movable, axially elongated segments whose outer faces cooperatively define a cylindrical pressing surface and whose inner faces cooperatively define two opposed, inwardly tapered, axial bores. Tapered rams extend into the bores. The loaded tool is mounted in a conventional hot-press provided with evacuation means, heaters for maintaining its interior at bonding temperature, and hydraulic cylinders for maintaining a selected inwardly directed pressure on the tapered rams. With the hot-press evacuated and the loaded tool at the desired temperature, the cylinders are actuated to apply the selected pressure to the rams. The rams in turn expand the segmented core to maintain the nested components in compression against the restraining member. These conditions are maintained until the confronting faces of the nested components are joined in a continuous, uniform bond characterized by high thermal conductivity.

Nest-site selection, reproductive ecology and shifts within core-use areas of Black-necked Cranes at the northern limit of the Tibetan Plateau

PubMed Central

An, Bei; Shu, Meilin

2017-01-01

We investigated population dynamics, breeding pairs, breeding habitat selection, nest density, distance between neighboring nests, nest survival, reproductive success, and recruitment rate for Black-necked Cranes (BNC, Grus nigricollis) during 2013–2015 in Yanchiwan National Nature Reserve (YCW), Gansu, China. Numbers of BNC and breeding pairs remained relatively stable at around 140 individuals and 40 pairs. Recruitment rates ranged from 15.7% to 25.8%. The average nest distance was 718.66 ± 430.50 m (2013), 1064.51 ± 323.99 m (2014) and 534.99 ± 195.45 m (2015). Average nest survival rate, hatching success, and breeding success of all 29 nests were 65.56 ± 5.09%, 57.04 ± 6.12% and 32.78% ± 2.55. Water depth, water body area, and distance to land were positively related to nest survival, while disturbance level showed a negative relationship. However, nest site selection of BNC was determined by habitat type, disturbance and water depth. BNC often foraged in mudflats and freshwater marsh but seldom foraged in saline-alkali wet meadows due to food density and quantity in April, the month when BNC choose nest sites. Conservation strategies based on habitats should consider ecological factors that may not be well predicted by nest site selection. Shifts within core-use areas from satellite tracking of BNC demonstrated that maintaining populations demands that conservation areas are large enough to permit breeding BNC changes in space use. Our results are important for conservation management and provide quantitative reproductive data for this species. PMID:28168110

Nest-site selection, reproductive ecology and shifts within core-use areas of Black-necked Cranes at the northern limit of the Tibetan Plateau.

PubMed

Zhang, Lixun; An, Bei; Shu, Meilin; Yang, Xiaojun

2017-01-01

We investigated population dynamics, breeding pairs, breeding habitat selection, nest density, distance between neighboring nests, nest survival, reproductive success, and recruitment rate for Black-necked Cranes (BNC, Grus nigricollis ) during 2013-2015 in Yanchiwan National Nature Reserve (YCW), Gansu, China. Numbers of BNC and breeding pairs remained relatively stable at around 140 individuals and 40 pairs. Recruitment rates ranged from 15.7% to 25.8%. The average nest distance was 718.66 ± 430.50 m (2013), 1064.51 ± 323.99 m (2014) and 534.99 ± 195.45 m (2015). Average nest survival rate, hatching success, and breeding success of all 29 nests were 65.56 ± 5.09%, 57.04 ± 6.12% and 32.78% ± 2.55. Water depth, water body area, and distance to land were positively related to nest survival, while disturbance level showed a negative relationship. However, nest site selection of BNC was determined by habitat type, disturbance and water depth. BNC often foraged in mudflats and freshwater marsh but seldom foraged in saline-alkali wet meadows due to food density and quantity in April, the month when BNC choose nest sites. Conservation strategies based on habitats should consider ecological factors that may not be well predicted by nest site selection. Shifts within core-use areas from satellite tracking of BNC demonstrated that maintaining populations demands that conservation areas are large enough to permit breeding BNC changes in space use. Our results are important for conservation management and provide quantitative reproductive data for this species.

Variability in individual assessment behaviour and its implications for collective decision-making.

PubMed

O'Shea-Wheller, Thomas A; Masuda, Naoki; Sendova-Franks, Ana B; Franks, Nigel R

2017-02-08

Self-organized systems of collective behaviour have been demonstrated in a number of group-living organisms. There is, however, less research relating to how variation in individual assessments may facilitate group decision-making. Here, we investigate this using the decentralized system of collective nest choice behaviour employed by the ant Temnothorax albipennis, combining experimental results with computational modelling. In experiments, isolated workers of this species were allowed to investigate new nest sites of differing quality, and it was found that for any given nest quality, there was wide variation among individuals in the durations that they spent within each nest site. Additionally, individual workers were consistent in spending more time in nest sites of higher quality, and less time in those of lower quality. Hence, the time spent in a new nest site must have included an assessment of nest quality. As nest site visit durations (henceforth termed assessment durations) are linked to recruitment, it is possible that the variability we observed may influence the collective decision-making process of colonies. Thus, we explored this further using a computational model of nest site selection, and found that heterogeneous nest assessments conferred a number of potential benefits. Furthermore, our experiments showed that nest quality assessments were flexible, being influenced by experience of prior options. Our findings help to elucidate the potential mechanisms underlying group behaviour, and highlight the importance of heterogeneity among individuals, rather than precise calibration, in shaping collective decision-making. © 2017 The Author(s).

An object-oriented approach to nested data parallelism

NASA Technical Reports Server (NTRS)

Sheffler, Thomas J.; Chatterjee, Siddhartha

1994-01-01

This paper describes an implementation technique for integrating nested data parallelism into an object-oriented language. Data-parallel programming employs sets of data called 'collections' and expresses parallelism as operations performed over the elements of a collection. When the elements of a collection are also collections, then there is the possibility for 'nested data parallelism.' Few current programming languages support nested data parallelism however. In an object-oriented framework, a collection is a single object. Its type defines the parallel operations that may be applied to it. Our goal is to design and build an object-oriented data-parallel programming environment supporting nested data parallelism. Our initial approach is built upon three fundamental additions to C++. We add new parallel base types by implementing them as classes, and add a new parallel collection type called a 'vector' that is implemented as a template. Only one new language feature is introduced: the 'foreach' construct, which is the basis for exploiting elementwise parallelism over collections. The strength of the method lies in the compilation strategy, which translates nested data-parallel C++ into ordinary C++. Extracting the potential parallelism in nested 'foreach' constructs is called 'flattening' nested parallelism. We show how to flatten 'foreach' constructs using a simple program transformation. Our prototype system produces vector code which has been successfully run on workstations, a CM-2, and a CM-5.

Efficient optical probes for fast surface velocimetry: multiple frequency issues for Fabry and VISAR methods

NASA Astrophysics Data System (ADS)

Goosman, David R.; Avara, George R.; Perry, Stephen J.

2001-04-01

We have in the past used several types of optical probe lenses for delivering and collecting laser light to an experiment for laser velocimetry. When the test surface was in focus, however, the collected light would fill mostly the laser fiber rather than the collection fiber(s). We have designed, developed and used for 8 years nested-lens probe assemblies that solve this problem. Our first version used a commercial AR-coated glass achromat, which we cored to remove the inner fourth of its area. The core was then reinserted with its optical center offset from that of annulus by an amount slightly less than the separation between the laser and collector fibers. The laser and collector fibers are placed in contact with each other behind the lens and have NA values of 0.11 and 0.22, respectively. Because most of the collected light now focused on the collection fiber, this system was far superior to the single lens systems, but was laborious. For the last five years we used injection-molded acrylic aspheric nested lenses, which are inexpensive in quantity and require little labor to install into a probe. Only an azimuthal rotation and positioning of the fiber plane are needed to incorporate the plastic lens into a probe. Special ray-trace codes were written and used to design the lens, and many iterations by the molder were required to develop the injection processing parameters to produce a good lens, since it was thick for its diameter. These probes have real light collection efficiencies of 75% of theoretical, work well over a wide range of distances, with collection depths of field matching theory. The lenses can take 100 watts of pulsed power many times without damage, since the lens is designed so that reflections from the lens surface do not focus within the lens. The collection fiber size is designed to work with our manybeam velocimeter facility reported in a previous Congress, where the collection NA times collection fiber size exceeds the acceptance of the velocimeter. The Doppler-shifted light enters the collection fiber with angles between 0.11 and 0.2, with little light in the 0 to 0.11 NA region. However, the manybeam velocimeter uses just the light in the 0 to 0.11 NA range, except when we link two analyzer tables together. A slight amount of mode scrambling of the Doppler shifted light converts the light into a uniformly filled NA equals 0.2 angular range before entering the velocimeter analyzer table. We have expended seven hundred plastic nested lenses in various experiments. The most recent version of the fiber cable assembly will be shown. Six situations will be discussed where multiple reflected frequencies were observed in experiments, illustrating an advantage of the Fabry-Perot vs. the VISAR method.

Predator selection of prairie landscape features and its relation to duck nest success

USGS Publications Warehouse

Phillips, M.L.; Clark, W.R.; Sovada, M.A.; Horn, D.J.; Koford, Rolf R.; Greenwood, R.J.

2003-01-01

Mammalian predation is a major cause of mortality for breeding waterfowl in the U.S. Northern Great Plains, and yet we know little about the selection of prairie habitats by predators or how this influences nest success in grassland nesting cover. We selected 2 41.4-km2 study areas in both 1996 and 1997 in North Dakota, USA, with contrasting compositions of perennial grassland. A study area contained either 15-20% perennial grassland (Low Grassland Composition [LGC]) or 45-55% perennial grassland (High Grassland Composition [HGC]). We used radiotelemetry to investigate the selection of 9 landscape cover types by red fox (Vulpes vulpes) and striped skunk (Mephitis mephitis), while simultaneously recording duck nest success within planted cover. The cover types included the edge and core areas of planted cover, wetland edges within planted cover or surrounded by cropland, pastureland, hayland, cropland, roads, and miscellaneous cover types. Striped skunks selected wetland edges surrounded by agriculture over all other cover types in LGC landscapes (P-values for all pairwise comparisons were <0.05). Striped skunks also selected wetland edges surrounded by agriculture over all other cover types in HGC landscapes (P < 0.05), except for wetland edges within planted cover (P = 0.12). Red foxes selected the edge and core areas of planted cover, as well as wetland edges within planted cover in LGC landscapes (i.e., they were attracted to the more isolated patches of planted cover). However, in HGC landscapes, red foxes did not select interior areas of planted cover (i.e., core areas of planted cover and wetland edges in planted cover) as frequently as edges of planted cover (P < 0.05). Red foxes selected core areas of planted cover more frequently in LGC than in HGC landscapes (P < 0.05) and selected pastureland more frequently in HGC than in LGC landscapes (P < 0.05). Furthermore, red foxes selected the isolated patches of planted cover more than pastureland in LGC landscapes (P < 0.05). Duck nest success was greater in HGC landscapes than in LGC landscapes for planted-cover core (P < 0.0001), planted-cover edge (P < 0.001) and planted cover-wetland edge (P < 0.001). Both the increased amount of planted-cover core area and the increased pastureland selection in HGC landscapes may have diluted predator foraging efficiency in the interior areas of planted cover and contributed to higher nest success in HGC landscapes. Our observations of predator cover-type selection not only support the restoration and management of large blocks of grassland but also indicate the influence of alternative cover types for mitigating nest predation in the Prairie Pothole Region.

Different bees, different needs: how nest-site requirements have shaped the decision-making processes in homeless honeybees (Apis spp.).

PubMed

Beekman, Madeleine; Oldroyd, Benjamin P

2018-05-19

During reproductive swarming, a honeybee swarm needs to decide on a new nest site and then move to the chosen site collectively. Most studies of swarming and nest-site selection are based on one species, Apis mellifera Natural colonies of A. mellifera live in tree cavities. The quality of the cavity is critical to the survival of a swarm. Other honeybee species nest in the open, and have less strict nest-site requirements, such as the open-nesting dwarf honeybee Apis florea Apis florea builds a nest comprised of a single comb suspended from a twig. For a cavity-nesting species, there is only a limited number of potential nest sites that can be located by a swarm, because suitable sites are scarce. By contrast, for an open-nesting species, there is an abundance of equally suitable twigs. While the decision-making process of cavity-nesting bees is geared towards selecting the best site possible, open-nesting species need to coordinate collective movement towards areas with potential nest sites. Here, we argue that the nest-site selection processes of A. florea and A. mellifera have been shaped by each species' specific nest-site requirements. Both species use the same behavioural algorithm, tuned to allow each species to solve their species-specific problem.This article is part of the theme issue 'Collective movement ecology'. © 2018 The Author(s).

High-temperature, high-pressure bonding of nested tubular metallic components

DOEpatents

Quinby, Thomas C.

1980-01-01

This invention is a tool for effecting high-temperature, high-compression bonding between the confronting faces of nested, tubular, metallic components. In a typical application, the tool is used to produce tubular target assemblies for irradiation in nuclear reactors or particle accelerators, the target assembly comprising a uranium foil and an aluminum-alloy substrate. The tool preferably is composed throughout of graphite. It comprises a tubular restraining member in which a mechanically expandable tubular core is mounted to form an annulus with the member. The components to be bonded are mounted in nested relation in the annulus. The expandable core is formed of individually movable, axially elongated segments whose outer faces cooperatively define a cylindrical pressing surface and whose inner faces cooperatively define two opposed, inwardly tapered, axial bores. Tapered rams extend respectively into the bores. The loaded tool is mounted in a conventional hot-press provided with evacuation means, heaters for maintaining its interior at bonding temperature, and hydraulic cylinders for maintaining a selected inwardly directed pressure on the tapered rams. With the hot-press evacuated and the loaded tool at the desired temperature, the cylinders are actuated to apply the selected pressure to the rams. The rams in turn expand the segmented core to maintain the nested components in compression against the restraining member. These conditions are maintained until the confronting faces of the nested components are joined in a continuous, uniform bond characterized by high thermal conductivity.

Collection of mammal manure and other Debris by nesting Burrowing Owls

USGS Publications Warehouse

Smith, M.D.; Conway, C.J.

2011-01-01

Burrowing Owls (Athene cunicularia) routinely collect and scatter dry manure of mammals around their nesting burrows. Recent studies have suggested this behavior attracts insect prey to the nesting burrow. However, some Burrowing Owls do not use manure, but instead, collect and scatter other materials (e.g., grass, moss, paper, plastic) around their nesting burrow in a similar fashion. Use of these materials seemingly contradicts the prey-attraction hypothesis. Using observational and experimental methods, we tested whether Burrowing Owls preferred manure to other materials commonly found at nesting burrows in eastern Washington. We found a wide variety of materials at nests, but grass and manure were the most common materials. The amount of manure present at nests was negatively correlated with the amount of other materials, and with the distance to the nearest source of manure. Burrowing Owls showed no preference between horse manure and grass divots at experimental supply stations that we placed near nesting burrows. They did prefer these two materials to carpet pieces and aluminum foil (both materials that are often found at Burrowing Owl nests). Our results did not support the premise that Burrowing Owls specifically seek out manure when lining their nesting burrows. The unusual behavior of collecting and scattering mammal manure and other debris at Burrowing Owl nests may serve functions other than (or in addition to) prey attraction and alternative hypotheses need further testing before the function of this behavior is certain. ?? 2011 The Raptor Research Foundation, Inc.

Resident areas and migrations of female green turtles nesting at Buck Island Reef National Monument, St. Croix, U.S. Virgin Islands

USGS Publications Warehouse

Hart, Kristen M.; Iverson, Autumn; Benscoter, Allison M.; Fujisaki, Ikuko; Cherkiss, Michael S.; Pollock, Clayton; Lundgren, Ian; Hillis-Starr, Zandy

2017-01-01

Satellite tracking in marine turtle studies can reveal much about their spatial use of breeding areas, migration zones, and foraging sites. We assessed spatial habitat-use patterns of 10 adult female green turtles (Chelonia mydas) nesting at Buck Island Reef National Monument, U.S. Virgin Islands (BIRNM) from 2011 – 2014. Turtles ranged in size from 89.0 – 115.9 cm CCL (mean + SD = 106.8 + 7.7 cm). The inter-nesting period across all turtles ranged from 31 July to 4 November, and sizes of the 50% core-use areas during inter-nesting ranged from 4.2 – 19.0 km2. Inter-nesting core-use areas were located up to1.4 km from shore and had bathymetry values ranging from -17.0 to -13.0 m. Seven of the ten turtles remained locally resident after the nesting season. Five turtles (50%) foraged around Buck Island, two foraged around the island of St. Croix, and the other three (30%) made longer-distance migrations to Antigua, St. Kitts & Nevis, and Venezuela. Further, five turtles had foraging centroids within protected areas. Delineating spatial areas and identifying temporal periods of nearshore habitat-use can be useful for natural resource managers with responsibility for overseeing vulnerable habitats and protected marine turtle populations.

Maternal androgens increase sibling aggression, dominance, and competitive ability in the siblicidal black-legged kittiwake (Rissa tridactyla).

PubMed

Müller, Martina S; Roelofs, Yvonne; Erikstad, Kjell Einar; Groothuis, Ton G G

2012-01-01

Animals and plants routinely produce more offspring than they can afford to rear. Mothers can favour certain young by conferring on them competitive advantages such as a leading position in the birth sequence, more resources or hormones. Avian mothers create hatching asynchrony within a clutch and at the same time bestow the eggs with different concentrations of androgens that may enhance or counteract the competitive advantage experienced by early-hatching "core" young. In siblicidal birds, core young assume a dominant social position in the nest due to their size advantage and when threatened with starvation fatally attack subdominant later-hatching "marginal" young. A role for maternal androgens in siblicidal aggression has frequently been suggested but never tested. We studied this in the facultatively siblicidal black-headed kittiwake. We found that marginal eggs contain higher instead of lower concentrations of androgens than core eggs. Surprisingly, exposure to experimentally elevated yolk androgens increased sibling aggression and dominance, even though in nature marginal eggs never produce dominant chicks. We propose the "adoption facilitation hypothesis" to explain this paradox. This cliff-nesting colonial species has a high adoption rate: ejected marginal kittiwake chicks frequently fall into other nests containing chicks of similar or smaller size and exposure to yolk androgens might help them integrate themselves into a foster nest.

Organochlorine and heavy metal residues in bald eagle eggs

USGS Publications Warehouse

Krantz, W.C.; Mulhern, B.M.; Bagley, George E.; Sprunt, A.; Ligas, F.J.; Robertson, W.B.

1970-01-01

Bald eagle eggs collected in 1968 from nests in Wisconsin, Maine, and Florida all contained residues of DDE, DDD, dieldrin, heptachlor epoxide, and polychlorinated biphenyls. Many also contained traces of DDT. Eggs from five nonproductive nests sampled in Maine contained much higher residues than did eggs collected from either productive or nonproductive nests in Wisconsin and Florida.

Obtaining and Storing House Sparrow Eggs in Quantity for Nest-Predation Experiments

Treesearch

Richard M. DeGraaf; Thomas J. Maier

2001-01-01

House Sparrow (Passer domesticus) eggs are useful in artificial nest experiments because they are approximately the same size and shell thickness as those of many forest passerines. House Sparrow eggs can be readily collected in quantity by providing nest boxes in active livestock barns. We collected over 1200 eggs in three years (320-567 per year)...

Parallel tiled Nussinov RNA folding loop nest generated using both dependence graph transitive closure and loop skewing.

PubMed

Palkowski, Marek; Bielecki, Wlodzimierz

2017-06-02

RNA secondary structure prediction is a compute intensive task that lies at the core of several search algorithms in bioinformatics. Fortunately, the RNA folding approaches, such as the Nussinov base pair maximization, involve mathematical operations over affine control loops whose iteration space can be represented by the polyhedral model. Polyhedral compilation techniques have proven to be a powerful tool for optimization of dense array codes. However, classical affine loop nest transformations used with these techniques do not optimize effectively codes of dynamic programming of RNA structure predictions. The purpose of this paper is to present a novel approach allowing for generation of a parallel tiled Nussinov RNA loop nest exposing significantly higher performance than that of known related code. This effect is achieved due to improving code locality and calculation parallelization. In order to improve code locality, we apply our previously published technique of automatic loop nest tiling to all the three loops of the Nussinov loop nest. This approach first forms original rectangular 3D tiles and then corrects them to establish their validity by means of applying the transitive closure of a dependence graph. To produce parallel code, we apply the loop skewing technique to a tiled Nussinov loop nest. The technique is implemented as a part of the publicly available polyhedral source-to-source TRACO compiler. Generated code was run on modern Intel multi-core processors and coprocessors. We present the speed-up factor of generated Nussinov RNA parallel code and demonstrate that it is considerably faster than related codes in which only the two outer loops of the Nussinov loop nest are tiled.

State recovery and lockstep execution restart in a system with multiprocessor pairing

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gara, Alan; Gschwind, Michael K; Salapura, Valentina

System, method and computer program product for a multiprocessing system to offer selective pairing of processor cores for increased processing reliability. A selective pairing facility is provided that selectively connects, i.e., pairs, multiple microprocessor or processor cores to provide one highly reliable thread (or thread group). Each paired microprocessor or processor cores that provide one highly reliable thread for high-reliability connect with a system components such as a memory "nest" (or memory hierarchy), an optional system controller, and optional interrupt controller, optional I/O or peripheral devices, etc. The memory nest is attached to a selective pairing facility via a switchmore » or a bus. Each selectively paired processor core is includes a transactional execution facility, whereing the system is configured to enable processor rollback to a previous state and reinitialize lockstep execution in order to recover from an incorrect execution when an incorrect execution has been detected by the selective pairing facility.« less

Cerulean warbler reproduction, survival, and models of population decline

Treesearch

David A. Buehler; James J. Giocomo; Jason Jones; Paul B. Hamel; Christopher M. Rogers; Tiffany A. Beachy; Dustin W. Varble; Charles P. Nicholson; Kirk L. Roth; JEnnifer Barg; Raleigh J. Robertson; Joseph R. Robb; Kamal Islam

2008-01-01

We present and compare demographic data for cerulean warblers (Dendroica cerulea) from 5 study sites across the range of the species from 1992 to 2006. We conducted field studies to collect data on daily nest survival, nest success, and young fledged per successful nest, and we used data to estimate fecundity. Daily nest survival, nest success, young...

Collective fluid mechanics of honeybee nest ventilation

NASA Astrophysics Data System (ADS)

Gravish, Nick; Combes, Stacey; Wood, Robert J.; Peters, Jacob

2014-11-01

Honeybees thermoregulate their brood in the warm summer months by collectively fanning their wings and creating air flow through the nest. During nest ventilation workers flap their wings in close proximity in which wings continuously operate in unsteady oncoming flows (i.e. the wake of neighboring worker bees) and near the ground. The fluid mechanics of this collective aerodynamic phenomena are unstudied and may play an important role in the physiology of colony life. We have performed field and laboratory observations of the nest ventilation wing kinematics and air flow generated by individuals and groups of honeybee workers. Inspired from these field observations we describe here a robotic model system to study collective flapping wing aerodynamics. We microfabricate arrays of 1.4 cm long flapping wings and observe the air flow generated by arrays of two or more fanning robotic wings. We vary phase, frequency, and separation distance among wings and find that net output flow is enhanced when wings operate at the appropriate phase-distance relationship to catch shed vortices from neighboring wings. These results suggest that by varying position within the fanning array honeybee workers may benefit from collective aerodynamic interactions during nest ventilation.

Bee species-specific nesting material attracts a generalist parasitoid: implications for co-occurring bees in nest box enhancements.

PubMed

Macivor, J Scott; Salehi, Baharak

2014-08-01

Artificial nests (e.g., nest boxes) for bees are increasingly being used to contribute to nesting habitat enhancement for bees that use preexisting cavities to provision brood. They usually incorporate additional nesting materials that vary by species. Cavity-nesting bees are susceptible to brood parasitoids that recognize their host(s) using visual and chemical cues. Understanding the range of cues that attract parasitoids to bee nests, including human-made analogues, is important if we wish to control parasitism and increase the potential value of artificial nests as habitat-enhancement strategies. In this study, we investigated the cues associated with the orientation of the generalist brood parasitoid Monodontomerus obscurus Westwood (Hymenoptera: Torymidae) to the nests of a common cavity-nesting resin bee Megachile campanulae (Robertson) (Megachilidae). The parasitoids were reared from previously infested M. campanulae brood cells and placed into choice trials where they were presented with pairs of different nest material cues. Among different materials tested, we found that Mo. obscurus was most attracted to fresh resin collected directly from Pinus strobus trees followed by previously used resin collected from the bee nest. The parasitoid also attacked other bee species in the same nest boxes, including those that do not use resin for nesting. Our findings suggest that M. campanulae could act as a magnet, drawing parasites away from other bee hosts co-occurring in nest boxes, or, as an attractant of Mo. obscurus to nest boxes, increasing attacks on co-occurring host bee species, potentially undermining bee diversity enhancement initiatives.

Low heritability of nest construction in a wild bird.

PubMed

Järvinen, Pauliina; Kluen, Edward; Brommer, Jon E

2017-10-01

In birds and other taxa, nest construction varies considerably between and within populations. Such variation is hypothesized to have an adaptive (i.e. genetic) basis, but estimates of heritability in nest construction are largely lacking. Here, we demonstrate with data collected over 10 years from 1010 nests built by blue tits in nest-boxes that nest size (height of nest material) and nest composition (proportion of feathers in the nest) are repeatable but only weakly (12-13%) heritable female traits. These findings imply that nest construction may evolve but only if subjected to strong and consistent selection pressures. © 2017 The Author(s).

Development of the AOML Hurricane Research System

NASA Astrophysics Data System (ADS)

Yeh, K.; Gopalakrishnan, S.; Zhang, X.; Bao, J.; Quirino, T.; Sainani, V.; Rogers, R.; Aberson, S.; Marks, F.; Atlas, R.

2008-12-01

NOAA's Atlantic Oceanographic and Meteorological Laboratory (AOML) has committed to the development of a modeling and data-assimilation system recently. This Hurricane Research System (HRS) aims to improve hurricane forecast by developing innovative modeling techniques, and by assimilating the hurricane inner-core data that is timely collected with aircrafts by the scientists at the AOML Hurricane Research Division (HRD), in addition to the data collected by other channels. We have started the development of the HRS by implementing a moving nest within a regional domain on the Weather Research and Forecasting (WRF) Nonhydrostatic Mesoscale Model (NMM). The dynamically moving nest is used to track the hurricane with an enhanced resolution to better simulate the hurricane structure with more accurate dynamical and physical processes. Combining with the diagnostic expertise at the HRD, and benefiting from the community efforts, we have quickly composed the HRS with excellent ingredients from various organizations. This baseline system has been in experimental operation for this hurricane season, and early result with these experiments seems quite promising. We have also developed a new visualization tool and an efficient post-processor emphasizing diagnostic functionality to facilitate hurricane research. Further development of the HRS includes the implementation of a third, moving nest to advance the model resolution to 1 km or higher with the limited computing resource. Innovative model initialization techniques and versatile hurricane-diagnostic tools are undergoing development. An Ensemble Kalman Filter is being constructed for the HRS to assimilate observation data. Physical parameterizations are being refined to improve the forcing and heating mechanisms, and ocean model coupling is to be implemented for realistic air-sea interactions. We will report the status up to date.

Chapter 5: Nesting Biology and Behavior of the Marbled Murrelet

Treesearch

S. Kim Nelson; Thomas E. Hamer

1995-01-01

We summarize courtship, incubation, feeding, fledging, and flight behavior of Marbled Murrelets (Brachyramphus marmoratus) using information collected at 24 nest sites in North America. Chick development, vocalizations given by adults and chicks at the nest, and predator avoidance behaviors are also described. Marbled Murrelets initiate nesting as...

[Fleas from the nests of Passer domesticus and Passer montanus].

PubMed

Kaczmarek, S

1991-01-01

In the years 1986-1988 102 nests of Passer domesticus and 113 nests of P. montanus were collected from Słupsk, Warszawa and its surrounding. Ceratophyllus gallinae was found in 55 nests of P. domesticus and in 74 nests of P. montanus: C. fringillae in 13 nests of P. domesticus. The highest mean number of C. gallinae per nest was recorded in nest of P. domesticus (11.9), lower in nest of P. montanus (5.9). The highest percentage of nests with fleas and the highest mean number of fleas per nest were recorded in September in P. domesticus and in June, July and September in P. montanus. The highest (111) nests to be inhabited by 1-10 specimens. Number of specimens in nests was not depending on the weight nests.

Collecting a sample of loggerhead sea turtle hatchlings before a natural emergence does not reduce nest productivity

USGS Publications Warehouse

Salmon, Michael; Carthy, Raymond R.; Lohmann, Catherine M. F.; Lohmann, Kenneth J.; Wyneken, Jeanette

2012-01-01

 In numerous studies involving hatchling sea turtles, researchers have collected small numbers of hatchlings from nests a few hours before the turtles would otherwise have emerged naturally. This procedure makes it possible to do experiments in which the behavioral or physiological responses of numerous hatchlings must be tested in a limited period of time, and also allows hatchlings to be released back into the sea in time to migrate offshore before dawn. In principle, however, the procedure might inadvertently reduce nest productivity (the number of hatchlings that successfully leave the nest), if digging into a nest prior to emergence somehow reduces the ability of the remaining turtles to emerge. We compared nest productivity in 67 experimental loggerhead nests, from which we removed 10 hatchlings before a natural emergence, to 95 control nests left undisturbed before a natural emergence. The 2 groups showed no statistical differences in productivity. We conclude that taking a few hatchlings from a loggerhead nest shortly before a natural emergence has no negative impact on hatchling production if sampling is done with care at locations where there are few nest predators, and at sites where an emergence can be predicted because nest deposition dates are known.

Reading Instruction in Tier 1: Bridging the Gaps by Nesting Evidence-Based Interventions within Differentiated Instruction

ERIC Educational Resources Information Center

Jones, Ruth E.; Yssel, Nina; Grant, Christina

2012-01-01

Response to Intervention (RtI) has brought about many changes in the way educational services are being provided to students who are at risk of school failure. Schools are seeking strategies that will be beneficial to more and more students, including those students whose instruction is primarily in the core, or Tier 1. Nesting proven,…

Predicting nest success from habitat features in aspen forests of the central Rocky Mountains

Treesearch

Heather M. Struempf; Deborah M. Finch; Gregory Hayward; Stanley Anderson

2001-01-01

We collected nesting data on bird use of aspen stands in the Routt and Medicine Bow National Forests between 1987 and 1989. We found active nest sites of 28 species of small nongame birds on nine study plots in undisturbed aspen forests. We compared logistic regression models predicting nest success (at least one nestling) from nest-site or stand-level habitat...

Assessment of Contaminant Exposure and Effects on Ospreys Nesting along the Lower Duwamish River, Washington, 2006-07

USGS Publications Warehouse

Johnson, Branden L.; Henny, Charles J.; Kaiser, James L.; Davis, Jay W.; Schulz, Edmund P.

2009-01-01

We evaluated the effects of contaminants on osprey (Pandion haliaetus) nesting along the lower Duwamish River (LDR), Washington, and used the upper reach of the Willamette River (WR), Oregon, as a reference site. Osprey eggs and nestling blood (plasma) were collected at nests along the LDR (11 eggs, 7 plasmas) and WR (10 eggs, 6 plasmas) in 2006-07 and analyzed for contaminants. Additionally, hematology and serum chemistries were determined in the blood/plasma samples of nestlings (about 35-45 days old) and were used as potential indicators of stress induced by contaminant exposure. Detailed foraging information for ospreys nesting along the LDR was collected and evaluated to better understand contaminant profiles observed in the eggs and plasma. Additional residue data from 26 osprey eggs collected and analyzed in 2002-03 from nests along the LDR, Snohomish River Estuary (SRE) and Lake Washington (LW) in the Puget Sound (PS) region also were evaluated.

Monitoring and improving the sensitivity of dengue nested RT-PCR used in longitudinal surveillance in Thailand.

PubMed

Klungthong, Chonticha; Manasatienkij, Wudtichai; Phonpakobsin, Thipwipha; Chinnawirotpisan, Piyawan; Rodpradit, Prinyada; Hussem, Kittinun; Thaisomboonsuk, Butsaya; Ong-ajchaowlerd, Prapapun; Nisalak, Ananda; Kalayanarooj, Siripen; Buddhari, Darunee; Gibbons, Robert V; Jarman, Richard G; Yoon, In-Kyu; Fernandez, Stefan

2015-02-01

AFRIMS longitudinal dengue surveillance in Thailand depends on the nested RT-PCR and the dengue IgM/IgG ELISA. To examine and improve the sensitivity of the nested RT-PCR using a panel of archived samples collected during dengue surveillance. A retrospective analysis of 16,454 dengue IgM/IgG ELISA positive cases collected between 2000 and 2013 was done to investigate the sensitivity of the nested RT-PCR. From these cases, 318 acute serum specimens or extracted RNA, previously found to be negative by the nested RT-PCR, were tested using TaqMan real-time RT-PCR (TaqMan rRT-PCR). To improve the sensitivity of nested RT-PCR, we designed a new primer based on nucleotide sequences from contemporary strains found to be positive by the TaqMan rRT-PCR. Sensitivity of the new nested PCR was calculated using a panel of 87 samples collected during 2011-2013. The percentage of dengue IgM/IgG ELISA positive cases that were negative by the nested RT-PCR varied from 17% to 42% for all serotypes depending on the year. Using TaqMan rRT-PCR, dengue RNA was detected in 194 (61%) of the 318 acute sera or extracted RNA previously found to be negative by the nested RT-PCR. The newly designed DENV-1 specific primer increased the sensitivity of DENV-1 detection by the nested RT-PCR from 48% to 88%, and of all 4 serotypes from 73% to 87%. These findings demonstrate the impact of genetic diversity and signal erosion on the sensitivity of PCR-based methods. Published by Elsevier B.V.

Weather Research and Forecasting Model Sensitivity Comparisons for Warm Season Convective Initiation

NASA Technical Reports Server (NTRS)

Watson, Leela R.

2007-01-01

This report describes the work done by the Applied Meteorology Unit (AMU) in assessing the success of different model configurations in predicting warm season convection over East-Central Florida. The Weather Research and Forecasting Environmental Modeling System (WRF EMS) software allows users to choose among two dynamical cores - the Advanced Research WRF (ARW) and the Non-hydrostatic Mesoscale Model (NMM). There are also data assimilation analysis packages available for the initialization of the WRF model - the Local Analysis and Prediction System (LAPS) and the Advanced Regional Prediction System (ARPS) Data Analysis System (ADAS). Besides model core and initialization options, the WRF model can be run with one- or two-way nesting. Having a series of initialization options and WRF cores, as well as many options within each core, creates challenges for local forecasters, such as determining which configuration options are best to address specific forecast concerns. This project assessed three different model intializations available to determine which configuration best predicts warm season convective initiation in East-Central Florida. The project also examined the use of one- and two-way nesting in predicting warm season convection.

Daily survival rates for nests of Black Skimmers from a core breeding area of the Southeastern USA

USGS Publications Warehouse

Brooks, Gillian L.; Sanders, Felicia J.; Gerard, Patrick D.; Jodice, Patrick G.R.

2014-01-01

Little is known about the reproductive success of Black Skimmers (Rynchops niger) throughout the southeastern USA where availability of undisturbed beaches for nesting is limited. Daily survival rates (DSR) of nests were examined at three nesting sites in Cape Romain National Wildlife Refuge (CRNWR), South Carolina, USA, 2009–2010. The percent of successful nests (n  =  346 nests) ranged from 42–69% among colony sites when data were pooled across both years. The DSR of nests was primarily related to colony site, predation risk, height of high tide, and clutch size. Predation and overwash were the principal causes of identifiable nest loss, each accounting for ∼33% of nest failures during the two study years. Because of the challenges of resighting skimmer chicks, we were not able to measure chick survival effectively and therefore accurate measures of productivity remain elusive. High variability in nest success among sites within close proximity to each other (<20 km) suggests factors at local scales such as disturbance, predation, and overwash events strongly influenced nest success of Black Skimmers during these 2 years as opposed to more region-wide stressors such as tropical storms or food availability. Although time-intensive techniques to control predators do exist, management options to limit flooding and overwash are far more limited. Conservation of Black Skimmers in the southeastern USA would benefit from coordinated, multi-state efforts to measure nest and chick survival.

Habitat edges have weak effects on duck nest survival at local spatial scales

USGS Publications Warehouse

Raquel, Amelia J; Ringelman, Kevin M.; Ackerman, Joshua T.; Eadie, John M.

2015-01-01

Edge effects on nesting success have been documented in breeding birds in a variety of contexts, but there is still uncertainty in how edge type and spatial scale determine the magnitude and detectability of edge effects. Habitat edges are often viewed as predator corridors that surround or penetrate core habitat and increase the risk of predation for nearby nests. We studied the effects of three different types of potential predator corridors (main perimeter roads, field boundaries, and ATV trails within fields) on waterfowl nest survival in California. We measured the distance from duck nests to the nearest edge of each type, and used distance as a covariate in a logistic exposure analysis of nest survival. We found only weak evidence for edge effects due to predation. The best supported model of nest survival included all three distance categories, and while all coefficient estimates were positive (indicating that survival increased with distance from edge), 85% coefficient confidence intervals approached or bounded zero indicating an overall weak effect of habitat edges on nest success. We suggest that given the configuration of edges at our site, there may be few areas far enough from hard edges to be considered ‘core’ habitat, making edge effects on nest survival particularly difficult to detect.

The dependability of medical students' performance ratings as documented on in-training evaluations.

PubMed

van Barneveld, Christina

2005-03-01

To demonstrate an approach to obtain an unbiased estimate of the dependability of students' performance ratings during training, when the data-collection design includes nesting of student in rater, unbalanced nest sizes, and dependent observations. In 2003, two variance components analyses of in-training evaluation (ITE) report data were conducted using urGENOVA software. In the first analysis, the dependability for the nested and unbalanced data-collection design was calculated. In the second analysis, an approach using multiple generalizability studies was used to obtain an unbiased estimate of the student variance component, resulting in an unbiased estimate of dependability. Results suggested that there is bias in estimates of the dependability of students' performance on ITEs that are attributable to the data-collection design. When the bias was corrected, the results indicated that the dependability of ratings of student performance was almost zero. The combination of the multiple generalizability studies method and the use of specialized software provides an unbiased estimate of the dependability of ratings of student performance on ITE scores for data-collection designs that include nesting of student in rater, unbalanced nest sizes, and dependent observations.

Trap Nesting Wasps and Bees in Agriculture: A Comparison of Sown Wildflower and Fallow Plots in Florida

PubMed Central

Smithers, Cherice; Irvin, Allyn; Stanley-Stahr, Cory; Daniels, Jaret C.; Ellis, James D.

2017-01-01

Wildflower strip plantings in intensive agricultural systems have become a widespread tool for promoting pollination services and biological conservation because of their use by wasps and bees. Many of the trap-nesting wasps are important predators of common crop pests, and cavity-nesting bees that utilize trap-nests are important pollinators for native plants and many crops. The impact of wildflower strips on the nesting frequency of trap-nesting wasps or bees within localized areas has not been thoroughly investigated. Trap-nests made of bamboo reeds (Bambusa sp.) were placed adjacent to eight 0.1 ha wildflower plots and paired fallow areas (control plots) to determine if wildflower strips encourage the nesting of wasps and bees. From August 2014 to November 2015, occupied reeds were gathered and adults were collected as they emerged from the trap-nests. Treatment (wildflower or fallow plots) did not impact the number of occupied reeds or species richness of trap-nesting wasps using the occupied reeds. The wasps Pachodynerus erynnis, Euodynerus megaera, Parancistrocerus pedestris, and Isodontia spp. were the most common trap-nesting species collected. Less than 2% of the occupied reeds contained bees, and all were from the genus Megachile. The nesting wasp and bee species demonstrated preferences for reeds with certain inside diameters (IDs). The narrow range of ID preferences exhibited by each bee/wasp may provide opportunities to take advantage of their natural histories for biological control and/or pollination purposes. PMID:28994726

Core Outcomes in Ventilation Trials (COVenT): protocol for a core outcome set using a Delphi survey with a nested randomised trial and observational cohort study.

PubMed

Blackwood, Bronagh; Ringrow, Suzanne; Clarke, Mike; Marshall, John; Rose, Louise; Williamson, Paula; McAuley, Danny

2015-08-20

Among clinical trials of interventions that aim to modify time spent on mechanical ventilation for critically ill patients there is considerable inconsistency in chosen outcomes and how they are measured. The Core Outcomes in Ventilation Trials (COVenT) study aims to develop a set of core outcomes for use in future ventilation trials in mechanically ventilated adults and children. We will use a mixed methods approach that incorporates a randomised trial nested within a Delphi study and a consensus meeting. Additionally, we will conduct an observational cohort study to evaluate uptake of the core outcome set in published studies at 5 and 10 years following core outcome set publication. The three-round online Delphi study will use a list of outcomes that have been reported previously in a review of ventilation trials. The Delphi panel will include a range of stakeholder groups including patient support groups. The panel will be randomised to one of three feedback methods to assess the impact of the feedback mechanism on subsequent ranking of outcomes. A final consensus meeting will be held with stakeholder representatives to review outcomes. The COVenT study aims to develop a core outcome set for ventilation trials in critical care, explore the best Delphi feedback mechanism for achieving consensus and determine if participation increases use of the core outcome set in the long term.

Nest observations of the long-eared owl (Asio otus) in Benton County, Oregon, with notes on their food habits

Treesearch

Richard T. Reynolds

1970-01-01

A nesting pair of long-eared owls was found 10 miles north of Corvallis, Benton County, Oregon, on 24 April, 1969. The pair was observed and photographed until 30 May, when the young left the nest. This is the third record of nesting Asio otus west of the Oregon Cascades. Gabrielson and Jewett (1940) reported that Pope collected eggs from a nest...

Diversity of chromosomal karyotypes in maize and its relatives.

PubMed

Albert, P S; Gao, Z; Danilova, T V; Birchler, J A

2010-07-01

Maize is a highly diverse species on the gene sequence level. With the recent development of methods to distinguish each of the 10 pairs of homologues in somatic root tip spreads, a wide collection of maize lines was subjected to karyotype analysis to serve as a reference for the community and to examine the spectrum of chromosomal features in the species. The core nested association mapping progenitor collection and additional selections of diversity lines were examined. Commonly used inbred lines were included in the analysis. The centromere 4 specific repeat and ribosomal RNA loci were invariant. The CentC centromere repeat exhibited extensive differences in quantity on any particular chromosome across lines. Knob heterochromatin was highly variable with locations at many sites in the genome. Lastly, representative examples from other species in the genus Zea (teosintes) were examined, which provide information on the evolution of chromosomal features. Copyright 2010 S. Karger AG, Basel.

Soil attributes drive nest-site selection by the campo miner Geositta poeciloptera.

PubMed

Meireles, Ricardo Camargos de; Teixeira, João Paulo Gusmão; Solar, Ricardo; Vasconcelos, Bruno Nery F; Fernandes, Raphael B A; Lopes, Leonardo Esteves

2018-01-01

Substrate type is a key-factor in nest-site selection and nest architecture of burrowing birds. However, little is known about which factors drive nest-site selection for these species, especially in the tropics. We studied the influence of soil attributes on nest-site selection by the campo miner Geositta poeciloptera, an open grassland bird that builds its nests within soil cavities. For all nests found, we measured the depth of the nest cavity and the resistance of the soil to penetration, and identified the soil horizon in which the nest was located. In soil banks with nests, we collected soil samples for granulometric analysis around each nest cavity, while in soil banks without nests we collected these samples at random points. From 43 nests found, 86% were located in the deeper soil horizons (C-horizon), and only 14% in the shallower horizons (B-horizon). Granulometric analysis showed that the C-horizons possessed a high similar granulometric composition, with high silt and low clay contents. These characteristics are associated with a low degree of structural development of the soil, which makes it easier to excavate. Contrarily, soil resistance to penetration does not seem to be an important criterion for nest site selection, although nests in more resistant the soils tend to have shallower nest cavities. Among the soil banks analyzed, 40% of those without cavities possessed a larger proportion of B-horizon relative to the C-horizon, and their texture was more clayey. On the other hand, almost all soil banks containing nest cavities had a larger C-horizon and a silty texture, indicating that soil attributes drive nest-site selection by G. poeciloptera. Thus, we conclude that the patchy distribution of G. poeciloptera can attributed to the infrequent natural exposure of the C-horizon in the tropical region, where well developed, deep and permeable soils are more common.

Soil attributes drive nest-site selection by the campo miner Geositta poeciloptera

PubMed Central

Teixeira, João Paulo Gusmão; Solar, Ricardo; Vasconcelos, Bruno Nery F.; Fernandes, Raphael B. A.; Lopes, Leonardo Esteves

2018-01-01

Substrate type is a key-factor in nest-site selection and nest architecture of burrowing birds. However, little is known about which factors drive nest-site selection for these species, especially in the tropics. We studied the influence of soil attributes on nest-site selection by the campo miner Geositta poeciloptera, an open grassland bird that builds its nests within soil cavities. For all nests found, we measured the depth of the nest cavity and the resistance of the soil to penetration, and identified the soil horizon in which the nest was located. In soil banks with nests, we collected soil samples for granulometric analysis around each nest cavity, while in soil banks without nests we collected these samples at random points. From 43 nests found, 86% were located in the deeper soil horizons (C-horizon), and only 14% in the shallower horizons (B-horizon). Granulometric analysis showed that the C-horizons possessed a high similar granulometric composition, with high silt and low clay contents. These characteristics are associated with a low degree of structural development of the soil, which makes it easier to excavate. Contrarily, soil resistance to penetration does not seem to be an important criterion for nest site selection, although nests in more resistant the soils tend to have shallower nest cavities. Among the soil banks analyzed, 40% of those without cavities possessed a larger proportion of B-horizon relative to the C-horizon, and their texture was more clayey. On the other hand, almost all soil banks containing nest cavities had a larger C-horizon and a silty texture, indicating that soil attributes drive nest-site selection by G. poeciloptera. Thus, we conclude that the patchy distribution of G. poeciloptera can attributed to the infrequent natural exposure of the C-horizon in the tropical region, where well developed, deep and permeable soils are more common. PMID:29381768

Mapping risk for nest predation on a barrier island

USGS Publications Warehouse

Hackney, Amanda D.; Baldwin, Robert F.; Jodice, Patrick G.R.

2013-01-01

Barrier islands and coastal beach systems provide nesting habitat for marine and estuarine turtles. Densely settled coastal areas may subsidize nest predators. Our purpose was to inform conservation by providing a greater understanding of habitat-based risk factors for nest predation, for an estuarine turtle. We expected that habitat conditions at predated nests would differ from random locations at two spatial extents. We developed and validated an island-wide model for the distribution of predated Diamondback terrapin nests using locations of 198 predated nests collected during exhaustive searches at Fisherman Island National Wildlife Refuge, USA. We used aerial photographs to identify all areas of possible nesting habitat and searched each and surrounding environments for nests, collecting location and random-point microhabitat data. We built models for the probability of finding a predated nest using an equal number of random points and validated them with a reserve set (N = 67). Five variables in 9 a priori models were used and the best selected model (AIC weight 0.98) reflected positive associations with sand patches near marshes and roadways. Model validation had an average capture rate of predated nests of 84.14 % (26.17–97.38 %, Q1 77.53 %, median 88.07 %, Q3 95.08 %). Microhabitat selection results suggest that nests placed at the edges of sand patches adjacent to upland shrub/forest and marsh systems are vulnerable to predation. Forests and marshes provide cover and alternative resources for predators and roadways provide access; a suggestion is to focus nest protection efforts on the edges of dunes, near dense vegetation and roads.

Preliminary evaluation of a nest usage sensor to detect double nest occupations of laying hens.

PubMed

Zaninelli, Mauro; Costa, Annamaria; Tangorra, Francesco Maria; Rossi, Luciana; Agazzi, Alessandro; Savoini, Giovanni

2015-01-26

Conventional cage systems will be replaced by housing systems that allow hens to move freely. These systems may improve hens' welfare, but they lead to some disadvantages: disease, bone fractures, cannibalism, piling and lower egg production. New selection criteria for existing commercial strains should be identified considering individual data about laying performance and the behavior of hens. Many recording systems have been developed to collect these data. However, the management of double nest occupations remains critical for the correct egg-to-hen assignment. To limit such events, most systems adopt specific trap devices and additional mechanical components. Others, instead, only prevent these occurrences by narrowing the nest, without any detection and management. The aim of this study was to develop and test a nest usage "sensor", based on imaging analysis, that is able to automatically detect a double nest occupation. Results showed that the developed sensor correctly identified the double nest occupation occurrences. Therefore, the imaging analysis resulted in being a useful solution that could simplify the nest construction for this type of recording system, allowing the collection of more precise and accurate data, since double nest occupations would be managed and the normal laying behavior of hens would not be discouraged by the presence of the trap devices.

Preliminary Evaluation of a Nest Usage Sensor to Detect Double Nest Occupations of Laying Hens

PubMed Central

Zaninelli, Mauro; Costa, Annamaria; Tangorra, Francesco Maria; Rossi, Luciana; Agazzi, Alessandro; Savoini, Giovanni

2015-01-01

Conventional cage systems will be replaced by housing systems that allow hens to move freely. These systems may improve hens' welfare, but they lead to some disadvantages: disease, bone fractures, cannibalism, piling and lower egg production. New selection criteria for existing commercial strains should be identified considering individual data about laying performance and the behavior of hens. Many recording systems have been developed to collect these data. However, the management of double nest occupations remains critical for the correct egg-to-hen assignment. To limit such events, most systems adopt specific trap devices and additional mechanical components. Others, instead, only prevent these occurrences by narrowing the nest, without any detection and management. The aim of this study was to develop and test a nest usage “sensor”, based on imaging analysis, that is able to automatically detect a double nest occupation. Results showed that the developed sensor correctly identified the double nest occupation occurrences. Therefore, the imaging analysis resulted in being a useful solution that could simplify the nest construction for this type of recording system, allowing the collection of more precise and accurate data, since double nest occupations would be managed and the normal laying behavior of hens would not be discouraged by the presence of the trap devices. PMID:25629704

Nesting bird "host funnel" increases mosquito-bird contact rate.

PubMed

Caillouët, Kevin A; Riggan, Anna E; Bulluck, Lesley P; Carlson, John C; Sabo, Roy T

2013-03-01

Increases in vector-host contact rates can enhance arbovirus transmission intensity. We investigated weekly fluctuations in contact rates between mosquitoes and nesting birds using the recently described Nest Mosquito Trap (NMT). The number of mosquitoes per nestling increased from < 1 mosquito per trap night to 36.2 in the final 2 wk of the nesting season. Our evidence suggests the coincidence of the end of the avian nesting season and increasing mosquito abundances may have caused a "host funnel," concentrating host-seeking mosquitoes to the few remaining nestlings. The relative abundance of mosquitoes collected by the NMT suggests that significantly more Aedes albopictus (Skuse) and Culex pipiens (L.) /restuans (Theobald) sought nesting bird bloodmeals than were predicted by their relative abundances in CO2-baited Centers for Disease Control and Prevention light and gravid traps. Culex salinarius (Coquillett) and Culex erraticus Dyar and Knab were collected in NMTs in proportion to their relative abundances in the generic traps. Temporal host funnels and nesting bird host specificity may enhance arbovirus amplification and explain observed West Nile virus and St. Louis encephalitis virus amplification periods.

Bloodmeal Host Congregation and Landscape Structure Impact the Estimation of Female Mosquito (Diptera: Culicidae) Abundance Using Dry Ice-Baited Traps

PubMed Central

THIEMANN, TARA; NELMS, BRITTANY; REISEN, WILLIAM K.

2011-01-01

Vegetation patterns and the presence of large numbers of nesting herons and egrets significantly altered the number of host-seeking Culex tarsalis Coquillett (Diptera: Culicidae) collected at dry ice-baited traps. The numbers of females collected per trap night at traps along the ecotone of Eucalyptus stands with and without a heron colony were always greater or equal to numbers collected at traps within or under canopy. No Cx. tarsalis were collected within or under Eucaplytus canopy during the peak heron nesting season, even though these birds frequently were infected with West Nile virus and large number of engorged females could be collected at resting boxes. These data indicate a diversion of host-seeking females from traps to nesting birds reducing sampling efficiency. PMID:21661310

9 CFR 147.22 - Hatching egg sanitation.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 9 Animals and Animal Products 1 2013-01-01 2013-01-01 false Hatching egg sanitation. 147.22... Procedures § 147.22 Hatching egg sanitation. Hatching eggs should be collected from the nests at frequent... collecting the nest eggs for hatching. Egg handlers should thoroughly wash their hands with soap and water...

9 CFR 147.22 - Hatching egg sanitation.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 9 Animals and Animal Products 1 2012-01-01 2012-01-01 false Hatching egg sanitation. 147.22... Procedures § 147.22 Hatching egg sanitation. Hatching eggs should be collected from the nests at frequent... collecting the nest eggs for hatching. Egg handlers should thoroughly wash their hands with soap and water...

9 CFR 147.22 - Hatching egg sanitation.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 9 Animals and Animal Products 1 2014-01-01 2014-01-01 false Hatching egg sanitation. 147.22... Procedures § 147.22 Hatching egg sanitation. Hatching eggs should be collected from the nests at frequent... collecting the nest eggs for hatching. Egg handlers should thoroughly wash their hands with soap and water...

Update to core reporting practices in structural equation modeling.

PubMed

Schreiber, James B

This paper is a technical update to "Core Reporting Practices in Structural Equation Modeling." 1 As such, the content covered in this paper includes, sample size, missing data, specification and identification of models, estimation method choices, fit and residual concerns, nested, alternative, and equivalent models, and unique issues within the SEM family of techniques. Copyright © 2016 Elsevier Inc. All rights reserved.

NUCLEAR REACTOR

DOEpatents

Grebe, J.J.

1961-01-24

A core structure for neutronic reactors adapted for the propulsion of aircraft and rockets is offered. The core is designed for cooling by gaseous media, and comprises a plurality of hollow tapered tubular segments of a porous moderating material impregniated with fissionable fuel nested about a common axis. Alternate ends of the segments are joined. In operation a coolant gas passes through the porous structure and is heated.

Feathering Your Nest

ERIC Educational Resources Information Center

Nabors, Martha L.; Edwards, Linda Carol; Decker, Suzanne

2010-01-01

The first-grade classroom was like a natural history museum. Bird nests of every shape and size lay on top of bookshelves that lined two walls. Methods students, who were visiting the classroom in preparation for the science lessons they would teach there, were immediately inspired by the collection. They used the collection as a springboard for…

Prey of nesting ospreys on the Willamette and Columbia Rivers, Oregon and Washington

USGS Publications Warehouse

Johnson, B.L.; Kaiser, J.L.; Henny, C.J.; Grove, R.A.

2008-01-01

To more effectively use ospreys as a biomonitoring tool and to better assess contaminant pathways, the diet of nesting ospreys (Pandion haliaetus) was studied along the lower Columbia and upper mainstem Willamette rivers by evaluating prey remains collected from wire baskets constructed under artificial feeding perches installed near nest sites and from the ground beneath natural feeding perches and nests. Prey remains from 1997-2004 on the Columbia River and 1993 (previously published) and 2001 on the Willamette River were evaluated and compared. Largescale suckers (Catostomus macrocheilus) were the predominate fish species identified in collections from the Columbia River (61.5% [84.3% biomass]) and Willamette River (76.0% [92.7% biomass]). Prey fish diversity, when based only on ground collections, was higher in the Columbia (2.45) than the Willamette river (1.92) (P = 0.038). Prey fish diversity in collections from the Willamette River did not differ between this study (2001) and previous study (1993) (P = 0.62). Fishbones recovered in wire baskets are likely more representative of osprey diet compared to bones recovered from the ground, because prey diversity was higher among basket samples compared to ground collections (wire basket diversity = 5.25 vs. ground collection diversity = 2.45, P = 0.011). Soft-boned salmonids (Oncorhynchus spp.), American shad (Alosa sapidissima), and mountain whitefish (Prosopium williamsoni) were probably underrepresented in collections obtained from the ground. Study results suggest that baskets provide a better method for assessing osprey diet than other indirect methods. These findings augment available osprey food-habits information and provide additional biological and ecological information to better assess potential impacts of various environmental contaminants on nesting ospreys.

Three nested randomized controlled trials of peer-only or multiple stakeholder group feedback within Delphi surveys during core outcome and information set development.

PubMed

Brookes, Sara T; Macefield, Rhiannon C; Williamson, Paula R; McNair, Angus G; Potter, Shelley; Blencowe, Natalie S; Strong, Sean; Blazeby, Jane M

2016-08-17

Methods for developing a core outcome or information set require involvement of key stakeholders to prioritise many items and achieve agreement as to the core set. The Delphi technique requires participants to rate the importance of items in sequential questionnaires (or rounds) with feedback provided in each subsequent round such that participants are able to consider the views of others. This study examines the impact of receiving feedback from different stakeholder groups, on the subsequent rating of items and the level of agreement between stakeholders. Randomized controlled trials were nested within the development of three core sets each including a Delphi process with two rounds of questionnaires, completed by patients and health professionals. Participants rated items from 1 (not essential) to 9 (absolutely essential). For round 2, participants were randomized to receive feedback from their peer stakeholder group only (peer) or both stakeholder groups separately (multiple). Decisions as to which items to retain following each round were determined by pre-specified criteria. Whilst type of feedback did not impact on the percentage of items for which a participant subsequently changed their rating, or the magnitude of change, it did impact on items retained at the end of round 2. Each core set contained discordant items retained by one feedback group but not the other (3-22 % discordant items). Consensus between patients and professionals in items to retain was greater amongst those receiving multiple group feedback in each core set (65-82 % agreement for peer-only feedback versus 74-94 % for multiple feedback). In addition, differences in round 2 scores were smaller between stakeholder groups receiving multiple feedback than between those receiving peer group feedback only. Variability in item scores across stakeholders was reduced following any feedback but this reduction was consistently greater amongst the multiple feedback group. In the development of a core outcome or information set, providing feedback within Delphi questionnaires from all stakeholder groups separately may influence the final core set and improve consensus between the groups. Further work is needed to better understand how participants rate and re-rate items within a Delphi process. The three randomized controlled trials reported here were each nested within the development of a core information or outcome set to investigate processes in core outcome and information set development. Outcomes were not health-related and therefore trial registration was not applicable.

Recognition and characterization of hierarchical interstellar structure. II - Structure tree statistics

NASA Technical Reports Server (NTRS)

Houlahan, Padraig; Scalo, John

1992-01-01

A new method of image analysis is described, in which images partitioned into 'clouds' are represented by simplified skeleton images, called structure trees, that preserve the spatial relations of the component clouds while disregarding information concerning their sizes and shapes. The method can be used to discriminate between images of projected hierarchical (multiply nested) and random three-dimensional simulated collections of clouds constructed on the basis of observed interstellar properties, and even intermediate systems formed by combining random and hierarchical simulations. For a given structure type, the method can distinguish between different subclasses of models with different parameters and reliably estimate their hierarchical parameters: average number of children per parent, scale reduction factor per level of hierarchy, density contrast, and number of resolved levels. An application to a column density image of the Taurus complex constructed from IRAS data is given. Moderately strong evidence for a hierarchical structural component is found, and parameters of the hierarchy, as well as the average volume filling factor and mass efficiency of fragmentation per level of hierarchy, are estimated. The existence of nested structure contradicts models in which large molecular clouds are supposed to fragment, in a single stage, into roughly stellar-mass cores.

The Thermoregulatory Function of Thatched Nests in the South American Grass-Cutting Ant, Acromyrmex heyeri

PubMed Central

Bollazzi, Martin; Roces, Flavio

2010-01-01

The construction of mound-shaped nests by ants is considered as a behavioral adaptation to low environmental temperatures, i.e., colonies achieve higher and more stables temperatures than those of the environment. Besides the well-known nests of boreal Formica wood-ants, several species of South American leaf-cutting ants of the genus Acromyrmex construct thatched nests. Acromyrmex workers import plant fragments as building material, and arrange them so as to form a thatch covering a central chamber, where the fungus garden is located. Thus, the degree of thermoregulation attained by the fungus garden inside the thatched nest largely depends on how the thatch affects the thermal relations between the fungus and the environment. This work was aimed at studying the thermoregulatory function of the thatched nests built by the grass-cutting ant Acromyrmex heyeri Forel (Hymenoptera: Formicidae: Myrmicinae). Nest and environmental temperatures were measured as a function of solar radiation on the long-term. The thermal diffusivity of the nest thatch was measured and compared to that of the surrounding soil, in order to assess the influence of the building material on the nest's thermoregulatory ability. The results showed that the average core temperature of thatched nests was higher than that of the environment, but remained below values harmful for the fungus. This thermoregulation was brought about by the low thermal diffusivity of the nest thatch built by workers with plant fragments, instead of the readily-available soil particles that have a higher thermal diffusivity. The thatch prevented diurnal nest overheating by the incoming solar radiation, and avoided losses of the accumulated daily heat into the cold air during the night. The adaptive value of thatching behavior in Acromyrmex leaf-cutting ants occurring in the southernmost distribution range is discussed. PMID:20883129

Excavated substrate modulates growth instability during nest building in ants

PubMed Central

Toffin, Etienne; Kindekens, Jonathan; Deneubourg, Jean-Louis

2010-01-01

In social insects, the nests of the same species can show a large difference in size and shape. Despite these large variations, the nests share the same substructures, some appearing during nest growth. In ants, the interplay between nest size and digging activity leads to two successive morphological transitions from circular to branched shapes (budding along the perimeter of the circular cavity and tunnelling of the galleries). Like several other self-organized collective behaviours, this phenomenon, as well as the entire nest-digging process, is thought to be modulated by environmental properties. The present study investigates the effect of excavated substrate on the nest morphogenesis and the morphological transitions by using two materials with different cohesions. Here, we show that the two morphological transitions occur more frequently with a cohesive substrate than with a granular one: 96 per cent of cohesive experiments showed both transitions, whereas only 50 per cent did in granular experiments. We found that transitions and excavation cessation follow area–response thresholds: the shape transitions take place and the digging activity stops when the dug area reaches the corresponding threshold values. The shape transition thresholds are lower with the cohesive substrate and that of stopping digging is independent of nest shape and material. According to simulations, the experimental frequencies of transitions found their origin in the competition between transitions and activity cessation and in the difference between the transition threshold values of each substrate. Our results demonstrate how the substrate properties modulate the collective response and lead to various patterns. Considering the non-specific mechanisms at work, such effects of substrate coarseness have their counterparts in various collective behaviours, generating alternative patterns to colonize and exploit the environment. PMID:20410036

User's guide for Northeast Stand Exam Program (NEST Version 2.1).

Treesearch

Thomas M. Schuler; Brian T. Simpson

1991-01-01

Explains the Northeast Stand Exam (NEST Version 2.1) program. The NEST program was designed for use on the Polycorder 600 Series electronic portable data recorder to record data collected from the standard permanent plot as described by the Stand Culture and Stand Establishment Working Groups of the Northeastern Forest Experiment Station.

Haunting Native Speakerism? Students' Perceptions toward Native Speaking English Teachers in Taiwan

ERIC Educational Resources Information Center

Wu, Kun-huei; Ke, Chung

2009-01-01

This paper intends to explore how Taiwanese university students perceive their native-speaking English teachers (NESTs). Mutual expectations between the NESTs and students are also investigated. Collected data include questionnaires from 107 students and interviews with three NESTs and 19 students who have filled out the questionnaire. The result…

Usage of Nest Materials by House Sparrow (Passer domesticus) Along an Urban to Rural Gradient in Coimbatore, India.

PubMed

Radhamany, Dhanya; Das, Karumampoyil Sakthidas Anoop; Azeez, Parappurath Abdul; Wen, Longying; Sreekala, Leelambika Krishnan

2016-08-01

The house sparrow (Passer domesticus) is a widely distributed bird species found throughout the world. Being a species which has close association with humans, they chiefly nest on man-made structures. Here we describe the materials used by the house sparrow for making nests along an urban to rural gradient. For the current study, we selected the Coimbatore to Anaikatty road (State Highway-164), a 27 km inter-state highway, which traverses along an urban core to rural outstretch of Coimbatore. Of the 30 nests observed, 15 nests were from the rural, 8 were from the suburban, and 7 were from the urban areas. The nests had two distinct layers, specifically the structural layer and the inner lining. In the current study, we identified 11 plant species, 2 types of animal matter, and 6 types of anthropogenic matter, including plastic pieces and fine rope. The amount of anthropogenic materials in the nest formation varied along the gradients. The usage of anthropogenic materials was high in urban areas (p<0.05) whereas it did not differ at the sub-urban regions (p>0.05). A gradual decrease in the usage of plant matter towards the urban area was noticed (p<0.05). This study explicitly documents the links between nest material usage along an urban to rural gradient, in a human associated bird.

Nesting ecology and nest survival of lesser prairie-chickens on the Southern High Plains of Texas

USGS Publications Warehouse

Grisham, Blake A.; Borsdorf, Philip K.; Boal, Clint W.; Boydston, Kathy K.

2014-01-01

The decline in population and range of lesser prairie-chickens (Tympanuchus pallidicinctus) throughout the central and southern Great Plains has raised concerns considering their candidate status under the United States Endangered Species Act. Baseline ecological data for lesser prairie-chickens are limited, especially for the shinnery oak-grassland communities of Texas. This information is imperative because lesser prairie-chickens in shinnery oak grasslands occur at the extreme southwestern edge of their distribution. This geographic region is characterized by hot, arid climates, less fragmentation, and less anthropogenic development than within the remaining core distribution of the species. Thus, large expanses of open rangeland with less anthropogenic development and a climate that is classified as extreme for ground nesting birds may subsequently influence nest ecology, nest survival, and nest site selection differently compared to the rest of the distribution of the species. We investigated the nesting ecology of 50 radio-tagged lesser prairie-chicken hens from 2008 to 2011 in the shinnery oak-grassland communities in west Texas and found a substantial amount of inter-annual variation in incubation start date and percent of females incubating nests. Prairie-chickens were less likely to nest near unimproved roads and utility poles and in areas with more bare ground and litter. In contrast, hens selected areas dominated by grasses and shrubs and close to stock tanks to nest. Candidate models including visual obstruction best explained daily nest survival; a 5% increase in visual obstruction improved nest survival probability by 10%. The model-averaged probability of a nest surviving the incubation period was 0.43 (SE = 0.006; 95% CI: 0.23, 0.56). Our findings indicate that lesser prairie-chicken reproduction during our study period was dynamic and was correlated with seasonal weather patterns that ultimately promoted greater grass growth earlier in the nesting season that provided visual obstruction from predators.

Trap-Nesting Bees in Montane Grassland (Campo Rupestre) and Cerrado in Brazil: Collecting Generalist or Specialist Nesters.

PubMed

Araújo, P C S; Lourenço, A P; Raw, A

2016-10-01

Species richness and seasonal abundance of solitary bees were investigated in rocky, montane grassland (campo rupestre) (1180 m asl) and cerrado sensu stricto (680 m asl) in the Biribiri State Park, Diamantina, state of Minas Gerais, Brazil. Three hundred nineteen nest traps of bamboo canes and black cardboard tubes were monthly inspected at each site during 15 months. A total of eight species of bees built 97 nests. Four species were common to both sites. Tetrapedia aff. curvitarsis Friese and Tetrapedia aff. peckoltii Friese were the most abundant at campo rupestre and cerrado s.s., respectively, followed by Centris analis (Fabricius) in campo rupestre and Centris tarsata Smith in cerrado s.s. The nesting peaks occurred in May in campo rupestre and in February in cerrado s.s. Three cuckoo bees and one bee-fly were collected as natural enemies. The findings suggest that differences between the sites were related more to ecological factors (floral resources, natural nest sites) than to the altitudinal difference. The species richness was similar to that in other habitats with open vegetation. We demonstrate the need to use several types of trap-nest to increase the range of species sampled; some species used only one of the two types traps provided. We also comment on the limitations of trap-nests in cerrado vegetation. Most cerrado species of bees are very selective in their choice for a nesting site, but bees that use trap-nests are more generalists.

Organochlorine contaminants in white-faced ibis eggs in southern Texas

USGS Publications Warehouse

Custer, T.W.; Mitchell, C.A.

1989-01-01

White-faced ibis eggs collected from 2 colonies in southern Texas in 1985 had low mean concentrations of DDE. DDD, the only other organochlorine contaminant detected, was found in only 1 of 20 eggs. DDE concentrations in eggs were not significantly correlated with eggshell thickness. Mean DDE concentrations were significantly higher in eggs collected from nests where not all of the remaining eggs hatched than in eggs collected from nests where all the remaining eggs hatched.

Individual variation in prelaying behaviour and the incidence of floor eggs.

PubMed

Cooper, J J; Appleby, M C

1996-05-01

1. Floor eggs are a problem in non-cage systems for laying hens, as they require secondary egg collecting. Failure to lay in a well-defined nest site may also be a welfare problem for the hens, but only if their nesting motivation has been thwarted. We investigated the relationships between a hen's prelaying behaviour and its tendency to lay on the floor by recording the behaviour of 20 hens housed individually in wire cages with single littered nest boxes. 3. Most floor eggs (80%) were laid by the same 6 hens. These 6 "floor-layers" performed more nest seeking behaviour, less nest-building behaviour and less sitting prior to oviposition than the 14 hens that consistently laid in nest boxes. 4. The incidence of floor eggs declined with age. Both nest and floor laying hens performed less nest seeking behaviour with age. Floor layers, however, increased their performance of nesting behaviour, whilst nest layers performed less nesting behaviour with age. 5. Floor laying hens behaved as if they found the nest box less attractive than nest-laying hens; perhaps because they had lower nesting motivation, or perhaps because their nesting motivation was as high, but they less readily perceived the nest box as an appropriate nest site.

A Methodological Review of Statistical Methods for Handling Multilevel Non-Nested Longitudinal Data in Educational Research

ERIC Educational Resources Information Center

Sun, Shuyan; Pan, Wei

2014-01-01

As applications of multilevel modelling in educational research increase, researchers realize that multilevel data collected in many educational settings are often not purely nested. The most common multilevel non-nested data structure is one that involves student mobility in longitudinal studies. This article provides a methodological review of…

Low-loss hollow-core silica fibers with adjacent nested anti-resonant tubes.

PubMed

Habib, Md Selim; Bang, Ole; Bache, Morten

2015-06-29

We report on numerical design optimization of hollow-core anti-resonant fibers with the aim of reducing transmission losses. We show that re-arranging the nested anti-resonant tubes in the cladding to be adjacent has the effect of significantly reducing leakage as well as bending losses, and for reaching high loss extinction ratios between the fundamental mode and higher order modes. We investigate two versions of the proposed design, one optimized for the mid-IR and another scaled down version for the near-IR and compare them in detail with previously proposed anti-resonant fiber designs including nested elements. Our proposed design is superior with respect to obtaining the lowest leakage losses and the bend losses are also much lower than for the previous designs. Leakage losses as low as 0.0015 dB/km and bending losses of 0.006 dB/km at 5 cm bending radius are predicted at the ytterbium lasing wavelength 1.06 µm. When optimizing the higher-order-mode extinction ratio, the low leakage loss is sacrificed to get an effective single-mode behavior of the fiber. We show that the higher-order-mode extinction ratio is more than 1500 in the range 1.0-1.1 µm around the ytterbium lasing wavelength, while in the mid-IR it can be over 100 around λ = 2.94 μm. This is higher than the previously considered structures in the literature using nested tubes.

An illustrated guide to seeds found in nests of the Florida harvester ant, Pogonomyrmex badius

PubMed Central

Domínguez, Daniel J.

2017-01-01

The Florida harvester ant, Pogonomyrmex badius collects the seeds of many plant species and stores them in underground nest chambers for later consumption. Seeds taken from multiple nests in 1989, 2014 and 2015 were separated by size and species and identified through published keys, comparison with herbarium specimens and with identified seed collections. Harvester ants stored at least 58 species of seeds from 20 plant families in their chambers. This paper presents images of each seed species in several aspects, their relative abundance in P. badius nests, their size relative to the smallest, and links to online data and images of the parent plant species, as well as to herbarium specimens. A number of seeds and plant families present at the site were not found in ant nests. These data and images will be valuable for future studies and experiments to untangle the choices the ants make in relation to what the plants and the seasons offer them. PMID:28248988

Molecular forensics in avian conservation: a DNA-based approach for identifying mammalian predators of ground-nesting birds and eggs.

PubMed

Hopken, Matthew W; Orning, Elizabeth K; Young, Julie K; Piaggio, Antoinette J

2016-01-07

The greater sage-grouse (Centrocercus urophasianus) is a ground-nesting bird from the Northern Rocky Mountains and a species at risk of extinction in in multiple U.S. states and Canada. Herein we report results from a proof of concept that mitochondrial and nuclear DNAs from mammalian predator saliva could be non-invasively collected from depredated greater sage-grouse eggshells and carcasses and used for predator species identification. Molecular forensic approaches have been applied to identify predators from depredated remains as one strategy to better understand predator-prey dynamics and guide management strategies. This can aid conservation efforts by correctly identifying predators most likely to impact threatened and endangered species. DNA isolated from non-invasive samples around nesting sites (e.g. fecal or hair samples) is one method that can increase the success and accuracy of predator species identification when compared to relying on nest remains alone. Predator saliva DNA was collected from depredated eggshells and carcasses using swabs. We sequenced two partial fragments of two mitochondrial genes and obtained microsatellite genotypes using canid specific primers for species and individual identification, respectively. Using this multilocus approach we were able to identify predators, at least down to family, from 11 out of 14 nests (79%) and three out of seven carcasses (47%). Predators detected most frequently were canids (86%), while other taxa included rodents, a striped skunk, and cattle. We attempted to match the genotypes of individual coyotes obtained from eggshells and carcasses with those obtained from fecal samples and coyotes collected in the areas, but no genotype matches were found. Predation is a main cause of nest failure in ground-nesting birds and can impact reproduction and recruitment. To inform predator management for ground-nesting bird conservation, accurate identification of predator species is necessary. Considering predation can have a high impact on recruitment, predation events are very difficult to observe, and predator species are difficult to identify visually from nest remains, molecular approaches that reduce the need to observe or handle animals offer an additional tool to better understand predator-prey dynamics at nesting sites.

Arctic foxes, lemmings, and canada goose nest survival at cape Churchill, Manitoba

USGS Publications Warehouse

Reiter, M.E.; Andersen, D.E.

2011-01-01

We examined factors influencing Canada Goose (Branta canadensis interior) annual nest success, including the relative abundance of collared lemmings (Dicrostonyx richardsoni), arctic fox (Alopex lagopus) den occupancy, nest density, and spring phenology using data collected during annual Canada Goose breeding area surveys at Cape Churchill, Manitoba. Nest density and arctic fox den occupancy strongly influenced Canada Goose nest success. High nest density resulted in higher nest success and high den occupancy reduced nest success. Nest success was not influenced by lemming abundance in the current or previous year as predicted by the "bird-lemming" hypothesis. Reducing arctic fox abundance through targeted management increased nest survival of Canada Geese; a result that further emphasizes the importance of arctic fox as nest predators in this system. The spatial distribution of nest predators, at least for dispersed-nesting geese, may be most important for nest survival, regardless of the abundance of small mammals in the local ecosystem. Further understanding of the factors influencing the magnitude and variance in arctic fox abundance in this region, and the spatial scale at which these factors are realized, is necessary to fully explain predator-prey-alternative prey dynamics in this system. ?? 2011 by the Wilson Ornithological Society.

Ground-nesting by the chimpanzees of the Nimba Mountains, Guinea: environmentally or socially determined?

PubMed

Koops, Kathelijne; Humle, Tatyana; Sterck, Elisabeth H M; Matsuzawa, Tetsuro

2007-04-01

The chimpanzees (Pan troglodytes verus) of the Nimba Mountains, Guinea, West Africa, commonly make both elaborate ("night") and simple ("day") nests on the ground. In this study we investigated which factors might influence ground-nesting in this population, and tested two ecological hypotheses: 1) climatic conditions, such as high wind speeds at high altitudes, may deter chimpanzees from nesting in trees; and 2) a lack of appropriate arboreal nesting opportunities may drive the chimpanzees to nest on the ground. In addition to testing these two hypotheses, we explored whether ground-nesting is a sex-linked behavior. Data were collected monthly between August 2003 and May 2004 along transects and ad libitum. To identify the sex of ground-nesting individuals, we used DNA extracted from hair samples. The results showed that the occurrence and distribution of ground nests were not affected by climatic conditions or a lack of appropriate nest trees. Support was found for the notion that ground-nesting is a sex-linked behavior, as males were responsible for building all of the elaborate ground nests and most of the simple ground nests sampled. Elaborate ground nests occurred mostly in nest groups associated with tree nests, whereas simple ground nests usually occurred without tree nests in their vicinity. These results suggest that ground-nesting may be socially, rather than ecologically, determined.

Sandhill crane abundance and nesting ecology at Grays Lake, Idaho

USGS Publications Warehouse

Austin, J.E.; Henry, A.R.; Ball, I.J.

2007-01-01

We examined population size and factors influencing nest survival of greater sandhill cranes (Grus canadensis tabida) at Grays Lake National Wildlife Refuge, Idaho, USA, during 1997-2000. Average local population of cranes from late April to early May, 1998-2000, was 735 cranes, 34% higher than that reported for May 1970-1971. We estimated 228 (SE = 30) nests in the basin core (excluding renests), 14% higher than a 1971 estimate. Apparent nest success in our study (x?? = 60%, n = 519 nests) was lower than reported for Grays Lake 30-50 years earlier. Daily survival rates (DSRs) of all nests averaged 0.9707 (41.2%). The best model explaining nest survival included year and water depth and their interaction. Nest survival was highest (DSR = 0.9827) in 1998 compared with other years (0.9698-0.9707). Nest survival changed little relative to water depth in 1998, when flooding was extensive and alternative prey (microtines) irrupted, but declined markedly with lower water levels in 2000, the driest year studied. Hypotheses relating nest survival to vegetation height, land use (idle, summer grazing, fall grazing), and date were not supported. In a before-after-control-impact design using 12 experimental fields, nest survival differed among years but not among management treatments (idle, fall graze, fall burn, and summer-graze-idle rotation), nor was there an interaction between year and treatments. However, DSRs in fall-burn fields declined from 0.9781 in 1997-1998 to 0.9503 in 1999-2000 (posttreatment). Changes in the predator community have likely contributed to declines in nest success since the 1950s and 1970s. Our results did not support earlier concerns about effects of habitat management practices on crane productivity. Nest survival could best be enhanced by managing spring water levels. Managers should continue censuses during late April to evaluate long-term relationships to habitat conditions and management.

Reproductive ecology of American Oystercatchers nesting on shell rakes

USGS Publications Warehouse

Jodice, Patrick G.R.; Thibault, Janet M.; Collins, S.A.; Spinks, Mark D.; Sanders, Felicia J.

2014-01-01

Degradation of nesting habitat for coastal birds has led to the use of nontraditional nesting habitat. The American Oystercatcher (Haematopus palliatus) is listed as a "Species of High Concern'' by the U. S. Shorebird Conservation Plan and is declining in the southern portion of its U. S. breeding range, where ~ 50% of breeding oystercatchers nest on shell substrate instead of beachfront habitat. We measured daily survival rates during incubation and chick rearing in shell rake habitats over five breeding seasons in the Cape Romain region of South Carolina, USA. Of 354 nesting attempts monitored, 16.1% hatched at least one egg. During incubation, daily survival rate was 0.938, corresponding to 22.8% success to hatching (nest success). For broods, daily survival was 0.991, or 74.0% success from hatching to fledging. Productivity in the Cape Romain region is primarily being lost during the incubation phase, when nests are exposed to overwash and predation. Mobile chicks may, however, be able to avoid flood events or predators by relocating to higher or more protected portions of a shell rake. Based on comparative data for American Oystercatchers from elsewhere in their range, it does not appear that shell rakes in the Cape Romain region are inferior breeding habitat. Our data suggest that conservation actions targeting nest and chick loss from flooding and predation have the greatest opportunity to enhance reproductive success in this core breeding area, and that an assessment of the availability, structure, avian use, and protection status of shell rakes is warranted.

