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Sample records for non-equilibrium dissociation approach

  1. Optimization of an oligonucleotide microchip for microbial identification studies: a non-equilibrium dissociation approach

    NASA Technical Reports Server (NTRS)

    Liu, W. T.; Mirzabekov, A. D.; Stahl, D. A.

    2001-01-01

    The utility of a high-density oligonucleotide microarray (microchip) for identifying strains of five closely related bacilli (Bacillus anthracis, Bacillus cereus, Bacillus mycoides, Bacillus medusa and Bacillus subtilis) was demonstrated using an approach that compares the non-equilibrium dissociation rates ('melting curves') of all probe-target duplexes simultaneously. For this study, a hierarchical set of 30 oligonucleotide probes targeting the 16S ribosomal RNA of these bacilli at multiple levels of specificity (approximate taxonomic ranks of domain, kingdom, order, genus and species) was designed and immobilized in a high-density matrix of gel pads on a glass slide. Reproducible melting curves for probes with different levels of specificity were obtained using an optimized salt concentration. Clear discrimination between perfect match (PM) and mismatch (MM) duplexes was achieved. By normalizing the signals to an internal standard (a universal probe), a more than twofold discrimination (> 2.4x) was achieved between PM and 1-MM duplexes at the dissociation temperature at which 50% of the probe-target duplexes remained intact. This provided excellent differentiation among representatives of different Bacillus species, both individually and in mixtures of two or three. The overall pattern of hybridization derived from this hierarchical probe set also provided a clear 'chip fingerprint' for each of these closely related Bacillus species.

  2. Optimization of an oligonucleotide microchip for microbial identification studies: a non-equilibrium dissociation approach

    NASA Technical Reports Server (NTRS)

    Liu, W. T.; Mirzabekov, A. D.; Stahl, D. A.

    2001-01-01

    The utility of a high-density oligonucleotide microarray (microchip) for identifying strains of five closely related bacilli (Bacillus anthracis, Bacillus cereus, Bacillus mycoides, Bacillus medusa and Bacillus subtilis) was demonstrated using an approach that compares the non-equilibrium dissociation rates ('melting curves') of all probe-target duplexes simultaneously. For this study, a hierarchical set of 30 oligonucleotide probes targeting the 16S ribosomal RNA of these bacilli at multiple levels of specificity (approximate taxonomic ranks of domain, kingdom, order, genus and species) was designed and immobilized in a high-density matrix of gel pads on a glass slide. Reproducible melting curves for probes with different levels of specificity were obtained using an optimized salt concentration. Clear discrimination between perfect match (PM) and mismatch (MM) duplexes was achieved. By normalizing the signals to an internal standard (a universal probe), a more than twofold discrimination (> 2.4x) was achieved between PM and 1-MM duplexes at the dissociation temperature at which 50% of the probe-target duplexes remained intact. This provided excellent differentiation among representatives of different Bacillus species, both individually and in mixtures of two or three. The overall pattern of hybridization derived from this hierarchical probe set also provided a clear 'chip fingerprint' for each of these closely related Bacillus species.

  3. Molecular dynamics study of CO2 hydrate dissociation: Fluctuation-dissipation and non-equilibrium analysis

    NASA Astrophysics Data System (ADS)

    English, Niall J.; Clarke, Elaine T.

    2013-09-01

    Equilibrium and non-equilibrium molecular dynamics (MD) simulations have been performed to investigate thermal-driven break-up of planar CO2 hydrate interfaces in liquid water at 300-320 K. Different guest compositions, at 85%, 95%, and 100% of maximum theoretical occupation, led to statistically-significant differences in the observed initial dissociation rates. The melting temperatures of each interface were estimated, and dissociation rates were observed to be strongly dependent on temperature, with higher dissociation rates at larger over-temperatures vis-à-vis melting. A simple coupled mass and heat transfer model developed previously was applied to fit the observed dissociation profiles, and this helps to identify clearly two distinct régimes of break-up; a second well-defined region is essentially independent of composition and temperature, in which the remaining nanoscale, de facto two-dimensional system's lattice framework is intrinsically unstable. From equilibrium MD of the two-phase systems at their melting point, the relaxation times of the auto-correlation functions of fluctuations in number of enclathrated guest molecules were used as a basis for comparison of the variation in the underlying, non-equilibrium, thermal-driven dissociation rates via Onsager's hypothesis, and statistically significant differences were found, confirming the value of a fluctuation-dissipation approach in this case.

  4. Experimental approaches for studying non-equilibrium atmospheric plasma jets

    SciTech Connect

    Shashurin, A.; Keidar, M.

    2015-12-15

    This work reviews recent research efforts undertaken in the area non-equilibrium atmospheric plasma jets with special focus on experimental approaches. Physics of small non-equilibrium atmospheric plasma jets operating in kHz frequency range at powers around few Watts will be analyzed, including mechanism of breakdown, process of ionization front propagation, electrical coupling of the ionization front with the discharge electrodes, distributions of excited and ionized species, discharge current spreading, transient dynamics of various plasma parameters, etc. Experimental diagnostic approaches utilized in the field will be considered, including Rayleigh microwave scattering, Thomson laser scattering, electrostatic streamer scatterers, optical emission spectroscopy, fast photographing, etc.

  5. Microscopic versus macroscopic approaches to non-equilibrium systems

    NASA Astrophysics Data System (ADS)

    Derrida, Bernard

    2011-01-01

    The one-dimensional symmetric simple exclusion process (SSEP) is one of the very few exactly soluble models of non-equilibrium statistical physics. It describes a system of particles which diffuse with hard core repulsion on a one-dimensional lattice in contact with two reservoirs of particles at unequal densities. The goal of this paper is to review the two main approaches which lead to the exact expression of the large deviation functional of the density of the SSEP in its steady state: a microscopic approach (based on the matrix product ansatz and an additivity property) and a macroscopic approach (based on the macroscopic fluctuation theory of Bertini, De Sole, Gabrielli, Jona-Lasinio and Landim).

  6. Developments in Power efficient dissociation of CO2 using non-equilibrium plasma activation

    NASA Astrophysics Data System (ADS)

    van de Sanden, Richard

    2013-09-01

    Sustainable energy generation by means of, either photovoltaic conversion, concentrated solar power or wind, will certainly form a significant part of the energy mix in 2025. The intermittency as well as the temporal variation and the regional spread of this energy source, however, requires a means to store and transport energy on a large scale. In this presentation the means of storage will be addressed of sustainable energy transformed into fuels and the prominent role plasma science and technology can play in this great challenge. The storage of sustainable energy in these so called solar fuels, e.g. hydrocarbons and alcohols, by means of artificial photosynthesis from the feedstock CO2 and H2O, will enable a CO2 neutral power generation infrastructure, which is close to the present infrastructure based on fossil fuels. The challenge will be to achieve power efficient dissociation of CO2 or H2O or both, after which traditional chemical conversion (Fisher-Tropsch, Sabatier, etc.) towards fuels can take place. A promising route is the dissociation or activation of CO2 by means of plasma, possible combined with catalysis. Taking advantage of non-equilibrium plasma conditions to reach optimal energy efficiency we have started a solar fuels program at the beginning of 2012 focusing on CO2 plasma dissociation into CO and O2. The plasma is generated in a low loss microwave cavity with microwave powers up to 10 kW using a supersonic expansion to quench the plasma and prevent vibrational-translational relaxation losses. New ideas on the design of the facility and results on power efficient conversion (more then 50%) of large CO2 flows (up to 75 standard liter per minute with 11% conversion) at low gas temperatures will be presented.

  7. Identification of non-specific hybridization using an empirical equation fitted to non-equilibrium dissociation curves

    PubMed Central

    Baushke, Samuel W; Stedtfeld, Robert D; Tourlousse, Dieter M; Ahmad, Farhan; Wick, Lukas M; Gulari, Erdogan; Tiedje, James M; Hashsham, Syed A

    2012-01-01

    Non-equilibrium dissociation curves (NEDCs) have the potential to identify non-specific hybridizations on high throughput, diagnostic microarrays. We report a simple method for identification of non-specific signals by using a new parameter that does not rely on comparison of perfect match and mismatch dissociations. The parameter is the ratio of specific dissociation temperature (Td-w) to theoretical melting temperature (Tm) and can be obtained by automated fitting of a four-parameter, sigmoid, empirical equation to the thousands of curves generated in a typical experiment. The curves fit perfect match NEDCs from an initial experiment with an R2 of 0.998±0.006 and root mean square of 108±91 fluorescent units. Receiver operating characteristic curve analysis showed low temperature hybridization signals (20–48 °C) to be as effective as area under the curve as primary data filters. Evaluation of three datasets that target 16S rRNA and functional genes with varying degrees of target sequence similarity showed that filtering out hybridizations with Td-w/Tm < 0.78 greatly reduced false positive results. In conclusion, Td-w/Tm successfully screened many non-specific hybridizations that could not be identified using single temperature signal intensities alone, while the empirical modeling allowed a simplified approach to the high throughput analysis of thousands of NEDCs. PMID:22537822

  8. Approach to non-equilibrium behaviour in quantum field theory

    SciTech Connect

    Kripfganz, J.; Perlt, H.

    1989-05-01

    We study the real-time evolution of quantum field theoretic systems in non-equilibrium situations. Results are presented for the example of scalar /lambda//phi//sup 4/ theory. The degrees of freedom are discretized by studying the system on a torus. Short-wavelength modes are integrated out to one-loop order. The long-wavelength modes considered to be the relevant degrees of freedom are treated by semiclassical phase-space methods. /copyright/ 1989 Academic Press, Inc.

  9. DC electrophoresis and viscosity of realistic salt-free concentrated suspensions: non-equilibrium dissociation-association processes.

    PubMed

    Ruiz-Reina, Emilio; Carrique, Félix; Lechuga, Luis

    2014-03-01

    Most of the suspensions usually found in industrial applications are concentrated, aqueous and in contact with the atmospheric CO2. The case of suspensions with a high concentration of added salt is relatively well understood and has been considered in many studies. In this work we are concerned with the case of concentrated suspensions that have no ions different than: (1) those stemming from the charged colloidal particles (the added counterions, that counterbalance their surface charge); (2) the H(+) and OH(-) ions from water dissociation, and (3) the ions generated by the atmospheric CO2 contamination. We call this kind of systems "realistic salt-free suspensions". We show some theoretical results about the electrophoretic mobility of a colloidal particle and the electroviscous effect of realistic salt-free concentrated suspensions. The theoretical framework is based on a cell model that accounts for particle-particle interactions in concentrated suspensions, which has been successfully applied to many different phenomena in concentrated suspensions. On the other hand, the water dissociation and CO2 contamination can be described following two different levels of approximation: (a) by local equilibrium mass-action equations, because it is supposed that the reactions are so fast that chemical equilibrium is attained everywhere in the suspension, or (b) by non-equilibrium dissociation-association kinetic equations, because it is considered that some reactions are not rapid enough to ensure local chemical equilibrium. Both approaches give rise to different results in the range from dilute to semidilute suspensions, causing possible discrepancies when comparing standard theories and experiments concerning transport properties of realistic salt-free suspensions.

  10. A non-equilibrium equation-of-motion approach to quantum transport utilizing projection operators.

    PubMed

    Ochoa, Maicol A; Galperin, Michael; Ratner, Mark A

    2014-11-12

    We consider a projection operator approach to the non-equilibrium Green function equation-of-motion (PO-NEGF EOM) method. The technique resolves problems of arbitrariness in truncation of an infinite chain of EOMs and prevents violation of symmetry relations resulting from the truncation (equivalence of left- and right-sided EOMs is shown and symmetry with respect to interchange of Fermi or Bose operators before truncation is preserved). The approach, originally developed by Tserkovnikov (1999 Theor. Math. Phys. 118 85) for equilibrium systems, is reformulated to be applicable to time-dependent non-equilibrium situations. We derive a canonical form of EOMs, thus explicitly demonstrating a proper result for the non-equilibrium atomic limit in junction problems. A simple practical scheme applicable to quantum transport simulations is formulated. We perform numerical simulations within simple models and compare results of the approach to other techniques and (where available) also to exact results.

  11. Infinite-mode squeezed coherent states and non-equilibrium statistical mechanics (phase-space-picture approach)

    NASA Technical Reports Server (NTRS)

    Yeh, Leehwa

    1993-01-01

    The phase-space-picture approach to quantum non-equilibrium statistical mechanics via the characteristic function of infinite-mode squeezed coherent states is introduced. We use quantum Brownian motion as an example to show how this approach provides an interesting geometrical interpretation of quantum non-equilibrium phenomena.

  12. Non-equilibrium slave bosons approach to quantum pumping in interacting quantum dots

    NASA Astrophysics Data System (ADS)

    Citro, Roberta; Romeo, Francesco

    2016-03-01

    We review a time-dependent slave bosons approach within the non-equilibrium Green's function technique to analyze the charge and spin pumping in a strongly interacting quantum dot. We study the pumped current as a function of the pumping phase and of the dot energy level and show that a parasitic current arises, beyond the pure pumping one, as an effect of the dynamical constraints. We finally illustrate an all-electrical mean for spin-pumping and discuss its relevance for spintronics applications.

  13. Unusual dileptions at RHIC a field theoretic approach based on a non-equilibrium chiral phase transition

    SciTech Connect

    Cooper, F.

    1997-09-22

    This paper contains viewgraphs on unusual dileptons at Brookhaven RHIC. A field theory approach is used based on a non-equilibrium chiral phase transformation utilizing the schroedinger and Heisenberg picture.

  14. Effects of non-equilibrium association-dissociation processes in the dynamic electrophoretic mobility and dielectric response of realistic salt-free concentrated suspensions.

    PubMed

    Carrique, Félix; Ruiz-Reina, Emilio; Lechuga, Luis; Arroyo, Francisco J; Delgado, Ángel V

    2013-12-01

    Electrokinetic investigations in nanoparticle suspensions in aqueous media are most often performed assuming that the liquid medium is a strong electrolyte solution with specified concentration. The role of the ions produced by the process of charging the surfaces of the particles is often neglected or, at most, the concentrations of such ions are estimated in some way and added to the concentrations of the ions in the externally prepared solution. The situation here considered is quite different: no electrolyte is dissolved in the medium, and ideally only the counterions stemming from the particle charging are assumed to be in solution. This is the case of so-called salt-free systems. With the aim of making a model for such kind of dispersions as close to real situations as possible, it was previously found to consider the unavoidable presence of H(+) and OH(-) coming from water dissociation, as well as the (almost unavoidable) ions stemming from the dissolution of atmospheric CO2. In this work, we extend such approach by considering that the chemical reactions involved in dissociation and recombination of the (weak) electrolytes in solution must not necessarily be in equilibrium conditions (equal rates of forward and backward reactions). To that aim, we calculate the frequency spectra of the electric permittivity and dynamic electrophoretic mobility of salt-free suspensions considering realistic non-equilibrium conditions, using literature values for the rate constants of the reactions. Four species are linked by such reactions, namely H(+) (from water, from the--assumed acidic--groups on the particle surfaces, and from CO2 dissolution), OH(-) (from water), HCO3(-) and H2CO3 (again from CO2). A cell model is used for the calculations, which are extended to arbitrary values of the surface charge, the particle size, and particle volume fraction, in a wide range of the field frequency ω. Both approaches predict a high frequency relaxation of the counterion

  15. Computational studies of thermal and quantum phase transitions approached through non-equilibrium quenching

    NASA Astrophysics Data System (ADS)

    Liu, Cheng-Wei

    Phase transitions and their associated critical phenomena are of fundamental importance and play a crucial role in the development of statistical physics for both classical and quantum systems. Phase transitions embody diverse aspects of physics and also have numerous applications outside physics, e.g., in chemistry, biology, and combinatorial optimization problems in computer science. Many problems can be reduced to a system consisting of a large number of interacting agents, which under some circumstances (e.g., changes of external parameters) exhibit collective behavior; this type of scenario also underlies phase transitions. The theoretical understanding of equilibrium phase transitions was put on a solid footing with the establishment of the renormalization group. In contrast, non-equilibrium phase transition are relatively less understood and currently a very active research topic. One important milestone here is the Kibble-Zurek (KZ) mechanism, which provides a useful framework for describing a system with a transition point approached through a non-equilibrium quench process. I developed two efficient Monte Carlo techniques for studying phase transitions, one is for classical phase transition and the other is for quantum phase transitions, both are under the framework of KZ scaling. For classical phase transition, I develop a non-equilibrium quench (NEQ) simulation that can completely avoid the critical slowing down problem. For quantum phase transitions, I develop a new algorithm, named quasi-adiabatic quantum Monte Carlo (QAQMC) algorithm for studying quantum quenches. I demonstrate the utility of QAQMC quantum Ising model and obtain high-precision results at the transition point, in particular showing generalized dynamic scaling in the quantum system. To further extend the methods, I study more complex systems such as spin-glasses and random graphs. The techniques allow us to investigate the problems efficiently. From the classical perspective, using the

  16. Effect of oxygen atoms dissociated by non-equilibrium plasma on flame of methane oxygen and argon pre-mixture gas

    NASA Astrophysics Data System (ADS)

    Akashi, Haruaki; Yoshinaga, Tomokazu; Sasaki, Koichi

    2014-10-01

    For more efficient way of combustion, plasma-assisted combustion has been investigated by many researchers. But it is very difficult to clarify the effect of plasma even on the flame of methane. Because there are many complex chemical reactions in combustion system. Sasaki et al. has reported that the flame length of methane and air premixed burner shortened by irradiating microwave power. They also measured emission from Second Positive Band System of nitrogen during the irradiation. The emission indicates existence of high energy electrons which are accelerated by the microwave. The high energy electrons also dissociate oxygen molecules easily and oxygen atom would have some effects on the flame. But the dissociation ratio of oxygen molecules by the non-equilibrium plasma is significantly low, compared to that in the combustion reaction. To clarify the effect of dissociated oxygen atoms on the flame, dependence of dissociation ratio of oxygen on the flame has been examined using CHEMKIN. It is found that in the case of low dissociation ratio of 10-6, the ignition of the flame becomes slightly earlier. It is also found that in the case of high dissociation ratio of 10-3, the ignition time becomes significantly earlier by almost half. This work was supported by KAKENHI (22340170).

  17. "Non-equilibrium" block copolymer micelles with glassy cores: a predictive approach based on theory of equilibrium micelles.

    PubMed

    Nagarajan, Ramanathan

    2015-07-01

    Micelles generated in water from most amphiphilic block copolymers are widely recognized to be non-equilibrium structures. Typically, the micelles are prepared by a kinetic process, first allowing molecular scale dissolution of the block copolymer in a common solvent that likes both the blocks and then gradually replacing the common solvent by water to promote the hydrophobic blocks to aggregate and create the micelles. The non-equilibrium nature of the micelle originates from the fact that dynamic exchange between the block copolymer molecules in the micelle and the singly dispersed block copolymer molecules in water is suppressed, because of the glassy nature of the core forming polymer block and/or its very large hydrophobicity. Although most amphiphilic block copolymers generate such non-equilibrium micelles, no theoretical approach to a priori predict the micelle characteristics currently exists. In this work, we propose a predictive approach for non-equilibrium micelles with glassy cores by applying the equilibrium theory of micelles in two steps. In the first, we calculate the properties of micelles formed in the mixed solvent while true equilibrium prevails, until the micelle core becomes glassy. In the second step, we freeze the micelle aggregation number at this glassy state and calculate the corona dimension from the equilibrium theory of micelles. The condition when the micelle core becomes glassy is independently determined from a statistical thermodynamic treatment of diluent effect on polymer glass transition temperature. The predictions based on this "non-equilibrium" model compare reasonably well with experimental data for polystyrene-polyethylene oxide diblock copolymer, which is the most extensively studied system in the literature. In contrast, the application of the equilibrium model to describe such a system significantly overpredicts the micelle core and corona dimensions and the aggregation number. The non-equilibrium model suggests ways to

  18. Non-equilibrium STLS approach to transport properties of single impurity Anderson model

    NASA Astrophysics Data System (ADS)

    Rezai, Raheleh; Ebrahimi, Farshad

    2014-04-01

    In this work, using the non-equilibrium Keldysh formalism, we study the effects of the electron-electron interaction and the electron-spin correlation on the non-equilibrium Kondo effect and the transport properties of the symmetric single impurity Anderson model (SIAM) at zero temperature by generalizing the self-consistent method of Singwi, Tosi, Land, and Sjolander (STLS) for a single-band tight-binding model with Hubbard type interaction to out of equilibrium steady-states. We at first determine in a self-consistent manner the non-equilibrium spin correlation function, the effective Hubbard interaction, and the double-occupancy at the impurity site. Then, using the non-equilibrium STLS spin polarization function in the non-equilibrium formalism of the iterative perturbation theory (IPT) of Yosida and Yamada, and Horvatic and Zlatic, we compute the spectral density, the current-voltage characteristics and the differential conductance as functions of the applied bias and the strength of on-site Hubbard interaction. We compare our spectral densities at zero bias with the results of numerical renormalization group (NRG) and depict the effects of the electron-electron interaction and electron-spin correlation at the impurity site on the aforementioned properties by comparing our numerical result with the order U2 IPT. Finally, we show that the obtained numerical results on the differential conductance have a quadratic universal scaling behavior and the resulting Kondo temperature shows an exponential behavior.

  19. Non-equilibrium STLS approach to transport properties of single impurity Anderson model

    SciTech Connect

    Rezai, Raheleh Ebrahimi, Farshad

    2014-04-15

    In this work, using the non-equilibrium Keldysh formalism, we study the effects of the electron–electron interaction and the electron-spin correlation on the non-equilibrium Kondo effect and the transport properties of the symmetric single impurity Anderson model (SIAM) at zero temperature by generalizing the self-consistent method of Singwi, Tosi, Land, and Sjolander (STLS) for a single-band tight-binding model with Hubbard type interaction to out of equilibrium steady-states. We at first determine in a self-consistent manner the non-equilibrium spin correlation function, the effective Hubbard interaction, and the double-occupancy at the impurity site. Then, using the non-equilibrium STLS spin polarization function in the non-equilibrium formalism of the iterative perturbation theory (IPT) of Yosida and Yamada, and Horvatic and Zlatic, we compute the spectral density, the current–voltage characteristics and the differential conductance as functions of the applied bias and the strength of on-site Hubbard interaction. We compare our spectral densities at zero bias with the results of numerical renormalization group (NRG) and depict the effects of the electron–electron interaction and electron-spin correlation at the impurity site on the aforementioned properties by comparing our numerical result with the order U{sup 2} IPT. Finally, we show that the obtained numerical results on the differential conductance have a quadratic universal scaling behavior and the resulting Kondo temperature shows an exponential behavior. -- Highlights: •We introduce for the first time the non-equilibrium method of STLS for Hubbard type models. •We determine the transport properties of SIAM using the non-equilibrium STLS method. •We compare our results with order-U2 IPT and NRG. •We show that non-equilibrium STLS, contrary to the GW and self-consistent RPA, produces the two Hubbard peaks in DOS. •We show that the method keeps the universal scaling behavior and correct

  20. Multiple scales approach to the gas-piston non-equilibrium themodynamics

    NASA Astrophysics Data System (ADS)

    Chiuchiù, D.; Gubbiotti, G.

    2016-05-01

    The non-equilibrium thermodynamics of a gas inside a piston is a conceptually simple problem where analytic results are rare. For example, it is hard to find in the literature analytic formulas that describe the heat exchanged with the reservoir when the system either relaxes to equilibrium or is compressed over a finite time. In this paper we derive this kind of analytic formula. To achieve this result, we take the equations derived by Cerino et al (2015 Phys. Rev. E 91 032128) describing the dynamic evolution of a gas-piston system, we cast them in a dimensionless form, and we solve the dimensionless equations with the multiple scales expansion method. With the approximated solutions we obtained, we express in a closed form the heat exchanged by the gas-piston system with the reservoir for a large class of relevant non-equilibrium situations.

  1. Heat transfer in porous medium embedded with vertical plate: Non-equilibrium approach - Part A

    SciTech Connect

    Badruddin, Irfan Anjum; Quadir, G. A.

    2016-06-08

    Heat transfer in a porous medium embedded with vertical flat plate is investigated by using thermal non-equilibrium model. Darcy model is employed to simulate the flow inside porous medium. It is assumed that the heat transfer takes place by natural convection and radiation. The vertical plate is maintained at isothermal temperature. The governing partial differential equations are converted into non-dimensional form and solved numerically using finite element method. Results are presented in terms of isotherms and streamlines for various parameters such as heat transfer coefficient parameter, thermal conductivity ratio, and radiation parameter.

  2. Time-dependent non-equilibrium dielectric response in QM/continuum approaches

    SciTech Connect

    Ding, Feizhi; Lingerfelt, David B.; Li, Xiaosong E-mail: li@chem.washington.edu; Mennucci, Benedetta E-mail: li@chem.washington.edu

    2015-01-21

    The Polarizable Continuum Models (PCMs) are some of the most inexpensive yet successful methods for including the effects of solvation in quantum-mechanical calculations of molecular systems. However, when applied to the electronic excitation process, these methods are restricted to dichotomously assuming either that the solvent has completely equilibrated with the excited solute charge density (infinite-time limit), or that it retains the configuration that was in equilibrium with the solute prior to excitation (zero-time limit). This renders the traditional PCMs inappropriate for resolving time-dependent solvent effects on non-equilibrium solute electron dynamics like those implicated in the instants following photoexcitation of a solvated molecular species. To extend the existing methods to this non-equilibrium regime, we herein derive and apply a new formalism for a general time-dependent continuum embedding method designed to be propagated alongside the solute’s electronic degrees of freedom in the time domain. Given the frequency-dependent dielectric constant of the solvent, an equation of motion for the dielectric polarization is derived within the PCM framework and numerically integrated simultaneously with the time-dependent Hartree fock/density functional theory equations. Results for small molecular systems show the anticipated dipole quenching and electronic state dephasing/relaxation resulting from out-of-phase charge fluctuations in the dielectric and embedded quantum system.

  3. A variational approach to coarse-graining of equilibrium and non-equilibrium atomistic description at finite temperature

    SciTech Connect

    Kulkarni, Y; Knap, J; Ortiz, M

    2007-04-26

    The aim of this paper is the development of equilibrium and non-equilibrium extensions of the quasicontinuum (QC) method. We first use variational mean-field theory and the maximum-entropy formalism for deriving approximate probability distribution and partition functions for the system. The resulting probability distribution depends locally on atomic temperatures defined for every atom and the corresponding thermodynamic potentials are explicit and local in nature. The method requires an interatomic potential as the sole empirical input. Numerical validation is performed by simulating thermal equilibrium properties of selected materials using the Lennard-Jones pair potential and the EAM potential and comparing with molecular dynamics results as well as experimental data. The max-ent variational approach is then taken as a basis for developing a three-dimensional non-equilibrium finite temperature extension of the quasicontinuum method. This extension is accomplished by coupling the local temperature-dependent free energy furnished by the max-ent approximation scheme to the heat equation in a joint thermo-mechanical variational setting. Results for finite-temperature nanoindentation tests demonstrate the ability of the method to capture non-equilibrium transport properties and differentiate between slow and fast indentation.

  4. A steady-state non-equilibrium molecular dynamics approach for the study of evaporation processes

    NASA Astrophysics Data System (ADS)

    Zhang, Jianguo; Müller-Plathe, Florian; Yahia-Ouahmed, Méziane; Leroy, Frédéric

    2013-10-01

    Two non-equilibrium methods (called bubble method and splitting method, respectively) have been developed and tested to study the steady state evaporation of a droplet surrounded by its vapor, where the evaporation continuously occurs at the vapor-liquid interface while the droplet size remains constant. In the bubble method, gas molecules are continuously reinserted into a free volume (represented by a bubble) located at the centre of mass of the droplet to keep the droplet size constant. In the splitting method, a molecule close to the centre of mass of the droplet is split into two: In this way, the droplet size is also maintained during the evaporation. By additional local thermostats confined to the area of insertion, the effect of frequent insertions on properties such as density and temperature can be limited to the immediate insertion area. Perturbations are not observed in other parts of the droplet. In the end, both the bubble method and the splitting method achieve steady-state droplet evaporation. Although these methods have been developed using an isolated droplet, we anticipate that they will find a wide range of applications in the study of the evaporation of isolated films and droplets or thin films on heated substrates or under confinement. They can in principle also be used to study the steady-state of other physical processes, such as the diffusion or permeation of gas molecules or ions in a pressure gradient or a concentration gradient.

  5. Thermodynamics of Tropical Cyclones: A Thermodynamic Approach to Nonlinear Non-equilibrium Phenomena

    NASA Astrophysics Data System (ADS)

    Ozawa, H.; Shimokawa, S.

    2016-12-01

    A formation process of circulatory motion of tropical cyclones is investigated from a thermodynamic viewpoint. The generation rate of mechanical energy by a fluid motion under diabatic heating and cooling, and the dissipation rate of this energy due to irreversible processes are formulated from the 1st and 2nd laws of thermodynamics. This formulation is applied to a tropical cyclone, and the formation process of the circulatory motion is examined from a balance between the generation and dissipation rates of mechanical energy in the fluid system. We find from this formulation and data analysis that the thermodynamic efficiency of tropical cyclones is about 40% lower than the Carnot maximum efficiency because of the presence of thermal dissipation due to irreversible transport of sensible and latent heat in the system. We show that a tropical cyclone tends to develop within a few days through a feedback supply of mechanical energy when the sea surface temperature is higher than 300 K, and when the horizontal scale of circulation becomes larger than the vertical height of the troposphere, being consistent with statistical properties of typhoons observed in the western North Pacific. Applications of this method to other nonlinear non-equilibrium phenomena are also discussed. Ref.) H. Ozawa and S. Shimokawa, Tellus A 67, 24216 (2015).

  6. Evaporation from Soils Under Thermal Boundary Conditions: Experimental and Modeling Investigation to Compare Equilibrium and Non-Equilibrium Based Approaches

    NASA Astrophysics Data System (ADS)

    Smits, K. M.; Cihan, A.; Sakaki, T.; Illangasekare, T. H.

    2010-12-01

    In the shallow subsurface immediately below the land-atmosphere interface, it is widely recognized that the movement of water vapor is closely coupled to thermal processes. However, their mutual interactions are rarely considered in most soil water modeling efforts or in practical applications where it becomes necessary to understand and predict the spatial and temporal distribution of soil moisture. The validation of numerical models that are designed to capture these processes is difficult due to the inherent complexities of the problem in field systems and the scarcity of field or laboratory data with accurately known hydraulic and thermal parameters of soils, thus limiting the testing and refinement of heat and water transfer theories. In addition, it is often assumed in traditional soil physics applications that water vapor concentration in the air adjacent to the water phase in soil pores is always in equilibrium with liquid water, i.e., vaporization occurs instantaneously, which can result in over prediction of evaporation from soil. The goal of this work is to perform controlled experiments under transient conditions of soil moisture and temperature using soil with accurately known hydraulic/thermal properties and use this data to test existing theories and develop appropriate numerical models. In this work, water vapor flow under varying temperature gradients was implemented based on a concept that allows non-equilibrium liquid/gas phase change with gas phase vapor diffusion. In order to validate this new approach, we developed a long column apparatus equipped with a network of sensors and generated data under well-controlled thermal boundary conditions at the soil surface. Water saturation, capillary pressure, temperature, relative humidity and column weight to record total mass of water in the column were continuously monitored. Results from numerical simulations based on the conventional equilibrium and non-equilibrium approaches were compared with

  7. 2-D Modeling of Nanoscale MOSFETs: Non-Equilibrium Green's Function Approach

    NASA Technical Reports Server (NTRS)

    Svizhenko, Alexei; Anantram, M. P.; Govindan, T. R.; Biegel, Bryan

    2001-01-01

    We have developed physical approximations and computer code capable of realistically simulating 2-D nanoscale transistors, using the non-equilibrium Green's function (NEGF) method. This is the most accurate full quantum model yet applied to 2-D device simulation. Open boundary conditions and oxide tunneling are treated on an equal footing. Electrons in the ellipsoids of the conduction band are treated within the anisotropic effective mass approximation. Electron-electron interaction is treated within Hartree approximation by solving NEGF and Poisson equations self-consistently. For the calculations presented here, parallelization is performed by distributing the solution of NEGF equations to various processors, energy wise. We present simulation of the "benchmark" MIT 25nm and 90nm MOSFETs and compare our results to those from the drift-diffusion simulator and the quantum-corrected results available. In the 25nm MOSFET, the channel length is less than ten times the electron wavelength, and the electron scattering time is comparable to its transit time. Our main results are: (1) Simulated drain subthreshold current characteristics are shown, where the potential profiles are calculated self-consistently by the corresponding simulation methods. The current predicted by our quantum simulation has smaller subthreshold slope of the Vg dependence which results in higher threshold voltage. (2) When gate oxide thickness is less than 2 nm, gate oxide leakage is a primary factor which determines off-current of a MOSFET (3) Using our 2-D NEGF simulator, we found several ways to drastically decrease oxide leakage current without compromising drive current. (4) Quantum mechanically calculated electron density is much smaller than the background doping density in the poly silicon gate region near oxide interface. This creates an additional effective gate voltage. Different ways to. include this effect approximately will be discussed.

  8. 2-D Modeling of Nanoscale MOSFETs: Non-Equilibrium Green's Function Approach

    NASA Technical Reports Server (NTRS)

    Svizhenko, Alexei; Anantram, M. P.; Govindan, T. R.; Biegel, Bryan

    2001-01-01

    We have developed physical approximations and computer code capable of realistically simulating 2-D nanoscale transistors, using the non-equilibrium Green's function (NEGF) method. This is the most accurate full quantum model yet applied to 2-D device simulation. Open boundary conditions and oxide tunneling are treated on an equal footing. Electrons in the ellipsoids of the conduction band are treated within the anisotropic effective mass approximation. Electron-electron interaction is treated within Hartree approximation by solving NEGF and Poisson equations self-consistently. For the calculations presented here, parallelization is performed by distributing the solution of NEGF equations to various processors, energy wise. We present simulation of the "benchmark" MIT 25nm and 90nm MOSFETs and compare our results to those from the drift-diffusion simulator and the quantum-corrected results available. In the 25nm MOSFET, the channel length is less than ten times the electron wavelength, and the electron scattering time is comparable to its transit time. Our main results are: (1) Simulated drain subthreshold current characteristics are shown, where the potential profiles are calculated self-consistently by the corresponding simulation methods. The current predicted by our quantum simulation has smaller subthreshold slope of the Vg dependence which results in higher threshold voltage. (2) When gate oxide thickness is less than 2 nm, gate oxide leakage is a primary factor which determines off-current of a MOSFET (3) Using our 2-D NEGF simulator, we found several ways to drastically decrease oxide leakage current without compromising drive current. (4) Quantum mechanically calculated electron density is much smaller than the background doping density in the poly silicon gate region near oxide interface. This creates an additional effective gate voltage. Different ways to. include this effect approximately will be discussed.