Nest-site characteristics of Glyptemys muhlenbergii (Bog Turtle) in New Jersey and Pennsylvania

USGS Publications Warehouse

Zappalorti, Robert T.; Lovich, Jeffrey E.; Farrell, Ray F.; Torocco, Michael E.

2015-01-01

Nest-site selection can affect both the survival and fitness of female turtles and their offspring. In many turtle species, the nest environment determines the thermal regime during incubation, length of incubation period, sex ratio of the hatchlings, and exposure to predators and other forms of mortality for both mothers and their offspring. Between 1974 and 2012, we collected detailed data on habitat variables at 66 Glyptemys muhlenbergii (Bog Turtle) nests in 9 different bogs, fens, and wetland complexes in New Jersey and Pennsylvania. The nests had a mean elevation above the substrate of 8.2 cm, and many were shallow and located in raised tussocks of grass or sedges. Females covered most nests, but we also observed partially or completely uncovered eggs. Some females deposited eggs in communal nests; we found 4 nests with 2 separate clutches, and 2 nests with 3 clutches. Principal component analysis confirmed the importance of cover and vegetation to nest-site selection in this species. Availability of open, shade-free, wet nesting areas is an important habitat requirement for Bog Turtles.

Neural correlates of nesting behavior in zebra finches (Taeniopygia guttata).

PubMed

Hall, Zachary J; Bertin, Marion; Bailey, Ida E; Meddle, Simone L; Healy, Susan D

2014-05-01

Nest building in birds involves a behavioral sequence (nest material collection and deposition in the nest) that offers a unique model for addressing how the brain sequences motor actions. In this study, we identified brain regions involved in nesting behavior in male and female zebra finches (Taeniopygia guttata). We used Fos immunohistochemistry to quantify production of the immediate early gene protein product Fos (a molecular indicator of neuronal activity) in the brain correlated this expression with the variation in nesting behavior. Using this technique, we found that neural circuitry involved in motor sequencing, social behavior, reward and motivation were active during nesting. Within pairs of nesting birds, the number of times a male picked up or deposited nesting material and the amount of time a female spent in the nest explained the variation in Fos expression in the anterior motor pathway, social behavior network, and reward neural circuits. Identification of the brain regions that are involved in nesting enables us to begin studying the roles of motor sequencing, context, and reward in construction behavior at the neural level. Copyright © 2014 Elsevier B.V. All rights reserved.

Neural correlates of nesting behavior in zebra finches (Taeniopygia guttata)

PubMed Central

Hall, Zachary J.; Bertin, Marion; Bailey, Ida E.; Meddle, Simone L.; Healy, Susan D.

2014-01-01

Nest building in birds involves a behavioral sequence (nest material collection and deposition in the nest) that offers a unique model for addressing how the brain sequences motor actions. In this study, we identified brain regions involved in nesting behavior in male and female zebra finches (Taeniopygia guttata). We used Fos immunohistochemistry to quantify production of the immediate early gene protein product Fos (a molecular indicator of neuronal activity) in the brain correlated this expression with the variation in nesting behavior. Using this technique, we found that neural circuitry involved in motor sequencing, social behavior, reward and motivation were active during nesting. Within pairs of nesting birds, the number of times a male picked up or deposited nesting material and the amount of time a female spent in the nest explained the variation in Fos expression in the anterior motor pathway, social behavior network, and reward neural circuits. Identification of the brain regions that are involved in nesting enables us to begin studying the roles of motor sequencing, context, and reward in construction behavior at the neural level. PMID:24508238

A large accumulation of avian eggs from the late cretaceous of patagonia (Argentina) reveals a novel nesting strategy in mesozoic birds.

PubMed

Fernández, Mariela S; García, Rodolfo A; Fiorelli, Lucas; Scolaro, Alejandro; Salvador, Rodrigo B; Cotaro, Carlos N; Kaiser, Gary W; Dyke, Gareth J

2013-01-01

We report the first evidence for a nesting colony of mesozoic birds on Gondwana: a fossil accumulation in Late Cretaceous rocks mapped and collected from within the campus of the National University of Comahue, Neuquén City, Patagonia (Argentina). Here, Cretaceous ornithothoracine birds, almost certainly Enanthiornithes, nested in an arid, shallow basinal environment among sand dunes close to an ephemeral water-course. We mapped and collected 65 complete, near-complete, and broken eggs across an area of more than 55 m(2). These eggs were laid either singly, or occasionally in pairs, onto a sandy substrate. All eggs were found apparently in, or close to, their original nest site; they all occur within the same bedding plane and may represent the product of a single nesting season or a short series of nesting attempts. Although there is no evidence for nesting structures, all but one of the Comahue eggs were half-buried upright in the sand with their pointed end downwards, a position that would have exposed the pole containing the air cell and precluded egg turning. This egg position is not seen in living birds, with the exception of the basal galliform megapodes who place their eggs within mounds of vegetation or burrows. This accumulation reveals a novel nesting behaviour in Mesozoic Aves that was perhaps shared with the non-avian and phylogenetically more basal troodontid theropods.

A Large Accumulation of Avian Eggs from the Late Cretaceous of Patagonia (Argentina) Reveals a Novel Nesting Strategy in Mesozoic Birds

PubMed Central

Fernández, Mariela S.; García, Rodolfo A.; Fiorelli, Lucas; Scolaro, Alejandro; Salvador, Rodrigo B.; Cotaro, Carlos N.; Kaiser, Gary W.; Dyke, Gareth J.

2013-01-01

We report the first evidence for a nesting colony of Mesozoic birds on Gondwana: a fossil accumulation in Late Cretaceous rocks mapped and collected from within the campus of the National University of Comahue, Neuquén City, Patagonia (Argentina). Here, Cretaceous ornithothoracine birds, almost certainly Enanthiornithes, nested in an arid, shallow basinal environment among sand dunes close to an ephemeral water-course. We mapped and collected 65 complete, near-complete, and broken eggs across an area of more than 55 m2. These eggs were laid either singly, or occasionally in pairs, onto a sandy substrate. All eggs were found apparently in, or close to, their original nest site; they all occur within the same bedding plane and may represent the product of a single nesting season or a short series of nesting attempts. Although there is no evidence for nesting structures, all but one of the Comahue eggs were half-buried upright in the sand with their pointed end downwards, a position that would have exposed the pole containing the air cell and precluded egg turning. This egg position is not seen in living birds, with the exception of the basal galliform megapodes who place their eggs within mounds of vegetation or burrows. This accumulation reveals a novel nesting behaviour in Mesozoic Aves that was perhaps shared with the non-avian and phylogenetically more basal troodontid theropods. PMID:23613776

First Finding of Melanic Sylvatic Triatoma infestans (Hemiptera: Reduviidae) Colonies in the Argentine Chaco

PubMed Central

CEBALLOS, L. A.; PICCINALI, R. V.; BERKUNSKY, I.; KITRON, U.; GÜRTLER, R. E.

2009-01-01

Triatoma infestans (Klug), the most important vector of Chagas disease in southern South America, is a highly domiciliated species with well-known sylvatic foci only in the Bolivian Andean valleys and in the Bolivian Chaco, where melanic insects designated as “dark morphs” were found. After the tentative identification of two melanic bugs collected from parrot nests in a forest reserve in the Argentine Chaco as T. infestans, we conducted an intensive search there using mouse-baited sticky traps in summer 2006 and 2007. Four live T. infestans bugs were collected in trees without parrot nests in 288 trap-nights, whereas no bug was collected from inside trees with active parrot nests in 51 trap-nights. To increase bug captures, hollow tree trunks that recently had had Amazona aestiva (Berlepsch) and Aratinga acuticaudata (Vieillot) parrot nests were treated with insecticide fumigant canisters exhibiting strong knockdown power. Four (22%) of 18 trees were positive for T. infestans with a dark phenotype. A fragment of the mitochondrial gene COI of 8 of the 14 triatomine bugs collected was successfully sequenced and confirmed as T. infestans. Most of the bugs were captured from Aspidosperma quebracho-blanco (Schlechter) hollow tree trunks harboring parrot nests. All of the T. infestans collected from the nearest house located at 10 km from the sylvatic foci displayed normal chromatic characters. The repeated finding of T. infestans in sylvatic habitats, albeit at very low density, shows that this species is capable of maintaining viable sylvatic foci in the absence of human hosts and immigration from domestic populations. These are the first confirmed findings of sylvatic T. infestans colonies in Argentina and of dark morphs in the Argentine Chaco. PMID:19769054

Long-Billed Curlew Breeding Success on Mid-Columbia River National Wildlife Refuges, South-Central Washington and North-Central Oregon, 2007-08

USGS Publications Warehouse

Stocking, Jessica; Elliott-Smith, Elise; Holcomb, Neil; Haig, Susan M.

2010-01-01

Long-billed curlew (Numenius americanus) reproductive success was evaluated on the Mid-Columbia River National Wildlife Refuges of south-central Washington and north-central Oregon during the 2007 and 2008 breeding seasons. Additionally, we assisted the U.S. Fish and Wildlife Service in collecting information on distribution, abundance, and brood habitat for this shorebird species of conservation concern. A total of 32 breeding pairs were located on the refuges in 2007 and 35 pairs were located in 2008. We monitored 17 nests in 2007 and 23 nests in 2008. Curlew pairs were most abundant on Hanford Reach National Monument in 2007 but more nests were located on Umatilla National Wildlife Refuge in both years, with Columbia National Wildlife Refuge supporting few pairs. Nest success was 23.6 percent in 2007 and 32.9 percent in 2008 after taking into account exposure time and combining data for all the refuges. We were unable to detect any relationship between nest success and habitat type or habitat variables measured. However, our study was the first to document use of agricultural fields on the refuge as curlew nest habitat. We collected 39 and 28 brood locations in 2007 and 2008, respectively, and many observations were likely resightings of the same brood. Broods used a similar variety of habitats as nesting curlew and no clear habitat use pattern was detected.

Organochlorine contaminants in white-faced ibis eggs in southern Texas

USGS Publications Warehouse

Custer, T.W.; Mitchell, C.A.

1989-01-01

White-faced Ibis (Plegadis chihi ) eggs collected from two colonies in southern Texas in 1985 had low mean concentrations of DDE (0.14-0.27 ppm wet weight). DDD, the only other organochlorine contaminant detected, was found in only 1 of 20 eggs. DDE concentrations in eggs were not significantly correlated with eggshell thickness. Mean DDE concentrations were significantly higher in eggs collected from nests where not all of the remaining eggs hatched (1.0 ppm) than in eggs collected from nests where all the remaining eggs hatched (0.15 ppm).

Tracking the movements of a post-nesting Southern River Terrapin (Batagur affinis edwardmolli)

NASA Astrophysics Data System (ADS)

Chen, Pelf-Nyok; Wong, Adrian

2015-09-01

A Southern River Terrapin (Batagur affinis edwardmolli) Conservation Project was initiated on one terrapin nesting bank in 2011, following the discovery of a River Terrapin population in the Kemaman River, Terengganu in 2010. Since this project was initiated, Turtle Conservation Society of Malaysia (TCS) was instrumental in the gazettement of three nesting banks along the Kemaman River, from which all River Terrapin eggs are collected for incubation. However, there are at least a dozen other "unprotected" nesting banks along the river, where all eggs were collected for human consumption. This project attempted to determine the movements of a post-nesting River Terrapin, with hopes that it would provide the preliminary baseline information on the utilization of adjacent nesting banks. The solution was a GPS tracking device that transmitted coordinates every hour over cellular networks. Location-based data was sent via Short Message Service (SMS) to our own SMS gateway running on a Raspberry Pi credit-card size computer, which was then logged in a database and presented graphically via Google Maps. It was a complete tracking and monitoring system. This solution enabled researchers to remotely track the movements of a River Terrapin, hence reducing the costs of research. The movements of a post-nesting River Terrapin were tracked for eight days before the battery was drained. On the third day, this River Terrapin ascended an adjacent riverbank and spent less than an hour on the bank, presumably to deposit her remaining eggs. This study confirmed that River Terrapins do utilize other suitable nesting banks if/whenever available. Results from such tracking studies will be used to leverage on the protection of adjacent nesting banks, thus providing greater protection for the critically endangered River Terrapins.

Survey of pathogens in threatened wild red-tailed Amazon parrot (Amazona brasiliensis) nestlings in Rasa Island, Brazil.

PubMed

Vaz, Frederico Fontanelli; Serafini, Patrícia Pereira; Locatelli-Dittrich, Rosangela; Meurer, Rafael; Durigon, Edison Luiz; de Araújo, Jansen; Thomazelli, Luciano Matsumiya; Ometto, Tatiana; Sipinski, Elenise Angelotti Bastos; Sezerban, Rafael Meirelles; Abbud, Maria Cecília; Raso, Tânia Freitas

The red-tailed Amazon parrot (Amazona brasiliensis) is a threatened species of psittacine bird that inhabit coastal regions of Brazil. In view of the threat of this species, the aim of this study was to perform a health evaluation in wild nestlings in Rasa Island, determining the prevalence of enterobacteria and infectious agents according to type of nest. Blood samples were collected from 64 birds and evaluated for antibodies of Chlamydia psittaci by commercial dot-blot ELISA. Cloacal and oropharyngeal swabs samples were collected from 23 birds from artificial wooden nests, 15 birds from PVC nests and 2 birds from natural nests for microbiological analysis. Swab samples were collected from 58 parrots for C. psittaci detection by PCR and from 50 nestlings for Avian Influenza, Newcastle Disease and West Nile viruses' detection analysis by real-time RT-PCR. Ten bacterial genera and 17 species were identified, and the most prevalent were Escherichia coli and Klebsiella oxytoca. There was no influence of the type of nest in the nestlings' microbiota. All samples tested by ELISA and PCR were negative. There is currently insufficient information available about the health of A. brasiliensis and data of this study provide a reference point for future evaluations and aid in conservation plans. Copyright © 2017 Sociedade Brasileira de Microbiologia. Published by Elsevier Editora Ltda. All rights reserved.

Impact of nesting material on mouse body temperature and physiology.

PubMed

Gaskill, Brianna N; Gordon, Christopher J; Pajor, Edmond A; Lucas, Jeffrey R; Davis, Jerry K; Garner, Joseph P

2013-02-17

In laboratories, mice are housed at 20-24 °C, which is below their lower critical temperature (≈30 °C). Thus, mice are potentially cold stressed, which can alter metabolism, immune function, and reproduction. These physiological changes reflect impaired wellbeing, and affect scientific outcomes. We hypothesized that nesting material would allow mice to alleviate cold stress by controlling their thermal microenvironment, thus insulating them, reducing heat loss and thermogenic processes. Naïve C57BL/6, CD-1, and BALB/c mice (24 male and 24 female/strain in groups of 3) were housed in standard cages at 20 °C either with or without 8 g nesting material for 4 weeks. Core body temperature was followed using intraperitoneal radio telemetry. The thermal properties of the nests were assessed using a thermal imaging camera, and related to nest quality. Higher scoring nests were negatively correlated with the mean radiated temperature and were thus more insulating. No effects of nesting material on body temperature were found. CD-1 mice with nesting material had higher end body weights than controls. No effect was seen in the other two strains. Mice with the telemetry implant had larger spleens than controls, possibly indicating an immune response to the implant or low level infection from the surgery. BALB/c mice express less mRNA for the UCP1 protein than mice without nesting material. This indicates that BALB/c's with nesting material do not utilize their brown fat to create heat as readily as controls. Nests can alleviate thermal discomfort by decreasing the amount of radiated heat and reduce the need for non-shivering thermogenesis. However, different strains appear to use different behavioral (through different primary modes of behavioral thermoregulation) and physiological strategies (utilizing thermogenesis to different degrees) to maintain a constant body temperature under cool standard laboratory ambient temperatures. Copyright © 2013 Elsevier Inc. All rights reserved.

Age-specific productivity and nest site characteristics of Cooper's hawks (Accipiter cooperii)

USGS Publications Warehouse

Moore, K.R.; Henny, C.J.

1984-01-01

Nesting Cooper's Hawks (Accipiter cooperii) were studied in northeastern Oregon. Second-year (SY) males did not breed, but 22 percent of the breeding females were SY's. Mean clutch size (P = 0.012) and mean number of young fledged per pair that laid eggs (P < 0.10) were lower for SY females than for adult (after second year [ASY}) females; however, an equal percentage of the eggs (excluding a collected sample egg) yielded fledged young for each age class. Stepwise discriminant analysis suggested differences in structural characteristics of the nest site habitat for ASY and SY females, i.e., SY female nest sites were associated with younger successional stages than ASY female nest sites. Nests of both age groups were built in trees with high crown volume, but ASY females utilized mistletoe (Arceuthobium sp.) for nest structures more frequently (P < 0.01) than SY females.

Compass cues used by a nocturnal bull ant, Myrmecia midas.

PubMed

Freas, Cody A; Narendra, Ajay; Cheng, Ken

2017-05-01

Ants use both terrestrial landmarks and celestial cues to navigate to and from their nest location. These cues persist even as light levels drop during the twilight/night. Here, we determined the compass cues used by a nocturnal bull ant, Myrmecia midas , in which the majority of individuals begin foraging during the evening twilight period. Myrmecia midas foragers with vectors of ≤5   m when displaced to unfamiliar locations did not follow the home vector, but instead showed random heading directions. Foragers with larger home vectors (≥10   m) oriented towards the fictive nest, indicating a possible increase in cue strength with vector length. When the ants were displaced locally to create a conflict between the home direction indicated by the path integrator and terrestrial landmarks, foragers oriented using landmark information exclusively and ignored any accumulated home vector regardless of vector length. When the visual landmarks at the local displacement site were blocked, foragers were unable to orient to the nest direction and their heading directions were randomly distributed. Myrmecia midas ants typically nest at the base of the tree and some individuals forage on the same tree. Foragers collected on the nest tree during evening twilight were unable to orient towards the nest after small lateral displacements away from the nest. This suggests the possibility of high tree fidelity and an inability to extrapolate landmark compass cues from information collected on the tree and at the nest site to close displacement sites. © 2017. Published by The Company of Biologists Ltd.

Development of a Machine Vision Method for the Monitoring of Laying Hens and Detection of Multiple Nest Occupations.

PubMed

Zaninelli, Mauro; Redaelli, Veronica; Luzi, Fabio; Mitchell, Malcolm; Bontempo, Valentino; Cattaneo, Donata; Dell'Orto, Vittorio; Savoini, Giovanni

2018-01-05

Free range systems can improve the welfare of laying hens. However, the access to environmental resources can be partially limited by social interactions, feeding of hens, and productivity, can be not stable and damaging behaviors, or negative events, can be observed more frequently than in conventional housing systems. In order to reach a real improvement of the hens' welfare the study of their laying performances and behaviors is necessary. With this purpose, many systems have been developed. However, most of them do not detect a multiple occupation of the nest negatively affecting the accuracy of data collected. To overcome this issue, a new "nest-usage-sensor" was developed and tested. It was based on the evaluation of thermografic images, as acquired by a thermo-camera, and the performing of patter recognitions on images acquired from the nest interior. The sensor was setup with a "Multiple Nest Occupation Threshold" of 796 colored pixels and a template of triangular shape and sizes of 43 × 33 pixels (high per base). It was tested through an experimental nesting system where 10 hens were reared for a month. Results showed that the evaluation of thermografic images could increase the detection performance of a multiple occupation of the nest and to apply an image pattern recognition technique could allow for counting the number of hens in the nest in case of a multiple occupation. As a consequence, the accuracy of data collected in studies on laying performances and behaviors of hens, reared in a free-range housing system, could result to be improved.

Regime shifts in the northern North Atlantic during the past 6,000 years: A record of seabird population size and precipitation isotopes on Bjørnøya, Svalbard

NASA Astrophysics Data System (ADS)

D'Andrea, W. J.; Hormes, A.; Bakke, J.; Nicolaisen, L.

2015-12-01

The northeastern North Atlantic Ocean, and the Norwegian and Greenland Seas are subject to large hydrographic changes. These variations can influence oceanic heat transport to the Arctic, meridional overturning circulation, and atmospheric circulation patterns and thereby impact global climate patterns. Marine records suggest that numerous large-scale changes in the hydrography of the northern North Atlantic took place during the middle to late Holocene. Here, we report a record of nitrogen and hydrogen isotope measurements from a lake sediment core from Bjørnøya, Svalbard (74.38°N, 19.02°E) that documents major regime shifts in the climate of the northern North Atlantic during the past 6,000 years. Bjørnøya is the nesting ground for one of the largest seabird populations in the North Atlantic. As top predators in the marine ecosystem, seabirds (and their guano) are enriched in 15N; during spring and summer months they deliver this isotopically enriched nitrogen to their nesting area. We developed a record of seabird population changes on Bjørnøya based on the bulk nitrogen isotope composition of sediments in a core collected from lake Ellasjøen. The record reveals multiple multicentennial scale changes in δ15N values (varying between ~8-12‰) that track past changes in the size of seabird populations. From the same sediment core, we also developed a record of δD of precipitation, by measuring δD values of sedimentary n-alkanes. Past intervals with the largest inferred bird populations correspond with the most enriched δD of precipitation, which we interpret to represent a more Atlantic climate. Periods with reduced seabird populations correspond with intervals having more negative δD of precipitation and representing a more Arctic climate. Together, the nitrogen and hydrogen isotope records signify regime shifts in the oceanography, marine ecosystem, and atmospheric circulation of the northern North Atlantic that are related to variations in the strength of the subpolar gyre.

Regime shifts in the Arctic North Atlantic during the Neoglacial revealed by seabirds and precipitation isotopes on Bjørnøya, Svalbard

NASA Astrophysics Data System (ADS)

D'Andrea, William J.; Hormes, Anne; Bakke, Jostein; Nicolaisen, Line

2016-04-01

The northeastern North Atlantic Ocean, and the Norwegian and Greenland Seas are subject to large hydrographic changes. These variations can influence oceanic heat transport to the Arctic, meridional overturning circulation, and atmospheric circulation patterns and thereby impact global climate patterns. Marine records suggest that numerous large-scale changes in the hydrography of the northern North Atlantic took place during the middle to late Holocene. We report a record of nitrogen and hydrogen isotope measurements from a lake sediment core from Bjørnøya, Svalbard (74.38°N, 19.02°E) that documents major regime shifts in the climate of the northern North Atlantic during the past 6,000 years. Bjørnøya is the nesting ground for one of the largest seabird populations in the North Atlantic. As top predators in the marine ecosystem, seabirds (and their guano) are enriched in 15N; during spring and summer months they deliver isotopically enriched nitrogen to nesting areas. We developed a record of seabird population changes on Bjørnøya based on the nitrogen isotope composition of sediments in a core collected from lake Ellasjøen. The record reveals multiple multicentennial scale changes in δ15N values (varying between ~8-12‰) that track past changes in the size of seabird populations. From the same sediment core, we also developed a record of δD of precipitation, using δD values of sedimentary n-alkanes. Past intervals with the largest inferred bird populations correspond with the most enriched δD of precipitation, which we interpret to represent a more Atlantic climate. Periods with reduced seabird populations correspond with intervals with more negative δD of precipitation and representing a more Arctic climate. Together, the nitrogen and hydrogen isotope records signify regime shifts in the oceanography, marine ecosystem, and atmospheric circulation of the northern North Atlantic that are related to variations in the strength of the subpolar gyre.

Snowy Owl (Nyctea scandiaca) reproduction in relation to lemming population cycles on Wrangel Island

Treesearch

Irina E. Menyushina

1997-01-01

Data on Snowy Owl (Nyctea scandiaca) reproduction on Wrangel Island were collected for six seasons from a total of 423 nests. Nest densities ranged from 0.15 to 0.40 nests/km². Mean clutch size for all 6 years was 6.5 (from 5.3 to 8.4) being significantly higher during low lemming season (7.17) (N = 29) than for peak lemming season (6.0, p...

Surgery scheduling optimization considering real life constraints and comprehensive operation cost of operating room.

PubMed

Xiang, Wei; Li, Chong

2015-01-01

Operating Room (OR) is the core sector in hospital expenditure, the operation management of which involves a complete three-stage surgery flow, multiple resources, prioritization of the various surgeries, and several real-life OR constraints. As such reasonable surgery scheduling is crucial to OR management. To optimize OR management and reduce operation cost, a short-term surgery scheduling problem is proposed and defined based on the survey of the OR operation in a typical hospital in China. The comprehensive operation cost is clearly defined considering both under-utilization and overutilization. A nested Ant Colony Optimization (nested-ACO) incorporated with several real-life OR constraints is proposed to solve such a combinatorial optimization problem. The 10-day manual surgery schedules from a hospital in China are compared with the optimized schedules solved by the nested-ACO. Comparison results show the advantage using the nested-ACO in several measurements: OR-related time, nurse-related time, variation in resources' working time, and the end time. The nested-ACO considering real-life operation constraints such as the difference between first and following case, surgeries priority, and fixed nurses in pre/post-operative stage is proposed to solve the surgery scheduling optimization problem. The results clearly show the benefit of using the nested-ACO in enhancing the OR management efficiency and minimizing the comprehensive overall operation cost.

Euschoengastia suzukii (Acari: Trombiculidae): A new species of chigger mite collected from soil samples in the nest burrows of streaked shearwater in Japan.

PubMed

Takahashi, Mamoru; Fukaya, Hajime; Takahashi, Hisae

2005-07-01

Euschoengastia suzukii Takahashi, Fukaya & Takahashi is described and illustrated. The type material was collected from soil samples in the nest burrows of the sea bird streaked shearwater, Calonectris leucomelas (Temminck), living on Mikurajima Island in Tokyo; Oomorijima Island, Oki, Shimane Prefecture; and Awashima Island, Niigata Prefecture, in Japan, indicating that C. leucomelas is the main parasitic host of E. suzukii new species.

A simple, inexpensive video camera setup for the study of avian nest activity

USGS Publications Warehouse

Sabine, J.B.; Meyers, J.M.; Schweitzer, Sara H.

2005-01-01

Time-lapse video photography has become a valuable tool for collecting data on avian nest activity and depredation; however, commercially available systems are expensive (>USA $4000/unit). We designed an inexpensive system to identify causes of nest failure of American Oystercatchers (Haematopus palliatus) and assessed its utility at Cumberland Island National Seashore, Georgia. We successfully identified raccoon (Procyon lotor), bobcat (Lynx rufus), American Crow (Corvus brachyrhynchos), and ghost crab (Ocypode quadrata) predation on oystercatcher nests. Other detected causes of nest failure included tidal overwash, horse trampling, abandonment, and human destruction. System failure rates were comparable with commercially available units. Our system's efficacy and low cost (<$800) provided useful data for the management and conservation of the American Oystercatcher.

Terrestrial nest-building by wild chimpanzees (Pan troglodytes): implications for the tree-to-ground sleep transition in early hominins.

PubMed

Koops, Kathelijne; McGrew, William C; Matsuzawa, Tetsuro; Knapp, Leslie A

2012-07-01

Nest-building is a great ape universal and arboreal nesting in chimpanzees and bonobos suggests that the common ancestor of Pan and Homo also nested in trees. It has been proposed that arboreal nest-building remained the prevailing pattern until Homo erectus, a fully terrestrial biped, emerged. We investigated the unusual occurrence of ground-nesting in chimpanzees (Pan troglodytes), which may inform on factors influencing the tree-to-ground sleep transition in the hominin lineage. We used a novel genetic approach to examine ground-nesting in unhabituated chimpanzees at Seringbara in the Nimba Mountains, Guinea. Previous research showed that ground-nesting at Seringbara was not ecologically determined. Here, we tested a possible mate-guarding function of ground-nesting by analyzing DNA from shed hairs collected from ground nests and tree nests found in close proximity. We examined whether or not ground-nesting was a group-level behavioral pattern and whether or not it occurred in more than one community. We used multiple genetic markers to identify sex and to examine variation in mitochondrial DNA control region (HV1, HV2) sequences. Ground-nesting was a male-biased behavior and males constructed more elaborate ("night") nests than simple ("day") nests on the ground. The mate-guarding hypothesis was not supported, as ground and associated tree nests were built either by maternally-related males or possibly by the same individuals. Ground-nesting was widespread and likely habitual in two communities. We suggest that terrestrial nest-building may have already occurred in arboreally-adapted early hominins before the emergence of H. erectus. Copyright © 2012 Wiley Periodicals, Inc.

Structure and mechanism of diet specialisation: testing models of individual variation in resource use with sea otters

USGS Publications Warehouse

Tinker, M. Tim; Guimarães, Paulo R.; Novak, Mark; Marquitti, Flavia Maria Darcie; Bodkin, James L.; Staedler, Michelle; Bentall, Gena B.; Estes, James A.

2012-01-01

Studies of consumer-resource interactions suggest that individual diet specialisation is empirically widespread and theoretically important to the organisation and dynamics of populations and communities. We used weighted networks to analyze the resource use by sea otters, testing three alternative models for how individual diet specialisation may arise. As expected, individual specialisation was absent when otter density was low, but increased at high-otter density. A high-density emergence of nested resource-use networks was consistent with the model assuming individuals share preference ranks. However, a density-dependent emergence of a non-nested modular network for ‘core’ resources was more consistent with the ‘competitive refuge’ model. Individuals from different diet modules showed predictable variation in rank-order prey preferences and handling times of core resources, further supporting the competitive refuge model. Our findings support a hierarchical organisation of diet specialisation and suggest individual use of core and marginal resources may be driven by different selective pressures.

Changes in gonadal and adrenal steroid levels in the leatherback sea turtle (Dermochelys coriacea) during the nesting cycle.

PubMed

Rostal, D C; Grumbles, J S; Palmer, K S; Lance, V A; Spotila, J R; Paladino, F V

2001-05-01

The reproductive endocrinology of nesting leatherback turtles (Dermochelys coriacea) was studied during the 1996-1997 and 1997-1998 nesting seasons at Los Baulas National Park, Playa Grande, Costa Rica. Blood samples were collected from nesting females throughout the season. Females were observed to nest up to 10 times during the nesting season. Plasma steroids were measured by radioimmunoassay and total plasma calcium was measured by flame atomic absorption spectrophotometry. Plasma testosterone and plasma estradiol levels declined throughout the nesting cycle of the female. Testosterone declined from a mean of 10.18 +/- 0.77 ng/ml at the beginning of the nesting cycle to 1.73 +/- 0.34 ng/ml at the end of the nesting cycle. Estradiol declined in a similar manner, ranging from a mean of 190.95 +/- 16.80 pg/ml at the beginning of the nesting cycle to 76.52 +/- 12.66 pg/ml at the end of the nesting cycle. Plasma progesterone and total calcium levels were relatively constant throughout the nesting cycle. Lack of fluctuation of total calcium levels, ranging from a mean high of 97.46 +/- 11.37 microg/ml to a mean low of 64.85 +/- 11.20 microg/ml, further suggests that vitellogenesis is complete prior to the arrival of the female at the nesting beach. Clutch size (both yolked and yolkless eggs) did not vary over the course of the nesting cycle. Copyright 2001 Academic Press.

Assessing Nesting Status of Green Turtles, Chelonia Mydas in Perak, Malaysia

PubMed Central

Salleh, Sarahaizad Mohd; Sah, Shahrul Anuar Mohd; Chowdhury, Ahmed Jalal Khan

2018-01-01

The nesting of green turtle (Chelonia mydas) was monitored from 1998 untill 2013 along the beaches of Pasir Panjang, Segari, Perak. The objective of the study is to assess the nesting status of green turtles in Perak, Peninsular Malaysia in terms of total nests, eggs, survival hatchings, and density of visitors. A total number of green turtle nests found for 16 years were 1,019 nests and varied from 10 to 220 nests per year. Meanwhile, the sum of eggs collected for 16 years were 107,820 eggs, and varied from 553 to 20,881 eggs per year. The temporal pattern of nesting indicates year-round nesting in Perak in most years within the 16 years period. The peak season of nesting was estimated to occur between May and June. Survival hatchlings varied from 23.33% (2,071 hatchlings) to 55.03% (5,018 hatchlings) from 1998 to 2013. The density of visitors was not uniformly distributed among the years, and shows a sign of decline especially from 2006 onwards. This publication provides basic knowledge of green turtle nesting population in Perak, and would be helpful in upgrading the conservation program in Malaysia. In future, we hope 1) for an increase in manpower to obtain accurate nesting records along the nesting beaches during nocturnal survey and, 2) to include the breeding biology data such as nest placement, emergence hour, and morphological characteristics of green turtle. PMID:29644022

Chemical analyses of ground-water samples from the Rio Grande Valley in the vicinity of Albuquerque, New Mexico, October 1993 through January 1994

USGS Publications Warehouse

Wilkins, D.W.; Schlottmann, J.L.; Ferree, D.M.

1996-01-01

A study was conducted to investigate general ground-water- quality conditions and contaminant locations in the Rio Grande Valley in the vicinity of Albuquerque, New Mexico. Water samples from 36 observation wells in 12 well nests were analyzed. The well nests are located along three roads near the Rio Grande--two well nests near Paseo del Norte, five well nests near Monta?o Road, and five well nests near Rio Bravo Boulevard. The water samples were collected from October 19, 1993, through January 18, 1994. Water-quality types by major-ion composition were calcium bicarbonate (found in most samples), sodium sulfate, calcium sulfate, and calcium sulfate chloride. Nutrients were detected in all but one sample. Ammonia was detected in 34 samples, nitrite in 4 samples, and nitrate in 17 samples. Orthophosphate was detected in 31 samples. Organic carbon was detected in all samples collected. The trace elements arsenic and barium were detected in all samples and zinc in 31 samples. Fourteen samples contained detectable copper. Cadmium was detected in one sample, chromium in two samples, lead in four samples, and selenium in two samples. Mercury and silver were not detected.

Development of a Machine Vision Method for the Monitoring of Laying Hens and Detection of Multiple Nest Occupations

PubMed Central

Redaelli, Veronica; Luzi, Fabio; Mitchell, Malcolm; Bontempo, Valentino; Cattaneo, Donata; Dell’Orto, Vittorio; Savoini, Giovanni

2018-01-01

Free range systems can improve the welfare of laying hens. However, the access to environmental resources can be partially limited by social interactions, feeding of hens, and productivity, can be not stable and damaging behaviors, or negative events, can be observed more frequently than in conventional housing systems. In order to reach a real improvement of the hens’ welfare the study of their laying performances and behaviors is necessary. With this purpose, many systems have been developed. However, most of them do not detect a multiple occupation of the nest negatively affecting the accuracy of data collected. To overcome this issue, a new “nest-usage-sensor” was developed and tested. It was based on the evaluation of thermografic images, as acquired by a thermo-camera, and the performing of patter recognitions on images acquired from the nest interior. The sensor was setup with a “Multiple Nest Occupation Threshold” of 796 colored pixels and a template of triangular shape and sizes of 43 × 33 pixels (high per base). It was tested through an experimental nesting system where 10 hens were reared for a month. Results showed that the evaluation of thermografic images could increase the detection performance of a multiple occupation of the nest and to apply an image pattern recognition technique could allow for counting the number of hens in the nest in case of a multiple occupation. As a consequence, the accuracy of data collected in studies on laying performances and behaviors of hens, reared in a free-range housing system, could result to be improved. PMID:29303981

Application of topography survey on the green sea turtle (Chelonia mydas) conservation

NASA Astrophysics Data System (ADS)

Fan, Yuan-Yu; Lo, Liu-Chih; Peng, Kuan-Chieh

2017-04-01

Taiwan is located in the Western Pacific monsoon region, typhoon is one of the common natural disasters. Taiwan is hit by typhoons 6 times on average each year, and 2016 have 5. Typhoon not only caused the loss of nature environment in Taiwan but also decreased the endangered species- green sea turtle's breeding success rate. In Wangan island, Penghu, green sea turtle nesting beach's slop is too steep to form the dune cliff, block the way which green sea turtle should nesting above the vegetation line. Nesting under the dune cliff is disturbed easily by the swell from typhoon, Leading to the whole nest was emptied or hatching rate decreased due to water content changed. In order to reduce the threat of typhoon on the green sea turtle, and promote the success of green sea turtle reproduction, we used LiDAR(Light Detection And Ranging) to monitor the topographic change of the green sea turtle nesting habitat and compare the invasion and deposition of the green sea turtle nests before and after the occurrence of typhoons. The results showed that the breeding success rate before the typhoon (2016/09/12) was 93%, which was not affected by the swell. The breeding success rate at the higher position after the typhoon was 95%, and under the dune cliff, 10 nests reproduction failed due to the swell changing the sand layer thickness. The production of dune cliffs is formed by the roots of coastal sand-fixation plants. In the past, the residents collected the coastal plants for fuel, after collecting, sparse vegetation is good to form the flat beach, and to promote green sea turtle nesting on the higher position from the disturbance of typhoon. In the future, to protect the success of green sea turtle's reproduction, should increase the human intervention that disturb the nesting beach's vegetation appropriately, Or cutting the roots directly to reduce the dune cliffs before the nesting season, help the green sea turtle nesting in a higher beach, improve the green sea turtle's breeding success rate.

Arboreal nesting as anti-predator adaptation by savanna chimpanzees (Pan troglodytes verus) in southeastern Senegal.

PubMed

Pruetz, J D; Fulton, S J; Marchant, L F; McGrew, W C; Schiel, M; Waller, M

2008-04-01

Chimpanzees (Pan troglodytes) make nests for resting and sleeping, which is unusual for anthropoid primates but common to all great apes. Arboreal nesting has been linked to predation pressure, but few studies have tested the adaptive nature of this behavior. We collected data at two chimpanzee study sites in southeastern Senegal that differed in predator presence to test the hypothesis that elevated sleeping platforms are adaptations for predator defense. At Assirik in the Parc National du Niokolo-Koba, chimpanzees face four species of large carnivore, whereas at Fongoli, outside national park boundaries, humans have exterminated almost all natural predators. We quantified the availability of vegetation at the two sites to test the alternative hypothesis that differences in nesting reflect differences in habitat structure. We also examined possible sex differences in nesting behavior, community demographic differences, seasonality and nest age differences as variables also potentially affecting nest characteristics and nesting behavior between the two sites. Chimpanzees at Fongoli nested at lower heights and farther apart than did chimpanzees at Assirik and sometimes made nests on the ground. The absence of predators outside of the national park may account for the differences in nest characteristics at the two sites, given the similarities in habitat structure between Fongoli and Assirik. However, Fongoli chimpanzees regularly build arboreal nests for sleeping, even under minimal predation pressure, and this requires explanation.

Nesting and foraging behavior of red-winged blackbirds in stormwater wetlands

USGS Publications Warehouse

Sparling, D.W.; Eisemann, J.; Kuenzel, W.

2007-01-01

Stormwater wetlands are a common part of urban and suburban landscapes. These constructed wetlands provide first-order treatment of effluent from roads, parking lots, lawns and other surfaces. They also provide habitat for wetland-associated birds. Thus, there is a concern that birds may be attracted to potentially toxic habitats. This study assesses nesting success and forging behavior of Red-winged Blackbirds (Agelaius phoeniceus) in retention stormwater wetlands based on drainage type. Drainage categories included residential, commercial, and highway sites. Commercial sites had the lowest nesting success and the lowest diversity of invertebrate foods. Mean nest success values for all three types of wetlands, especially for highway drainages, were comparable to published values from natural wetlands. Over two years of study highway ponds collectively served as source populations whereas residential and commercial sites were population sinks in one year and sources in the other. Red-wings using highway sites had the highest foraging efficiency as determined by the frequency and duration of forays. Residential sites had the greatest human disturbance and generally had intermediate-quality habitat and nesting success. We conclude that while stormwater wetlands collect run off and accompanying pollutants, they can still be valuable habitats for nesting birds in urban and suburban areas. We recommend a few management strategies that can increase avian use of these habitats. ?? Springer Science+Business Media, LLC 2007.

Detection of oral HPV infection - Comparison of two different specimen collection methods and two HPV detection methods.

PubMed

de Souza, Marjorie M A; Hartel, Gunter; Whiteman, David C; Antonsson, Annika

2018-04-01

Very little is known about the natural history of oral HPV infection. Several different methods exist to collect oral specimens and detect HPV, but their respective performance characteristics are unknown. We compared two different methods for oral specimen collection (oral saline rinse and commercial saliva kit) from 96 individuals and then analyzed the samples for HPV by two different PCR detection methods (single GP5+/6+ PCR and nested MY09/11 and GP5+/6+ PCR). For the oral rinse samples, the oral HPV prevalence was 10.4% (GP+ PCR; 10% repeatability) vs 11.5% (nested PCR method; 100% repeatability). For the commercial saliva kit samples, the prevalences were 3.1% vs 16.7% with the GP+ PCR vs the nested PCR method (repeatability 100% for both detection methods). Overall the agreement was fair or poor between samples and methods (kappa 0.06-0.36). Standardizing methods of oral sample collection and HPV detection would ensure comparability between future oral HPV studies. Copyright © 2017 Elsevier Inc. All rights reserved.

Time-lapse video sysem used to study nesting gyrfalcons

USGS Publications Warehouse

Booms, Travis; Fuller, Mark R.

2003-01-01

We used solar-powered time-lapse video photography to document nesting Gyrfalcon (Falco rusticolus) food habits in central West Greenland from May to July in 2000 and 2001. We collected 2677.25 h of videotape from three nests, representing 94, 87, and 49% of the nestling period at each nest. The video recorded 921 deliveries of 832 prey items. We placed 95% of the items into prey categories. The image quality was good but did not reveal enough detail to identify most passerines to species. We found no evidence that Gyrfalcons were negatively affected by the video system after the initial camera set-up. The video system experienced some mechanical problems but proved reliable. The system likely can be used to effectively document the food habits and nesting behavior of other birds, especially those delivering large prey to a nest or other frequently used site.

[Application of nested case-control study on safe evaluation of post-marketing traditional Chinese medicine injection].

PubMed

Xiao, Ying; Zhao, Yubin; Xie, Yanming

2011-10-01

The nested case-control study design (or the case-control in a cohort study) is described here as a new study design used in safe evaluation of post-marketing traditional Chinese medicine injection. In the nested case-control study, cases of a disease that occur in a defined cohort are identified and, for each, a specified number of matched controls is selected from among those in the cohort who have not developed the disease by the time of disease occurrence in the case. For many research questions, the nested case-control design potentially offers impressive reductions in costs and efforts of data collection and analysis compared with the full cohort approach, with relatively minor loss in statistical efficiency. The nested case-control design is particularly advantageous for studies in safe evaluation of post-marketing traditional Chinese medicine injection. Some examples of the application of nested case-control study were given.

Tree Resin Composition, Collection Behavior and Selective Filters Shape Chemical Profiles of Tropical Bees (Apidae: Meliponini)

PubMed Central

Leonhardt, Sara D.; Schmitt, Thomas; Blüthgen, Nico

2011-01-01

The diversity of species is striking, but can be far exceeded by the chemical diversity of compounds collected, produced or used by them. Here, we relate the specificity of plant-consumer interactions to chemical diversity applying a comparative network analysis to both levels. Chemical diversity was explored for interactions between tropical stingless bees and plant resins, which bees collect for nest construction and to deter predators and microbes. Resins also function as an environmental source for terpenes that serve as appeasement allomones and protection against predators when accumulated on the bees' body surfaces. To unravel the origin of the bees' complex chemical profiles, we investigated resin collection and the processing of resin-derived terpenes. We therefore analyzed chemical networks of tree resins, foraging networks of resin collecting bees, and their acquired chemical networks. We revealed that 113 terpenes in nests of six bee species and 83 on their body surfaces comprised a subset of the 1,117 compounds found in resins from seven tree species. Sesquiterpenes were the most variable class of terpenes. Albeit widely present in tree resins, they were only found on the body surface of some species, but entirely lacking in others. Moreover, whereas the nest profile of Tetragonula melanocephala contained sesquiterpenes, its surface profile did not. Stingless bees showed a generalized collecting behavior among resin sources, and only a hitherto undescribed species-specific “filtering” of resin-derived terpenes can explain the variation in chemical profiles of nests and body surfaces from different species. The tight relationship between bees and tree resins of a large variety of species elucidates why the bees' surfaces contain a much higher chemodiversity than other hymenopterans. PMID:21858119

Two unusual hepatitis C virus subtypes, 2j and 2q, in Spain: Identification by nested-PCR and sequencing of a NS5B region.

PubMed

Margall, N; March, F; Español, M; Torras, X; Gallego, A; Coll, P

2015-10-01

Many studies have reported the use of the NS5B gene to subtype hepatitis C virus (HCV). Other HCV genes, such as HCV-5' UTR, Core (C) and E1, have also been used. In some studies, NS5B have been used together with 5'-UTR or C genes to improve genotyping results obtained using commercial procedures. Only two studies in Spain have compared molecular techniques versus commercial procedures regarding the efficacy of HCV subtyping. The aim of this study was to determine whether nested PCR and sequencing of a NS5B region was more reliable than commercial procedures to subtype HCV. We analyzed the results of HCV genotyping in [726] serum specimens collected from 2001 to 2013. From 2001 to 2011, we used PCR and INNO-LiPA hybridization or its new version Versant HCV Genotype 2.0 assay (471 samples). From 2012 to 2013, we used nested PCR and sequencing of a NS5B region (255 cases). This method used two pairs of primers to amplify the RNA of the sample converted to DNA by retrotranscription. The amplification product of 270 base pairs was further sequenced. To identify the subtype, the sequences obtained were compared to those in the international database: http://hcv.lanl.gov./content/sequence/, HCV/ToolsOutline.html and Geno2pheno[hcv] http://hcv.bioinf.mpi-inf.mpg.de/index.php. Nested PCR of a NS5B region and sequencing identified all but one subtype (0.4%, 1/255), differentiated all 1a subtypes from 1b subtypes, and characterized all HCV 2-4 subtypes. This approach also distinguished two subtypes, 2j and 2q, that had rarely been detected previously in Spain. However, commercial procedures failed to subtype 12.7% (60/471) of samples and to genotype 0.6% of specimens (3/471). Nested PCR and sequencing of a NS5B region improved the subtyping of HCV in comparison with classical procedures and identified two rare subtypes in Spain: 2j and 2q. However, full length genome sequencing is recommended to confirm HCV 2j and 2q subtypes. Copyright © 2015. Published by Elsevier B.V.

Forecasting range expansion into ecological traps: climate-mediated shifts in sea turtle nesting beaches and human development.

PubMed

Pike, David A

2013-10-01

Some species are adapting to changing environments by expanding their geographic ranges. Understanding whether range shifts will be accompanied by increased exposure to other threats is crucial to predicting when and where new populations could successfully establish. If species overlap to a greater extent with human development under climate change, this could form ecological traps which are attractive to dispersing individuals, but the use of which substantially reduces fitness. Until recently, the core nesting range for the Critically Endangered Kemp's ridley sea turtle (Lepidochelys kempii) was ca. 1000 km of sparsely populated coastline in Tamaulipas, Mexico. Over the past twenty-five years, this species has expanded its range into populated areas of coastal Florida (>1500 km outside the historical range), where nesting now occurs annually. Suitable Kemp's ridley nesting habitat has persisted for at least 140 000 years in the western Gulf of Mexico, and climate change models predict further nesting range expansion into the eastern Gulf of Mexico and northern Atlantic Ocean. Range expansion is 6-12% more likely to occur along uninhabited stretches of coastline than are current nesting beaches, suggesting that novel nesting areas will not be associated with high levels of anthropogenic disturbance. Although the high breeding-site fidelity of some migratory species could limit adaptation to climate change, rapid population recovery following effective conservation measures may enhance opportunities for range expansion. Anticipating the interactive effects of past or contemporary conservation measures, climate change, and future human activities will help focus long-term conservation strategies. © 2013 John Wiley & Sons Ltd.

Information flow, opinion polling and collective intelligence in house-hunting social insects.

PubMed

Franks, Nigel R; Pratt, Stephen C; Mallon, Eamonn B; Britton, Nicholas F; Sumpter, David J T

2002-11-29

The sharing and collective processing of information by certain insect societies is one of the reasons that they warrant the superlative epithet 'super-organisms' (Franks 1989, Am. Sci. 77, 138-145). We describe a detailed experimental and mathematical analysis of information exchange and decision-making in, arguably, the most difficult collective choices that social insects face: namely, house hunting by complete societies. The key issue is how can a complete colony select the single best nest-site among several alternatives? Individual scouts respond to the diverse information they have personally obtained about the quality of a potential nest-site by producing a recruitment signal. The colony then deliberates over (i.e. integrates) different incoming recruitment signals associated with different potential nest-sites to achieve a well-informed collective decision. We compare this process in honeybees and in the ant Leptothorax albipennis. Notwithstanding many differences - for example, honeybee colonies have 100 times more individuals than L. albipennis colonies - there are certain similarities in the fundamental algorithms these societies appear to employ when they are house hunting. Scout honeybees use the full power of the waggle dance to inform their nest-mates about the distance and direction of a potential nest-site (and they indicate the quality of a nest-site indirectly through the vigour of their dance), and yet individual bees perhaps only rarely make direct comparisons of such sites. By contrast, scouts from L. albipennis colonies often compare nest-sites, but they cannot directly inform one another of their estimation of the quality of a potential site. Instead, they discriminate between sites by initiating recruitment sooner to better ones. Nevertheless, both species do make use of forms of opinion polling. For example, scout bees that have formerly danced for a certain site cease such advertising and monitor the dances of others at random. That is, they act without prejudice. They neither favour nor disdain dancers that advocate the site they had formerly advertised or the alternatives. Thus, in general the bees are less well informed than they would be if they systematically monitored dances for alternative sites rather than spending their time reprocessing information they already have. However, as a result of their lack of prejudice, less time overall will be wasted in endless debate among stubborn and potentially biased bees. Among the ants, the opinions of nest-mates are also pooled effectively when scouts use a threshold population of their nest-mates present in a new nest-site as a cue to switch to more rapid recruitment. Furthermore, the ants' reluctance to begin recruiting to poor nest-sites means that more time is available for the discovery and direct comparison of alternatives. Likewise, the retirement of honeybee scouts from dancing for a given site allows more time for other scouts to find potentially better sites. Thus, both the ants and the bees have time-lags built into their decision-making systems that should facilitate a compromise between thorough surveys for good nest-sites and relatively rapid decisions. We have also been able to show that classical mathematical models can illuminate the processes by which colonies are able to achieve decisions that are relatively swift and very well informed.

Information flow, opinion polling and collective intelligence in house-hunting social insects.

PubMed Central

Franks, Nigel R; Pratt, Stephen C; Mallon, Eamonn B; Britton, Nicholas F; Sumpter, David J T

2002-01-01

The sharing and collective processing of information by certain insect societies is one of the reasons that they warrant the superlative epithet 'super-organisms' (Franks 1989, Am. Sci. 77, 138-145). We describe a detailed experimental and mathematical analysis of information exchange and decision-making in, arguably, the most difficult collective choices that social insects face: namely, house hunting by complete societies. The key issue is how can a complete colony select the single best nest-site among several alternatives? Individual scouts respond to the diverse information they have personally obtained about the quality of a potential nest-site by producing a recruitment signal. The colony then deliberates over (i.e. integrates) different incoming recruitment signals associated with different potential nest-sites to achieve a well-informed collective decision. We compare this process in honeybees and in the ant Leptothorax albipennis. Notwithstanding many differences - for example, honeybee colonies have 100 times more individuals than L. albipennis colonies - there are certain similarities in the fundamental algorithms these societies appear to employ when they are house hunting. Scout honeybees use the full power of the waggle dance to inform their nest-mates about the distance and direction of a potential nest-site (and they indicate the quality of a nest-site indirectly through the vigour of their dance), and yet individual bees perhaps only rarely make direct comparisons of such sites. By contrast, scouts from L. albipennis colonies often compare nest-sites, but they cannot directly inform one another of their estimation of the quality of a potential site. Instead, they discriminate between sites by initiating recruitment sooner to better ones. Nevertheless, both species do make use of forms of opinion polling. For example, scout bees that have formerly danced for a certain site cease such advertising and monitor the dances of others at random. That is, they act without prejudice. They neither favour nor disdain dancers that advocate the site they had formerly advertised or the alternatives. Thus, in general the bees are less well informed than they would be if they systematically monitored dances for alternative sites rather than spending their time reprocessing information they already have. However, as a result of their lack of prejudice, less time overall will be wasted in endless debate among stubborn and potentially biased bees. Among the ants, the opinions of nest-mates are also pooled effectively when scouts use a threshold population of their nest-mates present in a new nest-site as a cue to switch to more rapid recruitment. Furthermore, the ants' reluctance to begin recruiting to poor nest-sites means that more time is available for the discovery and direct comparison of alternatives. Likewise, the retirement of honeybee scouts from dancing for a given site allows more time for other scouts to find potentially better sites. Thus, both the ants and the bees have time-lags built into their decision-making systems that should facilitate a compromise between thorough surveys for good nest-sites and relatively rapid decisions. We have also been able to show that classical mathematical models can illuminate the processes by which colonies are able to achieve decisions that are relatively swift and very well informed. PMID:12495514

Factors affecting hatch success of hawksbill sea turtles on Long Island, Antigua, West Indies.

PubMed

Ditmer, Mark Allan; Stapleton, Seth Patrick

2012-01-01

Current understanding of the factors influencing hawksbill sea turtle (Eretmochelys imbricata) hatch success is disparate and based on relatively short-term studies or limited sample sizes. Because global populations of hawksbills are heavily depleted, evaluating the parameters that impact hatch success is important to their conservation and recovery. Here, we use data collected by the Jumby Bay Hawksbill Project (JBHP) to investigate hatch success. The JBHP implements saturation tagging protocols to study a hawksbill rookery in Antigua, West Indies. Habitat data, which reflect the varied nesting beaches, are collected at egg deposition, and nest contents are exhumed and categorized post-emergence. We analyzed hatch success using mixed-model analyses with explanatory and predictive datasets. We incorporated a random effect for turtle identity and evaluated environmental, temporal and individual-based reproductive variables. Hatch success averaged 78.6% (SD: 21.2%) during the study period. Highly supported models included multiple covariates, including distance to vegetation, deposition date, individual intra-seasonal nest number, clutch size, organic content, and sand grain size. Nests located in open sand were predicted to produce 10.4 more viable hatchlings per clutch than nests located >1.5 m into vegetation. For an individual first nesting in early July, the fourth nest of the season yielded 13.2 more viable hatchlings than the initial clutch. Generalized beach section and inter-annual variation were also supported in our explanatory dataset, suggesting that gaps remain in our understanding of hatch success. Our findings illustrate that evaluating hatch success is a complex process, involving multiple environmental and individual variables. Although distance to vegetation and hatch success were inversely related, vegetation is an important component of hawksbill nesting habitat, and a more complete assessment of the impacts of specific vegetation types on hatch success and hatchling sex ratios is needed. Future research should explore the roles of sand structure, nest moisture, and local weather conditions.

Factors Affecting Hatch Success of Hawksbill Sea Turtles on Long Island, Antigua, West Indies

PubMed Central

Ditmer, Mark Allan; Stapleton, Seth Patrick

2012-01-01

Current understanding of the factors influencing hawksbill sea turtle (Eretmochelys imbricata) hatch success is disparate and based on relatively short-term studies or limited sample sizes. Because global populations of hawksbills are heavily depleted, evaluating the parameters that impact hatch success is important to their conservation and recovery. Here, we use data collected by the Jumby Bay Hawksbill Project (JBHP) to investigate hatch success. The JBHP implements saturation tagging protocols to study a hawksbill rookery in Antigua, West Indies. Habitat data, which reflect the varied nesting beaches, are collected at egg deposition, and nest contents are exhumed and categorized post-emergence. We analyzed hatch success using mixed-model analyses with explanatory and predictive datasets. We incorporated a random effect for turtle identity and evaluated environmental, temporal and individual-based reproductive variables. Hatch success averaged 78.6% (SD: 21.2%) during the study period. Highly supported models included multiple covariates, including distance to vegetation, deposition date, individual intra-seasonal nest number, clutch size, organic content, and sand grain size. Nests located in open sand were predicted to produce 10.4 more viable hatchlings per clutch than nests located >1.5 m into vegetation. For an individual first nesting in early July, the fourth nest of the season yielded 13.2 more viable hatchlings than the initial clutch. Generalized beach section and inter-annual variation were also supported in our explanatory dataset, suggesting that gaps remain in our understanding of hatch success. Our findings illustrate that evaluating hatch success is a complex process, involving multiple environmental and individual variables. Although distance to vegetation and hatch success were inversely related, vegetation is an important component of hawksbill nesting habitat, and a more complete assessment of the impacts of specific vegetation types on hatch success and hatchling sex ratios is needed. Future research should explore the roles of sand structure, nest moisture, and local weather conditions. PMID:22802928

Timing of nest vegetation measurement may obscure adaptive significance of nest-site characteristics: A simulation study.

PubMed

McConnell, Mark D; Monroe, Adrian P; Burger, Loren Wes; Martin, James A

2017-02-01

Advances in understanding avian nesting ecology are hindered by a prevalent lack of agreement between nest-site characteristics and fitness metrics such as nest success. We posit this is a result of inconsistent and improper timing of nest-site vegetation measurements. Therefore, we evaluated how the timing of nest vegetation measurement influences the estimated effects of vegetation structure on nest survival. We simulated phenological changes in nest-site vegetation growth over a typical nesting season and modeled how the timing of measuring that vegetation, relative to nest fate, creates bias in conclusions regarding its influence on nest survival. We modeled the bias associated with four methods of measuring nest-site vegetation: Method 1-measuring at nest initiation, Method 2-measuring at nest termination regardless of fate, Method 3-measuring at nest termination for successful nests and at estimated completion for unsuccessful nests, and Method 4-measuring at nest termination regardless of fate while also accounting for initiation date. We quantified and compared bias for each method for varying simulated effects, ranked models for each method using AIC, and calculated the proportion of simulations in which each model (measurement method) was selected as the best model. Our results indicate that the risk of drawing an erroneous or spurious conclusion was present in all methods but greater with Method 2 which is the most common method reported in the literature. Methods 1 and 3 were similarly less biased. Method 4 provided no additional value as bias was similar to Method 2 for all scenarios. While Method 1 is seldom practical to collect in the field, Method 3 is logistically practical and minimizes inherent bias. Implementation of Method 3 will facilitate estimating the effect of nest-site vegetation on survival, in the least biased way, and allow reliable conclusions to be drawn.

Nest visits and capture events affect breeding success of Yellow-billed and Pacific loons

USGS Publications Warehouse

Uher-Koch, Brian D.; Schmutz, Joel A.; Wright, Kenneth G.

2015-01-01

Accurate estimates of breeding success are essential for understanding population dynamics and for managing populations. Unfortunately, research activities to collect these data can negatively impact the breeding success of the study species and bias estimates of breeding success. Despite the potential for negative impacts, few studies have documented the effect of capturing incubating adults on nest survival or compared nest survival following different capture methods. In this study we evaluate the impacts of investigator disturbance associated with captures and nest visits on nest survival of Yellow-billed Loons (Gavia adamsii) and Pacific Loons (Gavia pacifica) in the National Petroleum Reserve-Alaska (NPR-A), an area of conservation concern, in 2011–2013. In an effort to reduce capture-related nest failures, we developed a new suspended dive net technique to catch territorial aquatic birds while off their nests. We then compared nest survival following suspended dive net captures to bow-net trap captures of breeding adult loons. Daily nest survival following bow-net trap or suspended dive net capture was about 30% lower than when adults were not captured. The effect of captures on nest survival was similar between bow-net trap and suspended dive net capture methods. Nest visits without captures also negatively impacted nest survival, although less than captures. If not accounted for, nest visitation biased daily survival rates of nests downward 6%. Effects of investigator disturbance did not differ by species or between years. Our results suggest that any source of disturbance that displaces incubating adult loons could potentially reduce nest survival. To maximize breeding success, human disturbance factors should be limited near loon nests.

A multiscale analysis of nest predation on Least Bell's Vireos (Vireo bellii pusillus)

USGS Publications Warehouse

Kus, Barbara E.; Peterson, Bonnie L.; Deutschman, Douglas H.

2008-01-01

We examined variables influencing nest predation on the endangered Least Bell's Vireo (Vireo bellii pusillus) at three spatial scales to determine what nest-site, habitat, or landscape characteristics affect the likelihood of nest predation and to determine the spatial distribution of predation risk and the variables influencing it. We used MARK to calculate daily survival rates of Least Bell's Vireo nests and applied an information-theoretic approach to evaluate support for logistic regression models of the effect of habitat variables on predation risk. Analysis of data for 195 nests collected during 1999 and 2000 at the San Luis Rey River and Pilgrim Creek in southern California revealed no effect of fine-scale factors, including nest height, supporting plant species, and three measures of nest concealment, on the likelihood of predation. At the intermediate scale, distances to the riparian-habitat edge and to internal gaps in the canopy were unrelated to nest survival. Surrounding land-use type was a poor predictor of predation risk, with the exception of proximity to golf course–park habitat and wetland. Nests within 400 m of golf course–park were only 20% as likely to avoid predation as nests >400 m from this habitat, and nests near wetland were more than twice as likely to survive as nests distant from wetland. Spatially, predation appeared to be random throughout the site, with localized clustering evident in the vicinity of golf course–park and wetland. Our results suggest that the landscape may be the most appropriate scale at which to manage nest predation in this system.

Thermal fluctuation within nests and predicted sex ratio of Morelet's Crocodile.

PubMed

Escobedo-Galván, Armando H; López-Luna, Marco A; Cupul-Magaña, Fabio G

2016-05-01

Understanding the interplay between thermal variations and sex ratio in reptiles with temperature-dependent sex determination is the first step for developing long-term conservation strategies. In case of crocodilians, the information is fragmentary and insufficient for establishing a general framework to consider how thermal fluctuation influence sex determination under natural conditions. The main goal of this study was to analyze thermal variation in nests of Crocodylus moreletii and to discuss the potential implications for predicting offspring sex ratio. The study was carried out at the Centro de Estudios Tecnológicos del Mar N° 2 and at the Sistemas Productivos Cocodrilo, Campeche, Mexico. Data was collected in the nesting season of Morelet's Crocodiles during three consecutive seasons (2007-2009). Thermal fluctuations for multiple areas of the nest chamber were registered by data loggers. We calculate the constant temperature equivalent based on thermal profiles among nests to assess whether there are differences between the nest temperature and its equivalent to constant temperature. We observed that mean nest temperature was only different among nests, while daily thermal fluctuations vary depending on the depth position within the nest chamber, years and nests. The constant temperature equivalent was different among and within nests, but not among survey years. We observed differences between constant temperature equivalent and mean nest temperature both at the top and in the middle of the nest cavities, but were not significantly different at the bottom of nest cavities. Our results enable examine and discuss the relevance of daily thermal fluctuations to predict sex ratio of the Morelet's Crocodile. Copyright © 2016 Elsevier Ltd. All rights reserved.

Spatial fidelity of workers predicts collective response to disturbance in a social insect.

PubMed

Crall, James D; Gravish, Nick; Mountcastle, Andrew M; Kocher, Sarah D; Oppenheimer, Robert L; Pierce, Naomi E; Combes, Stacey A

2018-04-03

Individuals in social insect colonies cooperate to perform collective work. While colonies often respond to changing environmental conditions by flexibly reallocating workers to different tasks, the factors determining which workers switch and why are not well understood. Here, we use an automated tracking system to continuously monitor nest behavior and foraging activity of uniquely identified workers from entire bumble bee (Bombus impatiens) colonies foraging in a natural outdoor environment. We show that most foraging is performed by a small number of workers and that the intensity and distribution of foraging is actively regulated at the colony level in response to forager removal. By analyzing worker nest behavior before and after forager removal, we show that spatial fidelity of workers within the nest generates uneven interaction with relevant localized information sources, and predicts which workers initiate foraging after disturbance. Our results highlight the importance of spatial fidelity for structuring information flow and regulating collective behavior in social insect colonies.

Interseasonal movements of greater sage-grouse, migratory behavior, and an assessment of the core regions concept in Wyoming

USGS Publications Warehouse

Fedy, Bradley C.; Aldridge, Cameron L.; Doherty, Kevin E.; O'Donnell, Michael S.; Beck, Jeffrey L.; Bedrosian, Bryan; Holloran, Matthew J.; Johnson, Gregory D.; Kaczor, Nicholas W.; Kirol, Christopher P.; Mandich, Cheryl A.; Marshall, David; McKee, Gwyn; Olson, Chad; Swanson, Christopher C.; Walker, Brett L.

2012-01-01

Animals can require different habitat types throughout their annual cycles. When considering habitat prioritization, we need to explicitly consider habitat requirements throughout the annual cycle, particularly for species of conservation concern. Understanding annual habitat requirements begins with quantifying how far individuals move across landscapes between key life stages to access required habitats. We quantified individual interseasonal movements for greater sage-grouse (Centrocercus urophasianus; hereafter sage-grouse) using radio-telemetry spanning the majority of the species distribution in Wyoming. Sage-grouse are currently a candidate for listing under the United States Endangered Species Act and Wyoming is predicted to remain a stronghold for the species. Sage-grouse use distinct seasonal habitats throughout their annual cycle for breeding, brood rearing, and wintering. Average movement distances in Wyoming from nest sites to summer-late brood-rearing locations were 8.1 km (SE = 0.3 km; n = 828 individuals) and the average subsequent distances moved from summer sites to winter locations were 17.3 km (SE = 0.5 km; n = 607 individuals). Average nest-to-winter movements were 14.4 km (SE = 0.6 km; n = 434 individuals). We documented remarkable variation in the extent of movement distances both within and among sites across Wyoming, with some individuals remaining year-round in the same vicinity and others moving over 50 km between life stages. Our results suggest defining any of our populations as migratory or non-migratory is innappropriate as individual strategies vary widely. We compared movement distances of birds marked using Global Positioning System (GPS) and very high frequency (VHF) radio marking techniques and found no evidence that the heavier GPS radios limited movement. Furthermore, we examined the capacity of the sage-grouse core regions concept to capture seasonal locations. As expected, we found the core regions approach, which was developed based on lek data, was generally better at capturing the nesting locations than summer or winter locations. However, across Wyoming the sage-grouse breeding core regions still contained a relatively high percentage of summer and winter locations and seem to be a reasonable surrogate for non-breeding habitat when no other information exists. We suggest that conservation efforts for greater sage-grouse implicitly incorporate seasonal habitat needs because of high variation in the amount of overlap among breeding core regions and non-breeding habitat.

Association between PCBs and lower embryonic weight in black-crowned night herons in San Francisco Bay

USGS Publications Warehouse

Hoffman, D.J.; Rattner, B.A.; Bunck, C.M.; Krynitsky, A.J.; Ohlendorf, H.M.; Lowe, Roy W.

1986-01-01

Reproductive problems, including congenital malformations, reduced hatching success, and decreased survival of hatchlings, have been observed in colonial-nesting water birds at the San Francisco Bay National Wildlife Refuge (SFBNWR). Twenty-four black-crowned night heron (Nycticorax nycticorax) eggs were collected from SFBNWR in 1983. Twelve of these were collected from separate nests when late-stage embryos were pipping, and an additional egg was randomly collected from each nest for organochlorine analysis. Overt anomalies and skeletal defects were not apparent. Embryonic weights (with partially absorbed yolk sacs removed) were 15% lower (p lt 0.05) in SFBNWR embryos compared to control embryos from the Patuxent Wildlife Research Center (PWRC). Crown-rump length and femur length were shorter for SFBNWR embryos. The geometric mean polychlorinated biphenyl (PCB) concentration in SFBNWR eggs was 4.1 ppm wet weight, with a range of 0.8-52.0 ppm. A negative correlation (r = - 0.61; p lt 0.05) existed between embryonic weight and log-transformed PCB residues in whole eggs collected from the same nest at SFBNWR, suggesting a possible impact of PCBs on embryonic growth. A correlation with embryonic weight did not occur for DDE (1,1-dichloro-2,2-bis(p-chlorophenyl)ethylene) residues. Liver microsomal aryl hydrocarbon hydroxylase activity was neither significantly elevated nor correlated with PCB, DDE, or PCB plus DDE log-transformed residues. It is unknown whether the apparent association between PCBs and lower weight is persistent through hatching.

Use of mammal manure by nesting burrowing owls: a test of four functional hypotheses

USGS Publications Warehouse

Smith, M.D.; Conway, C.J.

2007-01-01

Animals have evolved an impressive array of behavioural traits to avoid depredation. Olfactory camouflage of conspicuous odours is a strategy to avoid depredation that has been implicated only in a few species of birds. Burrowing owls, Athene cunicularia, routinely collect dried manure from mammals and scatter it in their nest chamber, in the tunnel leading to their nest and at the entrance to their nesting burrow. This unusual behaviour was thought to reduce nest depredation by concealing the scent of adults and juveniles, but a recent study suggests that manure functions to attract arthropod prey. However, burrowing owls routinely scatter other materials in the same way that they scatter manure, and this fact seems to be at odds with both of these hypotheses. Thus, we examined the function of this behaviour by testing four alternative hypotheses. We found no support for the widely cited olfactory-camouflage hypothesis (manure did not lower the probability of depredation), or for the mate-attraction hypothesis (males collected manure after, not before, pair formation). Predictions of the burrow-occupied hypothesis (manure indicates occupancy to conspecifics and thereby reduces agonistic interactions) were supported, but results were not statistically significant. Our results also supported several predictions of the prey-attraction hypothesis. Pitfall traps at sampling sites with manure collected more arthropod biomass (of taxa common in the diet of burrowing owls) than pitfall traps at sampling sites without manure. Scattering behaviour of burrowing owls appears to function to attract arthropod prey, but may also signal occupancy of a burrow to conspecifics. ?? 2006 The Association for the Study of Animal Behaviour.

Improved assay to detect Plasmodium falciparum using an uninterrupted, semi-nested PCR and quantitative lateral flow analysis

PubMed Central

2013-01-01

Background A rapid, non-invasive, and inexpensive point-of-care (POC) diagnostic for malaria followed by therapeutic intervention would improve the ability to control infection in endemic areas. Methods A semi-nested PCR amplification protocol is described for quantitative detection of Plasmodium falciparum and is compared to a traditional nested PCR. The approach uses primers that target the P. falciparum dihydrofolate reductase gene. Results This study demonstrates that it is possible to perform an uninterrupted, asymmetric, semi-nested PCR assay with reduced assay time to detect P. falciparum without compromising the sensitivity and specificity of the assay using saliva as a testing matrix. Conclusions The development of this PCR allows nucleic acid amplification without the need to transfer amplicon from the first PCR step to a second reaction tube with nested primers, thus reducing both the chance of contamination and the time for analysis to < two hours. Analysis of the PCR amplicon yield was adapted to lateral flow detection using the quantitative up-converting phosphor (UCP) reporter technology. This approach provides a basis for migration of the assay to a POC microfluidic format. In addition the assay was successfully evaluated with oral samples. Oral fluid collection provides a simple non-invasive method to collect clinical samples. PMID:23433252

Costs and benefits of late nesting in cliff swallows.

PubMed

Brown, Charles R; Roche, Erin A; O'Brien, Valerie A

2015-02-01

Many organisms of temperate latitudes exhibit declines in reproductive success as the breeding season advances. Experiments can delay the onset of reproduction for early breeders to investigate the consequences of late nesting, but it is rarely possible to observe a distinct second round of nesting in species that normally nest only once. The colonial cliff swallow (Petrochelidon pyrrhonota) is a migratory songbird that has a relatively short breeding season in the western Great Plains, USA, with birds rarely nesting late in the summer. Previous work suggested that ectoparasitism is a primary reason why reproductive success in this species declines over the summer. At colony sites where nests were fumigated to remove ectoparasitic swallow bugs (Oeciacus vicarius), cliff swallows frequently undertook a distinct round of late nesting after previously fledging young that year. Mark-recapture revealed that late-nesting pairs at these colonies produced fewer offspring that survived to the next breeding season, and that survival of late-nesting adults was lower during the next year, relative to pairs nesting earlier in the season. These reproductive costs applied in the absence of ectoparasites and likely reflect other environmental costs of late nesting such as seasonal declines in food availability or a delayed start of fall migration. Despite the costs, the estimated fitness for perennial early-and-late nesters in the absence of ectoparasites was equivalent to that of birds that nested only early in the season. The collective disadvantages of late nesting likely constrain most cliff swallows to raising a single brood in the middle latitudes of North America.

Quantifying avian nest survival along an urbanization gradient using citizen- and scientist-generated data.

PubMed

Ryder, Thomas B; Reitsma, Robert; Evans, Brian; Marra, Peter P

2010-03-01

Despite the increasing pace of urbanization little is known about the factors that limit bird populations (i.e., population-level processes) within the urban/suburban land-use matrix. Here, we report rates of nest survival within the matrix of an urban land-use gradient in the greater Washington, D.C., USA, area for five common songbirds using data collected by scientists and citizens as part of a project called Neighborhood Nestwatch. Using program MARK, we modeled the effects of species, urbanization at multiple spatial scales (canopy cover and impervious surface), and observer (citizen vs. scientist) on nest survival of four open-cup and one cavity-nesting species. In addition, artificial nests were used to determine the relative impacts of specific predators along the land-use gradient. Our results suggest that predation on nests within the land-use matrix declines with urbanization but that there are species-specific differences. Moreover, variation in nest survival among species was best explained by urbanization metrics measured at larger "neighborhood" spatial scales (e.g., 1000 m). Trends were supported by data from artificial nests and suggest that variable predator communities (avian vs. mammalian) are one possible mechanism to explain differential nest survival. In addition, we assessed the quality of citizen science data and show that citizens had no negative effect on nest survival and provided estimates of nest survival comparable to Smithsonian biologists. Although birds nesting within the urban matrix experienced higher nest survival, individuals also faced a multitude of other challenges such as contaminants and invasive species, all of which could reduce adult survival.

Nest survival is influenced by parental behaviour and heterospecifics in a mixed-species colony

USGS Publications Warehouse

Brussee, Brianne E.; Coates, Peter S.; Hothem, Roger L.; Howe, Kristy; Casazza, Michael L.; Eadie, John M.

2016-01-01

Studies of avian nest success often focus on examining influences of variation in environmental and seasonal factors. However, in-depth evaluations can also incorporate variation in individual incubation behaviour to further advance our understanding of avian reproductive ecology. We examined these relationships in colonially nesting Black-crowned Night-Herons Nycticorax nycticorax using intensive video-monitoring methods to quantify incubation behaviours. We modelled nest survival as a function of both extrinsic factors and incubation behaviours over a 3-year period (2010–12) on Alcatraz Island, USA. Model-averaged parameter estimates indicated that nest survival increased as a function of greater incubation constancy (% of time spent incubating eggs within a 24-h period), and average daily precipitation throughout the nesting stage. Common Ravens Corvus corax are the only known nest predator of Night-Herons on Alcatraz Island, as on many other coastal Pacific islands. We also investigated the effects of heterospecific nesting of California Gulls Larus californicus and Western Gulls Larus occidentalis in a mixed-species colony with Night-Herons, based on nesting proximity data collected over a 2-year period (2011–12). This second analysis indicated that, in addition to incubation behaviours, nesting heterospecifics are an important factor for explaining variation in Night-Heron nest survival. However, contrary to our original expectation, we found that Night-Herons experienced increased nest survival with increasing distance from gull colony boundaries. These results may apply to other areas with multiple colonial nesting species and similar predator communities and climatic patterns.

Organochlorine contaminant exposure and reproductive success of Black-Crowned Night Herons (Nycticorax nycticorax) nesting in Baltimore Harbor, Maryland

USGS Publications Warehouse

Rattner, B.A.; McGowan, P.C.; Hatfield, J.S.; Hong, C.-S.; Chu, S.G.

2001-01-01

The declining size of the Baltimore Harbor black-crowned night heron (Nycticorax nycticorax) colony has been hypothesized to be linked to PCB exposure. In 1998, a 'sample egg' was collected from 65 black-crowned night heron nests (each containing > three eggs) for contaminant analysis, and the remaining eggs in these 65 nests, plus four two-egg nests, were monitored for hatching and fledging success. Eggs were also collected from 12 nests at Holland Island, a reference site in southern Chesapeake Bay. Samples were analyzed for 26 organochlorine pesticides and metabolites, and 145 PCB congeners. Pesticide and metabolite concentrations, including p,p'-DDE, were well below thresholds associated with adverse reproductive effects at both sites. Average concentration of total PCBs, 12 Ah receptor-active PCB congeners, and toxic equivalents in eggs from Baltimore Harbor were greater (up to 35- fold) than that observed in Holland Island samples. Overall nest success at the Baltimore Harbor heronry was estimated by the Mayfield method to be 0.74, and the mean number of young fledged/hen was 2.05, which is within published productivity estimates for maintaining a stable black-crowned night heron population. Using logistic regression, no significant relationships were found between organochlorine contaminant concentrations in sample eggs and hatching, fledging, or overall reproductive success. Processes other than poor reproduction (e.g., low post- fledging survival, emigration, habitat degradation) may be responsible for the declining size of the Baltimore Harbor colony.

Detritus cast from heron nests as an indicator of food chain contamination. [Radioactivity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rickard, W.H.; Hedlund, J.D.; Schreckhise, R.G.

Approximately 40 pairs of great blue herons nest in a single colony on the Hanford Reservation in south-central Washington. Over a two-month period in the 1975 nesting season, 170 g/m/sup 2/ of detritus, dry weight, were collected on cheesecloth blankets placed on the ground beneath the nesting colony. Seven gamma-emitting radionuclides commonly associated with airborne debris (fallout) were measured in the heron detritus. Cesium-137 was the most abundant man-induced radionuclide measured in the detritus averaging 18 picocuries per gram dry weight. Regular surveillance of heron detritus appears as a useful way to measure contaminants in heron foods gathered from themore » surrounding environment.« less

ELF communications system ecological monitoring program: Pollinating insect studies

NASA Astrophysics Data System (ADS)

Strickler, Karen; Schriber, J. Mark

1994-11-01

High voltage transmission lines and the earth's and other magnetic fields have been shown to affect honeybee reproduction, survival, orientation, and nest structure. ELY EM fields could have similar effects on native megachilid bees. Two species in the genus Megachile were abundant in artificial nests at experimental and control areas in Dickinson and Iron Counties in Michigan. Data on their nest architecture, nest activity, and emergence/mortality were collected between 1983 and 1993. Eight hypotheses concerning the possible effects of ELY EM fields were considered using these data. The ELY antenna has been fully operational since the summer of 1989. Tests of the hypotheses compare control vs. experimental areas before and after the ELY antenna became fully operational.

Genetic documentation of filial cannibalism in nature

PubMed Central

DeWoody, J. Andrew; Fletcher, Dean E.; Wilkins, S. David; Avise, John C.

2001-01-01

Cannibalism is widespread in natural populations of fishes, where the stomachs of adults frequently contain conspecific juveniles. Furthermore, field observations suggest that guardian males routinely eat offspring from their own nests. However, recent genetic paternity analyses have shown that fish nests often contain embryos not sired by the nest-tending male (because of cuckoldry events, egg thievery, or nest piracy). Such findings, coupled with the fact that several fish species have known capabilities for distinguishing kin from nonkin, raise the possibility that cannibalism by guardian males is directed primarily or exclusively toward unrelated embryos in their nests. Here, we test this hypothesis by collecting freshly cannibalized embryos from the stomachs of several nest-tending darter and sunfish males in nature and determining their genetic parentage by using polymorphic microsatellite markers. Our molecular results clearly indicate that guardian males do indeed consume their own genetic offspring, even when unrelated (foster) embryos are present within the nest. These data provide genetic documentation of filial cannibalism in nature. Furthermore, they suggest that the phenomenon may result, at least in part, from an inability of guardians to differentiate between kin and nonkin within their own nests. PMID:11309508

Coaxial microreactor for particle synthesis

DOEpatents

Bartsch, Michael; Kanouff, Michael P; Ferko, Scott M; Crocker, Robert W; Wally, Karl

2013-10-22

A coaxial fluid flow microreactor system disposed on a microfluidic chip utilizing laminar flow for synthesizing particles from solution. Flow geometries produced by the mixing system make use of hydrodynamic focusing to confine a core flow to a small axially-symmetric, centrally positioned and spatially well-defined portion of a flow channel cross-section to provide highly uniform diffusional mixing between a reactant core and sheath flow streams. The microreactor is fabricated in such a way that a substantially planar two-dimensional arrangement of microfluidic channels will produce a three-dimensional core/sheath flow geometry. The microreactor system can comprise one or more coaxial mixing stages that can be arranged singly, in series, in parallel or nested concentrically in parallel.

Red-tailed hawk dietary overlap with northern goshawks on the Kaibab Plateau, AZ

Treesearch

Angela E. Gatto; Teryl G. Grubb; Carol L. Chambers

2006-01-01

We determined food habits of Red-tailed Hawks (Buteo jamaicensis) for comparison with published information for Northern Goshawks (Accipiter gentilis) to evaluate potential competition on the Kaibab Plateau, Arizona. We collected prey remains and pellets from 42 Red-tailed Hawk nests at the end of the nesting season between August-...

Development and genetic characterization of an Advanced Backcross-Nested Association Mapping (AB-NAM) population of wild × cultivated barley

USDA-ARS?s Scientific Manuscript database

The ability to access alleles from unadapted germplasm collections is a long-standing problem for geneticists and breeders. Here we developed, characterized, and demonstrated the utility of a wild barley advanced backcross-nested association mapping (AB-NAM) population. We developed this population ...

Epipona media cooper (Hymenoptera: Vespidae), a social wasp new to the Brazilian Atlantic Forest.

PubMed

Menezes, Rodolpho S T; Carvalho Filho, Antonio F; Raw, Anthony; Costa, Marco A

2010-01-01

An occupied nest of Epipona media Cooper was discovered and collected in a cabruca (cocoa plantation with native tree cover). This is the first record of E. media from Bahia State. We described the nest structure and compared the adults with the closely related species Epipona tatua Cuvier.

Interactions Increase Forager Availability and Activity in Harvester Ants.

PubMed

Pless, Evlyn; Queirolo, Jovel; Pinter-Wollman, Noa; Crow, Sam; Allen, Kelsey; Mathur, Maya B; Gordon, Deborah M

2015-01-01

Social insect colonies use interactions among workers to regulate collective behavior. Harvester ant foragers interact in a chamber just inside the nest entrance, here called the 'entrance chamber'. Previous studies of the activation of foragers in red harvester ants show that an outgoing forager inside the nest experiences an increase in brief antennal contacts before it leaves the nest to forage. Here we compare the interaction rate experienced by foragers that left the nest and ants that did not. We found that ants in the entrance chamber that leave the nest to forage experienced more interactions than ants that descend to the deeper nest without foraging. Additionally, we found that the availability of foragers in the entrance chamber is associated with the rate of forager return. An increase in the rate of forager return leads to an increase in the rate at which ants descend to the deeper nest, which then stimulates more ants to ascend into the entrance chamber. Thus a higher rate of forager return leads to more available foragers in the entrance chamber. The highest density of interactions occurs near the nest entrance and the entrances of the tunnels from the entrance chamber to the deeper nest. Local interactions with returning foragers regulate both the activation of waiting foragers and the number of foragers available to be activated.

Fibroblast growth factor-10 signals development of von Brunn's nests in the exstrophic bladder

PubMed Central

Eastman, Rocky; Leaf, Elizabeth M.; Zhang, Dianzhong; True, Lawrence D.; Sweet, Robert M.; Seidel, Kristy; Siebert, Joseph R.; Grady, Richard; Mitchell, Michael E.

2010-01-01

von Brunn's nests have long been recognized as precursors of benign lesions of the urinary bladder mucosa. We report here that von Brunn's nests are especially prevalent in the exstrophic bladder, a birth defect that predisposes the patient to formation of bladder cancer. Cells of von Brunn's nest were found to coalesce into a stratified, polarized epithelium which surrounds itself with a capsule-like structure rich in types I, III, and IV collagen. Histocytochemical analysis and keratin profiling demonstrated that nested cells exhibited a phenotype similar, but not identical, to that of urothelial cells of transitional epithelium. Immunostaining and in situ hybridization analysis of exstrophic tissue demonstrated that the FGF-10 receptor is synthesized and retained by cells of von Brunn's nest. In contrast, FGF-10 is synthesized and secreted by mesenchymal fibroblasts via a paracrine pathway that targets basal epithelial cells of von Brunn's nests. Small clusters of 10pRp cells, positive for both FGF-10 and its receptor, were observed both proximal to and inside blood vessels in the lamina propria. The collective evidence points to a mechanism where von Brunn's nests develop under the control of the FGF-10 signal transduction system and suggests that 10pRp cells may be the original source of nested cells. PMID:20719973

Breeding behavior of northern saw-whet owls in Oregon

USGS Publications Warehouse

McCullough, Jenna M.; Conway, Courtney J.

2017-01-01

We know little about the breeding behavior of most nocturnal raptors. Nest attendance and prey delivery rates can be used as indices of relative habitat quality or extent of parental care. We used video cameras to document and observe prey delivery rates, nest attendance and bout durations at two northern saw-whet owl (Aegolius acadicus) nests in two artificial nest boxes in north-central Oregon. We collected 858 hours of video surveillance between 21 March and 01 June 2014. The number of prey deliveries per night increased as the nesting season progressed: 1.25 during laying, 1.33 during incubation, and 4.0 during the nestling phase. Prey was delivered most often between 2100 and 2200. Nest attendance by females was high during pre-laying (97.8%), laying (97.9%) and incubation (98.2%), but decreased during the nestling phase (55.7%). Nest attendance was higher during diurnal hours than nocturnal hours across all nesting phases. Duration of off bouts (recesses) was similar during pre-laying and laying (26 min), decreased during incubation (19 min), then increased during the nestling phase (55 min). One of the nesting attempts was successful and the female abandoned the other clutch 22 days after initiation. The incubation and nestling periods were 30 days each.

Human herpesvirus infections of the central nervous system: laboratory diagnosis based on DNA detection by nested PCR in plasma and cerebrospinal fluid samples.

PubMed

Rimério, Carla Aparecida Tavares; De Oliveira, Renato Souza; de Almeida Bonatelli, Murilo Queiroz; Nucci, Anamarli; Costa, Sandra Cecília Botelho; Bonon, Sandra Helena Alves

2015-04-01

Infections of the central nervous systems (CNS) present a diagnostic problem for which an accurate laboratory diagnosis is essential. Invasive practices, such as cerebral biopsy, have been replaced by obtaining a polymerase chain reaction (PCR) diagnosis using cerebral spinal fluid (CSF) as a reference method. Tests on DNA extracted from plasma are noninvasive, thus avoiding all of the collateral effects and patient risks associated with CSF collection. This study aimed to determine whether plasma can replace CSF in nested PCR analysis for the detection of CNS human herpesvirus (HHV) diseases by analysing the proportion of patients whose CSF nested PCR results were positive for CNS HHV who also had the same organism identified by plasma nested PCR. In this study, CSF DNA was used as the "gold standard," and nested PCR was performed on both types of samples. Fifty-two patients with symptoms of nervous system infection were submitted to CSF and blood collection. For the eight HHV, one positive DNA result-in plasma and/or CSF nested PCR-was considered an active HHV infection, whereas the occurrence of two or more HHVs in the same sample was considered a coinfection. HHV infections were positively detected in 27/52 (51.9%) of the CSF and in 32/52 (61.5%) of the plasma, difference not significant, thus nested PCR can be performed on plasma instead of CSF. In conclusion, this findings suggest that plasma as a useful material for the diagnosis of cases where there is any difficulty to perform a CSF puncture. © 2015 Wiley Periodicals, Inc.

Plasma steroid profiles in nesting loggerhead turtles (Caretta caretta) in Queensland, Australia: relationship to nesting episode and season.

PubMed

Whittier, J M; Corrie, F; Limpus, C

1997-04-01

Plasma levels of four hormones-progesterone (P), testosterone (T), estradiol 17-beta (E2), and corticosterone (B)-were measured in samples taken from nesting female loggerhead turtles (Caretta caretta) by using specific radioimmunoassays. Samples were taken in an early, middle, or late period during the summer nesting season from females at first, second, third, or > fourth nesting episodes, defined as successive within-season nesting events, at Mon Repos Beach, Queensland, Australia. Data on individual patterns of nesting, collected over the past 20 years by the Queensland Turtle Research Project, and the seasonal nesting data, were analyzed with respect to influences on hormonal profiles. Circulating levels of E2 were mostly undetectable, suggesting either that this estrogen is not produced at this time of nesting, or that, perhaps, another estrogen may be present that is not detected by the specific radioimmunoassay. P, T, and B profiles in the nesting females were associated with the individual turtles' progression through successive nesting episodes, with a marked decline in all three hormones by the last (> 4) nesting episode of the season. Nesting episode accounted for significant changes that were related to season, in that nesting episode and season were significantly correlated. These patterns were observed in the population, when singly sampled at each time period or nesting episode, and in individual females sampled repeatedly over time. Moreover, T and B were highly and significantly correlated in females at all nesting episodes and time periods, and in the singly and repeatedly sampled females. The magnitude of change in T and B over time was also highly and significantly correlated in repeatedly sampled females. Together these results suggest the hypothesis that T and B interact over the period of successive nesting and may be involved in reproductive functions such as the mobilization of reserves for egg production in C. caretta.

Nest materials as a source of genetic data for avian ecological studies

USGS Publications Warehouse

Pearce, J.M.; Fields, R.L.; Scribner, K.T.

1997-01-01

We examined the utility of feathers and egg shell membranes, deposited in the nests of Spectacled Eiders (Somateria fischeri), as a source of DNA for genetic studies at both the population and individual level. The potential for feather DNA contamination as a result of female behavioral interactions (e.g. nest parasitism), reuse of nest sites from previous years, or other unknown occurrences was acknowledged and specifically tested. DNA was successfully extracted from both feathers and egg shell membranes and waterfowl microsatellite loci were used to construct individual genotypes. We found no difference in the genotypes obtained from nest feathers or blood of the incubating female. Detection of nest feather contamination was possible with as little as one feather when samples from multiple females were intentionally mixed. Triplicate DNA extractions from 33 nests provided a means of detecting contamination in 3 nests. Egg membranes proved a viable source of offspring DNA and can contribute valuable data to investigations of parentage when assayed jointly with maternal feather DNA. Nest materials provide an efficient, non-invasive method of genetic sampling that can be readily incorporated into field research. However, the natural history traits and mating strategies of a species must be considered during sample collection to identify the possible sources of nest materials (e.g., paternal, maternal, parasite, etc.). Specific experiments should also be designed to test sampling assumptions.

Seasonality in communication and collective decision-making in ants.

PubMed

Stroeymeyt, N; Jordan, C; Mayer, G; Hovsepian, S; Giurfa, M; Franks, N R

2014-04-07

The ability of animals to adjust their behaviour according to seasonal changes in their ecology is crucial for their fitness. Eusocial insects display strong collective behavioural seasonality, yet the mechanisms underlying such changes are poorly understood. We show that nest preference by emigrating Temnothorax albipennis ant colonies is influenced by a season-specific modulatory pheromone that may help tune decision-making according to seasonal constraints. The modulatory pheromone triggers aversion towards low-quality nests and enhances colony cohesion in summer and autumn, but not after overwintering-in agreement with reports that field colonies split in spring and reunite in summer. Interestingly, we show that the pheromone acts by downgrading the perceived value of marked nests by informed and naive individuals. This contrasts with theories of collective intelligence, stating that accurate collective decision-making requires independent evaluation of options by individuals. The violation of independence highlighted here was accordingly shown to increase error rate during emigrations. However, this is counterbalanced by enhanced cohesion and the transmission of valuable information through the colony. Our results support recent claims that optimal decisions are not necessarily those that maximize accuracy. Other criteria-such as cohesion or reward rate-may be more relevant in animal decision-making.

The AVRDC - The World Vegetable Center mungbean (Vigna radiata) core and mini core collections.

PubMed

Schafleitner, Roland; Nair, Ramakrishnan Madhavan; Rathore, Abhishek; Wang, Yen-wei; Lin, Chen-yu; Chu, Shu-hui; Lin, Pin-yun; Chang, Jian-Cheng; Ebert, Andreas W

2015-04-29

Large ex situ germplasm collections generally harbor a wide range of crop diversity. AVRDC--The World Vegetable Center is holding in trust the world's second largest mungbean (Vigna radiata) germplasm collection with more than 6,700 accessions. Screening large collections for traits of interest is laborious and expensive. To enhance the access of breeders to the diversity of the crop, mungbean core and mini core collections have been established. The core collection of 1,481 entries has been built by random selection of 20% of the accessions after geographical stratification and subsequent cluster analysis of eight phenotypic descriptors in the whole collection. Summary statistics, especially the low differences of means, equal variance of the traits in both the whole and core collection and the visual inspection of quantile-quantile plots comparing the variation of phenotypic traits present in both collections indicated that the core collection well represented the pattern of diversity of the whole collection. The core collection was genotyped with 20 simple sequence repeat markers and a mini core set of 289 accessions was selected, which depicted the allele and genotype diversity of the core collection. The mungbean core and mini core collections plus their phenotypic and genotypic data are available for distribution to breeders. It is expected that these collections will enhance the access to biodiverse mungbean germplasm for breeding.

Species associations and habitat influence the range-wide distribution of breeding Canada Geese (Branta canadensis interior) on Western Hudson Bay

USGS Publications Warehouse

Reiter, Matthew E.; Andersen, David E.; Raedeke, Andrew H.; Humburg, Dale D.

2017-01-01

Inter- and intra-specific interactions are potentially important factors influencing the distribution of populations. Aerial survey data, collected during range-wide breeding population surveys for Eastern Prairie Population (EPP) Canada Geese (Branta canadensis interior), 1987–2008, were evaluated to assess factors influencing their nesting distribution. Specifically, associations between nesting Lesser Snow Geese (Chen caerulescens caerulescens) and EPP Canada Geese were quantified; and changes in the spatial distribution of EPP Canada Geese were identified. Mixed-effects Poisson regression models of EPP Canada Goose nest counts were evaluated within a cross-validation framework. The total count of EPP Canada Goose nests varied moderately among years between 1987 and 2008 with no long-term trend; however, the total count of nesting Lesser Snow Geese generally increased. Three models containing factors related to previous EPP Canada Goose nest density (representing recruitment), distance to Hudson Bay (representing brood-habitat), nesting habitat type, and Lesser Snow Goose nest density (inter-specific associations) were the most accurate, improving prediction accuracy by 45% when compared to intercept-only models. EPP Canada Goose nest density varied by habitat type, was negatively associated with distance to coastal brood-rearing areas, and suggested density-dependent intra-specific effects on recruitment. However, a non-linear relationship between Lesser Snow and EPP Canada Goose nest density suggests that as nesting Lesser Snow Geese increase, EPP Canada Geese locally decline and subsequently the spatial distribution of EPP Canada Geese on western Hudson Bay has changed.

Smartphone technologies and Bayesian networks to assess shorebird habitat selection

USGS Publications Warehouse

Zeigler, Sara; Thieler, E. Robert; Gutierrez, Ben; Plant, Nathaniel G.; Hines, Megan K.; Fraser, James D.; Catlin, Daniel H.; Karpanty, Sarah M.

2017-01-01

Understanding patterns of habitat selection across a species’ geographic distribution can be critical for adequately managing populations and planning for habitat loss and related threats. However, studies of habitat selection can be time consuming and expensive over broad spatial scales, and a lack of standardized monitoring targets or methods can impede the generalization of site-based studies. Our objective was to collaborate with natural resource managers to define available nesting habitat for piping plovers (Charadrius melodus) throughout their U.S. Atlantic coast distribution from Maine to North Carolina, with a goal of providing science that could inform habitat management in response to sea-level rise. We characterized a data collection and analysis approach as being effective if it provided low-cost collection of standardized habitat-selection data across the species’ breeding range within 1–2 nesting seasons and accurate nesting location predictions. In the method developed, >30 managers and conservation practitioners from government agencies and private organizations used a smartphone application, “iPlover,” to collect data on landcover characteristics at piping plover nest locations and random points on 83 beaches and barrier islands in 2014 and 2015. We analyzed these data with a Bayesian network that predicted the probability a specific combination of landcover variables would be associated with a nesting site. Although we focused on a shorebird, our approach can be modified for other taxa. Results showed that the Bayesian network performed well in predicting habitat availability and confirmed predicted habitat preferences across the Atlantic coast breeding range of the piping plover. We used the Bayesian network to map areas with a high probability of containing nesting habitat on the Rockaway Peninsula in New York, USA, as an example application. Our approach facilitated the collation of evidence-based information on habitat selection from many locations and sources, which can be used in management and decision-making applications.

Temporal changes in the structure of a plant-frugivore network are influenced by bird migration and fruit availability

PubMed Central

Andresen, Ellen; Díaz-Castelazo, Cecilia

2016-01-01

Background. Ecological communities are dynamic collections whose composition and structure change over time, making up complex interspecific interaction networks. Mutualistic plant–animal networks can be approached through complex network analysis; these networks are characterized by a nested structure consisting of a core of generalist species, which endows the network with stability and robustness against disturbance. Those mutualistic network structures can vary as a consequence of seasonal fluctuations and food availability, as well as the arrival of new species into the system that might disorder the mutualistic network structure (e.g., a decrease in nested pattern). However, there is no assessment on how the arrival of migratory species into seasonal tropical systems can modify such patterns. Emergent and fine structural temporal patterns are adressed here for the first time for plant-frugivorous bird networks in a highly seasonal tropical environment. Methods. In a plant-frugivorous bird community, we analyzed the temporal turnover of bird species comprising the network core and periphery of ten temporal interaction networks resulting from different bird migration periods. Additionally, we evaluated how fruit abundance and richness, as well as the arrival of migratory birds into the system, explained the temporal changes in network parameters such as network size, connectance, nestedness, specialization, interaction strength asymmetry and niche overlap. The analysis included data from 10 quantitative plant-frugivorous bird networks registered from November 2013 to November 2014. Results. We registered a total of 319 interactions between 42 plant species and 44 frugivorous bird species; only ten bird species were part of the network core. We witnessed a noteworthy turnover of the species comprising the network periphery during migration periods, as opposed to the network core, which did not show significant temporal changes in species composition. Our results revealed that migration and fruit richness explain the temporal variations in network size, connectance, nestedness and interaction strength asymmetry. On the other hand, fruit abundance only explained connectance and nestedness. Discussion. By means of a fine-resolution temporal analysis, we evidenced for the first time how temporal changes in the interaction network structure respond to the arrival of migratory species into the system and to fruit availability. Additionally, few migratory bird species are important links for structuring networks, while most of them were peripheral species. We showed the relevance of studying bird–plant interactions at fine temporal scales, considering changing scenarios of species composition with a quantitative network approach. PMID:27330852

Prevalence and composition of marine debris in Brown Booby (Sula leucogaster) nests at Ashmore Reef.

PubMed

Lavers, Jennifer L; Hodgson, Jarrod C; Clarke, Rohan H

2013-12-15

Anthropogenic debris is ubiquitous in the marine environment and has been reported to negatively impact hundreds of species globally. Seabirds are particularly at risk from entanglement in debris due to their habit of collecting food and, in many cases, nesting material off the ocean's surface. We compared the prevalence and composition of debris in nests and along the beach at two Brown Booby (Sula leucogaster) colonies on Ashmore Reef, Timor Sea, a remote area known to contain high densities of debris transported by ocean currents. The proportion of nests with debris varied across islands (range 3-31%), likely in response to the availability of natural nesting materials. Boobies exhibited a preference for debris colour (white and black), but not type. The ephemeral nature of Brown Booby nests on Ashmore Reef may limit their utility as indicators of marine pollution, however monitoring is recommended in light of increasing demand for plastic products. Copyright © 2013 Elsevier Ltd. All rights reserved.

Correlates of nest-defense behavior of common terns

USGS Publications Warehouse

Erwin, R.M.

1988-01-01

Nest-defense behavior was studied at seven Common Tern (Sterna hirundo) colonies in southern coastal New Jersey during June and July 1981. Data were collected weekly on numbers of adults, nests, eggs, and young in relation to the frequency and intensity of dive attacks on a human intruder by nesting terns. I explored the relationships between attack behavior and colony size/density, seasonality, and brood survival. The results provide little support for social facilitation since neither colony size (range 30-250 nests) nor density was related to mean attack frequency; however, in larger colonies, fewer birds participated in dive attacks. Although the intensity of attacks was strongly seasonal, patterns were very different among colonies and peak attack rates did not always coincide with peak hatching periods. Defense levels declined late in the season in most colonies regardless of whether brood survival was high or low. Colonies with individuals that attacked early in the season had higher overall nesting success than in colonies where individuals showed little early season aggression.

Leucophora Satellite Flies (Diptera: Anthomyiidae) as Nest Parasites of Sweat Bees (Hymenoptera: Halictidae) in the Neotropics.

PubMed

Polidori, C; Michelsen, V; Nieves-Aldrey, J L

2015-08-01

The biology of the 10 species of Leucophora (Diptera: Anthomyiidae) recorded in the Neotropics remains unknown. The large majority of the studied species so far are kleptoparasites of bees and wasps. Here, we report the first observations of Leucophora andicola (Bigot) and Leucophora peullae (Malloch) visiting the nests of ground-nesting sweat bees Corynura (Hymenoptera: Halictidae) in Chilean Patagonia. Females of both species perch on small stones or sticks within a dense nest aggregation of the bees and then track pollen-loaded bees in flight with great precision, eventually following them into their nests. The overall behavior closely resembles that observed for many other species of the genus. Excavations of some bee nests returned only two dipteran puparia, possibly of Leucophora, suggesting a low parasitism rate. One male of L. peullae was also collected at the bee aggregation. This is the first report of host association for any Leucophora from the Neotropics and the first report of any anthomyiid fly associated with augochlorine bees.

Effects of Fungicide and Adjuvant Sprays on Nesting Behavior in Two Managed Solitary Bees, Osmia lignaria and Megachile rotundata

PubMed Central

2015-01-01

There is a growing body of empirical evidence showing that wild and managed bees are negatively impacted by various pesticides that are applied in agroecosystems around the world. The lethal and sublethal effects of two widely used fungicides and one adjuvant were assessed in cage studies in California on blue orchard bees, Osmia lignaria, and in cage studies in Utah on alfalfa leafcutting bees, Megachile rotundata. The fungicides tested were Rovral 4F (iprodione) and Pristine (mixture of pyraclostrobin + boscalid), and the adjuvant tested was N-90, a non-ionic wetting agent (90% polyethoxylated nonylphenol) added to certain tank mixtures of fungicides to improve the distribution and contact of sprays to plants. In separate trials, we erected screened cages and released 20 paint-marked females plus 30–50 males per cage to document the behavior of nesting bees under treated and control conditions. For all females in each cage, we recorded pollen-collecting trip times, nest substrate-collecting trip times (i.e., mud for O. lignaria and cut leaf pieces for M. rotundata), cell production rate, and the number of attempts each female made to enter her own or to enter other nest entrances upon returning from a foraging trip. No lethal effects of treatments were observed on adults, nor were there effects on time spent foraging for pollen and nest substrates and on cell production rate. However, Rovral 4F, Pristine, and N-90 disrupted the nest recognition abilities of O. lignaria females. Pristine, N-90, and Pristine + N-90 disrupted nest recognition ability of M. rotundata females. Electroantennogram responses of antennae of O. lignaria females maintained in the laboratory did not differ significantly between the fungicide-exposed and control bees. Our results provide the first empirical evidence that two commonly used fungicides and a non-ionic adjuvant can disrupt nest recognition in two managed solitary bee species. PMID:26274401

Climate change impacts on leatherback turtle pelagic habitat in the Southeast Pacific

NASA Astrophysics Data System (ADS)

Willis-Norton, Ellen; Hazen, Elliott L.; Fossette, Sabrina; Shillinger, George; Rykaczewski, Ryan R.; Foley, David G.; Dunne, John P.; Bograd, Steven J.

2015-03-01

Eastern Pacific populations of the leatherback turtle (Dermochelys coriacea) have declined by over 90% during the past three decades. The decline is primarily attributed to human pressures, including unsustainable egg harvest, development on nesting beaches, and by-catch mortality. In particular, the effects of climate change may impose additional stresses upon already threatened leatherback populations. This study analyzes how the pelagic habitat of Eastern Pacific leatherbacks may be affected by climate change over the next century. This population adheres to a persistent migration pattern; following nesting at Playa Grande, Costa Rica, individuals move rapidly through equatorial currents and into foraging habitat within the oligotrophic South Pacific Gyre. Forty-six nesting females were fitted with satellite tags. Based on the turtle positions, ten environmental variables were sampled along the tracks. Presence/absence habitat models were created to determine the oceanographic characteristics of the preferred turtle habitat. Core pelagic habitat was characterized by relatively low sea surface temperatures and chlorophyll-a. Based on these habitat models, we predicted habitat change using output from the Geophysical Fluid Dynamics Laboratory prototype Earth System Model under the Special Report on Emissions Scenario A2 (business-as-usual). Although the model predicted both habitat losses and gains throughout the region, we estimated that overall the core pelagic habitat of the Eastern Pacific leatherback population will decline by approximately 15% within the next century. This habitat modification might increase pressure on a critically endangered population, possibly forcing distributional shifts, behavioral changes, or even extinction.

A Prototype Nonhydrostatic Regional-to-Global Nested-Grid Atmosphere Model for Medium-range Weather Forecasting

NASA Astrophysics Data System (ADS)

Harris, L.; Lin, S. J.; Zhou, L.; Chen, J. H.; Benson, R.; Rees, S.

2016-12-01

Limited-area convection-permitting models have proven useful for short-range NWP, but are unable to interact with the larger scales needed for longer lead-time skill. A new global forecast model, fvGFS, has been designed combining a modern nonhydrostatic dynamical core, the GFDL Finite-Volume Cubed-Sphere dynamical core (FV3) with operational GFS physics and initial conditions, and has been shown to provide excellent global skill while improving representation of small-scale phenomena. The nested-grid capability of FV3 allows us to build a regional-to-global variable-resolution model to efficiently refine to 3-km grid spacing over the Continental US. The use of two-way grid nesting allows us to reach these resolutions very efficiently, with the operational requirement easily attainable on current supercomputing systems.Even without a boundary-layer or advanced microphysical scheme appropriate for convection-perrmitting resolutions, the effectiveness of fvGFS can be demonstrated for a variety of weather events. We demonstrate successful proof-of-concept simulations of a variety of phenomena. We show the capability to develop intense hurricanes with realistic fine-scale eyewalls and rainbands. The new model also produces skillful predictions of severe weather outbreaks and of organized mesoscale convective systems. Fine-scale orographic and boundary-layer phenomena are also simulated with excellent fidelity by fvGFS. Further expected improvements are discussed, including the introduction of more sophisticated microphysics and of scale-aware convection schemes.

Variation in Local-Scale Edge Effects: Mechanisms and landscape Context

Treesearch

Therese M. Donovan; Peter W. Jones; Elizabeth M. Annand; Frank R. Thompson III

1997-01-01

Ecological processes near habitat edges often differ from processes away from edges. Yet, the generality of "edge effects" has been hotly debated because results vary tremendously. To understand the factors responsible for this variation, we described nest predation and cowbird distribution patterns in forest edge and forest core habitats on 36 randomly...

Ecological succession in the honey bee gut: Shift in Lactobacillus strain dominance during early adult development

USDA-ARS?s Scientific Manuscript database

In many vertebrates, social interactions and nutrition can affect the colonization of gut symbionts across generations. We used next generation sequencing to investigate the effect of nest materials and social environment on the colonization and succession of core hindgut microbiota in workers of t...

Toward Skillful Subseasonal Prediction of North Atlantic Hurricanes with regionally-refined GFDL HiRAM

NASA Astrophysics Data System (ADS)

Gao, K.; Harris, L.; Chen, J. H.; Lin, S. J.

2017-12-01

Skillful subseasonal prediction of hurricane activity (from two weeks to less than a season) is important for early preparedness and reducing the hurricane damage in coastal regions. In this study, we will present evaluations of the performance of GFDL HiRAM (High-Resolution Atmospheric Model) for the simulation and prediction of the North Atlantic hurricane activity on the sub-seasonal time scale. A series of sub-seasonal (30-day duration) retrospective predictions were performed over the years 2000-2014 using two configurations of HiRAM: a) global uniform 25km-resolution grid and b) two-way nested grid with a 8km-resolution nest over North Atlantic. The analysis of hurricane structure from the two sets of simulations indicates the two-way-nesting method is an efficient way to improve the representation of hurricanes in global models: the two-way nested configuration produces realistic hurricane inner-core size and structure, which leads to improved lifetime maximum intensity distribution. Both configurations show very promising performance in the subseasonal hurricane genesis prediction, but the two-way nested configuration shows better performance in the prediction of major hurricane (Categories 3-5) activity because of the improved intensity simulation. We will also present the analysis of how the phase and magnitude of MJO, as well as the initial SST anomaly affect the model's prediction skill.

The possible function of stone ramparts at the nest entrance of the blackstart.

PubMed

Leader; Yom-tov

1998-07-01

Blackstarts, Cercomela melanura, Turdidae, construct a rampart of stones at the entrance to their nests. These ramparts may reach remarkable proportions, containing hundreds of flat rocks. We investigated several hypotheses regarding the function of stone ramparts, by monitoring individually marked blackstarts at the En-Gedi Nature Reserve, Israel. Stones were collected solely by females, who carried them in their beaks, while flying to the nest, at a rate of up to one stone per min, after pair formation had occurred. The number and total weight of stones as well as rampart height showed a highly positive correlation with the size of the nest cavity opening. The rampart decreased the size of the cavity entrance to some nests by as much as 67%, which suggests an antipredator barrier function. Survival rates of eggs and chicks were extremely low and the major cause of reproductive failure was predation. Successful nests tended to be located higher off the ground than predated nests, and often contained fewer stones. Furthermore, larger females in terms of wing and tail length nested in cavities higher off the ground and built smaller ramparts containing lighter stones. An artificial nest predation experiment did not reveal a difference in predation rates between nests with and without stone ramparts. Spiny mice, Acomys sp., were the main egg predators. However, in 37% of nests with ramparts that were predated, the perpetrator flattened the rampart, suggesting that they may serve as a barricade, forcing the predator to invest time in clearing the stones in order to gain access to the nest, and perhaps allowing the nesting female sufficient time to escape. We propose, therefore, that owing to such high nest predation rates, females nesting close to the ground build stone ramparts as an 'early warning' mechanism to prevent themselves from being trapped inside nest cavities and predated. Copyright 1998 The Association for the Study of Animal Behaviour.

Genetic diversity and structure of core collection of winter mushroom (Flammulina velutipes) developed by genomic SSR markers.

PubMed

Liu, Xiao Bin; Li, Jing; Yang, Zhu L

2018-01-01

A core collection is a subset of an entire collection that represents as much of the genetic diversity of the entire collection as possible. The establishment of a core collection for crops is practical for efficient management and use of germplasm. However, the establishment of a core collection of mushrooms is still in its infancy, and no established core collection of the economically important species Flammulina velutipes has been reported. We established the first core collection of F. velutipes , containing 32 strains based on 81 genetically different F. veltuipes strains. The allele retention proportion of the core collection for the entire collection was 100%. Moreover, the genetic diversity parameters (the effective number of alleles, Nei's expected heterozygosity, the number of observed heterozygosity, and Shannon's information index) of the core collection showed no significant differences from the entire collection ( p  > 0.01). Thus, the core collection is representative of the genetic diversity of the entire collection. Genetic structure analyses of the core collection revealed that the 32 strains could be clustered into 6 groups, among which groups 1 to 3 were cultivars and groups 4 to 6 were wild strains. The wild strains from different locations harbor their own specific alleles, and were clustered stringently in accordance with their geographic origins. Genetic diversity analyses of the core collection revealed that the wild strains possessed greater genetic diversity than the cultivars. We established the first core collection of F. velutipes in China, which is an important platform for efficient breeding of this mushroom in the future. In addition, the wild strains in the core collection possess favorable agronomic characters and produce unique bioactive compounds, adding value to the platform. More attention should be paid to wild strains in further strain breeding.

Nesting ecology of Spectacled Eiders Somateria fischeri on the Indigirka River Delta, Russia

USGS Publications Warehouse

Pearce, John M.; Esler, Daniel N.; Degtyarev, Andrei G.

1998-01-01

In 1994 and 1995 we investigated breeding biology and nest site habitat of Spectacled Eiders on two study areas within the coastal fringe of the Indigirka River Delta, Russia (71°20' N, 150°20' E). Spectacled Eiders were first observed on 6 June in both years and nesting commenced by mid-June. Average clutch size declined with later nest initiation dates by 0.10 eggs per day; clutches were larger in 1994 than 1995 and were slightly larger on a coastal island study area compared to an interior area. Nesting success varied substantially between years, with estimates of 1.6% in 1994 and 27.6% in 1995. Total egg loss, through avian or mammalian predation, occurred more frequently than partial egg loss. Partial egg loss was detected in 16 nests and appeared unrelated to nest initiation date or clutch size. We found no difference among survival rates of nests visited weekly, biweekly, and those at which the hen was never flushed, suggesting that researcher presence did not adversely affect nesting success. A comparison of nine habitat variables within each study area revealed little difference between nest sites and a comparable number of randomly located sites, leading us to conclude that Spectacled Eiders nest randomly with respect to most small scale habitat features. We propose that large scale landscape features are more important indicators of nesting habitat as they may afford greater protection from land-based predators, such as the Arctic Fox. Demographic data collected during this study, along with recent conservation measures implemented by the Republic of Sakha (Yakutia), lead us to conclude that there are few threats to the Indigirka River Delta Spectacled Eider population. Presently, the Indigirka River Delta contains the largest concentration of nesting Spectacled Eiders and deserves continued monitoring and conservation.

Predation as a landscape effect: the trading off by prey species between predation risks and protection benefits.

PubMed

Mönkkönen, M; Husby, M; Tornberg, R; Helle, P; Thomson, R L

2007-05-01

1. Predators impose costs on their prey but may also provide benefits such as protection against other (e.g. nest) predators. The optimal breeding location in relation to the distance from a nesting raptor varies so as to minimize the sum of costs of adult and nest predation. We provide a conceptual model to account for variation in the relative predation risks and derive qualitative predictions for how different prey species should respond to the distance from goshawk Accipiter gentilis nests. 2. We test the model predictions using a comprehensive collection of data from northern Finland and central Norway. First, we carried out a series of experiments with artificial bird nests to test if goshawks may provide protection against nest predation. Second, we conducted standard bird censuses and nest-box experiments to detect how the density or territory occupancy of several prey species varies with distance from the nearest goshawk nest. 3. Nest predation rate increased with distance from goshawk nest indicating that goshawks may provide protection for birds' nests against nest predation. Abundance (or probability of presence) of the main prey species of goshawks peaked at intermediate distances from goshawk nests, reflecting the trade-off. The abundance of small songbird species decreased with distance from goshawk nests. The goshawk poses little risk to small songbirds and they may benefit from goshawk proximity in protection against nest predation. Finally, no pattern with distance in pied flycatcher territory (nest box) occupation rate or the onset of egg-laying was detected. This is expected, as flycatchers neither suffer from marked nest predation risk nor are favoured goshawk prey. 4. Our results suggest that territory location in relation to the nest of a predator is a trade-off situation where adult birds weigh the risk of themselves being predated against the benefits accrued from increased nest survival. Prey species appear able to detect and measure alternative predation risks, and respond adaptively. From the prey perspective, the landscape is a mosaic of habitat patches the quality of which varies according to structural and floristic features, but also to the spatial distribution of predators.

Investigating Anomalies in the Output Generated by the Weather Research and Forecasting (WRF) Model

NASA Astrophysics Data System (ADS)

Decicco, Nicholas; Trout, Joseph; Manson, J. Russell; Rios, Manny; King, David

2015-04-01

The Weather Research and Forecasting (WRF) model is an advanced mesoscale numerical weather prediction (NWP) model comprised of two numerical cores, the Numerical Mesoscale Modeling (NMM) core, and the Advanced Research WRF (ARW) core. An investigation was done to determine the source of erroneous output generated by the NMM core. In particular were the appearance of zero values at regularly spaced grid cells in output fields and the NMM core's evident (mis)use of static geographic information at a resolution lower than the nesting level for which the core is performing computation. A brief discussion of the high-level modular architecture of the model is presented as well as methods utilized to identify the cause of these problems. Presented here are the initial results from a research grant, ``A Pilot Project to Investigate Wake Vortex Patterns and Weather Patterns at the Atlantic City Airport by the Richard Stockton College of NJ and the FAA''.

Status of the core and the mini core collections for the U.S. gemrplasm collection of peanut

USDA-ARS?s Scientific Manuscript database

To maximize their usefulness, core and mini core collections should be dynamic. The peanut core collection was developed in the early 1990's, and the mini core was developed in the late 1990's. Research has shown that these collections can be used to improve the efficiency and effectiveness of ide...

Engaging Students in Science: Turtle Nestwatch

ERIC Educational Resources Information Center

Lewis, Elaine; Baudains, Catherine; Mansfield, Caroline

2009-01-01

Involving students in authentic science work is one way to enhance their interest in science. This paper reports a project in which Year 4-7 students actively participated in a study that involved the provision of a suitable nesting site for local turtles. The students collected data on turtle nests at the site and evidence of turtle hatchlings at…

A Nested Analysis for Data Collected from Groups: Making Crowding Research More Efficient

ERIC Educational Resources Information Center

Schiffenbauer, Allen; And Others

1978-01-01

This paper examines the difference between dependent and independent responses and suggest that, for the case of independence, a nested analysis of variance model is appropriate. The advantages of this analytic approach are explained, and conditions are discussed under which more powerful test of treatment effects may be obtained. (Author/MA)

Activity patterns of nesting Mexican Spotted Owls

Treesearch

David K. Delaney; Teryl G. Grubb; Paul Beier

1999-01-01

We collected 2,665 hr of behavioral information using video surveillance on 19 Mexican Spotted Owl (Strix occidentalis lucida) pairs between 25 April and 26 July 1996. Prey deliveries per day increased as the nesting season progressed, with an average of 2.68 prey deliveries during incubation, 4.10 items during brooding, and 4.51 items during the...

Leaf Cutter Ant (Atta cephalotes) Soil Modification and In Situ CO2 Gas Dynamics in a Neotropical Wet Forest

NASA Astrophysics Data System (ADS)

Fernandez Bou, A. S.; Carrasquillo Quintana, O.; Dierick, D.; Harmon, T. C.; Johnson, S.; Schwendenmann, L.; Zelikova, T. J.

2016-12-01

The goal of this work is to advance our understanding of soil carbon cycling in highly productive neotropical wet forests. More specifically, we are investigating the influence of leaf cutter ants (LCA) on soil CO2 gas dynamics in primary and secondary forest soils at La Selva Biological Station, Costa Rica. LCA are the dominant herbivore in tropical Americas, responsible for as much as 50% of the total herbivory. Their presence is increasing and their range is expanding because of forest fragmentation and other human impacts. We installed gas sampling wells in LCA (Atta cephalotes) nest and control sites (non-nests in the same soil and forest settings). The experimental design encompassed land cover (primary and secondary forest) and soil type (residual and alluvial). We collected gas samples monthly over an 18-month period. Several of the LCA nests were abandoned during this period. Nevertheless, we continued to sample these sites for LCA legacy effects. In several of the sites, we also installed sensors to continuously monitor soil moisture content, temperature, and CO2 levels. Within the 18-month period we conducted a 2-month field campaign to collect soil and nest vent CO2 efflux data from 3 of the nest-control pairs. Integrating the various data sets, we observed that for most of the sites nest and control soils behaved similarly during the tropical dry season. However, during the wet season gas well CO2 concentrations increased in the control sites while levels in the nests remained at dry season levels. This outcome suggests that ants modify soil gas transport properties (e.g., tortuosity). In situ time series and efflux sampling campaign data corroborated these findings. Abandoned nest CO2 levels were similar to those of the active nests, supporting the notion of a legacy effect from LCA manipulations. For this work, the period of abandonment was relatively short (several months to 1 year maximum), which appears to be insufficient for estimating the duration effect. Overall, these results demonstrate that LCA exert a significant effect on carbon cycling in rain forest soils.

Clinical application of RT-nested PCR integrated with RFLP in Hantavirus detection and genotyping: a prospective study in Shandong Province, PR China.

PubMed

Liu, Yun-Xi; Zhao, Zhong-Tang; Cao, Wu-Chun; Xu, Xiao-Qun; Suo, Ji-Jiang; Xing, Yu-Bin; Jia, Ning; Du, Ming-Mei; Liu, Bo-Wei; Yao, Yuan

2013-01-01

The aim of the present study was to evaluate the clinical usefulness of applying RT-nested PCR along with RFLP as a method for diagnosis and genotypic differentiation of Hantavirus in the acute-stage sera of HFRS patients as compared to the ELISA technique. A prospective study of patients with suspected HFRS patients was carried out. Sera were collected for serological evaluation by ELISA and RT-nested PCR testing. Primers were selected from the published sequence of the S segment of HTNV strain 76-118 and SEOV strain SR-11, which made it possible to obtain an amplicon of 403 bp by RT-nested PCR. The genotypic differentiations of the RT-nested PCR amplicons were carried out by RFLP. Sequence analyses of the amplicons were used to confirm the accuracy of the results obtained by RFLP. Of the 48 acute-stage sera from suspected HFRS patients, 35 were ELISA-positive while 41 were positive by RT-nested PCR. With Hind III and Hinf I, RFLP profiles of the RT-nested PCR amplicons of the 41 positive sera exhibited two patterns. 33 had RFLP profiles similar to the reference strain R22, and thus belonged to the SEOV type. The other 8 samples which were collected during October-December had RFLP profiles similar to the reference strain 76-118, and thus belonged to the HTNV type. Sequence phylogenetic analysis of RT-nested PCR amplicons revealed sdp1, sdp2 YXL-2008, and sdp3 as close relatives of HTNV strain 76-118, while sdp22 and sdp37 as close relatives of SEOV strain Z37 and strain R22 located in two separate clusters in the phylogenetic tree. These results were identical to those acquired by RFLP. RT-nested PCR integrated with RFLP was a rapid, simple, accurate method for detecting and differentiating the genotypes of Hantavirus in the acute-stage sera of suspected HFRS patients. In Shandong province, the main genotypes of Hantavirus belonged to the SEOV types, while the HTNV types were observed during the autumn-winter season.

[Application of Nested PCR in the Diagnosis of Imported Plasmodium Ovale Infection].

PubMed

Huang, Bing-cheng; Xu, Chao; Li, Jin; Xiao, Ting; Yin, Kun; Liu, Gong-zhen; Wang, Wei-yan; Zhao, Gui-hua; Wei, Yan-bin; Wang, Yong-bin; Zhao, Chang-lei; Wei, Qing-kuan

2015-02-01

To identity Plasmodium ovale infection by 18S rRNA gene nested PCR. Whole blood and filter paper blood samples of malaria patients in Shandong Province were collected during 2012-2013. The parasites were observed under a microscope with Giemsa staining. The genome DNA of blood samples were extracted as PCR templates. Genus- and species-specific primers were designed according to the Plasmodium 18S rRNA gene sequences. Plasmodium ovale-positive specimens were identified by nested PCR as well as verified by sequencing. There were 7 imported cases of P. ovale infection in the province during 2012-2013. Nested PCR results showed that the P. ovale specific band (800 bp) was amplified in all the 7 specimens. Blast results indicated that the PCR products were consistent with the Plasmodium ovale reference sequence in GenBank. Seven imported cases of ovale malaria in Shandong Province in 2012-2013 are confirmed by nested PCR.

First record of interspecific breeding of Least Bell's Vireo and White-eyed Vireo

USGS Publications Warehouse

Blundell, Melissa A.; Kus, Barbara E.

2011-01-01

We provide the first known documentation of a male Least Bell's Vireo (Vireo bellii pusillus) breeding with a female White-eyed Vireo (V. griseus) and the first report of a White-eyed Vireo breeding in California at the San Luis Rey River, Oceanside, San Diego County. We discovered the pair building a nest on 12 May 2010. The female laid four eggs, and the pair successfully raised and fledged four nestlings. We collected DNA samples from each nestling and the female during the nestling stage and banded them with a numbered federal leg band for future identification. We obtained detailed nest measurements after fledging and monitored the territory for further nesting attempts. No additional nesting attempts were detected.

Usefulness of in-house PCR methods for hepatitis B virus DNA detection.

PubMed

Portilho, Moyra Machado; Baptista, Marcia Leite; da Silva, Messias; de Sousa, Paulo Sérgio Fonseca; Lewis-Ximenez, Lia Laura; Lampe, Elisabeth; Villar, Livia Melo

2015-10-01

The aim of the present study was to evaluate the performance of three in-house PCR techniques for HBV DNA detection and compare it with commercial quantitative methods to evaluate the usefulness of in-house methods for HBV diagnosis. Three panels of HBsAg reactive sera samples were evaluated: (i) 50 samples were examined using three methods for in-house qualitative PCR and the Cobas Amplicor HBV Monitor Assay; (ii) 87 samples were assayed using in-house semi-nested PCR and the Cobas TaqMan HBV test; (iii) 11 serial samples obtained from 2 HBV-infected individuals were assayed using the Cobas Amplicor HBV test and semi-nested PCR. In panel I, HBV DNA was detected in 44 samples using the Cobas Amplicor HBV test, 42 samples using semi-nested PCR (90% concordance with Cobas Amplicor), 22 samples using PCR for the core gene (63.6% concordance) and 29 samples using single-round PCR for the pre-S/S gene (75% concordance). In panel II, HBV DNA was quantified in 78 of the 87 HBsAg reactive samples using Cobas TaqMan but 52 samples using semi-nested PCR (67.8% concordance). HBV DNA was detected in serial samples until the 17th and 26th week after first donation using in-house semi-nested PCR and the Cobas Amplicor HBV test, respectively. In-house semi-nested PCR presented adequate concordance with commercial methods as an alternative method for HBV molecular diagnosis in low-resource settings. Copyright © 2015 Elsevier B.V. All rights reserved.

The use of singleplex and nested PCR to detect Batrachochytrium dendrobatidis in free-living frogs.

PubMed

Coutinho, Selene Dall'Acqua; Burke, Julieta Catarina; de Paula, Catia Dejuste; Rodrigues, Miguel Trefaut; Catão-Dias, José Luiz

2015-06-01

Many microorganisms are able to cause diseases in amphibians, and in the past few years one of the most reported has been Batrachochytrium dendrobatidis. This fungus was first reported in Brazil in 2005; following this, other reports were made in specimens deposited in museum collections, captive and free-living frogs. The aim of this study was to compare singleplex and nested-PCR techniques to detect B. dendrobatidis in free-living and apparently healthy adult frogs from the Brazilian Atlantic Forest. The sample collection area was a protected government park, with no general entrance permitted and no management of the animals there. Swabs were taken from the skin of 107 animals without macroscopic lesions and they were maintained in ethanol p.a. Fungal DNA was extracted and identification of B. dendrobatidis was performed using singleplex and nested-PCR techniques, employing specific primers sequences. B. dendrobatidis was detected in 61/107 (57%) and 18/107 (17%) animals, respectively by nested and singleplex-PCR. Nested-PCR was statistically more sensible than the conventional for the detection of B. dendrobatidis (Chi-square = 37.1; α = 1%) and the agreement between both techniques was considered just fair (Kappa = 0.27). The high prevalence obtained confirms that these fungi occur in free-living frogs from the Brazilian Atlantic Forest with no macroscopic lesions, characterizing the state of asymptomatic carrier. We concluded that the nested-PCR technique, due to its ease of execution and reproducibility, can be recommended as one of the alternatives in epidemiological surveys to detect B. dendrobatidis in healthy free-living frog populations.

The Influences of Soil Characteristics on Nest-Site Selection in Painted Turtles (Chrysemys picta)

NASA Astrophysics Data System (ADS)

Page, R.

2017-12-01

A variety of animals dig nests and lay their eggs in soil, leaving them to incubate and hatch without assistance from the parents. Nesting habitat is important for these organisms many of which exhibit temperature dependent sex determination (TSD) whereby the incubation temperature determines the sex of each hatchling. However, suitable nesting habitat may be limited due to anthropogenic activities and global temperature increases. Soil thermal properties are critical to these organisms and are positively correlated with water retention and soil carbon; carbon-rich soils result in higher incubation temperatures. We investigated nest-site selection in painted turtles (Chrysemys picta) inhabiting an anthropogenic pond in south central Pennsylvania. We surveyed for turtle nests and documented location, depth, width, temperature, canopy coverage, clutch size, and hatch success for a total of 31 turtle nests. To address the influence of soil carbon and particle size on nest selection, we analyzed samples collected from: 1) actual nests that were depredated, 2) false nests, incomplete nests aborted during digging prior to nest completion, and 3) randomized locations. Soil samples were separated into coarse, medium, and fine grain size fractions through a stack of sieves. Samples were combusted in a total carbon analyzer to measure weight percent organic carbon. We found that anthropogenic activity at this site has created homogenous, sandy, compacted soils at the uppermost layer that may limit females' access to appropriate nesting habitat. Turtle nesting activity was limited to a linear region north of the pond and was constrained by an impassable rail line. Relative to other studies, turtle nests were notably shallow (5.8±0.9 cm) and placed close to the pond. Compared to false nests and random locations, turtle-selected sites averaged greater coarse grains (35% compared to 20.24 and 20.57%) and less fine grains (47% compared to 59 and 59, respectively). Despite remarkably high soil carbon along the rail line (47.08%) turtles nested here with slightly higher hatch success. We suggest that the turtles are limited to sandy, compact soils with low heat capacities and may compensate for this by also nesting adjacent to the rail line where high soil carbon could increase incubation temperatures.

Quality of core collections for effective utilisation of genetic resources review, discussion and interpretation.

PubMed

Odong, T L; Jansen, J; van Eeuwijk, F A; van Hintum, T J L

2013-02-01

Definition of clear criteria for evaluation of the quality of core collections is a prerequisite for selecting high-quality cores. However, a critical examination of the different methods used in literature, for evaluating the quality of core collections, shows that there are no clear guidelines on the choices of quality evaluation criteria and as a result, inappropriate analyses are sometimes made leading to false conclusions being drawn regarding the quality of core collections and the methods to select such core collections. The choice of criteria for evaluating core collections appears to be based mainly on the fact that those criteria have been used in earlier publications rather than on the actual objectives of the core collection. In this study, we provide insight into different criteria used for evaluating core collections. We also discussed different types of core collections and related each type of core collection to their respective evaluation criteria. Two new criteria based on genetic distance are introduced. The consequences of the different evaluation criteria are illustrated using simulated and experimental data. We strongly recommend the use of the distance-based criteria since they not only allow the simultaneous evaluation of all variables describing the accessions, but they also provide intuitive and interpretable criteria, as compared with the univariate criteria generally used for the evaluation of core collections. Our findings will provide genebank curators and researchers with possibilities to make informed choices when creating, comparing and using core collections.

Landscape alterations influence differential habitat use of nesting buteos and ravens within sagebrush ecosystem: implications for transmission line development

USGS Publications Warehouse

Coates, Peter S.; Howe, Kristy B.; Casazza, Michael L.; Delehanty, David J.

2014-01-01

A goal in avian ecology is to understand factors that influence differences in nesting habitat and distribution among species, especially within changing landscapes. Over the past 2 decades, humans have altered sagebrush ecosystems as a result of expansion in energy production and transmission. Our primary study objective was to identify differences in the use of landscape characteristics and natural and anthropogenic features by nesting Common Ravens (Corvus corax) and 3 species of buteo (Swainson's Hawk [Buteo swainsoni], Red-tailed Hawk [B. jamaicensis], and Ferruginous Hawk [B. regalis]) within a sagebrush ecosystem in southeastern Idaho. During 2007–2009, we measured multiple environmental factors associated with 212 nest sites using data collected remotely and in the field. We then developed multinomial models to predict nesting probabilities by each species and predictive response curves based on model-averaged estimates. We found differences among species related to nesting substrate (natural vs. anthropogenic), agriculture, native grassland, and edge (interface of 2 cover types). Most important, ravens had a higher probability of nesting on anthropogenic features (0.80) than the other 3 species (Artemisia spp.), favoring increased numbers of nesting ravens and fewer nesting Ferruginous Hawks. Our results indicate that habitat alterations, fragmentation, and forthcoming disturbances anticipated with continued energy development in sagebrush steppe ecosystems can lead to predictable changes in raptor and raven communities.

Nesting biology of Paravespa rex (von Schulthess 1924) (Hymenoptera: Vespidae: Eumeninae) in the Crimea, Ukraine.

PubMed

Fateryga, Alexander V; Ivanov, Sergey P

2013-01-01

Paravespa rex is the only species of the wasp genus Paravespa that occurs in Europe. Females of this species nest in clay loam soil of proluvial terraces and deluvial aprons of badlands. The nests are vertical burrows 10-12 cm deep, surmounted by turrets of two distinct architectural forms: funnel-shaped and curved. The nests contain 1-3 vertical cells (mean-1.9) not different from the other parts of nest burrow. An egg is laid onto the bottom of the cell without attaching; it stands vertically via the moist adhesive surface of the bottom and then with the help of the position of the first prey, which is laid around the egg. The species is univoltine; prepupae hibernate in the cocoon for one or several years. Females hunt for caterpillars of two species of the noctuid genus Heliotis; 3-7 caterpillars (mean-3.7) are stored per cell. Adult feeding is recorded on flowers of Thymus tauricus. Males look for females at their water-collecting sites. Only a third of the cells are successful; the other ones are damaged by rain and the gold wasp, Chrysis valesiana, parasitizing in the nests. Nest-building and hunting activity of the species is described with the duration of certain nesting acts. Nesting biology of Paravespa species, rarity of P. rex, turret function, egg position, and measures for species conservation are discussed.

Interactions Increase Forager Availability and Activity in Harvester Ants

PubMed Central

Pinter-Wollman, Noa; Crow, Sam; Allen, Kelsey; Mathur, Maya B.; Gordon, Deborah M.

2015-01-01

Social insect colonies use interactions among workers to regulate collective behavior. Harvester ant foragers interact in a chamber just inside the nest entrance, here called the 'entrance chamber'. Previous studies of the activation of foragers in red harvester ants show that an outgoing forager inside the nest experiences an increase in brief antennal contacts before it leaves the nest to forage. Here we compare the interaction rate experienced by foragers that left the nest and ants that did not. We found that ants in the entrance chamber that leave the nest to forage experienced more interactions than ants that descend to the deeper nest without foraging. Additionally, we found that the availability of foragers in the entrance chamber is associated with the rate of forager return. An increase in the rate of forager return leads to an increase in the rate at which ants descend to the deeper nest, which then stimulates more ants to ascend into the entrance chamber. Thus a higher rate of forager return leads to more available foragers in the entrance chamber. The highest density of interactions occurs near the nest entrance and the entrances of the tunnels from the entrance chamber to the deeper nest. Local interactions with returning foragers regulate both the activation of waiting foragers and the number of foragers available to be activated. PMID:26539724

Termite nests as an abundant source of cultivable actinobacteria for biotechnological purposes.

PubMed

Sujada, Nikhom; Sungthong, Rungroch; Lumyong, Saisamorn

2014-01-01

A total of 118 actinobacterial isolates were collected from the three types of termite nests (mound, carton, and subterranean nests) to evaluate their potential as a source of bioactive actinobacteria with antimicrobial activity. The highest number (67 isolates) and generic abundance (7 known genera) of actinobacterial isolates were obtained from carton nests. Streptomyces was the dominant genus in each type of termite nest. In the non-Streptomyces group, Nocardia was the dominant genus detected in mound and carton nests, while Pseudonocardia was the dominant genus in subterranean nests. A discovery trend of novel species (<99% similarity in the 16S rRNA gene sequence) was also observed in the termite nests examined. Each type of termite nest housed >20% of bioactive actinobacteria that could inhibit the growth of at least one test organism, while 12 isolates, belonging to the genera Streptomyces, Amycolatopsis, Pseudonocardia, Micromonospora and Nocardia, exhibited distinct antimicrobial activities. Streptomyces sp. CMU-NKS-3 was the most distinct bioactive isolate. It was closely related to S. padanus MITKK-103T, which was confirmed by 99% similarities in their 16S rRNA gene sequences. The highest level of extracellular antimicrobial substances was produced by the isolate CMU-NKS-3, which was grown in potato dextrose broth and exhibited a wide range (6.10×10(-4)-1.25 mg mL(-1)) of minimum inhibitory concentrations against diverse pathogens. We concluded that termite nests are an abundant source of bioactive strains of cultivable actinobacteria for future biotechnological needs.

Successful nesting by a Bald Eagle pair in prairie grasslands of the Texas Panhandle

USGS Publications Warehouse

Boal, G.W.; Giovanni, M.D.; Beall, B.N.

2006-01-01

We observed a breeding Bald Eagle (Haliaeetus leitcocephalus) pair nesting in a short-grass prairie and agricultural community on the southern Great Plains of the Texas Panhandle in 2004 and 2005. The nesting eagles produced 1 fledgling in 2004 and 2 fledglings in 2005. Our assessment of landcover types within a 5-km radius of the nest indicated that grasslands accounted for most of the area (90%), followed by agricultural lands (8%). Black-tailed prairie dog (Cynomys ludovicianus) colonies occupied 2.5% of the area, and single human residences with associated structures (i.e., barns) occupied 2.5 ha in surface area was 51 km from the nest. An analysis of regurgitated castings collected near the nest revealed a mammalian-dominated, breeding-season diet with black-tailed prairie dogs occurring in 80.9% of the castings. Other identified prey included cottontails (Sylvilagus spp., 15.9%), black-tailed jackrabbits (Lepus californicus, 3.2%), pronghorn (Antilocapra americana, 3.2%), and plains pocket gopher (Geomys bursarius, 1.6%). Bird remains were also present in 34.9% of the castings. This is the first reported successful nesting of Bald Eagles in the panhandle region of Texas since 1916; the nest is particularly unique because of its distance from any substantial body of water.

Variation in Nest Temperatures of the American Alligator Found on the Kennedy Space Center Merritt Island National Wildlife Refuge

NASA Technical Reports Server (NTRS)

Lowers, Russell; Guillette, Louis J.; Weiss, Stephanie

2016-01-01

Information on nest temperatures of the American Alligator (Alligator mississippiensis) constructed in the wild is limited. Nesting temperatures during a critical thermal sensitive period determine the sex of alligators and are therefore critical in establishing the sex biases in recruitment efforts of alligators within a given community. Nest components, varying environmental conditions, and global warming could have a significant impact on nest temperatures, thus affecting future generations of a given population. One hundred and seventy four programmable thermistors were inserted into fifty eight nests from 2010 through 2015 nesting cycles. Three thermistors were placed inside each nest cavity (one on top of the eggs, one in the middle of the eggs, and one at the bottom of the clutch of the eggs) to collect temperature profiles in the incubation chamber and throughout the entire incubation period. One thermistor was also placed near or above these nests to obtain an ambient air temperature profile. Once retrieved, data from these thermistors were downloaded to examine temperature profiles throughout the incubation period as well as during the period of sexual determination. These data would help establish survival rates related to nest temperature and predict sex ratio of recruited neonates at the Kennedy Space Center. Over three million temperatures have been recorded since 2010 for the alligator thermistor study giving us insight to the recruitment efforts found here. Precipitation was the largest influence on nesting temperatures outside of daily photoperiod, with immediate changes of up to eight degrees Celsius.

7 CFR 1250.516 - Collecting handlers and collection.

Code of Federal Regulations, 2014 CFR

2014-01-01

... RESEARCH AND PROMOTION Rules and Regulations Assessments, Collections, and Remittances § 1250.516... who grades, cartons, or breaks such eggs. Such shell egg breaker or egg packer must collect and remit... person who buys or receives nest run eggs from a producer and who does not grade, carton, or break such...

7 CFR 1250.516 - Collecting handlers and collection.

Code of Federal Regulations, 2010 CFR

2010-01-01

... RESEARCH AND PROMOTION Rules and Regulations Assessments, Collections, and Remittances § 1250.516... who grades, cartons, or breaks such eggs. Such shell egg breaker or egg packer must collect and remit... person who buys or receives nest run eggs from a producer and who does not grade, carton, or break such...

7 CFR 1250.516 - Collecting handlers and collection.

Code of Federal Regulations, 2012 CFR

2012-01-01

... RESEARCH AND PROMOTION Rules and Regulations Assessments, Collections, and Remittances § 1250.516... who grades, cartons, or breaks such eggs. Such shell egg breaker or egg packer must collect and remit... person who buys or receives nest run eggs from a producer and who does not grade, carton, or break such...

7 CFR 1250.516 - Collecting handlers and collection.

Code of Federal Regulations, 2013 CFR

2013-01-01

... RESEARCH AND PROMOTION Rules and Regulations Assessments, Collections, and Remittances § 1250.516... who grades, cartons, or breaks such eggs. Such shell egg breaker or egg packer must collect and remit... person who buys or receives nest run eggs from a producer and who does not grade, carton, or break such...

7 CFR 1250.516 - Collecting handlers and collection.

Code of Federal Regulations, 2011 CFR

2011-01-01

... RESEARCH AND PROMOTION Rules and Regulations Assessments, Collections, and Remittances § 1250.516... who grades, cartons, or breaks such eggs. Such shell egg breaker or egg packer must collect and remit... person who buys or receives nest run eggs from a producer and who does not grade, carton, or break such...

Ground-nesting marine birds and potential for human disturbance in Glacier Bay National Park

USGS Publications Warehouse

Arimitsu, Mayumi L.; Romano, Marc D.; Piatt, John F.; Piatt, John F.; Gende, S.M.

2004-01-01

Glacier Bay National Park and Preserve contains a diverse assemblage of marine birds that use the area for nesting, foraging and molting. The abundance and diversity of marine bird species in Glacier Bay is unmatched in the region, due in part to the geomorphic and successional characteristics that result in a wide array of habitat types (Robards and others, 2003). The opportunity for proactive management of these species is unique in Glacier Bay National Park because much of the suitable marine bird nesting habitat occurs in areas designated as wilderness. Ground-nesting marine birds are vulnerable to human disturbance wherever visitors can access nest sites during the breeding season. Human disturbance of nest sites can be significant because intense parental care is required for egg and hatchling survival, and repeated disturbance can result in reduced productivity (Leseberg and others, 2000). Temporary nest desertion by breeding birds in disturbed areas can lead to increased predation on eggs and hatchlings by conspecifics or other predators (Bolduc and Guillemette, 2003). Human disturbance of ground-nesting birds may also affect incubation time and adult foraging success, which in turn can alter breeding success (Verhulst and others, 2001). Furthermore, human activity can potentially cause colony failure when disturbance prevents the initiation of nesting (Hatch, 2002). There is management concern about the susceptibility of breeding birds to disturbance from human activities, but little historical data has been collected on the distribution of ground-nesting marine birds in Glacier Bay. This report summarizes results obtained during two years of a three-year study to determine the distribution of ground-nesting marine birds in Glacier Bay, and the potential for human disturbance of those nesting birds.

Habitat comparisons and productivity in nesting common terns on the mid-Atlantic coast

USGS Publications Warehouse

Erwin, R.M.; Smith, D.C.

1985-01-01

Nesting Common Terns (Sterna hirundo) were studied at a number of barrier beaches and small islands of tidal salt marsh in New Jersey and the Eastern Shore of Maryland-Virginina from 1980 through 1982. Data were collected on clutch sizes, nest spacing, and nesting success. The principal null hypothesis tested was that no difference in reproductive success exists between beach and marsh habitats. Nests were monitored from egg-laying in mid-May until mid-July when young fledged. Clutch sizes varied among colonies and across years but no systematic effect of year, habitat, or colony size on mean clutch size per colony was detected. Analyses of nest productivity (estimated using both the Mayfield method and using a colony average) failed to reveal significant effects of habitat or colony size but showed a stronger year effect. Storm tide flooding and egg chick disappearance (presumably predation by Herring Gulls Larus argentatus and Laughing Gulls L. atricilla nesting nearby) accounted for most nest failures. Losses due to both these mortality factors were unpredictable from year to year. Nest spacing in salt marsh colonies was much closer than it was on barrier beaches. In mixed-species colonies with Black Skimmers (Rynchops niger), distances between tern and skimmer nests were also much smaller in marsh colonies than they were on beaches. The limited amount of wrack (windrows of dead, matted vegetation) preferred by marsh-nesting terns probably explains these spacing differences. Several lines of evidence suggest that terns prefer beaches to marshes for nesting, however, the uncertainty of predation and flooding may often obscure any intrinsic differences in habitat quality. Long-term field studies are essential for testing hypotheses related to differential fitness of individuals among habitats.

Industrious leaf cutter ants and their carbon footprints

NASA Astrophysics Data System (ADS)

Swanson, A. C.; Dierick, D.; Trahan, N. A.; Allen, M. F.; Schwendenmann, L.; Harmon, T. C.; Oberbauer, S. F.; Fernandez Bou, A. S.; Zelikova, T. J.

2017-12-01

Leaf cutter ants (LCA) are considered ecosystem engineers in Neotropical forest ecosystems because they alter physical and environmental conditions for other organisms. LCA excavate large underground nests, maintaining intricate tunnels and fungal and waste chambers, and they continuously bring in vast amounts of fresh leaf material. In order to understand their ecosystem-wide impacts, we set out to determine whether their engineering activities fundamentally alter soil structure, soil nutrient pools, and gas fluxes in a wet tropical rainforest in Costa Rica. To directly compare LCA nest to non-nest sites, we utilized embedded sensor arrays with series of soil moisture, CO2, O2, and temperature sensors placed at four soil depths and automated minirhizotrons (AMR) to measure root and hyphal production and turnover. We also collected soils for biogeochemical analyses and measured soil CO2 fluxes and carbon isotope ratios of below-ground CO2 for two years. Our measurements confirmed that LCA alter their soil environment to regulate internal soil CO2 concentrations, moisture, and temperature, increasing O2 concentrations in the process. There were marked differences in soil structure inside nests relative to non-nests and these were associated with increased root and hyphal production and turnover in nests. Soil C, N, P, and their respective degrading enzymes were highly variable among sites and between nests and controls but N and P increased with soil depth and were generally higher in nests than controls. Contrary to our expectations, C mineralization rates were lower in nests but CO2 fluxes were high from nest vents and similar to non-nests elsewhere. At the system scale, LCA appear to fundamentally change the soil environment inside their nests and create spatial heterogeneity in biogeochemical processes and root and hyphal growth, influencing the overall C balance of Neotropical forests.

Population-specific demographic estimates provide insights into declines of Lark Buntings (Calamospiza melanocorys)

USGS Publications Warehouse

Yackel Adams, A.A.; Skagen, S.K.; Savidge, J.A.

2007-01-01

Many North American prairie bird populations have recently declined, and the causes of these declines remain largely unknown. To determine whether population limitation occurs during breeding, we evaluated the stability of a population of prairie birds using population-specific values for fecundity and postfledging survival. During 2001-2003, we radiomarked 67 female Lark Buntings (Calamospiza melanocorys) to determine annual fecundity and evaluate contributing factors such as nest survival and breeding response (number of breeding attempts and dispersal). Collectively, 67 females built 112 nests (1.67 ± 0.07 nests female−1 season−1; range: 1–3); 34 were second nests and 11 were third nests. Daily nest survival estimates were similar for initial and later nests with overall nest survival (DSR19) of 30.7% and 31.7%, respectively. Nest predation was the most common cause of failure (92%). Capture and radiomarking of females did not affect nest survival. Lark Bunting dispersal probabilities increased among females that fledged young from initial nests and females that lost their original nests late in the season. Conservative and liberal estimates of mean annual fecundity were 0.96 ±0.11 and 1.24 ± 0.09 female offspring per female, respectively. Given the fecundity and juvenile-survival estimates for this population, annual adult survival values of 71–77% are necessary to achieve a stable population. Because adult survival of prairie passerines ranges between 55% and 65%, this study area may not be capable of sustaining a stable population in the absence of immigration. We contrast our population assessment with one that assumes indirect values of fecundity and juvenile survival. To elucidate limiting factors, estimation of population-specific demographic parameters is desirable. We present an approach for selecting species and areas for evaluation of population stability.

Contaminants in ospreys from the Pacific Northwest: I. Trends and Patterns in polychlorinated dibenzo-p-dioxins and -dibenzofurans in eggs and plasma

USGS Publications Warehouse

Elliott, J.E.; Machmer, M.M.; Henny, Charles J.; Wilson, L.K.; Norstrom, R.J.

1998-01-01

Osprey (Pandion haliaetus) eggs were collected from 1991 to 1997 at nests (na??=a??121) upstream and downstream of bleached kraft pulp mills and at reference sites in the Fraser and Columbia River drainage systems of British Columbia, Washington, and Oregon. Blood samples were collected from nestling ospreys during the 1992 breeding season on the Thompson River. Samples were analyzed for polychlorinated dibenzo-p-dioxins (PCDDs) and -dibenzofurans (PCDFs). Mean concentrations of 2,3,7,8-TCDD were significantly higher in eggs collected in 1991 at downstream compared to upstream nests near pulp mills at Kamloops and Castlegar, British Columbia. There were no significant temporal trends in 2,3,7,8-TCDD, -TCDF or other measured compounds at a sample of nests monitored between 1991 and 1994 downstream of the Castlegar pulp mill, despite changes in bleaching technology (CIO2 substitution). However, by 1997 concentrations of 2,3,7,8-TCDD and -TCDF were significantly lower than previous years in nests sampled downstream at both Castlegar and Kamloops. An unusual pattern of higher chlorinated PCDDs and PCDFs was found in many of the osprey eggs collected in this study, and considerable individual variation in the pattern existed among eggs from the same site. For example, eggs from four different nests at one study area (Quesnel) on the Fraser River had concentrations of 1,2,3,4,6,7,8-HpCDD ranging from <1 to 1,100 ng/kg and OCDD from <1 to 7,000 ng/kg wet weight. Higher mean concentrations of HpCDD and OCDD were found in eggs from the Thompson River, a tributary of the Fraser, compared to the Columbia River, and concentrations were generally higher at nests upstream of pulp mills. In plasma samples, 1,2,3,4,6,7,8-HpCDD and OCDD were the main compounds detected, with no significant differences measured between samples upstream versus downstream or earlier versus later in the breeding season. Use of chlorophenolic wood preservatives by lumber processors was considered the main source of higher chlorinated PCDD/Fs throughout the systems, based on patterns of trace PCDFs in eggs and significant correlations between egg concentrations of pentachlorophenol and both HpCDD (ra??=a??0.891, pa??

Contaminants in ospreys from the Pacific Northwest: I. Trends and patterns in polychlorinated dibenzo-p-dioxins and -dibenzofurans in eggs and plasma.

PubMed

Elliott, J E; Machmer, M M; Henny, C J; Wilson, L K; Norstrom, R J

1998-11-01

Osprey (Pandion haliaetus) eggs were collected from 1991 to 1997 at nests (n = 121) upstream and downstream of bleached kraft pulp mills and at reference sites in the Fraser and Columbia River drainage systems of British Columbia, Washington, and Oregon. Blood samples were collected from nestling ospreys during the 1992 breeding season on the Thompson River. Samples were analyzed for polychlorinated dibenzo-p-dioxins (PCDDs) and -dibenzofurans (PCDFs). Mean concentrations of 2,3,7,8-TCDD were significantly higher in eggs collected in 1991 at downstream compared to upstream nests near pulp mills at Kamloops and Castlegar, British Columbia. There were no significant temporal trends in 2,3,7,8-TCDD, -TCDF or other measured compounds at a sample of nests monitored between 1991 and 1994 downstream of the Castlegar pulp mill, despite changes in bleaching technology (CIO2 substitution). However, by 1997 concentrations of 2, 3,7,8-TCDD and -TCDF were significantly lower than previous years in nests sampled downstream at both Castlegar and Kamloops. An unusual pattern of higher chlorinated PCDDs and PCDFs was found in many of the osprey eggs collected in this study, and considerable individual variation in the pattern existed among eggs from the same site. For example, eggs from four different nests at one study area (Quesnel) on the Fraser River had concentrations of 1,2,3,4,6,7,8-HpCDD ranging from <1 to 1,100 ng/kg and OCDD from <1 to 7,000 ng/kg wet weight. Higher mean concentrations of HpCDD and OCDD were found in eggs from the Thompson River, a tributary of the Fraser, compared to the Columbia River, and concentrations were generally higher at nests upstream of pulp mills. In plasma samples, 1,2,3,4,6,7,8-HpCDD and OCDD were the main compounds detected, with no significant differences measured between samples upstream versus downstream or earlier versus later in the breeding season. Use of chlorophenolic wood preservatives by lumber processors was considered the main source of higher chlorinated PCDD/Fs throughout the systems, based on patterns of trace PCDFs in eggs and significant correlations between egg concentrations of pentachlorophenol and both HpCDD (r = 0.891, p < 0.01) and OCDD (r = 0.870, p < 0.01).

Demographic consequences of nest box use for Red-footed Falcons Falco vespertinus in Central Asia

USGS Publications Warehouse

Bragin, Evgeny A.; Bragin, Alexander E.; Katzner, Todd

2017-01-01

Nest box programs are frequently implemented for the conservation of cavity-nesting birds, but their effectiveness is rarely evaluated in comparison to birds not using nest boxes. In the European Palearctic, Red-footed Falcon Falco vespertinus populations are both of high conservation concern and are strongly associated with nest box programs in heavily managed landscapes. We used a 21-year monitoring dataset collected on 753 nesting attempts by Red-footed Falcons in unmanaged natural or semi-natural habitats to provide basic information on this poorly known species; to evaluate long-term demographic trends; and to evaluate response of demographic parameters of Red-footed Falcons to environmental factors including use of nest boxes. We observed significant differences among years in laying date, offspring loss, and numbers of fledglings produced, but not in egg production. Of these four parameters, offspring loss and, to a lesser extent, number of fledglings exhibited directional trends over time. Variation in laying date and in numbers of eggs were not well explained by any one model, but instead by combinations of models, each with informative terms for nest type. Nevertheless, laying in nest boxes occurred 2.10 ± 0.70 days earlier than in natural nests. In contrast, variation in both offspring loss and numbers of fledglings produced were fairly well explained by a single model including terms for nest type, nest location, and an interaction between the two parameters (65% and 81% model weights respectively), with highest offspring loss in nest boxes on forest edges. Because, for other species, earlier laying dates are associated with more fit individuals, this interaction highlighted a possible ecological trap, whereby birds using nest boxes on forest edges lay eggs earlier but suffer greater offspring loss and produce lower numbers of fledglings than do those in other nesting settings. If nest boxes increase offspring loss for Red-footed Falcons in heavily managed landscapes where populations are at greater risk, or for the many other species of rare or endangered birds supported by nest box programs, these processes could have important demographic and conservation consequences.

Northern Pintail

USGS Publications Warehouse

Clark, Robert G.; Fleskes, Joseph P.; Guyn, Karla L.; Haukos, David A.; Austin, Jane E.; Miller, Michael R.

2014-01-01

This medium-sized dabbling duck of slender, elegant lines and conservative plumage coloration is circumpolar in distribution and abundant in North America, with core nesting habitat in Alaska and the Prairie Pothole Region of southern Canada and the northern Great Plains. Breeders favor shallow wetlands interspersed throughout prairie grasslands or arctic tundra. An early fall migrant, the species arrives on wintering areas beginning in August, after wing molt, often forming large roosting and feeding flocks on open, shallow wetlands and flooded agricultural fields. The birds consume grains, marsh plant seeds, and aquatic invertebrates throughout fall and winter.Northern Pintails are among the earliest nesting ducks in North America, beginning shortly after ice-out in many northern areas. Individuals form new pair bonds each winter but are highly promiscuous during the nesting season, with mated and unmated males often involved in vigorous, acrobatic Pursuit Flights. Annual nest success and productivity vary with water conditions, predation, and weather. Females build nests on the ground, often far from water. Only the female incubates; her mate leaves shortly after incubation begins. Ducklings hatch together in one day, follow the female to water after a day in the nest, and fledge by July or August. Adults and ducklings consume mainly aquatic invertebrates during the breeding season.Predators and farming operations destroy many thousands of Northern Pintail nests annually; farming has also greatly reduced the amount of quality nesting cover available. Winter habitats are threatened by water shortages, agricultural development, contamination, and urbanization. Periods of extended drought in prairie nesting regions have caused dramatic population declines, usually followed by periods of recovery. Over the long term, however, the continental population of Northern Pintails has declined significantly from 6 million birds in the early 1970s to less than 3 million in the late 1980s and early 1990s. Since then, the population appears to have stabilized; in 2013, the estimate was 3.3 million birds, a large number but below conservation goals despite favorable wetland conditions in much of the prairie breeding region. Ongoing conservation measures, however, such as habitat restoration and enhancement of agricultural lands, as well as prudent harvest management, suggest that Northern Pintails should have a secure future in North America.

Using DNA from hairs left at depredated greater sage-grouse nests to detect mammalian nest predators

Treesearch

Christopher P. Kirol; Kristine L. Pilgrim; Andrew L. Sutphin; Thomas L. Maechtle

2018-01-01

Despite a multitude of studies on sage-grouse (Centrocercus spp.), there is still sparse information on the predator communities that influence sage-grouse productivity and how these predator communities may change when sagebrush habitats are altered by human activities. As a proof-of-concept, we used mammalian hairs collected at depredated greater sage-grouse (C....

Compilation of annual reports of the Navy ELF (Extremely Low Frequency) communications system ecological monitoring program (1983). Volume 2: Tabs F-J

NASA Astrophysics Data System (ADS)

Fischer, R. L.; Beaver, D. L.; Asher, J. H.; Hill, R. W.; Burton, T. M.

1984-07-01

The climatic factors which are known to impinge upon the biological behavior patterns of the megachilid bees were measured. Statistical testing of man-made influences such as ELF into the environment were pursued, with emphasis on nest architecture, pollen collection, and ability to orient to nest sites.

A simple threshold rule is sufficient to explain sophisticated collective decision-making.

PubMed

Robinson, Elva J H; Franks, Nigel R; Ellis, Samuel; Okuda, Saki; Marshall, James A R

2011-01-01

Decision-making animals can use slow-but-accurate strategies, such as making multiple comparisons, or opt for simpler, faster strategies to find a 'good enough' option. Social animals make collective decisions about many group behaviours including foraging and migration. The key to the collective choice lies with individual behaviour. We present a case study of a collective decision-making process (house-hunting ants, Temnothorax albipennis), in which a previously proposed decision strategy involved both quality-dependent hesitancy and direct comparisons of nests by scouts. An alternative possible decision strategy is that scouting ants use a very simple quality-dependent threshold rule to decide whether to recruit nest-mates to a new site or search for alternatives. We use analytical and simulation modelling to demonstrate that this simple rule is sufficient to explain empirical patterns from three studies of collective decision-making in ants, and can account parsimoniously for apparent comparison by individuals and apparent hesitancy (recruitment latency) effects, when available nests differ strongly in quality. This highlights the need to carefully design experiments to detect individual comparison. We present empirical data strongly suggesting that best-of-n comparison is not used by individual ants, although individual sequential comparisons are not ruled out. However, by using a simple threshold rule, decision-making groups are able to effectively compare options, without relying on any form of direct comparison of alternatives by individuals. This parsimonious mechanism could promote collective rationality in group decision-making.

Beach Geomorphology and Kemp's Ridley (Lepidochelys kempii) Nest Site Selection along Padre Island, Texas, USA

NASA Astrophysics Data System (ADS)

Culver, M.; Gibeaut, J. C.; Shaver, D. J.; Tissot, P.; Starek, M. J.

2017-12-01

The Kemp's ridley sea turtle (Lepidochelys kempii) is the most endangered sea turtle in the world, largely due to the limited geographic range of its nesting habitat. In the U.S., the majority of nesting occurs along Padre Island National Seashore (PAIS) in Texas. There has been limited research regarding the connection between beach geomorphology and Kemp's ridley nesting patterns, but studies concerning other sea turtle species suggest that certain beach geomorphology variables, such as beach slope and width, influence nest site selection. This research investigates terrestrial habitat variability of the Kemp's ridley sea turtle and quantifies the connection between beach geomorphology and Kemp's ridley nest site selection on PAIS and South Padre Island, Texas. Airborne topographic lidar data collected annually along the Texas coast from 2009 through 2012 was utilized to extract beach geomorphology characteristics, such as beach slope and width, dune height, and surface roughness, among others. The coordinates of observed Kemp's ridley nests from corresponding years were integrated with the aforementioned data in statistical models, which analyzed the influence of both general trends in geomorphology and individual morphologic variables on nest site selection. This research identified the terrestrial habitat variability of the Kemp's ridley and quantified the range of geomorphic characteristics of nesting beaches. Initial results indicate that dune width, beach width, and wind speed are significant variables in relation to nest presence, using an alpha of 0.1. Higher wind speeds and narrower beaches and foredunes favor nest presence. The average nest elevation is 1.13 m above mean sea level, which corresponds to the area directly below the potential vegetation line, and the majority of nesting occurs between the elevations of 0.68 m and 1.4 m above mean sea level. The results of this study include new information regarding Kemp's ridley beach habitat and its influence on nesting patterns that could be useful for the conservation and management of the species.