  9. Open problems in non-equilibrium physics

    SciTech Connect

    Kusnezov, D.

    1997-09-22

    The report contains viewgraphs on the following: approaches to non-equilibrium statistical mechanics; classical and quantum processes in chaotic environments; classical fields in non-equilibrium situations: real time dynamics at finite temperature; and phase transitions in non-equilibrium conditions.

  10. Non-canonical distribution and non-equilibrium transport beyond weak system-bath coupling regime: A polaron transformation approach

    NASA Astrophysics Data System (ADS)

    Xu, Dazhi; Cao, Jianshu

    2016-08-01

    The concept of polaron, emerged from condense matter physics, describes the dynamical interaction of moving particle with its surrounding bosonic modes. This concept has been developed into a useful method to treat open quantum systems with a complete range of system-bath coupling strength. Especially, the polaron transformation approach shows its validity in the intermediate coupling regime, in which the Redfield equation or Fermi's golden rule will fail. In the polaron frame, the equilibrium distribution carried out by perturbative expansion presents a deviation from the canonical distribution, which is beyond the usual weak coupling assumption in thermodynamics. A polaron transformed Redfield equation (PTRE) not only reproduces the dissipative quantum dynamics but also provides an accurate and efficient way to calculate the non-equilibrium steady states. Applications of the PTRE approach to problems such as exciton diffusion, heat transport and light-harvesting energy transfer are presented.

  11. Evaporation from soils under diurnal boundary conditions: Experimental and modeling investigation to evaluate Non-equilibrium-based approaches

    NASA Astrophysics Data System (ADS)

    Trautz, Andrew; Smits, Kathleen; Cihan, Abdullah; Illangasekare, Tissa

    2013-04-01

    Evaporation from bare soil is a key component of the hydrologic cycle and the process primarily responsible for governing water and energy exchanges between the land and atmosphere. Despite its importance, there is still a great deal of uncertainty associated with our current understanding of this complex multiphase phenomenon. A common approach when modeling the movement of liquid water, water vapor and heat in the soil immediately below the land-atmosphere interface is to assume that water vapor concentration in air is always in equilibrium with liquid water. However, this equilibrium assumption is called into question by experiments about liquid/gas phase change in porous media suggesting that the equilibrium establishment is not instantaneous; a volatilization or condensation time is observed at the macroscopic scale under certain conditions. Introduction of such a non-equilibrium mass transfer relationship is based on the Hertz-Knudsen equation (HKE) derived from the kinetic theory of gases. Multiple formulations have been presented to represent the rate of phase change between water and vapor, many relying on empirical fitting parameters due to limited experimental data. The purpose of this work is to perform an unbiased comparison between various conceptual and mathematical formulations for non-equilibrium phase change on evaporation and develop appropriate numerical models to be used in simulations. The key to such a comparison is the availability of accurate data. As such data at the scale of interest is not possible to obtain in field settings, a unique two-dimensional cell apparatus was developed. The test cell was equipped with a network of sensors for automated and continuous monitoring of soil moisture, soil and air temperature and relative humidity, and wind velocity to generate precision data. A fully-coupled numerical model to solve the governing equations for heat, liquid water and water vapor transport in soil was developed. The code implements a

  12. Non-equilibrium thermodynamical description of rhythmic motion patterns of active systems: a canonical-dissipative approach.

    PubMed

    Dotov, D G; Kim, S; Frank, T D

    2015-02-01

    We derive explicit expressions for the non-equilibrium thermodynamical variables of a canonical-dissipative limit cycle oscillator describing rhythmic motion patterns of active systems. These variables are statistical entropy, non-equilibrium internal energy, and non-equilibrium free energy. In particular, the expression for the non-equilibrium free energy is derived as a function of a suitable control parameter. The control parameter determines the Hopf bifurcation point of the deterministic active system and describes the effective pumping of the oscillator. In analogy to the equilibrium free energy of the Landau theory, it is shown that the non-equilibrium free energy decays as a function of the control parameter. In doing so, a similarity between certain equilibrium and non-equilibrium phase transitions is pointed out. Data from an experiment on human rhythmic movements is presented. Estimates for pumping intensity as well as the thermodynamical variables are reported. It is shown that in the experiment the non-equilibrium free energy decayed when pumping intensity was increased, which is consistent with the theory. Moreover, pumping intensities close to zero could be observed at relatively slow intended rhythmic movements. In view of the Hopf bifurcation underlying the limit cycle oscillator model, this observation suggests that the intended limit cycle movements were actually more similar to trajectories of a randomly perturbed stable focus.

  13. Non-equilibrium dynamics of O( N) nonlinear sigma models: a large- N approach

    NASA Astrophysics Data System (ADS)

    Das, Sumit R.; Sengupta, Krishnendu

    2012-09-01

    We study the time evolution of the mass gap of the O( N) non-linear sigma model in 2 + 1 dimensions due to a time-dependent coupling in the large- N limit. Using the Schwinger-Keldysh approach, we derive a set of equations at large N which determine the time-dependent gap in terms of the coupling. These equations lead to a criterion for the breakdown of adiabaticity for slow variation of the coupling leading to a Kibble-Zurek scaling law. We describe a self-consistent numerical procedure to solve these large- N equations and provide explicit numerical solutions for a coupling which asymptotes to constant values in the gapped phase and approaches the zero temperature equilibrium critical point in a linear fashion. We demonstrate that for such a protocol there is a value of the coupling g = g_c^{{dyn}} > {g_c} where the gap function vanishes, possibly indicating a dynamical instability. We study the dependence of g_c^{{dyn}} on both the rate of change of the coupling and the initial temperature. We also verify, by studying the evolution of the mass gap subsequent to a sudden change in g, that the model does not display thermalization within a finite time interval t 0 and discuss the implications of this observation for its conjectured gravitational dual as a higher spin theory in AdS 4.

  14. A predictive analytic model for high-performance tunneling field-effect transistors approaching non-equilibrium Green's function simulations

    SciTech Connect

    Salazar, Ramon B. E-mail: hilatikh@purdue.edu; Appenzeller, Joerg; Ilatikhameneh, Hesameddin E-mail: hilatikh@purdue.edu; Rahman, Rajib; Klimeck, Gerhard

    2015-10-28

    A new compact modeling approach is presented which describes the full current-voltage (I-V) characteristic of high-performance (aggressively scaled-down) tunneling field-effect-transistors (TFETs) based on homojunction direct-bandgap semiconductors. The model is based on an analytic description of two key features, which capture the main physical phenomena related to TFETs: (1) the potential profile from source to channel and (2) the elliptic curvature of the complex bands in the bandgap region. It is proposed to use 1D Poisson's equations in the source and the channel to describe the potential profile in homojunction TFETs. This allows to quantify the impact of source/drain doping on device performance, an aspect usually ignored in TFET modeling but highly relevant in ultra-scaled devices. The compact model is validated by comparison with state-of-the-art quantum transport simulations using a 3D full band atomistic approach based on non-equilibrium Green's functions. It is shown that the model reproduces with good accuracy the data obtained from the simulations in all regions of operation: the on/off states and the n/p branches of conduction. This approach allows calculation of energy-dependent band-to-band tunneling currents in TFETs, a feature that allows gaining deep insights into the underlying device physics. The simplicity and accuracy of the approach provide a powerful tool to explore in a quantitatively manner how a wide variety of parameters (material-, size-, and/or geometry-dependent) impact the TFET performance under any bias conditions. The proposed model presents thus a practical complement to computationally expensive simulations such as the 3D NEGF approach.

  15. The mechanism of inward rectification in Kir channels: A novel kinetic model with non-equilibrium thermodynamics approach.

    PubMed

    Hsieh, Chi-Pan; Chiang, Cheng-Chin; Huang, Chiung-Wei

    2016-05-01

    The mechanisms of the strong inward rectification in inward rectifier K(+) (Kir) channels are controversial because the drop in electrical potential due to the movement of the blocker and coupling ions is insufficient to explain the steep voltage-dependent block near the equilibrium potential. Here, we study the "driving force"-dependent block in Kir channels with a novel approach incorporating concepts from the non-equilibrium thermodynamics of small systems, and computer kinetic simulations based on the experimental data of internal Ba(2+) block on Kir2.1 channels. The steep exponential increase in the apparent binding rate near the equilibrium potential is explained, when the encounter frequency is construed as the likelihood of transfer events down or against the electrochemical potential gradient. The exponent of flux ratio, nf=2.62, implies that the blockage of the internal blocker may be coupled with the outward transport of 2 to 3K(+) ions. The flux-coupled block in the single-file multi-ion pore can be demonstrated by the concentration gradient alone, as well as when the driving force is the electrochemical potential difference across the membrane. Copyright © 2016 Elsevier B.V. All rights reserved.

  16. Non-equilibrium proteins.

    PubMed

    Klonowski, W

    2001-07-01

    There exist no methodical studies concerning non-equilibrium systems in cellular biology. This paper is an attempt to partially fill this shortcoming. We have undertaken an extensive data-mining operation in the existing scientific literature to find scattered information about non-equilibrium subcellular systems, in particular concerning fast proteins, i.e. those with short turnover half-time. We have advanced the hypothesis that functionality in fast proteins emerges as a consequence of their intrinsic physical instability that arises due to conformational strains resulting from co-translational folding (the interdependence between chain elongation and chain folding during biosynthesis on ribosomes). Such intrinsic physical instability, a kind of conformon (Klonowski-Klonowska conformon, according to Ji, (Molecular Theories of Cell Life and Death, Rutgers University Press, New Brunswick, 1991)) is probably the most important feature determining functionality and timing in these proteins. If our hypothesis is true, the turnover half-time of fast proteins should be positively correlated with their molecular weight, and some experimental results (Ames et al., J. Neurochem. 35 (1980) 131) indeed demonstrated such a correlation. Once the native structure (and function) of a fast protein macromolecule is lost, it may not be recovered--denaturation of such proteins will always be irreversible; therefore, we searched for information on irreversible denaturation. Only simulation and modeling of protein co-translational folding may answer the questions concerning fast proteins (Ruggiero and Sacile, Med. Biol. Eng. Comp. 37 (Suppl. 1) (1999) 363). Non-equilibrium structures may also be built up of protein subunits, even if each one taken by itself is in thermodynamic equilibrium (oligomeric proteins; sub-cellular sol-gel dissipative network structures).

  17. Combining the GW formalism with the polarizable continuum model: A state-specific non-equilibrium approach.

    PubMed

    Duchemin, Ivan; Jacquemin, Denis; Blase, Xavier

    2016-04-28

    We have implemented the polarizable continuum model within the framework of the many-body Green's function GW formalism for the calculation of electron addition and removal energies in solution. The present formalism includes both ground-state and non-equilibrium polarization effects. In addition, the polarization energies are state-specific, allowing to obtain the bath-induced renormalisation energy of all occupied and virtual energy levels. Our implementation is validated by comparisons with ΔSCF calculations performed at both the density functional theory and coupled-cluster single and double levels for solvated nucleobases. The present study opens the way to GW and Bethe-Salpeter calculations in disordered condensed phases of interest in organic optoelectronics, wet chemistry, and biology.

  18. A New Position-Space Renormalization-Group Approach for Non-Equilibrium Systems and its Application to the Three-State Driven Lattice Gas

    NASA Astrophysics Data System (ADS)

    Georgiev, Ivan T.; McKay, Susan R.

    2004-03-01

    We have introduced a general position-space renormalization-group approach for non-equilibrium systems developed from the microscopic master equation. The method is based upon a closed form representation of the parameters of the system in terms of the steady state probability distribution of small clusters. From the master equation in terms of these small clusters, we build recursion relations linking parameters affecting transition rates on various length scales and determine the flow topology. Results for the three-state driven lattice gas show many of the expected features associated with the phase diagrams previously reported for this system, (G. Korniss, B. Schmittmann, and R.K.P. Zia, Non-Equilibrium Phase Transitions in a Simple Three-State Lattice Gas, J. Stat. Phys. 86, 721 (1997).)in excellent agreement with simulations. The flow diagrams also exhibit added complexities, suggesting multiple regions within the ordered phase for some values of parameters and the presence of an extra "source" fixed point. (I.T. Georgiev, U. of Maine Ph.D. Thesis (2003); I.T. Georgiev and S.R. McKay, in preparation.)

  19. Evaporation and condensation in soils: Experimental and modeling investigation to compare non-equilibrium-based approaches under different atmospheric boundary conditions

    NASA Astrophysics Data System (ADS)

    Trautz, A.; Smits, K. M.; Cihan, A.; Illangasekare, T. H.

    2013-12-01

    Evaporation and condensation in bare soils govern water and energy fluxes between the land and atmosphere. Despite their importance to the hydrologic cycle, there is great uncertainty associated with our understanding of these complex multiphase phenomena. At the representative elementary volume scale, phase change (i.e. evaporation/condensation) between water vapor and liquid water is commonly evaluated in soil hydrology using the equilibrium assumption. The equilibrium-based approach assumes that within the soil pores, phase change occurs instantaneously. However, finite volatilization/condensation times have been observed experimentally under certain conditions calling into question the validity of using the equilibrium assumption for all possible land-atmospheric interaction scenarios. The use of non-equilibrium mass transfer relationships is based on the Hertz-Knudsen (HK) equation derived from the kinetic theory of gases. Multiple formulations have been posited to numerically represent phase change between water vapor and liquid water, many relying on empirical fitting parameters. The purpose of this investigation was to perform an unbiased comparison between the various non-equilibrium phase change formulations using a fully coupled heat and mass transfer model that simulates the processes of evaporation/condensation from soils using precision generated laboratory data. A non-isothermal solution was implemented in a numerical model to account for five different non-equilibrium phase change formulations reported in literature. A series of five experiments were performed using a unique laboratory system consisting of a soil tank with controlled airflow boundary conditions at the soil surface. The apparatus was equipped with a sensor network for continuous and autonomous collection of soil moisture, soil and air temperature, relative humidity, and wind velocity data. Soil surface conditions (e.g. temperature, diurnal variations and wind speed) and initial

  20. Non-Equilibrium Molecular Dynamics

    NASA Astrophysics Data System (ADS)

    Ciccotti, Giovanni; Kapral, Raymond; Sergi, Alessandro

    Statistical mechanics provides a well-established link between microscopic equilibrium states and thermodynamics. If one considers systems out of equilibrium, the link between microscopic dynamical properties and non-equilibrium macroscopic states is more difficult to establish [1,2]. For systems lying near equilibrium, linear response theory provides a route to derive linear macroscopic laws and the microscopic expressions for the transport properties that enter the constitutive relations. If the system is displaced far from equilibrium, no fully general theory exists to treat such systems. By restricting consideration to a class of non-equilibrium states which arise from perturbations (linear or non-linear) of an equilibrium state, methods can be developed to treat non-equilibrium states. Furthermore, non-equilibrium molecular dynamics (NEMD) simulation methods can be devised to provide estimates for the transport properties of these systems.

  1. [Non-equilibrium thermodynamic separation theory of nonlinear chromatograph I. Local Lagrangian approach for nonlinear equilibrium-dispersive processes].

    PubMed

    Liang, Heng

    2007-09-01

    The matrix forms of local Lagrangian approach (LLA) are developed based on Lagrangian description for single-component in nonlinear, non-ideal chromatography. A local thermodynamic path (LTP) is designed based on essential physical principles, such as the Lagrangian description, the local equilibrium assumption and the thermodynamic state functions. With the LTP, the iteration equations of fully thermodynamic states on time sequence in the matrix forms are obtained with the Markov character. And the convergence, compatibility and stability of the LLA based on the LTP are discussed with some theoretical analysis and numerical experiments, and the stability condition of the LLA is given. The algorithm of the LLA in the vector form is shown as the computer program to simulate the elution profiles affected by a few of factors, space-distribution, axial diffusions, injection samples, etc. According to the LLA, the corresponding relationships are established between the trajectories of discrete time state and discrete time control vectors in the ergodic space. And a compendium algorithm of multistage decision problems concerning the optimal control of nonlinear, non-idea chromatography is given with Bellman's dynamic programming to find the optimal trajectories of state vector and control vector. The matrix forms of the LLA remove the gap between preparative chromatography theories and Markov decision processes or optimal control approaches based on discrete time states.

  2. Gender differences in dissociation. A dimensional approach.

    PubMed

    Spitzer, Carsten; Klauer, Thomas; Grabe, Hans-Joergen; Lucht, Michael; Stieglitz, Rolf-Dieter; Schneider, Wolfgang; Freyberger, Harald J

    2003-01-01

    Considering that epidemiological research on dissociative disorders has suggested a 9 to 1 predominance of female cases, this study investigated the relationship between gender and dissociation using a dimensional approach. A total of 2,153 participants from different diagnostic groups completed the Dissociative Experience Scale. In order to control for the confounding effect of current psychopathology a subgroup 790 subjects additionally completed the SCL-90. We did not find any differences in the general or pathological dissociation scores. Hypothetical gender differences in dissociative psychopathology were not a function of diagnostic categories. There were no significant sex differences in the distribution of high dissociators. Our findings suggest that men and women do not generally differ in dissociative psychopathology. The implications for future investigations on the epidemiology, etiology, and psychobiology of dissociative symptoms are discussed. Copyright 2003 S. Karger AG, Basel

  3. Communication: Energy-dependent resonance broadening in symmetric and asymmetric molecular junctions from an ab initio non-equilibrium Green's function approach

    SciTech Connect

    Liu, Zhen-Fei; Neaton, Jeffrey B.

    2014-10-07

    The electronic structure of organic-inorganic interfaces often features resonances originating from discrete molecular orbitals coupled to continuum lead states. An example is molecular junction, individual molecules bridging electrodes, where the shape and peak energy of such resonances dictate junction conductance, thermopower, I-V characteristics, and related transport properties. In molecular junctions where off-resonance coherent tunneling dominates transport, resonance peaks in the transmission function are often assumed to be Lorentzian functions with an energy-independent broadening parameter Γ. Here we define a new energy-dependent resonance broadening function, Γ(E), based on diagonalization of non-Hermitian matrices, which can describe resonances of a more complex, non-Lorentzian nature and can be decomposed into components associated with the left and right leads, respectively. We compute this quantity via an ab initio non-equilibrium Green's function (NEGF) approach based on density functional theory (DFT) for both symmetric and asymmetric molecular junctions, and show that our definition of Γ(E), when combined with Breit-Wigner formula, reproduces the transmission calculated from DFT-NEGF. Through a series of examples, we illustrate how this approach can shed new light on experiments and understanding of junction transport properties in terms of molecular orbitals.

  4. Communication: Energy-dependent resonance broadening in symmetric and asymmetric molecular junctions from an ab initio non-equilibrium Green's function approach

    NASA Astrophysics Data System (ADS)

    Liu, Zhen-Fei; Neaton, Jeffrey B.

    2014-10-01

    The electronic structure of organic-inorganic interfaces often features resonances originating from discrete molecular orbitals coupled to continuum lead states. An example is molecular junction, individual molecules bridging electrodes, where the shape and peak energy of such resonances dictate junction conductance, thermopower, I-V characteristics, and related transport properties. In molecular junctions where off-resonance coherent tunneling dominates transport, resonance peaks in the transmission function are often assumed to be Lorentzian functions with an energy-independent broadening parameter Γ. Here we define a new energy-dependent resonance broadening function, Γ(E), based on diagonalization of non-Hermitian matrices, which can describe resonances of a more complex, non-Lorentzian nature and can be decomposed into components associated with the left and right leads, respectively. We compute this quantity via an ab initio non-equilibrium Green's function (NEGF) approach based on density functional theory (DFT) for both symmetric and asymmetric molecular junctions, and show that our definition of Γ(E), when combined with Breit-Wigner formula, reproduces the transmission calculated from DFT-NEGF. Through a series of examples, we illustrate how this approach can shed new light on experiments and understanding of junction transport properties in terms of molecular orbitals.

  5. Non-equilibrium supramolecular polymerization.

    PubMed

    Sorrenti, Alessandro; Leira-Iglesias, Jorge; Markvoort, Albert J; de Greef, Tom F A; Hermans, Thomas M

    2017-03-28

    Supramolecular polymerization has been traditionally focused on the thermodynamic equilibrium state, where one-dimensional assemblies reside at the global minimum of the Gibbs free energy. The pathway and rate to reach the equilibrium state are irrelevant, and the resulting assemblies remain unchanged over time. In the past decade, the focus has shifted to kinetically trapped (non-dissipative non-equilibrium) structures that heavily depend on the method of preparation (i.e., pathway complexity), and where the assembly rates are of key importance. Kinetic models have greatly improved our understanding of competing pathways, and shown how to steer supramolecular polymerization in the desired direction (i.e., pathway selection). The most recent innovation in the field relies on energy or mass input that is dissipated to keep the system away from the thermodynamic equilibrium (or from other non-dissipative states). This tutorial review aims to provide the reader with a set of tools to identify different types of self-assembled states that have been explored so far. In particular, we aim to clarify the often unclear use of the term "non-equilibrium self-assembly" by subdividing systems into dissipative, and non-dissipative non-equilibrium states. Examples are given for each of the states, with a focus on non-dissipative non-equilibrium states found in one-dimensional supramolecular polymerization.

  6. Non-equilibrium spatial dynamics of ecosystems.

    PubMed

    Guichard, Frederic; Gouhier, Tarik C

    2014-09-01

    Ecological systems show tremendous variability across temporal and spatial scales. It is this variability that ecologists try to predict and that managers attempt to harness in order to mitigate risk. However, the foundations of ecological science and its mainstream agenda focus on equilibrium dynamics to describe the balance of nature. Despite a rich body of literature on non-equilibrium ecological dynamics, we lack a well-developed set of predictions that can relate the spatiotemporal heterogeneity of natural systems to their underlying ecological processes. We argue that ecology needs to expand its current toolbox for the study of non-equilibrium ecosystems in order to both understand and manage their spatiotemporal variability. We review current approaches and outstanding questions related to the study of spatial dynamics and its application to natural ecosystems, including the design of reserves networks. We close by emphasizing the importance of ecosystem function as a key component of a non-equilibrium ecological theory, and of spatial synchrony as a central phenomenon for its inference in natural systems.

  7. Investigation of oxidative phosphorylation in continuous cultures. A non-equilibrium thermodynamic approach to energy transduction for Escherichia coli in aerobic condition

    NASA Astrophysics Data System (ADS)

    Ghafuri, Mohazabeh; Nosrati, Mohsen; Hosseinkhani, Saman

    2015-03-01

    Adenosine triphosphate (ATP) production in living cells is very important. Different researches have shown that in terms of mathematical modeling, the domain of these investigations is essentially restricted. Recently the thermodynamic models have been suggested for calculation of the efficiency of oxidative phosphorylation process and rate of energy loss in animal cells using chemiosmotic theory and non-equilibrium thermodynamics equations. In our previous work, we developed a mathematical model for mitochondria of animal cells. In this research, according to similarities between oxidative phosphorylation process in microorganisms and animal cells, Golfar's model was developed to predict the non-equilibrium thermodynamic behavior of the oxidative phosphorylation process for bacteria in aerobic condition. With this model the rate of energy loss, P/O ratio, and efficiency of oxidative phosphorylation were calculated for Escherichia coli in aerobic condition. The results then were compared with experimental data given by other authors. The thermodynamic model had an acceptable agreement with the experimental data.

  8. Hydraulic non-equilibrium during infiltration induced by structural connectivity

    NASA Astrophysics Data System (ADS)

    Schlüter, S.; Vanderborght, J.; Vogel, H.-J.

    2012-04-01

    Water infiltration into heterogeneous, structured soil leads to hydraulic non-equilibrium across the infiltration front. That is the water content and water potential is not in equilibrium according to some static water retention curve. The water content increases more rapidly in more conductive regions followed by a slow relaxation towards an equilibrium state. An extreme case is preferential infiltration into macro-pores. As flow paths adapt to the structural heterogeneity of the subsurface, there is a direct link between structure and non-equilibrium. The aim of our study is to develop an upscaled description of water dynamics which conserves the macroscopic effects of non-equilibrium and which can be linked to structural properties of the material. However, this relationship cannot be rigorously examined without an upscaling approach that conserves non-equilibrium during averaging of state variables. We achieve this with a novel approach, that is based on flux-weighted averaging of hydraulic potential, and compare its performance to existing averaging approaches by means of infiltration simulations. Further, we set up some meaningful indicators of hydraulic non-equilibrium that can be easily compared to morphological characteristics of the infiltration front. These methods provide a sound basis to assess the impact of structural connectivity on hydraulic non-equilibrium. We generate several realizations of two-dimensional random fields originating from three heterogeneity models with distinct differences in connectivity of high-K areas and conduct infiltration simulations with them. Our results indicate, that an increased isotropic, short-range connectivity reduces non-equilibrium, whereas anisotropic, macropore-like structures enforce it. We observed a good agreement between front morphology and upscaled non-equilibrium. Our findings encourage to use flux-weighted potentials for upscaling of state variables during transient conditions. We demonstrate, that

  9. Hydraulic non-equilibrium during infiltration induced by structural connectivity

    NASA Astrophysics Data System (ADS)

    Schlüter, S.; Vogel, H.

    2011-12-01

    Water infiltration into heterogeneous, structured soil leads to hydraulic non-equilibrium across the infiltration front. That is the water content and water potential is not in equilibrium according to some static water retention curve. The water content increases more rapidly in more conductive regions followed by a slow relaxation towards an equilibrium state. An extreme case is preferential infiltration into macro-pores. As flowpaths adapt to the structural heterogeneity of the subsurface, there is a direct link between structure and non-equilibrium. The aim of our study is to develop an upscaled description of water dynamics which conserves the macroscopic effects of non-equilibrium and which can be linked to structural properties of the material. However, this relationship cannot be rigorously examined without an upscaling approach that conserves non-equilibrium during averaging of state variables. We achieve this with a novel approach, that is based on flux-weighted averaging of hydraulic potential, and compare its performance to existing averaging approaches by means of infiltration simulations. Further, we set up some meaningful indicators of hydraulic non-equilibrium that can be easily compared to morphological characteristics of the infiltration front. These methods provide a sound basis to assess the impact of structural connectivity on hydraulic non-equilibrium. We generate several realizations of two-dimensional random fields originating from three heterogeneity models with distinct differences in connectivity of high-K areas and conduct infiltration simulations with them. Our results indicate, that an increased isotropic, short-range connectivity reduces non-equilibrium, whereas anisotropic, macropore-like structures enforce it. We observed a good agreement between front morphology and upscaled non-equilibrium. Our findings encourage to use flux-weighted potentials for upscaling of state variables during transient conditions. We demonstrate, that this

  10. Hydraulic non-equilibrium during infiltration induced by structural connectivity

    NASA Astrophysics Data System (ADS)

    Schlüter, Steffen; Vanderborght, Jan; Vogel, Hans-Jörg

    2012-08-01

    Water infiltration into heterogeneous, structured soil leads to hydraulic non-equilibrium across the infiltration front. That is, the water content and pressure head are not in equilibrium according to some static water retention curve. The water content increases more rapidly in more conductive regions followed by a slow relaxation towards an equilibrium state behind the front. An extreme case is preferential infiltration into macropores. Since flow paths adapt to the structural heterogeneity of the porous medium, there is a direct link between structure and non-equilibrium. The aim of our study is to develop an upscaled description of water dynamics which conserves the macroscopic effects of non-equilibrium and which can be directly linked to structural properties of the material. A critical question is how to define averaged state variables at the larger scale. We propose a novel approach based on flux-weighted averaging of pressure head, and compare its performance to alternative methods for averaging. Further, we suggest some meaningful indicators of hydraulic non-equilibrium that can be related to morphological characteristics of infiltration fronts in quantitative terms. These methods provide a sound basis to assess the impact of structural connectivity on hydraulic non-equilibrium. We demonstrate our approach using numerical case studies for infiltration into two-dimensional heterogeneous media using three different structure models with distinct differences in connectivity. Our results indicate that an increased isotropic, short-range connectivity reduces non-equilibrium, whereas anisotropic structures that are elongated in the direction of flow enforce it. We observe a good agreement between front morphology and effective hydraulic non-equilibrium. A detailed comparison of averaged state variables with results from an upscaled model that includes hydraulic non-equilibrium outlines potential improvements in the description of non-equilibrium dynamics

  11. Non-equilibrium Majorana fluctuations

    NASA Astrophysics Data System (ADS)

    Smirnov, Sergey

    2017-06-01

    Non-equilibrium physics of random events, or fluctuations, is a unique fingerprint of a given system. Here we demonstrate that in non-interacting systems with dynamics driven essentially by Majorana states the effective charge {e}* , characterizing the electric current fluctuations, is fractional. This is in contrast to non-interacting Dirac systems with the trivial electronic charge {e}* =e. In the Majorana state, however, we predict two different fractional effective charges at low and high energies, {e}{{l}}* =e/2 and {e}{{h}}* =3e/2, accessible at low and high bias voltages, respectively. We show that while the low-energy effective charge {e}{{l}}* is sensitive to thermal fluctuations of the current, the high-energy effective charge {e}{{h}}* is robust against thermal noise. A unique fluctuation signature of Majorana fermions is therefore encoded in the high-voltage tails of the electric current noise easily accessible in experiments on strongly non-equilibrium systems even at high temperatures.

  12. Modelling transient heat conduction in solids at multiple length and time scales: A coupled non-equilibrium molecular dynamics/continuum approach

    SciTech Connect

    Jolley, Kenny; Gill, Simon P.A.

    2009-10-20

    A method for controlling the thermal boundary conditions of non-equilibrium molecular dynamics simulations is presented. The method is simple to implement into a conventional molecular dynamics code and independent of the atomistic model employed. It works by regulating the temperature in a thermostatted boundary region by feedback control to achieve the desired temperature at the edge of an inner region where the true atomistic dynamics are retained. This is necessary to avoid intrinsic boundary effects in non-equilibrium molecular dynamics simulations. Three thermostats are investigated: the global deterministic Nose-Hoover thermostat and two local stochastic thermostats, Langevin and stadium damping. The latter thermostat is introduced to avoid the adverse reflection of phonons that occurs at an abrupt interface. The method is then extended to allow atomistic/continuum models to be thermally coupled concurrently for the analysis of large steady state and transient heat conduction problems. The effectiveness of the algorithm is demonstrated for the example of heat flow down a three-dimensional atomistic rod of uniform cross-section subjected to a variety of boundary conditions.

  13. Local non-equilibrium thermodynamics.

    PubMed

    Jinwoo, Lee; Tanaka, Hajime

    2015-01-16

    Local Shannon entropy lies at the heart of modern thermodynamics, with much discussion of trajectory-dependent entropy production. When taken at both boundaries of a process in phase space, it reproduces the second law of thermodynamics over a finite time interval for small scale systems. However, given that entropy is an ensemble property, it has never been clear how one can assign such a quantity locally. Given such a fundamental omission in our knowledge, we construct a new ensemble composed of trajectories reaching an individual microstate, and show that locally defined entropy, information, and free energy are properties of the ensemble, or trajectory-independent true thermodynamic potentials. We find that the Boltzmann-Gibbs distribution and Landauer's principle can be generalized naturally as properties of the ensemble, and that trajectory-free state functions of the ensemble govern the exact mechanism of non-equilibrium relaxation.

  14. Non-equilibrium in cosmology

    NASA Astrophysics Data System (ADS)

    Pietroni, M.

    2009-02-01

    All the non-trivial features of the Universe we see around us, such as particles, stars, galaxies, and clusters of galaxies, are the result of non-equilibrium processes in the cosmic evolution. These lectures aim to provide some general background in cosmology and to examine specific, and notable, examples of departures from thermal equilibrium. They are organized as follows: 1) Overview of the thermal history of the Universe after the Big Bang: the relevant time-scales and the mechanism of particle decoupling from the themal bath; 2) Explicit examples of cosmic relics: nucleosynthesis, photons and the cosmic microwave background, neutrinos, and cold dark matter; 3) Baryogenesis: the generation of the baryon asymmetry of the Universe; 4) The formation of cosmic structures (galaxies, clusters of galaxies): from the Vlasov equation to the renormalization group.

  15. Local non-equilibrium thermodynamics

    PubMed Central

    Jinwoo, Lee; Tanaka, Hajime

    2015-01-01

    Local Shannon entropy lies at the heart of modern thermodynamics, with much discussion of trajectory-dependent entropy production. When taken at both boundaries of a process in phase space, it reproduces the second law of thermodynamics over a finite time interval for small scale systems. However, given that entropy is an ensemble property, it has never been clear how one can assign such a quantity locally. Given such a fundamental omission in our knowledge, we construct a new ensemble composed of trajectories reaching an individual microstate, and show that locally defined entropy, information, and free energy are properties of the ensemble, or trajectory-independent true thermodynamic potentials. We find that the Boltzmann-Gibbs distribution and Landauer's principle can be generalized naturally as properties of the ensemble, and that trajectory-free state functions of the ensemble govern the exact mechanism of non-equilibrium relaxation. PMID:25592077

  16. Non-equilibrium in low-temperature plasmas

    NASA Astrophysics Data System (ADS)

    Taccogna, Francesco; Dilecce, Giorgio

    2016-11-01

    The wide range of applications of cold plasmas originates from their special characteristic of being a physical system out of thermodynamic equilibrium. This property enhances its reactivity at low gas temperature and allows to obtain macroscopic effects with a moderate energy consumption. In this review, the basic concepts of non-equilibrium in ionized gases are treated by showing why and how non-equilibrium functions of the degrees of freedom are formed in a variety of natural and man-made plasmas with particular emphasis on the progress made in the last decade. The modern point of view of a molecular basis of non-equilibrium and of a state-to-state kinetic approach is adopted. Computational and diagnostic techniques used to investigate the non-equilibrium conditions are also surveyed.

  17. Non-equilibrium Dynamics of DNA Nanotubes

    NASA Astrophysics Data System (ADS)

    Hariadi, Rizal Fajar

    nanotubes with an irreversible energy consumption reaction, analogous to nucleotide hydrolysis in actin and microtubule polymerization. Finally, we integrated the DNA strand displacement circuits with DNA nanotube polymerization to achieve programmable kinetic control of behavior within artificial cytoskeleton. Our synthetic approach may provide insights into natural cytoskeleton dynamics, such as minimal architectural or reaction mechanism requirements for non-equilibrium behaviors including treadmilling and dynamic instability. The outgrowth of DNA nanotechnology beyond its own boundaries, serving as a general model system for biomolecular dynamics, can lead to an understanding of molecular processes that advances both basic and applied sciences.

  18. Non-equilibrium dynamics from RPMD and CMD

    NASA Astrophysics Data System (ADS)

    Welsch, Ralph; Song, Kai; Shi, Qiang; Althorpe, Stuart C.; Miller, Thomas F.

    2016-11-01

    We investigate the calculation of approximate non-equilibrium quantum time correlation functions (TCFs) using two popular path-integral-based molecular dynamics methods, ring-polymer molecular dynamics (RPMD) and centroid molecular dynamics (CMD). It is shown that for the cases of a sudden vertical excitation and an initial momentum impulse, both RPMD and CMD yield non-equilibrium TCFs for linear operators that are exact for high temperatures, in the t = 0 limit, and for harmonic potentials; the subset of these conditions that are preserved for non-equilibrium TCFs of non-linear operators is also discussed. Furthermore, it is shown that for these non-equilibrium initial conditions, both methods retain the connection to Matsubara dynamics that has previously been established for equilibrium initial conditions. Comparison of non-equilibrium TCFs from RPMD and CMD to Matsubara dynamics at short times reveals the orders in time to which the methods agree. Specifically, for the position-autocorrelation function associated with sudden vertical excitation, RPMD and CMD agree with Matsubara dynamics up to O (t4) and O (t1) , respectively; for the position-autocorrelation function associated with an initial momentum impulse, RPMD and CMD agree with Matsubara dynamics up to O (t5) and O (t2) , respectively. Numerical tests using model potentials for a wide range of non-equilibrium initial conditions show that RPMD and CMD yield non-equilibrium TCFs with an accuracy that is comparable to that for equilibrium TCFs. RPMD is also used to investigate excited-state proton transfer in a system-bath model, and it is compared to numerically exact calculations performed using a recently developed version of the Liouville space hierarchical equation of motion approach; again, similar accuracy is observed for non-equilibrium and equilibrium initial conditions.

  19. Non-equilibrium dynamics from RPMD and CMD.

    PubMed

    Welsch, Ralph; Song, Kai; Shi, Qiang; Althorpe, Stuart C; Miller, Thomas F

    2016-11-28

    We investigate the calculation of approximate non-equilibrium quantum time correlation functions (TCFs) using two popular path-integral-based molecular dynamics methods, ring-polymer molecular dynamics (RPMD) and centroid molecular dynamics (CMD). It is shown that for the cases of a sudden vertical excitation and an initial momentum impulse, both RPMD and CMD yield non-equilibrium TCFs for linear operators that are exact for high temperatures, in the t = 0 limit, and for harmonic potentials; the subset of these conditions that are preserved for non-equilibrium TCFs of non-linear operators is also discussed. Furthermore, it is shown that for these non-equilibrium initial conditions, both methods retain the connection to Matsubara dynamics that has previously been established for equilibrium initial conditions. Comparison of non-equilibrium TCFs from RPMD and CMD to Matsubara dynamics at short times reveals the orders in time to which the methods agree. Specifically, for the position-autocorrelation function associated with sudden vertical excitation, RPMD and CMD agree with Matsubara dynamics up to O(t(4)) and O(t(1)), respectively; for the position-autocorrelation function associated with an initial momentum impulse, RPMD and CMD agree with Matsubara dynamics up to O(t(5)) and O(t(2)), respectively. Numerical tests using model potentials for a wide range of non-equilibrium initial conditions show that RPMD and CMD yield non-equilibrium TCFs with an accuracy that is comparable to that for equilibrium TCFs. RPMD is also used to investigate excited-state proton transfer in a system-bath model, and it is compared to numerically exact calculations performed using a recently developed version of the Liouville space hierarchical equation of motion approach; again, similar accuracy is observed for non-equilibrium and equilibrium initial conditions.

  20. Spin-polarization and spin-dependent logic gates in a double quantum ring based on Rashba spin-orbit effect: Non-equilibrium Green's function approach

    SciTech Connect

    Eslami, Leila Esmaeilzadeh, Mahdi

    2014-02-28

    Spin-dependent electron transport in an open double quantum ring, when each ring is made up of four quantum dots and threaded by a magnetic flux, is studied. Two independent and tunable gate voltages are applied to induce Rashba spin-orbit effect in the quantum rings. Using non-equilibrium Green's function formalism, we study the effects of electron-electron interaction on spin-dependent electron transport and show that although the electron-electron interaction induces an energy gap, it has no considerable effect when the bias voltage is sufficiently high. We also show that the double quantum ring can operate as a spin-filter for both spin up and spin down electrons. The spin-polarization of transmitted electrons can be tuned from −1 (pure spin-down current) to +1 (pure spin-up current) by changing the magnetic flux and/or the gates voltage. Also, the double quantum ring can act as AND and NOR gates when the system parameters such as Rashba coefficient are properly adjusted.

  1. Non-equilibrium Thermodynamics and Conformal Field Theory

    NASA Astrophysics Data System (ADS)

    Hollands, Stefan; Longo, Roberto

    2017-07-01

    We present a model independent, operator algebraic approach to non-equilibrium quantum thermodynamics within the framework of two-dimensional Conformal Field Theory. Two infinite reservoirs in equilibrium at their own temperatures and chemical potentials are put in contact through a defect line, possibly by inserting a probe. As time evolves, the composite system then approaches a non-equilibrium steady state that we describe. In particular, we re-obtain recent formulas of Bernard and Doyon (Ann Henri Poincaré 16:113-161, 2015).

  2. Non equilibrium statistical mechanics of geophysical flows

    NASA Astrophysics Data System (ADS)

    Bouchet, F.

    2012-04-01

    Onsager first proposed to explain the self organization of turbulent flows using the statistical mechanics framework. Generalization of those ideas to the class of 2D-Euler and Quasi-Gestrophic models led to the Robert-Sommeria-Miller theory. This approach was successful in modeling many geophysical phenomena: the Great Red Spot of Jupiter [2, 1], drift of mesoscale ocean vortices [3, 1], self-organization of Quasi-Geostrophic dynamics in mid-basin jets similar to the Gulf-Stream and the Kuroshio [3, 1], and so on. However, this type of equilibrium theories fail to take into account forces and dissipation. This is a strong limitation for many geophysical phenomena. Interestingly, it is possible to circumvent these difficulties using the most modern theoretical development of non-equilibrium statistical mechanics: large deviation [4] and instanton theories. As an example, we will discuss geophysical turbulent flows which have more than one attractor (bistability or mutistability). For instance, paths of the Kuroshio [5], the Earth's magnetic field reversal, atmospheric flows [6], MHD experiments [7], 2D turbulence experiments [8, 9], 3D flows [10] show this kind of behavior. On Navier-Stokes and Quasi-Geostrophic turbulent flows, we predict the conditions for existence of rare transitions between attractors, and the dynamics of those transitions. We discuss how these results are probably connected to the long debated existence of multi-stability in the atmosphere and oceans, and how non-equilibrium statistical mechanics can allow to settle this issue. Generalization of statistical mechanics to more comprehensive hydrodynamical models, which include gravity wave dynamics and allow for the possibility of energy transfer through wave motion, would be extremely interesting. Namely, both are essential in understanding energy balance of geophysical flows. However, due to difficulties in essential theoretical parts of the statistical mechanics approach, previous methods

  3. Non-equilibrium thermodynamics of gravitational screens

    NASA Astrophysics Data System (ADS)

    Freidel, Laurent; Yokokura, Yuki

    2015-11-01

    We study the Einstein gravity equations projected on a timelike surface, which represents the time evolution of what we call a gravitational screen. We show that such a screen behaves like a viscous bubble with a surface tension and an internal energy, and that the Einstein equations take the same forms as non-equilibrium thermodynamic equations for a viscous bubble. We provide a consistent dictionary between gravitational and thermodynamic variables. In the non-viscous cases there are three thermodynamic equations that characterize a bubble dynamics: these are the first law, the Marangoni flow equation and the Young-Laplace equation. In all three equations the surface tension plays a central role: in the first law it appears as a work term per unit area, in the Marangoni flow its gradient drives a force, and in the Young-Laplace equation it contributes to a pressure proportional to the surface curvature. The gravity equations appear as a natural generalization of these bubble equations when the bubble itself is viscous and dynamical. In particular, this approach shows that the mechanism of entropy production for the viscous bubble is mapped onto the production of gravitational waves. We also review the relationship between surface tension and temperature, and discuss black-hole thermodynamics.

  4. Aerospace Applications of Non-Equilibrium Plasma

    NASA Technical Reports Server (NTRS)

    Blankson, Isaiah M.

    2016-01-01

    Nonequilibrium plasma/non-thermal plasma/cold plasmas are being used in a wide range of new applications in aeronautics, active flow control, heat transfer reduction, plasma-assisted ignition and combustion, noise suppression, and power generation. Industrial applications may be found in pollution control, materials surface treatment, and water purification. In order for these plasma processes to become practical, efficient means of ionization are necessary. A primary challenge for these applications is to create a desired non-equilibrium plasma in air by preventing the discharge from transitioning into an arc. Of particular interest is the impact on simulations and experimental data with and without detailed consideration of non-equilibrium effects, and the consequences of neglecting non-equilibrium. This presentation will provide an assessment of the presence and influence of non-equilibrium phenomena for various aerospace needs and applications. Specific examples to be considered will include the forward energy deposition of laser-induced non-equilibrium plasmoids for sonic boom mitigation, weakly ionized flows obtained from pulsed nanosecond discharges for an annular Hall type MHD generator duct for turbojet energy bypass, and fundamental mechanisms affecting the design and operation of novel plasma-assisted reactive systems in dielectric liquids (water purification, in-pipe modification of fuels, etc.).

  5. Numerical simulation of coupled state-to-state kinetics and heat transfer in viscous non-equilibrium flows

    NASA Astrophysics Data System (ADS)

    Kunova, O.; Kustova, E.; Mekhonoshina, M.; Shoev, G.

    2016-11-01

    The influence of vibrational-dissociation kinetics on mass and heat transfer in non-equilibrium flows of N2/N and O2/O mixtures behind shock waves is investigated on the basis of the state-to-state approach. A method of the numerical solution of coupled equations of gas dynamics and state-to-state kinetics in the commercial flow solver ANSYS Fluent is proposed. Based on the proposed numerical tool, the flows near a cone and behind a planar shock wave are studied. The calculation results are compared with available experimental data.

  6. A non-equilibrium Monte Carlo renormalization-group approach based upon the microscopic master equation applied to the three-state driven lattice gas

    NASA Astrophysics Data System (ADS)

    Georgiev, Ivan T.; McKay, Susan R.

    2005-12-01

    We present a general position-space renormalization-group approach for systems in steady states far from equilibrium and illustrate its application to the three-state driven lattice gas. The method is based upon the possibility of a closed form representation of the parameters controlling transition rates of the system in terms of the steady state probability distribution of small clusters, arising from the application of the master equations to small clusters. This probability distribution on various length scales is obtained through a Monte Carlo algorithm on small lattices, which then yields a mapping between parameters on different length scales. The renormalization-group flows indicate the phase diagram, analogous to equilibrium treatments. For the three-state driven lattice gas, we have implemented this procedure and compared the resulting phase diagrams with those obtained directly from simulations. Results in general show the expected topology with one exception. For high densities, an unexpected additional fixed point emerges, which can be understood qualitatively by comparing it with the fixed point of the fully asymmetric exclusion process.

  7. Flux-split algorithms for flows with non-equilibrium chemistry and thermodynamics

    NASA Astrophysics Data System (ADS)

    Cinnella, Pasquale

    New flux-split algorithms are developed for high velocity, high temperature flow situations, when finite-rate chemistry and non-equilibrium thermodynamics greatly affect the physics of the problem. Two-vector-split algorithms, of the Steger-Warming and of the Van Leer type, and one flux-difference-split algorithm of the Roe type are established and utilized for the accurate numerical simulation of flows with dissociation, ionization, and combustion phenomena. Several thermodynamic models are used, including a simplified vibrational non-eqilibrium model and an equilibrium model based upon refined statistical mechanical properties. The framework provided is flexible enough to accommodate virtually any chemical model and a wide range of non-equilibrium, multi-temperature thermodynamic models. A theoretical study of the main features of flows with free electrons, for conditions that require the use of two translational temperatures in the thermal model, is developed. A simple but powerful asymptotic analysis is developed which allows the establishment of the fundamental gas dynamic properties of flows with multiple translational temperatures. The new algorithms developed demonstrate their accuracy and robustness for challenging flow problems. The influence of several assumptions on the chemical and thermal behavior of the flows is investigated, and a comparison with results obtained using different numerical approaches, in particular spectral methods, is provided, and proves to be favorable to the present techniques.

  8. Non-equilibrium simulation of CH4 production through the depressurization method from gas hydrate reservoirs

    NASA Astrophysics Data System (ADS)

    Qorbani, Khadijeh; Kvamme, Bjørn

    2016-04-01

    Natural gas hydrates (NGHs) in nature are formed from various hydrate formers (i.e. aqueous, gas, and adsorbed phases). As a result, due to Gibbs phase rule and the combined first and second laws of thermodynamics CH4-hydrate cannot reach thermodynamic equilibrium in real reservoir conditions. CH4 is the dominant component in NGH reservoirs. It is formed as a result of biogenic degradation of biological material in the upper few hundred meters of subsurface. It has been estimated that the amount of fuel-gas reserve in NGHs exceed the total amount of fossil fuel explored until today. Thus, these reservoirs have the potential to satisfy the energy requirements of the future. However, released CH4 from dissociated NGHs could find its way to the atmosphere and it is a far more aggressive greenhouse gas than CO2, even though its life-time is shorter. Lack of reliable field data makes it difficult to predict the production potential, as well as safety of CH4 production from NGHs. Computer simulations can be used as a tool to investigate CH4 production through different scenarios. Most hydrate simulators within academia and industry treat hydrate phase transitions as an equilibrium process and those which employ the kinetic approach utilize simple laboratory data in their models. Furthermore, it is typical to utilize a limited thermodynamic description where only temperature and pressure projections are considered. Another widely used simplification is to assume only a single route for the hydrate phase transitions. The non-equilibrium nature of hydrate indicates a need for proper kinetic models to describe hydrate dissociation and reformation in the reservoir with respect to thermodynamics variables, CH4 mole-fraction, pressure and temperature. The RetrasoCodeBright (RCB) hydrate simulator has previously been extended to model CH4-hydrate dissociation towards CH4 gas and water. CH4-hydrate is added to the RCB data-base as a pseudo mineral. Phase transitions are treated

  9. Evolution of specialization under non-equilibrium population dynamics.

    PubMed

    Nurmi, Tuomas; Parvinen, Kalle

    2013-03-21

    We analyze the evolution of specialization in resource utilization in a mechanistically underpinned discrete-time model using the adaptive dynamics approach. We assume two nutritionally equivalent resources that in the absence of consumers grow sigmoidally towards a resource-specific carrying capacity. The consumers use resources according to the law of mass-action with rates involving trade-off. The resulting discrete-time model for the consumer population has over-compensatory dynamics. We illuminate the way non-equilibrium population dynamics affect the evolutionary dynamics of the resource consumption rates, and show that evolution to the trimorphic coexistence of a generalist and two specialists is possible due to asynchronous non-equilibrium population dynamics of the specialists. In addition, various forms of cyclic evolutionary dynamics are possible. Furthermore, evolutionary suicide may occur even without Allee effects and demographic stochasticity.

  10. General multi-group macroscopic modeling for thermo-chemical non-equilibrium gas mixtures

    SciTech Connect

    Liu, Yen Vinokur, Marcel; Panesi, Marco; Sahai, Amal

    2015-04-07

    This paper opens a new door to macroscopic modeling for thermal and chemical non-equilibrium. In a game-changing approach, we discard conventional theories and practices stemming from the separation of internal energy modes and the Landau-Teller relaxation equation. Instead, we solve the fundamental microscopic equations in their moment forms but seek only optimum representations for the microscopic state distribution function that provides converged and time accurate solutions for certain macroscopic quantities at all times. The modeling makes no ad hoc assumptions or simplifications at the microscopic level and includes all possible collisional and radiative processes; it therefore retains all non-equilibrium fluid physics. We formulate the thermal and chemical non-equilibrium macroscopic equations and rate coefficients in a coupled and unified fashion for gases undergoing completely general transitions. All collisional partners can have internal structures and can change their internal energy states after transitions. The model is based on the reconstruction of the state distribution function. The internal energy space is subdivided into multiple groups in order to better describe non-equilibrium state distributions. The logarithm of the distribution function in each group is expressed as a power series in internal energy based on the maximum entropy principle. The method of weighted residuals is applied to the microscopic equations to obtain macroscopic moment equations and rate coefficients succinctly to any order. The model’s accuracy depends only on the assumed expression of the state distribution function and the number of groups used and can be self-checked for accuracy and convergence. We show that the macroscopic internal energy transfer, similar to mass and momentum transfers, occurs through nonlinear collisional processes and is not a simple relaxation process described by, e.g., the Landau-Teller equation. Unlike the classical vibrational energy

  11. General multi-group macroscopic modeling for thermo-chemical non-equilibrium gas mixtures

    NASA Astrophysics Data System (ADS)

    Liu, Yen; Panesi, Marco; Sahai, Amal; Vinokur, Marcel

    2015-04-01

    This paper opens a new door to macroscopic modeling for thermal and chemical non-equilibrium. In a game-changing approach, we discard conventional theories and practices stemming from the separation of internal energy modes and the Landau-Teller relaxation equation. Instead, we solve the fundamental microscopic equations in their moment forms but seek only optimum representations for the microscopic state distribution function that provides converged and time accurate solutions for certain macroscopic quantities at all times. The modeling makes no ad hoc assumptions or simplifications at the microscopic level and includes all possible collisional and radiative processes; it therefore retains all non-equilibrium fluid physics. We formulate the thermal and chemical non-equilibrium macroscopic equations and rate coefficients in a coupled and unified fashion for gases undergoing completely general transitions. All collisional partners can have internal structures and can change their internal energy states after transitions. The model is based on the reconstruction of the state distribution function. The internal energy space is subdivided into multiple groups in order to better describe non-equilibrium state distributions. The logarithm of the distribution function in each group is expressed as a power series in internal energy based on the maximum entropy principle. The method of weighted residuals is applied to the microscopic equations to obtain macroscopic moment equations and rate coefficients succinctly to any order. The model's accuracy depends only on the assumed expression of the state distribution function and the number of groups used and can be self-checked for accuracy and convergence. We show that the macroscopic internal energy transfer, similar to mass and momentum transfers, occurs through nonlinear collisional processes and is not a simple relaxation process described by, e.g., the Landau-Teller equation. Unlike the classical vibrational energy

  12. General multi-group macroscopic modeling for thermo-chemical non-equilibrium gas mixtures.

    PubMed

    Liu, Yen; Panesi, Marco; Sahai, Amal; Vinokur, Marcel

    2015-04-07

    This paper opens a new door to macroscopic modeling for thermal and chemical non-equilibrium. In a game-changing approach, we discard conventional theories and practices stemming from the separation of internal energy modes and the Landau-Teller relaxation equation. Instead, we solve the fundamental microscopic equations in their moment forms but seek only optimum representations for the microscopic state distribution function that provides converged and time accurate solutions for certain macroscopic quantities at all times. The modeling makes no ad hoc assumptions or simplifications at the microscopic level and includes all possible collisional and radiative processes; it therefore retains all non-equilibrium fluid physics. We formulate the thermal and chemical non-equilibrium macroscopic equations and rate coefficients in a coupled and unified fashion for gases undergoing completely general transitions. All collisional partners can have internal structures and can change their internal energy states after transitions. The model is based on the reconstruction of the state distribution function. The internal energy space is subdivided into multiple groups in order to better describe non-equilibrium state distributions. The logarithm of the distribution function in each group is expressed as a power series in internal energy based on the maximum entropy principle. The method of weighted residuals is applied to the microscopic equations to obtain macroscopic moment equations and rate coefficients succinctly to any order. The model's accuracy depends only on the assumed expression of the state distribution function and the number of groups used and can be self-checked for accuracy and convergence. We show that the macroscopic internal energy transfer, similar to mass and momentum transfers, occurs through nonlinear collisional processes and is not a simple relaxation process described by, e.g., the Landau-Teller equation. Unlike the classical vibrational energy

  13. Non-equilibrium processes by a gas phase synthesis of diamond

    NASA Astrophysics Data System (ADS)

    Rebrov, A. K.; Yudin, I. B.

    2016-11-01

    The analysis of influence of heterogeneous reactions in rarefied gas flows with dissociation and recombination is carried on for the first time, at least for hydrogen and methane flows. The flow in channels with heterogeneous reaction can be equilibrium and non-equilibrium, depending on a flow rate. Non-equilibrium effects are pronounced as a rule in the space between channel exit and substrate, where the activated gas flow to the surface of diamond deposition is formed. The gas dynamic analysis of gas jet deposition of diamond facilitates the optimization of experiments and their analysis.

  14. Adaptive Implicit Non-Equilibrium Radiation Diffusion

    SciTech Connect

    Philip, Bobby; Wang, Zhen; Berrill, Mark A; Rodriguez Rodriguez, Manuel; Pernice, Michael

    2013-01-01

    We describe methods for accurate and efficient long term time integra- tion of non-equilibrium radiation diffusion systems: implicit time integration for effi- cient long term time integration of stiff multiphysics systems, local control theory based step size control to minimize the required global number of time steps while control- ling accuracy, dynamic 3D adaptive mesh refinement (AMR) to minimize memory and computational costs, Jacobian Free Newton-Krylov methods on AMR grids for efficient nonlinear solution, and optimal multilevel preconditioner components that provide level independent solver convergence.

  15. Turbulence modeling for non-equilibrium flow

    NASA Technical Reports Server (NTRS)

    Durbin, P. A.

    1995-01-01

    The work performed during this year has involved further assessment and extension of the k-epsilon-v(exp 2) model, and initiation of work on scalar transport. The latter is introduced by the contribution of Y. Shabany to this volume. Flexible, computationally tractable models are needed for engineering CFD. As computational technology has progressed, the ability and need to use elaborate turbulence closure models has increased. The objective of our work is to explore and develop new analytical frameworks that might extend the applicability of the modeling techniques. In past years the development of a method for near-wall modeling was described. The method has been implemented into a CFD code and its viability has been demonstrated by various test cases. Further tests are reported herein. Non-equilibrium near-wall models are needed for some heat transfer applications. Scalar transport seems generally to be more sensitive to non-equilibrium effects than is momentum transport. For some applications turbulence anisotropy plays a role and an estimate of the full Reynolds stress tensor is needed. We have begun work on scalar transport per se, but in this brief I will only report on an extension of the k-epsilon-v(exp 2) model to predict the Reynolds stress tensor.

  16. In command of non-equilibrium.

    PubMed

    Roduner, Emil; Radhakrishnan, Shankara Gayathri

    2016-05-21

    The second law of thermodynamics is well known for determining the direction of spontaneous processes in the laboratory, life and the universe. It is therefore often called the arrow of time. Less often discussed but just as important is the effect of kinetic barriers which intercept equilibration and preserve highly ordered, high energy non-equilibrium states. Examples of such states are many modern materials produced intentionally for technological applications. Furthermore, all living organisms fuelled directly by photosynthesis and those fuelled indirectly by living on high energy nutrition represent preserved non-equilibrium states. The formation of these states represents the local reversal of the arrow of time which only seemingly violates the second law. It has been known since the seminal work of Prigogine that the stabilisation of these states inevitably requires the dissipation of energy in the form of waste heat. It is this feature of waste heat dissipation following the input of energy that drives all processes occurring at a non-zero rate. Photosynthesis, replication of living organisms, self-assembly, crystal shape engineering and distillation have this principle in common with the well-known Carnot cycle in the heat engine. Drawing on this analogy, we subsume these essential and often sophisticated driven processes under the term machinery of life.

  17. Non-equilibrium many body dynamics

    SciTech Connect

    Creutz, M.; Gyulassy, M.

    1997-09-22

    This Riken BNL Research Center Symposium on Non-Equilibrium Many Body Physics was held on September 23-25, 1997 as part of the official opening ceremony of the Center at Brookhaven National Lab. A major objective of theoretical work at the center is to elaborate on the full spectrum of strong interaction physics based on QCD, including the physics of confinement and chiral symmetry breaking, the parton structure of hadrons and nuclei, and the phenomenology of ultra-relativistic nuclear collisions related to the up-coming experiments at RHIC. The opportunities and challenges of nuclear and particle physics in this area naturally involve aspects of the many body problem common to many other fields. The aim of this symposium was to find common theoretical threads in the area of non-equilibrium physics and modern transport theories. The program consisted of invited talks on a variety topics from the fields of atomic, condensed matter, plasma, astrophysics, cosmology, and chemistry, in addition to nuclear and particle physics. Separate abstracts have been indexed into the database for contributions to this workshop.

  18. Why Non-Equilibrium is Different

    NASA Astrophysics Data System (ADS)

    Dorfman, J. Robert; Kirkpatrick, Theodore R.; Sengers, Jan V.

    The 1970 paper, "Decay of the Velocity Correlation Function" [Phys. Rev. A1, 18 (1970), see also Phys. Rev. Lett. 18, 988, (1967)] by Berni Alder and Tom Wainwright, demonstrated, by means of computer simulations, that the velocity autocorrelation function for a particle moving diffusively in a gas of hard disks decays algebraically in time as t-1, and as t-3/2 for a gas of hard spheres. These decays appear in non-equilibrium fluids and have no counterpart in fluids in thermodynamic equilibrium. The work of Alder and Wainwright stimulated theorists to find explanations for these "long time tails" using kinetic theory or a mesoscopic mode-coupling theory. This paper has had a profound influence on our understanding of the non-equilibrium properties of fluid systems. Here we discuss the kinetic origins of the long time tails, the microscopic foundations of modecoupling theory, and the implications of these results for the physics of fluids. We also mention applications of the long time tails and mode-coupling theory to other, seemingly unrelated, fields of physics. We are honored to dedicate this short review to Berni Alder on the occasion of his 90th birthday!

  19. Comment on the Article ``Relativistic Non-Equilibrium Thermodynamics Revisited''

    NASA Astrophysics Data System (ADS)

    Muschik, Wolfgang; von Borzeszkowski, Horst-Heino

    2007-05-01

    There are two problematic items in García-Colín and Sandoval-Villalbazo's approach to “relativistic non-equilibrium thermodynamics” (L.S. García- Colín and A. Sandoval-Villalbazo, J. Non-Equilib. Thermodyn. 31, 2006, pp. 11-22). The paper does not follow the fundamentals of relativity theory; according to them, the energy-momentum tensor (EMT) has to include all energies of the considered system. Secondly, strange thermodynamic consequences result by using the presuppositions made by the authors. The paper is critically discussed and some shortcomings are elucidated.

  20. Optical Properties in Non-equilibrium Phase Transitions

    SciTech Connect

    Ao, T; Ping, Y; Widmann, K; Price, D F; Lee, E; Tam, H; Springer, P T; Ng, A

    2006-01-05

    An open question about the dynamical behavior of materials is how phase transition occurs in highly non-equilibrium systems. One important class of study is the excitation of a solid by an ultrafast, intense laser. The preferential heating of electrons by the laser field gives rise to initial states dominated by hot electrons in a cold lattice. Using a femtosecond laser pump-probe approach, we have followed the temporal evolution of the optical properties of such a system. The results show interesting correlation to non-thermal melting and lattice disordering processes. They also reveal a liquid-plasma transition when the lattice energy density reaches a critical value.

  1. Dissipation in non-equilibrium turbulence

    NASA Astrophysics Data System (ADS)

    Bos, Wouter; Rubinstein, Robert

    2016-11-01

    For about a decade, experimental and numerical studies have reported on the existence of an anomalous behaviour of the viscous dissipation rate in unsteady turbulence (see for instance Vassilicos, Annu. Rev. Fluid Mech. 2015). It appears that the short-time transient dynamics can be described by a universal power law, incompatible with Taylor's 1935 dissipation rate estimate. We show that these results can be explained using a non-equilibrium energy distribution, obtained from a low-frequency perturbative expansion of simple spectral closure. The resulting description is fairly simple. In particular, during the transient, according to the predictions, the normalized dissipation rate Cɛ evolves as a function of the Taylor-scale Reynolds number Rλ following the relation Cɛ Rλ- 15 / 14 , in close agreement with experimental and numerical observations.

  2. Non-equilibrium quantum heat machines

    NASA Astrophysics Data System (ADS)

    Alicki, Robert; Gelbwaser-Klimovsky, David

    2015-11-01

    Standard heat machines (engine, heat pump, refrigerator) are composed of a system (working fluid) coupled to at least two equilibrium baths at different temperatures and periodically driven by an external device (piston or rotor) sometimes called the work reservoir. The aim of this paper is to go beyond this scheme by considering environments which are stationary but cannot be decomposed into a few baths at thermal equilibrium. Such situations are important, for example in solar cells, chemical machines in biology, various realizations of laser cooling or nanoscopic machines driven by laser radiation. We classify non-equilibrium baths depending on their thermodynamic behavior and show that the efficiency of heat machines powered by them is limited by the generalized Carnot bound.

  3. A facilitated diffusion model constrained by the probability isotherm: a pedagogical exercise in intuitive non-equilibrium thermodynamics.

    PubMed

    Chapman, Brian

    2017-06-01

    This paper seeks to develop a more thermodynamically sound pedagogy for students of biological transport than is currently available from either of the competing schools of linear non-equilibrium thermodynamics (LNET) or Michaelis-Menten kinetics (MMK). To this end, a minimal model of facilitated diffusion was constructed comprising four reversible steps: cis-substrate binding, cis→trans bound enzyme shuttling, trans-substrate dissociation and trans→cis free enzyme shuttling. All model parameters were subject to the second law constraint of the probability isotherm, which determined the unidirectional and net rates for each step and for the overall reaction through the law of mass action. Rapid equilibration scenarios require sensitive 'tuning' of the thermodynamic binding parameters to the equilibrium substrate concentration. All non-equilibrium scenarios show sigmoidal force-flux relations, with only a minority of cases having their quasi-linear portions close to equilibrium. Few cases fulfil the expectations of MMK relating reaction rates to enzyme saturation. This new approach illuminates and extends the concept of rate-limiting steps by focusing on the free energy dissipation associated with each reaction step and thereby deducing its respective relative chemical impedance. The crucial importance of an enzyme's being thermodynamically 'tuned' to its particular task, dependent on the cis- and trans-substrate concentrations with which it deals, is consistent with the occurrence of numerous isoforms for enzymes that transport a given substrate in physiologically different circumstances. This approach to kinetic modelling, being aligned with neither MMK nor LNET, is best described as intuitive non-equilibrium thermodynamics, and is recommended as a useful adjunct to the design and interpretation of experiments in biotransport.

  4. A facilitated diffusion model constrained by the probability isotherm: a pedagogical exercise in intuitive non-equilibrium thermodynamics

    PubMed Central

    2017-01-01

    This paper seeks to develop a more thermodynamically sound pedagogy for students of biological transport than is currently available from either of the competing schools of linear non-equilibrium thermodynamics (LNET) or Michaelis–Menten kinetics (MMK). To this end, a minimal model of facilitated diffusion was constructed comprising four reversible steps: cis-substrate binding, cis→trans bound enzyme shuttling, trans-substrate dissociation and trans→cis free enzyme shuttling. All model parameters were subject to the second law constraint of the probability isotherm, which determined the unidirectional and net rates for each step and for the overall reaction through the law of mass action. Rapid equilibration scenarios require sensitive ‘tuning’ of the thermodynamic binding parameters to the equilibrium substrate concentration. All non-equilibrium scenarios show sigmoidal force–flux relations, with only a minority of cases having their quasi-linear portions close to equilibrium. Few cases fulfil the expectations of MMK relating reaction rates to enzyme saturation. This new approach illuminates and extends the concept of rate-limiting steps by focusing on the free energy dissipation associated with each reaction step and thereby deducing its respective relative chemical impedance. The crucial importance of an enzyme's being thermodynamically ‘tuned’ to its particular task, dependent on the cis- and trans-substrate concentrations with which it deals, is consistent with the occurrence of numerous isoforms for enzymes that transport a given substrate in physiologically different circumstances. This approach to kinetic modelling, being aligned with neither MMK nor LNET, is best described as intuitive non-equilibrium thermodynamics, and is recommended as a useful adjunct to the design and interpretation of experiments in biotransport. PMID:28680687

  5. Non-equilibrium reaction rates in air flows behind shock waves. State-to-state and three-temperature description

    NASA Astrophysics Data System (ADS)

    Kunova, O.; Nagnibeda, E.; Sharafutdinov, I.