Hatching and fledging times from grassland passerine nests

USGS Publications Warehouse

Pietz, Pamela J.; Granfors, Diane A.; Grant, Todd A.; Ribic, Christine A.; Thompson, Frank R.; Pietz, Pamela J.

2012-01-01

1 day and was positively correlated with clutch size. Length of the fledging period for a brood was usually Accurate estimates of fledging age are needed in field studies to avoid inducing premature fledging or missing the fledging event. Both may lead to misinterpretation of nest fate. Correctly assessing nest fate and length of the nestling period can be critical for accurate calculation of nest survival rates. For researchers who mark nestlings, knowing the age at which their activities may cause young to leave nests prematurely could prevent introducing bias to their studies. We obtained estimates of fledging age using data from grassland bird nests monitored from hatching through fledging with video-surveillance systems in North Dakota and Minnesota during 1996–2001. We compared these values to those obtained from traditional nest visits and from available literature. Mean and modal fledging ages for video-monitored nests were generally similar to those for visited nests, although Clay-colored Sparrows (Spizella pallida) typically fledged 1 day earlier from visited nests. Average fledging ages from both video and nest visits occurred within ranges reported in the literature, but expanded by 1–2 days the upper age limit for Clay-colored Sparrows and the lower age limit for Bobolinks (Dolichonyx oryzivorus). Video showed that eggs hatched throughout the day whereas most young fledged in the morning (06:30–12:30 CDT). Length of the hatching period for a clutch was usually >1 day and was positively correlated with clutch size. Length of the fledging period for a brood was usually <1 day, and in nearly half the nests, fledging was completed within <2 hr. Video surveillance has proven to be a useful tool for providing new information and for corroborating published statements related to hatching and fledging chronology. Comparison of data collected from video and nest visits showed that carefully conducted nest visits generally can provide reliable data for deriving estimates of survival.

A detailed study of the structure of the nested planetary nebula, Hb 12, the Matryoshka nebula

DOE Office of Scientific and Technical Information (OSTI.GOV)

Clark, D. M.; López, J. A.; Edwards, M. L.

We present near-IR, integral field spectroscopic observations of the planetary nebula (PN) Hb 12 using Near-infrared Integral Field Spectrograph (NIFS) on Gemini-North. Combining NIFS with the adaptive optics system Altair, we provide a detailed study of the core and inner structure of this PN. We focus the analysis in the prominent emission lines [Fe II] (1.6436 μm), He I (2.0585 μm), H{sub 2} (2.1214 μm), and Br{sub γ} (2.16553 μm). We find that the [Fe II] emission traces a tilted system of bipolar lobes, with the northern lobe being redshifted and the southern lobe blueshifted. The [Fe II] emission ismore » very faint at the core and only present close to the systemic velocity. There is no H{sub 2} emission in the core, whereas the core is prominent in the He I and Br{sub γ} recombination lines. The H{sub 2} emission is concentrated in equatorial arcs of emission surrounding the core and expanding at ∼30 km s{sup –1}. These arcs are compared with Hubble Space Telescope images and shown to represent nested loops belonging to the inner sections of a much larger bipolar structure that replicates the inner one. The He I and Br{sub γ} emission from the core clearly show a cylindrical central cavity that seems to represent the inner walls of an equatorial density enhancement or torus. The torus is 0.''2 wide (≡200 AU radius at a distance of 2000 pc) and expanding at ≤30 km s{sup –1}. The eastern wall of the inner torus is consistently more intense than the western wall, which could indicate the presence of an off-center star, such as is observed in the similar hourglass PN, MyCn 18. A bipolar outflow is also detected in Br{sub γ} emerging within 0.''1 from the core at ∼ ± 40 km s{sup –1}.« less

Maternal transfer and sublethal immune system effects of brevetoxin exposure in nesting loggerhead sea turtles (Caretta caretta) from western Florida.

PubMed

Perrault, Justin R; Bauman, Katherine D; Greenan, Taylor M; Blum, Patricia C; Henry, Michael S; Walsh, Catherine J

2016-11-01

Blooms of Karenia brevis (also called red tides) occur almost annually in the Gulf of Mexico. The health effects of the neurotoxins (i.e., brevetoxins) produced by this toxic dinoflagellate on marine turtles are poorly understood. Florida's Gulf Coast represents an important foraging and nesting area for a number of marine turtle species. Most studies investigating brevetoxin exposure in marine turtles thus far focus on dead and/or stranded individuals and rarely examine the effects in apparently "healthy" free-ranging individuals. From May-July 2014, one year after the last red tide bloom, we collected blood from nesting loggerhead sea turtles (Caretta caretta) on Casey Key, Florida USA. These organisms show both strong nesting and foraging site fidelity. The plasma was analyzed for brevetoxin concentrations in addition to a number of health and immune-related parameters in an effort to establish sublethal effects of this toxin. Lastly, from July-September 2014, we collected unhatched eggs and liver and yolk sacs from dead-in-nest hatchlings from nests laid by the sampled females and tested these samples for brevetoxin concentrations to determine maternal transfer and effects on reproductive success. Using a competitive enzyme-linked immunosorbent assay (ELISA), all plasma samples from nesting females tested positive for brevetoxin (reported as ng brevetoxin-3[PbTx-3] equivalents [eq]/mL) exposure (2.1-26.7ng PbTx-3eq/mL). Additionally, 100% of livers (1.4-13.3ng PbTx-3eq/mL) and yolk sacs (1.7-6.6ng PbTx-3eq/mL) from dead-in-nest hatchlings and 70% of eggs (<1.0-24.4ng PbTx-3eq/mL) tested positive for brevetoxin exposure with the ELISA. We found that plasma brevetoxin concentrations determined by an ELISA in nesting females positively correlated with gamma-globulins, indicating a potential for immunomodulation as a result of brevetoxin exposure. While the sample sizes were small, we also found that plasma brevetoxin concentrations determined by an ELISA in nesting females significantly correlated with liver brevetoxin concentrations of dead-in-nest hatchlings and that brevetoxins could be related to a decreased reproductive success in this species. This study suggests that brevetoxins can still elicit negative effects on marine life long after a bloom has dissipated. These results improve our understanding of maternal transfer and sublethal effects of brevetoxin exposure in marine turtles. Copyright © 2016 Elsevier B.V. All rights reserved.

Global information sampling in the honey bee

NASA Astrophysics Data System (ADS)

Johnson, Brian R.

2008-06-01

Central to the question of task allocation in social insects is how workers acquire information. Patrolling is a curious behavior in which bees meander over the face of the comb inspecting cells. Several authors have suggested it allows bees to collect global information, but this has never been formally evaluated. This study explores this hypothesis by answering three questions. First, do bees gather information in a consistent manner as they patrol? Second, do they move far enough to get a sense of task demand in distant areas of the nest? And third, is patrolling a commonly performed task? Focal animal observations were used to address the first two predictions, while a scan sampling study was used to address the third. The results were affirmative for each question. While patrolling, workers collected information by performing periodic clusters of cell inspections. Patrolling bees not only traveled far enough to frequently change work zone; they often visited every part of the nest. Finally, the majority of the bees in the middle-age caste were shown to move throughout the nest over the course of a few hours in a manner suggestive of patrolling. Global information collection is contrary to much current theory, which assumes that workers respond to local information only. This study thus highlights the nonmutually exclusive nature of various information collection regimes in social insects.

The use of plastic debris as nesting material by a colonial seabird and associated entanglement mortality.

PubMed

Votier, Stephen C; Archibald, Kirsten; Morgan, Greg; Morgan, Lisa

2011-01-01

Entanglement with plastic debris is a major cause of mortality in marine taxa, but the population-level consequences are unknown. Some seabirds collect marine debris for nesting material, which may lead to entanglement. Here we investigate the use of plastics as nesting material by northern gannets Morus bassanus and assess the associated levels of mortality. On average gannet nests contained 469.91 g (range 0-1293 g) of plastic, equating to an estimated colony total of 18.46 tones (range 4.47-42.34 tones). The majority of nesting material was synthetic rope, which appears to be used preferentially. On average 62.85 ± 26.84 (range minima 33-109) birds were entangled each year, totalling 525 individuals over eight years, the majority of which were nestlings. Although mortality rates are high, they are unlikely to have population-level effects. The use of synthetic fibres as nesting material is a common strategy among seabirds, but the impacts of entanglement warrants further investigation. Crown Copyright © 2010. Published by Elsevier Ltd. All rights reserved.

[Nested species subsets of amphibians and reptiles in Thousand Island Lake].

PubMed

Wang, Xi; Wang, Yan-Ping; Ding, Ping

2012-10-01

Habitat fragmentation is a main cause for the loss of biological diversity. Combining line-transect methods to survey the amphibians and reptiles on 23 islands on Thousand Island Lake in Zhejiang province, along with survey data on nearby plant species and habitat variables collected by GIS, we used the"BINMATNEST (binary matrix nestedness temperature calculator)" software and the Spearman rank correlation to examine whether amphibians and reptiles followed nested subsets and their influencing factors. The results showed that amphibians and reptiles were significantly nested, and that the island area and habitat type were significantly associated with their nested ranks. Therefore, to effectively protect amphibians and reptiles in the Thousand Islands Lake area we should pay prior attention to islands with larger areas and more habitat types.

Steady Flow Generated by a Core Oscillating in a Rotating Spherical Cavity

NASA Astrophysics Data System (ADS)

Kozlov, V. G.; Subbotin, S. V.

2018-01-01

Steady flow generated by oscillations of an inner solid core in a fluid-filled rotating spherical cavity is experimentally studied. The core with density less than the fluid density is located near the center of the cavity and is acted upon by a centrifugal force. The gravity field directed perpendicular to the rotation axis leads to a stationary displacement of the core from the rotation axis. As a result, in the frame of reference attached to the cavity, the core performs circular oscillation with frequency equal to the rotation frequency, and its center moves along a circular trajectory in the equatorial plane around the center of the cavity. For the differential rotation of the core to be absent, one of the poles of the core is connected to the nearest pole of the cavity with a torsionally elastic, flexible fishing line. It is found that the oscillation of the core generates axisymmetric azimuthal fluid flow in the cavity which has the form of nested liquid columns rotating with different angular velocities. Comparison with the case of a free oscillating core which performs mean differential rotation suggests the existence of two mechanisms of flow generation (due to the differential rotation of the core in the Ekman layer and due to the oscillation of the core in the oscillating boundary layers).

Quantifying Northern Goshawk diets using remote cameras and observations from blinds

USGS Publications Warehouse

Rogers, A.S.; DeStefano, S.; Ingraldi, M.F.

2005-01-01

Raptor diet is most commonly measured indirectly, by analyzing castings and prey remains, or directly, by observing prey deliveries from blinds. Indirect methods are not only time consuming, but there is evidence to suggest these methods may overestimate certain prey taxa within raptor diet. Remote video surveillance systems have been developed to aid in monitoring and data collection, but their use in field situations can be challenging and is often untested. To investigate diet and prey delivery rates of Northern Goshawks (Accipiter gentilis), we operated 10 remote camera systems at occupied nests during the breeding seasons of 1999 and 2000 in east-central Arizona. We collected 2458 hr of useable video and successfully identified 627 (93%) prey items at least to Class (Aves, Mammalia, or Reptilia). Of prey items identified to genus, we identified 344 (81%) mammals, 62 (15%) birds, and 16 (4%) reptiles. During camera operation, we also conducted observations from blinds at a subset of five nests to compare the relative efficiency and precision of both methods. Limited observations from blinds yielded fewer prey deliveries, and therefore, lower delivery rates (0.16 items/hr) than simultaneous video footage (0.28 items/hr). Observations from blinds resulted in fewer prey identified to the genus and species levels, when compared to data collected by remote cameras. Cameras provided a detailed and close view of nests, allowed for simultaneous recording at multiple nests, decreased observer bias and fatigue, and provided a permanent archive of data. ?? 2005 The Raptor Research Foundation, Inc.

A hierarchical nest survival model integrating incomplete temporally varying covariates

PubMed Central

Converse, Sarah J; Royle, J Andrew; Adler, Peter H; Urbanek, Richard P; Barzen, Jeb A

2013-01-01

Nest success is a critical determinant of the dynamics of avian populations, and nest survival modeling has played a key role in advancing avian ecology and management. Beginning with the development of daily nest survival models, and proceeding through subsequent extensions, the capacity for modeling the effects of hypothesized factors on nest survival has expanded greatly. We extend nest survival models further by introducing an approach to deal with incompletely observed, temporally varying covariates using a hierarchical model. Hierarchical modeling offers a way to separate process and observational components of demographic models to obtain estimates of the parameters of primary interest, and to evaluate structural effects of ecological and management interest. We built a hierarchical model for daily nest survival to analyze nest data from reintroduced whooping cranes (Grus americana) in the Eastern Migratory Population. This reintroduction effort has been beset by poor reproduction, apparently due primarily to nest abandonment by breeding birds. We used the model to assess support for the hypothesis that nest abandonment is caused by harassment from biting insects. We obtained indices of blood-feeding insect populations based on the spatially interpolated counts of insects captured in carbon dioxide traps. However, insect trapping was not conducted daily, and so we had incomplete information on a temporally variable covariate of interest. We therefore supplemented our nest survival model with a parallel model for estimating the values of the missing insect covariates. We used Bayesian model selection to identify the best predictors of daily nest survival. Our results suggest that the black fly Simulium annulus may be negatively affecting nest survival of reintroduced whooping cranes, with decreasing nest survival as abundance of S. annulus increases. The modeling framework we have developed will be applied in the future to a larger data set to evaluate the biting-insect hypothesis and other hypotheses for nesting failure in this reintroduced population; resulting inferences will support ongoing efforts to manage this population via an adaptive management approach. Wider application of our approach offers promise for modeling the effects of other temporally varying, but imperfectly observed covariates on nest survival, including the possibility of modeling temporally varying covariates collected from incubating adults. PMID:24340185

A hierarchical nest survival model integrating incomplete temporally varying covariates

USGS Publications Warehouse

Converse, Sarah J.; Royle, J. Andrew; Adler, Peter H.; Urbanek, Richard P.; Barzan, Jeb A.

2013-01-01

Nest success is a critical determinant of the dynamics of avian populations, and nest survival modeling has played a key role in advancing avian ecology and management. Beginning with the development of daily nest survival models, and proceeding through subsequent extensions, the capacity for modeling the effects of hypothesized factors on nest survival has expanded greatly. We extend nest survival models further by introducing an approach to deal with incompletely observed, temporally varying covariates using a hierarchical model. Hierarchical modeling offers a way to separate process and observational components of demographic models to obtain estimates of the parameters of primary interest, and to evaluate structural effects of ecological and management interest. We built a hierarchical model for daily nest survival to analyze nest data from reintroduced whooping cranes (Grus americana) in the Eastern Migratory Population. This reintroduction effort has been beset by poor reproduction, apparently due primarily to nest abandonment by breeding birds. We used the model to assess support for the hypothesis that nest abandonment is caused by harassment from biting insects. We obtained indices of blood-feeding insect populations based on the spatially interpolated counts of insects captured in carbon dioxide traps. However, insect trapping was not conducted daily, and so we had incomplete information on a temporally variable covariate of interest. We therefore supplemented our nest survival model with a parallel model for estimating the values of the missing insect covariates. We used Bayesian model selection to identify the best predictors of daily nest survival. Our results suggest that the black fly Simulium annulus may be negatively affecting nest survival of reintroduced whooping cranes, with decreasing nest survival as abundance of S. annulus increases. The modeling framework we have developed will be applied in the future to a larger data set to evaluate the biting-insect hypothesis and other hypotheses for nesting failure in this reintroduced population; resulting inferences will support ongoing efforts to manage this population via an adaptive management approach. Wider application of our approach offers promise for modeling the effects of other temporally varying, but imperfectly observed covariates on nest survival, including the possibility of modeling temporally varying covariates collected from incubating adults.

RedeR: R/Bioconductor package for representing modular structures, nested networks and multiple levels of hierarchical associations

PubMed Central

2012-01-01

Visualization and analysis of molecular networks are both central to systems biology. However, there still exists a large technological gap between them, especially when assessing multiple network levels or hierarchies. Here we present RedeR, an R/Bioconductor package combined with a Java core engine for representing modular networks. The functionality of RedeR is demonstrated in two different scenarios: hierarchical and modular organization in gene co-expression networks and nested structures in time-course gene expression subnetworks. Our results demonstrate RedeR as a new framework to deal with the multiple network levels that are inherent to complex biological systems. RedeR is available from http://bioconductor.org/packages/release/bioc/html/RedeR.html. PMID:22531049

Ghrelin and leptin modulate the feeding behaviour of the hawksbill turtle Eretmochelys imbricata during nesting season

PubMed Central

Goldberg, Daphne Wrobel; Leitão, Santiago Alonso Tobar; Godfrey, Matthew H.; Lopez, Gustave Gilles; Santos, Armando José Barsante; Neves, Fabiana Alves; de Souza, Érica Patrícia Garcia; Moura, Anibal Sanchez; Bastos, Jayme da Cunha; Bastos, Vera Lúcia Freire da Cunha

2013-01-01

Female sea turtles have rarely been observed foraging during the nesting season. This suggests that prior to their migration to nesting beaches the females must store sufficient energy and nutrients at their foraging grounds and must be physiologically capable of undergoing months without feeding. Leptin (an appetite-suppressing protein) and ghrelin (a hunger-stimulating peptide) affect body weight by influencing energy intake in all vertebrates. We investigated the levels of these hormones and other physiological and nutritional parameters in nesting hawksbill sea turtles in Rio Grande do Norte State, Brazil, by collecting consecutive blood samples from 41 turtles during the 2010–2011 and 2011–2012 reproductive seasons. We found that levels of serum leptin decreased over the nesting season, which potentially relaxed suppression of food intake and stimulated females to begin foraging either during or after the post-nesting migration. Concurrently, we recorded an increasing trend in ghrelin, which may have stimulated food intake towards the end of the nesting season. Both findings are consistent with the prediction that post-nesting females will begin to forage, either during or immediately after their post-nesting migration. We observed no seasonal trend for other physiological parameters (values of packed cell volume and serum levels of alanine aminotransferase, aspartate aminotransferase, alkaline phosphatase, γ-glutamyl transferase, low-density lipoprotein, and high-density lipoprotein). The observed downward trends in general serum biochemistry levels were probably due to the physiological challenge of vitellogenesis and nesting in addition to limited energy resources and probable fasting. PMID:27293600

Ghrelin and leptin modulate the feeding behaviour of the hawksbill turtle Eretmochelys imbricata during nesting season.

PubMed

Goldberg, Daphne Wrobel; Leitão, Santiago Alonso Tobar; Godfrey, Matthew H; Lopez, Gustave Gilles; Santos, Armando José Barsante; Neves, Fabiana Alves; de Souza, Érica Patrícia Garcia; Moura, Anibal Sanchez; Bastos, Jayme da Cunha; Bastos, Vera Lúcia Freire da Cunha

2013-01-01

Female sea turtles have rarely been observed foraging during the nesting season. This suggests that prior to their migration to nesting beaches the females must store sufficient energy and nutrients at their foraging grounds and must be physiologically capable of undergoing months without feeding. Leptin (an appetite-suppressing protein) and ghrelin (a hunger-stimulating peptide) affect body weight by influencing energy intake in all vertebrates. We investigated the levels of these hormones and other physiological and nutritional parameters in nesting hawksbill sea turtles in Rio Grande do Norte State, Brazil, by collecting consecutive blood samples from 41 turtles during the 2010-2011 and 2011-2012 reproductive seasons. We found that levels of serum leptin decreased over the nesting season, which potentially relaxed suppression of food intake and stimulated females to begin foraging either during or after the post-nesting migration. Concurrently, we recorded an increasing trend in ghrelin, which may have stimulated food intake towards the end of the nesting season. Both findings are consistent with the prediction that post-nesting females will begin to forage, either during or immediately after their post-nesting migration. We observed no seasonal trend for other physiological parameters (values of packed cell volume and serum levels of alanine aminotransferase, aspartate aminotransferase, alkaline phosphatase, γ-glutamyl transferase, low-density lipoprotein, and high-density lipoprotein). The observed downward trends in general serum biochemistry levels were probably due to the physiological challenge of vitellogenesis and nesting in addition to limited energy resources and probable fasting.

Termite Nests as an Abundant Source of Cultivable Actinobacteria for Biotechnological Purposes

PubMed Central

Sujada, Nikhom; Sungthong, Rungroch; Lumyong, Saisamorn

2014-01-01

A total of 118 actinobacterial isolates were collected from the three types of termite nests (mound, carton, and subterranean nests) to evaluate their potential as a source of bioactive actinobacteria with antimicrobial activity. The highest number (67 isolates) and generic abundance (7 known genera) of actinobacterial isolates were obtained from carton nests. Streptomyces was the dominant genus in each type of termite nest. In the non-Streptomyces group, Nocardia was the dominant genus detected in mound and carton nests, while Pseudonocardia was the dominant genus in subterranean nests. A discovery trend of novel species (<99% similarity in the 16S rRNA gene sequence) was also observed in the termite nests examined. Each type of termite nest housed >20% of bioactive actinobacteria that could inhibit the growth of at least one test organism, while 12 isolates, belonging to the genera Streptomyces, Amycolatopsis, Pseudonocardia, Micromonospora and Nocardia, exhibited distinct antimicrobial activities. Streptomyces sp. CMU-NKS-3 was the most distinct bioactive isolate. It was closely related to S. padanus MITKK-103T, which was confirmed by 99% similarities in their 16S rRNA gene sequences. The highest level of extracellular antimicrobial substances was produced by the isolate CMU-NKS-3, which was grown in potato dextrose broth and exhibited a wide range (6.10×10−4–1.25 mg mL−1) of minimum inhibitory concentrations against diverse pathogens. We concluded that termite nests are an abundant source of bioactive strains of cultivable actinobacteria for future biotechnological needs. PMID:24909709

A Newly Developed Nested PCR Assay for the Detection of Helicobacter pylori in the Oral Cavity.

PubMed

Ismail, Hawazen; Morgan, Claire; Griffiths, Paul; Williams, John; Jenkins, Gareth

2016-01-01

To develop a new nested polymerase chain reaction (PCR) assay for identifying Helicobacter pylori DNA from dental plaque. H. pylori is one of the most common chronic bacterial pathogens in humans. The accurate detection of this organism is essential for proper patient management and for the eradication of the bacteria following treatment. Forty-nine patients (24 males and 25 females; mean age: 51; range, 19 to 94 y) were investigated for the presence of H. pylori in dental plaque by single-step PCR and nested PCR and in the stomach by single-step PCR, nested PCR, and histologic examination. The newly developed nested PCR assay identified H. pylori DNA in gastric biopsies of 18 patients who were histologically classified as H. pylori-positive and 2 additional biopsies of patients who were H. pylori-negative by histologic examination (20/49; 40.8%). Dental plaque samples collected before and after endoscopy from the 49 patients revealed that single-step PCR did not detect H. pylori but nested PCR was able to detect H. pylori DNA in 40.8% (20/49) patients. Nested PCR gave a higher detection rate (40.8%, 20/49) than that of histology (36.7%, 18/49) and single-step PCR. When nested PCR results were compared with histology results there was no significant difference between the 2 methods. Our newly developed nested PCR assay is at least as sensitive as histology and may be useful for H. pylori detection in patients unfit for endoscopic examination.

Habitat use of breeding green turtles Chelonia mydas tagged in Dry Tortugas National Park: Making use of local and regional MPAs

USGS Publications Warehouse

Hart, Kristen; Zawada, David G.; Fujisaki, Ikuko; Lidz, Barbara H.

2013-01-01

Use of existing marine protected areas (MPAs) by far-ranging marine turtles can be determined using satellite telemetry. Because of a lack of information on MPA use by marine turtles in the Gulf of Mexico, we used satellite transmitters in 2010 and 2011 to track movements of 11 adult female breeding green turtles (Chelonia mydas) tagged in Dry Tortugas National Park (DRTO), in the Gulf of Mexico, south Florida, USA. Throughout the study period, turtles emerged every 9–18 days to nest. During the intervals between nesting episodes (i.e., inter-nesting periods), the turtles consistently used a common core-area within the DRTO boundary, determined using individual 50% kernel-density estimates (KDEs). We mapped the area in DRTO where individual turtle 50% KDEs overlapped using the USGS Along-Track Reef-Imaging System, and determined the diversity and distribution of various benthic-cover types within the mapped area. We also tracked turtles post-nesting as they transited to foraging sites 5–282 km away from tagging beaches; these sites were located both within DRTO and in the surrounding area of the Florida Keys and Florida Keys National Marine Sanctuary (FKNMS), a regional MPA. Year-round residency of 9 out of 11 individuals (82%) both within DRTO and in the FKNMS represents novel non-migratory behavior, which offers an opportunity for conservation of this imperiled species at both local and regional scales. These data comprise the first satellite-tracking results on adult nesting green turtles at this remote study site. Additional tracking could reveal whether the distinct inter-nesting and foraging sites delineated here will be repeatedly used in the future by these and other breeding green turtles.

Post-Wildfire Potential for Carbon and Nitrogen Sequestration in the Southwestern United States in Restored Ephemeral and Intermittent Stream Channels

NASA Astrophysics Data System (ADS)

Callegary, J. B.; Norman, L.; Eastoe, C. J.; Sankey, J. B.; Youberg, A.

2016-12-01

The Kemp's ridley sea turtle (Lepidochelys kempii) is the most endangered sea turtle in the world, largely due to the limited geographic range of its nesting habitat. In the U.S., the majority of nesting occurs along Padre Island National Seashore (PAIS) in Texas. There has been limited research regarding the connection between beach geomorphology and Kemp's ridley nesting patterns, but studies concerning other sea turtle species suggest that certain beach geomorphology variables, such as beach slope and width, influence nest site selection. This research investigates terrestrial habitat variability of the Kemp's ridley sea turtle and quantifies the connection between beach geomorphology and Kemp's ridley nest site selection on PAIS and South Padre Island, Texas. Airborne topographic lidar data collected annually along the Texas coast from 2009 through 2012 was utilized to extract beach geomorphology characteristics, such as beach slope and width, dune height, and surface roughness, among others. The coordinates of observed Kemp's ridley nests from corresponding years were integrated with the aforementioned data in statistical models, which analyzed the influence of both general trends in geomorphology and individual morphologic variables on nest site selection. This research identified the terrestrial habitat variability of the Kemp's ridley and quantified the range of geomorphic characteristics of nesting beaches. Initial results indicate that dune width, beach width, and wind speed are significant variables in relation to nest presence, using an alpha of 0.1. Higher wind speeds and narrower beaches and foredunes favor nest presence. The average nest elevation is 1.13 m above mean sea level, which corresponds to the area directly below the potential vegetation line, and the majority of nesting occurs between the elevations of 0.68 m and 1.4 m above mean sea level. The results of this study include new information regarding Kemp's ridley beach habitat and its influence on nesting patterns that could be useful for the conservation and management of the species.

Comparison of Food Habits of the Northern Saw-whet Owl (Aegolius acadicus) and the Western Screech-owl (Otus kennicottii) in Southwestern Idaho

Treesearch

Charlotte Rains

1997-01-01

I compared the breeding-season diets of Northern Saw-whet Owls (Aegolius acadicus) and Western Screech-owls (Otus kennicottii). Prey items were obtained from regurgitated pellets collected from saw-whet owl and screech-owl nests found in nest boxes in the Snake River Birds of Prey National Conservation Area in southwestern Idaho....

Baseline plasma corticosterone, haematological and biochemical results in nesting and rehabilitating loggerhead sea turtles (Caretta caretta).

PubMed

Flower, Jennifer E; Norton, Terry M; Andrews, Kimberly M; Nelson, Steven E; Parker, Clare E; Romero, L Michael; Mitchell, Mark A

2015-01-01

The evaluation of hormonal responses to stress in reptiles relies on acquisition of baseline corticosterone concentrations; however, the stress associated with the restraint needed to collect the blood samples can affect the results. The purpose of this study was to determine a time limit for the collection of blood samples to evaluate baseline corticosterone, haematological and biochemical results in nesting (n = 11) and rehabilitating (n = 16) loggerhead sea turtles (Caretta caretta). Blood samples were collected from the dorsal cervical sinus of each turtle immediately after touching the animal (t 0; 0-3 min) and 3 (t 3; 3-6 min), 6 (t 6; 6-9 min; nesting turtles only), 10 (t 10; 10-13 min) and 30 min (t 30; rehabilitating turtles only) after the initial hands-on time. Consistent between the rehabilitating and nesting turtles, there was a subtle yet significant increase in white blood cell counts over time. Despite the fact that white blood cell counts increased during the sampling period, there was no direct correlation between white blood cell count and corticosterone in the sampled turtles. In the nesting turtles, significant elevations in corticosterone were noted between t 0 and t 3 (P = 0.014) and between t 0 and t 6 (P = 0.022). Values at t 10 were not significantly different from those at t 0 (P = 0.102); however, there was a trend for the corticosterone values to continue to increase. These results suggest that sampling of nesting loggerhead sea turtles within 3 min of handling will provide baseline corticosterone concentrations in their natural environment. Significant elevations in corticosterone were also noted in the rehabilitating loggerhead sea turtles between t 0 and t 10 (P = 0.02) and between t 0 and t 30 of sampling (P = 0.0001). These results suggest that sampling of loggerhead sea turtles within 6 min of handling should provide baseline corticosterone concentrations in a rehabilitation setting. The delay in the corticosterone response noted in the rehabilitating turtles may be associated with the daily contact (visual or direct) they have with their human caretakers.

Reproductive Ecology and Habitat Use of Pacific Black Scoters (Melanitta nigra americana) Nesting on the Yukon-Kuskokwim Delta, Alaska

USGS Publications Warehouse

Schamber, Jason L.

2010-01-01

Abundance indices of Black Scoters (Melanitta nigra. americana) breeding in Alaska indicate a long-term population decline without obvious cause (s). However, few life history data are available for the species in North America. In 2001–2004, information was collected on nesting habitat and reproductive parameters (i.e. components of productivity) from a population of Black Scoters nesting on the Yukon-Kuskokwim Delta, Alaska. A total of 157 nests were found over four years. Primarily, nests were among dense vegetation in shrub edge habitat, predominantly dwarf birch (Betula glandulosa) and Alaska spiraea (Spiraea beauverdiana), an average of 58 m from water. Females initiated nests from 11 June and 17 July across years. Clutch size averaged 7.5 eggs and did not vary annually. Nest success was highly variable among years and ranged from 0.01 to 0.37. Duckling survival to 30 days old varied among years, and ranged from 0.09 – 0.35. Nest success was poor in three of four years, likely due to predation by Red Fox (Vulpes vulpes). Black Scoters appear to have low but variable productivity, consistent with life-history patterns of other sea duck species. Information gained will direct future demographic research on Black Scoters, and highlights knowledge gaps impeding management strategies needed for population recovery.

Reproductive characteristics of migratory golden eagles in Denali National Park, Alaska

USGS Publications Warehouse

McIntyre, Carol L.; Adams, Layne G.

1999-01-01

We describe reproductive characteristics of Golden Eagles (Aquila chrysaetos) breeding in Denali National Park, Alaska during an entire snowshoe hare (Lepus americanus) cycle, 1988-1997. Data on nesting eagles were collected at 58 to 72 nesting areas annually using two aerial surveys. Surveys were conducted during the incubation period to determine occupancy and nesting activities and late in the nestling period to count nestlings and determine nesting success. Annual occupancy rates of nesting areas did not vary significantly, whereas laying rates, success rates, and mean brood size varied significantly over the study period. Fledgling production for the study population varied sevenfold during the ten-year period. Laying rates, mean brood size, and overall population productivity were significantly correlated with abundance of cyclic snowshoe hare and Willow Ptarmigan (Lugopus lagopus) populations. Reproductive rates of Golden Eagles in Denali were similar to those of Golden Eagles from other high latitude study areas in North America, but lower than for Golden Eagles from temperate zone study areas in North America.

Relatedness predicts multiple measures of investment in cooperative nest construction in sociable weavers

PubMed Central

Leighton, Gavin M.; Echeverri, Sebastian; Heinrich, Dirk; Kolberg, Holger

2015-01-01

Although communal goods are often critical to society, they are simultaneously susceptible to exploitation and are evolutionarily stable only if mechanisms exist to curtail exploitation. Mechanisms such as punishment and kin selection have been offered as general explanations for how communal resources can be maintained. Evidence for these mechanisms comes largely from humans and social insects, leaving their generality in question. To assess how communal resources are maintained, we observed cooperative nest construction in sociable weavers (Philetairus socius). The communal nest of sociable weavers provides thermal benefits for all individuals but requires continual maintenance. We observed cooperative nest construction and also recorded basic morphological characteristics. We also collected blood samples, performed next-generation sequencing, and isolated 2358 variable single nucleotide polymorphisms (SNPs) to estimate relatedness. We find that relatedness predicts investment in cooperative nest construction, while no other morphological characters significantly explain cooperative output. We argue that indirect benefits are a critical fitness component for maintaining the cooperative behavior that maintains the communal good. PMID:26726282

Diet and trophic characteristics of great horned owls in southwestern Idaho

USGS Publications Warehouse

Marti, C.D.; Kochert, Michael N.

1996-01-01

We studied the diet of Great Horned Owls (Bubo virginianus) in the Snake River Birds of Prey National Conservation Area in southwestern Idaho for 14 breeding seasons. The diet included 89.2% mammals by number and 91.2% by mass. Kangaroo rats (Dipodomys spp.) were the most common prey overall, but montane voles (Microtus montanus), Peromyscus spp., Great Basin pocket mice (Perognathus parvus) and Townsend's pocket gophers (Thomomys towsendii) were most common at some collection sites. Estimated mean mass of prey was 44.5 g (range 20.5-82.6 g at individual nests), and food-niche breadth (dietary diversity estimated by $1/\\Sigma p_{{\\rm i}}{}^{2}$) was 7.32 (range 1.55-6.85 at individual nests). Lower mean overlap in diet occurred between nests in the same year than between years at the same nest. Species of prey taken were significantly correlated with the general habitat types in which the nest was located. Diets of owls in areas of intensive agriculture overlapped little (42%) with those in rangeland habitats.

Mercury and other element exposure to tree swallows (Tachycineta bicolor) nesting on Lostwood National Wildlife Refuge, North Dakota

USGS Publications Warehouse

Custer, T.W.; Custer, Christine M.; Johnson, K.M.; Hoffman, D.J.

2008-01-01

Elevated mercury concentrations in water were reported in the prairie wetlands at Lostwood National Wildlife Refuge, ND. In order to determine whether wildlife associated with these wetlands was exposed to and then accumulated higher mercury concentrations than wildlife living near more permanent wetlands (e.g. lakes), tree swallow (Tachycineta bicolor) eggs and nestlings were collected from nests near seasonal wetlands, semi-permanent wetlands, and lakes. Mercury concentrations in eggs collected near seasonal wetlands were higher than those collected near semi-permanent wetlands or lakes. In contrast, mercury concentrations in nestling livers did not differ among wetland types. Mercury and other element concentrations in tree swallow eggs and nestlings collected from all wetlands were low. As suspected from these low concentrations, mercury concentrations in sample eggs were not a significant factor explaining the hatching success of the remaining eggs in each clutch.

Foraging of Psilocybe basidiocarps by the leaf-cutting ant Acromyrmex lobicornis in Santa Fé, Argentina.

PubMed

Masiulionis, Virginia E; Weber, Roland Ws; Pagnocca, Fernando C

2013-12-01

It is generally accepted that material collected by leaf-cutting ants of the genus Acromyrmex consists solely of plant matter, which is used in the nest as substrate for a symbiotic fungus providing nutrition to the ants. There is only one previous report of any leaf-cutting ant foraging directly on fungal basidiocarps. Basidiocarps of Psilocybe coprophila growing on cow dung were actively collected by workers of Acromyrmex lobicornis in Santa Fé province, Argentina. During this behaviour the ants displayed typical signals of recognition and continuously recruited other foragers to the task. Basidiocarps of different stages of maturity were being transported into the nest by particular groups of workers, while other workers collected plant material. The collection of mature basidiocarps with viable spores by leaf-cutting ants in nature adds substance to theories relating to the origin of fungiculture in these highly specialized social insects.

Collective defence portfolios of ant hosts shift with social parasite pressure

PubMed Central

Jongepier, Evelien; Kleeberg, Isabelle; Job, Sylwester; Foitzik, Susanne

2014-01-01

Host defences become increasingly costly as parasites breach successive lines of defence. Because selection favours hosts that successfully resist parasitism at the lowest possible cost, escalating coevolutionary arms races are likely to drive host defence portfolios towards ever more expensive strategies. We investigated the interplay between host defence portfolios and social parasite pressure by comparing 17 populations of two Temnothorax ant species. When successful, collective aggression not only prevents parasitation but also spares host colonies the cost of searching for and moving to a new nest site. However, once parasites breach the host's nest defence, host colonies should resort to flight as the more beneficial resistance strategy. We show that under low parasite pressure, host colonies more likely responded to an intruding Protomognathus americanus slavemaker with collective aggression, which prevented the slavemaker from escaping and potentially recruiting nest-mates. However, as parasite pressure increased, ant colonies of both host species became more likely to flee rather than to fight. We conclude that host defence portfolios shift consistently with social parasite pressure, which is in accordance with the degeneration of frontline defences and the evolution of subsequent anti-parasite strategies often invoked in hosts of brood parasites. PMID:25100690

Prey and mound disassembly, manipulation and transport by fire ant collectives

NASA Astrophysics Data System (ADS)

Dutta, Bahnisikha; Monaenkova, Daria; Goodisman, Michael A.; Goldman, Daniel

Fire ants inhabit subterranean nests covered by a hemispherical mound of soil permeated by narrow ( 1 body length diameter) tunnels. Fire ants can use their mound for long-term food storage [Gayahan &Tschinkel, J. Insect Sci.,2008]. Since mound tunnels are narrow, we expect that in addition to prey manipulation, mound reconfiguration could also be an important aspect of the food storage strategy. Ant colonies collected from wild were allowed to build nests in containers filled with clay soil in the laboratory. These colonies were offered diverse prey embedded with lead markers, including mealworms, crickets and shrimp. Ant-prey-soil interactions on the nest surface were recorded using overhead video and subsurface using x-ray imaging. Individual ants involved in prey storage exhibited three distinct behaviors: prey maneuvering, prey dissection and mound reconfiguration. Small prey (e.g. mealworms) were collectively carried intact into the mound through a tunnel, and then disassembled within the mound. Larger prey (e.g. shrimp) were dismantled into small pieces above the surface and carried to mound tunnels. The bodies of hard medium-sized prey (e.g. crickets) were buried after limb removal and then disassembled and moved into tunnels. Soil reconfiguration occurred in all cases.

Movement patterns of Bar-headed Geese Anser indicus during breeding and post-breeding periods at Qinghai Lake, China

USGS Publications Warehouse

Cui, Peng; Hou, Yuansheng; Tang, Mingjie; Zhang, Haiting; Zuohua, Yuanchun; Yin, Zuohua; Li, Tianxian; Guo, Shan; Xing, Zhi; He, Yubang; Prosser, Diann J.; Newman, Scott H.; Takekawa, John Y.; Yan, Baoping; Lei, Fumin

2011-01-01

The highly pathogenic avian influenza (HPAI) H5N1 outbreak at Qinghai Lake, China, in 2005 caused the death of over 6,000 migratory birds, half of which were Bar-headed Geese Anser indicus. Understanding the movements of this species may inform monitoring of outbreak risks for HPAI viruses; thus, we investigated the movement patterns of 29 Bar-headed Geese at Qinghai Lake, China during 2007 and 2008 by using high resolution GPS satellite telemetry. We described the movements and distribution of marked Bar-headed Geese during the pre-nesting, nesting, and moulting periods. Of 21 Bar-headed Geese with complete transmission records, 3 moved to other areas during the nesting period: 2 to Jianghe wetland (50 km northwest of Qinghai Lake) and 1 to Cuolongka Lake (220 km northwest of Qinghai Lake) during the nesting period. We identified nesting attempts of 7 of the marked geese at Qinghai Lake. Four completed successful nesting attempts according to our rules of judgment for the breeding status, and 2 geese lost broods soon after hatching (hereafter referred to as unsuccessful breeders). Of 18 geese present at Qinghai Lake during the nesting period, 9 (6 non-breeders, 2 successful breeders and 1 unsuccessful breeder) remained at Qinghai Lake during the moulting period; and 9 (5 non-breeders, 4 unsuccessful breeders) left Qinghai Lake for moulting. Kuhai Lake, Donggeicuona Lake, Alake Lake, Zhaling-Eling Lake area and Huangheyuan wetland area were used as moulting sites. Geese that moulted at Qinghai Lake, Cuolongka Lake, Kuhai Lake, Donggeicuona Lake and Alake Lake also moved to Zhaling-Eling Lake area or Huangheyuan wetland area and stayed there for several days prior to autumn migration. Mean home range and core area estimates did not differ significantly by sex, year and between breeders and non-breeders.

Impacts of flamingos on saline lake margin and shallow lacustrine sediments in the Kenya Rift Valley

NASA Astrophysics Data System (ADS)

Scott, Jennifer J.; Renaut, Robin W.; Owen, R. Bernhart

2012-11-01

Studies of modern, Holocene, and Pleistocene sediments around saline to hypersaline, alkaline Lake Bogoria and Lake Magadi show that evidence of flamingo activity in marginal areas of these lakes is nearly ubiquitous. Flamingos produce discrete structures such as webbed footprints (~ 9 cm long, ~ 11 cm wide) and nest mounds (~ 30 cm wide, ~ 20 cm high), and they also extensively rework sediments in delta front, delta plain, and shoreline areas. Large (~ 0.5-2 cm in diameter), pinched, 'bubble pores' and ped-like mud clumps are formed by the trampling and churning of wet clay-rich sediments in these settings. Flamingo nest mounds, although superficially similar to some thrombolite mounds, are typically internally structureless, unless formed on pre-existing sediments that preserve internal structures. The flamingo mounds consist of a dense, packed oval-shaped core, a surrounding 'body' of packed sediment, and an external layer with a ped-like texture of clumped mud. The nests may contain open holes from roots or feather shafts incorporated into the nest, and (or) burrows produced once the nests are abandoned. In areas with high densities of flamingos, lake margin sediments may be preferentially compacted, particularly at breeding sites, and become resistant to subaerial erosion and the effects of transgressive ravinement on time scales ranging from seasons to tens of thousands of years. The relatively well-compacted nest mounds and associated sediments also contribute to the stability of delta distributary channels during regressive-transgressive cycles, and can lead to the minor channelization of unconfined flows where currents are diverted around nest mounds. Pleistocene exhumed surfaces of relatively well-indurated lake margin sediments at Lake Bogoria and Lake Magadi that are interpreted as combined regressive and transgressive surfaces (flooding surface/sequence boundary) preserve evidence of flamingo activities, and are overlain by younger, porous lacustrine silts that preserve large bubble pores produced by flamingos.

Movement patterns of Bar-headed Geese Anser indicus during breeding and post-breeding periods at Qinghai Lake, China

USGS Publications Warehouse

Cui, P.; Hou, Y.; Tang, M.; Zhang, H.; Zhou, Y.; Yin, Z.; Li, T.; Guo, S.; Xing, Z.; He, Y.; Prosser, D.J.; Newman, S.H.; Takekawa, John Y.; Yan, B.; Lei, F.

2011-01-01

The highly pathogenic avian influenza (HPAI) H5N1 outbreak at Qinghai Lake, China, in 2005 caused the death of over 6,000 migratory birds, half of which were Bar-headed Geese Anser indicus. Understanding the movements of this species may inform monitoring of outbreak risks for HPAI viruses; thus, we investigated the movement patterns of 29 Bar-headed Geese at Qinghai Lake, China during 2007 and 2008 by using high resolution GPS satellite telemetry. We described the movements and distribution of marked Bar-headed Geese during the pre-nesting, nesting, and moulting periods. Of 21 Bar-headed Geese with complete transmission records, 3 moved to other areas during the nesting period: 2 to Jianghe wetland (50 km northwest of Qinghai Lake) and 1 to Cuolongka Lake (220 km northwest of Qinghai Lake) during the nesting period. We identified nesting attempts of 7 of the marked geese at Qinghai Lake. Four completed successful nesting attempts according to our rules of judgment for the breeding status, and 2 geese lost broods soon after hatching (hereafter referred to as unsuccessful breeders). Of 18 geese present at Qinghai Lake during the nesting period, 9 (6 non-breeders, 2 successful breeders and 1 unsuccessful breeder) remained at Qinghai Lake during the moulting period; and 9 (5 non-breeders, 4 unsuccessful breeders) left Qinghai Lake for moulting. Kuhai Lake, Donggeicuona Lake, Alake Lake, Zhaling-Eling Lake area and Huangheyuan wetland area were used as moulting sites. Geese that moulted at Qinghai Lake, Cuolongka Lake, Kuhai Lake, Donggeicuona Lake and Alake Lake also moved to Zhaling-Eling Lake area or Huangheyuan wetland area and stayed there for several days prior to autumn migration. Mean home range and core area estimates did not differ significantly by sex, year and between breeders and non-breeders. ?? 2010 Dt. Ornithologen-Gesellschaft e.V.

Parallel simulation of tsunami inundation on a large-scale supercomputer

NASA Astrophysics Data System (ADS)

Oishi, Y.; Imamura, F.; Sugawara, D.

2013-12-01

An accurate prediction of tsunami inundation is important for disaster mitigation purposes. One approach is to approximate the tsunami wave source through an instant inversion analysis using real-time observation data (e.g., Tsushima et al., 2009) and then use the resulting wave source data in an instant tsunami inundation simulation. However, a bottleneck of this approach is the large computational cost of the non-linear inundation simulation and the computational power of recent massively parallel supercomputers is helpful to enable faster than real-time execution of a tsunami inundation simulation. Parallel computers have become approximately 1000 times faster in 10 years (www.top500.org), and so it is expected that very fast parallel computers will be more and more prevalent in the near future. Therefore, it is important to investigate how to efficiently conduct a tsunami simulation on parallel computers. In this study, we are targeting very fast tsunami inundation simulations on the K computer, currently the fastest Japanese supercomputer, which has a theoretical peak performance of 11.2 PFLOPS. One computing node of the K computer consists of 1 CPU with 8 cores that share memory, and the nodes are connected through a high-performance torus-mesh network. The K computer is designed for distributed-memory parallel computation, so we have developed a parallel tsunami model. Our model is based on TUNAMI-N2 model of Tohoku University, which is based on a leap-frog finite difference method. A grid nesting scheme is employed to apply high-resolution grids only at the coastal regions. To balance the computation load of each CPU in the parallelization, CPUs are first allocated to each nested layer in proportion to the number of grid points of the nested layer. Using CPUs allocated to each layer, 1-D domain decomposition is performed on each layer. In the parallel computation, three types of communication are necessary: (1) communication to adjacent neighbours for the finite difference calculation, (2) communication between adjacent layers for the calculations to connect each layer, and (3) global communication to obtain the time step which satisfies the CFL condition in the whole domain. A preliminary test on the K computer showed the parallel efficiency on 1024 cores was 57% relative to 64 cores. We estimate that the parallel efficiency will be considerably improved by applying a 2-D domain decomposition instead of the present 1-D domain decomposition in future work. The present parallel tsunami model was applied to the 2011 Great Tohoku tsunami. The coarsest resolution layer covers a 758 km × 1155 km region with a 405 m grid spacing. A nesting of five layers was used with the resolution ratio of 1/3 between nested layers. The finest resolution region has 5 m resolution and covers most of the coastal region of Sendai city. To complete 2 hours of simulation time, the serial (non-parallel) computation took approximately 4 days on a workstation. To complete the same simulation on 1024 cores of the K computer, it took 45 minutes which is more than two times faster than real-time. This presentation discusses the updated parallel computational performance and the efficient use of the K computer when considering the characteristics of the tsunami inundation simulation model in relation to the characteristics and capabilities of the K computer.

Remote monitoring of parental incubation conditions in the greater sandhill crane

USGS Publications Warehouse

Gee, G.F.; Hatfield, J.; Howey, P.J.

1995-01-01

To monitor incubation conditions in nests of greater sandhill cranes, a radiotransmitting egg was built using six temperature sensors, a position sensor, and a light sensor. Sensor readings were received, along with time of observations, and stored in a computer. The egg was used to monitor incubation in nests of six pairs of cranes during 1987 and 1988. Ambient temperature was also measured. Analysis of covariance (ANCOVA) was used to relate highest egg temperature, core egg temperature, and lowest egg temperature to ambient temperature, time since the egg was last turned, and time since the beginning of incubation. Ambient temperature had the greatest effect on egg temperature (P 0.0001), followed by the time since the beginning of incubation and time since the egg was last turned. Pair effect, the class variable in the ANCOVA. was also very significant (P < 0.0001). A nine-term Fourier series was used to estimate the average core egg temperature versus time of day and was found to fit the data well (r2 = 0.94). The Fourier series will be used to run a mechanical incubator to simulate natural incubation conditions for cranes.

Extracting samples of high diversity from thematic collections of large gene banks using a genetic-distance based approach

PubMed Central

2010-01-01

Background Breeding programs are usually reluctant to evaluate and use germplasm accessions other than the elite materials belonging to their advanced populations. The concept of core collections has been proposed to facilitate the access of potential users to samples of small sizes, representative of the genetic variability contained within the gene pool of a specific crop. The eventual large size of a core collection perpetuates the problem it was originally proposed to solve. The present study suggests that, in addition to the classic core collection concept, thematic core collections should be also developed for a specific crop, composed of a limited number of accessions, with a manageable size. Results The thematic core collection obtained meets the minimum requirements for a core sample - maintenance of at least 80% of the allelic richness of the thematic collection, with, approximately, 15% of its size. The method was compared with other methodologies based on the M strategy, and also with a core collection generated by random sampling. Higher proportions of retained alleles (in a core collection of equal size) or similar proportions of retained alleles (in a core collection of smaller size) were detected in the two methods based on the M strategy compared to the proposed methodology. Core sub-collections constructed by different methods were compared regarding the increase or maintenance of phenotypic diversity. No change on phenotypic diversity was detected by measuring the trait "Weight of 100 Seeds", for the tested sampling methods. Effects on linkage disequilibrium between unlinked microsatellite loci, due to sampling, are discussed. Conclusions Building of a thematic core collection was here defined by prior selection of accessions which are diverse for the trait of interest, and then by pairwise genetic distances, estimated by DNA polymorphism analysis at molecular marker loci. The resulting thematic core collection potentially reflects the maximum allele richness with the smallest sample size from a larger thematic collection. As an example, we used the development of a thematic core collection for drought tolerance in rice. It is expected that such thematic collections increase the use of germplasm by breeding programs and facilitate the study of the traits under consideration. The definition of a core collection to study drought resistance is a valuable contribution towards the understanding of the genetic control and the physiological mechanisms involved in water use efficiency in plants. PMID:20576152

Foraging distance and home range of Cassin's Auklets nesting at two colonies in the California Channel Islands

USGS Publications Warehouse

Adams, Josh; Takekawa, John Y.; Carter, Harry R.

2004-01-01

We radio-marked 99 Cassin's Auklets (Ptychoramphus aleuticus) nesting at two colonies, Prince Island and Scorpion Rock, separated by 90 km in the California Channel Islands to quantify foraging distance, individual home-range area, and colony-based foraging areas during three consecutive breeding seasons. Auklets generally foraged < 30 km from each colony in all years. Core foraging areas (50% fixed kernel) from Prince Island in 1999-2001 were north to northeast of the colony over the insular shelf near the shelfbreak. Core foraging areas from Scorpion Rock in 2000-2001 occurred in two focal areas: the Anacapa Passage, a narrow interisland passage adjacent to the colony, and over the southeastern Santa Barbara Channel. During 2000, intercolony foraging areas overlapped by 10%; however, auklets from each colony used the overlapping area at different times. Equivalent-sample-size resampling indicated Prince Island foraging area (1216 ?? 654 km2) was twice that of Scorpion Rock (598 ?? 204 km2). At Prince Island, mean individual distances, home-range areas, and colony-based activity areas were greater for females than males, especially during 2001. At Prince Island, core foraging areas of females and males, pooled separately, overlapped by 63% in 1999 and 2000, and by 35% in 2001. Postbreeding auklets from both colonies dispersed northward and moved to active upwelling centers off central California, coincident with decreased upwelling and sea-surface warming throughout the Santa Barbara Channel.

The effects of in utero bisphenol A exposure on the ovaries in multiple generations of mice

PubMed Central

Berger, Amelia; Ziv-Gal, Ayelet; Cudiamat, Jonathan; Wang, Wei; Zhou, Changqing; Flaws, Jodi A.

2016-01-01

Bisphenol A is used in polycarbonate plastics and epoxy resins. Previous studies show that in utero BPA exposure inhibits germ cell nest breakdown in the F1 generation of mice, but its effects on germ cell nest breakdown and on the ovary in the F2–F3 generations were unknown. Thus, we tested the hypothesis that BPA has transgenerational effects on the ovary. Mice were exposed to BPA in utero (BPA 0.5, 20, or 50 µg/kg/day), and ovaries were collected at postnatal days (PND) 4 and 21 from the F1–F3 generations and subjected to histological evaluation and gene expression analyses. In utero BPA exposure did not have transgenerational effects on germ cell nest breakdown and gene expression on PND 4, but it caused transgenerational changes in expression in multiple genes on PND 21. Collectively, these data indicate that in utero BPA exposure has some transgenerational effects in mice. PMID:26746108

Organochlorine pesticides, PCBs, and mercury in Osprey (Pandion haliaetus) eggs from the Upper Volga River, Russia

USGS Publications Warehouse

Henny, Charles J.; Galushin, V.M.; Kuznetsov, A.V.; Meyburg, B.-U.; Chancellor, R.D.; Ferrero, J.J.

1998-01-01

The Osprey population associated with Darwin Nature Reserve and the Rybinsk Reservoir increased from only a few pairs prior to the creation of the reservoir in the late 1940s , to about 45-50 pairs in 1994. Productivity rates were excellent in 1988 and 1989 (1.38 young/occupied nest), but extremely low in 1987 (0.47 young/occupied nest). A chemical spill into the Volga River in early 1987 resulted in a massive fish kill, which was believed responsible for low production that year. With the exception of the year of the chemical spill and 1992 (the year an egg was collected from 10 of 11 nests studied), production was comparable to rates observed in stable or increasing populations in Byelorussia, Finland, and Sweden. The p.p'-DDE (DDE), polychlorinated biphenyl (PCB), and mercury concentrations from eggs collected in 1992 were below known effect levels and eggshell thickness showed only 6.3 % thinning - an amount not associated with reproductive problems.

Nest suitability, fine-scale population structure and male-mediated dispersal of a solitary ground nesting bee in an urban landscape.

PubMed

López-Uribe, Margarita M; Morreale, Stephen J; Santiago, Christine K; Danforth, Bryan N

2015-01-01

Bees are the primary pollinators of flowering plants in almost all ecosystems. Worldwide declines in bee populations have raised awareness about the importance of their ecological role in maintaining ecosystem functioning. The naturally strong philopatric behavior that some bee species show can be detrimental to population viability through increased probability of inbreeding. Furthermore, bee populations found in human-altered landscapes, such as urban areas, can experience lower levels of gene flow and effective population sizes, increasing potential for inbreeding depression in wild bee populations. In this study, we investigated the fine-scale population structure of the solitary bee Colletes inaequalis in an urbanized landscape. First, we developed a predictive spatial model to detect suitable nesting habitat for this ground nesting bee and to inform our field search for nests. We genotyped 18 microsatellites in 548 female individuals collected from nest aggregations throughout the study area. Genetic relatedness estimates revealed that genetic similarity among individuals was slightly greater within nest aggregations than among randomly chosen individuals. However, genetic structure among nest aggregations was low (Nei's GST = 0.011). Reconstruction of parental genotypes revealed greater genetic relatedness among females than among males within nest aggregations, suggesting male-mediated dispersal as a potentially important mechanism of population connectivity and inbreeding avoidance. Size of nesting patch was positively correlated with effective population size, but not with other estimators of genetic diversity. We detected a positive trend between geographic distance and genetic differentiation between nest aggregations. Our landscape genetic models suggest that increased urbanization is likely associated with higher levels of inbreeding. Overall, these findings emphasize the importance of density and distribution of suitable nesting patches for enhancing bee population abundance and connectivity in human dominated habitats and highlights the critical contribution of landscape genetic studies for enhanced conservation and management of native pollinators.

Nest Suitability, Fine-Scale Population Structure and Male-Mediated Dispersal of a Solitary Ground Nesting Bee in an Urban Landscape

PubMed Central

López-Uribe, Margarita M.; Morreale, Stephen J.; Santiago, Christine K.; Danforth, Bryan N.

2015-01-01

Bees are the primary pollinators of flowering plants in almost all ecosystems. Worldwide declines in bee populations have raised awareness about the importance of their ecological role in maintaining ecosystem functioning. The naturally strong philopatric behavior that some bee species show can be detrimental to population viability through increased probability of inbreeding. Furthermore, bee populations found in human-altered landscapes, such as urban areas, can experience lower levels of gene flow and effective population sizes, increasing potential for inbreeding depression in wild bee populations. In this study, we investigated the fine-scale population structure of the solitary bee Colletes inaequalis in an urbanized landscape. First, we developed a predictive spatial model to detect suitable nesting habitat for this ground nesting bee and to inform our field search for nests. We genotyped 18 microsatellites in 548 female individuals collected from nest aggregations throughout the study area. Genetic relatedness estimates revealed that genetic similarity among individuals was slightly greater within nest aggregations than among randomly chosen individuals. However, genetic structure among nest aggregations was low (Nei’s GST = 0.011). Reconstruction of parental genotypes revealed greater genetic relatedness among females than among males within nest aggregations, suggesting male-mediated dispersal as a potentially important mechanism of population connectivity and inbreeding avoidance. Size of nesting patch was positively correlated with effective population size, but not with other estimators of genetic diversity. We detected a positive trend between geographic distance and genetic differentiation between nest aggregations. Our landscape genetic models suggest that increased urbanization is likely associated with higher levels of inbreeding. Overall, these findings emphasize the importance of density and distribution of suitable nesting patches for enhancing bee population abundance and connectivity in human dominated habitats and highlights the critical contribution of landscape genetic studies for enhanced conservation and management of native pollinators. PMID:25950429

Identifying effective actions to guide volunteer-based and nationwide conservation efforts for a ground-nesting farmland bird.

PubMed

Santangeli, Andrea; Arroyo, Beatriz; Millon, Alexandre; Bretagnolle, Vincent

2015-08-01

1. Modern farming practices threaten wildlife in different ways, and failure to identify the complexity of multiple threats acting in synergy may result in ineffective management. To protect ground-nesting birds in farmland, monitoring and mitigating impacts of mechanical harvesting is crucial. 2. Here, we use 6 years of data from a nationwide volunteer-based monitoring scheme of the Montagu's harrier, a ground-nesting raptor, in French farmlands. We assess the effectiveness of alternative nest protection measures and map their potential benefit to the species. 3. We show that unprotected nests in cultivated land are strongly negatively affected by harvesting and thus require active management. Further, we show that protection from harvesting alone (e.g. by leaving a small unharvested buffer around the nest) is impaired by post-harvest predation at nests that become highly conspicuous after harvest. Measures that simultaneously protect from harvesting and predation (by adding a fence around the nest) significantly enhance nest productivity. 4. The map of expected gain from nest protection in relation to available volunteers' workforce pinpoints large areas of high expected gain from nest protection that are not matched by equally high workforce availability. This mismatch suggests that the impact of nest protection can be further improved by increasing volunteer efforts in key areas where they are low relative to the expected gain they could have. 5. Synthesis and applications . This study shows that synergistic interplay of multiple factors (e.g. mechanical harvesting and predation) may completely undermine the success of well-intentioned conservation efforts. However, identifying areas where the greatest expected gains can be achieved relative to effort expended can minimize the risk of wasted volunteer actions. Overall, this study underscores the importance of citizen science for collecting large-scale data useful for producing science and ultimately informs large-scale evidence-based conservation actions within an adaptive management framework.

Production of fullerenic nanostructures in flames

DOEpatents

Howard, Jack B.; Vander Sande, John B.; Chowdhury, K. Das

1999-01-01

A method for the production of fullerenic nanostructures is described in which unsaturated hydrocarbon fuel and oxygen are combusted in a burner chamber at a sub-atmospheric pressure, thereby establishing a flame. The condensibles of the flame are collected at a post-flame location. The condensibles contain fullerenic nanostructures, such as single and nested nanotubes, single and nested nanoparticles and giant fullerenes. The method of producing fullerenic soot from flames is also described.

Production Of Fullerenic Soot In Flames

DOEpatents

Howard, Jack B.; Vander Sande, John B.; Chowdhury, K. Das

2000-12-19

A method for the production of fullerenic nanostructures is described in which unsaturated hydrocarbon fuel and oxygen are combusted in a burner chamber at a sub-atmospheric pressure, thereby establishing a flame. The condensibles of the flame are collected at a post-flame location. The condensibles contain fullerenic nanostructures, such as single and nested nanotubes, single and nested nanoparticles and giant fullerenes. The method of producing fullerenic soot from flames is also described.

Establishment of Vespa bicolor in Taiwan (Hymenoptera: Vespidae)

PubMed Central

Sung, I-Hsin; Lu, Sheng-Shan; Chao, Jung-Tai; Yeh, Wen-Chi; Lee, Wei-Jie

2014-01-01

Abstract The establishment of a hornet, Vespa bicolor F., in Taiwan was confirmed based on successful field collection of adults of both sexes and two subterranean colonies. Information on nesting habitat, nest measurement, and colony composition of this species are provided in this article. V. bicolor is the ninth hornet species ever recorded from Taiwan. Possible pathway for the introduction of this alien species is also discussed. PMID:25434034

Northern Goshawk diet in Minnesota: An Analysis using video recording systems

USGS Publications Warehouse

Smithers, B.L.; Boal, C.W.; Andersen, D.E.

2005-01-01

We used video-recording systems to collect diet information at 13 Northern Goshawk (Accipiter gentilis) nests in Minnesota during the 2000, 2001, and 2002 breeding seasons. We collected 4871 hr of video footage, from which 652 prey deliveries were recorded. The majority of prey deliveries identified were mammals (62%), whereas birds (38%) composed a smaller proportion of diet. Mammals accounted for 61% of biomass delivered, and avian prey items accounted for 39% of prey biomass. Sciurids and leporids accounted for 70% of the identified prey. Red squirrel (Tamiasciurus hudsonicus), eastern chipmunk (Tamias striatus), and snowshoe hare (Lepus americanus) were the dominant mammals identified in the diet, while American Crow (Corvus brachyrhynchos) and Ruffed Grouse (Bonasa umbellus) were the dominant avian prey delivered to nests. On average, breeding goshawks delivered 2.12 prey items/d, and each delivery averaged 275 g for a total of 551 g delivered/d. However, daily (P < 0.001) and hourly (P = 0.01) delivery rates varied among nests. Delivery rates (P = 0.01) and biomass delivered (P = 0.038) increased with brood size. Diversity and equitability of prey used was similar among nests and was low throughout the study area, most likely due to the dominance of red squirrel in the diet. ?? 2005 The Raptor Research Foundation, Inc.

A test of the nest sanitation hypothesis for the evolution of foreign egg rejection in an avian brood parasite rejecter host species

NASA Astrophysics Data System (ADS)

Luro, Alec B.; Hauber, Mark E.

2017-04-01

Hosts of avian brood parasites have evolved diverse defenses to avoid the costs associated with raising brood parasite nestlings. In egg ejection, the host recognizes and removes foreign eggs laid in its nest. Nest sanitation, a behavior similar in motor pattern to egg ejection, has been proposed repeatedly as a potential pre-adaptation to egg ejection. Here, we separately placed blue 3D-printed, brown-headed cowbird ( Molothrus ater) eggs known to elicit interindividual variation in ejection responses and semi-natural leaves into American robins' ( Turdus migratorius) nests to test proximate predictions that (1) rejecter hosts should sanitize debris from nests more frequently and consistently than accepter hosts and (2) hosts that sanitize their nests of debris prior to the presentation of a foreign egg will be more likely to eject the foreign egg. Egg ejection responses were highly repeatable within individuals yet variable between them, but were not influenced by prior exposure to debris, nor related to sanitation tendencies as a whole, because nearly all individuals sanitized their nests. Additionally, we collected published data for eight different host species to test for a potential positive correlation between sanitation and egg ejection. We found no significant correlation between nest sanitation and egg ejection rates; however, our comparative analysis was limited to a sample size of 8, and we advise that more data from additional species are necessary to properly address interspecific tests of the pre-adaptation hypothesis. In lack of support for the nest sanitation hypothesis, our study suggests that, within individuals, foreign egg ejection is distinct from nest sanitation tendencies, and sanitation and foreign egg ejection may not correlate across species.

An integrated analysis of micro- and macro-habitat features as a tool to detect weather-driven constraints: A case study with cavity nesters.

PubMed

Campobello, D; Lindström, J; Di Maggio, R; Sarà, M

2017-01-01

The effects of climate change on animal populations may be shaped by habitat characteristics at both micro- and macro-habitat level, however, empirical studies integrating these two scales of observation are lacking. As analyses of the effects of climate change commonly rely on data from a much larger scale than the microhabitat level organisms are affected at, this mismatch risks hampering progress in developing understanding of the details of the ecological and evolutionary responses of organisms and, ultimately, effective actions to preserve their populations. Cavity nesters, often with a conservation status of concern, are an ideal model because the cavity is a microenvironment potentially different from the macroenvironment but nonetheless inevitably interacting with it. The lesser kestrel (Falco naumanni) is a cavity nester which was until recently classified by as Vulnerable species. Since 2004, for nine years, we collected detailed biotic and abiotic data at both micro- and macro-scales of observation in a kestrel population breeding in the Gela Plain (Italy), a Mediterranean area where high temperatures may reach lethal values for the nest content. We show that macroclimatic features needed to be integrated with both abiotic and biotic factors recorded at a microscale before reliably predicting nest temperatures. Among the nest types used by lesser kestrels, we detected a preferential occupation of the cooler nest types, roof tiles, by early breeders whereas, paradoxically, late breeders nesting with hotter temperatures occupied the overheated nest holes. Not consistent with such a suggested nest selection, the coolest nest type did not host a higher reproductive success than the overheated nests. We discussed our findings in the light of cavity temperatures and nest types deployed within conservation actions assessed by integrating selected factors at different observation scales.

A test of the nest sanitation hypothesis for the evolution of foreign egg rejection in an avian brood parasite rejecter host species.

PubMed

Luro, Alec B; Hauber, Mark E

2017-04-01

Hosts of avian brood parasites have evolved diverse defenses to avoid the costs associated with raising brood parasite nestlings. In egg ejection, the host recognizes and removes foreign eggs laid in its nest. Nest sanitation, a behavior similar in motor pattern to egg ejection, has been proposed repeatedly as a potential pre-adaptation to egg ejection. Here, we separately placed blue 3D-printed, brown-headed cowbird (Molothrus ater) eggs known to elicit interindividual variation in ejection responses and semi-natural leaves into American robins' (Turdus migratorius) nests to test proximate predictions that (1) rejecter hosts should sanitize debris from nests more frequently and consistently than accepter hosts and (2) hosts that sanitize their nests of debris prior to the presentation of a foreign egg will be more likely to eject the foreign egg. Egg ejection responses were highly repeatable within individuals yet variable between them, but were not influenced by prior exposure to debris, nor related to sanitation tendencies as a whole, because nearly all individuals sanitized their nests. Additionally, we collected published data for eight different host species to test for a potential positive correlation between sanitation and egg ejection. We found no significant correlation between nest sanitation and egg ejection rates; however, our comparative analysis was limited to a sample size of 8, and we advise that more data from additional species are necessary to properly address interspecific tests of the pre-adaptation hypothesis. In lack of support for the nest sanitation hypothesis, our study suggests that, within individuals, foreign egg ejection is distinct from nest sanitation tendencies, and sanitation and foreign egg ejection may not correlate across species.

Factors influencing reproductive performance of northern bobwhite in South Florida

USGS Publications Warehouse

Rolland, V.; Hostetler, J.A.; Hines, T.C.; Percival, H.F.; Oli, M.K.

2011-01-01

Reproductive success is a critical component of individual fitness, and also an important determinant of growth rates of populations characterized by early maturity and high fecundity. We used radiotelemetry data collected during 2003-2008 to estimate reproductive parameters in a declining northern bobwhite (Colinus virginianus) population in South Florida, and to test hypotheses regarding factors influencing these parameters. The overall clutch size was 12.10 ?? 0.22, but females laid more eggs in their first clutch (12.43 ?? 0.24) than in subsequent clutches (10.19 ?? 0.53) within a nesting season. Daily nest survival was higher for first (0.966 ?? 0.003) than subsequent nests (0.936 ?? 0.011). Hatchability (proportion of laid eggs that hatched conditional upon nest survival to hatching) was 0.853 ?? 0.008, but was higher for nests incubated by females (0.873 ?? 0.009) than those incubated by males (0.798 ?? 0.018). The proportion of individuals attempting a second nest was 0.112 ?? 0.024 and 0.281 ?? 0.040 when the first nest was successful and failed, respectively. Hatchability was lower when the nesting habitat was burned the previous winter. We found no evidence that food strip density (a management practice to provide supplemental food) influenced any of the reproductive parameters. Mean summer temperature affected hatchability, nest survival, and proportion of nests incubated by males. Overall, the reproductive output in our study population was lower than that reported for most other bobwhite populations, indicating that low reproductive performance may have contributed to bobwhite population declines in our study site. These results suggest that current management practices, particularly those related to habitat and harvest management, need careful evaluation. ?? 2010 Springer-Verlag.

An integrated analysis of micro- and macro-habitat features as a tool to detect weather-driven constraints: A case study with cavity nesters

PubMed Central

Campobello, D.; Lindström, J.; Di Maggio, R.; Sarà, M.

2017-01-01

The effects of climate change on animal populations may be shaped by habitat characteristics at both micro- and macro-habitat level, however, empirical studies integrating these two scales of observation are lacking. As analyses of the effects of climate change commonly rely on data from a much larger scale than the microhabitat level organisms are affected at, this mismatch risks hampering progress in developing understanding of the details of the ecological and evolutionary responses of organisms and, ultimately, effective actions to preserve their populations. Cavity nesters, often with a conservation status of concern, are an ideal model because the cavity is a microenvironment potentially different from the macroenvironment but nonetheless inevitably interacting with it. The lesser kestrel (Falco naumanni) is a cavity nester which was until recently classified by as Vulnerable species. Since 2004, for nine years, we collected detailed biotic and abiotic data at both micro- and macro-scales of observation in a kestrel population breeding in the Gela Plain (Italy), a Mediterranean area where high temperatures may reach lethal values for the nest content. We show that macroclimatic features needed to be integrated with both abiotic and biotic factors recorded at a microscale before reliably predicting nest temperatures. Among the nest types used by lesser kestrels, we detected a preferential occupation of the cooler nest types, roof tiles, by early breeders whereas, paradoxically, late breeders nesting with hotter temperatures occupied the overheated nest holes. Not consistent with such a suggested nest selection, the coolest nest type did not host a higher reproductive success than the overheated nests. We discussed our findings in the light of cavity temperatures and nest types deployed within conservation actions assessed by integrating selected factors at different observation scales. PMID:28319183

Biotic and abiotic factors affect the nest environment of embryonic leatherback turtles, Dermochelys coriacea.

PubMed

Wallace, Bryan P; Sotherland, Paul R; Spotila, James R; Reina, Richard D; Franks, Bryan F; Paladino, Frank V

2004-01-01

Clutches of leatherback turtles, Dermochelys coriacea, have lower hatching success than those of other sea turtles, but causes of high embryonic mortality are unknown. We measured characteristics of clutches along with spatial and temporal changes in PO(2) and temperature during incubation to determine the extent to which they affected the developmental environment of leatherback embryos. Minimum PO(2) in nests decreased as both the total number and mass of metabolizing embryos increased. Increases in both the number and mass of metabolizing embryos caused an increase in maximum nest temperature. However, neither PO(2) nor temperature was correlated with hatching success. Our measurements of relatively high nest PO(2) (lowest 17.1 kPa or 16.9% O(2)) indicate that hypoxia apparently does not cause the low hatching success of leatherback clutches. Oxygen partial pressure increased and temperature decreased from the center toward the periphery of leatherback nests. We inferred from these measurements that positions of eggs within nests vary in quality and potentially affect overall developmental success of entire clutches. The large metabolic mass of leatherback clutches and limits to gas flux imposed by the sand create a situation in which leatherback embryos collectively affect their own environment.

Mercury patterns in wood duck eggs from a contaminated reservoir in South Carolina, USA.

PubMed

Kennamer, Robert A; Stout, Jason R; Jackson, Brian P; Colwell, Sheila V; Brisbin, I Lehr; Burger, Joanna

2005-07-01

Mercury contamination of wildlife populations has been documented widely in recent years as biomonitoring has become an important tool for assessing environmental contamination. Avian eggs provide an ideal assay material for Hg biomonitoring, particularly when the collection of eggs is simplified by using cavity-nesting species that nest in easily monitored nest boxes. However, studies are needed that address the dynamics of how Hg is distributed within eggs, and how Hg is deposited naturally within clutches laid by a single female and among clutches laid by different females occupying the same contaminated environment. We collected 138 eggs from 13 complete clutches of box-nesting wood ducks (Aix sponsa) during 1991 and 1992 at a contaminated reservoir of the U.S. Department of Energy's Savannah River Site in South Carolina, USA. Total Hg residues in egg components and clutches were determined, partitioning of Hg among egg components was examined, and effects of egg-laying sequence on egg component Hg levels were determined. Mean albumen Hg was 0.22 ppm wet mass, mean yolk Hg was 0.04 ppm, and mean shell Hg was 0.03 ppm. On average, 86.1% of total egg Hg was concentrated in the albumen, 11.2% in the yolk, and 2.7% in the shell. Mercury concentrations in all egg components varied significantly among clutches and between successive clutches laid by the same female in the same year. Laying sequence significantly affected Hg concentrations in the albumen and shell, but not in the yolk. Declines of albumen Hg due to laying sequence were more pronounced for clutches that contained higher average Hg levels. Our results suggest that collection of first-laid eggs may be preferable for assessing maximal Hg exposure to developing embryos, and that monitoring Hg levels through the use of empty eggshells following brood departure from nests may be valid only if the laying sequence is known.

Western Pond Turtle Head-starting and Reintroduction; 2002-2003 Progress Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Van Leuven, Susan; Allen, Harriet; Slavin, Kate

2004-02-01

This report covers the results of the western pond turtle head-starting and reintroduction project for the period of June 2002-September 2003. Wild hatchling western pond turtles from the Columbia River Gorge were reared at the Woodland Park and Oregon Zoos in 2002 and 2003 as part of the recovery effort for this Washington State endangered species. The objective of the program is to reduce losses to introduced predators like bullfrogs and largemouth bass by raising the hatchlings to a size where they are too large to be eaten by most of these predators. In 2002, 27 females from the twomore » Columbia Gorge populations were equipped with transmitters and monitored until they nested. Four more females carrying old transmitters were also monitored; only one of these transmitters lasted through the nesting season. In 2003, 30 females were monitored. Twenty-three of the females monitored in 2002 nested and produced 84 hatchlings. The hatchlings were collected in fall 2002 and reared in captivity at the Woodland Park and Oregon zoos in the head-start program. Twenty-seven of the turtles monitored in 2003 nested. Six of the turtles nested twice, producing a total of 33 nests. The nests will be checked in September and October 2003 for hatchlings. Of 121 head-started juvenile western pond turtles collected in the Columbia Gorge during the 2001 nesting season, 119 were released at three sites in the Columbia Gorge in 2002, and 2 held over for additional growth. Of 86 turtles reared in the head-start program at the Woodland Park and Oregon Zoos fall 2002 through summer 2003, 67 were released at sites in the Columbia Gorge in summer of 2003, and 15 held over for more growth. Fifty-nine juveniles were released at Pierce National Wildlife Refuge in July 2002, and 51 released there in July 2003. Sixteen of those released in 2002 and 16 released in 2003 were instrumented with radio transmitters and monitored for varying amounts of time for survival and habitat use between the time of release and August 2003, together with juveniles from the 2001 release which were monitored from June 2001 through August 2003, and juveniles from the 2000 release which were monitored from August 2000 through August 2003. The number of functioning transmitters varied due to transmitter failures and detachments, and availability of replacement transmitters, as well as opportunities to recapture turtles. By August 15, 2003, a total of 39 turtles were being monitored: 6 from the 2000 release, 8 from the 2001 release, 10 from the 2002 release, and 15 from the 2003 release. During the 2002 field season trapping effort, 280 turtles were captured in the Columbia Gorge, including 236 previously head-started turtles. During the 2003 trapping season, 349 turtles were captured in the Columbia Gorge; 304 of these had been head-started. These recaptures, together with confirmed nesting by head-start females and visual re-sightings, indicate the program is succeeding in boosting juvenile recruitment to increase the populations. Records were also collected on 160 individual painted turtles captured in 2002 and 189 painted turtles captured in 2003 during trapping efforts at Pierce NWR, to gather baseline information on this native population. Eight female painted turtles were monitored by telemetry during the 2002 nesting season; 4 nests were recorded for these animals, plus 35 nests located incidentally. Preferred habitat for nesting was identified based on the telemetry results, to be considered in anticipating future turtle habitat needs and in management planning at Pierce NWR. Bonneville Power Administration (BPA) funding supported activities in the Columbia River Gorge from June 2002 through September 2003.« less

Distribution of Hepatitis C virus (HCV) genotypes in seropositive patients in the state of Alagoas, Brazil

PubMed Central

Gonzaga, Rosa Maria S.; Rodart, Itatiana F.; Reis, Mitermayer Galvão; Ramalho Neto, Cícero Eduardo; Silva, Denise Wanderlei

2008-01-01

We determined the frequency of hepatitis C virus (HCV) genotypes in anti-HCV seropositive patients in the state of Alagoas, Brazil, by means of nested-reverse transcription-polymerase chain reaction (RT-nested-PCR) followed by restriction fragment length polymorphism (RFLP) of amplified fragments of the 5´NCR. The nested-PCR with genotype-specific primers from the core region was carried out when detection was not possible by the first approach. Detectable HCV-RNA was present in 115 (74.7%) of 154 serum samples. Genotype 1 was the most frequent (77.4%), against 20.9% of genotype 3 and 0.8% of genotype 2. Subtype 1b was predominant (65.2%), followed by subtypes 1a (8.7%), and 3a (6.1%). Coinfection (1a/3a) was detected in 0.8% of the samples. Indeed, there was no significant differences in the prevalence of genotype 1 compared to what has been obtained from anti-HCV seropositive patients from other locations in Brazil. Here we report for the first time the genotype 2 in the state of Alagoas. PMID:24031281

Nesting habits of Centris (Hemisiella) dichrootricha (Hymenoptera: Apidae) in the Northern Cerrado of Brazil.