    2016-11-01

    Non-equilibrium reaction rates in the flows of the five-component air mixture N2/O2/NO/N/O in the relaxation zone behind shock waves are studied on the basis of the state-to-state, three-temperature and one-temperature kinetic theory approaches. State-dependent rate coefficients for N2 and O2 dissociation and Zeldovich exchange reactions are averaged using 1) state-to-state vibrational distributions, 2) two-temperature Treanor distributions and 3) thermal equilibrium distributions. Variation of global reaction rate coefficients obtained in different approaches along the relaxation zone is studied numerically for free stream Mach number M = 13 and difflerences between reaction rate coefficients found in the frame of the state-to-state and more simple kinetic models are evaluated.

  6. Kinetic Effects of Non-Equilibrium Plasma on Partially Premixed Flame Extinction

    DTIC Science & Technology

    2011-01-01

    dissociative attachment processes. The Boltzmann equation calculates the rate coefficients of the electron impact elementary reactions by averaging the...ion-ion neutralization processes, ion-molecule reactions, and electron attachment and detachment processes. Note that the present model does not solve...partially premixed methane flames was studied at 60 Torr by blending 2% CH4 into the oxidizer stream. The non-equilibrium discharge accelerated

  7. Turbulence as a Problem in Non-equilibrium Statistical Mechanics

    NASA Astrophysics Data System (ADS)

    Goldenfeld, Nigel; Shih, Hong-Yan

    2016-12-01

    The transitional and well-developed regimes of turbulent shear flows exhibit a variety of remarkable scaling laws that are only now beginning to be systematically studied and understood. In the first part of this article, we summarize recent progress in understanding the friction factor of turbulent flows in rough pipes and quasi-two-dimensional soap films, showing how the data obey a two-parameter scaling law known as roughness-induced criticality, and exhibit power-law scaling of friction factor with Reynolds number that depends on the precise form of the nature of the turbulent cascade. These results hint at a non-equilibrium fluctuation-dissipation relation that applies to turbulent flows. The second part of this article concerns the lifetime statistics in smooth pipes around the transition, showing how the remarkable super-exponential scaling with Reynolds number reflects deep connections between large deviation theory, extreme value statistics, directed percolation and the onset of coexistence in predator-prey ecosystems. Both these phenomena reflect the way in which turbulence can be fruitfully approached as a problem in non-equilibrium statistical mechanics.

  8. Turbulence as a Problem in Non-equilibrium Statistical Mechanics

    NASA Astrophysics Data System (ADS)

    Goldenfeld, Nigel; Shih, Hong-Yan

    2017-05-01

    The transitional and well-developed regimes of turbulent shear flows exhibit a variety of remarkable scaling laws that are only now beginning to be systematically studied and understood. In the first part of this article, we summarize recent progress in understanding the friction factor of turbulent flows in rough pipes and quasi-two-dimensional soap films, showing how the data obey a two-parameter scaling law known as roughness-induced criticality, and exhibit power-law scaling of friction factor with Reynolds number that depends on the precise form of the nature of the turbulent cascade. These results hint at a non-equilibrium fluctuation-dissipation relation that applies to turbulent flows. The second part of this article concerns the lifetime statistics in smooth pipes around the transition, showing how the remarkable super-exponential scaling with Reynolds number reflects deep connections between large deviation theory, extreme value statistics, directed percolation and the onset of coexistence in predator-prey ecosystems. Both these phenomena reflect the way in which turbulence can be fruitfully approached as a problem in non-equilibrium statistical mechanics.

  9. Gibbsian Stationary Non-equilibrium States

    NASA Astrophysics Data System (ADS)

    De Carlo, Leonardo; Gabrielli, Davide

    2017-09-01

    We study the structure of stationary non-equilibrium states for interacting particle systems from a microscopic viewpoint. In particular we discuss two different discrete geometric constructions. We apply both of them to determine non reversible transition rates corresponding to a fixed invariant measure. The first one uses the equivalence of this problem with the construction of divergence free flows on the transition graph. Since divergence free flows are characterized by cyclic decompositions we can generate families of models from elementary cycles on the configuration space. The second construction is a functional discrete Hodge decomposition for translational covariant discrete vector fields. According to this, for example, the instantaneous current of any interacting particle system on a finite torus can be canonically decomposed in a gradient part, a circulation term and an harmonic component. All the three components are associated with functions on the configuration space. This decomposition is unique and constructive. The stationary condition can be interpreted as an orthogonality condition with respect to an harmonic discrete vector field and we use this decomposition to construct models having a fixed invariant measure.

  10. Non-Equilibrium Conductivity at Quantum Critical Points

    NASA Astrophysics Data System (ADS)

    Berridge, Andrew; Bhaseen, M. J.; Green, A. G.

    2013-03-01

    The behaviour of quantum systems driven out of equilibrium is a field in which we are still searching for general principles and universal results. Quantum critical systems are useful in this search as their out of equilibrium steady states may inherit universal features from equilibrium. While this has been shown in some cases, the calculational techniques used often involve simplified models or calculational tricks, which can obscure some of the underlying physical processes. Here we use a Boltzmann transport approach to study the steady-state non-equilibrium properties - conductivity and current noise, of the Bose-Hubbard model head-on. We must explicitly consider heat-flow and rate limiting processes in the establishment of the steady-state to show that it can indeed be universal. Our analysis reveals the importance of the hydrodynamic limit and the limitations of current approaches.

  11. Radiation temperature of non-equilibrium plasmas

    SciTech Connect

    Arunasalam, V.

    1991-07-01

    In fusion devices measurements of the radiation temperature T{sub r} ({omega}, k) near the electron cyclotron frequency {omega}{sub C} and the second harmonic 2{omega}{sub C} in directions nearly perpendicular to the confining magnetic field B (i.e., k {approx} k {perpendicular}) serve to map out the electron temperature profiles T{sub e}(r,t). For optically thick plasma at thermodynamic equilibrium T{sub r} = T{sub e}. However, there is increasing experimental evidence for the presence of non-equilibrium electron distributions (such as a drifting Maxwellian with appreciable values of the streaming parameter {omicron} = v{sub d}/v{sub t}, a bi- Maxwellian, and anisotropic Maxwellian with T {perpendicular} {ne} T {parallel}, etc.,) in tokamak plasmas, especially in the presence of radio-frequency heating. Here, we examine (both non-relativistically and relativistically) the dependence of T{sub r} on {omicron}, T{perpendicular}/T{parallel}, T{sub h}/T{sub b}, n{sub h}/n{sub b}etc., where n{sub b}, n{sub h}, T{sub b}, T{sub h} are the densities and temperatures, respectively, of the bulk and the hot components of the bi-Maxwellian plasma. Our bi-Maxwellian results predict that the ratio T{sub r}/T{sub e} is a very sensitive function of the ratios n{sub h}/n{sub b} and T{sub h}/T{sub b}. Further, these relativistic and non-relativistic results satisfy the well-known limit c {yields} {infinity} correspondence principle'', showing that the intensity of the emission and absorption line is independent of the line broadening mechanism. 44 refs., 2 figs.

  12. Non-equilibrium steady states in supramolecular polymerization

    NASA Astrophysics Data System (ADS)

    Sorrenti, Alessandro; Leira-Iglesias, Jorge; Sato, Akihiro; Hermans, Thomas M.

    2017-06-01

    Living systems use fuel-driven supramolecular polymers such as actin to control important cell functions. Fuel molecules like ATP are used to control when and where such polymers should assemble and disassemble. The cell supplies fresh ATP to the cytosol and removes waste products to sustain steady states. Artificial fuel-driven polymers have been developed recently, but keeping them in sustained non-equilibrium steady states (NESS) has proven challenging. Here we show a supramolecular polymer that can be kept in NESS, inside a membrane reactor where ATP is added and waste removed continuously. Assembly and disassembly of our polymer is regulated by phosphorylation and dephosphorylation, respectively. Waste products lead to inhibition, causing the reaction cycle to stop. Inside the membrane reactor, however, waste can be removed leading to long-lived NESS conditions. We anticipate that our approach to obtain NESS can be applied to other stimuli-responsive materials to achieve more life-like behaviour.

  13. A non-equilibrium formulation of food security resilience

    PubMed Central

    Vaitla, Bapu

    2017-01-01

    Resilience, the ability to recover from adverse events, is of fundamental importance to food security. This is especially true in poor countries, where basic needs are frequently threatened by economic, environmental and health shocks. An empirically sound formalization of the concept of food security resilience, however, is lacking. Here, we introduce a general non-equilibrium framework for quantifying resilience based on the statistical notion of persistence. Our approach can be applied to any food security variable for which high-frequency time-series data are available. We illustrate our method with per capita kilocalorie availability for 161 countries between 1961 and 2011. We find that resilient countries are not necessarily those that are characterized by high levels or less volatile fluctuations of kilocalorie intake. Accordingly, food security policies and programmes will need to be tailored not only to welfare levels at any one time, but also to long-run welfare dynamics. PMID:28280586

  14. A non-equilibrium formulation of food security resilience.

    PubMed

    Smerlak, Matteo; Vaitla, Bapu

    2017-01-01

    Resilience, the ability to recover from adverse events, is of fundamental importance to food security. This is especially true in poor countries, where basic needs are frequently threatened by economic, environmental and health shocks. An empirically sound formalization of the concept of food security resilience, however, is lacking. Here, we introduce a general non-equilibrium framework for quantifying resilience based on the statistical notion of persistence. Our approach can be applied to any food security variable for which high-frequency time-series data are available. We illustrate our method with per capita kilocalorie availability for 161 countries between 1961 and 2011. We find that resilient countries are not necessarily those that are characterized by high levels or less volatile fluctuations of kilocalorie intake. Accordingly, food security policies and programmes will need to be tailored not only to welfare levels at any one time, but also to long-run welfare dynamics.

  15. Non equilibrium electronic transport in multilayered nanostructures

    NASA Astrophysics Data System (ADS)

    Cruz-Rojas, Jesus

    Recent advances in strongly correlated materials have produced systems with novel and interesting properties like high Tc superconductors, Mott insulators and others. These novel properties have sparked an interest in industry as well as in academia as new devices are being developed. One such kind of device that can be fabricated is a heterostructure, in which layers of different compounds are stacked in a single direction. Modern deposition techniques like electron beam epitaxy, in which atomic layers of different materials are deposited one at a time creating the device, are capable of fabricating heterostructures with atomic precision. We propose a technique to study heterostructures composed of strongly correlated materials out of equilibrium. By using the Keldysh Green's function formalism in the dynamical mean field theory (DMFT) framework the properties of a multilayered device are analyzed. The system is composed of infinite dimensional 2D lattices, stacked in the z direction. The first and last planes are then connected to a bulk reservoir, and several metallic planes are used to connect the bulk reservoir to the barrier region. The barrier region is the system of interest, also known as the device. The device is composed of a number of planes where the system correlations have been turned on. The correlations are then model by using the Falicov-Kimball Hamiltonian. The device is then connected to the bulk once again from the opposite side using metallic planes creating a symmetric system. In order to study the non equilibrium properties of the device a linear vector potential A(t) = A0 + tE is turned on a long time in the past for a unit of time and then turned off. This in turn will create a current in the bulk, in effect current biasing the device, as opposed to a voltage bias in which opposite sides of the device are held to a different potential. In this document we will explain the importance of the subject, we will derive and develop the algorithm

  16. Topologically protected modes in non-equilibrium stochastic systems

    PubMed Central

    Murugan, Arvind; Vaikuntanathan, Suriyanarayanan

    2017-01-01

    Non-equilibrium driving of biophysical processes is believed to enable their robust functioning despite the presence of thermal fluctuations and other sources of disorder. Such robust functions include sensory adaptation, enhanced enzymatic specificity and maintenance of coherent oscillations. Elucidating the relation between energy consumption and organization remains an important and open question in non-equilibrium statistical mechanics. Here we report that steady states of systems with non-equilibrium fluxes can support topologically protected boundary modes that resemble similar modes in electronic and mechanical systems. Akin to their electronic and mechanical counterparts, topological-protected boundary steady states in non-equilibrium systems are robust and are largely insensitive to local perturbations. We argue that our work provides a framework for how biophysical systems can use non-equilibrium driving to achieve robust function. PMID:28071644

  17. Topologically protected modes in non-equilibrium stochastic systems

    NASA Astrophysics Data System (ADS)

    Murugan, Arvind; Vaikuntanathan, Suriyanarayanan

    2017-01-01

    Non-equilibrium driving of biophysical processes is believed to enable their robust functioning despite the presence of thermal fluctuations and other sources of disorder. Such robust functions include sensory adaptation, enhanced enzymatic specificity and maintenance of coherent oscillations. Elucidating the relation between energy consumption and organization remains an important and open question in non-equilibrium statistical mechanics. Here we report that steady states of systems with non-equilibrium fluxes can support topologically protected boundary modes that resemble similar modes in electronic and mechanical systems. Akin to their electronic and mechanical counterparts, topological-protected boundary steady states in non-equilibrium systems are robust and are largely insensitive to local perturbations. We argue that our work provides a framework for how biophysical systems can use non-equilibrium driving to achieve robust function.

  18. Topologically protected modes in non-equilibrium stochastic systems.

    PubMed

    Murugan, Arvind; Vaikuntanathan, Suriyanarayanan

    2017-01-10

    Non-equilibrium driving of biophysical processes is believed to enable their robust functioning despite the presence of thermal fluctuations and other sources of disorder. Such robust functions include sensory adaptation, enhanced enzymatic specificity and maintenance of coherent oscillations. Elucidating the relation between energy consumption and organization remains an important and open question in non-equilibrium statistical mechanics. Here we report that steady states of systems with non-equilibrium fluxes can support topologically protected boundary modes that resemble similar modes in electronic and mechanical systems. Akin to their electronic and mechanical counterparts, topological-protected boundary steady states in non-equilibrium systems are robust and are largely insensitive to local perturbations. We argue that our work provides a framework for how biophysical systems can use non-equilibrium driving to achieve robust function.

  19. Non-equilibrium Thermodynamics of Rayleigh-Taylor instability

    NASA Astrophysics Data System (ADS)

    Sengupta, Tapan K.; Sengupta, Aditi; Shruti, K. S.; Sengupta, Soumyo; Bhole, Ashish

    2016-10-01

    Rayleigh-Taylor instability (RTI) has been studied here as a non-equilibrium thermodynamics problem. Air masses with temperature difference of 70K, initially with heavier air resting on lighter air isolated by a partition, are allowed to mix by impulsively removing the partition. This results in interface instabilities, which are traced here by solving two dimensional (2D) compressible Navier-Stokes equation (NSE), without using Boussinesq approximation (BA henceforth). The non-periodic isolated system is studied by solving NSE by high accuracy, dispersion relation preserving (DRP) numerical methods described in Sengupta T.K.: High Accuracy Computing Method (Camb. Univ. Press, USA, 2013). The instability onset is due to misaligned pressure and density gradients and is evident via creation and evolution of spikes and bubbles (when lighter fluid penetrates heavier fluid and vice versa, associated with pressure waves). Assumptions inherent in compressible formulation are: (i) Stokes' hypothesis that uses zero bulk viscosity assumption and (ii) the equation of state for perfect gas which is a consequence of equilibrium thermodynamics. Present computations for a non-equilibrium thermodynamic process do not show monotonic rise of entropy with time, as one expects from equilibrium thermodynamics. This is investigated with respect to the thought-experiment. First, we replace Stokes' hypothesis, with another approach where non-zero bulk viscosity of air is taken from an experiment. Entropy of the isolated system is traced, with and without the use of Stokes' hypothesis. Without Stokes' hypothesis, one notes the rate of increase in entropy to be higher as compared to results with Stokes' hypothesis. We show this using the total entropy production for the thermodynamically isolated system. The entropy increase from the zero datum is due to mixing in general; punctuated by fluctuating entropy due to creation of compression and rarefaction fronts originating at the interface

  20. Supersonic Jet Mixing with Vibrational Non-Equilibrium

    NASA Astrophysics Data System (ADS)

    Reising, Heath H.; Kc, Utsav; Varghese, Philip L.; Clemens, Noel T.

    2013-11-01

    A new study has been initiated to study the effect of vibrational non-equilibrium on turbulent mixing and combustion. This work is relevant to high-speed, high-temperature environments, such as scramjet combustors, where shocks and mixing can lead to high degrees of vibrational non-equilibrium. In this experimental study, a new facility has been developed that consists of a perfectly-expanded axisymmetric Mach 1.5 turbulent air jet issuing into an electrically heated co-flow of air for precise control of the temperature and thus vibrationally-active population. This hot flow can be brought into non-equilibrium when the co-flow fluid is rapidly mixed with the colder supersonic jet fluid. Effects of the non-equilibrium can be isolated by replacing the nitrogen in the flow with argon. The degree of non-equilibrium in the jet shear layers is quantified by using high-spectral resolution time-averaged spontaneous Raman scattering centered on the Stokes-shifted Q branch line of N2 at 607 nm. In this first phase of the study, the effect of non-equilibrium on the mixing field will be investigated, but future work will focus on H2-air combustion. Planar Rayleigh thermometry is utilized to investigate the effects of vibrational non-equilibrium on the turbulent structures and thermal dissipation field. This work was funded by the Air Force Office of Scientific Research under BRI grant FA9550-12-0460.

  1. Emission properties of non-equilibrium krypton plasma in the water-window region

    NASA Astrophysics Data System (ADS)

    Zakharov, Vassily S.

    2017-01-01

    The line emission properties of non-equilibrium krypton plasma are examined and the optimal emission temperature conditions for soft x-ray emission output in the water-window region are explored. The kinetic parameters for non-equilibrium plasma including major inelastic ion interaction processes, radiation and emission data are obtained with an approach based on the Hartree-Fock-Slater (HFS) quantum-statistical model and a distorted wave approximation. A nonmaxwellian electron distribution is used as well for calculating collisional rates. At a temperature of 70 eV the emission spectral efficiency for Kr equilibrium plasma is about 10%, and it jumps to a value greater than 70% at 100 eV. A similar spectral efficiency is achieved at a lower temperature e.g. 80 eV in non-equilibrium plasma with 7.5 keV fast electron average energy.

  2. Non-Equilibrium Thermodynamic Chemistry and the Composition of the Atmosphere of Mars

    NASA Technical Reports Server (NTRS)

    Levine, J. S.; Summers, M. E.

    2003-01-01

    A high priority objective of the Mars Exploration Program is to Determine if life exists today (MEPAG Goal I, Objective A). The measurement of gases of biogenic origin may be an approach to detect the presence of microbial life on the surface or subsurface of Mars. Chemical thermodynamic calculations indicate that on both Earth and Mars, certain gases should exist in extremely low concentrations, if at all. Microbial metabolic activity is an important non-equilibrium chemistry process on Earth, and if microbial life exists on Mars, may be an important nonequilibrium chemistry process on Mars. The non-equilibrium chemistry of the atmosphere of Mars is discussed in this paper.

  3. Non-Equilibrium Thermodynamic Chemistry and the Composition of the Atmosphere of Mars

    NASA Technical Reports Server (NTRS)

    Levine, J. S.; Summers, M. E.

    2003-01-01

    A high priority objective of the Mars Exploration Program is to Determine if life exists today (MEPAG Goal I, Objective A). The measurement of gases of biogenic origin may be an approach to detect the presence of microbial life on the surface or subsurface of Mars. Chemical thermodynamic calculations indicate that on both Earth and Mars, certain gases should exist in extremely low concentrations, if at all. Microbial metabolic activity is an important non-equilibrium chemistry process on Earth, and if microbial life exists on Mars, may be an important nonequilibrium chemistry process on Mars. The non-equilibrium chemistry of the atmosphere of Mars is discussed in this paper.

  4. Complex effective Hamiltonian approach for ir multiphoton dissociation

    NASA Astrophysics Data System (ADS)

    Flosnik, Thomas M.; Wyatt, Robert E.

    1989-11-01

    A complex effective Hamiltonian (CEH) approach is formulated in the semiclassical (quantum-molecule-classical-field) representation for the study of ir multiphoton-dissociation processes. This formulation enables one to evaluate the dissociation dynamics in terms of the discrete states only. The effects of the bound-continuum-state interactions are manifested in the CEH matrix by the addition of level shifts and imaginary decay widths to the unperturbed bound-state energies and bound-bound dipole-coupling elements. The periodicity of the CEH matrix in time is preserved, allowing the use of Floquet theory to exactly evaluate the time development of the system. This CEH formulation requires that transitions between continuum states can be safely ignored, that the bound-continuum dipole couplings vary slowly with the continuum state energy ɛ, and that time t is sufficiently long. High field intensities also tend to make these requirements more stringent. It is found that the CEH matrix in the semiclassical representation can be asymmetric with respect to the level shifts and decay widths. For the ir multiphoton dissociation of a nonrotating model diatomic molecule in the ground electronic state, a rather truncated form of the CEH is tested against a discretized continuum plus optical potential method. Despite the high field intensity and relatively short laser pulse used in these tests, the results indicate that this CEH method works well provided the bound-continuum dipole-coupling elements vary slowly with ɛ. As can be expected, the validity of the CEH is limited when the bound-continuum dipole couplings vary strongly with ɛ, which is the case with our model diatomic molecule. The nature of the bound-continuum interactions can apparently have considerable effect on the dissociation dynamics.

  5. Electrolytes: transport properties and non-equilibrium thermodynamics

    SciTech Connect

    Miller, D.G.

    1980-12-01

    This paper presents a review on the application of non-equilibrium thermodynamics to transport in electrolyte solutions, and some recent experimental work and results for mutual diffusion in electrolyte solutions.

  6. Achieving Radiation Tolerance through Non-Equilibrium Grain Boundary Structures.

    PubMed

    Vetterick, Gregory A; Gruber, Jacob; Suri, Pranav K; Baldwin, Jon K; Kirk, Marquis A; Baldo, Pete; Wang, Yong Q; Misra, Amit; Tucker, Garritt J; Taheri, Mitra L

    2017-09-25

    Many methods used to produce nanocrystalline (NC) materials leave behind non-equilibrium grain boundaries (GBs) containing excess free volume and higher energy than their equilibrium counterparts with identical 5 degrees of freedom. Since non-equilibrium GBs have increased amounts of both strain and free volume, these boundaries may act as more efficient sinks for the excess interstitials and vacancies produced in a material under irradiation as compared to equilibrium GBs. The relative sink strengths of equilibrium and non-equilibrium GBs were explored by comparing the behavior of annealed (equilibrium) and as-deposited (non-equilibrium) NC iron films on irradiation. These results were coupled with atomistic simulations to better reveal the underlying processes occurring on timescales too short to capture using in situ TEM. After irradiation, NC iron with non-equilibrium GBs contains both a smaller number density of defect clusters and a smaller average defect cluster size. Simulations showed that excess free volume contribute to a decreased survival rate of point defects in cascades occurring adjacent to the GB and that these boundaries undergo less dramatic changes in structure upon irradiation. These results suggest that non-equilibrium GBs act as more efficient sinks for defects and could be utilized to create more radiation tolerant materials in future.

  7. Nonlinear optics in non-equilibrium microplasmas

    NASA Astrophysics Data System (ADS)

    Compton, Ryan E.

    2011-12-01

    This dissertation details the nature of subnanosecond laser-induced microplasma dynamics, particularly concerning the evolution of the electron temperature and concentration. Central to this development is the advent of a femtosecond four-wave mixing (FWM) spectroscopic method. FWM (in the form of coherent anti-Stokes Raman scattering (CARS)) measurements are performed on the fundamental oxygen vibrational transition. An analytical expression is provided that accounts for the resonant and nonresonant contributions to the CARS signal generated from the interaction of broadband pump and Stokes pulses. The inherent phase mismatch is also accounted for, resulting in quantitative agreement between experiment and theory. FWM is then used to measure the early-time electron dynamics in the noble gas series from He to Xe following irradiation by an intense (1014 Wcm-2) nonresonant 80 fs laser pulse. An electron impact ionization cooling model is presented to determine the evolution of electron kinetic energies following ionization. Kinetic energies are predicted to evolve from > 20 eV to < 1 eV in the first 1.5 ns. The initial degree of ionization is determined experimentally via measurement of the Bremsstrahlung background emission, and modeled with a modified ADK theory based on tunnel ionization. Combined, these two descriptions account for the evolution of both the electron temperature and concentration and provide quantitative agreement with the FWM measurements. The model is further tested with measurements of the gas pressure and pump laser intensity on the electron dynamics. The FWM experiments are concluded with a qualitative discussion of dissociative recombination dynamics occurring in molecular microplasmas. The microplasma environment is used as a source for the generation of two-level systems in the excited state manifold of atomic oxygen and argon. These two-level systems are coupled using moderately intense ˜1 ps near-infrared (and near-resonant) pulses

  8. Non-equilibrium Plasma-Assisted Combustion

    NASA Astrophysics Data System (ADS)

    Sun, Wenting

    As a promising method to enhance combustion, plasma-assisted combustion has drawn considerable attention. Due to the fast electron impact excitation and dissociation of molecules at low temperatures, plasma introduces new reaction pathways, changes fuel oxidation timescales, and can dramatically modify the combustion processes. In this dissertation, the radical generation from the plasma and its effect on flame extinction and ignition were investigated experimentally together with detailed numerical simulation on a counterflow CH4 diffusion flame. It was found that the atomic oxygen production played a dominant role in enhancing the chain-branching reaction pathways and accelerating fuel oxidation at near limit flame conditions. To understand the direct coupling effect between plasma and flame, a novel plasma-assisted combustion system with in situ discharge in a counterflow diffusion flame was developed. The ignition and extinction characteristics of CH4/O 2/He diffusion flames were investigated. For the first time, it was demonstrated that the strong plasma-flame coupling in in situ discharge could significantly modify the ignition/extinction characteristics and create a new fully stretched ignition S-curve. To understand low temperature kinetics of combustion, it is critical to measure the formation and decomposition of H2O2. A molecular beam mass spectrometry (MBMS) system was developed and integrated with a laminar flow reactor. H2O2 measurements were directly calibrated, and compared to kinetic models. The results confirmed that low and intermediate temperature DME oxidation produced significant amounts of H2O2. The experimental characterizations of important intermediate species including H2O2, CH2O and CH3OCHO provided new capabilities to investigate and improve the chemical kinetics especially at low temperatures. A numerical scheme for model reduction was developed to improve the computational efficiency in the simulation of combustion with detailed

  9. Non-equilibrium microrheology of living cells

    NASA Astrophysics Data System (ADS)

    Wei, Ming-Tzo; Ou-Yang, H. Daniel

    2011-03-01

    Intracellular stresses generated by molecular motors can actively modify cytoskeletal network and change intracellular mechanical properties. We study the out-of-equilibrium microrheology in living cells using endogenous organelle particles as probes. This paper reports measurements of the intracellular mechanical properties using passive, particle-tracking and active, optical tweezers-based microrheology approaches. Using arguments based on the fluctuation-dissipation theorem, we compared the results from both approaches to distinguish thermal and non-thermal mechanical fluctuations in living cells.

  10. A numerical study of non-equilibrium flows with different vibrational relaxation models

    NASA Astrophysics Data System (ADS)

    Petrov, N. V.; Kirilovskiy, S. V.; Poplavskaya, T. V.; Shoev, G. V.

    2016-07-01

    Comparative analysis of a widely used Landau-Teller formula for small deviations from thermal equilibrium and its generalized form, derived from the kinetic theory of gaseous, for an arbitrary deviation from the thermal equilibrium is performed by numerical simulation. Thermally non-equilibrium flows of carbon dioxide near a sharp-edged plate, pure nitrogen flows between two symmetrically located wedges, and the N2/N mixture flow with vibrational relaxation and dissociation over a cone have been considered. A comparison has been performed with the available experimental data.

  11. Non-Equilibrium Properties from Equilibrium Free Energy Calculations

    NASA Technical Reports Server (NTRS)

    Pohorille, Andrew; Wilson, Michael A.

    2012-01-01

    Calculating free energy in computer simulations is of central importance in statistical mechanics of condensed media and its applications to chemistry and biology not only because it is the most comprehensive and informative quantity that characterizes the eqUilibrium state, but also because it often provides an efficient route to access dynamic and kinetic properties of a system. Most of applications of equilibrium free energy calculations to non-equilibrium processes rely on a description in which a molecule or an ion diffuses in the potential of mean force. In general case this description is a simplification, but it might be satisfactorily accurate in many instances of practical interest. This hypothesis has been tested in the example of the electrodiffusion equation . Conductance of model ion channels has been calculated directly through counting the number of ion crossing events observed during long molecular dynamics simulations and has been compared with the conductance obtained from solving the generalized Nernst-Plank equation. It has been shown that under relatively modest conditions the agreement between these two approaches is excellent, thus demonstrating the assumptions underlying the diffusion equation are fulfilled. Under these conditions the electrodiffusion equation provides an efficient approach to calculating the full voltage-current dependence routinely measured in electrophysiological experiments.

  12. Reaction and internal energy relaxation rates in viscous thermochemically non-equilibrium gas flows

    SciTech Connect

    Kustova, E. V.; Oblapenko, G. P.

    2015-01-15

    In the present paper, reaction and energy relaxation rates as well as the normal stress are studied for viscous gas flows with vibrational and chemical non-equilibrium. Using the modified Chapman-Enskog method, multi-temperature models based on the Treanor and Boltzmann vibrational distributions are developed for the general case taking into account all kinds of vibrational energy transitions, exchange reactions, dissociation, and recombination. Integral equations specifying the first-order corrections to the normal mean stress and reaction rates are derived, as well as approximate systems of linear equations for their numerical computation. Generalized thermodynamic driving forces associated with all non-equilibrium processes are introduced. It is shown that normal stresses and rates of non-equilibrium processes can be expressed in terms of the same driving forces; the symmetry of kinetic coefficients in these expressions is proven. The developed general model is applied to a particular case of a pure N{sub 2} viscous flow with slow VT relaxation. Normal stress and rates of vibrational relaxation are studied for various ratios of vibrational and translational temperatures. The cross effects between different vibrational transitions in viscous flows are evaluated, along with the influence of anharmonicity and flow compressibility on the first-order corrections to the relaxation rate. Limits of validity for the widely used Landau–Teller model of vibrational relaxation are indicated.

  13. Considerations on non equilibrium thermodynamics of interactions

    NASA Astrophysics Data System (ADS)

    Lucia, Umberto

    2016-04-01

    Nature can be considered the "first" engineer! For scientists and engineers, dynamics and evolution of complex systems are not easy to predict. A fundamental approach to study complex system is thermodynamics. But, the result is the origin of too many schools of thermodynamics with a consequent difficulty in communication between thermodynamicists and other scientists and, also, among themselves. The solution is to obtain a unified approach based on the fundamentals of physics. Here we suggest a possible unification of the schools of thermodynamics starting from two fundamental concepts of physics, interaction and flows.

  14. Non-equilibrium statistical mechanics of geophysical flows

    NASA Astrophysics Data System (ADS)

    Bouchet, F.; Simonnet, E.

    2010-12-01

    We describe the dynamics of two-dimensional and quasi-geostrophic flows with stochastic forces. It exhibits extremely long correlations times, related to multi-scale dynamics, and collective behaviors such as bistability and multistability. We show that in regimes of weak forces and dissipation, dominated by the large scales inertial dynamics, equilibrium statistical mechanics provides extremely precise predictions for the self-organized large scale flows. This is true for amuch larger range of parameters than would have been expected, explaining a renewed interest for statistical mechanics approaches. Non-equilibrium theory, based on kinetic theories (or equivalently Mori-Zwanzig projections) gives explicit predictions for algebraic correlations of the velocity field, and for the large scale mean flow. We also describe briefly recent applications to ocean jets and vortices, explaining the detailed structure of inertial mid-basin jets and both the structure, and westward and poleward drifts of oceans rings and eddies. References: F. BOUCHET and E. SIMONNET, Random Changes of Flow Topology in Two-Dimensional and Geophysical Turbulence, Physical Review Letters 102 (2009), no. 9, 094504-+. F. BOUCHET and J. SOMMERIA, Emergence of intense jets and Jupiter's Great Red Spot as maximum-entropy structures, Journal of Fluid Mechanics 464 (2002), 165-207. A. VENAILLE and F. BOUCHET, Ocean rings and jets as statistical equilibrium states, submitted to JPO F. BOUCHET and A. VENAILLE, Statistical mechanics of two-dimensional and geophysical flows, submitted to Physics Reports Non-equilibrium phase transitions in the dynamics of the 2D Navier-Stokes equations with stochastic forces in a doubly periodic domain of aspect ratio d. The two main plots are the time series and probability density functions (PDFs) of the modulus of the largest scale Fourrier component, illustrating random changes between dipoles (|z1| close to 0.55) and unidirectional flows (|z1| close to 0.). The small

  15. New phenomena in non-equilibrium quantum physics

    NASA Astrophysics Data System (ADS)

    Kitagawa, Takuya

    From its beginning in the early 20th century, quantum theory has become progressively more important especially due to its contributions to the development of technologies. Quantum mechanics is crucial for current technology such as semiconductors, and also holds promise for future technologies such as superconductors and quantum computing. Despite of the success of quantum theory, its applications have been mostly limited to equilibrium or static systems due to 1. lack of experimental controllability of non-equilibrium quantum systems 2. lack of theoretical frameworks to understand non-equilibrium dynamics. Consequently, physicists have not yet discovered too many interesting phenomena in non-equilibrium quantum systems from both theoretical and experimental point of view and thus, non-equilibrium quantum physics did not attract too much attentions. The situation has recently changed due to the rapid development of experimental techniques in condensed matter as well as cold atom systems, which now enables a better control of non-equilibrium quantum systems. Motivated by this experimental progress, we constructed theoretical frameworks to study three different non-equilibrium regimes of transient dynamics, steady states and periodically drives. These frameworks provide new perspectives for dynamical quantum process, and help to discover new phenomena in these systems. In this thesis, we describe these frameworks through explicit examples and demonstrate their versatility. Some of these theoretical proposals have been realized in experiments, confirming the applicability of the theories to realistic experimental situations. These studies have led to not only the improved fundamental understanding of non-equilibrium processes in quantum systems, but also suggested entirely different venues for developing quantum technologies.

  16. Non-equilibrium processes in interstellar molecules

    NASA Technical Reports Server (NTRS)

    Strelnitskiy, V. S.

    1979-01-01

    The types of nonequilibrium emission and absorption by interstellar molecules are summarized. The observed brightness emission temperatures of compact OH and H2O sources are discussed using the concept of maser amplification. A single thermodynamic approach was used in which masers and anti-masers are considered as heat engines for the theoretical interpretation of the cosmic maser and anti-maser phenomena. The requirements for different models of pumping are formulated and a classification is suggested for the mechanisms of pumping, according to the source and discharge of energy.

  17. Non-Equilibrium Effects on Hypersonic Turbulent Boundary Layers

    NASA Astrophysics Data System (ADS)

    Kim, Pilbum

    Understanding non-equilibrium effects of hypersonic turbulent boundary layers is essential in order to build cost efficient and reliable hypersonic vehicles. It is well known that non-equilibrium effects on the boundary layers are notable, but our understanding of the effects are limited. The overall goal of this study is to improve the understanding of non-equilibrium effects on hypersonic turbulent boundary layers. A new code has been developed for direct numerical simulations of spatially developing hypersonic turbulent boundary layers over a flat plate with finite-rate reactions. A fifth-order hybrid weighted essentially non-oscillatory scheme with a low dissipation finite-difference scheme is utilized in order to capture stiff gradients while resolving small motions in turbulent boundary layers. The code has been validated by qualitative and quantitative comparisons of two different simulations of a non-equilibrium flow and a spatially developing turbulent boundary layer. With the validated code, direct numerical simulations of four different hypersonic turbulent boundary layers, perfect gas and non-equilibrium flows of pure oxygen and nitrogen, have been performed. In order to rule out uncertainties in comparisons, the same inlet conditions are imposed for each species, and then mean and turbulence statistics as well as near-wall turbulence structures are compared at a downstream location. Based on those comparisons, it is shown that there is no direct energy exchanges between internal and turbulent kinetic energies due to thermal and chemical non-equilibrium processes in the flow field. Instead, these non-equilibria affect turbulent boundary layers by changing the temperature without changing the main characteristics of near-wall turbulence structures. This change in the temperature induces the changes in the density and viscosity and the mean flow fields are then adjusted to satisfy the conservation laws. The perturbation fields are modified according to

  18. Non-equilibrium condensation process in holographic superconductor with nonlinear electrodynamics

    NASA Astrophysics Data System (ADS)

    Liu, Yunqi; Gong, Yungui; Wang, Bin

    2016-02-01

    We study the non-equilibrium condensation process in a holographic superconductor with nonlinear corrections to the U (1) gauge field. We start with an asymptotic Anti-de-Sitter (AdS) black hole against a complex scalar perturbation at the initial time, and solve the dynamics of the gravitational systems in the bulk. When the black hole temperature T is smaller than a critical value T c , the scalar perturbation grows exponentially till saturation, the final state of spacetime approaches to a hairy black hole. In the bulk theory, we find the clue of the influence of nonlinear corrections in the gauge filed on the process of the scalar field condensation. We show that the bulk dynamics in the non-equilibrium process is completely consistent with the observations on the boundary order parameter. Furthermore we examine the time evolution of horizons in the bulk non-equilibrium transformation process from the bald AdS black hole to the AdS hairy hole. Both the evolution of apparent and event horizons show that the original AdS black hole configuration requires more time to finish the transformation to become a hairy black hole if there is nonlinear correction to the electromagnetic field. We generalize our non-equilibrium discussions to the holographic entanglement entropy and find that the holographic entanglement entropy can give us further understanding of the influence of the nonlinearity in the gauge field on the scalar condensation.

  19. Information-theoretic tools for parametrized coarse-graining of non-equilibrium extended systems

    NASA Astrophysics Data System (ADS)

    Katsoulakis, Markos A.; Plecháč, Petr

    2013-08-01

    In this paper, we focus on the development of new methods suitable for efficient and reliable coarse-graining of non-equilibrium molecular systems. In this context, we propose error estimation and controlled-fidelity model reduction methods based on Path-Space Information Theory, combined with statistical parametric estimation of rates for non-equilibrium stationary processes. The approach we propose extends the applicability of existing information-based methods for deriving parametrized coarse-grained models to Non-Equilibrium systems with Stationary States. In the context of coarse-graining it allows for constructing optimal parametrized Markovian coarse-grained dynamics within a parametric family, by minimizing information loss (due to coarse-graining) on the path space. Furthermore, we propose an asymptotically equivalent method—related to maximum likelihood estimators for stochastic processes—where the coarse-graining is obtained by optimizing the information content in path space of the coarse variables, with respect to the projected computational data from a fine-scale simulation. Finally, the associated path-space Fisher Information Matrix can provide confidence intervals for the corresponding parameter estimators. We demonstrate the proposed coarse-graining method in (a) non-equilibrium systems with diffusing interacting particles, driven by out-of-equilibrium boundary conditions, as well as (b) multi-scale diffusions and the corresponding stochastic averaging limits, comparing them to our proposed methodologies.

  20. Modelling non-equilibrium thermodynamic systems from the speed-gradient principle

    NASA Astrophysics Data System (ADS)

    Khantuleva, Tatiana A.; Shalymov, Dmitry S.

    2017-03-01

    The application of the speed-gradient (SG) principle to the non-equilibrium distribution systems far away from thermodynamic equilibrium is investigated. The options for applying the SG principle to describe the non-equilibrium transport processes in real-world environments are discussed. Investigation of a non-equilibrium system's evolution at different scale levels via the SG principle allows for a fresh look at the thermodynamics problems associated with the behaviour of the system entropy. Generalized dynamic equations for finite and infinite number of constraints are proposed. It is shown that the stationary solution to the equations, resulting from the SG principle, entirely coincides with the locally equilibrium distribution function obtained by Zubarev. A new approach to describe time evolution of systems far from equilibrium is proposed based on application of the SG principle at the intermediate scale level of the system's internal structure. The problem of the high-rate shear flow of viscous fluid near the rigid plane plate is discussed. It is shown that the SG principle allows closed mathematical models of non-equilibrium processes to be constructed. This article is part of the themed issue 'Horizons of cybernetical physics'.

  1. Modelling non-equilibrium thermodynamic systems from the speed-gradient principle.

    PubMed

    Khantuleva, Tatiana A; Shalymov, Dmitry S

    2017-03-06

    The application of the speed-gradient (SG) principle to the non-equilibrium distribution systems far away from thermodynamic equilibrium is investigated. The options for applying the SG principle to describe the non-equilibrium transport processes in real-world environments are discussed. Investigation of a non-equilibrium system's evolution at different scale levels via the SG principle allows for a fresh look at the thermodynamics problems associated with the behaviour of the system entropy. Generalized dynamic equations for finite and infinite number of constraints are proposed. It is shown that the stationary solution to the equations, resulting from the SG principle, entirely coincides with the locally equilibrium distribution function obtained by Zubarev. A new approach to describe time evolution of systems far from equilibrium is proposed based on application of the SG principle at the intermediate scale level of the system's internal structure. The problem of the high-rate shear flow of viscous fluid near the rigid plane plate is discussed. It is shown that the SG principle allows closed mathematical models of non-equilibrium processes to be constructed.This article is part of the themed issue 'Horizons of cybernetical physics'.

  2. Detection of Non-Equilibrium Fluctuations in Active Gels

    NASA Astrophysics Data System (ADS)

    Bacanu, Alexandru; Broedersz, Chase; Gladrow, Jannes; Mackintosh, Fred; Schmidt, Christoph; Fakhri, Nikta

    Active force generation at the molecular scale in cells can result in stochastic non-equilibrium dynamics on mesoscpopic scales. Molecular motors such as myosin can drive steady-state stress fluctuations in cytoskeletal networks. Here, we present a non-invasive technique to probe non-equilibrium fluctuations in an active gel using single-walled carbon nanotubes (SWNTs). SWNTs are semiflexible polymers with intrinsic fluorescence in the near infrared. Both thermal and active motor-induced forces in the network induce transverse fluctuations of SWNTs. We demonstrate that active driven shape fluctuations of the SWNTs exhibit dynamics that reflect the non-equilibrium activity, in particular the emergence of correlations between the bending modes. We discuss the observation of breaking of detailed balance in this configurational space of the SWNT probes. Supported by National Defense Science and Engineering Graduate Student Fellowship (NDSEG).

  3. Free energy for non-equilibrium quasi-stationary states

    NASA Astrophysics Data System (ADS)

    Allahverdyan, A. E.; Martirosyan, N. H.

    2017-03-01

    We study a class of non-equilibrium quasi-stationary states for a Markov system interacting with two different thermal baths. We show that the work done under a slow, external change of parameters admits a potential, i.e., the free energy. Three conditions are needed for the existence of free energy in this non-equilibrium system: time-scale separation between variables of the system, partial controllability (external fields couple only with the slow variable), and an effective detailed balance. These conditions are facilitated in the continuous limit for the slow variable. In contrast to its equilibrium counterpart, the non-equilibrium free energy can increase with temperature. One example of this is that entropy reduction by means of external fields (cooling) can be easier (in the sense of the work cost) if it starts from a higher temperature.

  4. Landscape and flux theory of non-equilibrium open economy

    NASA Astrophysics Data System (ADS)

    Zhang, Kun; Wang, Jin

    2017-09-01

    The economy is open and never in true equilibrium due to the exchanges with outside. However, most of the quantitative studies have been focused on the equilibrium economy. Despite of the recent efforts, it is still challenging to formulate a quantitative theory for uncovering the principles of non-equilibrium open economy. In this study, we developed a landscape and flux theory for non-equilibrium economy. We quantified the states of economy and identify the multi-stable states as the basins of attractions on the underlying landscape. We found the global driving force of the non-equilibrium economy is determined by both the underlying landscape gradient and the curl probability flux measuring the degree of non-equilibriumness through the detailed balance breaking. The non-equilibrium thermodynamics, the global stability, the optimal path and speed of the non-equilibrium economy can be formulated and quantified. In the conventional economy, the supply and demand usually has only one equilibrium. By considering nonlinear supply-demand dynamics, we found that both bi-stable states and limit cycle oscillations can emerge. By shifting the slope of demand curve, we can see how the bi-stability transforms to the limit cycle dynamics and vice versa. By parallel shifting the demand curve, we can also see how the monopoly, the competition, and the bistable monopoly and competition states emerge and transform to one other. We can also see how the mono-stable monopoly, the limit cycle and the mono-stable competition states emerge and transform to one another.

  5. The influence of non-equilibrium pressure on rotating flows

    NASA Astrophysics Data System (ADS)

    Zardadkhan, Irfan Rashid

    This study was undertaken to investigate the influence of pressure relaxation on steady, incompressible flows with strong streamline curvature. In the early part of this dissertation research, the significance of non-equilibrium pressure forces in controlling the structure of a steady, two dimensional axial vortex was demonstrated. In order to extend the study of pressure relaxation influences on more complex rotating flows, this dissertation has examined other rotating flow features that can be associated with hurricanes, tornadoes and dust devils. To model these flows, modified boundary layer equations were developed for a fluid column rotating near a solid plane including the influence of non-equilibrium pressure forces. The far-field boundary conditions were inferred using the asymptotic behavior of the governing equations, and the boundary conditions for the axial and radial components of velocity were shown to be dependent on the pressure relaxation coefficient, η p, and the characteristic angular velocity of the rotating fluid column, ω. This research has shown for the first time that the inclusion of non-equilibrium pressure results in a free-standing stagnation plane at the top of a funnel shaped rotating fluid column, which is consistent with observational data for hurricanes, tornadoes and dust devils. It has also been shown that in the absence of non-equilibrium pressure, the stagnation plane for rotating flows cannot be observed. The velocity and pressure distributions resulting from incorporating non-equilibrium pressure effects were then compared with available observational data for tornadoes and dust devils. The general profiles of the velocity and pressure distributions were found to be in good agreement with physical measurements, which was not possible without introducing empirical turbulence effects, in the absence of non-equilibrium pressure effects.

  6. Bright solitons in non-equilibrium coherent quantum matter

    PubMed Central

    Pinsker, F.; Flayac, H.

    2016-01-01

    We theoretically demonstrate a mechanism for bright soliton generation in spinor non-equilibrium Bose–Einstein condensates made of atoms or quasi-particles such as polaritons in semiconductor microcavities. We give analytical expressions for bright (half) solitons as minimizing functions of a generalized non-conservative Lagrangian elucidating the unique features of inter and intra-competition in non-equilibrium systems. The analytical results are supported by a detailed numerical analysis that further shows the rich soliton dynamics inferred by their instability and mutual cross-interactions. PMID:26997892

  7. Non-equilibrium critical behavior of thin Ising films

    NASA Astrophysics Data System (ADS)

    Medvedeva, Maria A.; Prudnikov, Pavel V.; Elin, Alexey S.

    2017-10-01

    In this paper we study the non-equilibrium properties of Ising ferromagnetic films using Monte Carlo simulations by short-time dynamic method. We have found thickness dependency of critical exponents z, θ ‧ and β / ν . Ageing effects were observed in non-equilibrium critical behavior. Former was carried out both from high-temperature and low-temperature initial states. A characteristic time of relaxation, which diverges at a transition temperature in the thermodynamic limit, is obtained as a function of the system size and waiting time.

  8. DSMC predictions of non-equilibrium reaction rates.

    SciTech Connect

    Gallis, Michail A.; Bond, Ryan Bomar; Torczynski, John Robert

    2010-04-01

    A set of Direct Simulation Monte Carlo (DSMC) chemical-reaction models recently proposed by Bird and based solely on the collision energy and the vibrational energy levels of the species involved is applied to calculate nonequilibrium chemical-reaction rates for atmospheric reactions in hypersonic flows. The DSMC non-equilibrium model predictions are in good agreement with theoretical models and experimental measurements. The observed agreement provides strong evidence that modeling chemical reactions using only the collision energy and the vibrational energy levels provides an accurate method for predicting non-equilibrium chemical-reaction rates.

  9. Potential and flux field landscape theory. I. Global stability and dynamics of spatially dependent non-equilibrium systems.

    PubMed

    Wu, Wei; Wang, Jin

    2013-09-28

    found to be a Lyapunov functional of the deterministic spatially dependent system. Therefore, the intrinsic potential landscape can characterize the global stability of the deterministic system. The relative entropy functional of the stochastic spatially dependent non-equilibrium system is found to be the Lyapunov functional of the stochastic dynamics of the system. Therefore, the relative entropy functional quantifies the global stability of the stochastic system with finite fluctuations. Our theory offers an alternative general approach to other field-theoretic techniques, to study the global stability and dynamics of spatially dependent non-equilibrium field systems. It can be applied to many physical, chemical, and biological spatially dependent non-equilibrium systems.

  10. Spacecraft Sterilization Using Non-Equilibrium Atmospheric Pressure Plasma

    NASA Technical Reports Server (NTRS)

    Cooper, Moogega; Vaze, Nachiket; Anderson, Shawn; Fridman, Gregory; Vasilets, Victor N.; Gutsol, Alexander; Tsapin, Alexander; Fridman, Alexander

    2007-01-01

    As a solution to chemically and thermally destructive sterilization methods currently used for spacecraft, non-equilibrium atmospheric pressure plasmas are used to treat surfaces inoculated with Bacillus subtilis and Deinococcus radiodurans. Evidence of significant morphological changes and reduction in viability due to plasma exposure will be presented, including a 4-log reduction of B. subtilis after 2 minutes of dielectric barrier discharge treatment.

  11. Spacecraft Sterilization Using Non-Equilibrium Atmospheric Pressure Plasma

    NASA Technical Reports Server (NTRS)

    Cooper, Moogega; Vaze, Nachiket; Anderson, Shawn; Fridman, Gregory; Vasilets, Victor N.; Gutsol, Alexander; Tsapin, Alexander; Fridman, Alexander

    2007-01-01

    As a solution to chemically and thermally destructive sterilization methods currently used for spacecraft, non-equilibrium atmospheric pressure plasmas are used to treat surfaces inoculated with Bacillus subtilis and Deinococcus radiodurans. Evidence of significant morphological changes and reduction in viability due to plasma exposure will be presented, including a 4-log reduction of B. subtilis after 2 minutes of dielectric barrier discharge treatment.

  12. Caloric and entropic temperatures in non-equilibrium steady states

    NASA Astrophysics Data System (ADS)

    Jou, D.; Restuccia, L.

    2016-10-01

    We examine the non-equilibrium consequences of two different definitions of temperature in systems out of equilibrium: one is based on the internal energy (caloric temperature), and the other one on the entropy (entropic temperature). We discuss the relation between the values obtained from these two definitions in ideal gases and in two-level systems.

  13. Strongly Non-equilibrium Dynamics of Nanochannel Confined DNA

    NASA Astrophysics Data System (ADS)

    Reisner, Walter

    Nanoconfined DNA exhibits a wide-range of fascinating transient and steady-state non-equilibrium phenomena. Yet, while experiment, simulation and scaling analytics are converging on a comprehensive picture regarding the equilibrium behavior of nanochannel confined DNA, non-equilibrium behavior remains largely unexplored. In particular, while the DNA extension along the nanochannel is the key observable in equilibrium experiments, in the non-equilibrium case it is necessary to measure and model not just the extension but the molecule's full time-dependent one-dimensional concentration profile. Here, we apply controlled compressive forces to a nanochannel confined molecule via a nanodozer assay, whereby an optically trapped bead is slid down the channel at a constant speed. Upon contact with the molecule, a propagating concentration ``shockwave'' develops near the bead and the molecule is dynamically compressed. This experiment, a single-molecule implementation of a macroscopic cylinder-piston apparatus, can be used to observe the molecule response over a range of forcings and benchmark theoretical description of non-equilibrium behavior. We show that the dynamic concentration profiles, including both transient and steady-state response, can be modelled via a partial differential evolution equation combining nonlinear diffusion and convection. Lastly, we present preliminary results for dynamic compression of multiple confined molecules to explore regimes of segregation and mixing for multiple chains in confinement.

  14. On Non-Equilibrium Thermodynamics of Space-Time and Quantum Gravity

    NASA Astrophysics Data System (ADS)

    Munkhammar, Joakim

    Based on recent results from general relativistic statistical mechanics and black hole information transfer limits, a space-time entropy-action equivalence is proposed as a generalization of the holographic principle. With this conjecture, the action principle can be replaced by the second law of thermodynamics, and for the Einstein-Hilbert action the Einstein field equations are conceptually the result of thermodynamic equilibrium. For non-equilibrium situations, Jaynes' information-theoretic approach to maximum entropy production is adopted instead of the second law of thermodynamics. As it turns out for appropriate choices of constants, quantum gravity is obtained. For the special case of a free particle the Bekenstein-Verlinde entropy-to-displacement relation of holographic gravity and thus the traditional holographic principle emerges. Although Jacobson's original thermodynamic equilibrium approach proposed that gravity might not necessarily be quantized, this particular non-equilibrium treatment might require it.

  15. Quantitative analysis of non-equilibrium phase transition process by the catastrophe theory

    NASA Astrophysics Data System (ADS)

    Liang, Xiao; Wu, Jiu Hui; Zhong, H. B.

    2017-08-01

    Catastrophe theory is a highly generalized mathematical theory that summarizes the rules of non-equilibrium phase transition by several catastrophe models. This paper investigates the general non-equilibrium phase transition process quantitatively using catastrophe theory for the first time, to our knowledge. First, a new approach is proposed by combining the catastrophe theory with dimensionless analysis. Second, the new approach is applied to two classic examples: one is the turbulent phase transition and the other is the bottleneck effect of particle flow. For the turbulence phase transition process, the quantitative relationships are obtained. Comparing with Kolmogorov's turbulent theory, the new method proposed in this paper is able to evaluate not only the complete turbulence condition but also the development of turbulence, and Kolmogorov's turbulent theory is only a special case of our results by this new approach. For the particle flow bottleneck effect, the results obtained by this new method correspond with the empirical formulated results. Therefore, the proposed method can solve non-equilibrium phase transition process problems and has the potential to extend to fluid, aerodynamics, and so forth.

  16. Investigation of Non-Equilibrium Radiation for Earth Entry

    NASA Technical Reports Server (NTRS)

    Brandis, Aaron; Johnston, Chris; Cruden, Brett

    2016-01-01

    This paper presents measurements and simulations of non-equilibrium shock layer radiation relevant to high-speed Earth entry data obtained in the NASA Ames Research Center's Electric Arc Shock Tube (EAST) facility. The experiments were aimed at measuring the spatially and spectrally resolved radiance at relevant entry conditions for both an approximate Earth atmosphere (79 N2 : 21 O2) as well as a more accurate composition featuring the trace species Ar and CO2 (78.08 N2 : 20.95 O2 : 0.04 CO2 : 0.93 Ar). The experiments were configured to target a wide range of conditions, of which shots from 8 to 11.5 km/s at 0.2 Torr (26.7 Pa) are examined in this paper. The non-equilibrium component was chosen to be the focus of this study as it can account for a significant percentage of the emitted radiation for Earth entry, and more importantly, non-equilibrium has traditionally been assigned a large uncertainty for vehicle design. The main goals of this study are to present the shock tube data in the form of a non-equilibrium metric, evaluate the level of agreement between the experiment and simulations, identify key discrepancies and to promote discussion about various aspects of modeling non-equilibrium radiating flows. Radiance profiles integrated over discreet wavelength regions, ranging from the VUV through to the NIR, were compared in order to maximize both the spectral coverage and the number of experiments that could be used in the analysis. A previously defined non-equilibrium metric has been used to allow comparisons with several shots and reveal trends in the data. Overall, LAURAHARA is shown to under-predict EAST by as much as 50 and over-predict by as much as 20 depending on the shock speed. DPLRNEQAIR is shown to under-predict EAST by as much as 40 and over-predict by as much as 12 depending on the shock speed. In terms of an upper bound estimate for the absolute error in wall-directed heat flux, at the lower speeds investigated in this paper, 8 to 9 km/s, even

  17. Gas-Liquid Interfacial Non-Equilibrium Plasmas for Structure Controlled Nanoparticles

    NASA Astrophysics Data System (ADS)

    Kaneko, Toshiro

    2013-10-01

    Plasmas generated in liquid or in contact with liquid have attracted much attention as a novel reactive field in the nano-bio material creation because the brand-new chemical and biological reactions are yielded at the gas-liquid interface, which are induced by the physical actions of the non-equilibrium plasmas. In this study, first, size- and structure-controlled gold nanoparticles (AuNPs) covered with DNA are synthesized using a pulse-driven gas-liquid interfacial discharge plasma (GLIDP) for the application to next-generation drug delivery systems. The size and assembly of the AuNPs are found to be easily controlled by changing the plasma parameters and DNA concentration in the liquid. On the other hand, the mono-dispersed, small-sized, and interval-controlled AuNPs are synthesized by using the carbon nanotubes (CNTs) as a template, where the CNTs are functionalized by the ion and radical irradiation in non-equilibrium plasmas. These new materials are now widely applied to the solar cell, optical devices, and so on. Second, highly-ordered periodic structures of the AuNPs are formed by transcribing the periodic plasma structure to the surface of the liquid, where the spatially selective synthesis of the AuNPs is realized. This phenomenon is well explained by the reduction and oxidation effects of the radicals which are generated by the non-equilibrium plasma irradiation to the liquid and resultant dissociation of the liquid. In addition, it is attempted to form nano- or micro-scale periodic structures of the AuNPs based on the self-organizing behavior of turbulent plasmas generated by the nonlinear development of plasma fluctuations at the gas-liquid interface.

  18. The molecular photo-cell: quantum transport and energy conversion at strong non-equilibrium.

    PubMed

    Ajisaka, Shigeru; Žunkovič, Bojan; Dubi, Yonatan

    2015-02-09

    The molecular photo-cell is a single molecular donor-acceptor complex attached to electrodes and subject to external illumination. Besides the obvious relevance to molecular photo-voltaics, the molecular photo-cell is of interest being a paradigmatic example for a system that inherently operates in out-of-equilibrium conditions and typically far from the linear response regime. Moreover, this system includes electrons, phonons and photons, and environments which induce coherent and incoherent processes, making it a challenging system to address theoretically. Here, using an open quantum systems approach, we analyze the non-equilibrium transport properties and energy conversion performance of a molecular photo-cell, including both coherent and incoherent processes and treating electrons, photons, and phonons on an equal footing. We find that both the non-equilibrium conditions and decoherence play a crucial role in determining the performance of the photovoltaic conversion and the optimal energy configuration of the molecular system.

  19. The Molecular Photo-Cell: Quantum Transport and Energy Conversion at Strong Non-Equilibrium

    PubMed Central

    Ajisaka, Shigeru; Žunkovič, Bojan; Dubi, Yonatan

    2015-01-01

    The molecular photo-cell is a single molecular donor-acceptor complex attached to electrodes and subject to external illumination. Besides the obvious relevance to molecular photo-voltaics, the molecular photo-cell is of interest being a paradigmatic example for a system that inherently operates in out-of-equilibrium conditions and typically far from the linear response regime. Moreover, this system includes electrons, phonons and photons, and environments which induce coherent and incoherent processes, making it a challenging system to address theoretically. Here, using an open quantum systems approach, we analyze the non-equilibrium transport properties and energy conversion performance of a molecular photo-cell, including both coherent and incoherent processes and treating electrons, photons, and phonons on an equal footing. We find that both the non-equilibrium conditions and decoherence play a crucial role in determining the performance of the photovoltaic conversion and the optimal energy configuration of the molecular system. PMID:25660494

  20. The non-equilibrium allele frequency spectrum in a Poisson random field framework.

    PubMed

    Kaj, Ingemar; Mugal, Carina F

    2016-10-01

    In population genetic studies, the allele frequency spectrum (AFS) efficiently summarizes genome-wide polymorphism data and shapes a variety of allele frequency-based summary statistics. While existing theory typically features equilibrium conditions, emerging methodology requires an analytical understanding of the build-up of the allele frequencies over time. In this work, we use the framework of Poisson random fields to derive new representations of the non-equilibrium AFS for the case of a Wright-Fisher population model with selection. In our approach, the AFS is a scaling-limit of the expectation of a Poisson stochastic integral and the representation of the non-equilibrium AFS arises in terms of a fixation time probability distribution. The known duality between the Wright-Fisher diffusion process and a birth and death process generalizing Kingman's coalescent yields an additional representation. The results carry over to the setting of a random sample drawn from the population and provide the non-equilibrium behavior of sample statistics. Our findings are consistent with and extend a previous approach where the non-equilibrium AFS solves a partial differential forward equation with a non-traditional boundary condition. Moreover, we provide a bridge to previous coalescent-based work, and hence tie several frameworks together. Since frequency-based summary statistics are widely used in population genetics, for example, to identify candidate loci of adaptive evolution, to infer the demographic history of a population, or to improve our understanding of the underlying mechanics of speciation events, the presented results are potentially useful for a broad range of topics.

  1. Non-equilibrium freezing behaviour of aqueous systems.

    PubMed

    MacKenzie, A P

    1977-03-29

    The tendencies to non-equilibrium freezing behaviour commonly noted in representative aqueous systems derive from bulk and surface properties according to the circumstances. Supercooling and supersaturation are limited by heterogeneous nucleation in the presence of solid impurities. Homogeneous nucleation has been observed in aqueous systems freed from interfering solids. Once initiated, crystal growth is ofter slowed and, very frequently, terminated with increasing viscosity. Nor does ice first formed always succeed in assuming its most stable crystalline form. Many of the more significant measurements on a given systeatter permitting the simultaneous representation of thermodynamic and non-equilibrium properties. The diagram incorporated equilibrium melting points, heterogeneous nucleation temperatures, homogeneous nucleation temperatures, glass transition and devitrification temperatures, recrystallization temperatures, and, where appropriate, solute solubilities and eutectic temperatures. Taken together, the findings on modle systems aid the identification of the kinetic and thermodynamic factors responsible for the freezing-thawing survival of living cells.

  2. Construction of a Non-Equilibrium Thermal Boundary Layer Facility

    NASA Astrophysics Data System (ADS)

    Biles, Drummond; Ebadi, Alireza; Ma, Allen; White, Christopher

    2015-11-01

    A thermally conductive, electrically heated wall-plate forming the bottom wall of a wind tunnel has been constructed and validation tests have been performed. The wall-plate is a sectioned wall design, where each section is independently heated and controlled. Each section consists of an aluminum 6061 plate, an array of resistive heaters affixed to the bottom of the aluminum plate, and a calcium silicate holder used for thermal isolation. Embedded thermocouples in the aluminum plates are used to monitor the wall temperature and for feedback control of wall heating. The wall-plate is used to investigate thermal transport in both equilibrium and non-equilibrium boundary layers. The non-equilibrium boundary layer flow investigated is oscillatory flow produced by a rotor-stator mechanism placed downstream of the test section of the wind tunnel.

  3. Entropy Production and Non-Equilibrium Steady States

    NASA Astrophysics Data System (ADS)

    Suzuki, Masuo

    2013-01-01

    The long-term issue of entropy production in transport phenomena is solved by separating the symmetry of the non-equilibrium density matrix ρ(t) in the von Neumann equation, as ρ(t) = ρs(t) + ρa(t) with the symmetric part ρs(t) and antisymmetric part ρa(t). The irreversible entropy production (dS/dt)irr is given in M. Suzuki, Physica A 390(2011)1904 by (dS/dt)irr = Tr( {H}(dρ s{(t)/dt))}/T for the Hamiltonian {H} of the relevant system. The general formulation of the extended von Neumann equation with energy supply and heat extraction is reviewed from the author's paper (M. S.,Physica A391(2012)1074). irreversibility; entropy production; transport phenomena; electric conduction; thermal conduction; linear response; Kubo formula; steady state; non-equilibrium density matrix; energy supply; symmetry-separated von Neumann equation; unboundedness.

  4. Boltzmann equation solver adapted to emergent chemical non-equilibrium

    SciTech Connect

    Birrell, Jeremiah; Wilkening, Jon; Rafelski, Johann

    2015-01-15

    We present a novel method to solve the spatially homogeneous and isotropic relativistic Boltzmann equation. We employ a basis set of orthogonal polynomials dynamically adapted to allow for emergence of chemical non-equilibrium. Two time dependent parameters characterize the set of orthogonal polynomials, the effective temperature T(t) and phase space occupation factor ϒ(t). In this first paper we address (effectively) massless fermions and derive dynamical equations for T(t) and ϒ(t) such that the zeroth order term of the basis alone captures the particle number density and energy density of each particle distribution. We validate our method and illustrate the reduced computational cost and the ability to easily represent final state chemical non-equilibrium by studying a model problem that is motivated by the physics of the neutrino freeze-out processes in the early Universe, where the essential physical characteristics include reheating from another disappearing particle component (e{sup ±}-annihilation)

  5. Non-equilibrium Reaction Kinetics in Molecular Solids

    NASA Astrophysics Data System (ADS)

    Wood, Mitchell; Strachan, Alejandro

    We explore the possibility of non-statistical chemical reactions in condense-phase energetic materials via reactive molecular dynamics (MD) simulations. We characterize the response of three unique high energy density molecular crystals to different types of insults: electric fields of various frequencies (100-4000cm-1) and strengths and direct heating at various rates. We find that non-equilibrium states can be created for short timescales when energy input targets specific vibrations through the electric fields, and that equilibration eventually occurs even while the insults remain present. Interestingly, for strong fields these relaxation timescales are comparable to those of the initial chemical decomposition of the molecules. Details of how this vibrational energy localization affects the preferred uni- or multi-molecular reactions are discussed. These results provide insight into non-equilibrium or coherent initiation of chemistry in the condensed phase that would of interest in fields ranging from catalysis to explosives.

  6. Investigation of Non-Equilibrium Radiation for Earth Entry

    NASA Technical Reports Server (NTRS)

    Brandis, A. M.; Johnston, C. O.; Cruden, B. A.

    2016-01-01

    For Earth re-entry at velocities between 8 and 11.5 km/s, the accuracy of NASA's computational uid dynamic and radiative simulations of non-equilibrium shock layer radiation is assessed through comparisons with measurements. These measurements were obtained in the NASA Ames Research Center's Electric Arc Shock Tube (EAST) facility. The experiments were aimed at measuring the spatially and spectrally resolved radiance at relevant entry conditions for both an approximate Earth atmosphere (79% N2 : 21% O2 by mole) as well as a more accurate composition featuring the trace species Ar and CO2 (78.08% N2 : 20.95% O2 : 0.04% CO2 : 0.93% Ar by mole). The experiments were configured to target a wide range of conditions, of which shots from 8 to 11.5 km/s at 0.2 Torr (26.7 Pa) are examined in this paper. The non-equilibrium component was chosen to be the focus of this study as it can account for a significant percentage of the emitted radiation for Earth re-entry, and more importantly, non-equilibrium has traditionally been assigned a large uncertainty for vehicle design. The main goals of this study are to present the shock tube data in the form of a non-equilibrium metric, evaluate the level of agreement between the experiment and simulations, identify key discrepancies and to examine critical aspects of modeling non-equilibrium radiating flows. Radiance pro les integrated over discreet wavelength regions, ranging from the Vacuum Ultra Violet (VUV) through to the Near Infra-Red (NIR), were compared in order to maximize both the spectral coverage and the number of experiments that could be used in the analysis. A previously defined non-equilibrium metric has been used to allow comparisons with several shots and reveal trends in the data. Overall, LAURA/HARA is shown to under-predict EAST by as much as 40% and over-predict by as much as 12% depending on the shock speed. DPLR/NEQAIR is shown to under-predict EAST by as much as 50% and over-predict by as much as 20% depending

  7. PREFACE: International Symposium on Non-Equilibrium Soft Matter 2010 International Symposium on Non-Equilibrium Soft Matter 2010

    NASA Astrophysics Data System (ADS)

    Kawakatsu, T.; Matsuyama, A.; Ohta, T.; Tanaka, H.; Tanaka, S.