PubMed

Carvalho, Gracy C A; Carreira, Léa M M; Rêgo, Márcia M C; Albuquerque, Patricia M C

2016-09-01

The Neotropical bee Centris (Hemisiella) dichrootricha is a solitary bee that nests in pre-existing cavities that occur in the rain forest. This study describes the nesting biology of C. dichrootricha and its preference for nesting in Cerrado and gallery forest habitats. The study was conducted from January 2012 and December 2013, in Mirador State Park in the municipality of Formosa da Serra Negra, Maranhão State, Brazil. For this, wooden trap-nests of 6, 8, 10, 12, 14 and 16 mm in diameter were used; a total of 300 trap-nests were placed in the gallery forest and Cerrado areas, respectively. Traps were monitored monthly and all completed nests were collected and replaced with empty ones. The nests were then taken to the laboratory to analyze bee development and emergence, nests characteristics and parasites presence. The species used 29 of the trap-nests, which had diameters of 8, 10, 12 and 14 mm. A total of 87 C. dichrootricha specimens emerged. The nests were parasitized by two bee species, Mesocheira bicolor (Apinae) and Coelioxys sp. (Megachilinae), and one fly species, Antrax sp. (Diptera). The highest nesting incidence of 72.4 % was observed in the gallery forest, whereas only 27.6 % in the Cerrado; this difference in habitat use was significant (χ² = 5.56; p < 0.05; DF = 1). For the nests that were built in the gallery forest, 80.9% of the soil originated from the Cerrado. The females were significantly larger than the males (F1, 76 = 595.19; p < 0.001). There were 11 pollen types that belonged to six families. Pollen of the family Malpighiaceae was most frequently used, with four species represented (Byrsonima crassifolia, B. rotunda, B. spicata and Heteropterys sp.). C. dichrootricha showed a preference for nesting in cavities of various diameters in gallery forest sites. The present study provides a novel description of the nesting habits and biology of C. dichrootricha in habitats of Central/Southern Maranhão. C. dichrootricha primarily used resources from the Cerrado, including soil to build their nests, pollen and floral oils; we concluded that gallery forest and Cerrado areas are intrinsically related to the maintenance of local populations of this species.

Influence of nesting shell size on brightness longevity and resistance to ultrasound-induced dissolution during enhanced B-mode contrast imaging.

PubMed

Wallace, N; Dicker, S; Lewin, P; Wrenn, S P

2014-12-01

This study aims to bridge the gap between transport mechanisms of an improved ultrasound contrast agent (UCA) and its resulting behavior in a clinical imaging study. Phospholipid-shelled microbubbles nested within the aqueous core of a polymer microcapsule are examined for their use and feasibility as an improved UCA. The nested formulation provides contrast comparable to traditional formulations, specifically an SF6 microbubble coated by a DSPC PEG-3000 monolayer, with the advantage that contrast persists at least nine times longer in a mock clinical, in vitro setting. The effectiveness of the sample was measured using a contrast ratio in units of decibels (dB) which compares the brightness of the nested microbubbles to a reference value of a phantom tissue mimic. During a 40min imaging study, six nesting formulations with average outer capsule diameters of 1.95, 2.53, 5.55, 9.95, 14.95, and 20.51μm reached final contrast ratio values of 0.25, 2.35, 3.68, 4.51, 5.93, and 8.00dB, respectively. The starting contrast ratio in each case was approximately 8dB and accounts for the brightness attributed to the nesting shell. As compared with empty microcapsules (no microbubbles nested within), enhancement of the initial contrast ratio increased systematically with decreasing microcapsule size. The time required to reach a steady state in the temporal contrast ratio profile also varied with microcapsule diameter and was found to be 420s for each of the four smallest shell diameters and 210s and 150s, respectively, for the largest two shell diameters. All nested formulations were longer-lived and gave higher final contrast ratios than a control sample comprising un-nested, but otherwise equivalent, microbubbles. Specifically, the contrast ratio of the un-nested microbubbles decreased to a negative value after 4min of continuous ultrasound exposure with complete disappearance of the microbubbles after 15min whereas all nested formulations maintained positive contrast ratio values for the duration of the 40min trial. The results are consistent with two distinct stages of gas transport: in the first stage, passive diffusion occurs under ambient conditions across the microbubble monolayer within the first few minutes after formulation until the aqueous interior of the microcapsule is saturated with gas; in the second stage ultrasound drives additional gas dissolution even further due to pressure modulation. It is important to understand the chemistry and transport mechanisms of this contrast agent under the influence of ultrasound to attain better perspicacity for enhanced applications in imaging. Results from this study will facilitate future preclinical studies and clinical applications of nested microbubbles for therapeutic and diagnostic imaging. Copyright © 2014 Elsevier B.V. All rights reserved.

Collective Student Trust: A Social Resource for Urban Elementary Students

ERIC Educational Resources Information Center

Adams, Curt M.

2014-01-01

Purpose: The purpose of this study was to determine if collective student trust functions as a resource for urban elementary students. Methods: Data from 1,646 students nested in 56 elementary schools in an urban school district were used to test the hypothesized effect of collective student trust on school identification, self-regulated…

Identification and properties of steroid-binding proteins in nesting Chelonia mydas plasma.

PubMed

Ikonomopoulou, M P; Bradley, A J; Whittier, J M; Ibrahim, K

2006-11-01

We report for the first time the presence of a sex steroid-binding protein in the plasma of green sea turtles Chelonia mydas, which provides an insight into reproductive status. A high affinity, low capacity sex hormone steroid-binding protein was identified in nesting C. mydas and its thermal profile was established. In nesting C. mydas testosterone and oestradiol bind at 4 degrees C with high affinity (K (a) = 1.49 +/- 0.09 x 10(9) M(-1); 0.17 +/- 0.02 x 10(7) M(-1)) and low binding capacity (B (max) = 3.24 +/- 0.84 x 10(-5) M; 0.33 +/- 0.06 x 10(-4) M). The binding affinity and capacity of testosterone at 23 and 36 degrees C, respectively were similar to those determined at 4 degrees C. However, oestradiol showed no binding activity at 36 degrees C. With competition studies we showed that oestradiol and oestrone do not compete for binding sites. Furthermore, in nesting C. mydas plasma no high-affinity binding was observed for adrenocortical steroids (cortisol and corticosterone) and progesterone. Our results indicate that in nesting C. mydas plasma temperature has a minimal effect on the high-affinity binding of testosterone to sex steroid-binding protein, however, the high affinity binding of oestradiol to sex steroid-binding protein is abolished at a hypothetically high (36 degrees C) sea/ambient/body temperature. This suggests that at high core body temperatures most of the oestradiol becomes biologically available to the tissues rather than remaining bound to a high-affinity carrier.

Use of protected activity centers by Mexican Spotted Owls in the Sacramento Mountains, New Mexico

Treesearch

Joseph L. Ganey; James P. Ward; Jeffrey S. Jenness; William M. Block; Shaula Hedwall; Ryan S. Jonnes; Darrell L. Apprill; Todd A. Rawlinson; Sean C. Kyle; Steven L. Spangle

2014-01-01

A Recovery Plan developed for the threatened Mexican Spotted Owl (Strix occidentalis lucida) recommended designating Protected Activity Centers (PACs) with a minimum size of 243 ha to conserve core use areas of territorial owls. The plan assumed that areas of this size would protect " the nest site, several roost sites, and the most proximal and highly-used...

Application of Group-Level Item Response Models in the Evaluation of Consumer Reports about Health Plan Quality

ERIC Educational Resources Information Center

Reise, Steven P.; Meijer, Rob R.; Ainsworth, Andrew T.; Morales, Leo S.; Hays, Ron D.

2006-01-01

Group-level parametric and non-parametric item response theory models were applied to the Consumer Assessment of Healthcare Providers and Systems (CAHPS[R]) 2.0 core items in a sample of 35,572 Medicaid recipients nested within 131 health plans. Results indicated that CAHPS responses are dominated by within health plan variation, and only weakly…

Querying Proofs

NASA Technical Reports Server (NTRS)

Aspinall, David; Denney, Ewen; Lueth, Christoph

2012-01-01

We motivate and introduce a query language PrQL designed for inspecting machine representations of proofs. PrQL natively supports hiproofs which express proof structure using hierarchical nested labelled trees. The core language presented in this paper is locally structured (first-order), with queries built using recursion and patterns over proof structure and rule names. We define the syntax and semantics of locally structured queries, demonstrate their power, and sketch some implementation experiments.

Description of core samples returned by Apollo 12

NASA Technical Reports Server (NTRS)

Lindsay, J. F.; Fryxell, R.

1971-01-01

Three core samples were collected by the Apollo 12 astronauts. Two are single cores, one of which (sample 12026) was collected close to the lunar module during the first extravehicular activity period and is 19.3 centimeters long. The second core (sample 12027) was collected at Sharp Crater during the second extravehicular activity period and is 17.4 centimeters long. The third sample is a double core (samples 12025 and 12028), which was collected near Halo Crater during the second extravehicular activity period. Unlike the other cores, the double-drive-tube core sample has complex layering with at least 10 clearly defined stratigraphic units. This core sample is approximately 41 centimeters long.

In situ detection of the Clostridium botulinum type C1 toxin gene in wetland sediments with a nested PCR assay

USGS Publications Warehouse

Williamson, Judy L.; Rocke, Tonie E.; Aiken, Judd M.

1999-01-01

A nested PCR was developed for detection of the Clostridium botulinum type C1 toxin gene in sediments collected from wetlands where avian botulism outbreaks had or had not occurred. The C1 toxin gene was detected in 16 of 18 sites, demonstrating both the ubiquitous distribution of C. botulinum type C in wetland sediments and the sensitivity of the detection assay.

Edge, height and visibility effects on nest predation by birds and mammals in the Brazilian cerrado

NASA Astrophysics Data System (ADS)

Dodonov, Pavel; Paneczko, Ingrid Toledo; Telles, Marina

2017-08-01

Edge influence is one of the main impacts in fragmented landscapes; yet, most of studies on edge influence have focused on high-contrast edges, and the impacts of low-contrast edges and narrow linear openings are less understood. Edge influence often affects bird nest predation, but these effects are not ubiquitous and may depend on characteristics such as nest height and visibility. We performed an experiment on nest predation in a migratory passerine, Elaenia chiriquensis (Lesser Elaenia; Passeriformes: Tyrannidae), in a savanna vegetation of the Brazilian Cerrado biome in South-Eastern Brazil. We used 89 real E. chiriquensis nests, collected during previous reproductive seasons, with two plasticine eggs in each, and randomly distributed them at two locations (edge - up to 20 m from a firebreak edge and interior - approx. 150-350 m from the edge) and two heights (low - 60-175 cm and high - 190-315 cm above ground). We also measured leaf and branch density around each nest. We performed this study on two 15-days campaigns, checking the nests every 2-3 days and removing those with predation marks. We sorted the predation marks into those made by birds, mammals, or unidentified predators, and used generalized linear models to assess the effects of location, height and leaf density on survival time and predator type. Only four nests had not been predated during the experiment; 55 nests were predated by birds, 7 by mammals, and 23 by unidentified predators. Low nests in the interior tended to have larger survival times whereas high nests at the edge tended to be more predated by birds and less predated by mammals. Thus, even a low-contrast (firebreak) edge may significantly increase nest predation, which is also affected by the nest's height, mainly due to predation by birds. These effects may be due to predator movement along the edge as well as to edge-related changes in vegetation structure. We suggest that higher-contrast edges which may also be used as movement conduits, for example powerline openings, may have even stronger effects, demanding further studies.

No phenotypic plasticity in nest-site selection in response to extreme flooding events.

PubMed

Bailey, Liam D; Ens, Bruno J; Both, Christiaan; Heg, Dik; Oosterbeek, Kees; van de Pol, Martijn

2017-06-19

Phenotypic plasticity is a crucial mechanism for responding to changes in climatic means, yet we know little about its role in responding to extreme climatic events (ECEs). ECEs may lack the reliable cues necessary for phenotypic plasticity to evolve; however, this has not been empirically tested. We investigated whether behavioural plasticity in nest-site selection allows a long-lived shorebird ( Haematopus ostralegus ) to respond to flooding. We collected longitudinal nest elevation data on individuals over two decades, during which time flooding events have become increasingly frequent. We found no evidence that individuals learn from flooding experiences, showing nest elevation change consistent with random nest-site selection. There was also no evidence of phenotypic plasticity in response to potential environmental cues (lunar nodal cycle and water height). A small number of individuals, those nesting near an artificial sea wall, did show an increase in nest elevation over time; however, there is no conclusive evidence this occurred in response to ECEs. Our study population showed no behavioural plasticity in response to changing ECE patterns. More research is needed to determine whether this pattern is consistent across species and types of ECEs. If so, ECEs may pose a major challenge to the resilience of wild populations.This article is part of the themed issue 'Behavioural, ecological and evolutionary responses to extreme climatic events'. © 2017 The Author(s).

Provisioning rates and time budgets of adult and nestling Bald Eagles at Inland Wisconsin nests

USGS Publications Warehouse

Keith, Warnke D.; Andersen, D.E.; Dykstra, C.R.; Meyer, M.W.; Karasov, W.H.

2002-01-01

We used a remote video recording system and direct observation to quantify provisioning rate and adult and nestling behavior at Bald Eagle (Haliaeetus leucocephalus) nests in north-central Wisconsin in 1992 (N = 5) and 1993 (N = 8). Eagles nesting in this region have a high reproductive rate (??? 1.3 young/occupied territory), and the number of occupied territories has expanded nearly three-fold since 1980. The season-long provisioning rate averaged 5.2 prey deliveries/nest/d and 3.0 prey deliveries/nestling/d, and did not vary by year or with nestling number or age. Fish (Osteichthyes) made up 97% of identified prey deliveries followed by reptiles (Reptilia) (1.5%), birds (Aves) (1.2%), and mammals (Mammalia) (0.6%). Nearly 85% of prey items were >15 cm and 90% of the day and was negatively correlated with nestling age. Time adults spent feeding nestlings was negatively correlated with nestling age. Nestlings stood or sat in the nest >30% of the day, began to feed themselves, and exhibited increased mobility in the nest at 6-8 wk. We identified three stages of the nestling period and several benchmarks that may be useful when scheduling data collection for comparison of Bald Eagle nesting behavior. Our results support the hypothesis that food was not limiting this breeding population of Bald Eagles. ?? 2002 The Raptor Research Foundation, Inc.

Distribution of ground-nesting marine birds along shorelines in Glacier Bay, southeastern Alaska: An assessment related to potential disturbance by back-country users

USGS Publications Warehouse

Arimitsu, Mayumi L.; Piatt, John F.; Romano, Marc D.

2007-01-01

With the exception of a few large colonies, the distribution of ground-nesting marine birds in Glacier Bay National Park in southeastern Alaska is largely unknown. As visitor use increases in back-country areas of the park, there is growing concern over the potential impact of human activities on breeding birds. During the 2003–05 breeding seasons, the shoreline of Glacier Bay was surveyed to locate ground-nesting marine birds and their nesting areas, including wildlife closures and historical sites for egg collection by Alaska Native peoples. The nesting distribution of four common ground-nesting marine bird species was determined: Arctic Tern (Sterna paradisaea), Black Oystercatcher (Haematopus bachmani), Mew Gull (Larus canus), and Glaucous-winged Gull (Larus glaucescens). Observations of less abundant species also were recorded, including Herring Gull (Larus argentatus), Red-throated Loon (Gavia stellata), Canada Goose (Branta canadensis), Willow Ptarmigan (Lagopus lagopus), Semipalmated Plover (Charadrius semipalmatus), Spotted Sandpiper (Actitis macularia), Least Sandpiper (Calidris minutilla), Parasitic Jaeger (Stercorarius parasiticus), and Aleutian Tern (Sterna aleutica). Nesting distribution for Arctic Terns was largely restricted to the upper arms of the bay and a few treeless islets in the lower bay, whereas Black Oystercatchers were more widely distributed along shorelines in the park. Mew Gulls nested throughout the upper bay in Geikie Inlet and in Fingers and Berg Bays, and most Glaucous-winged Gull nests were found at wildlife closures in the central and lower bays. Several areas were identified where human disturbance could affect breeding birds. This study comprises the first bay-wide survey for the breeding distribution of ground-nesting marine birds in Glacier Bay National Park, providing a minimum estimate of their numbers and distribution within the park. This information can be used to assess future human disturbance and track natural changes in nesting bird distribution over time.

Detection of Mycoplasma hyopneumoniae by Air Sampling with a Nested PCR Assay

PubMed Central

Stärk, Katharina D. C.; Nicolet, Jacques; Frey, Joachim

1998-01-01

This article describes the first successful detection of airborne Mycoplasma hyopneumoniae under experimental and field conditions with a new nested PCR assay. Air was sampled with polyethersulfone membranes (pore size, 0.2 μm) mounted in filter holders. Filters were processed by dissolution and direct extraction of DNA for PCR analysis. For the PCR, two nested pairs of oligonucleotide primers were designed by using an M. hyopneumoniae-specific DNA sequence of a repeated gene segment. A nested PCR assay was developed and used to analyze samples collected in eight pig houses where respiratory problems had been common. Air was also sampled from a mycoplasma-free herd. The nested PCR was highly specific and 104 times as sensitive as a one-step PCR. Under field conditions, the sampling system was able to detect airborne M. hyopneumoniae on 80% of farms where acute respiratory disease was present. No airborne M. hyopneumoniae was detected on infected farms without acute cases. The chance of successful detection was increased if air was sampled at several locations within a room and at a lower air humidity. PMID:9464391

Molecular diagnosis of strongyloidiasis in a population of an endemic area through nested-PCR.

PubMed

Sharifdini, Meysam; Keyhani, Amir; Eshraghian, Mohammad Reza; Beigom Kia, Eshrat

2018-01-01

This study is aimed to diagnose and analyze strongyloidiasis in a population of an endemic area of Iran using nested-PCR, coupled with parasitological methods. Screening of strongyloidiasis infected people using reliable diagnostic techniques are essential to decrease the mortality and morbidity associated with this infection. Molecular methods have been proved to be highly sensitive and specific for detection of Strongyloides stercoralis in stool samples. A total of 155 fresh single stool samples were randomly collected from residents of north and northwest of Khouzestan Province, Iran. All samples were examined by parasitological methods including formalin-ether concentration and nutrient agar plate culture, and molecular method of nested-PCR. Infections with S. stercoralis were analyzed according to demographic criteria. Based on the results of nested-PCR method 15 cases (9.7%) were strongyloidiasis positive. Nested-PCR was more sensitive than parasitological techniques on single stool sampling. Elderly was the most important population index for higher infectivity with S. stercoralis . In endemic areas of S. stercoralis , old age should be considered as one of the most important risk factors of infection, especially among the immunosuppressed individuals.

Compilation of 1990 annual reports of the Navy ELF communications system ecological monitoring program. Volume 2: Tabs C thru F

NASA Astrophysics Data System (ADS)

Zapotosky, J. E.

1991-08-01

This portion of the report includes monitoring of and data for arthropoda and earthworms; pollinating insects; and small mammals and nesting birds. During the 1990 growing season the ELF antenna was operated more frequently than in prior years. This provides 2 years of intermittent ELF exposure for the biological systems to react to the radiation, one year of very limited exposure and greater exposure in 1990. Arthropod and earthworm sampling was conducted at intervals of two weeks from early May to late October. High voltage transmission lines and magnetic fields have been shown to affect honeybee reproduction, survival, orientation, and nest structure. ELF EM fields could have similar effects on native megachild bees. Changes in cell length, number of cells per nest, number of leaver per cell, orientation of nest entrances, and time to collect a round leaf pierce to cap a cell were monitored. We have not detected significant changes that could be attributed to ELF EM fields. Small mammal and nesting bird biological studies in the western Upper Peninsula of Michigan for the year 1990 are reported.

A saltwater flotation technique to identify unincubated eggs

USGS Publications Warehouse

Devney, C.A.; Kondrad, S.L.; Stebbins, K.R.; Brittingham, K.D.; Hoffman, D.J.; Heinz, G.H.

2009-01-01

Field studies on nesting birds sometimes involve questions related to nest initiation dates, length of the incubation period, or changes in parental incubation behavior during various stages of incubation. Some of this information can be best assessed when a nest is discovered before the eggs have undergone any incubation, and this has traditionally been assessed by floating eggs in freshwater. However, because the freshwater method is not particularly accurate in identifying unincubated eggs, we developed a more reliable saltwater flotation method. The saltwater method involves diluting a saturated saltwater solution with freshwater until a salt concentration is reached where unincubated eggs sink to the bottom and incubated eggs float to the surface. For Laughing Gulls (Leucophaeus atricilla), floating eggs in freshwater failed to identify 39.0% (N = 251) of eggs that were subsequently found by candling to have undergone incubation prior to collection. By contrast, in a separate collection of gull eggs, no eggs that passed the saltwater test (N = 225) were found by a later candling to have been incubated prior to collection. For Double-crested Cormorants (Phalacrocorax auritus), floating eggs in freshwater failed to identify 15.6% (N = 250) of eggs that had undergone incubation prior to collection, whereas in a separate collection, none of the eggs that passed the saltwater test (N = 85) were found by a later candling to have been incubated prior to collection. Immersion of eggs in saltwater did not affect embryo survival. Although use of the saltwater method is likely limited to colonial species and requires calibrating a saltwater solution, it is a faster and more accurate method of identifying unincubated eggs than the traditional method of floating eggs in freshwater.

Collective defence portfolios of ant hosts shift with social parasite pressure.

PubMed

Jongepier, Evelien; Kleeberg, Isabelle; Job, Sylwester; Foitzik, Susanne

2014-09-22

Host defences become increasingly costly as parasites breach successive lines of defence. Because selection favours hosts that successfully resist parasitism at the lowest possible cost, escalating coevolutionary arms races are likely to drive host defence portfolios towards ever more expensive strategies. We investigated the interplay between host defence portfolios and social parasite pressure by comparing 17 populations of two Temnothorax ant species. When successful, collective aggression not only prevents parasitation but also spares host colonies the cost of searching for and moving to a new nest site. However, once parasites breach the host's nest defence, host colonies should resort to flight as the more beneficial resistance strategy. We show that under low parasite pressure, host colonies more likely responded to an intruding Protomognathus americanus slavemaker with collective aggression, which prevented the slavemaker from escaping and potentially recruiting nest-mates. However, as parasite pressure increased, ant colonies of both host species became more likely to flee rather than to fight. We conclude that host defence portfolios shift consistently with social parasite pressure, which is in accordance with the degeneration of frontline defences and the evolution of subsequent anti-parasite strategies often invoked in hosts of brood parasites. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

Evaluation of social attraction measures to establish Forster’s tern (Sterna forsteri) nesting colonies for the South Bay Salt Pond Restoration Project, San Francisco Bay, California—2017 Annual Report

USGS Publications Warehouse

Hartman, C. Alex; Ackerman, Joshua T.; Herzog, Mark P.; Wang, Yiwei; Strong, Cheryl

2018-05-31

Forster’s terns (Sterna forsteri), historically one of the most numerous colonial-breeding waterbirds in South San Francisco Bay, California, have had recent decreases in the number of nesting colonies and overall breeding population size. The South Bay Salt Pond (SBSP) Restoration Project aims to restore 50–90 percent of former salt evaporation ponds to tidal marsh habitat in South San Francisco Bay. This restoration will remove much of the historical island nesting habitat used by Forster’s terns, American avocets (Recurvirostra americana), and other waterbirds. To address this issue, the SBSP Restoration Project organized the construction of new nesting islands in managed ponds that will not be restored to tidal marsh, thereby providing enduring island nesting habitat for waterbirds. In 2012, 16 new islands were constructed in Pond A16 in the Alviso complex of the Don Edwards San Francisco Bay National Wildlife Refuge, increasing the number of islands in this pond from 4 to 20. However, despite a history of nesting on the four historical islands in Pond A16 before 2012, no Forster’s terns have nested in Pond A16 since the new islands were constructed.In 2017, we used social attraction measures (decoys and electronic call systems) to attract Forster’s terns to islands within Pond A16 to re-establish nesting colonies. We maintained these systems from March through August 2017. To evaluate the effect of these social attraction measures, we also completed waterbird surveys between April and August, where we recorded the number and location of all Forster’s terns and other waterbirds using Pond A16, and monitored waterbird nests. We compared bird survey and nest monitoring data collected in 2017 to data collected in 2015 and 2016, prior to the implementation of social attraction measures, allowing for direct evaluation of social attraction efforts on Forster’s terns.To increase the visibility and stakeholder involvement of this project, we engaged in multiple outreach activities, including the development of a project web site (https://apps.usgs.gov/shorebirds/) and educational video (https://www.youtube.com/watch?v=-IaZD0YlAvM&feature=youtu.be); publication of a popular article (http://www.sfestuary.org/estuary-news-caspian-push-and-pull/); and public presentations to relay findings to managers, stakeholders, and the general public.The relative number of Forster’s terns using Pond A16, after adjusting for the overall South San Francisco Bay breeding population each year, was higher during the nesting period in 2017 (after social attraction was used) than in 2015 and 2016 (before social attraction was used). Furthermore, in 2017, more Forster’s terns were observed in the areas of Pond A16 where decoys and call systems were deployed during the pre-nesting and nesting periods. Although no Forster’s tern nests were recorded in Pond A16 before (2015, 2016) or after (2017) implementation of social attraction measures, bird survey results indicate that Forster’s terns were attracted to areas within Pond A16 where decoys and call systems were deployed, suggesting that terns may have been prospecting for future breeding sites. As social attraction efforts often benefit from multiple years of decoy and call system deployment, these first-year results suggest that continued implementation of social attraction measures could help to re-establish Forster’s tern breeding colonies in Pond A16 and other areas of South San Francisco Bay.

Eggshell bacterial load is related to antimicrobial properties of feathers lining barn swallow nests.

PubMed

Peralta-Sánchez, Juan Manuel; Soler, Juan José; Martín-Platero, Antonio Manuel; Knight, Rob; Martínez-Bueno, Manuel; Møller, Anders Pape

2014-02-01

The use of feathers to line bird's nests has traditionally been interpreted as having a thermoregulatory function. Feather-degrading bacteria growing on feathers lining nests may have antimicrobial properties, which may provide an additional benefit to lining nests with feathers. We test the hypothesis that the production of antimicrobial substances by feather bacteria affects the microbiological environment of the nest, and therefore the bacterial density on eggshells and, indirectly, hatching success. These effects would be expected to differ between nests lined with pigmented and white feathers, because bacteria grow differently on feathers of different colors. We experimentally manipulated the composition of pigmented and unpigmented feathers in nests of the barn swallow (Hirundo rustica) and studied the antimicrobial properties against the keratin-degrading bacterium Bacillus licheniformis of bacteria isolated from feathers of each color. Analyzed feathers were collected at the end of the incubation period, and antimicrobial activity was defined as the proportion of bacteria from the feathers that produce antibacterial substances effective against B. licheniformis. Our experimental manipulation affected antimicrobial activity, which was higher in nests with only white feathers at the beginning of incubation. Moreover, white feathers showed higher antimicrobial activity than black ones. Interestingly, antimicrobial activity in feathers of one of the colors correlated negatively with bacterial density on feather of the opposite color. Finally, antimicrobial activity of white feathers was negatively related to eggshell bacterial load. These results suggest that antimicrobial properties of feathers in general and of white feathers in particular affect the bacterial environment in nests. This environment in turn affects the bacterial load on eggshells, which may affect hatching success.

Occurrence and nest survival of four thrush species on a managed central Appalachian forest

USGS Publications Warehouse

Dellinger, R.L.; Wood, P.B.; Keyser, P.D.

2007-01-01

The wood thrush (Hylocichla mustelina Gmelin) is a species of concern in the central Appalachians, and is sympatric there with three related species, the American robin (Turdus migratorius Linnaeus), hermit thrush (Catharus guttatus Pallas), and veery (Catharus fuscescens Stephens). Our objectives were to quantify use of mature forests and areas subjected to even-aged harvesting and partial harvesting by these four species by measuring their frequency of occurrence, nest survival, and nest site characteristics. We also compared microhabitat characteristics among the landcover types. During 2001-2003 we conducted point count surveys, monitored nests, and collected nest habitat data on a managed forest in West Virginia. Land cover was digitized into five categories: deciduous and mixed mature forest, deciduous and mixed partial harvest, and even-aged regeneration harvest. Chi-square goodness-of-fit analysis with Bonferroni 95% confidence intervals indicated that deciduous partial harvests were more likely to be inhabited by wood thrushes. The other three species were less likely to occur in deciduous partial harvests, and veery had lower nest survival in partial harvests than in mature forest. Contrary to many published descriptions that suggest thrushes will not nest in even-aged harvests, a small number of all species but hermit thrushes did nest in this cover type, often near a residual canopy tree. Hermit thrushes were less likely to inhabit mature deciduous forest, even-aged harvests, and harvested edges but chose nesting areas in mature mixed forest that was disturbed by road building and the seeding of landings and skid trails >10 years ago. Microhabitat characteristics of landcovers did not differ overall. Our results suggest a relationship with partial harvesting that is positive for wood thrush but negative for the other three species. ?? 2007 Elsevier B.V. All rights reserved.

Baseline plasma corticosterone, haematological and biochemical results in nesting and rehabilitating loggerhead sea turtles (Caretta caretta)

PubMed Central

Flower, Jennifer E.; Norton, Terry M.; Andrews, Kimberly M.; Nelson, Steven E.; Parker, Clare E.; Romero, L. Michael; Mitchell, Mark A.

2015-01-01

The evaluation of hormonal responses to stress in reptiles relies on acquisition of baseline corticosterone concentrations; however, the stress associated with the restraint needed to collect the blood samples can affect the results. The purpose of this study was to determine a time limit for the collection of blood samples to evaluate baseline corticosterone, haematological and biochemical results in nesting (n = 11) and rehabilitating (n = 16) loggerhead sea turtles (Caretta caretta). Blood samples were collected from the dorsal cervical sinus of each turtle immediately after touching the animal (t0; 0–3 min) and 3 (t3; 3–6 min), 6 (t6; 6–9 min; nesting turtles only), 10 (t10; 10–13 min) and 30 min (t30; rehabilitating turtles only) after the initial hands-on time. Consistent between the rehabilitating and nesting turtles, there was a subtle yet significant increase in white blood cell counts over time. Despite the fact that white blood cell counts increased during the sampling period, there was no direct correlation between white blood cell count and corticosterone in the sampled turtles. In the nesting turtles, significant elevations in corticosterone were noted between t0 and t3 (P = 0.014) and between t0 and t6 (P = 0.022). Values at t10 were not significantly different from those at t0 (P = 0.102); however, there was a trend for the corticosterone values to continue to increase. These results suggest that sampling of nesting loggerhead sea turtles within 3 min of handling will provide baseline corticosterone concentrations in their natural environment. Significant elevations in corticosterone were also noted in the rehabilitating loggerhead sea turtles between t0 and t10 (P = 0.02) and between t0 and t30 of sampling (P = 0.0001). These results suggest that sampling of loggerhead sea turtles within 6 min of handling should provide baseline corticosterone concentrations in a rehabilitation setting. The delay in the corticosterone response noted in the rehabilitating turtles may be associated with the daily contact (visual or direct) they have with their human caretakers. PMID:27293688

Improving decision speed, accuracy and group cohesion through early information gathering in house-hunting ants.

PubMed

Stroeymeyt, Nathalie; Giurfa, Martin; Franks, Nigel R

2010-09-29

Successful collective decision-making depends on groups of animals being able to make accurate choices while maintaining group cohesion. However, increasing accuracy and/or cohesion usually decreases decision speed and vice-versa. Such trade-offs are widespread in animal decision-making and result in various decision-making strategies that emphasize either speed or accuracy, depending on the context. Speed-accuracy trade-offs have been the object of many theoretical investigations, but these studies did not consider the possible effects of previous experience and/or knowledge of individuals on such trade-offs. In this study, we investigated how previous knowledge of their environment may affect emigration speed, nest choice and colony cohesion in emigrations of the house-hunting ant Temnothorax albipennis, a collective decision-making process subject to a classical speed-accuracy trade-off. Colonies allowed to explore a high quality nest site for one week before they were forced to emigrate found that nest and accepted it faster than emigrating naïve colonies. This resulted in increased speed in single choice emigrations and higher colony cohesion in binary choice emigrations. Additionally, colonies allowed to explore both high and low quality nest sites for one week prior to emigration remained more cohesive, made more accurate decisions and emigrated faster than emigrating naïve colonies. These results show that colonies gather and store information about available nest sites while their nest is still intact, and later retrieve and use this information when they need to emigrate. This improves colony performance. Early gathering of information for later use is therefore an effective strategy allowing T. albipennis colonies to improve simultaneously all aspects of the decision-making process--i.e. speed, accuracy and cohesion--and partly circumvent the speed-accuracy trade-off classically observed during emigrations. These findings should be taken into account in future studies on speed-accuracy trade-offs.

50 CFR 21.23 - Scientific collecting permits.

Code of Federal Regulations, 2010 CFR

2010-10-01

... take, transport, or possess migratory birds, their parts, nests, or eggs for scientific research or... 50 Wildlife and Fisheries 6 2010-10-01 2010-10-01 false Scientific collecting permits. 21.23... WILDLIFE AND PLANTS (CONTINUED) MIGRATORY BIRD PERMITS Specific Permit Provisions § 21.23 Scientific...

50 CFR 21.23 - Scientific collecting permits.

Code of Federal Regulations, 2011 CFR

2011-10-01

... take, transport, or possess migratory birds, their parts, nests, or eggs for scientific research or... 50 Wildlife and Fisheries 8 2011-10-01 2011-10-01 false Scientific collecting permits. 21.23... WILDLIFE AND PLANTS (CONTINUED) MIGRATORY BIRD PERMITS Specific Permit Provisions § 21.23 Scientific...

Molecular Evidence of Different Rickettsia Species in Villeta, Colombia.

PubMed

Faccini-Martínez, Álvaro A; Ramírez-Hernández, Alejandro; Forero-Becerra, Elkin; Cortés-Vecino, Jesús A; Escandón, Patricia; Rodas, Juan D; Palomar, Ana M; Portillo, Aránzazu; Oteo, José A; Hidalgo, Marylin

2016-02-01

The aim of this work was to detect and identify Rickettsia species in ticks collected in rural areas of Villeta, Colombia. Tick specimens were collected from domestic animals and walls of houses in five rural villages of Villeta town and from humans in Naranjal village (same town). Moreover, a flea collected from the same area was also processed. DNA was extracted and tested by conventional, semi-nested, and nested PCR reactions targeting rickettsial genes. In the ticks collected from humans from Naranjal village, a nymph of Amblyomma cajennense sensu lato was amplified using primers for ompA and sequenced (100% identity with "Candidatus Rickettsia amblyommii"). Last, three amplicons from the Ctenocephalides felis flea, corresponding to gltA, ompB, and 16S rRNA genes, showed high identity with R. felis (98.5%, 97.3%, and 99.2%, respectively) and "Candidatus Rickettsia asemboensis" (99.7% and 100%, respectively). To our knowledge, these results correspond to the first molecular detection in Colombia of "Candidatus Rickettsia amblyommii" and "Ca. Rickettsia asemboensis" in fleas.

Seasonal patterns of prey availability and the foraging behavior of arctic foxes (Alopex lagopus) in a waterfowl nesting area

USGS Publications Warehouse

Stickney, Alice

1991-01-01

The foraging behavior of arctic foxes was observed in a waterfowl nesting area on the Yukon–Kuskokwim Delta of Alaska in 1985–1986. Observations were made during peak fox activity from two towers, 3 m high, located in different community types. Data were collected continuously for individual foxes on specific activities, the community in which activities occurred, and the type of food obtained. After migratory birds started nesting in the area, the food potentially available to foxes changed from microtines, old caches, and carrion to include eggs and birds. This change was reflected in the foraging behavior of the foxes as they switched to predation on eggs. After nesting began, the search success rate of foxes increased (from <30% to >50%) and search duration decreased (mean 19.7 s before nest initiation versus mean 9.4 s in mid-incubation) as the rate of food acquisition increased. Over 80% of the eggs taken by foxes were cached rather than eaten immediately, which extended the availability of this temporally limited resource to foxes. Eggs were the primary prey of arctic foxes during the nesting stages in both years, even though microtine populations were high in one year (1985) and low in the other (1986).

Oldest known dinosaurian nesting site and reproductive biology of the Early Jurassic sauropodomorph Massospondylus

PubMed Central

Reisz, Robert R.; Evans, David C.; Roberts, Eric M.; Sues, Hans-Dieter; Yates, Adam M.

2012-01-01

The extensive Early Jurassic continental strata of southern Africa have yielded an exceptional record of dinosaurs that includes scores of partial to complete skeletons of the sauropodomorph Massospondylus, ranging from embryos to large adults. In 1976 an incomplete egg clutch including in ovo embryos of this dinosaur, the oldest known example in the fossil record, was collected from a road-cut talus, but its exact provenance was uncertain. An excavation program at the site started in 2006 has yielded multiple in situ egg clutches, documenting the oldest known dinosaurian nesting site, predating other similar sites by more than 100 million years. The presence of numerous clutches of eggs, some of which contain embryonic remains, in at least four distinct horizons within a small area, provides the earliest known evidence of complex reproductive behavior including site fidelity and colonial nesting in a terrestrial vertebrate. Thus, fossil and sedimentological evidence from this nesting site provides empirical data on reproductive strategies in early dinosaurs. A temporally calibrated optimization of dinosaurian reproductive biology not only demonstrates the primary significance of the Massospondylus nesting site, but also provides additional insights into the initial stages of the evolutionary history of dinosaurs, including evidence that deposition of eggs in a tightly organized single layer in a nest evolved independently from brooding. PMID:22308330

Foraging ecology of least terns and piping plovers nesting on Central Platte River sandpits and sandbars

USGS Publications Warehouse

Sherfy, Mark H.; Anteau, Michael J.; Shaffer, Terry L.; Sovada, Marsha A.; Stucker, Jennifer H.

2012-01-01

Federally listed least terns (Sternula antillarum) and piping plovers (Charadrius melodus) nest on riverine sandbars on many major midcontinent river systems. On the Central Platte River, availability of sandbar habitat is limited, and both species nest on excavated sandpits in the river's floodplain. However, the extent to which sandpit-nesting birds use riverine habitats for foraging is unknown. We evaluated use of foraging habitats by least terns and piping plovers by collecting data on movements, behavior, foraging habitat, and productivity. We radiomarked 16 piping plovers and 23 least terns in 2009-2010 and monitored their movements using a network of fixed telemetry dataloggers. Piping plovers were detected primarily by the datalogger located in their nesting sandpit, whereas least terns were more frequently detected on dataloggers outside of the nesting sandpit. Telemetry data and behavioral observations showed that least terns tended to concentrate at the Kearney Canal Diversion Gates, where forage fish were apparently readily available. Fish sampling data suggested that forage fish were more abundant in riverine than in sandpit habitats, and behavioral observations showed that least terns foraged more frequently in riverine than in sandpit habitats. Piping plovers tended to forage in wet substrates along sandpit shorelines, but also used dry substrates and sandpit interior habitats. The greater mobility of least terns makes a wider range of potential foraging habitats available during brood rearing, making them able to exploit concentrations of fish outside the nesting colony. Thus, our data suggest that different spatial scales should be considered in managing nesting and foraging habitat complexes for piping plovers and least terns.

Evaluation of osprey habitat suitability and interaction with contaminant exposure

USGS Publications Warehouse

Toschik, P.C.; Christman, M.C.; Rattner, B.A.; Ottinger, M.A.

2006-01-01

Ospreys (Pandion haliaetus) have been the focus of conservation efforts since their dramatic population decline attributed to dichlorodiphenyltrichloroethane and related chemicals in the 1960s. Several recent studies of ospreys nesting in the United States have indicated improved reproduction. However, the density of breeding ospreys varies greatly among locations, with some areas seemingly habitable but not occupied. Because of concerns about pollution in the highly industrialized portions of the Delaware River and Bay, USA, we evaluated contaminant exposure and productivity in ospreys nesting on the Delaware River and Bay in 2002. We characterized habitat in the coastal zone of Delaware, USA, and the area around the river in Pennsylvania, USA, using data we collected as well as extant information provided by state and federal sources. We characterized habitat based on locations of occupied osprey nests in Delaware and Pennsylvania. We evaluated water clarity, water depth, land use and land cover, nest availability, and contaminants in sediment for use in a nest-occupancy model. Our results demonstrated that the presence of occupied nests was associated with water depth, water clarity, distance to an occupied osprey nest, and presence of urban land use, whereas a companion study demonstrated that hatching success was associated with the principal components derived from organochlorine-contaminant concentrations in osprey eggs (total polychlorinated biphenyls, p,p'-dichlorodiphenylethylene, chlordane and metabolites, and heptachlor epoxide). Our study provides guidelines for resource managers and local conservation organizations in management of ospreys and in development of habitat models that are appropriate for other piscivorous and marsh-nesting birds.

Embryonic death is linked to maternal identity in the leatherback turtle (Dermochelys coriacea).

PubMed

Rafferty, Anthony R; Santidrián Tomillo, Pilar; Spotila, James R; Paladino, Frank V; Reina, Richard D

2011-01-01

Leatherback turtles have an average global hatching success rate of ~50%, lower than other marine turtle species. Embryonic death has been linked to environmental factors such as precipitation and temperature, although, there is still a lot of variability that remains to be explained. We examined how nesting season, the time of nesting each season, the relative position of each clutch laid by each female each season, maternal identity and associated factors such as reproductive experience of the female (new nester versus remigrant) and period of egg retention between clutches (interclutch interval) affected hatching success and stage of embryonic death in failed eggs of leatherback turtles nesting at Playa Grande, Costa Rica. Data were collected during five nesting seasons from 2004/05 to 2008/09. Mean hatching success was 50.4%. Nesting season significantly influenced hatching success in addition to early and late stage embryonic death. Neither clutch position nor nesting time during the season had a significant affect on hatching success or the stage of embryonic death. Some leatherback females consistently produced nests with higher hatching success rates than others. Remigrant females arrived earlier to nest, produced more clutches and had higher rates of hatching success than new nesters. Reproductive experience did not affect stage of death or the duration of the interclutch interval. The length of interclutch interval had a significant affect on the proportion of eggs that failed in each clutch and the developmental stage they died at. Intrinsic factors such as maternal identity are playing a role in affecting embryonic death in the leatherback turtle.

Analysis of sugarcane herbicides in marine turtle nesting areas and assessment of risk using in vitro toxicity assays.

PubMed

Allan, Hannah L; van de Merwe, Jason P; Finlayson, Kimberly A; O'Brien, Jake W; Mueller, Jochen F; Leusch, Frederic D L

2017-10-01

Agricultural processes are associated with many different herbicides that can contaminate surrounding environments. In Queensland, Australia, herbicides applied to agricultural crops may pose a threat to valuable coastal habitats including nesting beaches for threatened loggerhead turtles (Caretta caretta). This study 1) measured concentrations of herbicides in the beach sand of Mon Repos, an important marine turtle nesting beach in Australia that is adjacent to significant sugarcane crops, and 2) investigated the toxicity of these herbicides to marine turtles using a cell-based assay. Samples of sand from turtle nest depth and water from surrounding agricultural drains and wetlands were collected during the wet season when herbicide runoff was expected to be the greatest and turtles were nesting. Samples were extracted using solid phase extraction and extracts were analysed using chemical analysis targeting herbicides, as well as bioanalytical techniques (IPAM-assay and loggerhead turtle skin cell cytotoxicity assay). Twenty herbicides were detected in areas between sugarcane crops and the nesting beach, seven of which were also detected in the sand extracts. Herbicides present in the nearby wetland were also detected in the beach sand, indicating potential contamination of the nesting beach via the river outlet as well as ground water. Although herbicides were detected in nesting sand, bioassays using loggerhead turtle skin cells indicated a low risk of acute toxicity at measured environmental concentrations. Further research should investigate potentially more subtle effects, such as endocrine disruption and mixture effects, to better assess the threat that herbicides pose to this population of marine turtles. Copyright © 2017 Elsevier Ltd. All rights reserved.

The influence of habitat, prey abundance, sex, and breeding success on the ranging behavior of Prairie Falcons

USGS Publications Warehouse

Marzluff, J.M.; Kimsey, Bryan A.; Schueck, Linda S.; McFadzen, Mary E.; Vekasy, M.S.; Bednarz, James C.

1997-01-01

We studied the ranging behavior and habitat selection of radio-tagged Prairie Falcons (Falco mexicanus) during the breeding season in southwestern Idaho. The distribution and numbers of Townsend's ground squirrels (Spermophilus townsendii), the primary prey of Prairie Falcons in our study area, varied in response to drought during the study period. Prairie Falcons ranged over large areas (ca. 300 km2) and increased their foraging ranges in response to declining ground squirrels. Reptiles and birds were preyed upon most frequently when squirrels were rare. Males and females differed little in their use of space. Successful pairs ranged over smaller areas than non-nesters and unsuccessful pairs. Falcons nesting near habitat most suitable for ground squirrels ranged over smaller areas than those nesting farther from such habitat. Home ranges contained significantly more winterfat (Ceratoides lanata) and native perennial grasses (especially Poa secunda), and significantly less salt desert shrubs and exotic annual grasses than expected based on availability. Salt desert shrubs were found less than expected, based on availability in core areas within home ranges. Selection for winterfat and bluegrass in core areas was contingent upon selection at the larger scale of the home range; falcons with home ranges containing more winterfat and bluegrass than expected based on availability were less selective in their placement of core areas with respect to these habitats. We believe salient features of Prairie Falcon home ranges result largely from patchy distribution of landscape features associated with different densities and availabilities of Townsend's ground squirrels.

Ecological Succession in the Honey Bee Gut: Shift in Lactobacillus Strain Dominance During Early Adult Development.

PubMed

Anderson, Kirk E; Rodrigues, Pedro A P; Mott, Brendon M; Maes, Patrick; Corby-Harris, Vanessa

2016-05-01

In many vertebrates, social interactions and nutrition can affect the colonization of gut symbionts across generations. In the highly social honey bee, it is unknown to what extent the hive environment and older worker individuals contribute to the generational transmission of core gut bacteria. We used high-throughput sequencing to investigate the effect of nest materials and social contact on the colonization and succession of core hindgut microbiota in workers. With only brief exposure to hive materials following natural eclosion, gut bacterial communities at 3 and 7 days contained phylotypes typically found in the guts of mature adults regardless of treatment. Continuous exposure to nest materials or direct social interactions with mature adults did not affect the diversity or abundance of gut bacterial communities at the scale examined. Similarly, a common pollen supplement fed by beekeepers during pollen dearth had no effect. A consideration of unique OTUs revealed extensive microbial succession independent of treatment. The dominant Lactobacillus strain at 3 days was largely replaced by a different strain at day 7, revealing the colonization signature of a pioneer species. Similar but less pronounced patterns were evident in less abundant OTU's, many of which may influence community succession via alteration of the gut environment. Our results indicate that the process of bacterial community colonization in the hindgut is resilient to changes in the nutritional, hive, and social environment. Greater taxonomic resolution is needed to accurately resolve questions of ecological succession and typical proportional variation within and between core members of the gut bacterial community.

Comparison of PCR and culture to the indirect fluorescent-antibody test for diagnosis of Potomac horse fever.

PubMed

Mott, J; Rikihisa, Y; Zhang, Y; Reed, S M; Yu, C Y

1997-09-01

Potomac horse fever is an acute systemic equine disease caused by Ehrlichia risticii. Currently, serologic methods are widely used to diagnose this disease. However, serologic methods cannot determine whether the horse is presently infected or has been exposed to ehrlichial antigens in the past. The purpose of the present study was to compare the sensitivities of the nested PCR and cell culture with that of the indirect fluorescent-antibody (IFA) test for the diagnosis of Potomac horse fever. Blood and fecal specimens serially collected from a pony experimentally infected with E. risticii Maryland, blood specimens serially collected from mice inoculated with E. risticii Ohio 380, and blood and/or fecal specimens collected from 27 horses which had clinical signs compatible with Potomac horse fever were examined. These horses resided in Kentucky, Indiana, Pennsylvania, and Vermont. The IFA test titer became positive after 6 days postinoculation (p.i.) for the pony. A culture of the blood of the pony was positive for E. risticii starting on day 1 and was positive through day 28 p.i. By the nested PCR, E. risticii was detectable in the blood and feces of the pony starting on day 1 and was detectable through day 32 p.i. E. risticii was detected in the blood of subclinically infected mice by the nested PCR. Twenty-two clinical specimens were seropositive for E. risticii by the IFA test, with titers ranging from 1:20 to 1:1,280. E. risticii was cultured from 95% (20 of 21) of seropositive clinical blood specimens. E. risticii was detected in the blood by PCR in 81% (17 of 20) of the culture-positive clinical specimens. The study indicated that the nested PCR is as sensitive as culture for detecting infection with E. risticii.

COMPARISON OF A GENUS-SPECIFIC CONVENTIONAL PCR AND A SPECIES-SPECIFIC NESTED-PCR FOR MALARIA DIAGNOSIS USING FTA COLLECTED SAMPLES FROM KINGDOM OF SAUDI ARABIA.

PubMed

Al-Harthi, Saeed A

2015-12-01

Molecular tools are increasingly accepted as the most sensitive and reliable techniques for malaria diagnosis and epidemiological surveys. Also, collection of finger prick blood spots onto filter papers is the most simple and affordable method for samples preservation and posterior molecular analysis, especially in rural endemic regions where malaria remains a major health problem. Two malaria molecular diagnostic tests, a Plasmodium genus-specific conventional PCR and a Plasmodium species-specific Nested PCR, were evaluated using DNA templates prepared from Whatman-FTA cards' dry blood spots using both, Methanol-fixation/Heat-extraction and FTA commercial purification kit. A total of 121 blood samples were collected from six Saudi south-western endemic districts both, as thick and thin films for routine microscopic screening and onto FTA cards for molecular studies. Out of the 121 samples, 75 were P. falciparum positive by at least one technique. No other species of Plasmodium were detected. P. falciparum parasites were identified in 69/75 (92%) samples by microscopic screening in health care centers. P. genus-specific PCR was able to amplify P. falciparum DNA in 41/75 (55%) and 59/75 (79%) samples using Methanol-fixation/Heat-extraction and FTA purification kit, respectively. P. species-specific Nested PCR revealed 68/75 (91%) and 75/75 (100%) positive samples using DNA templates were isolated by Methanol-fixation/Heat- extraction and FTA purification methods, respectively. The species-specific Nested PCR applied to Whatman-FTA preserved and processed blood samples represents the best alternative to classical microscopy for malaria diagnosis, particularly in epidemiological screening.

Population trends and environmental contaminants in herons in the Tennessee Valley, 1980-81

USGS Publications Warehouse

Fleming, W.J.; Pullin, B.P.; Swineford, D.M.

1984-01-01

Great Blue Heron (Ardea herodias) eggs (N = 40) collected in 1980 from four of the largest colonies in the Tennessee Valley contained organochlorine pesticide, polychlorinated biphenyl (PCB), and chromium concentrations below those associated with reduced productivity. Low concentrations of organochlorine pesticide and PCB residues also were found in eggs (N = 31) from three of the larger Black-crowned Night-Heron (Nycticorax nycticorax) colonies in the Tennessee Valley. However, DDE concentrations in two of the Black-crowned Night-Heron eggs exceeded levels associated with reduced nesting success. Mercury was found in all eggs of both species with residues ranging to a high of 2.0 ppm; residues of this magnitude have not been identified as reducing nesting success of either of these two species. Green-backed Heron (Butorides striatus) eggs collected in 1981 near a former DDT manufacturing site in the Tennessee Valley had the highest DDE concentrations ever reported for this species; the effect of these high concentrations on productivity is not known. Eggshell thickness of Great Blue Heron, Green-backed Heron, and Black- crowned Night-Heron eggs averaged 7.5%, 7.6%, and 3% thinner, respectively, than shell thickness of eggs collected before 1947. This amount of thinning is not deleterious; intraclutch variation in shell thickness is often this high. Shell thickness in all three species was correlated (P lt 0.1) with DDE concentrations. The number of nesting pairs of Great Blue Herons and Black-crowned Night-Herons at each of the colonies studied has been stable or increasing during the previous decade. These population data, combined with the residue data, suggest that organochlorine pesticides, PCBs, mercury, and chromium are not adversely affecting these populations. However, we did not assess nesting success which would be a requisite for confirming this.

Contaminant exposure of birds nesting in Green Bay, Wisconsin, USA

USGS Publications Warehouse

Custer, Thomas W.; Dummer, Paul M.; Custer, Christine M.; Franson, J. Christian; Jones, Michael

2014-01-01

In earlier studies, elevated concentrations of polychlorinated biphenyl (PCB) and p,p'-dichlorodiphenyldichloroethylene (DDE) were reported in double-crested cormorant (Phalacrocorax auritus) eggs and tree swallow (Tachycineta bicolor) eggs and nestlings collected from lower Green Bay (WI, USA) in 1994 and 1995 and black-crowned night-heron (Nycticorax nycticorax) eggs collected in 1991. Comparable samples collected in 2010 and 2011 indicated that concentrations of PCBs were 35%, 62%, 70%, and 88% lower than in the early 1990s in tree swallow eggs, tree swallow nestlings, double-crested cormorant eggs, and black-crowned night-heron eggs, respectively; concentrations of DDE were 47%, 43%, 51%, and 80% lower, respectively. These declines are consistent with regional contaminant trends in other species. Concentrations of PCBs were higher in herring gull (Larus argentatus) than in black-crowned night-heron eggs collected from Green Bay in 2010; PCB concentrations in double-crested cormorant and tree swallow eggs were intermediate. The estimated toxicity of the PCB mixture in eggs of the insectivorous tree swallow was the equal to or greater than toxicity in the 3 piscivorous bird species. A multivariate analysis indicated that the composition percentage of lower-numbered PCB congeners was greater in eggs of the insectivorous tree swallow than in eggs of the 3 piscivorous species nesting in Green Bay. Dioxin and furan concentrations and the toxicity of these chemicals were also higher in tree swallows than these other waterbird species nesting in Green Bay.

Sequential soil transport and its influence on the spatial organisation of collective digging in leaf-cutting ants.

PubMed

Pielström, Steffen; Roces, Flavio

2013-01-01

The Chaco leaf-cutting ant Atta vollenweideri (Forel) inhabits large and deep subterranean nests composed of a large number of fungus and refuse chambers. The ants dispose of the excavated soil by forming small pellets that are carried to the surface. For ants in general, the organisation of underground soil transport during nest building remains completely unknown. In the laboratory, we investigated how soil pellets are formed and transported, and whether their occurrence influences the spatial organisation of collective digging. Similar to leaf transport, we discovered size matching between soil pellet mass and carrier mass. Workers observed while digging excavated pellets at a rate of 26 per hour. Each excavator deposited its pellets in an individual cluster, independently of the preferred deposition sites of other excavators. Soil pellets were transported sequentially over 2 m, and the transport involved up to 12 workers belonging to three functionally distinct groups: excavators, several short-distance carriers that dropped the collected pellets after a few centimetres, and long-distance, last carriers that reached the final deposition site. When initiating a new excavation, the proportion of long-distance carriers increased from 18% to 45% within the first five hours, and remained unchanged over more than 20 hours. Accumulated, freshly-excavated pellets significantly influenced the workers' decision where to start digging in a choice experiment. Thus, pellets temporarily accumulated as a result of their sequential transport provide cues that spatially organise collective nest excavation.

Contaminant exposure of birds nesting in Green Bay, Wisconsin, USA.

PubMed

Custer, Thomas W; Dummer, Paul M; Custer, Christine M; Franson, J Christian; Jones, Michael

2014-08-01

In earlier studies, elevated concentrations of polychlorinated biphenyl (PCB) and p,p'-dichlorodiphenyldichloroethylene (DDE) were reported in double-crested cormorant (Phalacrocorax auritus) eggs and tree swallow (Tachycineta bicolor) eggs and nestlings collected from lower Green Bay (WI, USA) in 1994 and 1995 and black-crowned night-heron (Nycticorax nycticorax) eggs collected in 1991. Comparable samples collected in 2010 and 2011 indicated that concentrations of PCBs were 35%, 62%, 70%, and 88% lower than in the early 1990s in tree swallow eggs, tree swallow nestlings, double-crested cormorant eggs, and black-crowned night-heron eggs, respectively; concentrations of DDE were 47%, 43%, 51%, and 80% lower, respectively. These declines are consistent with regional contaminant trends in other species. Concentrations of PCBs were higher in herring gull (Larus argentatus) than in black-crowned night-heron eggs collected from Green Bay in 2010; PCB concentrations in double-crested cormorant and tree swallow eggs were intermediate. The estimated toxicity of the PCB mixture in eggs of the insectivorous tree swallow was the equal to or greater than toxicity in the 3 piscivorous bird species. A multivariate analysis indicated that the composition percentage of lower-numbered PCB congeners was greater in eggs of the insectivorous tree swallow than in eggs of the 3 piscivorous species nesting in Green Bay. Dioxin and furan concentrations and the toxicity of these chemicals were also higher in tree swallows than these other waterbird species nesting in Green Bay. Published 2014 Wiley Periodicals, Inc.

Establishment of a nested-ASP-PCR method to determine the clarithromycin resistance of Helicobacter pylori.

PubMed

Luo, Xiao-Feng; Jiao, Jian-Hua; Zhang, Wen-Yue; Pu, Han-Ming; Qu, Bao-Jin; Yang, Bing-Ya; Hou, Min; Ji, Min-Jun

2016-07-07

To investigate clarithromycin resistance positions 2142, 2143 and 2144 of the 23SrRNA gene in Helicobacter pylori (H. pylori) by nested-allele specific primer-polymerase chain reaction (nested-ASP-PCR). The gastric tissue and saliva samples from 99 patients with positive results of the rapid urease test (RUT) were collected. The nested-ASP-PCR method was carried out with the external primers and inner allele-specific primers corresponding to the reference strain and clinical strains. Thirty gastric tissue and saliva samples were tested to determine the sensitivity of nested-ASP-PCR and ASP-PCR methods. Then, clarithromycin resistance was detected for 99 clinical samples by using different methods, including nested-ASP-PCR, bacterial culture and disk diffusion. The nested-ASP-PCR method was successfully established to test the resistance mutation points 2142, 2143 and 2144 of the 23SrRNA gene of H. pylori. Among 30 samples of gastric tissue and saliva, the H. pylori detection rate of nested-ASP-PCR was 90% and 83.33%, while the detection rate of ASP-PCR was just 63% and 56.67%. Especially in the saliva samples, nested-ASP-PCR showed much higher sensitivity in H. pylori detection and resistance mutation rates than ASP-PCR. In the 99 RUT-positive gastric tissue and saliva samples, the H. pylori-positive detection rate by nested-ASP-PCR was 87 (87.88%) and 67 (67.68%), in which there were 30 wild-type and 57 mutated strains in gastric tissue and 22 wild-type and 45 mutated strains in saliva. Genotype analysis showed that three-points mixed mutations were quite common, but different resistant strains were present in gastric mucosa and saliva. Compared to the high sensitivity shown by nested-ASP-PCR, the positive detection of bacterial culture with gastric tissue samples was 50 cases, in which only 26 drug-resistant strains were found through analyzing minimum inhibitory zone of clarithromycin. The nested-ASP-PCR assay showed higher detection sensitivity than ASP-PCR and drug sensitivity testing, which could be performed to evaluate clarithromycin resistance of H. pylori.

Establishment of a nested-ASP-PCR method to determine the clarithromycin resistance of Helicobacter pylori

PubMed Central

Luo, Xiao-Feng; Jiao, Jian-Hua; Zhang, Wen-Yue; Pu, Han-Ming; Qu, Bao-Jin; Yang, Bing-Ya; Hou, Min; Ji, Min-Jun

2016-01-01

AIM: To investigate clarithromycin resistance positions 2142, 2143 and 2144 of the 23SrRNA gene in Helicobacter pylori (H. pylori) by nested-allele specific primer-polymerase chain reaction (nested-ASP-PCR). METHODS: The gastric tissue and saliva samples from 99 patients with positive results of the rapid urease test (RUT) were collected. The nested-ASP-PCR method was carried out with the external primers and inner allele-specific primers corresponding to the reference strain and clinical strains. Thirty gastric tissue and saliva samples were tested to determine the sensitivity of nested-ASP-PCR and ASP-PCR methods. Then, clarithromycin resistance was detected for 99 clinical samples by using different methods, including nested-ASP-PCR, bacterial culture and disk diffusion. RESULTS: The nested-ASP-PCR method was successfully established to test the resistance mutation points 2142, 2143 and 2144 of the 23SrRNA gene of H. pylori. Among 30 samples of gastric tissue and saliva, the H. pylori detection rate of nested-ASP-PCR was 90% and 83.33%, while the detection rate of ASP-PCR was just 63% and 56.67%. Especially in the saliva samples, nested-ASP-PCR showed much higher sensitivity in H. pylori detection and resistance mutation rates than ASP-PCR. In the 99 RUT-positive gastric tissue and saliva samples, the H. pylori-positive detection rate by nested-ASP-PCR was 87 (87.88%) and 67 (67.68%), in which there were 30 wild-type and 57 mutated strains in gastric tissue and 22 wild-type and 45 mutated strains in saliva. Genotype analysis showed that three-points mixed mutations were quite common, but different resistant strains were present in gastric mucosa and saliva. Compared to the high sensitivity shown by nested-ASP-PCR, the positive detection of bacterial culture with gastric tissue samples was 50 cases, in which only 26 drug-resistant strains were found through analyzing minimum inhibitory zone of clarithromycin. CONCLUSION: The nested-ASP-PCR assay showed higher detection sensitivity than ASP-PCR and drug sensitivity testing, which could be performed to evaluate clarithromycin resistance of H. pylori. PMID:27433095

[Investigation of Coxiella burnetii contamination in commercial milk and PCR method for the detection of C. burnetii in egg].

PubMed

Hirai, Akihiko; Kaneko, Seiji; Nakama, Akiko; Ishizaki, Naoto; Odagiri, Megumi; Kai, Akemi; Sadamasu, Kenji; Shinkai, Takayuki; Yano, Kazuyoshi; Morozumi, Satoshi

2005-06-01

A total of 244 milk samples collected from supermarkets in Tokyo were examined for contamination with Coxiella burnetii. C. burnetii DNA was detected in 131 (53.7%) of the samples by nested PCR. PCR-positive samples were injected into immunosuppressed A/J strain mice. Of the 22 PCR-positive milk samples tested, none resulted in isolation of C. burnetii from the mice. Heat-treatment was sufficient to inactivate C. burnetii in commercial milk. In addition, a PCR detection method for C. burnetii in chicken egg was developed. Egg yolk was added to an equal volume of 1 mol/L of NaCl phosphate buffer and homogenized for removal of protein and lipid. After centrifugal separation, the supernatant was removed, and template DNA in the precipitate was extracted using SDS, proteinase K and NaI. Using such prepared samples, 3.2 x 10(1) C. burnetii particles in 1 g of egg yolk could be detected by nested PCR. All of 200 chicken egg samples collected from supermarkets in Tokyo were negative for C. burnetii by the nested PCR method.

ACVP-05: Virus Genetic Analysis from Cell-Free Plasma, Virally Infected Cells or Tissues and Cultured Supernatant Via Single Genome Amplification and Direct Sequencing | Frederick National Laboratory for Cancer Research

Cancer.gov

The Viral Evolution Core within the AIDS and Cancer Virus Program will extract viral RNA/DNA from cell-free or cell-associated samples. Complementary (cDNA) will be generated as needed, and cDNA or DNA will be diluted to a single copy prior to nested

Relative abundance of small mammals in nest core areas and burned wintering areas of Mexican spotted owls in the Sacramento Mountains, New Mexico

Treesearch

Joseph L. Ganey; Sean C. Kyle; Todd A. Rawlinson; Darrell L. Apprill; James P Ward

2014-01-01

Mexican Spotted Owls (Strix occidentalis lucida) are common in older forests within their range but also persist in many areas burned by wildfire and may selectively forage in these areas. One hypothesis explaining this pattern postulates that prey abundance increases in burned areas following wildfire. We observed movement to wintering areas within areas burned by...

Sand dune of Ruby, Arizona, an anthropogenically created biodiversity hotspot for wasps and their velvet ant parasitoids

Treesearch

Justin O. Schmidt

2013-01-01

A large artificial sand dune composed of finely crushed mine tailings was produced by deep mining operations at Ruby, Arizona. Today, the ghost town of Ruby is an important historical location and biodiversity refuge, with the newly formed dune forming the core of the refuge. The dune provides ideal nesting habitat for at least 13 species of sand-loving wasps,...

INNOVATIVE TECHNOLOGY EVALUATION REPORT ...

EPA Pesticide Factsheets

The Split Core Sampler for Submerged Sediments (Split Core Sampler) designed and fabricated by Arts Manufacturing & Supply, Inc., was demonstrated under the U.S. Environmental Protection Agency (EPA) Superfund Innovative Technology Evaluation Program in April and May 1999 at sites in EPA Regions 1 and 5, respectively. In addition to assessing ease of sampler operation, key objectives of the demonstration included evaluating the samplers ability to (1) consistently collect a given volume of sediment, (2) consistently collect sediment in a given depth interval, (3) collect samples with consistent characteristics from a homogenous layer of sediment, and (4) collect samples under a variety of site conditions. This report describes the demonstration results for the Split Core Sampler and two conventional samplers (the Hand Corer and Vibrocorer) used as reference samplers. During the demonstration, the Split Core Sampler performed as well as or better than the reference samplers. Based on visual observations, both the Split Core Sampler and reference samplers collected partially compressed samples of consolidated and unconsolidated sediments from the sediment surface downward; sample representativeness may be questionable because of core shortening and core compression. Sediment stratification was preserved for both consolidated and unconsolidated sediment samples collected by the Split Core Sampler and reference samplers. No sampler was able to collect samples

Organochlorine pesticides, PCBs, and mercury in hawk, falcon, eagle, and owl eggs from the Lipetsk, Voronezh, Novgorod and Saratov regions, Russia, 1992-1993

USGS Publications Warehouse

Henny, Charles J.; Ganusevich, S.A.; Ward, F.P.; Schwartz, T.R.; Mischenko, A.L.; Moseikin, V.N.; Sarychev, V.S.

1998-01-01

Fifty-two eggs (one per nest) of 12 species of raptors were collected in 1992-93 for contaminant analysis in three southern European locations in Russia. One Peregrine Falcon (Falco peregrinus) egg was also collected farther northwest in the Novgorod region. A high DDE concentration (27.3 ppm, wet weight [w/w]) in the Peregrine Falcon egg raised concern for the species in European Russia south of the Arctic Circle. Although a number of organochlorine contaminants were found in eggs of the other species, concentrations were all below known effect levels. Mercury levels were also extremely low. Nesting success in southern Russia in 1992 (only year with follow-up visits) appeared normal.

Impacts of Water Levels on Breeding Canada Geese and Methods for Mitigation and Management in the Southern Flathead Valley, Montana, 1983-1987 Final Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mackey, Dennis L.; Gregory, Shari K.; Matthews, William C. Jr.

Kerr Hydroelectric Dam is located at the south end of Flathead Lake, controls water levels on the lake and the Flathead River below the dam, and is currently operated as a load control facility. Current operation of Kerr Dam creates the greatest yearly water level fluctuations on both the lake and river during the Canada goose (Branta canadensis moffitti) brood and nesting period. Data collected from 1980-1982 indicated that goose nest numbers on the river were lower than during the 1950's, and that brood habitat on the lake may be limiting the goose population there. Our study was conducted frommore » 1983-1987 to determine the effects of Kerr Dam operation on Canada goose populations and habitat on the south half of Flathead Lake and the Flathead River, and to formulate management and mitigation recommendations. Nesting geese on the river appeared to be negatively affected by a lack of nest sites free from predators, and responded to available artificial nest structures with an increase in nest numbers and nesting success. Under current dam operation, river channel depths and widths do not discourage access to nesting islands by mammalian predators during some years and high predation on ground nests occurs. Intensively used brood areas on the lake and river were identified and described. Brood habitat on the lake was lower in quality and quantity than on the river due to dam operations. Gosling mortality on the lake was high, almost 2 times higher than on the river. Lake broods expended more energy obtaining food than river broods. Losses of brood habitat in the form of wet meadow marshes were documented and mitigation options developed. Management/mitigation alternatives and monitoring methods for nesting and brooding geese were identified.« less

Comparison of the Chemical Compositions of the Cuticle and Dufour's Gland of Two Solitary Bee Species from Laboratory and Field Conditions.

PubMed

Pitts-Singer, Theresa L; Hagen, Marcia M; Helm, Bryan R; Highland, Steven; Buckner, James S; Kemp, William P

2017-05-01

Species-specific biochemistry, morphology, and function of the Dufour's gland have been investigated for social bees and some non-social bee families. Most of the solitary bees previously examined are ground-nesting bees that use Dufour's gland secretions to line brood chambers. This study examines the chemistry of the cuticle and Dufour's gland of cavity-nesting Megachile rotundata and Osmia lignaria, which are species managed for crop pollination. Glandular and cuticular lipid compositions were characterized and compared to each other and according to the nesting experience of adult females. Major lipid classes found were hydrocarbons, free fatty acids, and wax esters. Many components were common to the cuticle and Dufour's glands of each species, yet not identical in number or relative composition. Wax esters and fatty acids were more prevalent in Dufour's glands of M. rotundata than on cuticles. Wax esters were more abundant on cuticles of O. lignaria than in Dufour's glands. In both species, fatty acids were more prevalent in glands of field-collected females compared to any other sample type. Chemical profiles of cuticles and glands were distinct from each other, and, for O. lignaria, profiles of laboratory-maintained bees could be distinguished from those of field-collected bees. Comparison of percentiles of individual components of cuticular and glandular profiles of the same bee showed that the proportions of some cuticular components were predictive of the proportion of the same glandular components, especially for nesting females. Lastly, evidence suggested that Dufour's gland is the major source of nest-marking substances in M. rotundata, but evidence for this role in O. lignaria was less conclusive.

Electrochemical cell design

DOEpatents

Arntzen, John D.

1978-01-01

An electrochemical cell includes two outer electrodes and a central electrode of opposite polarity, all nested within a housing having two symmetrical halves which together form an offset configuration. The outer electrodes are nested within raised portions within the side walls of each housing half while the central electrode sealingly engages the perimetric margins of the side-wall internal surfaces. Suitable interelectrode separators and electrical insulating material electrically isolate the central electrode from the housing and the outer electrodes. The outer electrodes are electrically connected to the internal surfaces of the cell housing to provide current collection. The nested structure minimizes void volume that would otherwise be filled with gas or heavy electrolyte and also provides perimetric edge surfaces for sealing and supporting at the outer margins of frangible interelectrode separator layers.

Mercury in blood and eggs of the sea turtle Lepidochelys olivacea from a nesting colony in Oaxaca, Mexico.

PubMed

Páez-Osuna, F; Calderón-Campuzano, M F; Soto-Jiménez, M F; Ruelas-Inzunza, J

2011-06-01

Mercury concentrations were assessed in the sea turtle Lepidochelys olivacea from a nesting colony of Oaxaca, Mexico; 25 female turtles were sampled, a total of 250 eggs were collected during the season 2005-2006. Higher concentrations were found in yolk fraction, while in blood and albumen mean levels were below of 0.0010μg g(-1) dry wt. On the basis of one nesting season, the maternal transfer of Hg via eggs-laying was estimated in 2.0±1.1%. According to international norms, the health of this population and its habitats is acceptable for Hg and corresponds to baseline levels of a nearly pristine environment. Copyright © 2011 Elsevier Ltd. All rights reserved.

Methane and carbon dioxide flux in the profile of wood ant (Formica aquilonia) nests and the surrounding forest floor during a laboratory incubation.

PubMed

Jílková, Veronika; Picek, Tomáš; Šestauberová, Martina; Krištůfek, Václav; Cajthaml, Tomáš; Frouz, Jan

2016-10-01

We compared methane (CH4) and carbon dioxide (CO2) fluxes in samples collected from the aboveground parts of wood ant nests and in the organic and mineral layer of the surrounding forest floor. Gas fluxes were measured during a laboratory incubation, and microbial properties (abundance of fungi, bacteria and methanotrophic bacteria) and nutrient contents (total and available carbon and nitrogen) were also determined. Both CO2 and CH4 were produced from ant nest samples, indicating that the aboveground parts of wood ant nests act as sources of both gases; in comparison, the forest floor produced about four times less CO2 and consumed rather than produced CH4 Fluxes of CH4 and CO2 were positively correlated with contents of available carbon and nitrogen. The methanotrophic community was represented by type II methanotrophic bacteria, but their abundance did not explain CH4 flux. Fungal abundance was greater in ant nest samples than in forest floor samples, but bacterial abundance was similar in both kinds of samples, suggesting that the organic materials in the nests may have been too recalcitrant for bacteria to decompose. The results indicate that the aboveground parts of wood ant nests are hot spots of CO2 and CH4 production in the forest floor. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Evaluation of efficiency of nested multiplex allele-specific PCR assay for detection of multidrug resistant tuberculosis directly from sputum samples.

PubMed

Mistri, S K; Sultana, M; Kamal, S M M; Alam, M M; Irin, F; Nessa, J; Ahsan, C R; Yasmin, M

2016-05-01

For an effective control of tuberculosis, rapid detection of multidrug resistant tuberculosis (MDR-TB) is necessary. Therefore, we developed a modified nested multiplex allele-specific polymerase chain reaction (MAS-PCR) method that enables rapid MDR-TB detection directly from sputum samples. The efficacy of this method was evaluated using 79 sputum samples collected from suspected tuberculosis patients. The performance of nested MAS-PCR method was compared with other MDR-TB detection methods like drug susceptibility testing (DST) and DNA sequencing. As rifampicin (RIF) resistance conforms to MDR-TB in greater than 90% cases, only the presence of RIF-associated mutations in rpoB gene was determined by DNA sequencing and nested MAS-PCR to detect MDR-TB. The concordance between nested MAS-PCR and DNA sequencing results was found to be 96·3%. When compared with DST, the sensitivity and specificity of nested MAS-PCR for RIF-resistance detection were determined to be 92·9 and 100% respectively. For developing- and high-TB burden countries, molecular-based tests have been recommended by the World Health Organization for rapid detection of MDR-TB. The results of this study indicate that, nested MAS-PCR assay might be a practical and relatively cost effective molecular method for rapid detection of MDR-TB from suspected sputum samples in developing countries with resource poor settings. © 2016 The Society for Applied Microbiology.

Seasonal infestation of birds with immature stages of Ixodes ricinus and Ixodes arboricola.

PubMed

Kocianová, Elena; Rusňáková Tarageľová, Veronika; Haruštiaková, Danka; Špitalská, Eva

2017-03-01

This study assessed the parasitization of cavity-nesting birds and ground-nesting/foraging birds with larvae and nymphs of two Ixodes species, Ixodes ricinus and Ixodes arboricola. Totals of 679 (52.3%) I. ricinus and 619 (47.7%) I. arboricola ticks were collected from 15 species of passerine birds which were caught during the nesting and non-nesting periods of 2003-2006, in the south-eastern part of the Czech Republic, the Drahanská Vrchovina Uplands. In the non-nesting period from October to March, 6.8% (101/1492) of birds were infested with ticks, mainly with I. arboricola larvae. In the non-nesting period, the average intensity of infestation by I. arboricola and I. ricinus was 8.5 and 1.5 individuals per infested bird, respectively. In the nesting period from April to June, 21.6% (50/232) of birds were infested by both tick species but mainly with I. ricinus nymphs. The average intensity of infestation by I. ricinus and I. arboricola was 13.3 and 10.8 individuals per infested bird, respectively. Altogether, 23.2% of the infested birds were parasitized by both immature life stages of one or both tick species. From an enzootic perspective, co-feeding and co-infestation of I. ricinus and I. arboricola subadults on passerine birds might happen and may be important for the dissemination of tick-borne agents. Copyright © 2017 Elsevier GmbH. All rights reserved.

Establishment of Vespa bicolor in Taiwan (Hymenoptera: Vespidae).

PubMed

Sung, I-Hsin; Lu, Sheng-Shan; Chao, Jung-Tai; Yeh, Wen-Chi; Lee, Wei-Jie

2014-01-01

The establishment of a hornet, Vespa bicolor F., in Taiwan was confirmed based on successful field collection of adults of both sexes and two subterranean colonies. Information on nesting habitat, nest measurement, and colony composition of this species are provided in this article. V. bicolor is the ninth hornet species ever recorded from Taiwan. Possible pathway for the introduction of this alien species is also discussed. © The Author 2014. Published by Oxford University Press on behalf of the Entomological Society of America.

Nested hyper-resolution modeling of urban areas for the National Water Model - The Dallas-Fort Worth Testbed

NASA Astrophysics Data System (ADS)

Noh, S. J.; Kim, S.; Habibi, H.; Seo, D. J.; Welles, E.; Philips, B.; Adams, E.; Smith, M. B.; Wells, E.

2017-12-01

With the development of the National Water Model (NWM), the NWS has made a step-change advance in operational water forecasting by enabling high-resolution hydrologic modeling across the US. As a part of a separate initiative to enhance flash flood forecasting and inundation mapping capacity, the NWS has been mandated to provide forecasts at even finer spatiotemporal resolutions when and where such information is demanded. In this presentation, we describe implementation of the NWM at a hyper resolution over a nested domain. We use WRF-Hydro as the core model but at significantly higher resolutions with scale-commensurate model parameters. The demonstration domain is multiple urban catchments within the Cities of Arlington and Grand Prairie in the Dallas-Fort Worth Metroplex. This area is susceptible to urban flooding due to the hydroclimatology coupled with large impervious cover. The nested model is based on hyper-resolution terrain data to resolve significant land surface features such as streets and large man-made structures, and forced by the high-resolution radar-based quantitative precipitation information. In this presentation, we summarize progress and preliminary results and share issues and challenges.

Comparison of a conventional and nested PCR for diagnostic confirmation and genotyping of Orientia tsutsugamushi.

PubMed

Janardhanan, Jeshina; Prakash, John Antony Jude; Abraham, Ooriapadickal C; Varghese, George M

2014-05-01

A nested polymerase chain reaction (PCR) targeting the 56-kDa antigen gene is currently the most commonly used molecular technique for confirmation of scrub typhus and genotyping of Orientia tsutsugamushi. In this study, we have compared the commonly used nested PCR (N-PCR) with a single-step conventional PCR (C-PCR) for amplification and genotyping. Eschar samples collected from 24 patients with scrub typhus confirmed by IgM enzyme-linked immunosorbent assay were used for DNA extraction following which amplifications were carried out using nested and C-PCR methods. The amplicons were sequenced and compared to other sequences in the database using BLAST. Conventional PCR showed a high positivity rate of 95.8% compared to the 75% observed using N-PCR. On sequence analysis, the N-PCR amplified region showed more variation among strains than the C-PCR amplified region. The C-PCR, which is more economical, provided faster and better results compared to N-PCR. Copyright © 2014 Elsevier Inc. All rights reserved.

Role of communally nesting ardeid birds in the epidemiology of West Nile virus revisited.

PubMed

Reisen, William K; Wheeler, Sarah; Armijos, M Veronica; Fang, Ying; Garcia, Sandra; Kelley, Kara; Wright, Stan

2009-06-01

Although herons and egrets in the family Ardeidae frequently have been associated with viruses in the Japanese encephalitis virus serocomplex, communal nesting colonies do not appear to be a focus of early season and rapid amplification of West Nile virus (WNV) in California. Evidence for repeated WNV infection was found by testing living and dead nestlings collected under trees with mixed species ardeid colonies nesting above in an oak grove near the University of California arboretum in Davis and in a Eucalyptus grove at a rural farmstead. However, mosquito infection rates at both nesting sites were low and positive pools did not occur earlier than at comparison sites within the City of Davis or at the Yolo Bypass wetlands managed for rice production and waterfowl habitat. Black-crowned night herons (Nycticorax nycticorax) were the most abundant and frequently infected ardeid species, indicating that WNV may be an important cause of mortality among nestlings of this species.

Prevalence of tick-borne encephalitis virus in ixodid ticks collected from the republic of Korea during 2011-2012.