    2011-07-01

    Soft matter is a rapidly growing interdisciplinary research field covering a range of subject areas including physics, chemistry, biology, mathematics and engineering. Some of the important universal features of these materials are their mesoscopic structures and their dynamics. Due to the existence of such large-scale structures, which nevertheless exhibit interactions of the order of the thermal energy, soft matter can readily be taken out of equilibrium by imposing a weak external field such as an electric field, a mechanical stress or a shear flow. The importance of the coexistence of microscopic molecular dynamics and the mesoscopic/macroscopic structures and flows requires us to develop hierarchical approaches to understand the nonlinear and nonequilibrium phenomena, which is one of the central issues of current soft matter research. This special section presents selected contributions from the 'International Symposium on Non-Equilibrium Soft Matter 2010' held from 17-20 August 2010 in Nara, Japan, which aimed to describe recent advances in soft matter research focusing especially on its nonequilibrium aspects. The topics discussed cover statics and dynamics of a wide variety of materials ranging from traditional soft matter like polymers, gels, emulsions, liquid crystals and colloids to biomaterials such as biopolymers and biomembranes. Among these studies, we highlighted the physics of biomembranes and vesicles, which has attracted great attention during the last decade; we organized a special session for this active field. The work presented in this issue deals with (1) structure formation in biomembranes and vesicles, (2) rheology of polymers and gels, (3) mesophases in block copolymers, (4) mesoscopic structures in liquid crystals and ionic liquids, and (5) nonequilibrium dynamics. This symposium was organized as part of a research project supported by the Grant-in-Aid for the priority area 'Soft Matter Physics' (2006-2010) from the Ministry of Education

  8. Reaction rates of oxygen with hemoglobin measured by non-equilibrium facilitated oxygen diffusion through hemoglobin solutions.

    PubMed

    Bouwer, S T; Hoofd, L; Kreuzer, F

    2001-02-16

    The purpose of this study was to verify the concept of non-equilibrium facilitated oxygen diffusion. This work succeeds our previous study, where facilitated oxygen diffusion by hemoglobin was measured at conditions of chemical equilibrium, and which yielded diffusion coefficients of hemoglobin and of oxygen. In the present work chemical non-equilibrium was induced using very thin diffusion layers. As a result, facilitation was decreased as predicted by theory. Thus, this work presents the first experimental demonstration of non-equilibrium facilitated oxygen diffusion. In addition, association and dissociation rate parameters of the reaction between oxygen and bovine and human hemoglobin were calculated and the effect of the homotropic and heterotropic interactions on each rate parameter was demonstrated. The results indicate that the homotropic interaction--which leads to increasing oxygen affinity with increasing oxygenation--is predominantly due to an increase in the association rate. The heterotropic interaction--which leads to decreasing oxygen affinity by anionic ligands--appears to be effected in two ways. Cl- increases the dissociation rate. In contrast, 2,3-diphosphoglycerate decreases the association rate.

  9. Application of extremely non-equilibrium plasmas in the processing of nano and biomedical materials

    NASA Astrophysics Data System (ADS)

    Mozetič, Miran; Primc, Gregor; Vesel, Alenka; Zaplotnik, Rok; Modic, Martina; Junkar, Ita; Recek, Nina; Klanjšek-Gunde, Marta; Guhy, Lukus; Sunkara, Mahendra K.; Assensio, Maria C.; Milošević, Slobodan; Lehocky, Marian; Sedlarik, Vladimir; Gorjanc, Marija; Kutasi, Kinga; Stana-Kleinschek, Karin

    2015-02-01

    Some applications of extremely non-equilibrium oxygen plasma for tailoring the surface properties of organic as well as inorganic materials are presented. Plasma of low or moderate ionization fraction and very high dissociation fraction is created by high frequency electrodeless discharges created in chambers made from a material of low recombination coefficient. The O atom density often exceeds 1021 m-3 which allows for rapid functionalization of carbon-containing materials. Surface saturation with polar oxygen-rich groups is achieved in a fraction of a second and further exposure leads to etching. The etching is often non-uniform and results in nano-structuring of surface morphology. A combination of rich morphology and saturation with polar functional groups allows for a super-hydrophilic character of originally hydrophobic materials. Polymer composites are etched selectively so the polymer component is removed from the sample surface, leading to modified surface properties. Furthermore, such a treatment allows for distinguishing the distribution and orientation of fillers inside the polymer matrix. The exposure of inorganic materials to non-equilibrium oxygen plasma causes one-dimensional growth of metal oxide nanoparticles, thus representing a unique technique for the rapid catalyser-free growth of nanowires.

  10. Hsp70 chaperones are non-equilibrium machines that achieve ultra-affinity by energy consumption.

    PubMed

    De Los Rios, Paolo; Barducci, Alessandro

    2014-05-27

    70-kDa Heat shock proteins are ATP-driven molecular chaperones that perform a myriad of essential cellular tasks. Although structural and biochemical studies have shed some light on their functional mechanism, the fundamental issue of the role of energy consumption, due to ATP-hydrolysis, has remained unaddressed. Here we establish a clear connection between the non-equilibrium nature of Hsp70, due to ATP hydrolysis, and the determining feature of its function, namely its high affinity for its substrates. Energy consumption can indeed decrease the dissociation constant of the chaperone-substrate complex by several orders of magnitude with respect to an equilibrium scenario. We find that the biochemical requirements for observing such ultra-affinity coincide with the physiological conditions in the cell. Our results rationalize several experimental observations and pave the way for further analysis of non-equilibrium effects underlying chaperone functions.DOI: http://dx.doi.org/10.7554/eLife.02218.001.

  11. Novel mapping in non-equilibrium stochastic processes

    NASA Astrophysics Data System (ADS)

    Heseltine, James; Kim, Eun-jin

    2016-04-01

    We investigate the time-evolution of a non-equilibrium system in view of the change in information and provide a novel mapping relation which quantifies the change in information far from equilibrium and the proximity of a non-equilibrium state to the attractor. Specifically, we utilize a nonlinear stochastic model where the stochastic noise plays the role of incoherent regulation of the dynamical variable x and analytically compute the rate of change in information (information velocity) from the time-dependent probability distribution function. From this, we quantify the total change in information in terms of information length { L } and the associated action { J }, where { L } represents the distance that the system travels in the fluctuation-based, statistical metric space parameterized by time. As the initial probability density function’s mean position (μ) is decreased from the final equilibrium value {μ }* (the carrying capacity), { L } and { J } increase monotonically with interesting power-law mapping relations. In comparison, as μ is increased from {μ }*,{ L } and { J } increase slowly until they level off to a constant value. This manifests the proximity of the state to the attractor caused by a strong correlation for large μ through large fluctuations. Our proposed mapping relation provides a new way of understanding the progression of the complexity in non-equilibrium system in view of information change and the structure of underlying attractor.

  12. Characterization of non equilibrium effects on high quality critical flows

    SciTech Connect

    Camelo, E.; Lemonnier, H.; Ochterbeck, J.

    1995-09-01

    The appropriate design of various pieces of safety equipment such as relief systems, relies on the accurate description of critical flow phenomena. Most of the systems of industrial interest are willing to be described by one-dimensional area-averaged models and a large fraction of them involves multi-component high gas quality flows. Within these circumstances, the flow is very likely to be of an annular dispersed nature and its description by two-fluid models requires various closure relations. Among the most sensitive closures, there is the interfacial area and the liquid entrained fraction. The critical flowrate depends tremendously on the accurate description of the non equilibrium which results from the correctness of the closure equations. In this study, two-component flows are emphasized and non equilibrium results mainly form the differences in the phase velocities. It is therefore of the utmost importance to have reliable data to characterize non equilibrium phenomena and to assess the validity of the closure models. A comprehensive description of air-water nozzle flows, with emphasis on the effect of the nozzle geometry, has been undertaken and some of the results are presented here which helps understanding the overall flow dynamics. Besides the critical flowrate, the presented material includes pressure profiles, droplet size and velocity, liquid film flowrate and liquid film thickness.

  13. Upwind MacCormack Euler solver with non-equilibrium chemistry

    NASA Technical Reports Server (NTRS)

    Sherer, Scott E.; Scott, James N.

    1993-01-01

    A computer code, designated UMPIRE, is currently under development to solve the Euler equations in two dimensions with non-equilibrium chemistry. UMPIRE employs an explicit MacCormack algorithm with dissipation introduced via Roe's flux-difference split upwind method. The code also has the capability to employ a point-implicit methodology for flows where stiffness is introduced through the chemical source term. A technique consisting of diagonal sweeps across the computational domain from each corner is presented, which is used to reduce storage and execution requirements. Results depicting one dimensional shock tube flow for both calorically perfect gas and thermally perfect, dissociating nitrogen are presented to verify current capabilities of the program. Also, computational results from a chemical reactor vessel with no fluid dynamic effects are presented to check the chemistry capability and to verify the point implicit strategy.

  14. Non-equilibrium theory employing enthalpy-based equation of state for binary solid and porous mixtures

    NASA Astrophysics Data System (ADS)

    Nayak, B.; Menon, S. V. G.

    2017-04-01

    A generalized enthalpy-based equation of state, which includes thermal electron excitations and non-equilibrium thermal energies, is formulated for binary solid and porous mixtures. Our approach gives rise to an extra contribution to mixture volume, in addition to those corresponding to average mixture parameters. This excess term involves the difference of thermal enthalpies of the two components, which depend on their individual temperatures. We propose to use the Hugoniot of the components to compute non-equilibrium temperatures in the mixture. These are then compared with the average temperature obtained from the mixture Hugoniot, thereby giving an estimate of non-equilibrium effects. The Birch-Murnaghan model for the zero-temperature isotherm and a linear thermal model are then used for applying the method to several mixtures, including one porous case. Comparison with experimental data on the pressure-volume Hugoniot and shock speed versus particle speed shows good agreement.

  15. Stochastic Approaches to Understanding Dissociations in Inflectional Morphology

    ERIC Educational Resources Information Center

    Plunkett, Kim; Bandelow, Stephan

    2006-01-01

    Computer modelling research has undermined the view that double dissociations in behaviour are sufficient to infer separability in the cognitive mechanisms underlying those behaviours. However, all these models employ "multi-modal" representational schemes, where functional specialisation of processing emerges from the training process.…

  16. Stochastic Approaches to Understanding Dissociations in Inflectional Morphology

    ERIC Educational Resources Information Center

    Plunkett, Kim; Bandelow, Stephan

    2006-01-01

    Computer modelling research has undermined the view that double dissociations in behaviour are sufficient to infer separability in the cognitive mechanisms underlying those behaviours. However, all these models employ "multi-modal" representational schemes, where functional specialisation of processing emerges from the training process.…

  17. Non-equilibrium mechanisms of light in the microwave region

    NASA Astrophysics Data System (ADS)

    Mortenson, Juliana H. J.

    2011-09-01

    Quantum mechanics and quantum chemistry have taught for more than 100 years that "photons" associated with microwaves cannot exert photochemical effects because their "photon energies" are smaller than chemical bond energies. Those quantum theories have been strongly contradicted within the last few decades by physical experiments demonstrating non-equilibrium, photochemical and photomaterial activity by microwaves. Reactions among scientists to these real physical models and proofs have varied from disbelief and denial, to acceptance of the real physical phenomena and demands for revisions to quantum theory. At the previous "Nature of Light" meeting, an advance in the foundations of quantum mechanics was presented. Those discoveries have revealed the source of these conflicts between quantum theory and microwave experiments. Critical variables and constants were missing from quantum theory due to a minor mathematical inadvertence in Planck's original quantum work. As a result, erroneous concepts were formed nearly a century ago regarding the energetics and mechanisms of lower frequency light, such as in the microwave region. The new discoveries have revealed that the traditional concept of "photons" mistakenly attributed elementary particle status to what is actually an arbitrarily time-based collection of sub-photonic, elementary particles. In a mathematical dimensional sense, those time-based energy measurements cannot be mathematically equivalent to bond energies as historically believed. Only an "isolated quantity of energy", as De Broglie referred to it, can be equivalent to bond energy. With the aid of the new variables and constants, the non-equilibrium mechanisms of light in the microwave region can now be described. They include resonant absorption, splitting frequency stimulation leading to electronic excitation, and resonant acoustic transduction. Numerous practical engineering applications can be envisioned for non-equilibrium microwaves.

  18. General Reynolds analogy on curved surfaces in hypersonic rarefied gas flows with non-equilibrium chemical reactions

    NASA Astrophysics Data System (ADS)

    Xingxing, Chen; Zhihui, Wang; Yongliang, Yu

    2016-11-01

    Hypersonic chemical non-equilibrium gas flows around blunt nosed bodies are studied in the present paper to investigate the Reynolds analogy relation on curved surfaces. With a momentum and energy transfer model being applied through boundary layers, influences of molecular dissociations and recombinations on skin frictions and heat fluxes are separately modeled. Expressions on the ratio of Cf / Ch (skin friction coefficient to heat flux) are presented along the surface of circular cylinders under the ideal dissociation gas model. The analysis indicates that molecular dissociations increase the linear distribution of Cf / Ch, but the nonlinear Reynolds analogy relation could ultimately be obtained in flows with larger Reynolds numbers and Mach numbers, where the decrease of wall heat flux by molecular recombinations signifies. The present modeling and analyses are also verified by the DSMC calculations on nitrogen gas flows.

  19. Fluctuations and large deviations in non-equilibrium systems

    NASA Astrophysics Data System (ADS)

    Derrida, B.

    2005-05-01

    For systems in contact with two reservoirs at different densities or with two thermostats at different temperatures, the large deviation function of the density gives a possible way of extending the notion of free energy to non-equilibrium systems. This large deviation function of the density can be calculated explicitly for exclusion models in one dimension with open boundary conditions. For these models, one can also obtain the distribution of the current of particles flowing through the system and the results lead to a simple conjecture for the large deviation function of the current of more general diffusive systems.

  20. The non-equilibrium nature of culinary evolution

    NASA Astrophysics Data System (ADS)

    Kinouchi, Osame; Diez-Garcia, Rosa W.; Holanda, Adriano J.; Zambianchi, Pedro; Roque, Antonio C.

    2008-07-01

    Food is an essential part of civilization, with a scope that ranges from the biological to the economic and cultural levels. Here, we study the statistics of ingredients and recipes taken from Brazilian, British, French and Medieval cookery books. We find universal distributions with scale invariant behaviour. We propose a copy-mutate process to model culinary evolution that fits our empirical data very well. We find a cultural 'founder effect' produced by the non-equilibrium dynamics of the model. Both the invariant and idiosyncratic aspects of culture are accounted for by our model, which may have applications in other kinds of evolutionary processes.

  1. Shape characteristics of equilibrium and non-equilibrium fractal clusters.

    PubMed

    Mansfield, Marc L; Douglas, Jack F

    2013-07-28

    It is often difficult in practice to discriminate between equilibrium and non-equilibrium nanoparticle or colloidal-particle clusters that form through aggregation in gas or solution phases. Scattering studies often permit the determination of an apparent fractal dimension, but both equilibrium and non-equilibrium clusters in three dimensions frequently have fractal dimensions near 2, so that it is often not possible to discriminate on the basis of this geometrical property. A survey of the anisotropy of a wide variety of polymeric structures (linear and ring random and self-avoiding random walks, percolation clusters, lattice animals, diffusion-limited aggregates, and Eden clusters) based on the principal components of both the radius of gyration and electric polarizability tensor indicates, perhaps counter-intuitively, that self-similar equilibrium clusters tend to be intrinsically anisotropic at all sizes, while non-equilibrium processes such as diffusion-limited aggregation or Eden growth tend to be isotropic in the large-mass limit, providing a potential means of discriminating these clusters experimentally if anisotropy could be determined along with the fractal dimension. Equilibrium polymer structures, such as flexible polymer chains, are normally self-similar due to the existence of only a single relevant length scale, and are thus anisotropic at all length scales, while non-equilibrium polymer structures that grow irreversibly in time eventually become isotropic if there is no difference in the average growth rates in different directions. There is apparently no proof of these general trends and little theoretical insight into what controls the universal anisotropy in equilibrium polymer structures of various kinds. This is an obvious topic of theoretical investigation, as well as a matter of practical interest. To address this general problem, we consider two experimentally accessible ratios, one between the hydrodynamic and gyration radii, the other

  2. Non-Equilibrium Radiation from Shock-Heated Air

    DTIC Science & Technology

    1991-07-01

    v- n 260nm LTER" vkT 4e_-. W 4 e IW- l watts (1) 2 (Q r)u cm3 sr cm - I r 0 I I .l I 1 I I I j 0 2 4 6 8 10 12 14 16 18 20 22 where CALCULATED ...Measurements, 210 nm 293 6 Radiation Measurements, 2 0 nm 30 7 Infrared Radiation Matrix, Experiment and Calculation 31 8 Three Temporal Parameters...Characterizing Non-equilibrium 32 I Infrared Radiation 9 Infrared Incubation Time, Experiment and Calculation 33 1 1 0 Infrared Time-To-Half-Peak

  3. The Concept of Peritraumatic Dissociation: A Qualitative Approach.

    PubMed

    Mattos, Patrícia Ferreira; Pedrini, João Alencar; Fiks, José Paulo; de Mello, Marcelo Feijó

    2016-06-01

    Peritraumatic dissociation has been considered an important feature for the development of post-traumatic stress disorders, but this concept remains widely unclear. To explore the peritraumatic experience, we interviewed eight victims of urban violence shortly after their traumatic events. The data collected were compared and analyzed according to the systematic set of procedures of Grounded Theory (GT). The alterations reported by participants were coded and categorized according to their perceptions of their inner and outer world, and the impressions of others involved, including the examiner's observations. The theoretical perspective for interpreting this study has parallels with Jaspers' psychopathology. Peritraumatic dissociation was conceived as a failure of synthesis among emerging stimuli from the internal and the external world, including the time-space flow structure, even when cognitive-perceptual tools remain intact. This synthesis qualifies the totality of the perceptual experience as coherent and meaningful to conscience, enabling possibilities for being/existing.

  4. Non-equilibrium configurational Prigogine-Defay ratio

    NASA Astrophysics Data System (ADS)

    Garden, Jean-Luc; Guillou, Hervé; Richard, Jacques; Wondraczek, Lothar

    2012-06-01

    Classically, the Prigogine-Defay (PD) ratio involves differences in isobaric heat capacity, isothermal compressibility, and isobaric thermal expansion coefficient between a super-cooled liquid and the corresponding glass at the glass transition. However, determining such differences by extrapolation of coefficients that have been measured for super-cooled liquid and glassy state, respectively, poses the problem that it does not exactly take into account the non-equilibrium character of the glass transition. In this paper, we assess this question by taking into account the time dependence of configurational contributions to the three thermodynamic coefficients in the glass transition range upon varying temperature and/or pressure. Macroscopic non-equilibrium thermodynamics is applied to obtain a generalised form of the PD ratio. The classical PD ratio can then be taken as a particular case of this generalisation. Under some assumptions, the configurational PD ratio (CPD ratio) can be expressed in terms of fictive temperature and fictive pressure which, hence, provides another possibility to experimentally verify this formalism.

  5. Non-equilibrium magnetic interactions in strongly correlated systems

    SciTech Connect

    Secchi, A.; Brener, S.; Lichtenstein, A.I.; Katsnelson, M.I.

    2013-06-15

    We formulate a low-energy theory for the magnetic interactions between electrons in the multi-band Hubbard model under non-equilibrium conditions determined by an external time-dependent electric field which simulates laser-induced spin dynamics. We derive expressions for dynamical exchange parameters in terms of non-equilibrium electronic Green functions and self-energies, which can be computed, e.g., with the methods of time-dependent dynamical mean-field theory. Moreover, we find that a correct description of the system requires, in addition to exchange, a new kind of magnetic interaction, that we name twist exchange, which formally resembles Dzyaloshinskii–Moriya coupling, but is not due to spin–orbit, and is actually due to an effective three-spin interaction. Our theory allows the evaluation of the related time-dependent parameters as well. -- Highlights: •We develop a theory for magnetism of strongly correlated systems out of equilibrium. •Our theory is suitable for laser-induced ultrafast magnetization dynamics. •We write time-dependent exchange parameters in terms of electronic Green functions. •We find a new magnetic interaction, a “twist exchange”. •We give general expressions for magnetic noise in itinerant-electron systems.

  6. Macroscopic Fluctuation Theory for Stationary Non-Equilibrium States

    NASA Astrophysics Data System (ADS)

    Bertini, L.; de Sole, A.; Gabrielli, D.; Jona-Lasinio, G.; Landim, C.

    2002-05-01

    We formulate a dynamical fluctuation theory for stationary non-equilibrium states (SNS) which is tested explicitly in stochastic models of interacting particles. In our theory a crucial role is played by the time reversed dynamics. Within this theory we derive the following results: the modification of the Onsager-Machlup theory in the SNS; a general Hamilton-Jacobi equation for the macroscopic entropy; a non-equilibrium, nonlinear fluctuation dissipation relation valid for a wide class of systems; an H theorem for the entropy. We discuss in detail two models of stochastic boundary driven lattice gases: the zero range and the simple exclusion processes. In the first model the invariant measure is explicitly known and we verify the predictions of the general theory. For the one dimensional simple exclusion process, as recently shown by Derrida, Lebowitz, and Speer, it is possible to express the macroscopic entropy in terms of the solution of a nonlinear ordinary differential equation; by using the Hamilton-Jacobi equation, we obtain a logically independent derivation of this result.

  7. Mesoscopic non-equilibrium thermodynamic analysis of molecular motors.

    PubMed

    Kjelstrup, S; Rubi, J M; Pagonabarraga, I; Bedeaux, D

    2013-11-28

    We show that the kinetics of a molecular motor fueled by ATP and operating between a deactivated and an activated state can be derived from the principles of non-equilibrium thermodynamics applied to the mesoscopic domain. The activation by ATP, the possible slip of the motor, as well as the forward stepping carrying a load are viewed as slow diffusion along a reaction coordinate. Local equilibrium is assumed in the reaction coordinate spaces, making it possible to derive the non-equilibrium thermodynamic description. Using this scheme, we find expressions for the velocity of the motor, in terms of the driving force along the spacial coordinate, and for the chemical reaction that brings about activation, in terms of the chemical potentials of the reactants and products which maintain the cycle. The second law efficiency is defined, and the velocity corresponding to maximum power is obtained for myosin movement on actin. Experimental results fitting with the description are reviewed, giving a maximum efficiency of 0.45 at a myosin headgroup velocity of 5 × 10(-7) m s(-1). The formalism allows the introduction and test of meso-level models, which may be needed to explain experiments.

  8. Non-equilibrium phenomena in disordered colloidal solids

    NASA Astrophysics Data System (ADS)

    Yunker, Peter

    Colloidal particles are a convenient tool for studying a variety of non-equilibrium phenomena. I will discuss experiments that investigate the aging and non-equilibrium growth of disordered solids. In the first set of experiments, colloidal glasses are rapidly formed to study aging in jammed packings. A colloidal fluid, composed of micron-sized temperature-sensitive pNIPAM particles, is rapidly quenched into a colloidal glass. After the glass is formed, collective rearrangements occur as the glass ages. Particles that undergo irreversible rearrangements, which break nearest-neighbor pairings and allow the glass to relax, are identified. These irreversible rearrangements are accompanied by large clusters of fast moving particles; the number of particles involved in these clusters increases as the glass ages, leading to the slowing of dynamics that is characteristic of aging. In the second set of experiments, we study the role particle shape, and thus, interparticle interaction, plays in the formation of disordered solids with different structural and mechanical properties. Aqueous suspensions of colloidal particles with different shapes evaporate on glass slides. Convective flows during evaporation carry particles from drop center to drop edge, where they accumulate. The resulting particle deposits grow heterogeneously from the edge on the air-water interface. Three distinct growth processes were discovered in the evaporating colloidal suspensions by tuning particle shape-dependent capillary interactions and thus varying the microscopic rules of deposition. Mechanical testing of these particulate deposits reveals that the deposit bending rigidity increases as particles become more anisotropic in shape.

  9. NON-EQUILIBRIUM ELECTRONS IN THE OUTSKIRTS OF GALAXY CLUSTERS

    SciTech Connect

    Avestruz, Camille; Nagai, Daisuke; Lau, Erwin T.; Nelson, Kaylea E-mail: camille.avestruz@yale.edu

    2015-08-01

    The analysis of X-ray and Sunyaev–Zel’dovich measurements of the intracluster medium (ICM) assumes that electrons are in thermal equilibrium with ions in the plasma. However, in the outskirts of galaxy clusters, the electron–ion equilibration timescale can become comparable to the Hubble time, leading to systematic biases in cluster mass estimates and mass-observable scaling relations. To quantify an upper limit of the impact of non-equilibrium electrons, we use a mass-limited sample of simulated galaxy clusters taken from a cosmological simulation with a two-temperature model that assumes the Spitzer equilibration time for the electrons and ions. We show that the temperature bias is more pronounced in more massive and rapidly accreting clusters. For the most extreme case, we find that the bias is of the order of 10% at half of the cluster virial radius and increases to 40% at the edge of the cluster. Gas in filaments is less susceptible to the non-equilibrium effect, leading to azimuthal variations in the temperature bias at large cluster-centric radii. Using mock Chandra observations of simulated clusters, we show that the bias manifests in ultra-deep X-ray observations of cluster outskirts and quantify the resulting biases in hydrostatic mass and cluster temperature derived from these observations. We provide a mass-dependent fitting function for the temperature bias profile, which can be useful for modeling the effect of electron-ion equilibration in galaxy clusters.

  10. Non-equilibrium thermodynamics analysis of transcriptional regulation kinetics

    NASA Astrophysics Data System (ADS)

    Hernández-Lemus, Enrique; Tovar, Hugo; Mejía, Carmen

    2014-12-01

    Gene expression in eukaryotic cells is an extremely complex and interesting phenomenon whose dynamics are controlled by a large number of subtle physicochemical processes commonly described by means of gene regulatory networks. Such networks consist in a series of coupled chemical reactions, conformational changes, and other biomolecular processes involving the interaction of the DNA molecule itself with a number of proteins usually called transcription factors as well as enzymes and other components. The kinetics behind the functioning of such gene regulatory networks are largely unknown, though its description in terms of non-equilibrium thermodynamics has been discussed recently. In this work we will derive general kinetic equations for a gene regulatory network from a non-equilibrium thermodynamical description and discuss its use in understanding the free energy constrains imposed in the network structure. We also will discuss explicit expressions for the kinetics of a simple model of gene regulation and show that the kinetic role of mRNA decay during the RNA synthesis stage (or transcription) is somehow limited due to the comparatively low values of decay rates. At the level discussed here, this implies a decoupling of the kinetics of mRNA synthesis and degradation a fact that may become quite useful when modeling gene regulatory networks from experimental data on whole genome gene expression.

  11. Non-equilibrium thermodynamics of harmonically trapped bosons

    NASA Astrophysics Data System (ADS)

    Ángel García-March, Miguel; Fogarty, Thomás; Campbell, Steve; Busch, Thomas; Paternostro, Mauro

    2016-10-01

    We apply the framework of non-equilibrium quantum thermodynamics to the physics of quenched small-sized bosonic quantum gases in a one-dimensional harmonic trap. We show that dynamical orthogonality can occur in these few-body systems with strong interactions after a quench and we find its occurrence analytically for an infinitely repulsive pair of atoms. We further show this phenomena is related to the fundamental excitations that dictate the dynamics from the spectral function. We establish a clear qualitative link between the amount of (irreversible) work performed on the system and the establishment of entanglement. We extend our analysis to multipartite systems by examining the case of three trapped atoms. We show the initial (pre-quench) interactions play a vital role in determining the dynamical features, while the qualitative features of the two particle case appear to remain valid. Finally, we propose the use of the atomic density profile as a readily accessible indicator of the non-equilibrium properties of the systems in question.

  12. Non-equilibrium theory of arrested spinodal decomposition

    SciTech Connect

    Olais-Govea, José Manuel; López-Flores, Leticia; Medina-Noyola, Magdaleno

    2015-11-07

    The non-equilibrium self-consistent generalized Langevin equation theory of irreversible relaxation [P. E. Ramŕez-González and M. Medina-Noyola, Phys. Rev. E 82, 061503 (2010); 82, 061504 (2010)] is applied to the description of the non-equilibrium processes involved in the spinodal decomposition of suddenly and deeply quenched simple liquids. For model liquids with hard-sphere plus attractive (Yukawa or square well) pair potential, the theory predicts that the spinodal curve, besides being the threshold of the thermodynamic stability of homogeneous states, is also the borderline between the regions of ergodic and non-ergodic homogeneous states. It also predicts that the high-density liquid-glass transition line, whose high-temperature limit corresponds to the well-known hard-sphere glass transition, at lower temperature intersects the spinodal curve and continues inside the spinodal region as a glass-glass transition line. Within the region bounded from below by this low-temperature glass-glass transition and from above by the spinodal dynamic arrest line, we can recognize two distinct domains with qualitatively different temperature dependence of various physical properties. We interpret these two domains as corresponding to full gas-liquid phase separation conditions and to the formation of physical gels by arrested spinodal decomposition. The resulting theoretical scenario is consistent with the corresponding experimental observations in a specific colloidal model system.

  13. Non-equilibrium theory of arrested spinodal decomposition.

    PubMed

    Olais-Govea, José Manuel; López-Flores, Leticia; Medina-Noyola, Magdaleno

    2015-11-07

    The non-equilibrium self-consistent generalized Langevin equation theory of irreversible relaxation [P. E. Ramŕez-González and M. Medina-Noyola, Phys. Rev. E 82, 061503 (2010); 82, 061504 (2010)] is applied to the description of the non-equilibrium processes involved in the spinodal decomposition of suddenly and deeply quenched simple liquids. For model liquids with hard-sphere plus attractive (Yukawa or square well) pair potential, the theory predicts that the spinodal curve, besides being the threshold of the thermodynamic stability of homogeneous states, is also the borderline between the regions of ergodic and non-ergodic homogeneous states. It also predicts that the high-density liquid-glass transition line, whose high-temperature limit corresponds to the well-known hard-sphere glass transition, at lower temperature intersects the spinodal curve and continues inside the spinodal region as a glass-glass transition line. Within the region bounded from below by this low-temperature glass-glass transition and from above by the spinodal dynamic arrest line, we can recognize two distinct domains with qualitatively different temperature dependence of various physical properties. We interpret these two domains as corresponding to full gas-liquid phase separation conditions and to the formation of physical gels by arrested spinodal decomposition. The resulting theoretical scenario is consistent with the corresponding experimental observations in a specific colloidal model system.

  14. Non-equilibrium theory of arrested spinodal decomposition

    NASA Astrophysics Data System (ADS)

    Olais-Govea, José Manuel; López-Flores, Leticia; Medina-Noyola, Magdaleno

    2015-11-01

    The non-equilibrium self-consistent generalized Langevin equation theory of irreversible relaxation [P. E. Ramŕez-González and M. Medina-Noyola, Phys. Rev. E 82, 061503 (2010); 82, 061504 (2010)] is applied to the description of the non-equilibrium processes involved in the spinodal decomposition of suddenly and deeply quenched simple liquids. For model liquids with hard-sphere plus attractive (Yukawa or square well) pair potential, the theory predicts that the spinodal curve, besides being the threshold of the thermodynamic stability of homogeneous states, is also the borderline between the regions of ergodic and non-ergodic homogeneous states. It also predicts that the high-density liquid-glass transition line, whose high-temperature limit corresponds to the well-known hard-sphere glass transition, at lower temperature intersects the spinodal curve and continues inside the spinodal region as a glass-glass transition line. Within the region bounded from below by this low-temperature glass-glass transition and from above by the spinodal dynamic arrest line, we can recognize two distinct domains with qualitatively different temperature dependence of various physical properties. We interpret these two domains as corresponding to full gas-liquid phase separation conditions and to the formation of physical gels by arrested spinodal decomposition. The resulting theoretical scenario is consistent with the corresponding experimental observations in a specific colloidal model system.

  15. Scalar Fluctuations from Extended Non-equilibrium Thermodynamic States

    NASA Astrophysics Data System (ADS)

    Nettleton, R. E.

    1985-10-01

    In the framework of extended non-equilibrium thermodynamics, the local non-equilibrium state of a liquid is described by the density, temperature, and a structural variable, ζ, and its rate-of-change. ζ is the ensemble average of a function A (Q) of the configuration co-ordinates, and it is assumed to relax to local equilibrium in a time short compared to the time for diffusion of an appreciable number of particles into the system. By a projection operator technique of Grabert, an equation is derived from the Liouville equation for the distribution of fluctuations in TV, the particle number, and in A and Ȧ. An approximate solution is proposed which exhibits nonequilibrium corrections to the Einstein function in the form of a sum of thermodynamic forces. For a particular structural model, the corresponding non-Einstein contributions to correlation functions are estimated to be very small. For variables of the type considered here, the thermodynamic pressure is found to equal the pressure trace.

  16. The non-equilibrium and energetic cost of sensory adaptation

    SciTech Connect

    Lan, G.; Sartori, Pablo; Tu, Y.

    2011-03-24

    Biological sensory systems respond to external signals in short time and adapt to permanent environmental changes over a longer timescale to maintain high sensitivity in widely varying environments. In this work we have shown how all adaptation dynamics are intrinsically non-equilibrium and free energy is dissipated. We show that the dissipated energy is utilized to maintain adaptation accuracy. A universal relation between the energy dissipation and the optimum adaptation accuracy is established by both a general continuum model and a discrete model i n the specific case of the well-known E. coli chemo-sensory adaptation. Our study suggests that cellular level adaptations are fueled by hydrolysis of high energy biomolecules, such as ATP. The relevance of this work lies on linking the functionality of a biological system (sensory adaptation) with a concept rooted in statistical physics (energy dissipation), by a mathematical law. This has been made possible by identifying a general sensory system with a non-equilibrium steady state (a stationary state in which the probability current is not zero, but its divergence is, see figure), and then numerically and analytically solving the Fokker-Planck and Master Equations which describe the sensory adaptive system. The application of our general results to the case of E. Coli has shed light on why this system uses the high energy SAM molecule to perform adaptation, since using the more common ATP would not suffice to obtain the required adaptation accuracy.

  17. Non-equilibrium Thermodynamics of Rayleigh-Taylor Instability

    NASA Astrophysics Data System (ADS)

    Sengupta, Tapan K.; Sengupta, Aditi; Sengupta, Soumyo; Bhole, Ashish; Shruti, K. S.

    2016-04-01

    Here, the fundamental problem of Rayleigh-Taylor instability (RTI) is studied by direct numerical simulation (DNS), where the two air masses at different temperatures, kept apart initially by a non-conducting horizontal interface in a 2D box, are allowed to mix. Upon removal of the partition, mixing is controlled by RTI, apart from mutual mass, momentum, and energy transfer. To accentuate the instability, the top chamber is filled with the heavier (lower temperature) air, which rests atop the chamber containing lighter air. The partition is positioned initially at mid-height of the box. As the fluid dynamical system considered is completely isolated from outside, the DNS results obtained without using Boussinesq approximation will enable one to study non-equilibrium thermodynamics of a finite reservoir undergoing strong irreversible processes. The barrier is removed impulsively, triggering baroclinic instability by non-alignment of density, and pressure gradient by ambient disturbances via the sharp discontinuity at the interface. Adopted DNS method has dispersion relation preservation properties with neutral stability and does not require any external initial perturbations. The complete inhomogeneous problem with non-periodic, no-slip boundary conditions is studied by solving compressible Navier-Stokes equation, without the Boussinesq approximation. This is important as the temperature difference between the two air masses considered is high enough (Δ T = 70 K) to invalidate Boussinesq approximation. We discuss non-equilibrium thermodynamical aspects of RTI with the help of numerical results for density, vorticity, entropy, energy, and enstrophy.

  18. On a variational formulation of the maximum energy dissipation principle for non-equilibrium chemical thermodynamics

    NASA Astrophysics Data System (ADS)

    Moroz, Adam

    2008-05-01

    In this work we revise the applicability of the optimal control and variational approach to the maximum energy dissipation (MED) principle in non-equilibrium thermodynamics. The optimal control analogies for the kinetical and potential parts of thermodynamic Lagrangian (in the form of a sum of the positively defined thermodynamic potential and positively defined dissipative function) have been considered. An interpretation of thermodynamic momenta is discussed with respect to standard optimal control applications, which employ dynamic constraints. Also included is interpretation in terms of the least action principle.

  19. Electron Broadening of Isolated Lines with Stationary Non-Equilibrium Level Populations

    SciTech Connect

    Iglesias, C A

    2005-01-12

    It is shown that a quantum kinetic theory approach to line broadening, extended to stationary non-equilibrium states, yields corrections to the standard electron impact widths of isolated lines that depend on the population of the radiator internal levels. A consistent classical limit from a general quantum treatment of the perturbing electrons also introduces corrections to the isolated line widths. Both effects are essential in preserving detailed-balance relations. Preliminary analysis indicates that these corrections may resolve existing discrepancies between theoretical and experimental widths of isolated lines. An experimental test of the results is proposed.

  20. Non-equilibrium phase transitions in a liquid crystal

    NASA Astrophysics Data System (ADS)

    Dan, K.; Roy, M.; Datta, A.

    2015-09-01

    The present manuscript describes kinetic behaviour of the glass transition and non-equilibrium features of the "Nematic-Isotropic" (N-I) phase transition of a well known liquid crystalline material N-(4-methoxybenzylidene)-4-butylaniline from the effects of heating rate and initial temperature on the transitions, through differential scanning calorimetry (DSC), Fourier transform infrared and fluorescence spectroscopy. Around the vicinity of the glass transition temperature (Tg), while only a change in the baseline of the ΔCp vs T curve is observed for heating rate (β) > 5 K min-1, consistent with a glass transition, a clear peak for β ≤ 5 K min-1 and the rapid reduction in the ΔCp value from the former to the latter rate correspond to an order-disorder transition and a transition from ergodic to non-ergodic behaviour. The ln β vs 1000/T curve for the glass transition shows convex Arrhenius behaviour that can be explained very well by a purely entropic activation barrier [Dan et al., Eur. Phys. Lett. 108, 36007 (2014)]. Fourier transform infrared spectroscopy indicates sudden freezing of the out-of-plane distortion vibrations of the benzene rings around the glass transition temperature and a considerable red shift indicating enhanced coplanarity of the benzene rings and, consequently, enhancement in the molecular ordering compared to room temperature. We further provide a direct experimental evidence of the non-equilibrium nature of the N-I transition through the dependence of this transition temperature (TNI) and associated enthalpy change (ΔH) on the initial temperature (at fixed β-values) for the DSC scans. A plausible qualitative explanation based on Mesquita's extension of Landau-deGennes theory [O. N. de Mesquita, Braz. J. Phys. 28, 257 (1998)] has been put forward. The change in the molecular ordering from nematic to isotropic phase has been investigated through fluorescence anisotropy measurements where the order parameter, quantified by the

  1. Non-equilibrium phase transitions in a liquid crystal.

    PubMed

    Dan, K; Roy, M; Datta, A

    2015-09-07

    The present manuscript describes kinetic behaviour of the glass transition and non-equilibrium features of the "Nematic-Isotropic" (N-I) phase transition of a well known liquid crystalline material N-(4-methoxybenzylidene)-4-butylaniline from the effects of heating rate and initial temperature on the transitions, through differential scanning calorimetry (DSC), Fourier transform infrared and fluorescence spectroscopy. Around the vicinity of the glass transition temperature (Tg), while only a change in the baseline of the ΔCp vs T curve is observed for heating rate (β) > 5 K min(-1), consistent with a glass transition, a clear peak for β ≤ 5 K min(-1) and the rapid reduction in the ΔCp value from the former to the latter rate correspond to an order-disorder transition and a transition from ergodic to non-ergodic behaviour. The ln β vs 1000/T curve for the glass transition shows convex Arrhenius behaviour that can be explained very well by a purely entropic activation barrier [Dan et al., Eur. Phys. Lett. 108, 36007 (2014)]. Fourier transform infrared spectroscopy indicates sudden freezing of the out-of-plane distortion vibrations of the benzene rings around the glass transition temperature and a considerable red shift indicating enhanced coplanarity of the benzene rings and, consequently, enhancement in the molecular ordering compared to room temperature. We further provide a direct experimental evidence of the non-equilibrium nature of the N-I transition through the dependence of this transition temperature (TNI) and associated enthalpy change (ΔH) on the initial temperature (at fixed β-values) for the DSC scans. A plausible qualitative explanation based on Mesquita's extension of Landau-deGennes theory [O. N. de Mesquita, Braz. J. Phys. 28, 257 (1998)] has been put forward. The change in the molecular ordering from nematic to isotropic phase has been investigated through fluorescence anisotropy measurements where the order parameter, quantified by the

  2. Microscopic Simulation and Macroscopic Modeling for Thermal and Chemical Non-Equilibrium

    NASA Technical Reports Server (NTRS)

    Liu, Yen; Panesi, Marco; Vinokur, Marcel; Clarke, Peter

    2013-01-01

    This paper deals with the accurate microscopic simulation and macroscopic modeling of extreme non-equilibrium phenomena, such as encountered during hypersonic entry into a planetary atmosphere. The state-to-state microscopic equations involving internal excitation, de-excitation, dissociation, and recombination of nitrogen molecules due to collisions with nitrogen atoms are solved time-accurately. Strategies to increase the numerical efficiency are discussed. The problem is then modeled using a few macroscopic variables. The model is based on reconstructions of the state distribution function using the maximum entropy principle. The internal energy space is subdivided into multiple groups in order to better describe the non-equilibrium gases. The method of weighted residuals is applied to the microscopic equations to obtain macroscopic moment equations and rate coefficients. The modeling is completely physics-based, and its accuracy depends only on the assumed expression of the state distribution function and the number of groups used. The model makes no assumption at the microscopic level, and all possible collisional and radiative processes are allowed. The model is applicable to both atoms and molecules and their ions. Several limiting cases are presented to show that the model recovers the classical twotemperature models if all states are in one group and the model reduces to the microscopic equations if each group contains only one state. Numerical examples and model validations are carried out for both the uniform and linear distributions. Results show that the original over nine thousand microscopic equations can be reduced to 2 macroscopic equations using 1 to 5 groups with excellent agreement. The computer time is decreased from 18 hours to less than 1 second.

  3. Non-equilibrium dissipative supramolecular materials with a tunable lifetime

    PubMed Central

    Tena-Solsona, Marta; Rieß, Benedikt; Grötsch, Raphael K.; Löhrer, Franziska C.; Wanzke, Caren; Käsdorf, Benjamin; Bausch, Andreas R.; Müller-Buschbaum, Peter; Lieleg, Oliver; Boekhoven, Job

    2017-01-01

    Many biological materials exist in non-equilibrium states driven by the irreversible consumption of high-energy molecules like ATP or GTP. These energy-dissipating structures are governed by kinetics and are thus endowed with unique properties including spatiotemporal control over their presence. Here we show man-made equivalents of materials driven by the consumption of high-energy molecules and explore their unique properties. A chemical reaction network converts dicarboxylates into metastable anhydrides driven by the irreversible consumption of carbodiimide fuels. The anhydrides hydrolyse rapidly to the original dicarboxylates and are designed to assemble into hydrophobic colloids, hydrogels or inks. The spatiotemporal control over the formation and degradation of materials allows for the development of colloids that release hydrophobic contents in a predictable fashion, temporary self-erasing inks and transient hydrogels. Moreover, we show that each material can be re-used for several cycles. PMID:28719591

  4. Non-Equilibrium Hyperbolic Transport in Transcriptional Regulation

    PubMed Central

    Hernández-Lemus, Enrique; Correa-Rodríguez, María D.

    2011-01-01

    In this work we studied memory and irreversible transport phenomena in a non-equilibrium thermodynamical model for genomic transcriptional regulation. Transcriptional regulation possess an extremely complex phenomenology, and it is, of course, of foremost importance in organismal cell development and in the pathogenesis of complex diseases. A better understanding of the way in which these processes occur is mandatory to optimize the construction of gene regulatory networks, but also to connect these networks with multi-scale phenomena (e.g. metabolism, signalling pathways, etc.) under an integrative Systems Biology-like vision. In this paper we analyzed three simple mechanisms of genetic stimulation: an instant pulse, a periodic biochemical signal and a saturation process with sigmoidal kinetics and from these we derived the system's thermodynamical response, in the form of, for example, anomalous transcriptional bursts. PMID:21754990

  5. Non-equilibrium dissipative supramolecular materials with a tunable lifetime

    NASA Astrophysics Data System (ADS)

    Tena-Solsona, Marta; Rieß, Benedikt; Grötsch, Raphael K.; Löhrer, Franziska C.; Wanzke, Caren; Käsdorf, Benjamin; Bausch, Andreas R.; Müller-Buschbaum, Peter; Lieleg, Oliver; Boekhoven, Job

    2017-07-01

    Many biological materials exist in non-equilibrium states driven by the irreversible consumption of high-energy molecules like ATP or GTP. These energy-dissipating structures are governed by kinetics and are thus endowed with unique properties including spatiotemporal control over their presence. Here we show man-made equivalents of materials driven by the consumption of high-energy molecules and explore their unique properties. A chemical reaction network converts dicarboxylates into metastable anhydrides driven by the irreversible consumption of carbodiimide fuels. The anhydrides hydrolyse rapidly to the original dicarboxylates and are designed to assemble into hydrophobic colloids, hydrogels or inks. The spatiotemporal control over the formation and degradation of materials allows for the development of colloids that release hydrophobic contents in a predictable fashion, temporary self-erasing inks and transient hydrogels. Moreover, we show that each material can be re-used for several cycles.

  6. Relativistic hydrodynamics and non-equilibrium steady states

    NASA Astrophysics Data System (ADS)

    Spillane, Michael; Herzog, Christopher P.

    2016-10-01

    We review recent interest in the relativistic Riemann problem as a method for generating a non-equilibrium steady state. In the version of the problem under consideration, the initial conditions consist of a planar interface between two halves of a system held at different temperatures in a hydrodynamic regime. The new double shock solutions are in contrast with older solutions that involve one shock and one rarefaction wave. We use numerical simulations to show that the older solutions are preferred. Briefly we discuss the effects of a conserved charge. Finally, we discuss deforming the relativistic equations with a nonlinear term and how that deformation affects the temperature and velocity in the region connecting the asymptotic fluids.

  7. Axisymmetric turbulent wakes with new non-equilibrium similarity scalings

    NASA Astrophysics Data System (ADS)

    Vassilicos, John Christos; Nedic, Jovan; Ganapathisubramani, Bharathram; TMFC, Imperial College London Team

    2013-11-01

    The recently discovered non-equilibrium turbulence dissipation law (Seoud & Vassilicos PoF 19, 2007, Mazellier & Vassilicos PoF 22, 2010, Valente & Vassilicos JFM 687, 2011, Valente & Vassilicos PRL 108, 2012, Gomes-Fernandes et al. JFM 711, 2012) implies the existence of axisymmetric turbulent wake regions where the mean flow velocity deficit decays as the inverse of the distance from the wake-generating body and the wake width grows as the square root of that distance. This behaviour is different from any documented boundary-free turbulent shear flow to date. Its existence is confirmed in wind tunnel experiments of wakes generated by plates with irregular fractal-like edges placed normal to an incoming free stream. EPSRC.

  8. Non-equilibrium Neutrino in the Early Universe Plasma

    SciTech Connect

    Kirilova, D.

    2009-04-26

    We discuss the evolution of cosmic neutrinos, participating in neutrino oscillations and interacting with the fermions of the hot plasma during pre-BBN and BBN epoch. The neutrino evolution and the neutrino oscillations effects depend on the type of oscillations: oscillation channels, the degree of equilibrium of oscillating neutrinos and on the plasma characteristics. Neutrino spectrum distortion by neutrino oscillations in medium is discussed in detail. Non-equilibrium decays and their effect on electron neutrino spectrum distortion and nucleons kinetics during pre-BBN epoch are briefly discussed. BBN model with such decays and active-inert neutrino oscillations may resolve the tension between BBN and LSS preferred numbers of neutrino types. Cosmological constraints on neutrino characteristics are presented.

  9. Dynamical Systems Based Non Equilibrium Statistical Mechanics for Markov Chains

    NASA Astrophysics Data System (ADS)

    Prevost, Mireille

    We introduce an abstract framework concerning non-equilibrium statistical mechanics in the specific context of Markov chains. This framework encompasses both the Evans-Searles and the Gallavotti-Cohen fluctuation theorems. To support and expand on these concepts, several results are proven, among which a central limit theorem and a large deviation principle. The interest for Markov chains is twofold. First, they model a great variety of physical systems. Secondly, their simplicity allows for an easy introduction to an otherwise complicated field encompassing the statistical mechanics of Anosov and Axiom A diffeomorphisms. We give two examples relating the present framework to physical cases modelled by Markov chains. One of these concerns chemical reactions and links key concepts from the framework to their well known physical counterpart.

  10. Non-equilibrium Thermodynamics of the Longitudinal Spin Seebeck Effect

    NASA Astrophysics Data System (ADS)

    Basso, Vittorio; Ferraro, Elena; Sola, Alessandro; Magni, Alessandro; Kuepferling, Michaela; Pasquale, Massimo

    In this paper we employ non equilibrium thermodynamics of fluxes and forces to describe magnetization and heat transport. By the theory we are able to identify the thermodynamic driving force of the magnetization current as the gradient of the effective field ▿H*. This definition permits to define the spin Seebeck coefficient ɛM which relates ▿H* and the temperature gradient ▿T. By applying the theory to the geometry of the longitudinal spin Seebeck effect we are able to obtain the optimal conditions for generating large magnetization currents. Furthermore, by using the results of recent experiments, we obtain an order of magnitude for the value of ɛM ∼ 10-2 TK-1 for yttrium iron garnet (Y3Fe5O12).

  11. Complementary relations in non-equilibrium stochastic processes

    NASA Astrophysics Data System (ADS)

    Kim, Eun-jin; Nicholson, S. B.

    2015-08-01

    We present novel complementary relations in non-equilibrium stochastic processes. Specifically, by utilising path integral formulation, we derive statistical measures (entropy, information, and work) and investigate their dependence on variables (x, v), reference frames, and time. In particular, we show that the equilibrium state maximises the simultaneous information quantified by the product of the Fisher information based on x and v while minimising the simultaneous disorder/uncertainty quantified by the sum of the entropy based on x and v as well as by the product of the variances of the PDFs of x and v. We also elucidate the difference between Eulerian and Lagrangian entropy. Our theory naturally leads to Hamilton-Jacobi relation for forced-dissipative systems.

  12. Thermal Non-equilibrium Consistent with Widespread Cooling

    NASA Technical Reports Server (NTRS)

    Winebarger, A.; Lionello, R.; Mikic, Z.; Linker, J.; Mok, Y.

    2014-01-01

    Time correlation analysis has been used to show widespread cooling in the solar corona; this cooling has been interpreted as a result of impulsive (nanoflare) heating. In this work, we investigate wide-spread cooling using a 3D model for a solar active region which has been heated with highly stratified heating. This type of heating drives thermal non-equilibrium solutions, meaning that though the heating is effectively steady, the density and temperature in the solution are not. We simulate the expected observations in narrowband EUV images and apply the time correlation analysis. We find that the results of this analysis are qualitatively similar to the observed data. We discuss additional diagnostics that may be applied to differentiate between these two heating scenarios.

  13. Biological Implications of Dynamical Phases in Non-equilibrium Networks

    NASA Astrophysics Data System (ADS)

    Murugan, Arvind; Vaikuntanathan, Suriyanarayanan

    2016-03-01

    Biology achieves novel functions like error correction, ultra-sensitivity and accurate concentration measurement at the expense of free energy through Maxwell Demon-like mechanisms. The design principles and free energy trade-offs have been studied for a variety of such mechanisms. In this review, we emphasize a perspective based on dynamical phases that can explain commonalities shared by these mechanisms. Dynamical phases are defined by typical trajectories executed by non-equilibrium systems in the space of internal states. We find that coexistence of dynamical phases can have dramatic consequences for function vs free energy cost trade-offs. Dynamical phases can also provide an intuitive picture of the design principles behind such biological Maxwell Demons.

  14. Plasma diagnostics of non-equilibrium atmospheric plasma jets

    NASA Astrophysics Data System (ADS)

    Shashurin, Alexey; Scott, David; Keidar, Michael; Shneider, Mikhail

    2014-10-01

    Intensive development and biomedical application of non-equilibrium atmospheric plasma jet (NEAPJ) facilitates rapid growth of the plasma medicine field. The NEAPJ facility utilized at the George Washington University (GWU) demonstrated efficacy for treatment of various cancer types (lung, bladder, breast, head, neck, brain and skin). In this work we review recent advances of the research conducted at GWU concerned with the development of NEAPJ diagnostics including Rayleigh Microwave Scattering setup, method of streamer scattering on DC potential, Rogowski coils, ICCD camera and optical emission spectroscopy. These tools allow conducting temporally-resolved measurements of plasma density, electrical potential, charge and size of the streamer head, electrical currents flowing though the jet, ionization front propagation speed etc. Transient dynamics of plasma and discharge parameters will be considered and physical processes involved in the discharge will be analyzed including streamer breakdown, electrical coupling of the streamer tip with discharge electrodes, factors determining NEAPJ length, cross-sectional shape and propagation path etc.

  15. Non-equilibrium entropy and dynamics in a system with long-range interactions

    NASA Astrophysics Data System (ADS)

    Rocha Filho, T. M.

    2016-05-01

    We extend the core-halo approach of Levin et al (2014 Phys. Rep. 535, 1) for the violent relaxation of long-range interacting system with a waterbag initial condition, in the case of a widely studied Hamiltonian mean field model. The Gibbs entropy maximization principle is considered with the constraints of energy conservation and of coarse-grained Casimir invariants of the Vlasov equation. The core-halo distribution function depends only on the one-particle mean-field energy, as is expected from the Jeans theorem, and depends on a set of parameters which in our approach is completely determined without having to solve an envelope equation for the contour of the initial state, as required in the original approach. We also show that a different ansatz can be used for the core-halo distribution with similar results. This work also reveals a link between a parametric resonance causing the non-equilibrium phase transition in the model, a dynamical property, and a discontinuity of the (non-equilibrium) entropy of the system.

  16. Modeling Inflation Using a Non-Equilibrium Equation of Exchange

    NASA Technical Reports Server (NTRS)

    Chamberlain, Robert G.

    2013-01-01

    Inflation is a change in the prices of goods that takes place without changes in the actual values of those goods. The Equation of Exchange, formulated clearly in a seminal paper by Irving Fisher in 1911, establishes an equilibrium relationship between the price index P (also known as "inflation"), the economy's aggregate output Q (also known as "the real gross domestic product"), the amount of money available for spending M (also known as "the money supply"), and the rate at which money is reused V (also known as "the velocity of circulation of money"). This paper offers first a qualitative discussion of what can cause these factors to change and how those causes might be controlled, then develops a quantitative model of inflation based on a non-equilibrium version of the Equation of Exchange. Causal relationships are different from equations in that the effects of changes in the causal variables take time to play out-often significant amounts of time. In the model described here, wages track prices, but only after a distributed lag. Prices change whenever the money supply, aggregate output, or the velocity of circulation of money change, but only after a distributed lag. Similarly, the money supply depends on the supplies of domestic and foreign money, which depend on the monetary base and a variety of foreign transactions, respectively. The spreading of delays mitigates the shocks of sudden changes to important inputs, but the most important aspect of this model is that delays, which often have dramatic consequences in dynamic systems, are explicitly incorporated.macroeconomics, inflation, equation of exchange, non-equilibrium, Athena Project

  17. Non-equilibrium dynamics of glass-forming liquid mixtures.

    PubMed

    Sánchez-Díaz, Luis Enrique; Lázaro-Lázaro, Edilio; Olais-Govea, José Manuel; Medina-Noyola, Magdaleno

    2014-06-21

    The non-equilibrium self-consistent generalized Langevin equation theory of irreversible processes in glass-forming liquids [P. Ramírez-González and M. Medina-Noyola, Phys. Rev. E 82, 061503 (2010)] is extended here to multi-component systems. The resulting theory describes the statistical properties of the instantaneous local particle concentration profiles nα(r, t) of species α in terms of the coupled time-evolution equations for the mean value n̄α(r, t) and for the covariance σ(αβ)(r, r'; t) ≡ δn(α)(r, t)δn(β)(r', t) of the fluctuations δn(α)(r, t) = n(α)(r, t) - n̄α(r, t). As in the monocomponent case, these two coarse-grained equations involve a local mobility function bα(r, t) for each species, written in terms of the memory function of the two-time correlation function C(αβ)(r, r'; t, t') ≡ δn(α)(r, t)δn(β)(r', t'). If the system is constrained to remain spatially uniform and subjected to a non-equilibrium preparation protocol described by a given temperature and composition change program T(t) and n̄α(r, t), these equations predict the irreversible structural relaxation of the partial static structure factors Sαβ(k; t) and of the (collective and self) intermediate scattering functions Fαβ(k, τ; t) and F(αβ)(S)(k, τ; t). We illustrate the applicability of the resulting theory with two examples involving simple model mixtures subjected to an instantaneous temperature quench: an electroneutral binary mixture of equally sized and oppositely charged hard-spheres, and a binary mixture of soft-spheres of moderate size-asymmetry.

  18. Non-equilibrium dynamics of glass-forming liquid mixtures

    NASA Astrophysics Data System (ADS)

    Sánchez-Díaz, Luis Enrique; Lázaro-Lázaro, Edilio; Olais-Govea, José Manuel; Medina-Noyola, Magdaleno

    2014-06-01

    The non-equilibrium self-consistent generalized Langevin equation theory of irreversible processes in glass-forming liquids [P. Ramírez-González and M. Medina-Noyola, Phys. Rev. E 82, 061503 (2010)] is extended here to multi-component systems. The resulting theory describes the statistical properties of the instantaneous local particle concentration profiles nα(r, t) of species α in terms of the coupled time-evolution equations for the mean value overline{n}_α ({r},t) and for the covariance σ _{α β }({r},{r}^' };t)equiv overline{δ n_α ({r},t)δ n_β ({r}^' },t)} of the fluctuations δ n_α ({r},t) = n_α ({r},t)- overline{n}_α ({r},t). As in the monocomponent case, these two coarse-grained equations involve a local mobility function bα(r, t) for each species, written in terms of the memory function of the two-time correlation function C_{α β }({r},{r}^' };t,t^' }) equiv overline{δ n_α ({r},t)δ n_β ({r}^' },t^' })}. If the system is constrained to remain spatially uniform and subjected to a non-equilibrium preparation protocol described by a given temperature and composition change program T(t) and overline{n}_α (t), these equations predict the irreversible structural relaxation of the partial static structure factors Sαβ(k; t) and of the (collective and self) intermediate scattering functions Fαβ(k, τ; t) and F^S_{α β }(k,τ ;t). We illustrate the applicability of the resulting theory with two examples involving simple model mixtures subjected to an instantaneous temperature quench: an electroneutral binary mixture of equally sized and oppositely charged hard-spheres, and a binary mixture of soft-spheres of moderate size-asymmetry.

  19. Upscaling of Compositional Flow Simulation based on a non-Equilibrium Formulation

    NASA Astrophysics Data System (ADS)

    Salehi, A.; Voskov, D.; Tchelepi, H. A.

    2012-12-01

    Modeling multiphase flow of large number of components in natural porous media is a challenging problem of strong interest across many disciplines. Even with the most advanced computational methods and computer platforms, compositional simulation using the fine-scale (so-called geocellular) model is often too expensive; as a result, upscaling methods for compositional flows are essential. We describe a consistent representation of the coarse-scale equations, and we introduce upscaled flow functions to account for the sub-scale variations in both the absolute and relative permeability, as well as, compressibility effects. Upscaling of the thermodynamic phase behavior is the main focus of this work. We assume instantaneous phase equilibrium at the fine scale, and we derive coarse-scale equations, in which the phase behavior is represented in a non-equilibrium form. Viscous fingering, gravity override, and channeling at the sub-grid scale are possible reasons for this non-equilibrium behavior. Coarse-scale thermodynamic functions are introduced to quantify the difference in chemical potential of each component among the different phases and to capture the deviation of coarse blocks from equilibrium. These upscaled functions transform the two-phase region of the fine-scale, formed by equilibrium tie-lines, to a modified region with tilted tie-lines. We quantify the effect of the degree of heterogeneity variance and heterogeneity patterns on the modified non-equilibrium phase space in the upscaled representation. We also analyze the interplay of phase behavior and numerical dispersion at the coarse-scale, and we demonstrate how the averaging of sub-scale heterogeneities and the use of larger grid blocks can alter the solution. The accuracy and efficiency of proposed methodology is tested for various challenging gas injection problems, and we show that the approach accurately reproduces the averaged fine-scale solutions.

  20. Asymptotic analysis of discrete schemes for non-equilibrium radiation diffusion

    SciTech Connect

    Cui, Xia Yuan, Guang-wei; Shen, Zhi-jun

    2016-05-15

    Motivated by providing well-behaved fully discrete schemes in practice, this paper extends the asymptotic analysis on time integration methods for non-equilibrium radiation diffusion in [2] to space discretizations. Therein studies were carried out on a two-temperature model with Larsen's flux-limited diffusion operator, both the implicitly balanced (IB) and linearly implicit (LI) methods were shown asymptotic-preserving. In this paper, we focus on asymptotic analysis for space discrete schemes in dimensions one and two. First, in construction of the schemes, in contrast to traditional first-order approximations, asymmetric second-order accurate spatial approximations are devised for flux-limiters on boundary, and discrete schemes with second-order accuracy on global spatial domain are acquired consequently. Then by employing formal asymptotic analysis, the first-order asymptotic-preserving property for these schemes and furthermore for the fully discrete schemes is shown. Finally, with the help of manufactured solutions, numerical tests are performed, which demonstrate quantitatively the fully discrete schemes with IB time evolution indeed have the accuracy and asymptotic convergence as theory predicts, hence are well qualified for both non-equilibrium and equilibrium radiation diffusion. - Highlights: • Provide AP fully discrete schemes for non-equilibrium radiation diffusion. • Propose second order accurate schemes by asymmetric approach for boundary flux-limiter. • Show first order AP property of spatially and fully discrete schemes with IB evolution. • Devise subtle artificial solutions; verify accuracy and AP property quantitatively. • Ideas can be generalized to 3-dimensional problems and higher order implicit schemes.

  1. Dissociating conflict adaptation from feature integration: a multiple regression approach.

    PubMed

    Notebaert, Wim; Verguts, Tom

    2007-10-01

    Congruency effects are typically smaller after incongruent than after congruent trials. One explanation is in terms of higher levels of cognitive control after detection of conflict (conflict adaptation; e.g., M. M. Botvinick, T. S. Braver, D. M. Barch, C. S. Carter, & J. D. Cohen, 2001). An alternative explanation for these results is based on feature repetition and/or integration effects (e.g., B. Hommel, R. W. Proctor, & K.-P. Vu, 2004; U. Mayr, E. Awh, & P. Laurey, 2003). Previous attempts to dissociate feature integration from conflict adaptation focused on a particular subset of the data in which feature transitions were held constant (J. G. Kerns et al., 2004) or in which congruency transitions were held constant (C. Akcay & E. Hazeltine, in press), but this has a number of disadvantages. In this article, the authors present a multiple regression solution for this problem and discuss its possibilities and pitfalls.

  2. Improving the Efficiency of Non-equilibrium Sampling in the Aqueous Environment via Implicit-Solvent Simulations.

    PubMed

    Liu, Hui; Chen, Fu; Sun, Huiyong; Li, Dan; Hou, Tingjun

    2017-04-11

    By means of estimators based on non-equilibrium work, equilibrium free energy differences or potentials of mean force (PMFs) of a system of interest can be computed from biased molecular dynamics (MD) simulations. The approach, however, is often plagued by slow conformational sampling and poor convergence, especially when the solvent effects are taken into account. Here, as a possible way to alleviate the problem, several widely used implicit-solvent models, which are derived from the analytic generalized Born (GB) equation and implemented in the AMBER suite of programs, were employed in free energy calculations based on non-equilibrium work and evaluated for their abilities to emulate explicit water. As a test case, pulling MD simulations were carried out on an alanine polypeptide with different solvent models and protocols, followed by comparisons of the reconstructed PMF profiles along the unfolding coordinate. The results show that when employing the non-equilibrium work method, sampling with an implicit-solvent model is several times faster and, more importantly, converges more rapidly than that with explicit water due to reduction of dissipation. Among the assessed GB models, the Neck variants outperform the OBC and HCT variants in terms of accuracy, whereas their computational costs are comparable. In addition, for the best-performing models, the impact of the solvent-accessible surface area (SASA) dependent nonpolar solvation term was also examined. The present study highlights the advantages of implicit-solvent models for non-equilibrium sampling.

  3. Vibrational non-equilibrium in the hydrogen-oxygen reaction. Comparison with experiment

    NASA Astrophysics Data System (ADS)

    Skrebkov, Oleg V.