PubMed

Yun, Seok-Min; Song, Bong Gu; Choi, Wooyoung; Park, Won Il; Kim, Sung Yun; Roh, Jong Yul; Ryou, Jungsang; Ju, Young Ran; Park, Chan; Shin, E-Hyun

2012-12-01

In this study, we demonstrated that TBEV-infected ticks have been distributed in the ROK, combined with our previous results. These results suggest that TBEV may exist in the ROK, and H. longicornis, H. flava, and I. nipponensis may be potential vectors of TBEV. In addition, these results emphasize the need for further epidemiological research of TBEV. We examined for the presence of RNA of TBEV by reverse transcriptase-nested polymerase chain reaction (RT-nested PCR) using ixodid ticks captured in 25 localities of 10 provinces. Ticks were collected by the flagging and dragging method or using sentinel BG traps at forests, grass thickets, and grassland. A total of 13,053 ticks belonging to two genera and four species were collected and pooled (1292 pools), according to collection site, species of tick, and developmental stage. Among 1292 pools, the envelope (E) protein gene of TBEV was detected using RT-nested PCR in 10 pools (3 pools of the 1,331 adult ticks and 7 pools of the 11,169 nymph ticks) collected from Gangwon-do province, Jeonrabuk-do province, and Jeju Island. The minimum infection rates for TBEV of Haemaphysalis longicornis, Haemaphysalis flava, and Ixodes nipponensis were 0.06%, 0.17%, and 2.38%, respectively. Phylogenetic analysis based on the partial E protein gene was performed to identify relationships between the TBEV strains. This showed that 10 Korean strains clustered with the Western subtype. In this study, we investigated the prevalence of tick-borne encephalitis virus (TBEV) in ixodid ticks from various regions of the Republic of Korea (ROK) during 2011-2012 to identify whether TBEV is circulating and to determine the endemic regions of TBEV.

Preliminary analysis of Greater Sage-grouse reproduction in the Virginia Mountains of northwestern Nevada

USGS Publications Warehouse

Coates, Peter S.; Lockyer, Zachary B.; Farinha, Melissa A.; Sweeney, Joelle M.; Johnson, Valerie M.; Meshriy, Matthew G.; Espinosa, Shawn P.; Delehanty, David J.; Casazza, Michael L.

2011-01-01

Relationships between habitat selection and population vital rates of greater sage-grouse (Centrocercus urophasianus; hereafter sage-grouse), recently designated as a candidate species under the Endangered Species Act, within the Great Basin are not well-understood. The growing development of renewable energy infrastructure within areas inhabited by sage-grouse is thought to influence predator and vegetation communities. For example, common ravens (Corvus corax), a synanthropic sage-grouse nest predator, are increasing range-wide and select transmission lines and other tall structures for nesting and perching. In the Virginia Mountains of northwestern Nevada, we collected preliminary information of space-use, habitat selection, and population vital rates during the nesting and brood-rearing period over two years on 56 sage-grouse. Additionally, videography at nest sites (n = 22) was used to identify sage-grouse nest predators. The study area is a potential site for renewable energy developments (i.e., wind and solar), and we plan to continue monitoring this population using a before-after-control-impact study design. The results reported here are preliminary and further data are required before conclusions can be drawn from this population of sage-grouse.

Antennal responses of an oligolectic bee and its cleptoparasite to plant volatiles.

PubMed

Dötterl, Stefan

2008-05-01

Cleptoparasitic or cuckoo bees lay their eggs in nests of other bees, and the parasitic larvae feed the food that had been provided for the host larvae. Nothing is known about the specific signals used by the cuckoo bees for host nest finding, but previous studies have shown that olfactory cues originating from the host bee alone, or the host bee and the larval provision are essential. Here, I compared by using gas chromatography coupled to electroantennographic detection (GC-EAD) the antennal responses of the oligolectic oil-bee Macropis fulvipes and their cleptoparasite, Epeoloides coecutiens, to dynamic headspace scent samples of Lysimachia punctata, a pollen and oil host of Macropis. Both bee species respond to some scent compounds emitted by L. punctata, and two compounds, which were also found in scent samples collected from a Macropis nest entrance, elicited clear signals in the antennae of both species. These compounds may not only play a role for host plant detection by Macropis, but also for host nest detection by Epeoloides. I hypothesise that oligolectic bees and their cleptoparasites use the same compounds for host plant and host nest detection, respectively.

Minimal changes in heart rate of incubating American Oystercatchers (Haematopus palliatus) in response to human activity

USGS Publications Warehouse

Borneman, Tracy E.; Rose, Eli T.; Simons, Theodore R.

2014-01-01

An organism's heart rate is commonly used as an indicator of physiological stress due to environmental stimuli. We used heart rate to monitor the physiological response of American Oystercatchers (Haematopus palliatus) to human activity in their nesting environment. We placed artificial eggs with embedded microphones in 42 oystercatcher nests to record the heart rate of incubating oystercatchers continuously for up to 27 days. We used continuous video and audio recordings collected simultaneously at the nests to relate physiological response of birds (heart rate) to various types of human activity. We observed military and civilian aircraft, off-road vehicles, and pedestrians around nests. With the exception of high-speed, low-altitude military overflights, we found little evidence that oystercatcher heart rates were influenced by most types of human activity. The low-altitude flights were the only human activity to significantly increase average heart rates of incubating oystercatchers (12% above baseline). Although statistically significant, we do not consider the increase in heart rate during high-speed, low-altitude military overflights to be of biological significance. This noninvasive technique may be appropriate for other studies of stress in nesting birds.

Compilation of 1990 annual reports of the Navy ELF Communications System Ecological-Monitoring Program. Volume 2. Tabs C thru F. Annual report, Jan-Dec 90

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zapotosky, J.E.

1991-08-01

This portion of the report includes monitoring of and data for arthropoda and earthworms; pollinating insects; and small mammals and nesting birds. During the 1990 growing season the ELF antenna was operated more frequently than in prior years. This provides 2 years of intermittent ELF exposure for the biological systems to react to the radiation, one year of very limited exposure and greater exposure in 1990. Arthropod and earthworm sampling was conducted at intervals of two weeks from early May to late October. High voltage transmission lines and magnetic fields have been shown to affect honeybee reproduction, survival, orientation, andmore » nest structure. ELF EM fields could have similar effects on native megachild bees. Changes in cell length, number of cells per nest, number of leaver per cell, orientation of nest entrances, and time to collect a round leaf pierce to cap a cell were monitored. We have not detected significant changes that could be attributed to ELF EM fields. Small mammal and nesting bird biological studies in the western Upper Peninsula of Michigan for the year 1990 are reported.« less

Comparison of the diagnostic performance of microscopic examination with nested polymerase chain reaction for optimum malaria diagnosis in Upper Myanmar.

PubMed

Kang, Jung-Mi; Cho, Pyo-Yun; Moe, Mya; Lee, Jinyoung; Jun, Hojong; Lee, Hyeong-Woo; Ahn, Seong Kyu; Kim, Tae Im; Pak, Jhang Ho; Myint, Moe Kyaw; Lin, Khin; Kim, Tong-Soo; Na, Byoung-Kuk

2017-03-16

Accurate diagnosis of Plasmodium infection is crucial for prompt malaria treatment and surveillance. Microscopic examination has been widely applied as the gold standard for malaria diagnosis in most part of malaria endemic areas, but its diagnostic value has been questioned, particularly in submicroscopic malaria. In this study, the diagnostic performance of microscopic examination and nested polymerase chain reaction (PCR) was evaluated to establish optimal malaria diagnosis method in Myanmar. A total of 1125 blood samples collected from residents in the villages and towns located in Naung Cho, Pyin Oo Lwin, Tha Beik Kyin townships and Mandalay of Upper Myanmar were screened by microscopic examination and species-specific nested PCR method. Among the 1125 blood samples, 261 samples were confirmed to be infected with malaria by microscopic examination. Evaluation of the 1125 samples by species-specific nested PCR analysis revealed that the agreement between microscopic examination and nested PCR was 87.3% (261/299). Nested PCR successfully detected 38 Plasmodium falciparum or Plasmodium vivax infections, which were missed in microscopic examination. Microscopic examinations also either misdiagnosed the infected Plasmodium species, or did not detect mixed infections with different Plasmodium species in 31 cases. The nested PCR method is more reliable than conventional microscopic examination for the diagnosis of malaria infections, and this is particularly true in cases of mixed infections and submicroscopic infections. Given the observed higher sensitivity and specificity of nested PCR, the molecular method holds enormous promise in malaria diagnosis and species differentiation, and can be applied as an effective monitoring tool for malaria surveillance, control and elimination in Myanmar.

Nesting ecology of roseate spoonbills at Nueces Bay, Texas

USGS Publications Warehouse

White, Donald H.; Mitchell, Christine A.; Cromartie, E.

1982-01-01

We conducted a study in 1978-1980 of the nesting ecology of Roseate Spoonbills (Ajaia ajaja) in a relatively polluted environment at Nueces Bay, Texas. For 154 marked nests, the average clutch size was 3.0 eggs; 73% of the eggs hatched, and 87% of the nests were successful (hatched at least 1 young). The average nest success rate (total fledglings:total eggs) was 50% or 1.5 fledglings per total nests. Incubation began the day after the first egg was laid, and the incubation period for each egg was 22 days. Eggs hatched in the order that they were laid; the first and second eggs hatched on consecutive days, and the second, third, and fourth eggs hatched every other day. Nest composition and size were highly consistent, but nest placement varied considerably and was dependent on the vegetative configuration of the dredge-material islands. Growth rate of nestlings conformed to a 'standard' growth curve, where body weight of nestlings at fledging equaled that of adults. There was no difference in weight gain among siblings based on actual age. Nestlings fledged at about 6 weeks of age, when feather development was complete. At fledging, the bills of juveniles had almost reached adult width, but bill length was only 67% that of adults. In general, environmental pollutants were low (<2 ppm) in spoonbill eggs, though a few eggs contained elevated concentrations of DDE (up to 15 ppm, wet weight). Some eggshells were 5% thinner than those in museum collections, but the degree of thinning was not within the range known to cause population declines. We conclude that organochlorine pollutants are not adversely affecting spoonbill reproduction at Nueces Bay, Texas, though the area is surrounded by industries and agricultural lands. Apparently, spoonbills are less sensitive to these contaminants than are other aquatic species.

Waiting for trees to grow: nest survival, brood parasitism, and the impact of reforestation efforts

USGS Publications Warehouse

Hazler, K.R.; Twedt, D.J.; Cooper, R.J.

2005-01-01

Of the forested wetlands that once covered the Mississippi Alluvial Valley, only -25% remain due to large-scale conversion to agriculture. Reforestation efforts are currently underway, but tracts planted with slow-growing oaks maintain the structure of a grassland for 5 yr or longer, and will require at least 40 yr to resemble a mature forest. Nonetheless, it is hoped that reforestation, even in early stages, can effectively increase core area in extant tracts of mature forest by reducing higher rates of nest failure and brood parasitism often associated with forest-agriculture interfaces. To test this, we monitored nests of a mature-forest specialist, the Acadian Flycatcher, in extensive bottomland forests adjacent to agricultural fields and reforested tracts (<20 yr-old). We used an information-theoretic approach to evaluate alternative hypotheses regarding the relative impacts of agriculture and reforestation in the landscape. Controlling for year, season, and stand basal area, there was little evidence that landscape context significantly affected nest survival, although survival tended to increase with decreasing amounts of agriculture. The probability of brood parasitism increased with greater proportions of open habitats in the landscape. There was much stronger support for the hypothesis that parasitism rates depended on the sum of agricultural and reforested tracts, rather than on the amount of agriculture alone. Thus, reforested tracts are not expected to have the desired effect of reducing parasitism rates in the adjacent mature forest until several decades have passed.

The Effect of COX-2 Inhibitors on the Aromatase Gene (CYP19) Expression in Human Breast Cancer

DTIC Science & Technology

2006-12-01

drug is it is associated with less side effects than non - steroidal inflammatory drugs ( NSAIDs ), particularly gastroduodenal ulcers. Randomized...Nested case-control study of effects of non - steroidal anti - inflammatory drugs on breast cancer risk and stage. B J Cancer 2000;83:112-120. 18...another non - steroidal anti - inflammatory ; 1 was determined to need neoadjuvant chemotherapy; 1 had a benign core biopsy, and 2

77 FR 47069 - Proposed Collection; Comment Request

Federal Register 2010, 2011, 2012, 2013, 2014

2012-08-07

... currently approved information collection known as ``Federal Home Loan Bank Acquired Member Assets, Core...; Comment Request: Federal Home Loan Bank Acquired Member Assets, Core Mission Activities, Investments and... Collection; Comment Request: Federal Home Loan Bank Acquired Member Assets, Core Mission Activities...

[Pollen analysis of the post-emergence residue of Centris tarsata Smith (Hymenoptera: Apidae, Centridini) nests].

PubMed

Dórea, Marcos da C; Dos Santos, Francisco de A R; Lima, Luciene C de L E; Figueroa, Luís E R

2009-01-01

A new treatment protocol was developed to analyze pollen residues found in nests of Centris tarsata Smith harvested from nest-traps. The study area was located in the Canudos Biological Station in the municipality of Canudos (09 masculine56'34'S; 38 masculine59'17'W), in the northeastern micro-region of Bahia State, Brazil. The local vegetation is an open caatinga (deciduous dryland vegetation), the regional climate is semi-arid, the average annual temperature is 24.1 masculineC, and the annual regional rainfall rate is 454 mm. Ten nests of C. tarsata were collected in trap-nests during the first semester of 2004. Pollen analysis from the nests required the development of a new methodology that combined techniques of palynological sediment analysis with the more common pollinic analysis by acetolysis. Microscopic analyses employed optical microscopy techniques. The pollinic spectrum of the samples from C. tarsata indicated the presence of 17 pollen types from seven plant families, which were present in assemblage of five to eleven pollen types, pointed to the plants used by bees to feed on their offspring. The most represented plant families were Leguminosae (49.3%) and Solanaceae (43.2%). The most frequent pollen types in the samples were from Solanum paniculatum (43.8%) and Senna rizzini (32.1%). The protocol developed provides a new tool for diet assessment of Centris and other groups of solitary bees.

Spatial scaling of core and dominant forest cover in the Upper Mississippi and Illinois River floodplains, USA

USGS Publications Warehouse

De Jager, Nathan R.; Rohweder, Jason J.

2011-01-01

Different organisms respond to spatial structure in different terms and across different spatial scales. As a consequence, efforts to reverse habitat loss and fragmentation through strategic habitat restoration ought to account for the different habitat density and scale requirements of various taxonomic groups. Here, we estimated the local density of floodplain forest surrounding each of ~20 million 10-m forested pixels of the Upper Mississippi and Illinois River floodplains by using moving windows of multiple sizes (1–100 ha). We further identified forest pixels that met two local density thresholds: 'core' forest pixels were nested in a 100% (unfragmented) forested window and 'dominant' forest pixels were those nested in a >60% forested window. Finally, we fit two scaling functions to declines in the proportion of forest cover meeting these criteria with increasing window length for 107 management-relevant focal areas: a power function (i.e. self-similar, fractal-like scaling) and an exponential decay function (fractal dimension depends on scale). The exponential decay function consistently explained more variation in changes to the proportion of forest meeting both the 'core' and 'dominant' criteria with increasing window length than did the power function, suggesting that elevation, soil type, hydrology, and human land use constrain these forest types to a limited range of scales. To examine these scales, we transformed the decay constants to measures of the distance at which the probability of forest meeting the 'core' and 'dominant' criteria was cut in half (S 1/2, m). S 1/2 for core forest was typically between ~55 and ~95 m depending on location along the river, indicating that core forest cover is restricted to extremely fine scales. In contrast, half of all dominant forest cover was lost at scales that were typically between ~525 and 750 m, but S 1/2 was as long as 1,800 m. S 1/2 is a simple measure that (1) condenses information derived from multi-scale analyses, (2) allows for comparisons of the amount of forest habitat available to species with different habitat density and scale requirements, and (3) can be used as an index of the spatial continuity of habitat types that do not scale fractally.

The dynamics of foraging trails in the tropical arboreal ant Cephalotes goniodontus.

PubMed

Gordon, Deborah M

2012-01-01

The foraging behavior of the arboreal turtle ant, Cephalotes goniodontus, was studied in the tropical dry forest of western Mexico. The ants collected mostly plant-derived food, including nectar and fluids collected from the edges of wounds on leaves, as well as caterpillar frass and lichen. Foraging trails are on small pieces of ephemeral vegetation, and persist in exactly the same place for 4-8 days, indicating that food sources may be used until they are depleted. The species is polydomous, occupying many nests which are abandoned cavities or ends of broken branches in dead wood. Foraging trails extend from trees with nests to trees with food sources. Observations of marked individuals show that each trail is travelled by a distinct group of foragers. This makes the entire foraging circuit more resilient if a path becomes impassable, since foraging in one trail can continue while a different group of ants forms a new trail. The colony's trails move around the forest from month to month; from one year to the next, only one colony out of five was found in the same location. There is continual searching in the vicinity of trails: ants recruited to bait within 3 bifurcations of a main foraging trail within 4 hours. When bait was offered on one trail, to which ants recruited, foraging activity increased on a different trail, with no bait, connected to the same nest. This suggests that the allocation of foragers to different trails is regulated by interactions at the nest.

Collective strategy for obstacle navigation during cooperative transport by ants.

PubMed

McCreery, Helen F; Dix, Zachary A; Breed, Michael D; Nagpal, Radhika

2016-11-01

Group cohesion and consensus have primarily been studied in the context of discrete decisions, but some group tasks require making serial decisions that build on one another. We examine such collective problem solving by studying obstacle navigation during cooperative transport in ants. In cooperative transport, ants work together to move a large object back to their nest. We blocked cooperative transport groups of Paratrechina longicornis with obstacles of varying complexity, analyzing groups' trajectories to infer what kind of strategy the ants employed. Simple strategies require little information, but more challenging, robust strategies succeed with a wider range of obstacles. We found that transport groups use a stochastic strategy that leads to efficient navigation around simple obstacles, and still succeeds at difficult obstacles. While groups navigating obstacles preferentially move directly toward the nest, they change their behavior over time; the longer the ants are obstructed, the more likely they are to move away from the nest. This increases the chance of finding a path around the obstacle. Groups rapidly changed directions and rarely stalled during navigation, indicating that these ants maintain consensus even when the nest direction is blocked. Although some decisions were aided by the arrival of new ants, at many key points, direction changes were initiated within the group, with no apparent external cause. This ant species is highly effective at navigating complex environments, and implements a flexible strategy that works for both simple and more complex obstacles. © 2016. Published by The Company of Biologists Ltd.

Multilevel processes and cultural adaptation: Examples from past and present small-scale societies.

PubMed

Reyes-García, V; Balbo, A L; Gomez-Baggethun, E; Gueze, M; Mesoudi, A; Richerson, P; Rubio-Campillo, X; Ruiz-Mallén, I; Shennan, S

2016-12-01

Cultural adaptation has become central in the context of accelerated global change with authors increasingly acknowledging the importance of understanding multilevel processes that operate as adaptation takes place. We explore the importance of multilevel processes in explaining cultural adaptation by describing how processes leading to cultural (mis)adaptation are linked through a complex nested hierarchy, where the lower levels combine into new units with new organizations, functions, and emergent properties or collective behaviours. After a brief review of the concept of "cultural adaptation" from the perspective of cultural evolutionary theory and resilience theory, the core of the paper is constructed around the exploration of multilevel processes occurring at the temporal, spatial, social and political scales. We do so by examining small-scale societies' case studies. In each section, we discuss the importance of the selected scale for understanding cultural adaptation and then present an example that illustrates how multilevel processes in the selected scale help explain observed patterns in the cultural adaptive process. We end the paper discussing the potential of modelling and computer simulation for studying multilevel processes in cultural adaptation.

Assessment of spatial variability of major-ion concentrations and del oxygen-18 values in surface snow, Upper Fremont Glacier, Wyoming, USA

USGS Publications Warehouse

Naftz, D.L.; Schuster, P.F.; Reddy, M.M.

1994-01-01

One hundred samples were collected from the surface of the Upper Fremont Glacier at equally spaced intervals defined by an 8100m2 snow grid to asesss the significance of lateral variability in major-ion concentrations and del oxygen-18 values. Comparison of the observed variability of each chemical constituent to the variability expected by measurement error indicated substantial lateral variability with the surface-snow layer. Results of the nested ANOVA indicate most of the variance for every constituent is in the values grouped at the two smaller geographic scales (between 506m2 and within 506m2 sections). The variance data from the snow grid were used to develop equations to evaluate the significance of both positive and negative concentration/value peaks of nitrate and del oxygen-18 with depth, in a 160m ice core. Values of del oxygen-18 in the section from 110-150m below the surface consistently vary outside the expected limits and possibly represents cooler temperatures during the Little Ice Age from about 1810 to 1725 A.D. -from Authors

Multilevel processes and cultural adaptation: Examples from past and present small-scale societies

PubMed Central

Reyes-García, V.; Balbo, A. L.; Gomez-Baggethun, E.; Gueze, M.; Mesoudi, A.; Richerson, P.; Rubio-Campillo, X.; Ruiz-Mallén, I.; Shennan, S.

2016-01-01

Cultural adaptation has become central in the context of accelerated global change with authors increasingly acknowledging the importance of understanding multilevel processes that operate as adaptation takes place. We explore the importance of multilevel processes in explaining cultural adaptation by describing how processes leading to cultural (mis)adaptation are linked through a complex nested hierarchy, where the lower levels combine into new units with new organizations, functions, and emergent properties or collective behaviours. After a brief review of the concept of “cultural adaptation” from the perspective of cultural evolutionary theory and resilience theory, the core of the paper is constructed around the exploration of multilevel processes occurring at the temporal, spatial, social and political scales. We do so by examining small-scale societies’ case studies. In each section, we discuss the importance of the selected scale for understanding cultural adaptation and then present an example that illustrates how multilevel processes in the selected scale help explain observed patterns in the cultural adaptive process. We end the paper discussing the potential of modelling and computer simulation for studying multilevel processes in cultural adaptation. PMID:27774109

Monolithic active pixel radiation detector with shielding techniques

DOEpatents

Deptuch, Grzegorz W.

2018-03-20

A monolithic active pixel radiation detector including a method of fabricating thereof. The disclosed radiation detector can include a substrate comprising a silicon layer upon which electronics are configured. A plurality of channels can be formed on the silicon layer, wherein the plurality of channels are connected to sources of signals located in a bulk part of the substrate, and wherein the signals flow through electrically conducting vias established in an isolation oxide on the substrate. One or more nested wells can be configured from the substrate, wherein the nested wells assist in collecting charge carriers released in interaction with radiation and wherein the nested wells further separate the electronics from the sensing portion of the detector substrate. The detector can also be configured according to a thick SOA method of fabrication.

Monolithic active pixel radiation detector with shielding techniques

DOEpatents

Deptuch, Grzegorz W.

2016-09-06

A monolithic active pixel radiation detector including a method of fabricating thereof. The disclosed radiation detector can include a substrate comprising a silicon layer upon which electronics are configured. A plurality of channels can be formed on the silicon layer, wherein the plurality of channels are connected to sources of signals located in a bulk part of the substrate, and wherein the signals flow through electrically conducting vias established in an isolation oxide on the substrate. One or more nested wells can be configured from the substrate, wherein the nested wells assist in collecting charge carriers released in interaction with radiation and wherein the nested wells further separate the electronics from the sensing portion of the detector substrate. The detector can also be configured according to a thick SOA method of fabrication.

Is That Frog Legal?

ERIC Educational Resources Information Center

Sanchez, Ana Maria

1982-01-01

Outlines New York and federal laws governing the collection of natural materials (plants, animals, birds, reptiles, amphibians, insects, bird nests) for teaching purposes. Notes sources of helpful information and required permits. (MH)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Herman, R.; O’Brien, S.

Using our own prototype sensor arrays that were deployed to collect microclimate data, we were able to visualize distinct differences in temperature, wind speed, and humidity over very small ranges of distance. We collected data across four polygons within the Barrow Environmental Observatory site. Our prototype microclimate arrays were based on an Arduino microcontroller, DS18B20 temperature sensors, DHT11 relative humidity/temperature sensors, and Vernier anemometers. Data were obtained in a small grid pattern with four sensors spaced 60 cm apart along the x-axis, and moved at 60 cm increments along a y-line across a polygon. Overlaying bird nest location with suchmore » data has allowed us to better answer our research question, “How do Arctic birds choose where to nest to maximize fitness in harsh Arctic environments?”« less

Space use by Forster's Terns breeding in South San Francisco Bay

USGS Publications Warehouse

Bluso-Demers, J.; Colwell, M.A.; Takekawa, John Y.; Ackerman, Joshua T.

2008-01-01

Parental care behaviors often differ in dimorphic seabirds, leading to sex-specific differences in foraging behaviors. However, few studies have examined sex-specific foraging behaviors in monomorphic seabirds. Using radio-telemetry, we studied Forster's Terns (Sterna forsteri) - a monomorphic and socially monogamous seabird - breeding in the South San Francisco Bay, California. Space use did not differ between males and females. Instead, space use varied by breeding stage and colony affiliation. Forster's Terns were located farthest from the nest during pre-breeding and post-breeding time periods, and closest to the nest during incubation and chick-rearing. Home-range size and core-use areas decreased as the breeding season progressed and were most concentrated in the post-breeding stage. The results of this and other studies indicate that tems, unlike other monomorphic seabirds studied, do not exhibit sex-specific differences in space use.

Hybrid chalcogenide nanoparticles: 2D-WS2 nanocrystals inside nested WS2 fullerenes.

PubMed

Hoshyargar, Faegheh; Corrales, Tomas P; Branscheid, Robert; Kolb, Ute; Kappl, Michael; Panthöfer, Martin; Tremel, Wolfgang

2013-10-28

The MOCVD assisted formation of nested WS2 inorganic fullerenes (IF-WS2) was performed by enhancing surface diffusion with iodine, and fullerene growth was monitored by taking TEM snapshots of intermediate products. The internal structure of the core-shell nanoparticles was studied using scanning electron microscopy (SEM) after cross-cutting with a focused ion beam (FIB). Lamellar reaction intermediates were found occluded in the fullerene particles. In contrast to carbon fullerenes, layered metal chalcogenides prefer the formation of planar, plate-like structures where the dangling bonds at the edges are stabilized by excess S atoms. The effects of the reaction and annealing temperatures on the composition and morphology of the final product were investigated, and the strength of the WS2 shell was measured by intermittent contact-mode AFM. The encapsulated lamellar structures inside the hollow spheres may lead to enhanced tribological activities.

Ultrasound triggered drug delivery with liposomal nested microbubbles.

PubMed

Wallace, N; Wrenn, S P

2015-12-01

When ultrasound contrast agent microbubbles are nested within a liposome, damage to the liposome membrane caused by both stable and inertial cavitation of the microbubble allows for release of the aqueous core of the liposome. Triggered release was not accomplished unless microbubbles were present within the liposome. Leakage was tested using fluorescence assays developed specifically for this drug delivery vehicle and qualitative measurements using an optical microscope. These studies were done using a 1 MHz focused ultrasound transducer while varying parameters including peak negative ultrasound pressure, average liposome diameter, and microbubble concentration. Two regimes exist for membrane disruption caused by cavitating microbubbles. A faster release rate, as well as permanent membrane damage are seen for samples exposed to high pressure (2.1-3.7 MPa). A slower release rate and dilation/temporary poration are characteristic of stable cavitation for low pressure studies (0.54-1.7 MPa). Copyright © 2015 Elsevier B.V. All rights reserved.

Disentangling the diversity of arboreal ant communities in tropical forest trees.

PubMed

Klimes, Petr; Fibich, Pavel; Idigel, Cliffson; Rimandai, Maling

2015-01-01

Tropical canopies are known for their high abundance and diversity of ants. However, the factors which enable coexistence of so many species in trees, and in particular, the role of foragers in determining local diversity, are not well understood. We censused nesting and foraging arboreal ant communities in two 0.32 ha plots of primary and secondary lowland rainforest in New Guinea and explored their species diversity and composition. Null models were used to test if the records of species foraging (but not nesting) in a tree were dependent on the spatial distribution of nests in surrounding trees. In total, 102 ant species from 389 trees occurred in the primary plot compared with only 50 species from 295 trees in the secondary forest plot. However, there was only a small difference in mean ant richness per tree between primary and secondary forest (3.8 and 3.3 sp. respectively) and considerably lower richness per tree was found only when nests were considered (1.5 sp. in both forests). About half of foraging individuals collected in a tree belonged to species which were not nesting in that tree. Null models showed that the ants foraging but not nesting in a tree are more likely to nest in nearby trees than would be expected at random. The effects of both forest stage and tree size traits were similar regardless of whether only foragers, only nests, or both datasets combined were considered. However, relative abundance distributions of species differed between foraging and nesting communities. The primary forest plot was dominated by native ant species, whereas invasive species were common in secondary forest. This study demonstrates the high contribution of foragers to arboreal ant diversity, indicating an important role of connectivity between trees, and also highlights the importance of primary vegetation for the conservation of native ant communities.

Disentangling the Diversity of Arboreal Ant Communities in Tropical Forest Trees

PubMed Central

Klimes, Petr; Fibich, Pavel; Idigel, Cliffson; Rimandai, Maling

2015-01-01

Tropical canopies are known for their high abundance and diversity of ants. However, the factors which enable coexistence of so many species in trees, and in particular, the role of foragers in determining local diversity, are not well understood. We censused nesting and foraging arboreal ant communities in two 0.32 ha plots of primary and secondary lowland rainforest in New Guinea and explored their species diversity and composition. Null models were used to test if the records of species foraging (but not nesting) in a tree were dependent on the spatial distribution of nests in surrounding trees. In total, 102 ant species from 389 trees occurred in the primary plot compared with only 50 species from 295 trees in the secondary forest plot. However, there was only a small difference in mean ant richness per tree between primary and secondary forest (3.8 and 3.3 sp. respectively) and considerably lower richness per tree was found only when nests were considered (1.5 sp. in both forests). About half of foraging individuals collected in a tree belonged to species which were not nesting in that tree. Null models showed that the ants foraging but not nesting in a tree are more likely to nest in nearby trees than would be expected at random. The effects of both forest stage and tree size traits were similar regardless of whether only foragers, only nests, or both datasets combined were considered. However, relative abundance distributions of species differed between foraging and nesting communities. The primary forest plot was dominated by native ant species, whereas invasive species were common in secondary forest. This study demonstrates the high contribution of foragers to arboreal ant diversity, indicating an important role of connectivity between trees, and also highlights the importance of primary vegetation for the conservation of native ant communities. PMID:25714831

Elevated temperatures are associated with stress in rooftop-nesting Common Nighthawk (Chordeiles minor) chicks.

PubMed

Newberry, Gretchen N; Swanson, David L

2018-01-01

Grasslands and riparian forests in southeastern South Dakota have been greatly reduced since historical times, primarily due to conversion to row-crop agriculture. Common Nighthawk ( Chordeiles minor ) nesting habitat includes grasslands, open woodlands and urban rooftops, but nesting sites in southeastern South Dakota are confined to rooftops, as natural nesting habitat is limited. Nighthawks nesting on exposed rooftop habitats may encounter thermal conditions that increase operative temperatures relative to vegetated land cover types. Mean humidity has increased and mean wind speed and cloud cover have decreased during the nighthawk breeding season from 1948 to 2016 in southeastern South Dakota. These changes might contribute to increasing operative temperatures at exposed rooftop nest sites and this could influence chick condition. We studied nest micro-climate and the plasma stress response for 24 rooftop-nesting nighthawk chicks from 17 nests during 2015 and 2016. High humidity prior to blood collection reduced both baseline and stress-induced plasma corticosterone (CORT). In contrast, high maximum temperatures during the day before sampling increased stress-induced CORT. The magnitude of the chick stress response was significantly negatively related to maximum wind speed for the week prior to CORT measurement. Other weather and micro-climate variables were not significant effectors of CORT metrics. Most chicks had low baseline CORT and were able to mount a stress response, but a subset of chicks ( n = 4) showed elevated baseline CORT and a negative association between the magnitude of stress response and ambient temperature. For this subset, mean ambient temperature for the day before sampling was significantly higher (2.3°C) than for chicks with typical baseline CORT levels. These data suggest that regional climate change trends could affect the ability of nighthawk chicks to mount a stress response, which, in turn, might influence the susceptibility of nighthawk chicks to climate change in the Northern Prairie region.

Reproductive biology of Pleurodema guayapae (Anura: Leptodactylidae: Leiuperinae).

PubMed

Valetti, Julián Alonso; Grenat, Pablo Raúl; Baraquet, Mariana; Martino, Adolfo Ludovico

2014-03-01

Pleurodema guayapae is a species that inhabits saline environments and semidesert zones from central Argentina. To date, the knowledge about the reproductive biology of this species is very poor, and our aim is to contribute to its knowledge with the description of some important reproductive aspects. For this, field work was undertaken in an area near to Patquia, La Rioja province. Sampling was undertaken during three summer periods (2006-2007; 2007-2008; 2008-2009) in Chamical-Patquia area, where we could find reproductively active populations. We observed and described breeding sites, type of clutch, process of foam nest construction, clutch and egg number and sizes, and hatching time and stage. Behaviour observations were performed from the time that males began to call until the pairs ended up the foam nests building, and layed the eggs. Additionally, one amplected pair was observed and filmed in the process of foam nest construction, and four amplectant pairs were collected and separatelly placed in plastic containers, for nests observations in the laboratory. Hatching time was based on three different foam nests of known age. We found that P. guayapae populations were acoustically active only after a rainfall. Its breeding sites were represented by ephemeral ponds of fresh water, product of rains. The males emitted their calls inside or outside these ponds. A detailed description of the foam nest construction process by both females and males was made. The clutches were in dome-shaped foam nest type of 6-9cm in diameter and 1-3cm in height, some of which were in communal nests. The nests had an average of 1 137 pigmented eggs. This species showed a short hatching time. Our results allow us to conclude that this species should be considered an extreme explosive breeder. Our results are discussed with others obtained for related species.

Comparative evaluation of uniplex, nested, semi-nested, multiplex and nested multiplex PCR methods in the identification of microbial etiology of clinically suspected infectious endophthalmitis.

PubMed

Bharathi, Madasamy Jayahar; Murugan, Nandagopal; Rameshkumar, Gunasekaran; Ramakrishnan, Rengappa; Venugopal Reddy, Yerahaia Chinna; Shivkumar, Chandrasekar; Ramesh, Srinivasan

2013-05-01

This study is aimed to determine the utility of various polymerase chain reaction (PCR) methods in vitreous fluids (VFs) for detecting the infectious genomes in the diagnosis of infectious endophthalmitis in terms of sensitivity and specificity. This prospective and consecutive analysis included a total of 66 VFs that were submitted for the microbiological evaluation, which were obtained from 66 clinically diagnosed endophthalmitis patients presented between November 2010 and October 2011 at the tertiary eye care referral centre in South India. Part of the collected VFs were subjected to cultures and smears, and the remaining parts were utilized for five PCR methods: uniplex, nested, semi-nested, multiplex and nested multiplex after extracting DNA, using universal eubacterial and Propionibacterium acnes species-specific primer sets targeting 16S rRNA gene in all bacteria and P. acnes, and panfungal primers, targeting 28S rRNA gene in all fungi. Of the 66 VFs, five (7.5%) showed positive results in smears, 16 (24%) in cultures and 43 (65%) showed positive results in PCRs. Among the 43 positively amplified VFs, 10 (15%) were positive for P. acnes genome, one for panfungal genome and 42 (62%) for eubacterial genome (including 10 P. acnes positives). Among 42 eubacterial-positive VFs, 36 were positive by both uniplex (first round) and multiplex (first round) PCRs, while nested (second round) and nested multiplex (second round) PCRs produced positive results in 42 and 41 VFs, respectively. Of the 43 PCR-positive specimens, 16 (37%) had positive growth (15 bacterial and one fungal) in culture. Of 50 culture-negative specimens, 27 (54%) were showed positive amplification, of which 10 were amplified for both P. acnes and eubacterial genomes and the remaining 17 were for eubacterial genome alone. Nested PCRs are superior than uniplex and multiplex PCR. PCRs proved to be a powerful tool in the diagnosis of endophthalmitis, especially for detecting uncultured microbes.

Speed versus accuracy in decision-making ants: expediting politics and policy implementation.

PubMed

Franks, Nigel R; Dechaume-Moncharmont, François-Xavier; Hanmore, Emma; Reynolds, Jocelyn K

2009-03-27

Compromises between speed and accuracy are seemingly inevitable in decision-making when accuracy depends on time-consuming information gathering. In collective decision-making, such compromises are especially likely because information is shared to determine corporate policy. This political process will also take time. Speed-accuracy trade-offs occur among house-hunting rock ants, Temnothorax albipennis. A key aspect of their decision-making is quorum sensing in a potential new nest. Finding a sufficient number of nest-mates, i.e. a quorum threshold (QT), in a potential nest site indicates that many ants find it suitable. Quorum sensing collates information. However, the QT is also used as a switch, from recruitment of nest-mates to their new home by slow tandem running, to recruitment by carrying, which is three times faster. Although tandem running is slow, it effectively enables one successful ant to lead and teach another the route between the nests. Tandem running creates positive feedback; more and more ants are shown the way, as tandem followers become, in turn, tandem leaders. The resulting corps of trained ants can then quickly carry their nest-mates; but carried ants do not learn the route. Therefore, the QT seems to set both the amount of information gathered and the speed of the emigration. Low QTs might cause more errors and a slower emigration--the worst possible outcome. This possible paradox of quick decisions leading to slow implementation might be resolved if the ants could deploy another positive-feedback recruitment process when they have used a low QT. Reverse tandem runs occur after carrying has begun and lead ants back from the new nest to the old one. Here we show experimentally that reverse tandem runs can bring lost scouts into an active role in emigrations and can help to maintain high-speed emigrations. Thus, in rock ants, although quick decision-making and rapid implementation of choices are initially in opposition, a third recruitment method can restore rapid implementation after a snap decision. This work reveals a principle of widespread importance: the dynamics of collective decision-making (i.e. the politics) and the dynamics of policy implementation are sometimes intertwined, and only by analysing the mechanisms of both can we understand certain forms of adaptive organization.

Locations and descriptions of gravity, box, and push cores collected in San Francisco Bay between January and February, 1990 and 1991

USGS Publications Warehouse

Anima, Roberto J.; Clifton, H. Edward; Reiss, Carol; Wong, Florence L.

2005-01-01

A project to study San Francisco Bay sediments collected over 300 sediment gravity cores; six push cores, and three box cores in San Francisco Bay during the years 1990-91. The purpose of the sampling effort is to establish a database on the Holocene sediment history of the bay. The samples described and mapped are the first effort to catalog and present the data collected. Thus far the cores have been utilized in various cooperative studies with state colleges and universities, and other USGS divisions. These cores serve as a base for ongoing multidisciplinary studies. The sediment studies project has initiated subsequent coring efforts within the bay using refined coring techniques to attain deeper cores.

Seasonal variation in male alternative reproductive tactics.

PubMed

Monroe, M J; Amundsen, T; Utne-Palm, A C; Mobley, K B

2016-12-01

Genetic parentage analyses reveal considerable diversity in alternative reproductive behaviours (e.g. sneaking) in many taxa. However, little is known about whether these behaviours vary seasonally and between populations. Here, we investigate seasonal variation in male reproductive behaviours in a population of two-spotted gobies (Gobiusculus flavescens) in Norway. Male two-spotted gobies guard nests, attract females and care for fertilized eggs. We collected clutches and nest-guarding males early and late in the breeding season in artificial nests and used microsatellite markers to reconstruct parentage from a subset of offspring from each nest. We hypothesized that mating, reproductive success and sneaking should be more prevalent early in the breeding season when competition for mates among males is predicted to be higher. However, parentage analyses revealed similar values of mating, reproductive success and high frequencies of successful sneaking early (30% of nests) and late (27% of nests) in the season. We also found that multiple females with eggs in the same nest were fertilized by one or more sneaker males, indicating that some males in this population engage in a satellite strategy. We contrast our results to previous work that demonstrates low levels of cuckoldry in a population in Sweden. Our results demonstrate marked stability in both the genetic mating system and male alternative reproductive tactics over the breeding season. However, sneaking rates may vary geographically within a species, likely due to local selection influencing ecological factors encountered at different locations. © 2016 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2016 European Society For Evolutionary Biology.

Development and evaluation of a nested-PCR assay for Senecavirus A diagnosis.

PubMed

Feronato, Cesar; Leme, Raquel A; Diniz, Jaqueline A; Agnol, Alais Maria Dall; Alfieri, Alice F; Alfieri, Amauri A

2018-02-01

Senecavirus A (SVA) has been associated with vesicular disease in weaned and adult pigs and with high mortality of newborn piglets. This study aimed to establish a nested-PCR assay for the routine diagnosis of SVA infection. Tissue samples (n = 177) were collected from 37 piglets of 18 pig farms located in four different Brazilian states. For the nested-PCR, a primer set was defined to amplify an internal VP1 fragment of 316 bp of SVA genome. Of the 37 piglets, 15 (40.5%) and 23 (62.2%) were positive for the SVA in the RT-PCR and nested-PCR assays, respectively. The SVA RNA was detected in 61/177 (34.5%) samples with the RT-PCR, while the nested-PCR assay showed 84/177 (47.5%) samples with the virus (p < 0.05). According to the herds, 11 (61.1%) and 16 (88.9%) of the 18 pig herds were positive for the SVA in the RT-PCR and nested-PCR assays, respectively. Nucleotide sequencing analysis revealed similarities of 98.7-100% among SVA Brazilian strains and of 86.6-98% with SVA strains from other countries. The nested-PCR assay in this study was suitable to recover the SVA RNA in biological specimens, piglets, and/or herds that were considered as negative in the RT-PCR assay, and is proposed for the routine investigation of the SVA infection in piglets, especially when other techniques are not available or when a great number of samples has to be examined.

Nuclear core and fuel assemblies

DOEpatents

Downs, Robert E.

1981-01-01

A fast flux nuclear core of a plurality of rodded, open-lattice assemblies having a rod pattern rotated relative to a rod support structure pattern. Elongated fuel rods are oriented on a triangular array and laterally supported by grid structures positioned along the length of the assembly. Initial inter-assembly contact is through strongbacks at the corners of the support pattern and peripheral fuel rods between adjacent assemblies are nested so as to maintain a triangular pitch across a clearance gap between the other portions of adjacent assemblies. The rod pattern is rotated relative to the strongback support pattern by an angle .alpha. equal to sin .sup.-1 (p/2c), where p is the intra-assembly rod pitch and c is the center-to-center spacing among adjacent assemblies.

High frequency variations of the main magnetic field: convergence of observations and theory (Petrus Peregrinus Medal Lecture)

NASA Astrophysics Data System (ADS)

Jault, Dominique

2013-04-01

Understanding the main magnetic field variations has been hindered by the discrepancy between the periods (from months to years) of the simplest linear wave phenomena and the relatively long time intervals (10 to 100 years) over which magnetic field changes can be confidently monitored. A theoretical description of short-period waves within the Earth's fluid core is at hand. Quasi-geostrophic inertial waves (akin to Rossby waves in the atmosphere) are slightly modified in the presence of magnetic fields and torsional oscillations consist of differential motion between coaxial rigid cylindrical annuli. Torsional oscillations are sensitive to the whole magnetic field that they shear in the course of their propagation. From their modelling, we have thus gained an estimate for the magnetic field strength in the core interior. There is now ongoing work to extend the theoretical framework to longer times. Furthermore, data collected from the Swarm constellation of three satellites to be launched this year by ESA will permit to better separate the internal and external magnetic signals. We may thus dream to detect quasi-geostrophic inertial waves. As the spectral ranges of theoretical models and observations begin to overlap, we can now go beyond the understanding of the magnetic field variations as the juxtaposition of partial models, arranged as a set of nested Matryoshka dolls. This talk will give illustrations for this statement, among which the question of induction in the lower mantle.

Combined use of real-time PCR and nested sequence-based typing in survey of human Legionella infection.

PubMed

Qin, T; Zhou, H; Ren, H; Shi, W; Jin, H; Jiang, X; Xu, Y; Zhou, M; Li, J; Wang, J; Shao, Z; Xu, X

2016-07-01

Legionnaires' disease (LD) is a globally distributed systemic infectious disease. The burden of LD in many regions is still unclear, especially in Asian countries including China. A survey of Legionella infection using real-time PCR and nested sequence-based typing (SBT) was performed in two hospitals in Shanghai, China. A total of 265 bronchoalveolar lavage fluid (BALF) specimens were collected from hospital A between January 2012 and December 2013, and 359 sputum specimens were collected from hospital B throughout 2012. A total of 71 specimens were positive for Legionella according to real-time PCR focusing on the 5S rRNA gene. Seventy of these specimens were identified as Legionella pneumophila as a result of real-time PCR amplification of the dotA gene. Results of nested SBT revealed high genetic polymorphism in these L. pneumophila and ST1 was the predominant sequence type. These data revealed that the burden of LD in China is much greater than that recognized previously, and real-time PCR may be a suitable monitoring technology for LD in large sample surveys in regions lacking the economic and technical resources to perform other methods, such as urinary antigen tests and culture methods.

Very low mitochondrial variability in a stingless bee endemic to cerrado.

PubMed

Brito, Rute Magalhães; de Oliveira Francisco, Flávio; Françoso, Elaine; Santiago, Leandro Rodrigues; Arias, Maria Cristina

2013-03-01

Partamona mulata is a stingless bee species endemic to cerrado, a severely threatened phytogeographical domain. Clearing for pasture without proper soil treatment in the cerrado facilitates the proliferation of termite ground nests, which are the nesting sites for P. mulata. The genetic consequences of these changes in the cerrado environment for bee populations are still understudied. In this work, we analyzed the genetic diversity of 48 colonies of P. mulata collected throughout the species' distribution range by sequencing two mitochondrial genes, cytochrome oxidase I and cytochrome B. A very low polymorphism rate was observed when compared to another Partamona species from the Atlantic forest. Exclusive haplotypes were observed in two of the five areas sampled. The sharing of two haplotypes between collection sites separated by a distance greater than the flight range of queens indicates an ancient distribution for these haplotypes. The low haplotype and nucleotide diversity observed here suggests that P. mulata is either a young species or one that has been through population bottlenecks. Locally predominant and exclusive haplotypes (H2 and H4) may have been derived from local remnants through cerrado deforestation and the expansion of a few colonies with abundant nesting sites.

Topsy-turvy: Turning the counter-current heat exchange of leatherback turtles upside down

USGS Publications Warehouse

Davenport, John; Jones, T. Todd; Work, Thierry M.; Balazs, George H.

2015-01-01

Counter-current heat exchangers associated with appendages of endotherms feature bundles of closely applied arteriovenous vessels. The accepted paradigm is that heat from warm arterial blood travelling into the appendage crosses into cool venous blood returning to the body. High core temperature is maintained, but the appendage functions at low temperature. Leatherback turtles have elevated core temperatures in cold seawater and arteriovenous plexuses at the roots of all four limbs. We demonstrate that plexuses of the hindlimbs are situated wholly within the hip musculature, and that, at the distal ends of the plexuses, most blood vessels supply or drain the hip muscles, with little distal vascular supply to, or drainage from the limb blades. Venous blood entering a plexus will therefore be drained from active locomotory muscles that are overlaid by thick blubber when the adults are foraging in cold temperate waters. Plexuses maintain high limb muscle temperature and avoid excessive loss of heat to the core, the reverse of the accepted paradigm. Plexuses protect the core from overheating generated by muscular thermogenesis during nesting.

Topsy-turvy: turning the counter-current heat exchange of leatherback turtles upside down.

PubMed

Davenport, John; Jones, T Todd; Work, Thierry M; Balazs, George H

2015-10-01

Counter-current heat exchangers associated with appendages of endotherms feature bundles of closely applied arteriovenous vessels. The accepted paradigm is that heat from warm arterial blood travelling into the appendage crosses into cool venous blood returning to the body. High core temperature is maintained, but the appendage functions at low temperature. Leatherback turtles have elevated core temperatures in cold seawater and arteriovenous plexuses at the roots of all four limbs. We demonstrate that plexuses of the hindlimbs are situated wholly within the hip musculature, and that, at the distal ends of the plexuses, most blood vessels supply or drain the hip muscles, with little distal vascular supply to, or drainage from the limb blades. Venous blood entering a plexus will therefore be drained from active locomotory muscles that are overlaid by thick blubber when the adults are foraging in cold temperate waters. Plexuses maintain high limb muscle temperature and avoid excessive loss of heat to the core, the reverse of the accepted paradigm. Plexuses protect the core from overheating generated by muscular thermogenesis during nesting. © 2015 The Author(s).

Assessing exotic plant species invasions and associated soil characteristics: A case study in eastern Rocky Mountain National Park, Colorado, USA, using the pixel nested plot design

USGS Publications Warehouse

Kalkhan, M.A.; Stafford, E.J.; Woodly, P.J.; Stohlgren, T.J.

2007-01-01

Rocky Mountain National Park (RMNP), Colorado, USA, contains a diversity of plant species. However, many exotic plant species have become established, potentially impacting the structure and function of native plant communities. Our goal was to quantify patterns of exotic plant species in relation to native plant species, soil characteristics, and other abiotic factors that may indicate or predict their establishment and success. Our research approach for field data collection was based on a field plot design called the pixel nested plot. The pixel nested plot provides a link to multi-phase and multi-scale spatial modeling-mapping techniques that can be used to estimate total species richness and patterns of plant diversity at finer landscape scales. Within the eastern region of RMNP, in an area of approximately 35,000 ha, we established a total of 60 pixel nested plots in 9 vegetation types. We used canonical correspondence analysis (CCA) and multiple linear regressions to quantify relationships between soil characteristics and native and exotic plant species richness and cover. We also used linear correlation, spatial autocorrelation and cross correlation statistics to test for the spatial patterns of variables of interest. CCA showed that exotic species were significantly (P < 0.05) associated with photosynthetically active radiation (r = 0.55), soil nitrogen (r = 0.58) and bare ground (r = -0.66). Pearson's correlation statistic showed significant linear relationships between exotic species, organic carbon, soil nitrogen, and bare ground. While spatial autocorrelations indicated that our 60 pixel nested plots were spatially independent, the cross correlation statistics indicated that exotic plant species were spatially associated with bare ground, in general, exotic plant species were most abundant in areas of high native species richness. This indicates that resource managers should focus on the protection of relatively rare native rich sites with little canopy cover, and fertile soils. Using the pixel nested plot approach for data collection can facilitate the ecological monitoring of these vulnerable areas at the landscape scale in a time- and cost-effective manner. ?? 2006 Elsevier B.V. All rights reserved.

Displaced epithelium after liposuction for gynecomastia.

PubMed

McLaughlin, Cristina S; Petrey, Chris; Grant, Shawn; Ransdell, Jill S; Reynolds, Carol

2011-08-01

The authors describe the case of a 36-year-old man with gynecomastia who was previously treated with liposuction of the breast for cosmetic purposes. Histologic examination of a subsequent excisional biopsy revealed nests of displaced epithelial cells in adipose tissue. Epithelial cell displacement is a well-known risk of core needle biopsies and fine-needle aspirations of breast lesions. However, to the authors' knowledge, epithelial displacement in gynecomastia after liposuction, mimicking invasive ductal carcinoma, has not previously been reported.

Evolving Self-Organized Behavior for Homogeneous and Heterogeneous UAV or UCAV Swarms

DTIC Science & Technology

2006-03-01

of sensed UAVs and a simple target associated pheromone . At its core, the sets of behaviors are built upon behavior rules describing formation...search randomly around the nest, dropping pheromones for communication. When an ant locates food and returns to the hive, it leaves a trail of... pheromones between the hive and the food-source. When other ants are exposed to the pheromone signal released by the first ant, they have a greater

Tracking the History and Ecological Changes of Rising Double-Crested Cormorant Populations Using Pond Sediments from Islands in Eastern Lake Ontario.

PubMed

Stewart, Emily M; Michelutti, Neal; Shenstone-Harris, Sarah; Grooms, Christopher; Weseloh, Chip; Kimpe, Linda E; Blais, Jules M; Smol, John P

2015-01-01

In the Laurentian Great Lakes region, the double-crested cormorant (Phalacrocorax auritus) has seen a thousand-fold population increase in recent decades. These large colonies of birds now often conflict with socioeconomic interests, particularly due to perceived competition with fisheries and the destruction of terrestrial vegetation in nesting habitats. Here we use dated sediment cores from ponds on islands in eastern Lake Ontario that receive waste inputs from dense colonies of cormorants and ring-billed gulls (Larus delawarensis) to chronicle the population rise of these species and assess their long-term ecological impacts. Modern water chemistry sampling from these sites reveals drastically elevated nutrient and major ion concentrations compared to reference ponds not influenced by waterbirds. Geochemical tracers in dated sediment cores, particularly δ15N and chlorophyll-a concentrations, track waterbird influences over time. Fossil diatom assemblages were dominated by species tolerant of hyper-eutrophic and polluted systems, which is in marked contrast to assemblages in reference sites. In addition to establishing long-term ecological impacts, this multi-proxy paleoecological approach can be used to determine whether islands of concern have been long-term nesting sites or were only recently colonized by cormorant or ring-billed gull populations across the Great Lakes, facilitating informed management decisions about controversial culling programs.

Nectar loads as fuel for collecting nectar and pollen in honeybees: adjustment by sugar concentration.

PubMed

Harano, Ken-Ichi; Nakamura, Jun

2016-06-01

When honeybee foragers leave the nest, they receive nectar from nest mates for use as fuel for flight or as binding material to build pollen loads. We examined whether the concentration of nectar carried from the nest changes with the need for sugar. We found that pollen foragers had more-concentrated nectar (61.8 %) than nectar foragers (43.8 %). Further analysis revealed that the sugar concentration of the crop load increased significantly with waggle duration, an indicator of food-source distance, in both groups of foragers. Crop volume also increased with waggle duration. The results support our argument that foragers use concentrated nectar when the need for sugar is high and suggest that they precisely adjust the amount of sugar in the crop by altering both volume and nectar concentrations. We also investigated the impact of the area where foragers receive nectar on the crop load concentration at departure. Although nectar and pollen foragers tend to load nectar at different areas in the nest, area did not have a significant effect on crop load concentration. Departing foragers showed an average of 2.2 momentary (<1 s) begging trophallactic contacts before leaving the nest. They might be rejecting nectar with inappropriate concentrations during these contacts.

Detection of Pneumocystis jirovecii by nested PCR in HIV-negative patients with pulmonary disease.

PubMed

Santos, Cristina Rodrigues; de Assis, Ângela M; Luz, Edson A; Lyra, Luzia; Toro, Ivan F; Seabra, José Claudio C; Daldin, Dira H; Marcalto, Tathiane U; Galasso, Marcos T; Macedo, Ronaldo F; Schreiber, Angélica Z; Aoki, Francisco H

Nested PCR can be used to determine the status of Pneumocystis jirovecii infection in other lung diseases. This study sought to detect a target DNA fragment (mitochondrial large subunit rRNA or mtL SUrRNA) of P. jirovecii in patients with lung disease who underwent bronchoscopy with collection of bronchoalveolar lavage (BAL). The results from toluidine blue staining were compared with those obtained using molecular methods that included an "in house" DNA extraction procedure, PCR and nested PCR. Fifty-five BAL samples from patients with atypical chest X-rays were screened for P. jirovecii. None of the samples was positive for P. jirovecii using toluidine blue staining. In contrast, P. jirovecii DNA was detected by nested PCR in BAL samples from 36 of 55 patients (65.5%). The lung diseases in the patients included cancer, pneumonia, tuberculosis, and chronic obstructive pulmonary disease (COPD). Other chronic problems in the patients included hypertension, diabetes, smoking, and alcoholism. Nested PCR showed high sensitivity for detecting P. jirovecii, especially when compared with toluidine blue staining. Using this method, P. jirovecii infection was detected in HIV-negative patients with lung disease. Copyright © 2016 Asociación Española de Micología. Publicado por Elsevier España, S.L.U. All rights reserved.

Lack of spatial genetic structure among nesting and wintering King Eiders

USGS Publications Warehouse

Pearce, J.M.; Talbot, S.L.; Pierson, Barbara J.; Petersen, M.R.; Scribner, K.T.; Dickson, D.L.; Mosbech, A.

2004-01-01

The King Eider (Somateria spectabilis) has been delineated into two broadly distributed breeding populations in North America (the western and eastern Arctic) on the basis of banding data and their use of widely separated Pacific and Atlantic wintering areas. Little is known about the level of gene flow between these two populations. Also unknown is whether behavioral patterns common among migratory waterfowl, such as site fidelity to wintering areas and pair formation at these sites, have existed for sufficient time to create a population structure defined by philopatry to wintering rather than to nesting locations. We used six nuclear microsatellite DNA loci and cytochrome b mitochondrial DNA sequence data to estimate the extent of spatial genetic differentiation among nesting and wintering areas of King Eiders across North America and adjacent regions. Estimates of interpopulation variance in microsatellite allele and mtDNA haplotype frequency were both low and nonsignificant based on samples from three wintering and four nesting areas. Results from nested clade analysis, mismatch distributions, and coalescent-based analyses suggest historical population growth and gene flow that collectively may have homogenized gene frequencies. The presence of several unique mtDNA haplotypes among birds wintering near Greenland suggests that gene flow may now be more limited between the western and eastern Arctic, which is consistent with banding data.

Profiles of environmental contaminants in hawksbill turtle egg yolks reflect local to distant pollution sources among nesting beaches in the Yucatán Peninsula, Mexico.

PubMed

Muñoz, Cynthia C; Vermeiren, Peter

2018-04-01

Knowledge of spatial variation in pollutant profiles among sea turtle nesting locations is limited. This poses challenges in identifying processes shaping this variability and sets constraints to the conservation management of sea turtles and their use as biomonitoring tools for environmental pollutants. We aimed to increase understanding of the spatial variation in polycyclic aromatic hydrocarbon (PAH), organochlorine pesticide (OCP) and polychlorinated biphenyl (PCB) compounds among nesting beaches. We link the spatial variation to turtle migration patterns and the persistence of these pollutants. Specifically, using gas chromatography, we confirmed maternal transfer of a large number of compounds (n = 68 out of 69) among 104 eggs collected from 21 nests across three nesting beaches within the Yucatán Peninsula, one of the world's most important rookeries for hawksbill turtles (Eretmochelys imbricata). High variation in PAH profiles was observed among beaches, using multivariate correspondence analysis and univariate Peto-Prentice tests, reflecting local acquisition during recent migration movements. Diagnostic PAH ratios reflected petrogenic origins in Celestún, the beach closest to petroleum industries in the Gulf of Mexico. By contrast, pollution profiles of OCPs and PCBs showed high similarity among beaches, reflecting the long-term accumulation of these pollutants at regional scales. Therefore, spatial planning of protected areas and the use of turtle eggs in biomonitoring needs to account for the spatial variation in pollution profiles among nesting beaches. Copyright © 2018 Elsevier Ltd. All rights reserved.

Comparative population structure of cavity-nesting sea ducks

USGS Publications Warehouse

Pearce, John M.; Eadie, John M.; Savard, Jean-Pierre L.; Christensen, Thomas K.; Berdeen, James; Taylor, Eric J.; Boyd, Sean; Einarsson, Árni

2014-01-01

A growing collection of mtDNA genetic information from waterfowl species across North America suggests that larger-bodied cavity-nesting species exhibit greater levels of population differentiation than smaller-bodied congeners. Although little is known about nest-cavity availability for these species, one hypothesis to explain differences in population structure is reduced dispersal tendency of larger-bodied cavity-nesting species due to limited abundance of large cavities. To investigate this hypothesis, we examined population structure of three cavity-nesting waterfowl species distributed across much of North America: Barrow's Goldeneye (Bucephala islandica), Common Goldeneye (B. clangula), and Bufflehead (B. albeola). We compared patterns of population structure using both variation in mtDNA control-region sequences and band-recovery data for the same species and geographic regions. Results were highly congruent between data types, showing structured population patterns for Barrow's and Common Goldeneye but not for Bufflehead. Consistent with our prediction, the smallest cavity-nesting species, the Bufflehead, exhibited the lowest level of population differentiation due to increased dispersal and gene flow. Results provide evidence for discrete Old and New World populations of Common Goldeneye and for differentiation of regional groups of both goldeneye species in Alaska, the Pacific Northwest, and the eastern coast of North America. Results presented here will aid management objectives that require an understanding of population delineation and migratory connectivity between breeding and wintering areas. Comparative studies such as this one highlight factors that may drive patterns of genetic diversity and population trends.

Alternative spawning strategy and temperature for larval emergence of longfin dace ( Agosia chrysogaster) in stream mesocosms

DOE Office of Scientific and Technical Information (OSTI.GOV)

Troia, Matthew J.; Whitney, James E.; Gido, Keith B.

2014-06-01

To determine if the strategy of spawning in saucer-like depressions is obligate or facultative for longfin dace ( Agosia chrysogaster), we collected adults from four sites in the upper Gila River (southwestern New Mexico), stocked them in separate outdoor stream-mesocosms lined with cobble substrate, and made daily observations for the presence of saucer-nests and hatched larvae. Larvae were observed from three of the four mesocosms and emerged at temperatures ranging from 19.2 24.0 °C. Here, the absence of saucer-nests in all mesocosms throughout the study indicates that longfin dace can spawn over cobble substrate and have larvae hatch successfully, suggestingmore » that longfin dace can use an alternate spawning strategy when sand substrate is not available for construction of saucer-nests.« less

Breeding-season food habits of burrowing owls (Athene cunicularia) in southwestern Dominican Republic

USGS Publications Warehouse

Wiley, J.W.

1998-01-01

Diet data from 20 Burrowing Owl (Athene cunicularia) nests were collected in southwestern Dominican Republic in 1976, 1982, and 1996. Invertebrates (53.3%) comprised the most numerous prey items (N = 396) delivered to nests by adult owls, but vertebrates (46.7%) were much better represented than in other studies of Burrowing Owl diet. Among vertebrates, birds (28.3% of all items) and reptiles (14.9%) were most important, whereas mammals (1.0%) and amphibians (2.5%) were less commonly delivered to nests. Vertebrates, however, comprised more than twice (69.2%) of the total biomass as invertebrates (30.8%), with birds (50.4%) and reptiles (12.8%) the most important of the vertebrate prey classes. A positive relationship was observed between bird species abundance and number of individuals taken as prey by Burrowing Owls.

Collecting, preparing, crossdating, and measuring tree increment cores

USGS Publications Warehouse

Phipps, R.L.

1985-01-01

Techniques for collecting and handling increment tree cores are described. Procedures include those for cleaning and caring for increment borers, extracting the sample from a tree, core surfacing, crossdating, and measuring. (USGS)

SPRUCE Peat Physical and Chemical Characteristics from Experimental Plot Cores, 2012

DOE Data Explorer

Iversen, C. M. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Hanson, P. J. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Brice, D. J. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Phillips, J. R. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; McFarlane, K. J. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Hobbie, E. A. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.; Kolka, R. K. [Oak Ridge National Laboratory, U.S. Department of Energy, Oak Ridge, Tennessee, U.S.A.

2012-01-01

This data set reports the results of physical and chemical analyses of peat core samples from the SPRUCE experimental study plots located in the S1-Bog. On August 13-15, 2012, a team of SPRUCE investigators and collaborators collected core samples of peat in the SPRUCE experimental plots. The goal was to characterize the biological, physical, and chemical characteristics of peat, and how those characteristics changed throughout the depth profile of the bog, prior to the initialization of the SPRUCE experimental warming and CO2 treatments. Cores were collected from 16 experimental plots; samples were collected from the hummock and hollow surfaces to depths of 200-300 cm in defined increments. Three replicate cores were collected from both hummock and hollow locations in each plot. The coring locations within each plot were mapped

Utilization of Molecular, Phenotypic, and Geographical Diversity to Develop Compact Composite Core Collection in the Oilseed Crop, Safflower (Carthamus tinctorius L.) through Maximization Strategy

PubMed Central

Kumar, Shivendra; Ambreen, Heena; Variath, Murali T.; Rao, Atmakuri R.; Agarwal, Manu; Kumar, Amar; Goel, Shailendra; Jagannath, Arun

2016-01-01

Safflower (Carthamus tinctorius L.) is a dryland oilseed crop yielding high quality edible oil. Previous studies have described significant phenotypic variability in the crop and used geographical distribution and phenotypic trait values to develop core collections. However, the molecular diversity component was lacking in the earlier collections thereby limiting their utility in breeding programs. The present study evaluated the phenotypic variability for 12 agronomically important traits during two growing seasons (2011–12 and 2012–13) in a global reference collection of 531 safflower accessions, assessed earlier by our group for genetic diversity and population structure using AFLP markers. Significant phenotypic variation was observed for all the agronomic traits in the representative collection. Cluster analysis of phenotypic data grouped the accessions into five major clusters. Accessions from the Indian Subcontinent and America harbored maximal phenotypic variability with unique characters for a few traits. MANOVA analysis indicated significant interaction between genotypes and environment for both the seasons. Initially, six independent core collections (CC1–CC6) were developed using molecular marker and phenotypic data for two seasons through POWERCORE and MSTRAT. These collections captured the entire range of trait variability but failed to include complete genetic diversity represented in 19 clusters reported earlier through Bayesian analysis of population structure (BAPS). Therefore, we merged the three POWERCORE core collections (CC1–CC3) to generate a composite core collection, CartC1 and three MSTRAT core collections (CC4–CC6) to generate another composite core collection, CartC2. The mean difference percentage, variance difference percentage, variable rate of coefficient of variance percentage, coincidence rate of range percentage, Shannon's diversity index, and Nei's gene diversity for CartC1 were 11.2, 43.7, 132.4, 93.4, 0.47, and 0.306, respectively while the corresponding values for CartC2 were 9.3, 58.8, 124.6, 95.8, 0.46, and 0.301. Each composite core collection represented the complete range of phenotypic and genetic variability of the crop including 19 BAPS clusters. This is the first report describing development of core collections in safflower using molecular marker data with phenotypic values and geographical distribution. These core collections will facilitate identification of genetic determinants of trait variability and effective utilization of the prevalent diversity in crop improvement programs. PMID:27807441

Enhanced detection rate of typhoid fever among clinically suspected patients in a tertiary referral hospital in Dhaka, Bangladesh using nested polymerase chain reaction technology.

PubMed

Khan, S; Miah, M R; Khatun, S

2015-12-01

A nested polymerase chain reaction (PCR) specific for Salmonella enterica subspecies enteric serovar Typhi was used for the detection of the pathogen, in blood. This study was done during the period of March 2013 to February 2014. A total of 80 clinically suspected cases of typhoid fever were included in the study. Blood was collected from all participating individuals. Nested PCR targeting the flagellin gene (fliC) of Salmonella Typhi & blood culture were done for each of the cases. The positivity rate of PCR & blood culture was 70%& 20% respectively. The positivity rate of PCR was significantly higher than blood culture (P< 0.05). With the nested PCR, S. Typhi DNAs were detected from blood specimens of 67.2% (43/64) patients among the suspected typhoid fever cases on the basis of clinical features but with negative cultures. We conclude that the PCR technique could be used as a novel diagnostic method of typhoid fever, particularly in culture-negative cases in an endemic country like Bangladesh.

Localizing Tortoise Nests by Neural Networks.

PubMed

Barbuti, Roberto; Chessa, Stefano; Micheli, Alessio; Pucci, Rita

2016-01-01

The goal of this research is to recognize the nest digging activity of tortoises using a device mounted atop the tortoise carapace. The device classifies tortoise movements in order to discriminate between nest digging, and non-digging activity (specifically walking and eating). Accelerometer data was collected from devices attached to the carapace of a number of tortoises during their two-month nesting period. Our system uses an accelerometer and an activity recognition system (ARS) which is modularly structured using an artificial neural network and an output filter. For the purpose of experiment and comparison, and with the aim of minimizing the computational cost, the artificial neural network has been modelled according to three different architectures based on the input delay neural network (IDNN). We show that the ARS can achieve very high accuracy on segments of data sequences, with an extremely small neural network that can be embedded in programmable low power devices. Given that digging is typically a long activity (up to two hours), the application of ARS on data segments can be repeated over time to set up a reliable and efficient system, called Tortoise@, for digging activity recognition.

[A study on identification of edible bird's nests by DNA barcodes].

PubMed

Chen, Yue-Juan; Liu, Wen-Jian; Chen, Dan-Na; Chieng, Sing-Hock; Jiang, Lin

2017-12-01

To provide theoretical basis for the traceability and quality evaluation of edible bird's nests (EBNs), the Cytb sequence was applied to identify the origin of EBNs. A total of 39 experiment samples were collected from Malaysia, Indonesia, Vietnam and Thailand. Genomic DNA was extracted for the PCR reaction. The amplified products were sequenced. 36 sequences were downloaded from Gen Bank including edible nest swiftlet, black nest swiftlet, mascarene swiftlet, pacific swiftlet and germain's swiftlet. MEGA 7.0 was used to analyze the distinction of sequences by the method of calculating the distances in intraspecific and interspecific divergences and constructing NJ and UPMGA phylogenetic tree based on Kimera-2-parameter model. The results showed that 39 samples were from three kinds of EBNs. Interspecific divergences were significantly greater than the intraspecific one. Samples could be successfully distinguished by NJ and UPMGA phylogenetic tree. In conclusion, Cytb sequence could be used to distinguish the origin of EBNs and it is efficient for tracing the origin species of EBNs. Copyright© by the Chinese Pharmaceutical Association.

Bird's nest-like nanographene shell encapsulated Si nanoparticles - Their structural and Li anode properties

NASA Astrophysics Data System (ADS)

Li, Beibei; Jiang, Yizhe; Jiang, Fan; Cao, Daxian; Wang, Hongkang; Niu, Chunming

2017-02-01

Bird's nest-like nanographene shell (NGS) encapsulated Si@SiO2 nanoparticles have been prepared by a simple chemical vapor deposition (CVD) method. The shell is comprised of a conformed coating with 4-10 layers of the nanographene, and nanographene spikes with the same thickness grown on the coating surface. The high crystallinity of the shell is demonstrated by XRD, HRTEM and Raman characterization. After SiO2 has been removed, distinctive void space is created between Si core and nested NGS. Statistical estimation from TEM images of 50 Si@void@NGS particles shows that the volume of void space is about 2.82 times of that of Si nanoparticle, sufficient to accommodate volume change from Si to Li15Si4. Evaluation of Si@void@NGS for Li ion anode reveals a specific capacity of 2634 mAh g-1 at a current density of 0.2 A g-1, and an excellent rate and cycling performance. The capacity decreases by 5.2%-2497 mAh g-1 after cycling at current densities of 0.5, 1, 2, 5 10, 20 A g-1. The excellent performance can be attributed to high conductivity and high stability of the shell, which remains intact after repeated cycling.

Arboreal ant colonies as 'hot-points' of cryptic diversity for myrmecophiles: the weaver ant Camponotus sp. aff. textor and its interaction network with its associates.

PubMed

Pérez-Lachaud, Gabriela; Lachaud, Jean-Paul

2014-01-01

Systematic surveys of macrofaunal diversity within ant colonies are lacking, particularly for ants nesting in microhabitats that are difficult to sample. Species associated with ants are generally small and rarely collected organisms, which makes them more likely to be unnoticed. We assumed that this tendency is greater for arthropod communities in microhabitats with low accessibility, such as those found in the nests of arboreal ants that may constitute a source of cryptic biodiversity. We investigated the invertebrate diversity associated with an undescribed, but already threatened, Neotropical Camponotus weaver ant. As most of the common sampling methods used in studies of ant diversity are not suited for evaluating myrmecophile diversity within ant nests, we evaluated the macrofauna within ant nests through exhaustive colony sampling of three nests and examination of more than 80,000 individuals. We identified invertebrates from three classes belonging to 18 taxa, some of which were new to science, and recorded the first instance of the co-occurrence of two brood parasitoid wasp families attacking the same ant host colony. This diversity of ant associates corresponded to a highly complex interaction network. Agonistic interactions prevailed, but the prevalence of myrmecophiles was remarkably low. Our data support the hypothesis of the evolution of low virulence in a variety of symbionts associated with large insect societies. Because most myrmecophiles found in this work are rare, strictly specific, and exhibit highly specialized biology, the risk of extinction for these hitherto unknown invertebrates and their natural enemies is high. The cryptic, far unappreciated diversity within arboreal ant nests in areas at high risk of habitat loss qualifies these nests as 'hot-points' of biodiversity that urgently require special attention as a component of conservation and management programs.

A model of northern pintail productivity and population growth rate

USGS Publications Warehouse

Flint, Paul L.; Grand, James B.; Rockwell, Robert F.

1998-01-01

Our objective was to synthesize individual components of reproductive ecology into a single estimate of productivity and to assess the relative effects of survival and productivity on population dynamics. We used information on nesting ecology, renesting potential, and duckling survival of northern pintails (Anas acuta) collected on the Yukon-Kuskokwim Delta (Y-K Delta), Alaska, 1991-95, to model the number of ducklings produced under a range of nest success and duckling survival probabilities. Using average values of 25% nest success, 11% duckling survival, and 56% renesting probability from our study population, we calculated that all young in our population were produced by 13% of the breeding females, and that early-nesting females produced more young than later-nesting females. Further, we calculated, on average, that each female produced only 0.16 young females/nesting season. We combined these results with estimates of first-year and adult survival to examine the growth rate (X) of the population and the relative contributions of these demographic parameters to that growth rate. Contrary to aerial survey data, the population projection model suggests our study population is declining rapidly (X = 0.6969). The relative effects on population growth rate were 0.1175 for reproductive success, 0.1175 for first-year survival, and 0.8825 for adult survival. Adult survival had the greatest influence on X for our population, and this conclusion was robust over a range of survival and productivity estimates. Given published estimates of annual survival for adult females (61%), our model suggested nest success and duckling survival need to increase to approximately 40% to achieve population stability. We discuss reasons for the apparent discrepancy in population trends between our model and aerial surveys in terms of bias in productivity and survival estimates.

Migration patterns, use of stopover areas, and austral summer movements of Swainson's hawks

USGS Publications Warehouse

Kocher, Michael N.; Fuller, Mark R.; Schueck, Linda S.; Bond, Laura; Bechard, Marc J.; Woodbridge, Brian; Holroyd, Geoff L.; Martell, Mark S.; Banasch, Ursula

2011-01-01

from 1995 to 1998, we tracked movements of adult Swainson's Hawks (Buteo swainsoni), using satellite telemetry to characterize migration, important stopover areas, and movements in the austral summer. we tagged 46 hawks from July to September on their nesting grounds in seven U.S. states and two Canadian provinces. Swainson's Hawks followed three basic routes south on a broad front, converged along the east coast of cen-tral Mexico, and followed a concentrated corridor to a communal area in central Argentina for the austral summer. North of 20° N, southward and northward tracks differed little for individuals from east of the continental divide but differed greatly (up to 1700 km) for individuals from west of the continental divide. Hawks left the breeding grounds mid-August to mid-October; departure dates did not differ by location, year, or sex. Southbound migra-tion lasted 42 to 98 days, northbound migration 51 to 82 days. Southbound, 36% of the Swainson's Hawks departed the nesting grounds nearly 3 weeks earlier than the other radio-marked hawks and made stopovers 9.0–26.0 days long in seven separate areas, mainly in the southern great Plains, southern Arizona and New Mexico, and north-central Mexico. The birds stayed in their nonbreeding range for 76 to 128 days. All used a core area in central Ar-gentina within 23% of the 738 800-km2 austral summer range, where they frequently moved long distances (up to 1600 km). Conservation of Swainson's Hawks must be an international effort that considers habitats used during nesting and non-nesting seasons, including migration stopovers.

MIGRATION PATTERNS, USE OF STOPOVER AREAS, AND AUSTRAL SUMMER MOVEMENTS OF SWAINSON'S HAWKS.

PubMed

Kochert, Michael N; Fuller, Mark R; Schueck, Linda S; Bond, Laura; Bechard, Marc J; Woodbridge, Brian; Holroyd, Geoff; Martell, Mark; Banasch, Ursula

From 1995-1998, we tracked movements of adult Swainson's Hawks ( Buteo swainsoni ) using satellite telemetry to characterize migration, important stopover areas, and austral summer movements. We tagged 46 hawks from July - September on their nesting grounds in seven U.S. states and two Canadian provinces. Swainson's Hawks basically followed three routes south on a broad front, converged along the east coast of central Mexico, and followed a concentrated corridor to a communal austral summer area in central Argentina. North of 20° N, southward and northward tracks differed little for individuals from east of the Continental Divide but differed greatly (up to 1700 km) for individuals from west of the Continental Divide. Hawks left the breeding grounds mid-August to mid-October; departure dates did not differ by location, year, or sex. South migration lasted 42 to 98 days, and north migration took 51 to 82 days. On south migration, 36% of the Swainson's Hawks departed the nesting grounds nearly 3 weeks earlier than the other radio marked hawks and made stopovers 9.0 - 26.0 days long in seven separate areas, mainly in the southern Great Plains, southern Arizona and New Mexico, and north-central Mexico. The austral period lasted 76 to 128 days. All Swainson's Hawks used a core area in central Argentina within 23% of the 738800 km 2 austral summer range where they frequently moved long distances (up to 1600 km). Conservation of Swainson's Hawks must be an international effort that considers habitats used during nesting and non-nesting seasons including migration stopovers.

Belted kingfishers: Under surveillance and sampled in the privacy of their own burrow

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baron, L.A.; Ashwood, T.L.

The belted kingfisher, a common piscivore of the Oak Ridge Reservation (ORR), bioaccumulates contaminants from consumption of aquatic prey. Three kingfisher carcasses found near contaminated streams on the ORR were analyzed. Mercury, cadmium, and selenium bioaccumulated within the liver, kidney, and feathers. Additionally, PCB-1254 accumulated in muscle and lipid tissue, while Cesium-137 accumulated within the muscle and whole body. These contaminant levels have been shown to produce a variety of toxicological effects (i.e., reproductive impairment, central nervous system dysfunction) within other species of birds. In addition to use of this data for ecological risk assessment, kingfishers can also be monitoredmore » as a viable bioindicator species reflecting environmental contaminant levels over time. However, current sampling methods of burrow excavation or the use of mist nets can be detrimental to the reproductive success of the birds. The authors present a method for obtaining adequate samples of feathers and other remnants (i.e., egg shells, dried regurgitant) found in the burrow during or following the nesting season. The collection of samples following surveillance of the burrow and its contents was performed with the use of a 15 ft-long flexible, portable probe containing a video camera. Once sighted with the probe, contents of the burrow were collected by insertion of an additional tube attached to a hand held vacuum cleaner (Dirt Devil{reg_sign}). Feathers collected from a nest at an uncontaminated site contained selenium, lead and mercury. Cesium-137 was found in an egg shell collected from a nest at a radiologically contaminated site. Close-up photos of a kingfisher mother incubating her eggs and nestlings within two burrows will also be shown. This surveillance and sampling technique can also be used for monitoring other burrowing terrestrial species.« less

The Dynamics of Foraging Trails in the Tropical Arboreal Ant Cephalotes goniodontus

PubMed Central

Gordon, Deborah M.

2012-01-01

The foraging behavior of the arboreal turtle ant, Cephalotes goniodontus, was studied in the tropical dry forest of western Mexico. The ants collected mostly plant-derived food, including nectar and fluids collected from the edges of wounds on leaves, as well as caterpillar frass and lichen. Foraging trails are on small pieces of ephemeral vegetation, and persist in exactly the same place for 4–8 days, indicating that food sources may be used until they are depleted. The species is polydomous, occupying many nests which are abandoned cavities or ends of broken branches in dead wood. Foraging trails extend from trees with nests to trees with food sources. Observations of marked individuals show that each trail is travelled by a distinct group of foragers. This makes the entire foraging circuit more resilient if a path becomes impassable, since foraging in one trail can continue while a different group of ants forms a new trail. The colony’s trails move around the forest from month to month; from one year to the next, only one colony out of five was found in the same location. There is continual searching in the vicinity of trails: ants recruited to bait within 3 bifurcations of a main foraging trail within 4 hours. When bait was offered on one trail, to which ants recruited, foraging activity increased on a different trail, with no bait, connected to the same nest. This suggests that the allocation of foragers to different trails is regulated by interactions at the nest. PMID:23209749

Constant Temperature Artificial Incubation of Spawned Eggs in Natural Nests from the Chinese Freshwater Soft-Shelled Turtle, Tryonyx sinensis Strauch(1862)

PubMed Central

Oh, Young Nam; Kim, Sung Han

2017-01-01

ABSTRACT On June 14, 2008 (the first experiment) and July 24, 2008 (the second experiment), the shores of the Boseong River and the sandy beaches, Seokgok-myun, Moksadong-myun, Gokseong-gun in Jeollanam Province were investigated and a total of 29 soft-shelled turtle (Tryonyx sinensis) eggs in the natural spawning nest eggs were collected (13 eggs were collected in the first experiment and 16 eggs in the second experiment). The temperatures in the natural spawning nests were 25.9-36.9±0.5℃, the depth of the eggs was 5.2-7.5±0.5 cm as the distance of the average 6.4±0.5 cm. 29 eggs were scattered at least 0.2 cm interval. Artificial incubation of 29 eggs was conducted in artificial nest boxes in thermo-plastic composition of the incubator, and then incubated at 26.5-35.5±0.5℃, and an average constant temperature was 31.2-32.1±1.0℃. The incubation days ranged from 53 to 55. In case of most turtles, incubation at 31℃ (higher temperatures) generally produces all or mostly females, while incubation at 25℃(cooler temperatures) produces all or mostly males. Exceptionally, in case of genus Trionyx, the sex ratio of female : male of T. sinensis of a freshwater soft-shelled turtle was approximately 1:1, which differs from other genera of turtles and makes T. sinensis Strauch only turtles presently known to lack temperature-dependent sex determination. PMID:28484749

Developing core collections to optimize the management and the exploitation of diversity of the coffee Coffea canephora.

PubMed

Leroy, Thierry; De Bellis, Fabien; Legnate, Hyacinthe; Musoli, Pascal; Kalonji, Adrien; Loor Solórzano, Rey Gastón; Cubry, Philippe

2014-06-01

The management of diversity for conservation and breeding is of great importance for all plant species and is particularly true in perennial species, such as the coffee Coffea canephora. This species exhibits a large genetic and phenotypic diversity with six different diversity groups. Large field collections are available in the Ivory Coast, Uganda and other Asian, American and African countries but are very expensive and time consuming to establish and maintain in large areas. We propose to improve coffee germplasm management through the construction of genetic core collections derived from a set of 565 accessions that are characterized with 13 microsatellite markers. Core collections of 12, 24 and 48 accessions were defined using two methods aimed to maximize the allelic diversity (Maximization strategy) or genetic distance (Maximum-Length Sub-Tree method). A composite core collection of 77 accessions is proposed for both objectives of an optimal management of diversity and breeding. This core collection presents a gene diversity value of 0.8 and exhibits the totality of the major alleles (i.e., 184) that are present in the initial set. The seven proposed core collections constitute a valuable tool for diversity management and a foundation for breeding programs. The use of these collections for collection management in research centers and breeding perspectives for coffee improvement are discussed.

Increasing nest predation will be insufficient to maintain polar bear body condition in the face of sea ice loss.

PubMed

Dey, Cody J; Richardson, Evan; McGeachy, David; Iverson, Samuel A; Gilchrist, Hugh G; Semeniuk, Christina A D

2017-05-01

Climate change can influence interspecific interactions by differentially affecting species-specific phenology. In seasonal ice environments, there is evidence that polar bear predation of Arctic bird eggs is increasing because of earlier sea ice breakup, which forces polar bears into nearshore terrestrial environments where Arctic birds are nesting. Because polar bears can consume a large number of nests before becoming satiated, and because they can swim between island colonies, they could have dramatic influences on seabird and sea duck reproductive success. However, it is unclear whether nest foraging can provide an energetic benefit to polar bear populations, especially given the capacity of bird populations to redistribute in response to increasing predation pressure. In this study, we develop a spatially explicit agent-based model of the predator-prey relationship between polar bears and common eiders, a common and culturally important bird species for northern peoples. Our model is composed of two types of agents (polar bear agents and common eider hen agents) whose movements and decision heuristics are based on species-specific bioenergetic and behavioral ecological principles, and are influenced by historical and extrapolated sea ice conditions. Our model reproduces empirical findings that polar bear predation of bird nests is increasing and predicts an accelerating relationship between advancing ice breakup dates and the number of nests depredated. Despite increases in nest predation, our model predicts that polar bear body condition during the ice-free period will continue to decline. Finally, our model predicts that common eider nests will become more dispersed and will move closer to the mainland in response to increasing predation, possibly increasing their exposure to land-based predators and influencing the livelihood of local people that collect eider eggs and down. These results show that predator-prey interactions can have nonlinear responses to changes in climate and provides important predictions of ecological change in Arctic ecosystems. © 2016 John Wiley & Sons Ltd.

Simultaneous detection of Plasmodium vivax and Plasmodium falciparum gametocytes in clinical isolates by multiplex-nested RT-PCR

PubMed Central

2012-01-01

Background Gametocyte carriage is essential for malaria transmission and endemicity of disease; thereby it is a target for malaria control strategies. Malaria-infected individuals may harbour gametocytes below the microscopic detection threshold that can be detected by reverse transcription polymerase chain reaction (RT-PCR) targeting gametocyte-specific mRNA. To date, RT-PCR has mainly been applied to the diagnosis of Plasmodium falciparum gametocytes but very limited for that of Plasmodium vivax. Methods A multiplex-nested RT-PCR targeting Pfs25 and Pvs25 mRNA specific to mature gametocytes of P. falciparum and P. vivax, respectively, was developed. The assay was evaluated using blood samples collected in rainy and dry seasons from febrile patients,in a malaria-endemic area in Thailand. Malaria diagnosis was performed by Giemsa-stained blood smears and 18S rRNA PCR. Results The multiplex-nested RT-PCR detected Pfs25 mRNA in 75 of 86 (87.2%) P. falciparum-infected individuals and Pvs25 mRNA in 82 of 90 (91.1%) P. vivax malaria patients diagnosed by 18S rRNA PCR. Gametocytes were detected in 38 (eight P. falciparum and 30 P. vivax) of 157 microscopy positive samples, implying that a large number of patients harbour sub-microscopic gametocytaemia. No seasonal differences in gametocyte carriage were observed for both malaria species diagnosed by multiplex-nested RT-PCR. With single-nested RT-PCR targeting Pfs25 or Pvs25 mRNA as standard, the multiplex-nested RT-PCR offered sensitivities of 97.4% and 98.9% and specificities of 100% and 98.8% for diagnosing mature gametocytes of P. falciparum and P. vivax, respectively. The minimum detection limit of the multiplex-nested PCR was 10 copies of templates. Conclusions The multiplex-nested RT-PCR developed herein is useful for simultaneous assessment of both P. falciparum and P. vivax gametocyte carriage that is prevalent and generally sympatric in several malaria-endemic areas outside Africa. PMID:22682065

Simultaneous detection of Plasmodium vivax and Plasmodium falciparum gametocytes in clinical isolates by multiplex-nested RT-PCR.

PubMed

Kuamsab, Napaporn; Putaporntip, Chaturong; Pattanawong, Urassaya; Jongwutiwes, Somchai

2012-06-10

Gametocyte carriage is essential for malaria transmission and endemicity of disease; thereby it is a target for malaria control strategies. Malaria-infected individuals may harbour gametocytes below the microscopic detection threshold that can be detected by reverse transcription polymerase chain reaction (RT-PCR) targeting gametocyte-specific mRNA. To date, RT-PCR has mainly been applied to the diagnosis of Plasmodium falciparum gametocytes but very limited for that of Plasmodium vivax. A multiplex-nested RT-PCR targeting Pfs25 and Pvs25 mRNA specific to mature gametocytes of P. falciparum and P. vivax, respectively, was developed. The assay was evaluated using blood samples collected in rainy and dry seasons from febrile patients,in a malaria-endemic area in Thailand. Malaria diagnosis was performed by Giemsa-stained blood smears and 18S rRNA PCR. The multiplex-nested RT-PCR detected Pfs25 mRNA in 75 of 86 (87.2%) P. falciparum-infected individuals and Pvs25 mRNA in 82 of 90 (91.1%) P. vivax malaria patients diagnosed by 18S rRNA PCR. Gametocytes were detected in 38 (eight P. falciparum and 30 P. vivax) of 157 microscopy positive samples, implying that a large number of patients harbour sub-microscopic gametocytaemia. No seasonal differences in gametocyte carriage were observed for both malaria species diagnosed by multiplex-nested RT-PCR. With single-nested RT-PCR targeting Pfs25 or Pvs25 mRNA as standard, the multiplex-nested RT-PCR offered sensitivities of 97.4% and 98.9% and specificities of 100% and 98.8% for diagnosing mature gametocytes of P. falciparum and P. vivax, respectively. The minimum detection limit of the multiplex-nested PCR was 10 copies of templates. The multiplex-nested RT-PCR developed herein is useful for simultaneous assessment of both P. falciparum and P. vivax gametocyte carriage that is prevalent and generally sympatric in several malaria-endemic areas outside Africa.

Social waves in giant honeybees (Apis dorsata) elicit nest vibrations.

PubMed

Kastberger, Gerald; Weihmann, Frank; Hoetzl, Thomas

2013-07-01

Giant honeybees (Apis dorsata) nest in the open and have developed a wide array of strategies for colony defence, including the Mexican wave-like shimmering behaviour. In this collective response, the colony members perform upward flipping of their abdomens in coordinated cascades across the nest surface. The time-space properties of these emergent waves are response patterns which have become of adaptive significance for repelling enemies in the visual domain. We report for the first time that the mechanical impulse patterns provoked by these social waves and measured by laser Doppler vibrometry generate vibrations at the central comb of the nest at the basic (='natural') frequency of 2.156 ± 0.042 Hz which is more than double the average repetition rate of the driving shimmering waves. Analysis of the Fourier spectra of the comb vibrations under quiescence and arousal conditions provoked by mass flight activity and shimmering waves gives rise to the proposal of two possible models for the compound physical system of the bee nest: According to the elastic oscillatory plate model, the comb vibrations deliver supra-threshold cues preferentially to those colony members positioned close to the comb. The mechanical pendulum model predicts that the comb vibrations are sensed by the members of the bee curtain in general, enabling mechanoreceptive signalling across the nest, also through the comb itself. The findings show that weak and stochastic forces, such as general quiescence or diffuse mass flight activity, cause a harmonic frequency spectrum of the comb, driving the comb as an elastic plate. However, shimmering waves provide sufficiently strong forces to move the nest as a mechanical pendulum. This vibratory behaviour may support the colony-intrinsic information hypothesis herein that the mechanical vibrations of the comb provoked by shimmering do have the potential to facilitate immediate communication of the momentary defensive state of the honeybee nest to the majority of its members.

Social waves in giant honeybees ( Apis dorsata) elicit nest vibrations

NASA Astrophysics Data System (ADS)

Kastberger, Gerald; Weihmann, Frank; Hoetzl, Thomas

2013-07-01

Giant honeybees ( Apis dorsata) nest in the open and have developed a wide array of strategies for colony defence, including the Mexican wave-like shimmering behaviour. In this collective response, the colony members perform upward flipping of their abdomens in coordinated cascades across the nest surface. The time-space properties of these emergent waves are response patterns which have become of adaptive significance for repelling enemies in the visual domain. We report for the first time that the mechanical impulse patterns provoked by these social waves and measured by laser Doppler vibrometry generate vibrations at the central comb of the nest at the basic (=`natural') frequency of 2.156 ± 0.042 Hz which is more than double the average repetition rate of the driving shimmering waves. Analysis of the Fourier spectra of the comb vibrations under quiescence and arousal conditions provoked by mass flight activity and shimmering waves gives rise to the proposal of two possible models for the compound physical system of the bee nest: According to the elastic oscillatory plate model, the comb vibrations deliver supra-threshold cues preferentially to those colony members positioned close to the comb. The mechanical pendulum model predicts that the comb vibrations are sensed by the members of the bee curtain in general, enabling mechanoreceptive signalling across the nest, also through the comb itself. The findings show that weak and stochastic forces, such as general quiescence or diffuse mass flight activity, cause a harmonic frequency spectrum of the comb, driving the comb as an elastic plate. However, shimmering waves provide sufficiently strong forces to move the nest as a mechanical pendulum. This vibratory behaviour may support the colony-intrinsic information hypothesis herein that the mechanical vibrations of the comb provoked by shimmering do have the potential to facilitate immediate communication of the momentary defensive state of the honeybee nest to the majority of its members.

Desert ants achieve reliable recruitment across noisy interactions

PubMed Central

Razin, Nitzan; Eckmann, Jean-Pierre; Feinerman, Ofer

2013-01-01

We study how desert ants, Cataglyphis niger, a species that lacks pheromone-based recruitment mechanisms, inform each other about the presence of food. Our results are based on automated tracking that allows us to collect a large database of ant trajectories and interactions. We find that interactions affect an ant's speed within the nest. Fast ants tend to slow down, whereas slow ones increase their speed when encountering a faster ant. Faster ants tend to exit the nest more frequently than slower ones. So, if an ant gains enough speed through encounters with others, then she tends to leave the nest and look for food. On the other hand, we find that the probability for her to leave the nest depends only on her speed, but not on whether she had recently interacted with a recruiter that has found the food. This suggests a recruitment system in which ants communicate their state by very simple interactions. Based on this assumption, we estimate the information-theoretical channel capacity of the ants’ pairwise interactions. We find that the response to the speed of an interacting nest-mate is very noisy. The question is then how random interactions with ants within the nest can be distinguished from those interactions with a recruiter who has found food. Our measurements and model suggest that this distinction does not depend on reliable communication but on behavioural differences between ants that have found the food and those that have not. Recruiters retain high speeds throughout the experiment, regardless of the ants they interact with; non-recruiters communicate with a limited number of nest-mates and adjust their speed following these interactions. These simple rules lead to the formation of a bistable switch on the level of the group that allows the distinction between recruitment and random noise in the nest. A consequence of the mechanism we propose is a negative effect of ant density on exit rates and recruitment success. This is, indeed, confirmed by our measurements. PMID:23486172

The View from the Trees: Nocturnal Bull Ants, Myrmecia midas, Use the Surrounding Panorama While Descending from Trees

PubMed Central

Freas, Cody A.; Wystrach, Antione; Narendra, Ajay; Cheng, Ken

2018-01-01

Solitary foraging ants commonly use visual cues from their environment for navigation. Foragers are known to store visual scenes from the surrounding panorama for later guidance to known resources and to return successfully back to the nest. Several ant species travel not only on the ground, but also climb trees to locate resources. The navigational information that guides animals back home during their descent, while their body is perpendicular to the ground, is largely unknown. Here, we investigate in a nocturnal ant, Myrmecia midas, whether foragers travelling down a tree use visual information to return home. These ants establish nests at the base of a tree on which they forage and in addition, they also forage on nearby trees. We collected foragers and placed them on the trunk of the nest tree or a foraging tree in multiple compass directions. Regardless of the displacement location, upon release ants immediately moved to the side of the trunk facing the nest during their descent. When ants were released on non-foraging trees near the nest, displaced foragers again travelled around the tree to the side facing the nest. All the displaced foragers reached the correct side of the tree well before reaching the ground. However, when the terrestrial cues around the tree were blocked, foragers were unable to orient correctly, suggesting that the surrounding panorama is critical to successful orientation on the tree. Through analysis of panoramic pictures, we show that views acquired at the base of the foraging tree nest can provide reliable nest-ward orientation up to 1.75 m above the ground. We discuss, how animals descending from trees compare their current scene to a memorised scene and report on the similarities in visually guided behaviour while navigating on the ground and descending from trees. PMID:29422880

The View from the Trees: Nocturnal Bull Ants, Myrmecia midas, Use the Surrounding Panorama While Descending from Trees.

PubMed

Freas, Cody A; Wystrach, Antione; Narendra, Ajay; Cheng, Ken

2018-01-01

Solitary foraging ants commonly use visual cues from their environment for navigation. Foragers are known to store visual scenes from the surrounding panorama for later guidance to known resources and to return successfully back to the nest. Several ant species travel not only on the ground, but also climb trees to locate resources. The navigational information that guides animals back home during their descent, while their body is perpendicular to the ground, is largely unknown. Here, we investigate in a nocturnal ant, Myrmecia midas , whether foragers travelling down a tree use visual information to return home. These ants establish nests at the base of a tree on which they forage and in addition, they also forage on nearby trees. We collected foragers and placed them on the trunk of the nest tree or a foraging tree in multiple compass directions. Regardless of the displacement location, upon release ants immediately moved to the side of the trunk facing the nest during their descent. When ants were released on non-foraging trees near the nest, displaced foragers again travelled around the tree to the side facing the nest. All the displaced foragers reached the correct side of the tree well before reaching the ground. However, when the terrestrial cues around the tree were blocked, foragers were unable to orient correctly, suggesting that the surrounding panorama is critical to successful orientation on the tree. Through analysis of panoramic pictures, we show that views acquired at the base of the foraging tree nest can provide reliable nest-ward orientation up to 1.75 m above the ground. We discuss, how animals descending from trees compare their current scene to a memorised scene and report on the similarities in visually guided behaviour while navigating on the ground and descending from trees.

Managing individual nests promotes population recovery of a top predator

USGS Publications Warehouse

Cruz, Jennyffer; Windels, Steve K.; Thogmartin, Wayne E.; Crimmins, Shawn M.; Grim, Leland; Zuckerberg, Benjamin

2018-01-01

Threatened species are managed using diverse conservation tactics implemented at multiple scales ranging from protecting individuals, to populations, to entire species. Individual protection strives to promote recovery at the population‐ or species‐level, although this is seldom evaluated.After decades of widespread declines, bald eagles, Haliaeetus leucocephalus, are recovering throughout their range due to legal protection and pesticide bans. However, like other raptors, their recovery remains threatened by human activities. Bald eagle nests are commonly managed using buffer zones to minimize human disturbance, but the benefits of this practice remain unquantified.Within Voyageurs National Park (VNP), Minnesota, USA, managers have monitored bald eagle populations for over 40 years, and since 1991, have protected at‐risk nests from human disturbance using buffer zones (200 and 400 m radius). We aimed to (1) quantify the recovery of bald eagles in VNP (1973–2016), and (2) provide a first‐ever evaluation of the individual‐ and population‐level effects of managing individual nests. To do so, we developed Bayesian Integrated Population Models combining observations of nest occupancy and reproductive output (metrics commonly collected for raptors) to estimate nest‐level probabilities of occupancy, nest success, and high productivity (producing ≥2 nestlings), as well as population‐level estimates of abundance and growth.The breeding population of bald eagles at VNP increased steadily from <10 pairs in the late 1970s to 48 pairs by 2016. At the nest‐level, management significantly improved occupancy and success. At the population‐level, management led to 8% and 13% increases in nest success and productivity rates, respectively, resulting in a 37% increase in breeding pair abundance.Synthesis and applications. There is a clear need to evaluate how management approaches at multiple scales assist in species recovery. Our study uses an Integrated Population Model to reveal the population‐level benefits of a widely used, individual‐based management action (protecting nests using buffer zones) on a recovering raptor.

Water column and bed-sediment core samples collected from Brownlee Reservoir near Oxbow, Oregon, 2012

USGS Publications Warehouse

Fosness, Ryan L.; Naymik, Jesse; Hopkins, Candice B.; DeWild, John F.

2013-01-01

The U.S. Geological Survey, in cooperation with Idaho Power Company, collected water-column and bed-sediment core samples from eight sites in Brownlee Reservoir near Oxbow, Oregon, during May 5–7, 2012. Water-column and bed-sediment core samples were collected at each of the eight sites and analyzed for total mercury and methylmercury. Additional bed-sediment core samples, collected from three of the eight sites, were analyzed for pesticides and other organic compounds, trace metals, and physical characteristics, such as particle size. Total mercury and methylmercury were detected in each of the water column and bed-sediment core samples. Only 17 of the 417 unique pesticide and organic compounds were detected in bed-sediment core samples. Concentrations of most organic wastewater compounds detected in bed sediment were less than the reporting level. Trace metals detected were greater than the reporting level in all the bed-sediment core samples submitted for analysis. The particle size distribution of bed-sediment core samples was predominantly clay mixed with silt.

Grassland bird responses to land management in the largest remaining tallgrass prairie.

PubMed

Rahmig, Corina J; Jensen, William E; With, Kimberly A

2009-04-01

Extensive habitat loss and changing agricultural practices have caused widespread declines in grassland birds throughout North America. The Flint Hills of Kansas and Oklahoma--the largest remaining tallgrass prairie--is important for grassland bird conservation despite supporting a major cattle industry. In 2004 and 2005, we assessed the community, population, and demographic responses of grassland birds to the predominant management practices (grazing, burning, and haying) of the region, including grasslands restored under the Conservation Reserve Program (CRP). We targeted 3 species at the core of this avian community: the Dickcissel (Spiza americana), Grasshopper Sparrow (Ammodramus savannarum), and Eastern Meadowlark (Sturnella magna). Bird diversity was higher in native prairie hayfields and grazed pastures than CRP fields, which were dominated by Dickcissels. Although Dickcissel density was highest in CRP, their nest success was highest and nest parasitism by Brown-headed Cowbirds (Moluthrus ater) lowest in unburned hayfields (in 2004). Conversely, Grasshopper Sparrow density was highest in grazed pastures, but their nest success was lowest in these pastures and highest in burned hayfields, where cowbird parasitism was also lowest (in 2004). Management did not influence density and nest survival of Eastern Meadowlarks, which were uniformly low across the region. Nest success was extremely low (5-12%) for all 3 species in 2005, perhaps because of a record spring drought. Although the CRP has benefited grassland birds in agricultural landscapes, these areas may have lower habitat value in the context of native prairie. Hayfields may provide beneficial habitat for some grassland birds in the Flint Hills because they are mowed later in the breeding season than elsewhere in the Midwest. Widespread grazing and annual burning have homogenized habitat-and thus grassland-bird responses-across the Flint Hills. Diversification of management practices could increase habitat heterogeneity and enhance the conservation potential of the Flint Hills for grassland birds.

Rapid plant diversity assessment using a pixel nested plot design: A case study in Beaver Meadows, Rocky Mountain National Park, Colorado, USA

USGS Publications Warehouse

Kalkhan, M.A.; Stafford, E.J.; Stohlgren, T.J.

2007-01-01

Geospatial statistical modelling and thematic maps have recently emerged as effective tools for the management of natural areas at the landscape scale. Traditional methods for the collection of field data pertaining to questions of landscape were developed without consideration for the parameters of these applications. We introduce an alternative field sampling design based on smaller unbiased random plot and subplot locations called the pixel nested plot (PNP). We demonstrate the applicability of the PNP design of 15 m x 15 m to assess patterns of plant diversity and species richness across the landscape at Rocky Mountain National Park (RMNP), Colorado, USA in a time (cost)-efficient manner for field data collection. Our results produced comparable results to a previous study in the Beaver Meadow study (BMS) area within RMNP, where there was a demonstrated focus of plant diversity. Our study used the smaller PNP sampling design for field data collection which could be linked to geospatial information data and could be used for landscape-scale analyses and assessment applications. In 2003, we established 61 PNP in the eastern region of RMNP. We present a comparison between this approach using a sub-sample of 19 PNP from this data set and 20 of Modified Whittaker nested plots (MWNP) of 20 m x 50 m that were collected in the BMS area. The PNP captured 266 unique plant species while the MWNP captured 275 unique species. Based on a comparison of PNP and MWNP in the Beaver Meadows area, RMNP, the PNP required less time and area sampled to achieve a similar number of species sampled. Using the PNP approach for data collection can facilitate the ecological monitoring of these vulnerable areas at the landscape scale in a time- and therefore cost-effective manner. ?? 2007 The Authors.

Selenium and metal concentrations in waterbird eggs and chicks at Agassiz National Wildlife Refuge, Minnesota

USGS Publications Warehouse

Custer, T.W.; Custer, Christine M.; Eichhorst, B.A.; Warburton, D.

2007-01-01

Exceptionally high cadmium (Cd) and chromium (Cr) concentrations were reported in eggs, feathers, or livers of selected waterbird species nesting at Agassiz National Wildlife Refuge (Agassiz) in 1994. Ten- to 15-day-old Franklin's gull (Larus pipixcan), black-crowned night-heron (Nycticorax nycticorax), and eared grebe (Podiceps nigricollis) chicks were collected in 1998, 1999, and 2001 at Agassiz and analyzed for selenium (Se) and metals including Cd and Cr. Freshly laid eggs were collected in 2001 from Franklin's gull, black-crowned night-heron, eared grebe, and pied-billed grebe (Podilymbus podiceps) nests at Agassiz. Based on a multivariate analysis, the pattern of Se and metal concentrations differed among species for eggs, chick feathers, and chick livers. Low Cd and Cr concentrations were measured in eggs, chick livers, and chick feathers of all four species. Mercury concentrations in black-crowned night-heron and eared grebe eggs collected from Agassiz in 2001 were lower than concentrations reported in 1994. Se and metal concentrations, including Cd and Cr, in waterbird eggs and chicks collected at Agassiz in 1998, 1999, and 2001 were not at toxic levels. ?? 2007 Springer Science+Business Media, LLC.

Trypanosoma cruzi infection in Didelphis marsupialis in Santa Catarina and Arvoredo Islands, southern Brazil.

PubMed

Grisard, E C; Carvalho-Pinto, C J; Scholz, A F; Toma, H K; Schlemper, B R; Steindel, M

2000-01-01

Between 1984 and 1993 the prevalence of the Trypanosoma cruzi infection in opossums (Didelphis marsupialis) was studied in Santa Catarina and Arvoredo Islands, State of Santa Catarina, Brazil. The association of the triatomine bug Panstrongylus megistus with opossums nests and the infection rate of these triatomines by T. cruzi was also studied. Thirteen different locations were studied in Santa Catarina Island (SCI), in which 137 D. marsupialis were collected. Sixty two opossums were collected at the Arvoredo Island (AI), located 12 miles north from SCI. All captured animals were submitted to parasitological examinations that revealed the presence of T. cruzi in 21.9% of the opossums captured in SCI and 45.2% among opossums captured in the AI. The presence of P. megistus was detected in most of the D. marsupialis nests collected in the SCI, however, in the non-inhabited AI only eight triatomines were collected during the whole study. The presence of T. cruzi-infected D. marsupialis associated with P. megistus in human dwellings in the SCI, and the high infection rate of D. marsupilais by T. cruzi in the absence of a high vector density are discussed.

Raptor ecology of Raft River Valley, Idaho

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thurow, T.L.; White, C.M.; Howard, R.P.

1980-09-01

Raptor data were gathered in the 988-km/sup 2/ Raft River Valley in southcentral Idaho while conducting a tolerance study on the nesting Ferruginous Hawk (Buteo regalis) near the Department of Energy's Raft River Geothermal Site. Prior research from 1972 to 1977 on the nesting activity of the Ferruginous Hawk population provided a historical information base. These data are combined with new Ferruginous Hawk data collected between 1978 and 1980 to give a continuous 9-year breeding survey. Information on the distribution, density, and production of the other raptor species found in the study area during 1978 and 1979 is also provided.

The European wool-carder bee (Anthidium manicatum) eavesdrops on plant volatile organic compounds (VOCs) during trichome collection.

PubMed

Graham, Kelsey K; Brown, Steve; Clarke, Stephanie; Röse, Ursula S R; Starks, Philip T

2017-11-01

The plant-pollinator relationship is generally considered mutualistic. This relationship is less clear, however, when pollinators also cause tissue damage. Some Megachilidae bees collect plant material for nests from the plants they pollinate. In this study, we examined the relationship between Anthidium manicatum, the European wool-carder bee, and the source of its preferred nesting material - Stachys byzantina, lamb's ear. Female A. manicatum use their mandibles to trim trichomes from plants for nesting material (a behaviour dubbed "carding"). Using volatile organic compound (VOC) headspace analysis and behavioural observations, we explored (a) how carding effects S. byzantina and (b) how A. manicatum may choose specific S. byzantina plants. We found that removal of trichomes leads to a dissimilar VOC bouquet compared to intact leaves, with a significant increase in VOC detection following damage. A. manicatum also visit S. byzantina plants with trichomes removed at a greater frequency compared to plants with trichomes intact. Our data suggest that A. manicatum eavesdrop on VOCs produced by damaged plants, leading to more carding damage for individual plants due to increased detectability by A. manicatum. Accordingly, visitation by A. manicatum to S. byzantina may incur both a benefit (pollination) and cost (tissue damage) to the plant. Copyright © 2017 Elsevier B.V. All rights reserved.

Diversity captured in the USDA-ARS National Plant Germplasm System apple core collection

USDA-ARS?s Scientific Manuscript database

Core collections have been used widely in genetic resources to provide a representative and compact sample to use in breeding evaluation. In the 1990s a core set was developed by the USDA-ARS Plant Genetic Resources Unit (PGRU) in Geneva, NY. Using data available at the time, a core set was develo...

Independence and interdependence in collective decision making: an agent-based model of nest-site choice by honeybee swarms

PubMed Central

List, Christian; Elsholtz, Christian; Seeley, Thomas D.

2008-01-01

Condorcet's jury theorem shows that when the members of a group have noisy but independent information about what is best for the group as a whole, majority decisions tend to outperform dictatorial ones. When voting is supplemented by communication, however, the resulting interdependencies between decision makers can strengthen or undermine this effect: they can facilitate information pooling, but also amplify errors. We consider an intriguing non-human case of independent information pooling combined with communication: the case of nest-site choice by honeybee (Apis mellifera) swarms. It is empirically well documented that when there are different nest sites that vary in quality, the bees usually choose the best one. We develop a new agent-based model of the bees' decision process and show that its remarkable reliability stems from a particular interplay of independence and interdependence between the bees. PMID:19073474

Myrmecophagy by Yellowstone grizzly bears

USGS Publications Warehouse

Mattson, D.J.

2001-01-01

I used data collected during a study of radio-marked grizzly bears (Ursus arctos horribilis) in the Yellowstone region from 1977 to 1992 to investigate myrmecophagy by this population. Although generally not an important source of energy for the bears (averaging 8 mm long) nested in logs over small ants (6 mm long) nested under stones. Optimal conditions for consumption of ants occurred on the warmest sites with ample substrate suitable for ant nests. For ants in mounds, this occurred at low elevations at non-forested sites. For ants in logs, this occurred at low elevations or on southerly aspects where there was abundant, large-diameter, well-decomposed woody debris under an open forest canopy. Grizzly bears selected moderately decomposed logs 4a??5 dm in diameter at midpoint. Ants will likely become a more important food for Yellowstone's grizzly bears as currently important foods decline, owing to disease and warming of the regional climate.

Core Hunter 3: flexible core subset selection.

PubMed

De Beukelaer, Herman; Davenport, Guy F; Fack, Veerle

2018-05-31

Core collections provide genebank curators and plant breeders a way to reduce size of their collections and populations, while minimizing impact on genetic diversity and allele frequency. Many methods have been proposed to generate core collections, often using distance metrics to quantify the similarity of two accessions, based on genetic marker data or phenotypic traits. Core Hunter is a multi-purpose core subset selection tool that uses local search algorithms to generate subsets relying on one or more metrics, including several distance metrics and allelic richness. In version 3 of Core Hunter (CH3) we have incorporated two new, improved methods for summarizing distances to quantify diversity or representativeness of the core collection. A comparison of CH3 and Core Hunter 2 (CH2) showed that these new metrics can be effectively optimized with less complex algorithms, as compared to those used in CH2. CH3 is more effective at maximizing the improved diversity metric than CH2, still ensures a high average and minimum distance, and is faster for large datasets. Using CH3, a simple stochastic hill-climber is able to find highly diverse core collections, and the more advanced parallel tempering algorithm further increases the quality of the core and further reduces variability across independent samples. We also evaluate the ability of CH3 to simultaneously maximize diversity, and either representativeness or allelic richness, and compare the results with those of the GDOpt and SimEli methods. CH3 can sample equally representative cores as GDOpt, which was specifically designed for this purpose, and is able to construct cores that are simultaneously more diverse, and either are more representative or have higher allelic richness, than those obtained by SimEli. In version 3, Core Hunter has been updated to include two new core subset selection metrics that construct cores for representativeness or diversity, with improved performance. It combines and outperforms the strengths of other methods, as it (simultaneously) optimizes a variety of metrics. In addition, CH3 is an improvement over CH2, with the option to use genetic marker data or phenotypic traits, or both, and improved speed. Core Hunter 3 is freely available on http://www.corehunter.org .

Populations of trap-nesting wasps near a major source of fluoride emissions in western Tennessee

USGS Publications Warehouse

Beyer, W.N.; Miller, G.W.; Fleming, W.J.

1987-01-01

Trap-nesting wasps were collected from eight sites at distances of from 1.2-33.0 km from an aluminum reduction plant in western Tennessee. The sites had similar topographies, soils, and vegetation, but differed in their exposure to fluoride, which was emitted in large quantities from the plant. It was postulated that if fluoride emissions had greatly changed the insect community then relative densities of their predators would have varied accordingly. However, the degree of fluoride pollution was unrelated to the relative densities of the wasps and to the number of cells provisioned with prey. Monobia quadridens, Trypargilum clavatum, and T. lactitarse were found to have two complete generations in western Tennessee. Trypargilum collinum rubrocinctum has at least two generations, and Euodynerus megaera probably has three generations. Six other wasp species and a megachilid bee were also collected.

Brain cholinesterase activity of nestling great egrets, snowy egrets, and black-crowned night-herons

USGS Publications Warehouse

Custer, T.W.; Ohlendorf, H.M.

1989-01-01

Inhibition of brain cholinesterase (ChE) activity in birds is often used to diagnose exposure or death from organophosphorus or carbmate pesticides. Brain ChE activity in the young of altricial species increase with age; however, this relationship has only been demonstrated in the European starling (Sturnus vulgaris). Brain ChE activity of nestling great egrets (Casmerodius albus) collected from a colony in Texas increased significantly with age and did not differ among individuals from different nests. Brain ChE activity of nestling snowy egrets (Egretta thula) and black-crowned night -herons (Nycticorax nycticorax) collected in one colony each from Rhode Island, Texas, and California also increased significantly with age and did not differ among individuals from different nests or colonies. This study further demonstrates that age must be considered when evaluating exposure of nestling altricial birds to ChE inhibitors.

Brain cholinesterase activity of nestling great egrets snowy egrets and black-crowned night-herons

USGS Publications Warehouse

Custer, T.W.; Ohlendorf, H.M.

1989-01-01

Inhibition of brain cholinesterase (ChE) activity in birds is often used to diagnose exposure or death from organophosphorus or carbamate pesticides. Brain ChE activity in the young of altricial species increases with age; however, this relationship has only been demonstrated in the European starling (Sturnus vulgaris). Brain ChE activity of nestling great egrets (Casmerodius albus) collected from a colony in Texas (USA) increased significantly with age and did not differ among individuals from different nests. Brain ChE activity of nestling snowy egrets (Egretta thula) and black-crowned night-herons (Nycticorax nycticorax) collected in one colony each from Rhode Island, Texas and California (USA) also increased significantly with age and did not differ among individuals from different nests or colonies. This study further demonstrates that age must be considered when evaluating exposure of nestling altricial birds to ChE inhibitors.

Application of multiplex nested methylated specific PCR in early diagnosis of epithelial ovarian cancer.

PubMed

Wang, Bi; Yu, Lei; Yang, Guo-Zhen; Luo, Xin; Huang, Lin

2015-01-01

To explore the application of multiplex nested methylated specific polymerase chain reaction (PCR) in the early diagnosis of epithelial ovarian carcinoma (EOC). Serum and fresh tissue samples were collected from 114 EOC patients. RUNX3, TFPI2 and OPCML served as target genes. Methylation levels of tissues were assessed by multiplex nested methylated specific PCR, the results being compared with those for carcinoma antigen 125 (CA125). The serum free deoxyribose nucleic acid (DNA) methylation spectrum of EOC patients was completely contained in the DNA spectrum of cancer tissues, providing an accurate reflection of tumor DNA methylation conditions. Serum levels of CA125 and free DNA methylation in the EOC group were evidently higher than those in benign lesion and control groups (p<0.05). Patients with early EOC had markedly lower serum CA125 than those with advanced EOC (p<0.05), but there was no significant difference in free DNA methylation (p>0.05). The sensitivity, specificity and positive predicative value (PPV) of multiplex nested methylated specific PCR were significantly higher for detection of all patients and those with early EOC than those for CA125 (p<0.05). In the detection of patients with advanced EOC, the PPV of CA125 detection was obviously lower than that of multiplex nested methylated specific PCR (p>0.05), but there was no significant difference in sensitivity (p>0.05). Serum free DNA methylation can be used as a biological marker for EOC and multiplex nested methylated specific PCR should be considered for early diagnosis since it can accurately determine tumor methylation conditions.

Application of video recording technology to improve husbandry and reproduction in the carmine bee-eater (Merops n. nubicus).

PubMed

Ferrie, Gina M; Sky, Christy; Schutz, Paul J; Quinones, Glorieli; Breeding, Shawnlei; Plasse, Chelle; Leighty, Katherine A; Bettinger, Tammie L

2016-01-01

Incorporating technology with research is becoming increasingly important to enhance animal welfare in zoological settings. Video technology is used in the management of avian populations to facilitate efficient information collection on aspects of avian reproduction that are impractical or impossible to obtain through direct observation. Disney's Animal Kingdom(®) maintains a successful breeding colony of Northern carmine bee-eaters. This African species is a cavity nester, making their nesting behavior difficult to study and manage in an ex situ setting. After initial research focused on developing a suitable nesting environment, our goal was to continue developing methods to improve reproductive success and increase likelihood of chicks fledging. We installed infrared bullet cameras in five nest boxes and connected them to a digital video recording system, with data recorded continuously through the breeding season. We then scored and summarized nesting behaviors. Using remote video methods of observation provided much insight into the behavior of the birds in the colony's nest boxes. We observed aggression between birds during the egg-laying period, and therefore immediately removed all of the eggs for artificial incubation which completely eliminated egg breakage. We also used observations of adult feeding behavior to refine chick hand-rearing diet and practices. Although many video recording configurations have been summarized and evaluated in various reviews, we found success with the digital video recorder and infrared cameras described here. Applying emerging technologies to cavity nesting avian species is a necessary addition to improving management in and sustainability of zoo avian populations. © 2015 Wiley Periodicals, Inc.

Fish tag recovery from Anaho Island nesting colony, Pyramid Lake, Nevada

USGS Publications Warehouse

Scoppettone, G. Gary; Fabes, Mark C.; Rissler, Peter H.; Withers, Donna

2016-01-06

In 2001, tags applied to the federally endangered species cui-ui (Chasmistes cujus) to study their population dynamics were discovered strewn throughout the American White Pelican (Pelecanus erythrorhynchos) nesting colony on Anaho Island, Pyramid Lake, Nevada. Cui-ui are endemic to Pyramid Lake, and Anaho Island harbors one of North America’s largest nesting colonies of American White Pelican. Cui-ui are consumed by pelicans during the fish’s spring migration into the Truckee River to reproduce. The predatory success of pelican has been validated by determining the odds of finding a tag from a predated cui-ui within the Anaho Island nesting colony. It is unknown how many cui-ui tags are eliminated by birds before arrival to the colony versus how many are brought to the colony but never recovered. The focus of this study was to improve the estimate of the chances of collecting a tag from a predated adult cui-ui in the pelican nesting colony by feeding dead tagged Lahontan cutthroat trout (Oncorhynchus clarkii henshawi) and common carp (Cyprinus carpio) to pelican and subsequently searching for these tags within the colony. We also randomly deployed 1,000 dispersal tags throughout the nesting colony, searching for these after one and two breeding seasons. After adding 1,027 fed fish to 547 previously fed fish, we estimated 5.3 percent of the tagged cui-ui taken by pelican were recovered during tag searches. A study of dispersal tags randomly deployed within the pelican nesting colony showed that 51.5 percent would be expected to be recovered after at least one breeding season after being deployed. Results of our studies indicate that more than 90 percent of tags from adult cui-ui are eliminated by birds outside the pelican nesting colony. Tags recovered from other species and the site at which they were tagged are also reported. Most notable were recovered Lahontan cutthroat trout tags, which were the highest in number, but their proximity to double-crested cormorant (Phalacrocorax auritus) nests suggests this species to be the primary predator. Tags from other species of fish came from as far as the Columbia River, Washington (about 600 kilometers). This study provides an important baseline for future tag recovery from the pelican nesting colony on Anaho Island and opens new questions to American White Pelican movement patterns.

Brain and gonadal aromatase activity and steroid hormone levels in female and polymorphic males of the peacock blenny Salaria pavo.

PubMed

Gonçalves, David; Teles, Magda; Alpedrinha, João; Oliveira, Rui F

2008-11-01

In the peacock blenny Salaria pavo large males with well-developed secondary sexual characters establish nests and attract females while small "sneaker" males mimic female sexual displays in order to approach the nests of larger males and parasitically fertilize eggs. These alternative reproductive tactics are sequential, as sneakers irreversibly switch into nesting males. This transition involves major morphologic and behavioral changes and is likely to be mediated by hormones. This study focuses on the role of aromatase, an enzyme that catalyses the conversion of androgens into estrogens, in the regulation of male sexual polymorphism in S. pavo. For this, sex steroid plasma levels and aromatase activity (AA) in gonads, whole brain and brain macroareas were determined in sneakers, transitional males (i.e. sneakers undergoing the transition into nesting males), nesting males and females collected in the field. AA was much higher in ovarian tissue than in testicular tissue and accordingly circulating estradiol levels were highest in females. This supports the view that elevated AA and estradiol levels are associated with the development of a functional ovary. Transitional males are in a non-reproductive phase and had underdeveloped testes when compared with sneakers and nesting males. Testicular AA was approximately 10 times higher in transitional males when compared with sneakers and nesting males, suggesting high AA has a suppressive effect on testicular development. Nesting males had significantly higher plasma levels of both testosterone (T) and 11-ketotestosterone when compared with the other male morphs and previous studies demonstrated that these androgens suppress female-like displays in sneakers. In the brain, AA was highest in macroareas presumably containing hypothalamic nuclei traditionally associated with the regulation of reproductive behaviors. Overall, females presented the highest levels of brain AA. In male morphs AA increased from sneakers, to transitional males, to nesting males in all brain macroareas. These results suggest that the transition into the nesting male tactic is accompanied both by an increase in testicular androgen production and by a higher conversion of androgens into estrogens in the brain. The increase in androgen production is likely to mediate the development of male secondary sexual characters while the increase in brain AA may be related to the behavioral changes associated with tactic transition.

Changes in productivity and contaminants in bald eagles nesting along the lower Columbia River, USA

USGS Publications Warehouse

Buck, J.A.; Anthony, R.G.; Schuler, C.A.; Isaacs, F.B.; Tillitt, D.E.

2005-01-01

Previous studies documented poor productivity of bald eagles (Haliaeetus leucocephalus) in the lower Columbia River (LCR), USA, and elevated p,p???-dichlorodiphenyldichloroethylene (DDE), polychlorinated biphenyls (PCBs), dioxins, and furans in eagle eggs. From 1994 to 1995, we collected partially incubated eggs at 19 of 43 occupied territories along the LCR and compared productivity and egg contaminants to values obtained in the mid-1980s. We found higher productivity at new nesting sites along the river, yet productivity at 23 older breeding territories remained low and was not different (p = 0.713) between studies. Eggshell thickness at older territories had not improved (p = 0.404), and eggshells averaged 11% thinner than shells measured before dichlorodiphenyltrichloroethane use. Decreases in DDE (p = 0.022) and total PCBs (p = 0.0004) in eggs from older breeding areas occurred between study periods. Productivity was not correlated to contaminants, but DDE, PCBs, and dioxin-like chemicals exceeded estimated no-effect values. Some dioxin-like contaminants in eggs were correlated to nest location, with highest concentrations occurring toward the river's mouth where productivity was lowest. Although total productivity increased due to the success of new nesting pairs in the region, egg contaminants remain high enough to impair reproduction at older territories and, over time, may alter productivity of new pairs nesting near the river's mouth. ?? 2005 SETAC.

Diet of yellow-billed loons (Gavia adamsii) in Arctic lakes during the nesting season inferred from fatty acid analysis

USGS Publications Warehouse

Haynes, T B; Schmutz, Joel A.; Bromaghin, Jeffrey F.; Iverson, S J; Padula, V. M.; Rosenberger, A E

2015-01-01

Understanding the dietary habits of yellow-billed loons (Gavia adamsii) can give important insights into their ecology, however, studying the diet of loons is difficult when direct observation or specimen collection is impractical. We investigate the diet of yellow-billed loons nesting on the Arctic Coastal Plain of Alaska using quantitative fatty acid signature analysis. Tissue analysis from 26 yellow-billed loons and eleven prey groups (nine fish species and two invertebrate groups) from Arctic lakes suggests that yellow-billed loons are eating high proportions of Alaska blackfish (Dallia pectoralis), broad whitefish (Coregonus nasus) and three-spined stickleback (Gasterosteus aculeatus) during late spring and early summer. The prominence of blackfish in diets highlights the widespread availability of blackfish during the early stages of loon nesting, soon after spring thaw. The high proportions of broad whitefish and three-spined stickleback may reflect a residual signal from the coastal staging period prior to establishing nesting territories on lakes, when loons are more likely to encounter these species. Our analyses were sensitive to the choice of calibration coefficient based on data from three different species, indicating the need for development of loon-specific coefficients for future study and confirmation of our results. Regardless, fish that are coastally distributed and that successfully overwinter in lakes are likely key food items for yellow-billed loons early in the nesting season.

Reproduction and microhabitat selection in a sharply declining Northern Bobwhite population

USGS Publications Warehouse

Collins, B.M.; Williams, C.K.; Castelli, Paul M.

2009-01-01

Northern Bobwhite (Colinus virginianus) populations have been declining throughout their range, but some of the sharpest declines have been documented in the Mid-Atlantic states. We conducted a 2 year (2006-2007) breeding season (1 May-30 Sep) telemetry study in southern New Jersey to collect baseline data on Northern Bobwhite reproductive rates, and nest and brood microhabitat selection. We located 23 Northern Bobwhite nests, of which 21 were usable for survival analyses. Incubation-period nest survival rate was 0.454 ?? 0.010 (95 CI =0.2800.727). Mean clutch size was 14.2 ?? 0.58 (range 10-19, n = 20) and hatching success was 96.1 ?? 2.0 (range 86-100%, n = 10). The estimated probability that an individual that entered the breeding season would initiate incubation of ???1 nest was 0.687 for females and 0.202 for males. Nest microhabitat selection was positively related to visual obstruction and percentage of litter. Brood microhabitat selection was positively related to visual obstruction, vegetation height, and percentage of forbs but negatively related to percentage of cool season grass and litter. Fecundity metrics for Northern Bobwhites in southern New Jersey appear similar to those reported elsewhere in the species' range. Conservation efforts to increase Northern Bobwhite reproductive success in southern New Jersey should focus on increasing the quantity of available breeding habitat. ?? 2009 by the Wilson Ornithological Society.

Body Size Correlates with Fertilization Success but not Gonad Size in Grass Goby Territorial Males

PubMed Central

Pujolar, Jose Martin; Locatello, Lisa; Zane, Lorenzo; Mazzoldi, Carlotta

2012-01-01

In fish species with alternative male mating tactics, sperm competition typically occurs when small males that are unsuccessful in direct contests steal fertilization opportunities from large dominant males. In the grass goby Zosterisessor ophiocephalus, large territorial males defend and court females from nest sites, while small sneaker males obtain matings by sneaking into nests. Parentage assignment of 688 eggs from 8 different nests sampled in the 2003–2004 breeding season revealed a high level of sperm competition. Fertilization success of territorial males was very high but in all nests sneakers also contributed to the progeny. In territorial males, fertilization success correlated positively with male body size. Gonadal investment was explored in a sample of 126 grass gobies collected during the period 1995–1996 in the same area (61 territorial males and 65 sneakers). Correlation between body weight and testis weight was positive and significant for sneaker males, while correlation was virtually equal to zero in territorial males. That body size in territorial males is correlated with fertilization success but not gonad size suggests that males allocate much more energy into growth and relatively little into sperm production once the needed size to become territorial is attained. The increased paternity of larger territorial males might be due to a more effective defense of the nest in comparison with smaller territorial males. PMID:23056415

Body size correlates with fertilization success but not gonad size in grass goby territorial males.

PubMed

Pujolar, Jose Martin; Locatello, Lisa; Zane, Lorenzo; Mazzoldi, Carlotta

2012-01-01

In fish species with alternative male mating tactics, sperm competition typically occurs when small males that are unsuccessful in direct contests steal fertilization opportunities from large dominant males. In the grass goby Zosterisessor ophiocephalus, large territorial males defend and court females from nest sites, while small sneaker males obtain matings by sneaking into nests. Parentage assignment of 688 eggs from 8 different nests sampled in the 2003-2004 breeding season revealed a high level of sperm competition. Fertilization success of territorial males was very high but in all nests sneakers also contributed to the progeny. In territorial males, fertilization success correlated positively with male body size. Gonadal investment was explored in a sample of 126 grass gobies collected during the period 1995-1996 in the same area (61 territorial males and 65 sneakers). Correlation between body weight and testis weight was positive and significant for sneaker males, while correlation was virtually equal to zero in territorial males. That body size in territorial males is correlated with fertilization success but not gonad size suggests that males allocate much more energy into growth and relatively little into sperm production once the needed size to become territorial is attained. The increased paternity of larger territorial males might be due to a more effective defense of the nest in comparison with smaller territorial males.

PCDDs, PCDFs, PCBs, OC pesticides and mercury in fish and osprey eggs from Willamette River, Oregon (1993, 2001 and 2006) with calculated biomagnification factors

USGS Publications Warehouse

Henny, C.J.; Kaiser, J.L.; Grove, R.A.

2009-01-01

The osprey (Pandion haliaetus) population nesting along the main stem Willamette River and lower Santiam River was first studied to evaluate contaminants and reproductive rates in 1993 when 78 occupied nests were present. By 2001, the population increased to 234 occupied nests, a 13.7% annual rate of population increase. A sample egg was collected from each of a series of nests along the Upper River (river mile 55-187) in 1993, 2001 and 2006 to evaluate trends of persistent contaminants (organochlorine [OC] pesticides, polychlorinated biphenyls [PCBs], polychlorinated dibenzo-p-dioxins [PCDDs], and polychlorinated dibenzofurans [PCDFs]). Nearly all OC pesticide residues decreased significantly, e.g., p, p?-DDE (DDE) from 2,350 to 1,353 to 210 ??g/kg wet weight (ww). PCBs followed a similar pattern over time, e.g., ???PCBs 688 to 245 to 182 ??g/kg ww, while PCDDs and PCDFs showed a more precipitous decline (often 85-95%) between 1993 and 2001, with no egg analyses warranted in 2006. During 2001-2002, sample osprey eggs were also collected from nests at three Headwater Reservoirs and two lower reaches (Newberg Pool and Tidal Portland) of the Willamette River, as well as the lower portion of the Santiam River to evaluate spatial residue patterns. Significant differences were seldom detected among the different sampling areas for OC pesticides (probably due to small sample sizes), although higher concentrations were often seen in the lower reaches, e.g., DDE 901 ??g/kg ww (Headwater Reservoirs), 1,353 (Upper River), 1,384 (Newberg Pool) and 2,676 (Tidal Portland). PCB congener concentrations in eggs were usually higher in the Tidal Portland reach than at other locations and often significantly higher than at the Headwater Reservoirs or Upper River. Mercury (first analyzed in eggs in 2001), PCDDs and PCDFs were extremely low in 2001/2002 with no significant spatial patterns. Whole fish composite samples of largescale sucker (Catastomus macrocheilus) and northern pikeminnow (Ptychocheilus oregonensis), which account for about 90% of the biomass in the diet of this osprey population, were also collected from the Willamette River in 1993 and 2001 and analyzed for the same contaminants as osprey eggs. Contaminant residues in fish from the Upper River decreased between 1993 and 2001, paralleling findings for osprey eggs. Likewise, spatial patterns for fish residues paralleled findings for osprey eggs from the different reaches in 2001. A second empirical estimate of biomagnification factors (BMFs) from fish to osprey eggs for OC pesticides, PCBs, PCDDs and PCDFs (ww and lipid weight [lw] basis) was calculated based on residue data collected in 2001. The two independent BMF estimates (1993 and 2001) for each contaminant from the Upper River provide a measure of consistency, e.g., DDE (ww) 87 and 79, (lw) 103 and 112; ???PCBs (ww) 11 and 8.4, (lw) 13 and 12. Mercury did not biomagnify from fish to osprey eggs (BMF = 0.60). Legacy contaminants investigated had limited (perhaps only DDE), if any, effects on reproductive success of the increasing osprey population nesting along the Willamette River by 2001. ?? 2008 U.S. Government.

Recovery and Lithologic Analysis of Sediment from Hole UT-GOM2-1-H002, Green Canyon 955, Northern Gulf of Mexico

NASA Astrophysics Data System (ADS)

Kinash, N.; Cook, A.; Sawyer, D.; Heber, R.

2017-12-01

In May 2017 the University of Texas led a drilling and pressure coring expedition in the northern Gulf of Mexico, UT-GOM2-01. The holes were located in Green Canyon Block 955, where the Gulf of Mexico Joint Industry Project Leg II identified an approximately 100m thick hydrate-filled course-grained levee unit in 2009. Two separate wells were drilled into this unit: Holes H002 and H005. In Hole H002, a cutting shoe drill bit was used to collect the pressure cores, and only 1 of the 8 cores collected was pressurized during recovery. The core recovery in Hole H002 was generally poor, about 34%, while the only pressurized core had 45% recovery. In Hole H005, a face bit was used during pressure coring where 13 cores were collected and 9 cores remained pressurized. Core recovery in Hole H005 was much higher, at about 75%. The type of bit was not the only difference between the holes, however. Drilling mud was used throughout the drilling and pressure coring of Hole H002, while only seawater was used during the first 80m of pressure cores collected in Hole H005. Herein we focus on lithologic analysis of Hole H002 with the goal of documenting and understanding core recovery in Hole H002 to compare with Hole H005. X-ray Computed Tomography (XCT) images were collected by Geotek on pressurized cores, mostly from Hole H005, and at Ohio State on unpressurized cores, mostly from Hole H002. The XCT images of unpressurized cores show minimal sedimentary structures and layering, unlike the XCT images acquired on the pressurized, hydrate-bearing cores. Only small sections of the unpressurized cores remained intact. The unpressurized cores appear to have two prominent facies: 1) silt that did not retain original sedimentary fabric and often was loose within the core barrel, and 2) dense mud sections with some sedimentary structures and layering present. On the XCT images, drilling mud appears to be concentrated on the sides of cores, but also appears in layers and fractures within intact core sections. On microscope images, the drilling mud also appears to saturate the pores in some silt intervals. Further analysis of the unpressurized cores is planned, including X-ray diffraction, grain size analysis and porosity measurements. These results will be compared to the pressurized cores to understand if further lithologic factors could have affected core recovery.

Preparing for Exascale: Towards convection-permitting, global atmospheric simulations with the Model for Prediction Across Scales (MPAS)

NASA Astrophysics Data System (ADS)

Heinzeller, Dominikus; Duda, Michael G.; Kunstmann, Harald

2017-04-01

With strong financial and political support from national and international initiatives, exascale computing is projected for the end of this decade. Energy requirements and physical limitations imply the use of accelerators and the scaling out to orders of magnitudes larger numbers of cores then today to achieve this milestone. In order to fully exploit the capabilities of these Exascale computing systems, existing applications need to undergo significant development. The Model for Prediction Across Scales (MPAS) is a novel set of Earth system simulation components and consists of an atmospheric core, an ocean core, a land-ice core and a sea-ice core. Its distinct features are the use of unstructured Voronoi meshes and C-grid discretisation to address shortcomings of global models on regular grids and the use of limited area models nested in a forcing data set, with respect to parallel scalability, numerical accuracy and physical consistency. Here, we present work towards the application of the atmospheric core (MPAS-A) on current and future high performance computing systems for problems at extreme scale. In particular, we address the issue of massively parallel I/O by extending the model to support the highly scalable SIONlib library. Using global uniform meshes with a convection-permitting resolution of 2-3km, we demonstrate the ability of MPAS-A to scale out to half a million cores while maintaining a high parallel efficiency. We also demonstrate the potential benefit of a hybrid parallelisation of the code (MPI/OpenMP) on the latest generation of Intel's Many Integrated Core Architecture, the Intel Xeon Phi Knights Landing.

Contamination Control of Freeze Shoe Coring System for Collection of Aquifer Sands

NASA Astrophysics Data System (ADS)

Homola, K.; van Geen, A.; Spivack, A. J.; Grzybowski, B.; Schlottenmier, D.

2017-12-01

We have developed and tested an original device, the freeze-shoe coring system, designed to recover undisturbed samples of water contained in sand-dominated aquifers. Aquifer sands are notoriously difficult to collect together with porewater from coincident depths, as high hydraulic permeability leads to water drainage and mixing during retrieval. Two existing corer designs were reconfigured to incorporate the freeze-shoe system; a Hydraulic Piston (HPC) and a Rotary (RC) Corer. Once deployed, liquid CO­2 contained in an interior tank is channeled to coils at the core head where it changes phase, rapidly cooling the deepest portion of the core. The resulting frozen core material impedes water loss during recovery. We conducted contamination tests to examine the integrity of cores retrieved during a March 2017 yard test deployment. Perfluorocarbon tracer (PFC) was added to the drill fluid and recovered cores were subsampled to capture the distribution of PFC throughout the core length and interior. Samples were collected from two HPC and one RC core and analyzed for PFC concentrations. The lowest porewater contamination, around 0.01% invasive fluid, occurs in the center of both HPC cores. The greatest contamination (up to 10%) occurs at the disturbed edges where core material contacts drill fluid. There was lower contamination in the core interior than top, bottom, and edges, as well as significantly lower contamination in HPC cores that those recovered with the RC. These results confirm that the freeze-shoe system, proposed for field test deployments in West Bengal, India, can successfully collect intact porewater and sediment material with minimal if any contamination from drill fluid.

Soil hydric characteristics and environmental ice nuclei influence supercooling capacity of hatchling painted turtles Chrysemys picta.

PubMed

Costanzo, J P; Litzgus, J D; Iverson, J B; Lee, R E

1998-11-01

Hatchling painted turtles (Chrysemys picta) hibernate in their shallow natal nests where temperatures occasionally fall below -10 C during cold winters. Because the thermal limit of freeze tolerance in this species is approximately -4 C, hatchlings rely on supercooling to survive exposure to extreme cold. We investigated the influence of environmental ice nuclei on susceptibility to inoculative freezing in hatchling C. picta indigenous to the Sandhills of west-central Nebraska. In the absence of external ice nuclei, hatchlings cooled to -14.6 1.9 C (mean s.e.m.; N=5) before spontaneously freezing. Supercooling capacity varied markedly among turtles cooled in physical contact with sandy soil collected from nesting locales or samples of the native soil to which water-binding agents (clay or peat) had been added, despite the fact that all substrata contained the same amount of moisture (7.5 % moisture, w/w). The temperature of crystallization (Tc) of turtles exposed to frozen native soil was -1.6 0.4 C (N=5), whereas turtles exposed to frozen soil/clay and soil/peat mixtures supercooled extensively (mean Tc values approximately -13 C). Hatchlings cooled in contact with drier (less than or equal to 4 % moisture) native soil also supercooled extensively. Thus, inoculative freezing is promoted by exposure to sandy soils containing abundant moisture and little clay or organic matter. Soil collected at turtle nesting locales in mid and late winter contained variable amounts of moisture (4-15 % w/w) and organic matter (1-3 % w/w). In addition to ice, the soil at turtle nesting locales may harbor inorganic and organic ice nuclei that may also seed the freezing of hatchlings. Bulk samples of native soil, which were autoclaved to destroy any organic nuclei, nucleated aqueous solutions at approximately -7 C (Tc range -6.1 to -8.2 C). Non-autoclaved samples contained water-extractable, presumably organic, ice nuclei (Tc range -4.4 to -5.3 C). Ice nuclei of both classes varied in potency among turtle nesting locales. Interaction with ice nuclei in the winter microenvironment determines whether hatchling C. picta remain supercooled or freeze and may ultimately account for differential mortality in nests at a given locale and for variation in winter survival rates among populations.

Microbial infections are associated with embryo mortality in Arctic-nesting geese.

USGS Publications Warehouse

Hansen, Cristina M.; Meixell, Brandt W.; Van Hemert, Caroline R.; Hare, Rebekah F.; Hueffer, Karsten

2015-01-01

To address the role of bacterial infection in hatching failure of wild geese, we monitored embryo development in a breeding population of Greater white-fronted geese (Anser albifrons) on the Arctic Coastal Plain of Alaska. During 2013, we observed mortality of normally developing embryos and collected 36 addled eggs for analysis. We also collected 17 infertile eggs for comparison. Using standard culture methods and gene sequencing to identify bacteria within collected eggs, we identified a potentially novel species of Neisseria in 33 eggs, Macrococcus caseolyticus in 6 eggs, and Streptococcus uberis and Rothia nasimurium in 4 eggs each. We detected seven other bacterial species at lower frequencies. Sequences of the 16S rRNA genes from the Neisseria isolates most closely matched sequences from N. animaloris and N. canis (96 to 97% identity), but phylogenetic analysis suggested substantial genetic differentiation between egg isolates and known Neisseria species. Although definitive sources of the bacteria remain unknown, we detected Neisseria DNA from swabs of eggshells, nest contents, and cloacae of nesting females. To assess the pathogenicity of bacteria identified in contents of addled eggs, we inoculated isolates of Neisseria, Macrococcus, Streptococcus, and Rothia at various concentrations into developing chicken eggs. Seven-day mortality rates varied from 70 to 100%, depending on the bacterial species and inoculation dose. Our results suggest that bacterial infections are a source of embryo mortality in wild geese in the Arctic.    

Inferences about nested subsets structure when not all species are detected

USGS Publications Warehouse

Cam, E.; Nichols, J.D.; Hines, J.E.; Sauer, J.R.

2000-01-01

Comparisons of species composition among ecological communities of different size have often provided evidence that the species in communities with lower species richness form nested subsets of the species in larger communities. In the vast majority of studies, the question of nested subsets has been addressed using information on presence-absence, where a '0' is interpreted as the absence of a given species from a given location. Most of the methodological discussion in earlier studies investigating nestedness concerns the approach to generation of model-based matrices. However, it is most likely that in many situations investigators cannot detect all the species present in the location sampled. The possibility that zeros in incidence matrices reflect nondetection rather than absence of species has not been considered in studies addressing nested subsets, even though the position of zeros in these matrices forms the basis of earlier inference methods. These sampling artifacts are likely to lead to erroneous conclusions about both variation over space in species richness and the degree of similarity of the various locations. Here we propose an approach to investigation of nestedness, based on statistical inference methods explicitly incorporating species detection probability, that take into account the probabilistic nature of the sampling process. We use presence-absence data collected under Pollock?s robust capture-recapture design, and resort to an estimator of species richness originally developed for closed populations to assess the proportion of species shared by different locations. We develop testable predictions corresponding to the null hypothesis of a nonnested pattern, and an alternative hypothesis of perfect nestedness. We also present an index for assessing the degree of nestedness of a system of ecological communities. We illustrate our approach using avian data from the North American Breeding Bird Survey collected in Florida Keys.

Measuring nighttime spawning behavior of chum salmon using a dual-frequency identification sonar (DIDSON)

USGS Publications Warehouse

Tiffan, K.F.; Rondorf, D.W.

2005-01-01

The striking body coloration and morphology that Pacific salmon display during spawning coupled with elaborate courtship behaviors suggest that visual cues are important during their reproductive period. To date, virtually all existing information on chum salmon (Oncorhynchus keta) spawning behavior has been derived from studies conducted during the daytime, and has contributed to the assumption that salmon do not spawn at night. We tested this assumption using a new technology - a dual-frequency identification sonar (DIDSON) - to describe and measure nighttime spawning behavior of wild chum salmon in the Columbia River. The DIDSON produces detailed, video-like images using sound, which enabled us to collect behavioral information at night in complete darkness. The display of DIDSON images enabled fish movements and behaviors to be spatially quantified. We collected continuous observational data on 14 pairs of chum salmon in a natural spawning channel during the daytime and nighttime. Spawners of both genders were observed chasing intruders during nighttime and daytime as nests were constructed. Regardless of diel period, females were engaged in digging to both construct nests and cover eggs, and courting males exhibited the pre-spawning behavior of tail crossing. We observed a total of 13 spawning events, of which nine occurred at night and four occurred during the day. The behaviors we observed at night suggest the assumption that chum salmon do not spawn at night is false. Once chum salmon begin nest construction, visual cues are apparently not required for courtship, nest defense, and spawning. We speculate that non-visual cues (e.g. tactile and auditory) enable chum salmon to carry out most spawning behaviors at night. Our findings have implications for how nighttime flows from hydroelectric dams on the Columbia River are managed for power production and protection of imperiled salmon stocks.

Interaction of Environmental Moisture, Rainbands, and Inner-Core Dynamics in Hurricanes Katrina and Rita

NASA Astrophysics Data System (ADS)

Ortt, D.; Chen, S. S.

2007-12-01

The interaction of the environmental water vapor distribution around a tropical cyclone (TC), rainbands, and inner- core dynamics can affect hurricane structure and intensity change, which is not well understood. Although previous studies have addressed various aspects of this problem, a full three way interaction and its implications for hurricane intensity change has not been documented. Using data collected during the Hurricane Rainband and Intensity Experiment (RAINEX) in Hurricanes Katrina and Rita, the three way interaction of the environment moisture, rainbands, and inner-core dynamics can be evaluated. The TRMM TMI total precipitable water (PW) data with 1/4 degree horizontal resolution, TRMM TMI rainrate data with a 4 km horizontal resolution and the GPS dropsondes with a ½ second temporal resolution are used to characterize the environmental moisture. The high resolution model output from the real-time MM5 forecasts of Hurricanes Katrina and Rita are used to investigate the complex interactions in both storms. The model forecasts were made using a vortex-following nested grid with horizontal resolutions of 15, 5, and 1.67km, respectively. There were 28 vertical sigma levels. The Goddard microphysics scheme was used. The TRMM PW and the GPS dropsonde data show strong moisture gradients in the outer rainband region in Rita with a dry outer environment, which may contribute to the development of outer rainbands with a high circularity. It created a secondary ring of potential vorticity (PV). In addition, the vortex Rossby waves (VRW) propagating radialy outward from the eyewall were unable to propagate beyond the secondary ring of PV. The combination of these VRW and the environmental water vapor distribution may play a role in enhancing the rainbands that developed into a secondary eyewall, which leads to a temporary weakening of the hurricane. In contrast, Katrina had a relative weak moisture gradient surrounding the storm. There were not persistent outer rainbands with high circularity, which may explain the different evolution in Katrina compared with Rita.

[Iditification of five imported cases of Plasmodium ovale wallikeri infection in Zhejiang Province].

PubMed

Zhang, Ling-ling; Ruan, Wei; Chen, Hua-liang; Lu, Qiao-yi; Yao, Li-nong

2014-10-01

To identify and analyze Plasmodium ovale wallikeri in 5 imported malaria cases, who were detected positive by microscopy and negative by conventional PCR. Epidemiological information and blood samples were collected from the five patients. The detection was conducted by microscopy, Rapid Diagnostic Test (RDT) and nested PCR with Plasmodium genus-specific, species-specific and Plasmodium ovale wallikeri-specific primers. The amplified products were sequenced and Blast analysis was performed on line in NCBI. The five patients returned from Africa, and all had a history of malaria. They were microscopically positive for Plasmodium sp., and two cases showed Pan positive RDT result. All blood samples were negative for four Plasmodium spp. by conventional nested PCR, but positive by nested PCR with Plasmodium ovale wallikeri-specific primers. Blast analysis showed that the amplified sequences of the five cases had complete homology with P. ovale wallikeri clone RSH10 18S ribosomal RNA gene (Accession No. KF219561.1). The five cases which classified as positive by microscopy while negative by conventional PCR have been confirmed as Plasmodium ovale wallikeri infection by nested PCR with P. ovale wallikeri-specific primers.

Local density regulates migratory songbird reproductive success through effects on double-brooding and nest predation.

PubMed

Woodworth, Bradley K; Wheelwright, Nathaniel T; Newman, Amy E M; Norris, D Ryan

2017-08-01

Knowledge of the density-dependent processes that regulate animal populations is key to understanding, predicting, and conserving populations. In migratory birds, density-dependence is most often studied during the breeding season, yet we still lack a robust understanding of the reproductive traits through which density influences individual reproductive success. We used 27-yr of detailed, individual-level productivity data from an island-breeding population of Savannah sparrows Passerculus sandwichensis to evaluate effects of local and total annual population density on female reproductive success. Local density (number of neighbors within 50 m of a female's nest) had stronger effects on the number of young fledged than did total annual population density. Females nesting in areas of high local density were more likely to suffer nest predation and less likely to initiate and fledge a second clutch, which led to fewer young fledged in a season. Fledging fewer young subsequently decreased the likelihood of a female recruiting offspring into the breeding population in a subsequent year. Collectively, these results provide insight into the scale and reproductive mechanisms mediating density-dependent reproductive success and fitness in songbirds. © 2017 by the Ecological Society of America.

Videographic evidence of endangered species depredation by feral cat

USGS Publications Warehouse

Judge, Seth; Lippert, Jill S.; Misajon, Kathleen; Hu, Darcy; Hess, Steven C.

2012-01-01

Feral cats (Felis cafus) have long been implicated as nest predators of endangered 'Ua'u (Hawaiian Petrel; Pterodroma sandwichensis) on Hawaii Island, but until recently, visual confirmation has been limited by available technology. 'Ua'u nest out of view, deep inside small cavities, on alpine lava flows. During the breeding seasons of 2007 and 2008, we monitored known burrows within Hawai'i Volcanoes National Park. Digital infrared video cameras assisted in determining the breeding behaviour and nesting success at the most isolated of burrows. With 7 cameras, we collected a total of 819 videos and 89 still photographs of adult and nestling 'Ua'u at 14 burrows. Videos also confirmed the presence of rats (Rattus spp.) at 2 burrows, 'Ōmao (Myadestes obscurus) at 8 burrows, and feral cats at 6 burrows. A sequence of videos showed a feral cat taking a downy 'Ua'u chick from its burrow, representing the first direct evidence of 'Ua'u depredation by feral cat in Hawai'i. This technique provides greater understanding of feral cat behaviour in 'Ua'u colonies, which may assist in the development of more targeted management strategies to reduce nest predation on endangered insular bird species.

Early diagnosis of typhoid fever by nested PCR for flagellin gene of Salmonella enterica serotype Typhi.

PubMed

Khan, S; Harish, B N; Menezes, G A; Acharya, N S; Parija, S C

2012-11-01

Typhoid fever caused by Salmonella Typhi continues to be a major health problem in spite of the use of antibiotics and the development of newer antibacterial drugs. Inability to make an early laboratory diagnosis and resort to empirical therapy, often lead to increased morbidity and mortality in cases of typhoid fever. This study was aimed to optimize a nested PCR for early diagnosis of typhoid fever and using it as a diagnostic tool in culture negative cases of suspected typhoid fever. Eighty patients with clinical diagnosis of typhoid fever and 40 controls were included in the study. The blood samples collected were subjected to culture, Widal and nested PCR targeting the flagellin gene of S. Typhi. The sensitivity of PCR on blood was found to be 100 per cent whereas the specificity was 76.9 per cent. The positive predictive value (PPV) of PCR was calculated to be 76.9 per cent with an accuracy of 86 per cent. None of the 40 control samples gave a positive PCR. Due to its high sensitivity and specificity nested PCR can be used as a useful tool to diagnose clinically suspected, culture negative cases of typhoid fever.

MIGRATION PATTERNS, USE OF STOPOVER AREAS, AND AUSTRAL SUMMER MOVEMENTS OF SWAINSON’S HAWKS

PubMed Central

Kochert, Michael N.; Fuller, Mark R.; Schueck, Linda S.; Bond, Laura; Bechard, Marc J.; Woodbridge, Brian; Holroyd, Geoff; Martell, Mark; Banasch, Ursula

2015-01-01

From 1995–1998, we tracked movements of adult Swainson’s Hawks (Buteo swainsoni) using satellite telemetry to characterize migration, important stopover areas, and austral summer movements. We tagged 46 hawks from July - September on their nesting grounds in seven U.S. states and two Canadian provinces. Swainson’s Hawks basically followed three routes south on a broad front, converged along the east coast of central Mexico, and followed a concentrated corridor to a communal austral summer area in central Argentina. North of 20° N, southward and northward tracks differed little for individuals from east of the Continental Divide but differed greatly (up to 1700 km) for individuals from west of the Continental Divide. Hawks left the breeding grounds mid-August to mid-October; departure dates did not differ by location, year, or sex. South migration lasted 42 to 98 days, and north migration took 51 to 82 days. On south migration, 36% of the Swainson’s Hawks departed the nesting grounds nearly 3 weeks earlier than the other radio marked hawks and made stopovers 9.0 – 26.0 days long in seven separate areas, mainly in the southern Great Plains, southern Arizona and New Mexico, and north-central Mexico. The austral period lasted 76 to 128 days. All Swainson’s Hawks used a core area in central Argentina within 23% of the 738800 km2 austral summer range where they frequently moved long distances (up to 1600 km). Conservation of Swainson’s Hawks must be an international effort that considers habitats used during nesting and non-nesting seasons including migration stopovers. PMID:26380528

Methods of developing core collections based on the predicted genotypic value of rice ( Oryza sativa L.).

PubMed

Li, C T; Shi, C H; Wu, J G; Xu, H M; Zhang, H Z; Ren, Y L

2004-04-01

The selection of an appropriate sampling strategy and a clustering method is important in the construction of core collections based on predicted genotypic values in order to retain the greatest degree of genetic diversity of the initial collection. In this study, methods of developing rice core collections were evaluated based on the predicted genotypic values for 992 rice varieties with 13 quantitative traits. The genotypic values of the traits were predicted by the adjusted unbiased prediction (AUP) method. Based on the predicted genotypic values, Mahalanobis distances were calculated and employed to measure the genetic similarities among the rice varieties. Six hierarchical clustering methods, including the single linkage, median linkage, centroid, unweighted pair-group average, weighted pair-group average and flexible-beta methods, were combined with random, preferred and deviation sampling to develop 18 core collections of rice germplasm. The results show that the deviation sampling strategy in combination with the unweighted pair-group average method of hierarchical clustering retains the greatest degree of genetic diversities of the initial collection. The core collections sampled using predicted genotypic values had more genetic diversity than those based on phenotypic values.

The USDA barley core collection: genetic diversity, population structure, and potential for genome-wide association studies.

PubMed

Muñoz-Amatriaín, María; Cuesta-Marcos, Alfonso; Endelman, Jeffrey B; Comadran, Jordi; Bonman, John M; Bockelman, Harold E; Chao, Shiaoman; Russell, Joanne; Waugh, Robbie; Hayes, Patrick M; Muehlbauer, Gary J

2014-01-01

New sources of genetic diversity must be incorporated into plant breeding programs if they are to continue increasing grain yield and quality, and tolerance to abiotic and biotic stresses. Germplasm collections provide a source of genetic and phenotypic diversity, but characterization of these resources is required to increase their utility for breeding programs. We used a barley SNP iSelect platform with 7,842 SNPs to genotype 2,417 barley accessions sampled from the USDA National Small Grains Collection of 33,176 accessions. Most of the accessions in this core collection are categorized as landraces or cultivars/breeding lines and were obtained from more than 100 countries. Both STRUCTURE and principal component analysis identified five major subpopulations within the core collection, mainly differentiated by geographical origin and spike row number (an inflorescence architecture trait). Different patterns of linkage disequilibrium (LD) were found across the barley genome and many regions of high LD contained traits involved in domestication and breeding selection. The genotype data were used to define 'mini-core' sets of accessions capturing the majority of the allelic diversity present in the core collection. These 'mini-core' sets can be used for evaluating traits that are difficult or expensive to score. Genome-wide association studies (GWAS) of 'hull cover', 'spike row number', and 'heading date' demonstrate the utility of the core collection for locating genetic factors determining important phenotypes. The GWAS results were referenced to a new barley consensus map containing 5,665 SNPs. Our results demonstrate that GWAS and high-density SNP genotyping are effective tools for plant breeders interested in accessing genetic diversity in large germplasm collections.

Construction of Core Collections Suitable for Association Mapping to Optimize Use of Mediterranean Olive (Olea europaea L.) Genetic Resources

PubMed Central

El Bakkali, Ahmed; Haouane, Hicham; Moukhli, Abdelmajid; Costes, Evelyne; Van Damme, Patrick; Khadari, Bouchaib

2013-01-01

Phenotypic characterisation of germplasm collections is a decisive step towards association mapping analyses, but it is particularly expensive and tedious for woody perennial plant species. Characterisation could be more efficient if focused on a reasonably sized subset of accessions, or so-called core collection (CC), reflecting the geographic origin and variability of the germplasm. The questions that arise concern the sample size to use and genetic parameters that should be optimized in a core collection to make it suitable for association mapping. Here we investigated these questions in olive (Olea europaea L.), a perennial fruit species. By testing different sampling methods and sizes in a worldwide olive germplasm bank (OWGB Marrakech, Morocco) containing 502 unique genotypes characterized by nuclear and plastid loci, a two-step sampling method was proposed. The Shannon-Weaver diversity index was found to be the best criterion to be maximized in the first step using the Core Hunter program. A primary core collection of 50 entries (CC50) was defined that captured more than 80% of the diversity. This latter was subsequently used as a kernel with the Mstrat program to capture the remaining diversity. 200 core collections of 94 entries (CC94) were thus built for flexibility in the choice of varieties to be studied. Most entries of both core collections (CC50 and CC94) were revealed to be unrelated due to the low kinship coefficient, whereas a genetic structure spanning the eastern and western/central Mediterranean regions was noted. Linkage disequilibrium was observed in CC94 which was mainly explained by a genetic structure effect as noted for OWGB Marrakech. Since they reflect the geographic origin and diversity of olive germplasm and are of reasonable size, both core collections will be of major interest to develop long-term association studies and thus enhance genomic selection in olive species. PMID:23667437

Demographics and movements of least terns and piping plovers in the Central Platte River Valley, Nebraska

USGS Publications Warehouse

Roche, Erin A.; Sherfy, Mark H.; Ring, Megan M.; Shaffer, Terry L.; Anteau, Michael J.; Stucker, Jennifer H.

2016-08-09

The Central Platte River Valley provides breeding habitat for a variety of migratory birds, including federally endangered interior least terns (Sternula antillarum; least tern) and threatened piping plovers (Charadrius melodus). Since 2009, researchers have collected demographic data on both species that span their lifecycle (that is, from egg laying through survival of adults). Demographic data were used to estimate vital rates (for example, nest survival, chick survival, and so on) for both species and assess how these vital rates were related to type and age of nesting habitat. Nest survival of both species was unrelated to the age of the site a nest was initiated on. Piping plover chick survival to fledging age was not related to the age of the site it was hatched at, however, the probability of a least tern chick surviving to fledging was higher at older sites. In general there were fewer piping plover nests than least tern nests found at sites created through either the physical construction of a new site or new vegetation management regimes, during 2009–14.Mean daily least tern nest survival was 0.9742 (95-percent confidence interval [CI]: 0.9692–0.9783) and cumulative nest survival was 0.59 (95-percent CI: 0.53–0.65). Mean daily least tern chick survival was 0.9602 (95-percent CI: 0.9515–0.9673) and cumulative survival to fledging was 0.54 (95-percent CI = 0.48–0.61). Annual apparent survival rates were estimated at 0.42 (95-percent CI = 0.22–0.64) for adult least terns nesting in the Central Platte River Valley and an apparent survival rate of 0.14 (95-pecent CI = 0.04–0.41) for juvenile least terns. The number of least tern nests present at sites created during 2009–14 was associated with the age of the site; more least tern nests were associated with older sites. During 2009–14, there were four (less than 1 percent of all chicks marked) least tern chicks hatched from the Central Platte River Valley that were subsequently captured on nests as adults. Two of these least terns returned to nest at the same site they had hatched from. Ten instances were documented in which an adult least tern could either switch to nest at a new location or remain at the previous location with the onset of a new year. In five (50 percent) of these instances, least terns returned to nest on the site where they had nested in a previous year.For piping plovers, mean daily apparent nest survival was 0.9880 (95-pecent CI: 0.9836–0.9912) and cumulative nest survival was 0.66 (95-pecent CI: 0.57–0.74). Mean daily piping plover chick survival was 0.9621 (95-pecent CI: 0.9514–0.9706) and cumulative survival to fledging was 0.46 (95-pecent CI = 0.37– 0.56). The annual apparent survival estimate for adult piping plovers nesting in the Central Platte River Valley was 0.76 (95-pecent CI = 0.65–0.85) and was 0.20 (95-pecent CI = 0.14–0.29) for juvenile piping plovers. The number of piping plover nests present at sites created through either the physical construction of a new site or new vegetation management regimes was also associated with site age, with more piping plover nests associated with older sites; however, in general there were fewer piping plover nests found at created sites than least tern nests. Only first-year adult piping plovers were observed on sites in the first year of availability, whereas older sites had a higher proportion of after-first-year adult piping plovers than first-year adult piping plovers. Twelve piping plover chicks (approximately 3 percent of all chicks marked) hatched from the Central Platte River Valley and were subsequently documented on nests as adults. All piping plovers returned to nest on different sites from the one on which they hatched. A total of 45 instances were documented in which an adult plover could either switch to nest at a new location or remain at the previous location with the onset of a new year. In 39 instances (87 percent), the adult nested on the same site as its prior documented nesting attempt and in 6 of these instances the adult switched to a new nesting location between years. There were 13 of 75 uniquely identifiable piping plovers observed to renest (that is, initiate more than one nest in a season) during 2009–14; no renests were observed among uniquely identifiable least terns. In all but one case, piping plover renests were found at the same site as the first nest initiated that season. For birds that renested, the mean initiation date of the first nest was May 6 and the mean initiation date of the second nest was June 8. On average, renests were initiated 7.5 days plus or minus 7.3 (SD [standard deviation]) following the date the initial nesting attempt was ‘fated’ (considered either failed or hatched).

Associating mapping of stigma characteristics using the USDA rice core collection

USDA-ARS?s Scientific Manuscript database

A mini-core from the USDA rice core collection was phenotyped for nine traits of stigma and spikelet and genotyped with 109 DNA markers. Marker-trait association mapping was used to identify the regions associated with the nine traits. Resulting associations were adjusted using false discovery rate ...

Arboreal Ant Colonies as ‘Hot-Points’ of Cryptic Diversity for Myrmecophiles: The Weaver Ant Camponotus sp. aff. textor and Its Interaction Network with Its Associates

PubMed Central

Pérez-Lachaud, Gabriela; Lachaud, Jean-Paul

2014-01-01

Introduction Systematic surveys of macrofaunal diversity within ant colonies are lacking, particularly for ants nesting in microhabitats that are difficult to sample. Species associated with ants are generally small and rarely collected organisms, which makes them more likely to be unnoticed. We assumed that this tendency is greater for arthropod communities in microhabitats with low accessibility, such as those found in the nests of arboreal ants that may constitute a source of cryptic biodiversity. Materials and Methods We investigated the invertebrate diversity associated with an undescribed, but already threatened, Neotropical Camponotus weaver ant. As most of the common sampling methods used in studies of ant diversity are not suited for evaluating myrmecophile diversity within ant nests, we evaluated the macrofauna within ant nests through exhaustive colony sampling of three nests and examination of more than 80,000 individuals. Results We identified invertebrates from three classes belonging to 18 taxa, some of which were new to science, and recorded the first instance of the co-occurrence of two brood parasitoid wasp families attacking the same ant host colony. This diversity of ant associates corresponded to a highly complex interaction network. Agonistic interactions prevailed, but the prevalence of myrmecophiles was remarkably low. Conclusions Our data support the hypothesis of the evolution of low virulence in a variety of symbionts associated with large insect societies. Because most myrmecophiles found in this work are rare, strictly specific, and exhibit highly specialized biology, the risk of extinction for these hitherto unknown invertebrates and their natural enemies is high. The cryptic, far unappreciated diversity within arboreal ant nests in areas at high risk of habitat loss qualifies these nests as ‘hot-points’ of biodiversity that urgently require special attention as a component of conservation and management programs. PMID:24941047

The Foraging Tunnel System of the Namibian Desert Termite, Baucaliotermes hainesi

PubMed Central

Tschinkel, Walter R.

2010-01-01

The harvester termite, Baucaliotermes hainesi (Fuller) (Termitidae: Nasutitermitinae), is an endemic in southern Namibia, where it collects and eats dry grass. At the eastern, landward edge of the Namib Desert, the nests of these termites are sometimes visible above ground surface, and extend at least 60 cm below ground. The termites gain access to foraging areas through underground foraging tunnels that emanate from the nest. The looseness of the desert sand, combined with the hardness of the cemented sand tunnels allowed the use of a gasolinepowered blower and soft brushes to expose tunnels lying 5 to 15 cm below the surface. The tunnels form a complex system that radiates at least 10 to 15 m from the nest with crossconnections between major tunnels. At 50 to 75 cm intervals, the tunnels are connected to the surface by vertical risers that can be opened to gain foraging access to the surrounding area. Foraging termites rarely need to travel more than a meter on the ground surface. The tunnels swoop up and down forming high points at riser locations, and they have a complex architecture. In the center runs a smooth, raised walkway along which termites travel, and along the sides lie pockets that act as depots where foragers deposit grass pieces harvested from the surface. Presumably, these pieces are transported to the nest by a second group of termites. There are also several structures that seem to act as vertical highways to greater depths, possibly even to moist soil. A census of a single nest revealed about 45,000 termites, of which 71% were workers, 9% soldiers and 6% neotenic supplementary reproductives. The nest consisted of a hard outer “carapace” of cemented sand, with a central living space of smooth, sweeping arches and surfaces. A second species of termite, Promirotermes sp. nested in the outer carapace. PMID:20672982

Inferring Foraging Areas of Nesting Loggerhead Turtles Using Satellite Telemetry and Stable Isotopes

PubMed Central

Ceriani, Simona A.; Roth, James D.; Evans, Daniel R.; Weishampel, John F.; Ehrhart, Llewellyn M.

2012-01-01

In recent years, the use of intrinsic markers such as stable isotopes to link breeding and foraging grounds of migratory species has increased. Nevertheless, several assumptions still must be tested to interpret isotopic patterns found in the marine realm. We used a combination of satellite telemetry and stable isotope analysis to (i) identify key foraging grounds used by female loggerheads nesting in Florida and (ii) examine the relationship between stable isotope ratios and post-nesting migration destinations. We collected tissue samples for stable isotope analysis from 14 females equipped with satellite tags and an additional 57 untracked nesting females. Telemetry identified three post-nesting migratory pathways and associated non-breeding foraging grounds: (1) a seasonal continental shelf–constrained migratory pattern along the northeast U.S. coastline, (2) a non-breeding residency in southern foraging areas and (3) a residency in the waters adjacent to the breeding area. Isotopic variability in both δ13C and δ15N among individuals allowed identification of three distinct foraging aggregations. We used discriminant function analysis to examine how well δ13C and δ15N predict female post-nesting migration destination. The discriminant analysis classified correctly the foraging ground used for all but one individual and was used to predict putative feeding areas of untracked turtles. We provide the first documentation that the continental shelf of the Mid- and South Atlantic Bights are prime foraging areas for a large number (61%) of adult female loggerheads from the largest loggerhead nesting population in the western hemisphere and the second largest in the world. Our findings offer insights for future management efforts and suggest that this technique can be used to infer foraging strategies and residence areas in lieu of more expensive satellite telemetry, enabling sample sizes that are more representative at the population level. PMID:23028943

Impacts of Water Levels on Breeding Canada Geese and the Methodology for Mitigation and Enhancement in the Flathead Drainage, 1984 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mackey, Dennis L.

1985-01-01

The lower Flathead System Canada Goose Study was initiated to determine population trends and the effects of water level fluctuations on nest and brood habitat on the southern half of Flathead Lake and the lower Flathead River as a result of the operations of Kerr Dam. This report presents data collected during the 1984 field season as part of an ongoing project. Geese used Pablo, Kicking Horse, Ninepipe Reservoirs heavily during late summer and fall. Use of the river by geese was high during the winter, when the reservoirs were frozen, and during the breeding period. Most breeding geese leftmore » the river after broods fledged. Thirteen percent of the artificial tree nest structures on the river were used by nesting geese. Goose nest initiation on the river peaked the last week in March through the first week in April, and hatching peaked the first week in May. Predation was the most significant cause of nest loss on the river, and nest loss by flooding was not observed. Avian predation was the single largest factor contributing to nest loss on the lake. Habitat use was studied in 4 brood areas on the river and 8 brood areas on the lake, and available habitat was assessed for 2 portions of both the lake and the river. Brood habitat use was significantly different from the available habitat in all areas studied. On the lower river, broods used wheat fields, gravel bars, and shrub habitats. On the upper river, coniferous forest and shrub habitats were preferred. On the West Bay of the lake, brood areas consisted primarily of lawns and tall herbaceous habitat, while on the South Bay, marshes dominated the brood areas studied. Water levels on the river and lake affect both accessibility of these areas to brooding geese, and the ecology of the habitats preferred by geese. 43 refs., 24 figs., 31 tabs.« less

Occurrence of the diamondback terrapin (Malaclemys terrapin littoralis) at South Deer Island in Galveston Bay, Texas, April 2001-May 2002

USGS Publications Warehouse

Hogan, Jennifer L.

2003-01-01

One-hundred thirty-five terrapins were captured (116 individuals, 19 recaptures) in occurrence and nesting and basking surveys at South Deer Island in Galveston Bay, Texas, during April 2001–May 2002. Along the southern shore of the island, terrapins were captured in crab traps placed in shallow water offshore; in the lagoon on the island, terrapins were captured by hand while walking along the shore. In the nesting and basking surveys, areas of the island with continuous patches of exposed shell typically were checked twice a day for nesting and basking terrapins, except during the last 2 months of the study, when more intensive monitoring was conducted. The occurrence surveys resulted in 119 terrapins captured in crab traps and nine captured by hand around the lagoon. The nesting and basking surveys yielded seven terrapins. Only one was nesting, although the nest is believed to be the first documented terrapin nest found in Texas. Three terrapins were captured swimming near shell beaches, and three more were captured basking on shell beaches. The most terrapins were captured during April–May 2001 and April–May 2002. Biometric data collected on terrapins captured showed size dimorphism on the basis of sex. The median female straight-line carapace length was 17.8 centimeters, 1.4 times larger than the median male carapace length, 13.1 centimeters. The median female mass was 1,021 grams, 2.9 times larger than the median male mass, 354 grams. Intra-specific variation occurred in the colorations and markings of terrapins captured. Anomalies - lesions, deformities, barnacles, and algae - were common among terrapins captured. Both lesions and deformities were more common among males than females. Dominant vegetation or substrate associated with terrapin habitat included saltwort, slender seapurslane, seabeach orache, shell, and woody debris.

Snowpack and variation in reproductive ecology of a montane ground-nesting passerine, Junco hyemalis

USGS Publications Warehouse

Smith, Kimberly G.; Andersen, Douglas C.

1985-01-01

Effects of snow depth and rate of snowmelt on reproduction of a montane ground-nesting passerine were examined in a 5-year study of Dark-eyed Juncos Junco hyemalis in northern Utah, USA. Distribution of clucth sizes differed significantly among years. Although most clutches contained four eggs, 3-egg clutches, due primarily to second nestings, were more common during a year of early snowmelt and 5-egg clutches were most common during two years of late snowmelt. Average clutch size was lowest in an early snowmelt year and average clutch size and date at which meadows became snow-free were significantly positively correlated. Average hatching date of 4-egg clutches was also significantly positively correlated with date at which meadows became snow-free demonstrating that most birds tracked the pattern of snowmelt. Early snowmelt may allow more pairs to attempt second nesting, but late-lying snow causes breeding to be delayed, allowing time for only one nesting attempt. During this delay, female juncos continue to feed and some may gain enough reserves to produce larger clutches, accounting for the increase in average clutch size in years of late snowmelt. Three female juncos examined in June 1982, a period of late snowmelt, had significantly more lipid reserves than did six males collected at the same time, suggesting that females are not physiologically stressed while awaiting snowmelt. By tracking snowmelt patterns, juncos synchronize production of young with peak summer insect abundance and potentially decrease risk of predation. Snow depth and rate of snowmelt are thus proximate environmental factors that may influence the reproductive ecology of ground-nesting passerines.

Evidence for Ventilation through Collective Respiratory Movements in Giant Honeybee (Apis dorsata) Nests.

PubMed

Kastberger, Gerald; Waddoup, Dominique; Weihmann, Frank; Hoetzl, Thomas

2016-01-01

The Asian giant honeybees (Apis dorsata) build single-comb nests in the open, which makes this species particularly susceptible to environmental strains. Long-term infrared (IR) records documented cool nest regions (CNR) at the bee curtain (nCNR = 207, nnests > 20) distinguished by marked negative gradients (ΔTCNR/d < -3°C / 5 cm) at their margins. CNRs develop and recede within minutes, predominantly at higher ambient temperatures in the early afternoon. The differential size (ΔACNR) and temperature (ΔTCNR) values per time unit correlated mostly positively (RAT > 0) displaying the Venturi effect, which evidences funnel properties of CNRs. The air flows inwards through CNRs, which is verified by the negative spatial gradient ΔTCNR/d, by the positive grading of TCNR with Tamb and lastly by fanners which have directed their abdomens towards CNRs. Rare cases of RAT < 0 (< 3%) document closing processes (for ΔACNR/Δt < -0.4 cm2/s) but also suggest ventilation of the bee curtain (for ΔACNR/Δt > +0.4 cm2/s) displaying "inhalation" and "exhalation" cycling. "Inhalation" could be boosted by bees at the inner curtain layers, which stretch their extremities against the comb enlarging the inner nest lumen and thus causing a pressure fall which drives ambient air inwards through CNR funnels. The relaxing of the formerly "activated" bees could then trigger the "exhalation" process, which brings the bee curtain, passively by gravity, close to the comb again. That way, warm, CO2-enriched nest-borne air is pressed outwards through the leaking mesh of the bee curtain. This ventilation hypothesis is supported by IR imaging and laser vibrometry depicting CNRs in at least four aspects as low-resistance convection funnels for maintaining thermoregulation and restoring fresh air in the nest.

Evaluation of Trail-Cameras for Analyzing the Diet of Nesting Raptors Using the Northern Goshawk as a Model

PubMed Central

García-Salgado, Gonzalo; Rebollo, Salvador; Pérez-Camacho, Lorenzo; Martínez-Hesterkamp, Sara; Navarro, Alberto; Fernández-Pereira, José-Manuel

2015-01-01

Diet studies present numerous methodological challenges. We evaluated the usefulness of commercially available trail-cameras for analyzing the diet of Northern Goshawks (Accipiter gentilis) as a model for nesting raptors during the period 2007–2011. We compared diet estimates obtained by direct camera monitoring of 80 nests with four indirect analyses of prey remains collected from the nests and surroundings (pellets, bones, feather-and-hair remains, and feather-hair-and-bone remains combined). In addition, we evaluated the performance of the trail-cameras and whether camera monitoring affected Goshawk behavior. The sensitivity of each diet-analysis method depended on prey size and taxonomic group, with no method providing unbiased estimates for all prey sizes and types. The cameras registered the greatest number of prey items and were probably the least biased method for estimating diet composition. Nevertheless this direct method yielded the largest proportion of prey unidentified to species level, and it underestimated small prey. Our trail-camera system was able to operate without maintenance for longer periods than what has been reported in previous studies with other types of cameras. Initially Goshawks showed distrust toward the cameras but they usually became habituated to its presence within 1–2 days. The habituation period was shorter for breeding pairs that had previous experience with cameras. Using trail-cameras to monitor prey provisioning to nests is an effective tool for studying the diet of nesting raptors. However, the technique is limited by technical failures and difficulties in identifying certain prey types. Our study also shows that cameras can alter adult Goshawk behavior, an aspect that must be controlled to minimize potential negative impacts. PMID:25992956

Evaluation of trail-cameras for analyzing the diet of nesting raptors using the Northern Goshawk as a model.

PubMed

García-Salgado, Gonzalo; Rebollo, Salvador; Pérez-Camacho, Lorenzo; Martínez-Hesterkamp, Sara; Navarro, Alberto; Fernández-Pereira, José-Manuel

2015-01-01

Diet studies present numerous methodological challenges. We evaluated the usefulness of commercially available trail-cameras for analyzing the diet of Northern Goshawks (Accipiter gentilis) as a model for nesting raptors during the period 2007-2011. We compared diet estimates obtained by direct camera monitoring of 80 nests with four indirect analyses of prey remains collected from the nests and surroundings (pellets, bones, feather-and-hair remains, and feather-hair-and-bone remains combined). In addition, we evaluated the performance of the trail-cameras and whether camera monitoring affected Goshawk behavior. The sensitivity of each diet-analysis method depended on prey size and taxonomic group, with no method providing unbiased estimates for all prey sizes and types. The cameras registered the greatest number of prey items and were probably the least biased method for estimating diet composition. Nevertheless this direct method yielded the largest proportion of prey unidentified to species level, and it underestimated small prey. Our trail-camera system was able to operate without maintenance for longer periods than what has been reported in previous studies with other types of cameras. Initially Goshawks showed distrust toward the cameras but they usually became habituated to its presence within 1-2 days. The habituation period was shorter for breeding pairs that had previous experience with cameras. Using trail-cameras to monitor prey provisioning to nests is an effective tool for studying the diet of nesting raptors. However, the technique is limited by technical failures and difficulties in identifying certain prey types. Our study also shows that cameras can alter adult Goshawk behavior, an aspect that must be controlled to minimize potential negative impacts.

Contaminant exposure and reproductive success of Ospreys (Pandion haliaetus) nesting in Chesapeake Bay regions of concern

USGS Publications Warehouse

Rattner, B.A.; McGowan, P.C.; Golden, N.H.; Hatfield, J.S.; Toschik, P.C.; Lukei, R.F.; Hale, R.C.; Schmitz-Afonso, I.; Rice, C.P.

2004-01-01

The Chesapeake Bay osprey population has more than doubled in size since restrictions were placed on the production and use of DDT and other toxic organochlorine contaminants in the 1970s. Ospreys are now nesting in the most highly polluted portions of the Bay. In 2000 and 2001, contaminant exposure and reproduction were monitored in ospreys nesting in regions of concern, including Baltimore Harbor and the Patapsco River, the Anacostia and middle Potomac rivers, and the Elizabeth River, and a presumed reference site consisting of the South, West, and Rhode rivers. A 'sample egg' from each study nest was collected for contaminant analysis, and the fate of eggs remaining in each nest (n = 14-16/site) was monitored at 7- to 10-day intervals from egg incubation through fledging of young. Ospreys fledged young in regions of concern (observed success: 0.88 -1.53 fledglings/active nest), although productivity was marginal for sustaining local populations in Baltimore Harbor and the Patapsco River and in the Anacostia and middle Potomac rivers. Concentrations of p,p'DDE and many other organochlorine pesticides or metabolites, total PCBs, some arylhydrocarbon receptor-active PCB congeners and polybrominated diphenyl ether congeners, and perfluorooctanesulfonate were often greater in sample eggs from regions of concern compared to the reference site. Nonetheless, logistic regression analyses did not provide evidence linking marginal productivity to p,p' -DDE, total PCBs, or arylhydrocarbon receptor-active PCB congener exposure in regions of concern. In view of the moderate concentrations of total PCBs in eggs from the reference site, concerns related to new and emerging toxicants, and the absence of ecotoxicological data for terrestrial vertebrates in many Bay tributaries, a more thorough spatial evaluation of contaminant exposure in ospreys throughout the Chesapeake may be warranted.

Core Research Center

USGS Publications Warehouse

Hicks, Joshua; Adrian, Betty

2009-01-01

The Core Research Center (CRC) of the U.S. Geological Survey (USGS), located at the Denver Federal Center in Lakewood, Colo., currently houses rock core from more than 8,500 boreholes representing about 1.7 million feet of rock core from 35 States and cuttings from 54,000 boreholes representing 238 million feet of drilling in 28 States. Although most of the boreholes are located in the Rocky Mountain region, the geologic and geographic diversity of samples have helped the CRC become one of the largest and most heavily used public core repositories in the United States. Many of the boreholes represented in the collection were drilled for energy and mineral exploration, and many of the cores and cuttings were donated to the CRC by private companies in these industries. Some cores and cuttings were collected by the USGS along with other government agencies. Approximately one-half of the cores are slabbed and photographed. More than 18,000 thin sections and a large volume of analytical data from the cores and cuttings are also accessible. A growing collection of digital images of the cores are also becoming available on the CRC Web site Internet http://geology.cr.usgs.gov/crc/.

Development of a Kemp’s ridley sea turtle stock assessment model

USGS Publications Warehouse

Gallaway, Benny J.; Gazey, William; Caillouet, Charles W.; Plotkin, Pamela T.; Abreu Grobois, F. Alberto; Amos, Anthony F.; Burchfield, Patrick M.; Carthy, Raymond R.; Castro Martinez, Marco A.; Cole, John G.; Coleman, Andrew T.; Cook, Melissa; DiMarco, Steven F.; Epperly, Sheryan P.; Fujiwara, Masami; Gamez, Daniel Gomez; Graham, Gary L.; Griffin, Wade L.; Illescas Martinez, Francisco; Lamont, Margaret M.; Lewison, Rebecca L.; Lohmann, Kenneth J.; Nance, James M.; Pitchford, Jonathan; Putman, Nathan F.; Raborn, Scott W.; Rester, Jeffrey K.; Rudloe, Jack J.; Sarti Martinez, Laura; Schexnayder, Mark; Schmid, Jeffrey R.; Shaver, Donna J.; Slay, Christopher; Tucker, Anton D.; Tumlin, Mandy; Wibbels, Thane; Zapata Najera, Blanca M.

2016-01-01

We developed a Kemp’s ridley (Lepidochelys kempii) stock assessment model to evaluate the relative contributions of conservation efforts and other factors toward this critically endangered species’ recovery. The Kemp’s ridley demographic model developed by the Turtle Expert Working Group (TEWG) in 1998 and 2000 and updated for the binational recovery plan in 2011 was modified for use as our base model. The TEWG model uses indices of the annual reproductive population (number of nests) and hatchling recruitment to predict future annual numbers of nests on the basis of a series of assumptions regarding age and maturity, remigration interval, sex ratios, nests per female, juvenile mortality, and a putative ‘‘turtle excluder device effect’’ multiplier starting in 1990. This multiplier was necessary to fit the number of nests observed in 1990 and later. We added the effects of shrimping effort directly, modified by habitat weightings, as a proxy for all sources of anthropogenic mortality. Additional data included in our model were incremental growth of Kemp’s ridleys marked and recaptured in the Gulf of Mexico, and the length frequency of stranded Kemp’s ridleys. We also added a 2010 mortality factor that was necessary to fit the number of nests for 2010 and later (2011 and 2012). Last, we used an empirical basis for estimating natural mortality, on the basis of a Lorenzen mortality curve and growth estimates. Although our model generated reasonable estimates of annual total turtle deaths attributable to shrimp trawling, as well as additional deaths due to undetermined anthropogenic causes in 2010, we were unable to provide a clear explanation for the observed increase in the number of stranded Kemp’s ridleys in recent years, and subsequent disruption of the species’ exponential growth since the 2009 nesting season. Our consensus is that expanded data collection at the nesting beaches is needed and of high priority, and that 2015 be targeted for the next stock assessment to evaluate the 2010 event using more recent nesting and in-water data.

Lunar and Planetary Science XXXV: Lunar Geophysics: Rockin' and a-Reelin'

NASA Technical Reports Server (NTRS)

2004-01-01

This document contained the following topics: The Influence of Tidal, Despinning, and Magma Ocean Cooling Stresses on the Magnitude and Orientation of the Moon#s Early Global Stress Field; New Approach to Development of Moon Rotation Theory; Lunar Core and Tides; Lunar Interior Studies Using Lunar Prospector Line-of-Sight Acceleration Data; A First Crustal Thickness Map of the Moon with Apollo Seismic Data; New Events Discovered in the Apollo Lunar Seismic Data; More Far-Side Deep Moonquake Nests Discovered; and Manifestation of Gas-Dust Streams from Double Stars on Lunar Seismicity.

Ecological factors related to the widespread distribution of sylvatic Rhodnius ecuadoriensis populations in southern Ecuador

PubMed Central

2012-01-01

Background Chagas disease transmission risk is a function of the presence of triatomines in domestic habitats. Rhodnius ecuadoriensis is one of the main vectors implicated in transmission of Trypanosoma cruzi in Ecuador. This triatomine species is present in domestic, peridomestic and sylvatic habitats in the country. To determine the distribution of sylvatic populations of R. ecuadoriensis and the factors related to this distribution, triatomine searches were conducted between 2005 and 2009 in southern Ecuador. Methods Manual triatomine searches were conducted by skilled bug collectors in 23 communities. Sylvatic searched sites were selected by a) directed sampling, where microhabitats were selected by the searchers and b) random sampling, where sampling points where randomly generated. Domiciliary triatomine searches were conducted using the one man-hour method. Natural trypanosome infection was determined by microscopic examination and PCR. Generalized linear models were used to test the effect of environmental factors on the presence of sylvatic triatomines. Results In total, 1,923 sylvatic individuals were collected representing a sampling effort of 751 man-hours. Collected sylvatic triatomines were associated with mammal and bird nests. The 1,219 sampled nests presented an infestation index of 11.9%, a crowding of 13 bugs per infested nest, and a colonization of 80% of the nests. Triatomine abundance was significantly higher in squirrel (Sciurus stramineus) nests located above five meters from ground level and close to the houses. In addition, 8.5% of the 820 examined houses in the same localities were infested with triatomines. There was a significant correlation between R. ecuadoriensis infestation rates found in sylvatic and synanthropic environments within communities (p = 0.012). Parasitological analysis revealed that 64.7% and 15.7% of the sylvatic bugs examined (n = 300) were infected with Trypanosoma cruzi and T. rangeli respectively, and 8% of the bugs presented mixed infections. Conclusions The wide distribution of sylvatic R. ecuadoriensis populations may jeopardize the effectiveness of control campaigns conducted to eliminate domestic populations of this species. Also, the high T. cruzi infection rates found in sylvatic R. ecuadoriensis populations in southern Ecuador could constitute a risk for house re-infestation and persistent long-term Chagas disease transmission in the region. PMID:22243930

Ecological factors related to the widespread distribution of sylvatic Rhodnius ecuadoriensis populations in southern Ecuador.

PubMed

Grijalva, Mario J; Suarez-Davalos, Victoria; Villacis, Anita G; Ocaña-Mayorga, Sofia; Dangles, Olivier

2012-01-13

Chagas disease transmission risk is a function of the presence of triatomines in domestic habitats. Rhodnius ecuadoriensis is one of the main vectors implicated in transmission of Trypanosoma cruzi in Ecuador. This triatomine species is present in domestic, peridomestic and sylvatic habitats in the country. To determine the distribution of sylvatic populations of R. ecuadoriensis and the factors related to this distribution, triatomine searches were conducted between 2005 and 2009 in southern Ecuador. Manual triatomine searches were conducted by skilled bug collectors in 23 communities. Sylvatic searched sites were selected by a) directed sampling, where microhabitats were selected by the searchers and b) random sampling, where sampling points where randomly generated. Domiciliary triatomine searches were conducted using the one man-hour method. Natural trypanosome infection was determined by microscopic examination and PCR. Generalized linear models were used to test the effect of environmental factors on the presence of sylvatic triatomines. In total, 1,923 sylvatic individuals were collected representing a sampling effort of 751 man-hours. Collected sylvatic triatomines were associated with mammal and bird nests. The 1,219 sampled nests presented an infestation index of 11.9%, a crowding of 13 bugs per infested nest, and a colonization of 80% of the nests. Triatomine abundance was significantly higher in squirrel (Sciurus stramineus) nests located above five meters from ground level and close to the houses. In addition, 8.5% of the 820 examined houses in the same localities were infested with triatomines. There was a significant correlation between R. ecuadoriensis infestation rates found in sylvatic and synanthropic environments within communities (p = 0.012). Parasitological analysis revealed that 64.7% and 15.7% of the sylvatic bugs examined (n = 300) were infected with Trypanosoma cruzi and T. rangeli respectively, and 8% of the bugs presented mixed infections. The wide distribution of sylvatic R. ecuadoriensis populations may jeopardize the effectiveness of control campaigns conducted to eliminate domestic populations of this species. Also, the high T. cruzi infection rates found in sylvatic R. ecuadoriensis populations in southern Ecuador could constitute a risk for house re-infestation and persistent long-term Chagas disease transmission in the region.

Nuclear reactor

DOEpatents

Yant, Howard W.; Stinebiser, Karl W.; Anzur, Gregory C.

1977-01-01

A nuclear reactor, particularly a liquid-metal breeder reactor, whose upper internals include outlet modules for channeling the liquid-metal coolant from selected areas of the outlet of the core vertically to the outlet plenum. The modules are composed of a highly-refractory, high corrosion-resistant alloy, for example, INCONEL-718. Each module is disposed to confine and channel generally vertically the coolant emitted from a subplurality of core-component assemblies. Each module has a grid with openings, each opening disposed to receive the coolant from an assembly of the subplurality. The grid in addition serves as a holdown for the assemblies of the corresponding subplurality preventing their excessive ejection upwardly from the core. In the region directly over the core the outlet modules are of such peripheral form that they nest forming a continuum over the core-component assemblies whose outlet coolant they confine. Each subassembly includes a chimney which confines the coolant emitted by its corresponding subassemblies to generally vertical flow between the outlet of the core and the outlet plenum. Each subplurality of assemblies whose emitted coolant is confined by an outlet module includes assemblies which emit lower-temperature coolant, for example, a control-rod assembly, or fertile assemblies, and assemblies which emit coolant of substantially higher temperature, for example, fuel-rod assemblies. The coolants of different temperatures are mixed in the chimneys reducing the effect of stripping (hot-cold temperature fluctuations) on the remainder of the upper internals which are composed typically of AISI-304 or AISI-316 stainless steel.

Capturing haplotypes in germplasm core collections

USDA-ARS?s Scientific Manuscript database

Genomewide data sets of single nucleotide polymorphisms (SNPs) offer great potential to improve ex situ conservation. Two factors impede their use for producing core collections. First, due to the large number of SNPs, the assembly of collections that maximize diversity may be intractable using ex...

American white pelicans breeding in the northern plains: productivity, behavior, movements, and migration

USGS Publications Warehouse

Sovada, Marsha A.; Pietz, Pamela J.; Woodward, Robert O.; Bartos, Alisa J.; Buhl, Deborah A.; Assenmacher, Michael J.

2013-01-01

Nearly half of American white pelicans (Pelecanus erythrorhynchos; hereafter pelicans) are believed to nest in several large colonies in the northern plains, yet few studies had been conducted on pelicans in this region until research began in 2004 to investigate the impact of West Nile virus (WNV) on their chicks. The work reported here focused on two of the largest colonies in the region, at Bitter Lake, South Dakota, and Chase Lake, North Dakota, during 2005–10. Pelicans usually began arriving at these two breeding colonies in early April. Egg-laying began during mid-April and nest initiations continued through May. The number of nests documented at these colonies reached a high of about 15,400 at Bitter Lake and 17,300 at Chase Lake, both in 2006. During 2006–8, annual variation in hatching success was high (40 to 100 percent) at video-monitored nests, averaging 61 percent for 82 nests at Bitter Lake and 57 percent for 88 nests at Chase Lake. Although most nests contained two eggs, of those where two chicks hatched, both chicks survived to the crèche stage (about 15 days old) at only two nests. Severe weather events, disturbance, and siblicide were documented causes of early season (before mid-July) mortalities. In the late season (mid-July to fledging), WNV was the most important factor contributing to chick mortality. Nests were nearly always attended by one adult during incubation and brooding. Adults typically exchanged places at the nest around mid-day in all 3 years, apparently taking advantage of thermals to gain altitude for travel to and from foraging areas. The mean time of exchange differed by about an hour between Bitter Lake (1328 central standard time, CST) and Chase Lake (1434 CST) colonies. During incubation, nearly 3 days often passed between adult nest exchanges; after chicks hatched, exchanges usually occurred daily. Exchanges were more frequent and chicks were fed more often at successful nests than at failed nests. Adult pelicans with satellite transmitters that incorporated a Global Positioning System (GPS) foraged primarily in shallow areas of lakes and semipermanent wetlands. These areas coincide with typical habitats of crayfish, salamanders, and rough fish, which were also the foods most commonly seen in pelican regurgitates at the colonies. Several satellite-tracked pelicans made frequent round trips between their breeding colony and foraging areas, most likely to provision their chicks. Typical distances travelled to foraging sites ranged from 30 kilometers to over 90 kilometers. Return times to the colonies (about 1300 and 1500 CST at Bitter Lake and Chase Lake, respectively) supported the colony difference documented at video-monitored nests. Of 28 pelicans tagged with GPS satellite transmitters in 2005–6, 26 survived the first summer and migrated south during fall. Nineteen of these returned to the breeding region (defined as north of the latitude of South Dakota’s southern border) in at least 1 year during 2006–9; collectively, they returned to the breeding region 33 times. Very few pelicans returned to the colony where they had been tagged; many did not breed and concentrated their activities at wetland complexes in South Dakota and North Dakota, but few tagged pelicans temporally overlapped at specific sites. During 2005–9, tagged pelicans collectively made 56 migratory trips south in the fall. Most wintered in Mexico, near the gulf coast and elsewhere; others wintered in Texas, Louisiana, Mississippi, and Florida. Individuals typically returned to the same general areas each winter. Individuals rarely followed the same migratory path on their way south and north, but they often roughly repeated southerly or northerly routes among years. Ensuring a sustainable population of American white pelicans requires identification and mitigation of known threats. The work described herein has identified WNV and severe weather as important factors that potentially limit reproductive success and recruitment in the northern plains. Managers in this region could assess the influence of such factors on productivity at key colonies by annually obtaining aerial photographs during peak nesting, and estimating numbers of chicks fledged from aerial photographs or ground counts. Banding a subsample of chicks in late June or early July, followed by a sweep for bands at the end of the season, would allow estimation of mortality rates of older chicks (that normally would fledge) and help track the influence of WNV or other mortality factors over time and varying environmental conditions.

Detection of Giardia intestinalis in water samples collected from natural water reservoirs and wells in northern and north-eastern Poland using LAMP, real-time PCR and nested PCR.

PubMed

Lass, Anna; Szostakowska, Beata; Korzeniewski, Krzysztof; Karanis, Panagiotis

2017-10-01

Giardia intestinalis is a protozoan parasite, transmitted to humans and animals by the faecal-oral route, mainly through contaminated water and food. Knowledge about the distribution of this parasite in surface water in Poland is fragmentary and incomplete. Accordingly, 36 environmental water samples taken from surface water reservoirs and wells were collected in Pomerania and Warmia-Masuria provinces, Poland. The 50 L samples were filtered and subsequently analysed with three molecular detection methods: loop-mediated isothermal amplification (LAMP), real-time polymerase chain reaction (real-time PCR) and nested PCR. Of the samples examined, Giardia DNA was found in 15 (42%) samples with the use of LAMP; in 12 (33%) of these samples, Giardia DNA from this parasite was also detected using real-time PCR; and in 9 (25%) using nested PCR. Sequencing of selected positive samples confirmed that the PCR products were fragments of the Giardia intestinalis small subunit rRNA gene. Genotyping using multiplex real-time PCR indicated the presence of assemblages A and B, with the latter predominating. The results indicate that surface water in Poland, as well as water taken from surface wells, may be a source of Giardia strains which are potentially pathogenic for humans. It was also demonstrated that LAMP assay is more sensitive than the other two molecular assays.

Fitness disadvantages to disrupted embryogenesis impose selection against suboptimal nest-site choice by female grass snakes, Natrix natrix (Colubridae).

PubMed

Löwenborg, K; Shine, R; Hagman, M

2011-01-01

Phenotypic traits of hatchling reptiles are strongly influenced by incubation regimes (e.g. of temperature and moisture), suggesting that maternal choice of suitable nest-sites should be under intense selection. Our laboratory incubation of 209 eggs (17 clutches) from wild-caught Swedish grass snakes (Natrix natrix) showed that scale abnormalities (half-scales on one side of the body, often reflecting lateral asymmetry in the number of ribs) occurred more frequently if eggs were incubated under cooler conditions. Especially at low incubation temperatures, individuals with scale asymmetries took longer to hatch than did symmetric conspecifics, were smaller in body length at hatching and were slower in trials of locomotor speed. Anti-predator tactics also covaried with scale asymmetry. These patterns suggest that individuals with asymmetric scales should have lower fitness and hence should rarely survive to adulthood in the wild. We tested this prediction by examining 201 field-collected snakes from museum collections. As predicted, scale asymmetries were seen primarily in small snakes, and rarely in larger animals. We interpret these data to suggest that scale asymmetries in this species offer an index of developmental instability and that fitness disadvantages to disrupted embryogenesis impose selection against suboptimal nest-site choice by females. © 2010 The Authors. Journal of Evolutionary Biology © 2010 European Society For Evolutionary Biology.

User Policies | Center for Cancer Research

Cancer.gov

User Policies 1. Authorship and Acknowledgement: The SAXS Core facility is a CCR resource dedicated to the CCR researchers. But we also make this resource accessible to non-CCR users free of charge. There are three ways to make use the SAXS Core resource. Asking the SAXS Core staff to collect, process and analyze data, and jointly interpret data with your teams. Asking the core staff to collect data and send it to you.

Biological and geochemical data of gravity cores from Mobile Bay, Alabama

USGS Publications Warehouse

Richwine, Kathryn A.; Marot, Marci; Smith, Christopher G.; Osterman, Lisa E.; Adams, C. Scott

2013-01-01

A study was conducted to understand the marine-influenced environments of Mobile Bay, Alabama, by collecting a series of box cores and gravity cores. One gravity core in particular demonstrates a long reference for changing paleoenvironmental parameters in Mobile Bay. Due to lack of abundance of foraminifers and (or) lack of diversity, the benthic foraminiferal data for two of the three gravity cores are not included in the results. The benthic foraminiferal data collected and geochemical analyses in this study provide a baseline for recent changes in the bay.

30 CFR 784.22 - Geologic information.

Code of Federal Regulations, 2014 CFR

2014-07-01

... be collected and analyzed from test borings; drill cores; or fresh, unweathered, uncontaminated... not be removed, samples shall be collected and analyzed from test borings or drill cores to provide...

30 CFR 784.22 - Geologic information.

Code of Federal Regulations, 2013 CFR

2013-07-01

... be collected and analyzed from test borings; drill cores; or fresh, unweathered, uncontaminated... not be removed, samples shall be collected and analyzed from test borings or drill cores to provide...

Evidence of simian retrovirus type D by polymerase chain reaction.

PubMed

Hwa, Christian Z R; Tsai, Sheung Pun; Yee, JoAnn L; Van Rompay, Koen K; Roberts, Jeffrey A

2017-06-01

Over the past few years, there have been reports of finding Simian retrovirus type D (SRV) in macaque colonies where some animals were characterized as antibody positive but virus negative raising questions about how SRV was transmitted or whether there is a variant strain detected by antibody but not polymerase chain reaction (PCR) in current use. We developed a three-round nested PCR assay using degenerate primers targeting the pol gene to detect for SRV serotypes 1-5 and applied this newly validated PCR assay to test macaque DNA samples collected in China from 2010 to 2015. Using the nested PCR assay validated in this study, we found 0.15% of the samples archived on FTA ® cards were positive. The source of SRV infection identified within domestic colonies might have originated from imported macaques. The multiplex nested PCR assay developed here may supplement the current assays for SRV. © 2017 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Food use and nutrition of black ducks nesting in Maine

USGS Publications Warehouse

Reinecke, K.J.; Owen, R.B.

1980-01-01

Based on 32 adult black ducks (Anas rubripes) collected during the nesting seasons of 1974-76, the proportion of macro invertebrates (as aggregate [average] percent of dry weight) in the diet of males, egg-laying females, and postlaying females was 60, 75, and 55%, respectivey. Sample sizes were small, and the differences associated with sex and reproductive condition were not signficant. Molluscs, Isopods, ephemeropteran and odonate nymphs, and coleopteran, trichopteran, and dipteran larvae contributed 74% of the dry weight and 64% of the gross energy ingested. Data from proximate analyses of 9 invertebrate and 9 plant foods were combined with food habits data to estimate the nutrients available to breeding hens. We concluded that females with access to an adequate amount of natural food including invertebrates and the seeds and tubers of aquatic plants would obtain sufficient minerals, protein, and energy for reproduction. Food quality does not appear to limit the density of black ducks nesting in Maine.

Lead concentrations and reproduction in highway-nesting barn swallows

USGS Publications Warehouse

Grue, C.E.; O'Shea, T.J.; Hoffman, D.J.

1984-01-01

Swallows (Hirundo rustica) collected within the right-of-way of a major Maryland highway were greater than those found in Barn Swallows nesting within a rural area. Lead concentrations in the feathers of adults from the highway colony were also greater than Lead concentrations in the carcasses and stomach contents of adult and nestling Barn those of rural adults, but concentrations in the feathers of nestlings from the two locations were similar. Activity of u-aminolevulinic acid dehydratase in red blood cells was lower in highway-nesting adults and their young than in their rural counterparts, although hemoglobin concentrations and hematocrits did not differ. The number of eggs, nestlings, and body weights of the latter at 16-18 days of age were similar in the two colonies, as were body weights of adults from the two areas. These results suggest that contamination of roadside habitats by lead from automotive emissions does not pose a serious hazard to birds that are aerial feeders.

50 CFR 21.23 - Scientific collecting permits.

Code of Federal Regulations, 2013 CFR

2013-10-01

... take, transport, or possess migratory birds, their parts, nests, or eggs for scientific research or... project involved; (4) Name and address of the public, scientific, or educational institution to which all... scientific, or educational institution designated in the permit application within 60 days following the date...

50 CFR 21.23 - Scientific collecting permits.

Code of Federal Regulations, 2012 CFR

2012-10-01

... take, transport, or possess migratory birds, their parts, nests, or eggs for scientific research or... project involved; (4) Name and address of the public, scientific, or educational institution to which all... scientific, or educational institution designated in the permit application within 60 days following the date...

50 CFR 21.23 - Scientific collecting permits.

Code of Federal Regulations, 2014 CFR

2014-10-01

... take, transport, or possess migratory birds, their parts, nests, or eggs for scientific research or... project involved; (4) Name and address of the public, scientific, or educational institution to which all... scientific, or educational institution designated in the permit application within 60 days following the date...

SBML Level 3 package: Groups, Version 1 Release 1

PubMed Central

Hucka, Michael; Smith, Lucian P.

2017-01-01

Summary Biological models often contain components that have relationships with each other, or that modelers want to treat as belonging to groups with common characteristics or shared metadata. The SBML Level 3 Version 1 Core specification does not provide an explicit mechanism for expressing such relationships, but it does provide a mechanism for SBML packages to extend the Core specification and add additional syntactical constructs. The SBML Groups package for SBML Level 3 adds the necessary features to SBML to allow grouping of model components to be expressed. Such groups do not affect the mathematical interpretation of a model, but they do provide a way to add information that can be useful for modelers and software tools. The SBML Groups package enables a modeler to include definitions of groups and nested groups, each of which may be annotated to convey why that group was created, and what it represents. PMID:28187406

Impact of human cytomegalovirus infection UL55-nested polymerase chain reaction method in hematopoietic stem cell transplant donors and recipients.

PubMed

Banan, A A; Yaghobi, R; Ramzi, M; Mehrabani, D

2009-09-01

Human cytomegalovirus (HCMV) is one of the most important and critical viral causes of graft rejection among hematopoietic stem cell transplant (HSCT) recipients. Monitoring of this viral infection has a critical role in the management of HSCT clinical complications. In this retrospective cohort, blood (plasma and buffy coat) and urine samples were collected from 110 HSCT patients and 95 donors pretransplantation and weekly for 100 days posttransplantation. An HCMV-optimized UL55-nested polymerase chain reaction (PCR) method was used to detect HCMV infection. Genotyping of the HCMV UL55 gene was performed for all UL55-nested, PCR-positive samples. HSCT donor and recipient laboratory and clinical data were statistically analyzed using SPSS version 15 software. UL55-nested, PCR-positive results were obtained in 3540/4950 (71.5%), 3634/4950 (73.4%), and 3292/4950 (66.5%) of these plasma, buffy coat, and urine samples, respectively. Twenty-five percent of transplant donors were infected with HCMV. An increase in HCMV infection was observed from pre- to post-HSCT conditions. Detection of the gB2 UL55 genotype in most transplant patient samples suggested the need to examine the possible impact of HCMV UL55 genotypes and HCMV infections among stem cell transplant recipients.

Male hatchling production in sea turtles from one of the world’s largest marine protected areas, the Chagos Archipelago

PubMed Central

Esteban, Nicole; Laloë, Jacques-Olivier; Mortimer, Jeanne A.; Guzman, Antenor N.; Hays, Graeme C.

2016-01-01

Sand temperatures at nest depths and implications for hatchling sex ratios of hawksbill turtles (Eretmochelys imbricata) and green turtles (Chelonia mydas) nesting in the Chagos Archipelago, Indian Ocean are reported and compared to similar measurements at rookeries in the Atlantic and Caribbean. During 2012–2014, temperature loggers were buried at depths and in beach zones representative of turtle nesting sites. Data collected for 12,546 days revealed seasonal and spatial patterns of sand temperature. Depth effects were minimal, perhaps modulated by shade from vegetation. Coolest and warmest temperatures were recorded in the sites heavily shaded in vegetation during the austral winter and in sites partially shaded in vegetation during summer respectively. Overall, sand temperatures were relatively cool during the nesting seasons of both species which would likely produce fairly balanced hatchling sex ratios of 53% and 63% male hatchlings, respectively, for hawksbill and green turtles. This result contrasts with the predominantly high female skew reported for offspring at most rookeries around the globe and highlights how local beach characteristics can drive incubation temperatures. Our evidence suggests that sites characterized by heavy shade associated with intact natural vegetation are likely to provide conditions suitable for male hatchling production in a warming world. PMID:26832230

Nest inundation from sea-level rise threatens sea turtle population viability.

PubMed

Pike, David A; Roznik, Elizabeth A; Bell, Ian

2015-07-01

Contemporary sea-level rise will inundate coastal habitats with seawater more frequently, disrupting the life cycles of terrestrial fauna well before permanent habitat loss occurs. Sea turtles are reliant on low-lying coastal habitats worldwide for nesting, where eggs buried in the sand remain vulnerable to inundation until hatching. We show that saltwater inundation directly lowers the viability of green turtle eggs (Chelonia mydas) collected from the world's largest green turtle nesting rookery at Raine Island, Australia, which is undergoing enigmatic decline. Inundation for 1 or 3 h reduced egg viability by less than 10%, whereas inundation for 6 h reduced viability by approximately 30%. All embryonic developmental stages were vulnerable to mortality from saltwater inundation. Although the hatchlings that emerged from inundated eggs displayed normal physical and behavioural traits, hypoxia during incubation could influence other aspects of the physiology or behaviour of developing embryos, such as learning or spatial orientation. Saltwater inundation can directly lower hatching success, but it does not completely explain the consistently low rates of hatchling production observed on Raine Island. More frequent nest inundation associated with sea-level rise will increase variability in sea turtle hatching success spatially and temporally, due to direct and indirect impacts of saltwater inundation on developing embryos.

Diel spawning behavior of chum salmon in the Columbia River

USGS Publications Warehouse

Tiffan, K.F.; Rondorf, D.W.; Skalicky, J.J.

2005-01-01

We conducted a study during 2003 in a side channel of the Columbia River downstream of Bonneville Dam to describe the diel spawning behavior of wild chum salmon Oncorhynchus keta. We collected observational data on 14 pairs of chum salmon using a dual-frequency identification sonar. Spawners of both genders were observed chasing intruders during nighttime and daytime as nests were constructed. Regardless of diel period, females were engaged in digging to both construct nests and cover eggs, and courting males exhibited the prespawning behavior of tail-crossing. We observed a total of 13 spawning events, of which 9 occurred at night and 4 occurred during the day. Once chum salmon begin nest construction, visual cues are apparently not required for courtship, nest defense, and spawning. To enhance successful spawning, flows from Bonneville Dam during the spawning season were reduced during the day but were sometimes increased at night to pass water and meet power demand (i.e., reverse loading), the assumption being that chum salmon are inactive at night. Our findings show that this assumption was violated. Therefore, reverse loading may disrupt the complex prespawning behavior that occurs both during the day and at night, as well as attract spawners to areas that were dewatered during the day.

Male hatchling production in sea turtles from one of the world’s largest marine protected areas, the Chagos Archipelago

NASA Astrophysics Data System (ADS)

Esteban, Nicole; Laloë, Jacques-Olivier; Mortimer, Jeanne A.; Guzman, Antenor N.; Hays, Graeme C.

2016-02-01

Sand temperatures at nest depths and implications for hatchling sex ratios of hawksbill turtles (Eretmochelys imbricata) and green turtles (Chelonia mydas) nesting in the Chagos Archipelago, Indian Ocean are reported and compared to similar measurements at rookeries in the Atlantic and Caribbean. During 2012-2014, temperature loggers were buried at depths and in beach zones representative of turtle nesting sites. Data collected for 12,546 days revealed seasonal and spatial patterns of sand temperature. Depth effects were minimal, perhaps modulated by shade from vegetation. Coolest and warmest temperatures were recorded in the sites heavily shaded in vegetation during the austral winter and in sites partially shaded in vegetation during summer respectively. Overall, sand temperatures were relatively cool during the nesting seasons of both species which would likely produce fairly balanced hatchling sex ratios of 53% and 63% male hatchlings, respectively, for hawksbill and green turtles. This result contrasts with the predominantly high female skew reported for offspring at most rookeries around the globe and highlights how local beach characteristics can drive incubation temperatures. Our evidence suggests that sites characterized by heavy shade associated with intact natural vegetation are likely to provide conditions suitable for male hatchling production in a warming world.

Exact solution for the quench dynamics of a nested integrable system

NASA Astrophysics Data System (ADS)

Mestyán, Márton; Bertini, Bruno; Piroli, Lorenzo; Calabrese, Pasquale

2017-08-01

Integrable models provide an exact description for a wide variety of physical phenomena. For example nested integrable systems contain different species of interacting particles with a rich phenomenology in their collective behavior, which is the origin of the unconventional phenomenon of spin-charge separation. So far, however, most of the theoretical work in the study of non-equilibrium dynamics of integrable systems has focussed on models with an elementary (i.e. not nested) Bethe ansatz. In this work we explicitly investigate quantum quenches in nested integrable systems, by generalizing the application of the quench action approach. Specifically, we consider the spin-1 Lai-Sutherland model, described, in the thermodynamic limit, by the theory of two different species of Bethe-ansatz particles, each one forming an infinite number of bound states. We focus on the situation where the quench dynamics starts from a simple matrix product state for which the overlaps with the eigenstates of the Hamiltonian are known. We fully characterize the post-quench steady state and perform several consistency checks for the validity of our results. Finally, we provide predictions for the propagation of entanglement and mutual information after the quench, which can be used as signature of the quasi-particle content of the model.

Male hatchling production in sea turtles from one of the world's largest marine protected areas, the Chagos Archipelago.

PubMed

Esteban, Nicole; Laloë, Jacques-Olivier; Mortimer, Jeanne A; Guzman, Antenor N; Hays, Graeme C

2016-02-02

Sand temperatures at nest depths and implications for hatchling sex ratios of hawksbill turtles (Eretmochelys imbricata) and green turtles (Chelonia mydas) nesting in the Chagos Archipelago, Indian Ocean are reported and compared to similar measurements at rookeries in the Atlantic and Caribbean. During 2012-2014, temperature loggers were buried at depths and in beach zones representative of turtle nesting sites. Data collected for 12,546 days revealed seasonal and spatial patterns of sand temperature. Depth effects were minimal, perhaps modulated by shade from vegetation. Coolest and warmest temperatures were recorded in the sites heavily shaded in vegetation during the austral winter and in sites partially shaded in vegetation during summer respectively. Overall, sand temperatures were relatively cool during the nesting seasons of both species which would likely produce fairly balanced hatchling sex ratios of 53% and 63% male hatchlings, respectively, for hawksbill and green turtles. This result contrasts with the predominantly high female skew reported for offspring at most rookeries around the globe and highlights how local beach characteristics can drive incubation temperatures. Our evidence suggests that sites characterized by heavy shade associated with intact natural vegetation are likely to provide conditions suitable for male hatchling production in a warming world.

Nest inundation from sea-level rise threatens sea turtle population viability

PubMed Central

Pike, David A.; Roznik, Elizabeth A.; Bell, Ian

2015-01-01

Contemporary sea-level rise will inundate coastal habitats with seawater more frequently, disrupting the life cycles of terrestrial fauna well before permanent habitat loss occurs. Sea turtles are reliant on low-lying coastal habitats worldwide for nesting, where eggs buried in the sand remain vulnerable to inundation until hatching. We show that saltwater inundation directly lowers the viability of green turtle eggs (Chelonia mydas) collected from the world's largest green turtle nesting rookery at Raine Island, Australia, which is undergoing enigmatic decline. Inundation for 1 or 3 h reduced egg viability by less than 10%, whereas inundation for 6 h reduced viability by approximately 30%. All embryonic developmental stages were vulnerable to mortality from saltwater inundation. Although the hatchlings that emerged from inundated eggs displayed normal physical and behavioural traits, hypoxia during incubation could influence other aspects of the physiology or behaviour of developing embryos, such as learning or spatial orientation. Saltwater inundation can directly lower hatching success, but it does not completely explain the consistently low rates of hatchling production observed on Raine Island. More frequent nest inundation associated with sea-level rise will increase variability in sea turtle hatching success spatially and temporally, due to direct and indirect impacts of saltwater inundation on developing embryos. PMID:26587269

Influence of habitat heterogeneity on distribution, occupancy patterns, and productivity of breeding peregrine falcons in central west Greenland

USGS Publications Warehouse

Wightman, C.; Fuller, Mark R.

2006-01-01

We used occupancy and productivity data collected at 67 cliffs used for nesting from 1972 to 1999 to assess patterns of distribution and nest-site selection in an increasing population of Peregrine Falcons (Falco peregrinus) in central West Greenland. Peregrine Falcons breeding at traditionally occupied cliffs used for nesting had significantly lower variation in productivity and thus these cliffs were better quality sites. This indicates that Peregrine Falcons occupied cliffs according to a pattern of despotic distribution. Falcons breeding at cliffs that were consistently occupied during the breeding season had higher average productivity and lower variation in productivity than falcons at inconsistently occupied cliffs, and thus consistent occupancy also was indicative of cliff quality. Features of high quality habitat included tall cliffs, greater change in elevation from the lowest point within 3 km of the cliff to the cliff top (elevation gain), and protection from weather on the eyrie ledge. Spacing of suitable and occupied cliffs also was an important feature, and the best cliffs generally were more isolated. Increased spacing was likely a mechanism for reducing intraspecific competition. Our results suggest that Peregrine Falcons use a resource defense strategy to compete for better quality habitats and may use spacing and physical features of a nest site to identify good quality breeding habitat.

A catalog of Louisiana's nesting seabird colonies

USGS Publications Warehouse

Fontenot, William R.; Cardiff, Steve W.; DeMay, Richard A.; Dittmann, Donna L.; Hartley, Stephen B.; Jeske, Clinton W.; Lorenz, Nicole; Michot, Thomas C.; Purrington, Robert Dan; Seymour, Michael; Vermillion, William G.

2012-01-01

collective habitats which comprise Louisiana's now fragile coastal zone have taken major hits from commercial/residential, oil & gas, and other industrial development, primarily in the form of coastal erosion exacerbated by these and other factors (Portnoy 1978, Spendelow and Patton 1988, Martin and Lester 1990, Green, et al. 2006). Moreover, during this same period, both geologic subsidence rates (Tornqvist et al. 2008) and mean sea-level (Tornqvist et al. 2002) have increased, along with significant tropical storm activity; all of which have combined to impact available marsh, barrier island, beach, and dredge spoil nesting habitat for waterbirds, especially seabirds, throughout the coastal zone of Louisiana. The primary objective of this publication is to detail those coastal Louisiana colonial seabird nesting sites for which we have reasonably accurate data, in a tabular, site-by-site format. All major survey (1976-2008) data of site-by-site seabird species counts, as well as several smaller data sets, referred to in the site history tables as “miscellaneous observations” obtained during the May-June seabird breeding period, are included. It is our hope that these data will provide a dependable foundation from which future colonial seabird nesting surveys might be planned and carried out, as well as showcase the importance of coastal Louisiana's seabird rookeries, and contribute to their conservation.

Seasonal abundance and potential of Japanese encephalitis virus infection in mosquitoes at the nesting colony of ardeid birds, Thailand.

PubMed

Changbunjong, Tanasak; Weluwanarak, Thekhawet; Taowan, Namaoy; Suksai, Parut; Chamsai, Tatiyanuch; Sedwisai, Poonyapat

2013-03-01

To investigate the abundance and seasonal dynamics of mosquitoes, and to detect Japanese encephalitis virus (JEV) in these mosquitoes at the nesting colony of ardeid birds. Mosquitoes were collected bimonthly from July 2009 to May 2010 by Centers for Disease Control. Light traps and dry ice, as a source of CO2, were employed to attract mosquitoes. Mosquitoes were first identified, pooled into groups of upto 50 mosquitoes by species, and tested for JEV infection by viral isolation and reverse transcriptase polymerase chain reaction. A total of 20 370 mosquitoes comprising 14 species in five genera were collected. The five most abundant mosquito species collected were Culex tritaeniorhynchus (95.46%), Culex vishnui (2.68%), Culex gelidus (0.72%), Anopheles peditaeniatus (0.58%) and Culex quinquefasciatus (0.22%). Mosquito peak densities were observed in July. All of 416 mosquito pools were negative for JEV. This study provides new information about mosquito species and status of JEV infection in mosquitoes in Thailand. Further study should be done to continue a close survey for the presence of this virus in the ardeid birds.

Descriptions and preliminary report on sediment cores from the southwest coastal area, Everglades National Park, Florida

USGS Publications Warehouse

Wingard, G. Lynn; Cronin, Thomas M.; Holmes, Charles W.; Willard, Debra A.; Budet, Carlos A.; Ortiz, Ruth E.

2005-01-01

Sediment cores were collected from five locations in the southwest coastal area of Everglades National Park, Florida, in May 2004 for the purpose of determining the ecosystem history of the area and the impacts of changes in flow through the Shark River Slough. An understanding of natural cycles of change prior to significant human disturbance allows land managers to set realistic performance measures and targets for salinity and other water quality and quantity quality measures. Preliminary examination of the cores indicates significant changes have taken place over the last 1000-2000 years. The cores collected from the inner bays - the most landward bays - are distinctly different from other estuarine sediment cores examined in Florida Bay and Biscayne Bay. Peats in the inner-bay cores from Big Lostmans Bay, Broad River Bay, and Tarpon Bay were deposited at least 1000 years before present (BP) based on radiocarbon analyses. The peats are overlain by poorly sorted organic muds and sands containing species indicative of deposition in a freshwater to very low salinity environment. The Alligator Bay core, the most northern inner-bay core, is almost entirely sand; no detailed faunal analyses or radiometric dating has been completed on this core. The Roberts River core, taken from the mouth of the River where it empties into Whitewater Bay, is lithologically and faunally similar to previously examined cores from Biscayne and Florida Bays; however, the basal unit was deposited ~2000 years before the present based on radiocarbon analyses. A definite trend of increasing salinity over time is seen in the Roberts River core, from sediments representing a terrestrially dominated freshwater environment at the bottom of the core to those representing an estuarine environment with a strong freshwater influence at the top. The changes seen at Roberts River could represent a combination of factors including rising sea-level and changes in freshwater supply, but the timing and extent of the changes needs to be determined. The preliminary information on the cores collected in 2004 will be combined with data from cores collected in July 2005. The 2005 cores were collected along transects moving from the inner bays out towards the coast. These transects, combining information from the 2004 and 2005 cores, will allow us to examine long term trends in freshwater supply, sea-level rise, and potentially the impact of storms on the coastal ecosystem.

Delineating the joint hierarchical structure of clinical and personality disorders in an outpatient psychiatric sample.

PubMed

Forbes, Miriam K; Kotov, Roman; Ruggero, Camilo J; Watson, David; Zimmerman, Mark; Krueger, Robert F

2017-11-01

A large body of research has focused on identifying the optimal number of dimensions - or spectra - to model individual differences in psychopathology. Recently, it has become increasingly clear that ostensibly competing models with varying numbers of spectra can be synthesized in empirically derived hierarchical structures. We examined the convergence between top-down (bass-ackwards or sequential principal components analysis) and bottom-up (hierarchical agglomerative cluster analysis) statistical methods for elucidating hierarchies to explicate the joint hierarchical structure of clinical and personality disorders. Analyses examined 24 clinical and personality disorders based on semi-structured clinical interviews in an outpatient psychiatric sample (n=2900). The two methods of hierarchical analysis converged on a three-tier joint hierarchy of psychopathology. At the lowest tier, there were seven spectra - disinhibition, antagonism, core thought disorder, detachment, core internalizing, somatoform, and compulsivity - that emerged in both methods. These spectra were nested under the same three higher-order superspectra in both methods: externalizing, broad thought dysfunction, and broad internalizing. In turn, these three superspectra were nested under a single general psychopathology spectrum, which represented the top tier of the hierarchical structure. The hierarchical structure mirrors and extends upon past research, with the inclusion of a novel compulsivity spectrum, and the finding that psychopathology is organized in three superordinate domains. This hierarchy can thus be used as a flexible and integrative framework to facilitate psychopathology research with varying levels of specificity (i.e., focusing on the optimal level of detailed information, rather than the optimal number of factors). Copyright © 2017 Elsevier Inc. All rights reserved.

Bringing home the trash: do colony-based differences in foraging distribution lead to increased plastic ingestion in Laysan albatrosses?

PubMed

Young, Lindsay C; Vanderlip, Cynthia; Duffy, David C; Afanasyev, Vsevolod; Shaffer, Scott A

2009-10-28

When searching for prey, animals should maximize energetic gain, while minimizing energy expenditure by altering their movements relative to prey availability. However, with increasing amounts of marine debris, what once may have been 'optimal' foraging strategies for top marine predators, are leading to sub-optimal diets comprised in large part of plastic. Indeed, the highly vagile Laysan albatross (Phoebastria immutabilis) which forages throughout the North Pacific, are well known for their tendency to ingest plastic. Here we examine whether Laysan albatrosses nesting on Kure Atoll and Oahu Island, 2,150 km apart, experience different levels of plastic ingestion. Twenty two geolocators were deployed on breeding adults for up to two years. Regurgitated boluses of undigestable material were also collected from chicks at each site to compare the amount of plastic vs. natural foods. Chicks from Kure Atoll were fed almost ten times the amount of plastic compared to chicks from Oahu despite boluses from both colonies having similar amounts of natural food. Tracking data indicated that adults from either colony did not have core overlapping distributions during the early half of the breeding period and that adults from Kure had a greater overlap with the putative range of the Western Garbage Patch corroborating our observation of higher plastic loads at this colony. At-sea distributions also varied throughout the year suggesting that Laysan albatrosses either adjusted their foraging behavior according to constraints on time away from the nest or to variation in resources. However, in the non-breeding season, distributional overlap was greater indicating that the energy required to reach the foraging grounds was less important than the total energy available. These results demonstrate how a marine predator that is not dispersal limited alters its foraging strategy throughout the reproductive cycle to maximize energetic gain and how this has led to differences in plastic ingestion.

Bringing Home the Trash: Do Colony-Based Differences in Foraging Distribution Lead to Increased Plastic Ingestion in Laysan Albatrosses?

PubMed Central

Young, Lindsay C.; Vanderlip, Cynthia; Duffy, David C.; Afanasyev, Vsevolod; Shaffer, Scott A.

2009-01-01

When searching for prey, animals should maximize energetic gain, while minimizing energy expenditure by altering their movements relative to prey availability. However, with increasing amounts of marine debris, what once may have been ‘optimal’ foraging strategies for top marine predators, are leading to sub-optimal diets comprised in large part of plastic. Indeed, the highly vagile Laysan albatross (Phoebastria immutabilis) which forages throughout the North Pacific, are well known for their tendency to ingest plastic. Here we examine whether Laysan albatrosses nesting on Kure Atoll and Oahu Island, 2,150 km apart, experience different levels of plastic ingestion. Twenty two geolocators were deployed on breeding adults for up to two years. Regurgitated boluses of undigestable material were also collected from chicks at each site to compare the amount of plastic vs. natural foods. Chicks from Kure Atoll were fed almost ten times the amount of plastic compared to chicks from Oahu despite boluses from both colonies having similar amounts of natural food. Tracking data indicated that adults from either colony did not have core overlapping distributions during the early half of the breeding period and that adults from Kure had a greater overlap with the putative range of the Western Garbage Patch corroborating our observation of higher plastic loads at this colony. At-sea distributions also varied throughout the year suggesting that Laysan albatrosses either adjusted their foraging behavior according to constraints on time away from the nest or to variation in resources. However, in the non-breeding season, distributional overlap was greater indicating that the energy required to reach the foraging grounds was less important than the total energy available. These results demonstrate how a marine predator that is not dispersal limited alters its foraging strategy throughout the reproductive cycle to maximize energetic gain and how this has led to differences in plastic ingestion. PMID:19862322

Combined VSWIR/TIR Products Overview: Issues and Examples

NASA Technical Reports Server (NTRS)

Knox, Robert G.

2010-01-01

The presentation provides a summary of VSWIR data collected at 19-day intervals for most areas. TIR data was collected both day and night on a 5-day cycle (more frequently at higher latitudes), the TIR swath is four times as wide as VSWIR, and the 5-day orbit repeat is approximate. Topics include nested swath geometry for reference point design and coverage simulations for sample FLUXNET tower sites. Other points examined include variation in latitude for revisit frequency, overpass times, and TIR overlap geometry and timing between VSWIR data collections.

78 FR 71617 - Agency Information Collection Activities: Proposed Collection; Comment Request

Federal Register 2010, 2011, 2012, 2013, 2014

2013-11-29

... agencies that have prescription drug programs are required to perform prospective and retrospective drug... study to validate the core competency set among the workforce; (2) establishing the core competency set...

Molecular detection of a novel paramyxovirus in fruit bats from Indonesia

PubMed Central

2012-01-01

Background Fruit bats are known to harbor zoonotic paramyxoviruses including Nipah, Hendra, and Menangle viruses. The aim of this study was to detect the presence of paramyxovirus RNA in fruit bats from Indonesia. Methods RNA samples were obtained from the spleens of 110 fruit bats collected from four locations in Indonesia. All samples were screened by semi-nested broad spectrum reverse transcription PCR targeting the paramyxovirus polymerase (L) genes. Results Semi-nested reverse transcription PCR detected five previously unidentified paramyxoviruses from six fruit bats. Phylogenetic analysis showed that these virus sequences were related to henipavirus or rubulavirus. Conclusions This study indicates the presence of novel paramyxoviruses among fruit bat populations in Indonesia. PMID:23082748

Elucidating spatially explicit behavioral landscapes in the Willow Flycatcher

USGS Publications Warehouse

Bakian, Amanda V.; Sullivan, Kimberly A.; Paxton, Eben H.

2012-01-01

Animal resource selection is a complex, hierarchical decision-making process, yet resource selection studies often focus on the presence and absence of an animal rather than the animal's behavior at resource use locations. In this study, we investigate foraging and vocalization resource selection in a population of Willow Flycatchers, Empidonax traillii adastus, using Bayesian spatial generalized linear models. These models produce “behavioral landscapes” in which space use and resource selection is linked through behavior. Radio telemetry locations were collected from 35 adult Willow Flycatchers (n = 14 males, n = 13 females, and n = 8 unknown sex) over the 2003 and 2004 breeding seasons at Fish Creek, Utah. Results from the 2-stage modeling approach showed that habitat type, perch position, and distance from the arithmetic mean of the home range (in males) or nest site (in females) were important factors influencing foraging and vocalization resource selection. Parameter estimates from the individual-level models indicated high intraspecific variation in the use of the various habitat types and perch heights for foraging and vocalization. On the population level, Willow Flycatchers selected riparian habitat over other habitat types for vocalizing but used multiple habitat types for foraging including mountain shrub, young riparian, and upland forest. Mapping of observed and predicted foraging and vocalization resource selection indicated that the behavior often occurred in disparate areas of the home range. This suggests that multiple core areas may exist in the home ranges of individual flycatchers, and demonstrates that the behavioral landscape modeling approach can be applied to identify spatially and behaviorally distinct core areas. The behavioral landscape approach is applicable to a wide range of animal taxa and can be used to improve our understanding of the spatial context of behavior and resource selection.

Performance of ARCHITECT HCV core antigen test with specimens from US plasma donors and injecting drug users.

PubMed

Mixson-Hayden, Tonya; Dawson, George J; Teshale, Eyasu; Le, Thao; Cheng, Kevin; Drobeniuc, Jan; Ward, John; Kamili, Saleem

2015-05-01

Hepatitis C virus (HCV) core antigen is a serological marker of current HCV infection. The aim of this study was mainly to evaluate the performance characteristics of the ARCHITECT HCV core antigen assay with specimens from US plasma donors and injecting drug users. A total of 551 serum and plasma samples with known anti-HCV and HCV RNA status were tested for HCV core antigen using the Abbott ARCHITECT HCV core antigen test. HCV core antigen was detectable in 100% of US plasma donor samples collected during the pre-seroconversion phase of infection (anti-HCV negative/HCV RNA positive). Overall sensitivity of the HCV core antigen assay was 88.9-94.3% in samples collected after seroconversion. The correlation between HCV core antigen and HCV RNA titers was 0.959. HCV core antigen testing may be reliably used to identify current HCV infection. Published by Elsevier B.V.

Leadership Role Identity Construction in Women's Leadership Development Programs

ERIC Educational Resources Information Center

Brue, Krystal L.; Brue, Shawn A.

2018-01-01

This article analyzes women's only leadership development training to determine how leadership roles are conceptualized and implemented, how women independently and collectively construct new leadership role identities, and how leadership identities are retained post training. Themes of nested validation, accepting the belonging narrative,…

Late Holocene sedimentation in coastal areas of the northwestern Ross Sea (Antarctica)

NASA Astrophysics Data System (ADS)

Colizza, Ester; Finocchiaro, Furio; Kuhn, Gerhard; Langone, Leonardo; Melis, Romana; Mezgec, Karin; Severi, Mirko; Traversi, Rita; Udisti, Roberto; Stenni, Barbara; Braida, Martina

2013-04-01

Sediment cores and box cores collected in two coastal areas of the northwestern Ross Sea (Antarctica) highlight the possibility of studying the Late Holocene period in detail. In this work we propose a study on two box cores and two gravity cores collected in the Cape Hallett and Wood Bay areas during the 2005 PNRA oceanographic cruise. The two sites are feed by Eastern Antarctic Ice Shelf (EAIS) and previous studies have highlighted a complex postglacial sedimentary sequence, also influenced by local morphology. This study is performed within the framework of the PNRA-ESF PolarCLIMATE HOLOCLIP (Holocene climate variability at high-southern latitudes: an integrated perspective) Project. The data set includes: magnetic susceptibility, X-ray analyses, 210Pb, 14C dating, diatoms and foraminifera assemblages, organic carbon, and grain-size analyses. Furthermore XRF core scanner analyses, colour analysis from digital images, and major, minor and trace element concentration analyses (ICP-AES) are performed. Data show that the box core and upper core sediments represent a very recent sedimentation in which it is possible to observe the parameter variability probably linked to climate variability/changes: these variation will be compared with isotopic record form ice cores collected form the same Antarctic sector.

76 FR 79703 - Notice of Submission of Proposed Information Collection to OMB; Emergency Comment Request...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-12-22

... Building Under the Transformation Initiative (OneCPD and Core Curricula) AGENCY: Office of the Chief... Transformation Initiative (OneCPD and Core Curricula). Description of Information Collection: The Narratives...

Investment in testes, sperm-duct glands and lipid reserves differs between male morphs but not between early and late breeding season in Pomatoschistus minutus.

PubMed

Kvarnemo, C; Svensson, O; Manson, W

2010-05-01

This study of the sand goby Pomatoschistus minutus, a nest-holding fish with paternal care, focused on gonadal investment among males of different sizes collected early and late in the breeding season. All males caught at the nest had breeding colour, whereas trawl-caught fish consisted of males both with and without colour. The absence or presence of breeding colour was a good predictor of testes investment. Compared to males with breeding colour, males without colour were smaller in body size but had extraordinarily large testes. In absolute terms, testes mass of males without breeding colour was on average 3.4 times greater than those of males with breeding colour. Since small colourless males are known to reproduce as sneaker males, this heavy investment in testes probably reflects that they are forced to spawn under sperm competition. Contrary to testes size, sperm-duct glands were largest among males with breeding colour. These glands produce mucins used for making sperm-containing mucous trails that males place in the nest before and during spawning. Since both sneakers and nest-holders potentially could benefit from having large glands, this result is intriguing. Yet, high mucus production may be more important for nest-holders, because it also protects developing embryos from infections. There was no significant effect of season on body size, testes or sperm-duct glands size, but colourless males tended to be less common late in the season. Possibly this may indicate that individual small colourless males develop into their more colourful counterparts within the breeding season.

Seasonal variation in plasma catecholamines and adipose tissue lipolysis in adult female green sea turtles (Chelonia mydas).

PubMed

Hamann, Mark; Limpus, Colin J; Whittier, Joan M

2003-02-15

We investigated three aspects of potential interrenal regulation of reproduction in female green sea turtles, Chelonia mydas. First, seasonal trends in plasma catecholamines were examined from female C. mydas at different stages of their reproductive cycles. Second, variation in catecholamine levels during a nesting season were analysed in relation to restraint time, and ecological variables such as nesting habitat, body size, and reproductive investment. Third, catecholamine and corticosterone (CORT) induced lipolysis was investigated with adipose tissue collected from gravid green turtles, using in vitro incubations. Plasma epinephrine (EPI) was lowest in non-vitellogenic (1.55 +/- 0.26 ng/ml) and post-breeding (1.57 +/- 0.22 ng/ml) females, and highest in courting females (2.87 +/- 0.28). Concentrations of norepinephrine (NE) and EPI were relatively constant throughout a nesting season, and not significantly related to restraint time, reproductive investment or nesting habitat. In vitro concentrations of CORT (>3 ng/ml) and NE (2 ng/ml) induced significant release of glycerol after 6h of incubation. Epinephrine tended to induce an antilipolytic affect at low concentrations (0.25 ng/ml) and a net lipolytic response at higher concentrations (>1 ng/ml). Our data suggest that EPI may play a role in regulating body condition during vitellogenesis, and maintaining energy stores during prolonged aphagia during courtship and nesting in female green sea turtles. Furthermore, we provide preliminary evidence that suggests that catecholamine production may be either down regulated or de-sensitised in gravid female C. mydas. Copyright 2003 Elsevier Science (USA)

The Prevalence of Pneumocystis jiroveci in Bronchoalveolar Lavage Specimens of Lung Transplant Recipients Examined by the Nested PCR.

PubMed

Izadi, Morteza; Jonaidi Jafari, Nematollah; Sadraei, Javid; Mahmoodzadeh Poornaki, Abbas; Rezavand, Babak; Zarrinfar, Hossein; Abdi, Jahangir; Mohammadi, Younes

2014-12-01

The use of immune suppressive drugs for organ transplant recipients predisposes them to opportunistic infections, especially by fungal agents. Pneumocystis jiroveci, as an opportunistic pathogen, endangers the patients' life in those with immune system disorders. Early detection of latent Pneumocystis infection in susceptible patients may help choose the optimal treatment for these patients. The aim of this study was to identify and determine the colonization of latent P. jiroveci infection among lung transplant recipients. This cross-sectional descriptive study was conducted on lung transplant recipients. Bronchoalveolar lavage (BAL) specimens were collected from 32 patients undergoing bronchoscopy. The samples were aseptically homogenized by 10 mM dithiothreitol, and their DNA was extracted. The mtLSUrRNA gene of P. jiroveci was amplified using nested PCR in two stages. Nested PCR was performed using external primers of pAZ-102-E and pAZ102-H followed by using the PCR product of the first stage and internal primers of pAZ-102-E and pAZ102-L2. The genome of P. jiroveci was revealed by a 346 bp PCR product in the initial amplification and a 120 bp product in the nested PCR. The results showed that seven BAL specimens (21.9%) from lung transplant recipients were positive for P. jiroveci. In molecular epidemiology studies, nested PCR has higher sensitivity than PCR. Results of this study support the colonization of P. jiroveci in patients receiving lung transplantation. Patients who are carriers of P. jiroveci are at a higher risk of P. jiroveci pneumonia.

Pods: a Powder Delivery System for Mars In-situ Organic, Mineralogic and Isotopic Analysis Instruments

NASA Technical Reports Server (NTRS)

Saha, C. P.; Bryson, C. E.; Sarrazin, P.; Blake, D. F.

2005-01-01

Many Mars in situ instruments require fine-grained high-fidelity samples of rocks or soil. Included are instruments for the determination of mineralogy as well as organic and isotopic chemistry. Powder can be obtained as a primary objective of a sample collection system (e.g., by collecting powder as a surface is abraded by a rotary abrasion tool (RAT)), or as a secondary objective (e.g, by collecting drill powder as a core is drilled). In the latter case, a properly designed system could be used to monitor drilling in real time as well as to deliver powder to analytical instruments which would perform complementary analyses to those later performed on the intact core. In addition, once a core or other sample is collected, a system that could transfer intelligently collected subsamples of power from the intact core to a suite of analytical instruments would be highly desirable. We have conceptualized, developed and tested a breadboard Powder Delivery System (PoDS) intended to satisfy the collection, processing and distribution requirements of powder samples for Mars in-situ mineralogic, organic and isotopic measurement instruments.

Detection of Plasmodium falciparum DNA in saliva samples stored at room temperature: potential for a non-invasive saliva-based diagnostic test for malaria.

PubMed

Mfuh, Kenji O; Tassi Yunga, Samuel; Esemu, Livo F; Bekindaka, Obase Ngemani; Yonga, Jessica; Djontu, Jean Claude; Mbakop, Calixt D; Taylor, Diane W; Nerurkar, Vivek R; Leke, Rose G F

2017-10-27

Current malaria diagnostic methods require blood collection, that may be associated with pain and the risk of transmitting blood-borne pathogens, and often create poor compliance when repeated sampling is needed. On the other hand, the collection of saliva is minimally invasive; but saliva has not been widely used for the diagnosis of malaria. The aim of this study was to evaluate the diagnostic performance of saliva collected and stored at room temperature using the OMNIgene ® •ORAL kit for diagnosing Plasmodium falciparum malaria. Paired blood and saliva samples were collected from 222 febrile patients in Cameroon. Saliva samples were collected using the OMNIgene ® •ORAL (OM-501) kit and stored at room temperature for up to 13 months. Thick blood film microscopy (TFM) was used to detect P. falciparum blood-stage parasites in blood. Detection of P. falciparum DNA in blood and saliva was based on amplification of the multi-copy 18 s rRNA gene using the nested-polymerase chain reaction (nPCR). Prevalence of malaria detected by TFM, nPCR-saliva and nPCR-blood was 22, 29, and 35%, respectively. Using TFM as the gold standard, the sensitivity of nPCR-saliva and nPCR-blood in detecting P. falciparum was 95 and 100%, respectively; with corresponding specificities of 93 and 87%. When nPCR-blood was used as gold standard, the sensitivity of nPCR-saliva and microscopy was 82 and 68%, respectively; whereas, the specificity was 99 and 100%, respectively. Nested PCR-saliva had a very good agreement with both TFM (kappa value 0.8) and blood PCR (kappa value 0.8). At parasitaemia > 10,000 parasites/µl of blood, the sensitivity of nPCR-saliva was 100%. Nested PCR-saliva detected 16 sub-microscopic malaria infections. One year after sample collection, P. falciparum DNA was detected in 80% of saliva samples stored at room temperature. Saliva can potentially be used as an alternative non-invasive sample for the diagnosis of malaria and the OMNIgene ® •ORAL kit is effective at transporting and preserving malaria parasite DNA in saliva at room temperature. The technology described in this study for diagnosis of malaria in resource-limited countries adds on to the armamentarium needed for elimination of malaria.