    2015-03-01

    A theoretical model is proposed for the chemical and vibrational kinetics of hydrogen oxidation based on consistent accounting of the vibrational non-equilibrium of the HO2 radical that forms as a result of the bimolecular recombination H+O2 → HO2. In the proposed model, the chain branching H+O2 = O+OH and inhibiting H+O2+M = HO2+M formal reactions are treated (in the terms of elementary processes) as a single multi-channel process of forming, intramolecular energy redistribution between modes, relaxation, and unimolecular decay of the comparatively long-lived vibrationally excited HO2 radical, which is able to react and exchange energy with the other components of the mixture. The model takes into account the vibrational non-equilibrium of the starting (primary) H2 and O2 molecules, as well as the most important molecular intermediates HO2, OH, O2(1Δ), and the main reaction product H2O. It is shown that the hydrogen-oxygen reaction proceeds in the absence of vibrational equilibrium, and the vibrationally excited HO2(v) radical acts as a key intermediate in a fundamentally important chain branching process and in the generation of electronically excited species O2(1Δ), O(1D), and OH(2Σ+). The calculated results are compared with the shock tube experimental data for strongly diluted H2-O2 mixtures at 1000 < T < 2500 K, 0.5 < p < 4 atm. It is demonstrated that this approach is promising from the standpoint of reconciling the predictions of the theoretical model with experimental data obtained by different authors for various compositions and conditions using different methods. For T < 1500 K, the nature of the hydrogen-oxygen reaction is especially non-equilibrium, and the vibrational non-equilibrium of the HO2 radical is the essence of this process. The quantitative estimation of the vibrational relaxation characteristic time of the HO2 radical in its collisions with H2 molecules has been obtained as a result of the comparison of different experimental data on

  4. Non-equilibrium dynamics of artificial quantum matter

    NASA Astrophysics Data System (ADS)

    Babadi, Mehrtash

    The rapid progress of the field of ultracold atoms during the past two decades has set new milestones in our control over matter. By cooling dilute atomic gases and molecules to nano-Kelvin temperatures, novel quantum mechanical states of matter can be realized and studied on a table-top experimental setup while bulk matter can be tailored to faithfully simulate abstract theoretical models. Two of such models which have witnessed significant experimental and theoretical attention are (1) the two-component Fermi gas with resonant s-wave interactions, and (2) the single-component Fermi gas with dipole-dipole interactions. This thesis is devoted to studying the non-equilibrium collective dynamics of these systems using the general framework of quantum kinetic theory. We present a concise review of the utilized mathematical methods in the first two chapters, including the Schwinger-Keldysh formalism of non-equilibrium quantum fields, two-particle irreducible (2PI) effective actions and the framework of quantum kinetic theory. We study the collective dynamics of the dipolar Fermi gas in a quasi-two-dimensional optical trap in chapter 3 and provide a detailed account of its dynamical crossover from the collisionless to the hydrodynamical regime. Chapter 4 is devoted to studying the dynamics of the attractive Fermi gas in the normal phase. Starting from the self-consistent T-matrix (pairing fluctuation) approximation, we systematically derive a set of quantum kinetic equations and show that they provide a globally valid description of the dynamics of the attractive Fermi gas, ranging from the weak-coupling Fermi liquid phase to the intermediate non-Fermi liquid pairing pseudogap regime and finally the strong-coupling Bose liquid phase. The shortcomings of the self-consistent T-matrix approximation in two spatial dimensions are discussed along with a proposal to overcome its unphysical behaviors. The developed kinetic formalism is finally utilized to reproduce and

  5. Non-equilibrium Aspects of Quantum Integrable Systems

    NASA Astrophysics Data System (ADS)

    Andrei, Natan

    The study of non-equilibrium dynamics of interacting many body systems is currently one of the main challenges of modern condensed matter physics, driven by the spectacular progress in the ability to create experimental systems - trapped cold atomic gases are a prime example - that can be isolated from their environment and be highly controlled. Many old and new questions can be addressed: thermalization of isolated systems, nonequilibrium steady states, the interplay between non equilibrium currents and strong correlations, quantum phase transitions in time, universality among others. In this talk I will describe nonequilibrium quench dynamics in integrable quantum systems. I'll discuss the time evolution of the Lieb-Liniger system, a gas of interacting bosons moving on the continuous infinite line and interacting via a short range potential. Considering a finite number of bosons on the line we find that for any value of repulsive coupling the system asymptotes towards a strongly repulsive gas for any initial state, while for an attractive coupling, the system forms a maximal bound state that dominates at longer times. In the thermodynamic limit -with the number of bosons and the system size sent to infinity at a constant density and the long time limit taken subsequently- I'll show that the density and density-density correlation functions for strong but finite positive coupling are described by GGE for translationally invariant initial states with short range correlations. As examples I'll discuss quenches from a Mott insulator initial state or a Newton's Cradle. Then I will show that if the initial state is strongly non translational invariant, e.g. a domain wall configuration, the system does not equilibrate but evolves into a nonequilibrium steady state (NESS). A related NESS arises when the quench consists of coupling a quantum dot to two leads held at different chemical potential, leading in the long time limit to a steady state current. Time permitting I

  6. Observing Organic Molecules in Interstellar Gases: Non Equilibrium Excitation.

    NASA Astrophysics Data System (ADS)

    Wiesenfeld, Laurent; Faure, Alexandre; Remijan, Anthony; Szalewicz, Krzysztof

    2014-06-01

    In order to observe quantitatively organic molecules in interstellar gas, it is necessary to understand the relative importance of photonic and collisional excitations. In order to do so, collisional excitation transfer rates have to be computed. We undertook several such studies, in particular for H_2CO and HCOOCH_3. Both species are observed in many astrochemical environments, including star-forming regions. We found that those two molecules behave in their low-lying rotational levels in an opposite way. For cis methyl-formate, a non-equilibrium radiative transfer treatment of rotational lines is performed, using a new set of theoretical collisional rate coefficients. These coefficients have been computed in the temperature range 5 to 30 K by combining coupled-channel scattering calculations with a high accuracy potential energy surface for HCOOCH_3 -- He. The results are compared to observations toward the Sagittarius B2(N) molecular cloud. A total of 2080 low-lying transitions of methyl formate, with upper levels below 25 K, were treated. These lines are found to probe a cold (30 K), moderately dense (n ˜ 104 cm-3) interstellar gas. In addition, our calculations indicate that all detected emission lines with a frequency below 30 GHz are collisionally pumped weak masers amplifying the background of Sgr B2(N). This result demonstrates the generality of the inversion mechanism for the low-lying transitions of methyl formate. For formaldehyde, we performed a similar non-equilibrium treatment, with H_2 as the collisional partner, thanks to the accurate H_2CO - H_2 potential energy surface . We found very different energy transfer rates for collisions with para-H_2 (J=0) and ortho-H_2 (J=1). The well-known absorption against the cosmological background of the 111→ 101 line is shown to depend critically on the difference of behaviour between para and ortho-H_2, for a wide range of H_2 density. We thank the CNRS-PCMI French national program for continuous support

  7. Multi-Scale Microstructural Thermoelectric Materials: Transport Behavior, Non-Equilibrium Preparation, and Applications.

    PubMed

    Su, Xianli; Wei, Ping; Li, Han; Liu, Wei; Yan, Yonggao; Li, Peng; Su, Chuqi; Xie, Changjun; Zhao, Wenyu; Zhai, Pengcheng; Zhang, Qingjie; Tang, Xinfeng; Uher, Ctirad

    2017-01-23

    Considering only about one third of the world's energy consumption is effectively utilized for functional uses, and the remaining is dissipated as waste heat, thermoelectric (TE) materials, which offer a direct and clean thermal-to-electric conversion pathway, have generated a tremendous worldwide interest. The last two decades have witnessed a remarkable development in TE materials. This Review summarizes the efforts devoted to the study of non-equilibrium synthesis of TE materials with multi-scale structures, their transport behavior, and areas of applications. Studies that work towards the ultimate goal of developing highly efficient TE materials possessing multi-scale architectures are highlighted, encompassing the optimization of TE performance via engineering the structures with different dimensional aspects spanning from the atomic and molecular scales, to nanometer sizes, and to the mesoscale. In consideration of the practical applications of high-performance TE materials, the non-equilibrium approaches offer a fast and controllable fabrication of multi-scale microstructures, and their scale up to industrial-size manufacturing is emphasized here. Finally, the design of two integrated power generating TE systems are described-a solar thermoelectric-photovoltaic hybrid system and a vehicle waste heat harvesting system-that represent perhaps the most important applications of thermoelectricity in the energy conversion area.

  8. New directions in fluid dynamics: non-equilibrium aerodynamic and microsystem flows.

    PubMed

    Reese, Jason M; Gallis, Michael A; Lockerby, Duncan A

    2003-12-15

    Fluid flows that do not have local equilibrium are characteristic of some of the new frontiers in engineering and technology, for example, high-speed high-altitude aerodynamics and the development of micrometre-sized fluid pumps, turbines and other devices. However, this area of fluid dynamics is poorly understood from both the experimental and simulation perspectives, which hampers the progress of these technologies. This paper reviews some of the recent developments in experimental techniques and modelling methods for non-equilibrium gas flows, examining their advantages and drawbacks. We also present new results from our computational investigations into both hypersonic and microsystem flows using two distinct numerical methodologies: the direct simulation Monte Carlo method and extended hydrodynamics. While the direct simulation approach produces excellent results and is used widely, extended hydrodynamics is not as well developed but is a promising candidate for future more complex simulations. Finally, we discuss some of the other situations where these simulation methods could be usefully applied, and look to the future of numerical tools for non-equilibrium flows.

  9. A tightly coupled non-equilibrium model for inductively coupled radio-frequency plasmas

    SciTech Connect

    Munafò, A. Alfuhaid, S. A. Panesi, M.; Cambier, J.-L.

    2015-10-07

    The objective of the present work is the development of a tightly coupled magneto-hydrodynamic model for inductively coupled radio-frequency plasmas. Non Local Thermodynamic Equilibrium (NLTE) effects are described based on a hybrid State-to-State approach. A multi-temperature formulation is used to account for thermal non-equilibrium between translation of heavy-particles and vibration of molecules. Excited electronic states of atoms are instead treated as separate pseudo-species, allowing for non-Boltzmann distributions of their populations. Free-electrons are assumed Maxwellian at their own temperature. The governing equations for the electro-magnetic field and the gas properties (e.g., chemical composition and temperatures) are written as a coupled system of time-dependent conservation laws. Steady-state solutions are obtained by means of an implicit Finite Volume method. The results obtained in both LTE and NLTE conditions over a broad spectrum of operating conditions demonstrate the robustness of the proposed coupled numerical method. The analysis of chemical composition and temperature distributions along the torch radius shows that: (i) the use of the LTE assumption may lead to an inaccurate prediction of the thermo-chemical state of the gas, and (ii) non-equilibrium phenomena play a significant role close the walls, due to the combined effects of Ohmic heating and macroscopic gradients.

  10. Effects of non-equilibrium plasma in the treatment of ligature-induced peri-implantitis.

    PubMed

    Shi, Qi; Song, Ke; Zhou, Xincai; Xiong, Zilan; Du, Tianfeng; Lu, Xinpei; Cao, Yingguang

    2015-05-01

    To evaluate the effects of non-equilibrium plasma in the treatment of ligature-induced peri-implantitis in beagle dogs. Six beagles received 12 implants installed in the position of the fourth mandibular premolars. Ligature-induced peri-implantitis was initiated at 3 months post-implantation. When approximately 40% of the supporting bone was lost, the ligatures were removed. The implants were subjected to the muco-periosteal scaling and chlorhexidine irrigation with or without plasma irrigation. Three months later, clinical, radiographic and microbiological analyses were performed. Block biopsies were prepared for micro-CT and histomorphometric analysis. The primary outcome was the difference in bone healing of peri-implant sites, and the secondary outcomes included changes in clinical parameters (SBI, PD) and bacterial detection. At baseline, no significant differences were observed between the two groups. At 3 months post-treatment, the plasma group showed a significantly higher bone level than the control group (p < 0.05), a significantly decreased detection of bacteria (Porphyromonas gingivalis and Tannerella forsythia) (p < 0.05), and a significant improvement in clinical examination (p < 0.05). Within the limits of this study, non-equilibrium plasma treatment as an adjunct to the conventional therapy is a feasible approach for the treatment of peri-implantitis. © 2015 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  11. Non-equilibrium colloidal assembly pathways via synergistic dipolar, depletion, and hydrodynamic interactions

    NASA Astrophysics Data System (ADS)

    Coughlan, Anna; Bevan, Michael

    The ability to assemble nano- and micro- colloidal particles into ordered materials and controllable devices provides the basis for emerging technologies. However, current capabilities for manipulating colloidal assembly are limited by the degree of order, time to generate/reconfigure structures, and scalability to large areas. These limitations are due to problems with designing, controlling, and optimizing the thermodynamics and kinetics of colloidal assembly. Our approach is to provide viable non-equilibrium pathways for rapid assembly of defect free colloidal crystals using combinations of magnetic field and depletion mediated assembly. Results include video microscopy experiments and Stokesian Dynamic computer simulations of superparamagnetic colloidal particles experiencing depletion attraction in time varying magnetic fields. Findings show multi-body hydrodynamic interactions and magnetic dipole relaxation mechanisms are essential to capture assembly and annealing of attractive colloidal crystals. With the ability to measure, model and tune colloidal interactions and dynamics, we demonstrate the use of time varying fields to manipulate non-equilibrium pathways for the assembly, disassembly, and repair of colloidal microstructures.

  12. Path-space variational inference for non-equilibrium coarse-grained systems

    SciTech Connect

    Harmandaris, Vagelis; Katsoulakis, Markos; Plecháč, Petr

    2016-06-01

    In this paper we discuss information-theoretic tools for obtaining optimized coarse-grained molecular models for both equilibrium and non-equilibrium molecular simulations. The latter are ubiquitous in physicochemical and biological applications, where they are typically associated with coupling mechanisms, multi-physics and/or boundary conditions. In general the non-equilibrium steady states are not known explicitly as they do not necessarily have a Gibbs structure. The presented approach can compare microscopic behavior of molecular systems to parametric and non-parametric coarse-grained models using the relative entropy between distributions on the path space and setting up a corresponding path-space variational inference problem. The methods can become entirely data-driven when the microscopic dynamics are replaced with corresponding correlated data in the form of time series. Furthermore, we present connections and generalizations of force matching methods in coarse-graining with path-space information methods. We demonstrate the enhanced transferability of information-based parameterizations to different observables, at a specific thermodynamic point, due to information inequalities. We discuss methodological connections between information-based coarse-graining of molecular systems and variational inference methods primarily developed in the machine learning community. However, we note that the work presented here addresses variational inference for correlated time series due to the focus on dynamics. The applicability of the proposed methods is demonstrated on high-dimensional stochastic processes given by overdamped and driven Langevin dynamics of interacting particles.

  13. Non-equilibrium Simulation of CO­2-hydrate Phase Transitions from Mixtures of CO2 and N2 Gases

    NASA Astrophysics Data System (ADS)

    Qorbani Nashaqi, K.

    2015-12-01

    Storage of CO2 in aquifers is one of several options for reducing the emissions of CO2 to the atmosphere. Generally this option requires sealing integrity through layers of clay or shale. Many reservoirs have regions of temperature and pressure inside hydrate formation conditions. Whether hydrate formation can provide long term extra sealing still remains unverified in view of all co-existing phases that affect hydrate stability. Yet another storage option for CO2 is in the form of hydrate through exchange of in situ CH4 hydrate. Injection of CO2 into hydrate filled sediments is challenging due to the partial filling of pores with hydrate which results in low porosity and low permeability. Formation of new hydrate from injected CO2 will enhance these problems, Mixing N2 gas with the CO2 will increase permeability and will reduce driving forces for formation of new hydrate from pore water and injection gas. Hydrate can generally not reach thermodynamic equilibrium due to Gibbs' phase rule and the combined first and second laws of thermodynamics. These thermodynamic constraints on distribution of masses over co-existing phases are dynamically coupled to local mass- and heat-transport. Reservoir simulations are one possible method for investigation of possible scenarios related to injection of CO2 with N2 into aquifers containing CH4 hydrate. In this work we have developed prevoiusly modified RetrasoCodeBrite (RCB) simulator to handle injection of CO2/N2 gas mixtures. Hydrate formation and dissociation were determined by investigating Gibbs free energy differences between hydrate and hydrate formers. Gibbs free energy differences were calculated from changes in chemical potentials, which were obtained using non-equilibrium thermodynamic approach. Further extension of RCB has been implemented in this work through adding on-the-fly thermodynamic calculations. Correspondingly, hydrate phase transitions are calculated directly inside the code as a result of super

  14. Non-Equilibrium Turbulence and Two-Equation Modeling

    NASA Technical Reports Server (NTRS)

    Rubinstein, Robert

    2011-01-01

    Two-equation turbulence models are analyzed from the perspective of spectral closure theories. Kolmogorov theory provides useful information for models, but it is limited to equilibrium conditions in which the energy spectrum has relaxed to a steady state consistent with the forcing at large scales; it does not describe transient evolution between such states. Transient evolution is necessarily through nonequilibrium states, which can only be found from a theory of turbulence evolution, such as one provided by a spectral closure. When the departure from equilibrium is small, perturbation theory can be used to approximate the evolution by a two-equation model. The perturbation theory also gives explicit conditions under which this model can be valid, and when it will fail. Implications of the non-equilibrium corrections for the classic Tennekes-Lumley balance in the dissipation rate equation are drawn: it is possible to establish both the cancellation of the leading order Re1/2 divergent contributions to vortex stretching and enstrophy destruction, and the existence of a nonzero difference which is finite in the limit of infinite Reynolds number.

  15. Equilibrium and non-equilibrium metal-ceramic interfaces

    SciTech Connect

    Gao, Y.; Merkle, K.L.

    1991-01-01

    Metal-ceramic interfaces in thermodynamic equilibrium (Au/ZrO{sub 2}) and non-equilibrium (Au/MgO) have been studied by TEM and HREM. In the Au/ZrO{sub 2} system, ZrO{sub 2} precipitates formed by internal oxidation of a 7%Zr-Au alloy show a cubic ZrO{sub 2} phase. It appears that formation of the cubic ZrO{sub 2} is facilitated by alignment with the Au matrix. Most of the ZrO{sub 2} precipitates have a perfect cube-on-cube orientation relationship with the Au matrix. The large number of interfacial steps observed in a short-time annealing experiment indicate that the precipitates are formed by the ledge growth mechanism. The lowest interfacial energy is indicated by the dominance of closed-packed (111) Au/ZrO{sub 2} interfaces. In the Au/MgO system, composite films with small MgO smoke particles embedded in a Au matrix were prepared by a thin film technique. HREM observations show that most of the Au/MgO interfaces have a strong tendency to maintain a dense lattice structure across the interfaces irrespective of whether the interfaces are incoherent of semi-coherent. This indicates that there may be relatively strong bond between MgO and Au.

  16. Transient Memories in Non-Equilibrium Disordered Systems

    NASA Astrophysics Data System (ADS)

    Paulsen, Joseph; Nagel, Sidney

    2012-02-01

    Some non-equilibrium systems can store information of their external driving in an unexpected manner. They ``learn'' multiple driving amplitudes that can subsequently be read out. Notably, only one memory is retained after many driving cycles, even if all of the amplitudes are continually fed in. This behavior has been observed in diverse scenarios such as traveling charge-density waves [1] and simulations of sheared suspensions [2]. Here we explore this latter system experimentally using a suspension of neutrally buoyant non-Brownian particles in a very viscous fluid that is sheared cyclically in a Couette cell geometry. Starting from a random configuration, the particle trajectories are irreversible at first but, as had been shown [3], eventually settle into a configuration where they retrace their paths exactly during each cycle. We show that the resulting configuration comprises a memory of the driving amplitude, which can be read out by measuring the degree of particle reversibility versus shear amplitude. We also discuss this system's capacity for storing multiple memories.[4pt] [1] S. N. Coppersmith et al., PRL 78, 3983 (1997).[0pt] [2] N. C. Keim, S. R. Nagel, PRL 107, 010603 (2011).[0pt] [3] L. Cort'e, P. M. Chaikin, J. P. Gollub, D. J. Pine, Nature Phys. 4, 420 (2008).

  17. Non Equilibrium Transformations of Molecular Compounds Induced Mechanically

    SciTech Connect

    Descamps, M.; Willart, J. F.; Dudognon, E.

    2006-05-05

    Results clarifying the effects of mechanical milling on molecular solids are shortly reviewed. Special attention has been paid to the temperature of milling with regard to the glass transition temperature of the compounds. It is shown that decreasing the grinding temperature has for incidence to increase the amorphization tendency whereas milling above Tg produces a crystal-to-crystal transformation between polymorphic varieties. These observations contradict the usual proposition that grinding transforms the physical state only by a heating effect which induces a local melting. Equilibrium thermodynamics does not seem to be appropriate for describing the process. The driven alloys concept offers a more rational framework to interpret the effect of the milling temperature. Other results are presented which demonstrate the possibility for grinding to realize low temperature solid state alloying which offers new promising ways to stabilize amorphous molecular solids. In a second part the effect of dehydration of a molecular hydrate is described. It is shown that the rate of the dehydration process is a driving force for this other type of mechanical non equilibrium transformation.

  18. A non-equilibrium neutral model for analysing cultural change.

    PubMed

    Kandler, Anne; Shennan, Stephen

    2013-08-07

    Neutral evolution is a frequently used model to analyse changes in frequencies of cultural variants over time. Variants are chosen to be copied according to their relative frequency and new variants are introduced by a process of random mutation. Here we present a non-equilibrium neutral model which accounts for temporally varying population sizes and mutation rates and makes it possible to analyse the cultural system under consideration at any point in time. This framework gives an indication whether observed changes in the frequency distributions of a set of cultural variants between two time points are consistent with the random copying hypothesis. We find that the likelihood of the existence of the observed assemblage at the end of the considered time period (expressed by the probability of the observed number of cultural variants present in the population during the whole period under neutral evolution) is a powerful indicator of departures from neutrality. Further, we study the effects of frequency-dependent selection on the evolutionary trajectories and present a case study of change in the decoration of pottery in early Neolithic Central Europe. Based on the framework developed we show that neutral evolution is not an adequate description of the observed changes in frequency. Copyright © 2013 Elsevier Ltd. All rights reserved.

  19. Equilibrium and non-equilibrium metal-ceramic interfaces

    SciTech Connect

    Gao, Y.; Merkle, K.L.

    1991-12-31

    Metal-ceramic interfaces in thermodynamic equilibrium (Au/ZrO{sub 2}) and non-equilibrium (Au/MgO) have been studied by TEM and HREM. In the Au/ZrO{sub 2} system, ZrO{sub 2} precipitates formed by internal oxidation of a 7%Zr-Au alloy show a cubic ZrO{sub 2} phase. It appears that formation of the cubic ZrO{sub 2} is facilitated by alignment with the Au matrix. Most of the ZrO{sub 2} precipitates have a perfect cube-on-cube orientation relationship with the Au matrix. The large number of interfacial steps observed in a short-time annealing experiment indicate that the precipitates are formed by the ledge growth mechanism. The lowest interfacial energy is indicated by the dominance of closed-packed [111] Au/ZrO{sub 2} interfaces. In the Au/MgO system, composite films with small MgO smoke particles embedded in a Au matrix were prepared by a thin film technique. HREM observations show that most of the Au/MgO interfaces have a strong tendency to maintain a dense lattice structure across the interfaces irrespective of whether the interfaces are incoherent of semi-coherent. This indicates that there may be relatively strong bond between MgO and Au.

  20. Non-equilibrium Transport in Carbon based Adsorbate Systems

    NASA Astrophysics Data System (ADS)

    Fürst, Joachim; Brandbyge, Mads; Stokbro, Kurt; Jauho, Antti-Pekka

    2007-03-01

    We have used the Atomistix Tool Kit(ATK) and TranSIESTA[1] packages to investigate adsorption of iron atoms on a graphene sheet. The technique of both codes is based on density functional theory using local basis sets[2], and non-equilibrium Green's functions (NEGF) to calculate the charge distribution under external bias. Spin dependent electronic structure calculations are performed for different iron coverages. These reveal adsorption site dependent charge transfer from iron to graphene leading to screening effects. Transport calculations show spin dependent scattering of the transmission which is analysed obtaining the transmission eigenchannels for each spin type. The phenomena of electromigration of iron in these systems at finite bias will be discussed, estimating the so-called wind force from the reflection[3]. [1] M. Brandbyge, J.-L. Mozos, P. Ordejon, J. Taylor, and K. Stokbro. Physical Review B (Condensed Matter and Materials Physics), 65(16):165401/11-7, 2002. [2] Jose M. Soler, Emilio Artacho, Julian D. Gale, Alberto Garcia, Javier Junquera, Pablo Ordejon, and Daniel Sanchez-Portal. Journal of Physics Condensed Matter, 14(11):2745-2779, 2002. [3] Sorbello. Theory of electromigration. Solid State Physics, 1997.

  1. Non-equilibrium thermodynamic effects during cell division

    NASA Astrophysics Data System (ADS)

    Jose, Jorge

    2009-03-01

    A mitotic spindle is a regular structure within a cell consisting of oriented microtubule fibers. It plays a fundamental role in chromosome separation during cell division. Forming a spindle pattern is a major structural step towards mitosis. We have developed biophysical non-equilibrium thermodynamic models to describe in vitro chromosome driven spindle formation experiments in Xenopus extracts. Our first 2D model calculations [1] successfully described the order of events seen in some of the Xenopus extracts experiments, where the chromosomes are replaced by chromatin-covered micrometer magnetic beads. I will describe more realistic 3D improvements in our modeling analysis, which include microtubule contact forces and excluded volume [2, 3]. There are, however, a number of challenges that must be addressed for spindle modeling to continue to be a useful tool for understanding this fundamental biological process, in particular the biophysical simulation times. In this talk I will describe some important problems needing better biological data and hypothesis. I will also discuss our most recent numerical algorithmic improvements that are expected to greatly increase the simulations speed and thus allowing a more realistic representation of the experimental situation in Xenopus extracts. [1] S. C. Schaffner and J. V. Jose, PNAS, 103, 11166 (2006), [2] ibid in ``Methods in Cell Biology'' (Elsevier- Academic Press)(2008)and [3]ibid(to be published).

  2. Interaction of non-equilibrium oxygen plasma with sintered graphite

    NASA Astrophysics Data System (ADS)

    Cvelbar, Uroš

    2013-03-01

    Samples made from sintered graphite with grain size of about 10 μm were exposed to highly non-equilibrium oxygen plasma created in a borosilicate glass tube by an electrodeless RF discharge. The density of charged particles was about 7 × 1015 m-3 and the neutral oxygen atom density 6 × 1021 m-3. The sample temperature was determined by a calibrated IR detector while the surface modifications were quantified by XPS and water drop techniques. The sample surface was rapidly saturated with carbonyl groups. Prolonged treatment of samples caused a decrease in concentration of the groups what was explained by thermal destruction. Therefore, the created functional groups were temperature dependent. The heating of samples resulted in extensive chemical interaction between the O atoms and samples what was best monitored by decreasing of the O atom density with increasing sample temperature. The saturation with functional groups could be restored only after cooling down of the samples and repeated short plasma treatment at low temperature.

  3. Non-equilibrium plasma prevention of Schistosoma japonicum transmission

    NASA Astrophysics Data System (ADS)

    Wang, Xing-Quan; Wang, Feng-Peng; Chen, Wei; Huang, Jun; Bazaka, Kateryna; Ostrikov, Kostya (Ken)

    2016-10-01

    Schistosoma japonicum is a widespread human and animal parasite that causes intestinal and hepatosplenic schistosomiasis linked to colon, liver and bladder cancers, and anemia. Estimated 230 million people are currently infected with Schistosoma spp, with 779 million people at risk of contracting the parasite. Infection occurs when a host comes into contact with cercariae, a planktonic larval stage of the parasite, and can be prevented by inactivating the larvae, commonly by chemical treatment. We investigated the use of physical non-equilibrium plasma generated at atmospheric pressure using custom-made dielectric barrier discharge reactor to kill S. japonicum cercariae. Survival rate decreased with treatment time and applied power. Plasmas generated in O2 and air gas discharges were more effective in killing S. japonicum cercariae than that generated in He, which is directly related to the mechanism by which cercariae are inactivated. Reactive oxygen species, such as O atoms, abundant in O2 plasma and NO in air plasma play a major role in killing of S. japonicum cercariae via oxidation mechanisms. Similar level of efficacy is also shown for a gliding arc discharge plasma jet generated in ambient air, a system that may be more appropriate for scale-up and integration into existing water treatment processes.

  4. Non-equilibrium plasma prevention of Schistosoma japonicum transmission

    PubMed Central

    Wang, Xing-Quan; Wang, Feng-Peng; Chen, Wei; Huang, Jun; Bazaka, Kateryna; Ostrikov, Kostya (Ken)

    2016-01-01

    Schistosoma japonicum is a widespread human and animal parasite that causes intestinal and hepatosplenic schistosomiasis linked to colon, liver and bladder cancers, and anemia. Estimated 230 million people are currently infected with Schistosoma spp, with 779 million people at risk of contracting the parasite. Infection occurs when a host comes into contact with cercariae, a planktonic larval stage of the parasite, and can be prevented by inactivating the larvae, commonly by chemical treatment. We investigated the use of physical non-equilibrium plasma generated at atmospheric pressure using custom-made dielectric barrier discharge reactor to kill S. japonicum cercariae. Survival rate decreased with treatment time and applied power. Plasmas generated in O2 and air gas discharges were more effective in killing S. japonicum cercariae than that generated in He, which is directly related to the mechanism by which cercariae are inactivated. Reactive oxygen species, such as O atoms, abundant in O2 plasma and NO in air plasma play a major role in killing of S. japonicum cercariae via oxidation mechanisms. Similar level of efficacy is also shown for a gliding arc discharge plasma jet generated in ambient air, a system that may be more appropriate for scale-up and integration into existing water treatment processes. PMID:27739459

  5. Non-equilibrium phase transitions of aqueous starch systems.

    PubMed

    Biliaderis, C G

    1991-01-01

    Experimental data on phase transitions of aqueous starch systems, obtained by thermal analysis (TA) methods, are often indicative of irreversible (non-equilibrium) processes involving various metastable states. The thermal responses usually reflect composite effects from contributions of several opposing processes [e.g. annealing, melting, and (re)crystallization] taking place concurrently during TA. It is important, therefore, to recognize the temperature- and time-dependence of the structure of starch materials, if non-isothermal techniques are used for their characterization. Identifying the pertinent morphological features (supermolecular structure) of each particular system, as well as recognizing the role of water as a plasticizer which depresses the Tg of the amorphous domains, is essential to predict heat/moisture-mediated transformations of this biopolymer. The phase transition behaviour of granular starch and amylose-lipid complexes, as revealed by Differential Scanning Calorimetry and Thermomechanical Analysis, and the metastability of these materials are considered herein with respect to the effects of water and low molecular weight solutes.

  6. Non-Equilibrium Ionization Modeling of Coronal Mass Ejections

    NASA Astrophysics Data System (ADS)

    Rimple, Remington; Murphy, Nicholas Arnold; Shen, Chengcai

    2017-01-01

    Coronal Mass Ejections, or CMEs, are solar events that eject plasma and magnetic flux into interplanetary space. Contemporary sources have noted that the onset of CMEs are caused by some instability of the coronal magnetic field, and further allows heating of plasma upon expansion. Additionally, plasma that leaves the lower solar corona does not remain in ionization equilibrium due to the rapid expansion of plasma. We investigate the evolution of charge states of CME plasma using non-equilibrium ionization (NEI) modeling. These NEI models include radiative cooling and serve as baseline studies for special cases where no heat is being added to the plasma. Each of the simulated CMEs have initial conditions characteristic of active regions. Various function inputs, such as initial temperature, density and final velocity, allow us to examine the influence of certain parameters on the charge state evolution. The results of our project show that plasma originating from active regions display charge state evolutions substantially dependent on initial density and temperature. The CMEs starting with higher plasma density often show an abundance of lower charge states above the freeze-in height. Simulations starting from higher temperatures often show abundance peaks at charge states with closed electron shells.

  7. Non-equilibrium control of complex solids by nonlinear phononics.

    PubMed

    Mankowsky, Roman; Först, Michael; Cavalleri, Andrea

    2016-06-01

    We review some recent advances in the use of optical fields at terahertz frequencies to drive the lattice of complex materials. We will focus on the control of low energy collective properties of solids, which emerge on average when a high frequency vibration is driven and a new crystal structure induced. We first discuss the fundamentals of these lattice rearrangements, based on how anharmonic mode coupling transforms an oscillatory motion into a quasi-static deformation of the crystal structure. We then discuss experiments, in which selectively changing a bond angle turns an insulator into a metal, accompanied by changes in charge, orbital and magnetic order. We then address the case of light induced non-equilibrium superconductivity, a mysterious phenomenon observed in some cuprates and molecular materials when certain lattice vibrations are driven. Finally, we show that the dynamics of electronic and magnetic phase transitions in complex-oxide heterostructures follow distinctly new physical pathways in case of the resonant excitation of a substrate vibrational mode.

  8. Non-equilibrium control of complex solids by nonlinear phononics

    NASA Astrophysics Data System (ADS)

    Mankowsky, Roman; Först, Michael; Cavalleri, Andrea

    2016-06-01

    We review some recent advances in the use of optical fields at terahertz frequencies to drive the lattice of complex materials. We will focus on the control of low energy collective properties of solids, which emerge on average when a high frequency vibration is driven and a new crystal structure induced. We first discuss the fundamentals of these lattice rearrangements, based on how anharmonic mode coupling transforms an oscillatory motion into a quasi-static deformation of the crystal structure. We then discuss experiments, in which selectively changing a bond angle turns an insulator into a metal, accompanied by changes in charge, orbital and magnetic order. We then address the case of light induced non-equilibrium superconductivity, a mysterious phenomenon observed in some cuprates and molecular materials when certain lattice vibrations are driven. Finally, we show that the dynamics of electronic and magnetic phase transitions in complex-oxide heterostructures follow distinctly new physical pathways in case of the resonant excitation of a substrate vibrational mode.

  9. Non-equilibrium plasma prevention of Schistosoma japonicum transmission.

    PubMed

    Wang, Xing-Quan; Wang, Feng-Peng; Chen, Wei; Huang, Jun; Bazaka, Kateryna; Ostrikov, Kostya Ken

    2016-10-14

    Schistosoma japonicum is a widespread human and animal parasite that causes intestinal and hepatosplenic schistosomiasis linked to colon, liver and bladder cancers, and anemia. Estimated 230 million people are currently infected with Schistosoma spp, with 779 million people at risk of contracting the parasite. Infection occurs when a host comes into contact with cercariae, a planktonic larval stage of the parasite, and can be prevented by inactivating the larvae, commonly by chemical treatment. We investigated the use of physical non-equilibrium plasma generated at atmospheric pressure using custom-made dielectric barrier discharge reactor to kill S. japonicum cercariae. Survival rate decreased with treatment time and applied power. Plasmas generated in O2 and air gas discharges were more effective in killing S. japonicum cercariae than that generated in He, which is directly related to the mechanism by which cercariae are inactivated. Reactive oxygen species, such as O atoms, abundant in O2 plasma and NO in air plasma play a major role in killing of S. japonicum cercariae via oxidation mechanisms. Similar level of efficacy is also shown for a gliding arc discharge plasma jet generated in ambient air, a system that may be more appropriate for scale-up and integration into existing water treatment processes.

  10. Non-equilibrium plasma experiments at The Pennsylvania State University

    NASA Astrophysics Data System (ADS)

    Knecht, Sean; Bilen, Sven; Micci, Michael

    2013-10-01

    The authors have recently established the capability at The Pennsylvania State University to generate non-equilibrium plasma in atmospheric-pressure air and liquids such as water and saline. The plasma is generated using a high-voltage pulser (Pacific-Electronics PT-55), which is capable of voltage pulses of 75-ns width, peak voltage >50 kV, with rise-times on the order of nanoseconds. The electrodes are tungsten wires of various diameters (50 μm, 175 μm, 254 μm) insulated with nylon tubing. The spacing of the electrodes is controlled with translating mounts with resolution of tens of microns. Spectroscopy (Ocean Optics Model HR2000) is presently used for line identification only. Current and voltage vs. time will be measured with a 500-MHz bandwidth oscilloscope, a high-voltage probe and a shunt resistor connected to the ground side of the circuit. Research directions presently being pursued include the effects of solution electrical conductivity on plasma production and propellant ignition studies. Data from several types of experiments will be presented.

  11. A probability theory for non-equilibrium gravitational systems

    NASA Astrophysics Data System (ADS)

    Peñarrubia, Jorge

    2015-08-01

    This paper uses dynamical invariants to describe the evolution of collisionless systems subject to time-dependent gravitational forces without resorting to maximum-entropy probabilities. We show that collisionless relaxation can be viewed as a special type of diffusion process in the integral-of-motion space. In time-varying potentials with a fixed spatial symmetry the diffusion coefficients are closely related to virial quantities, such as the specific moment of inertia, the virial factor and the mean kinetic and potential energy of microcanonical particle ensembles. The non-equilibrium distribution function is found by convolving the initial distribution function with the Green function that solves Einstein's equation for freely diffusing particles. Such a convolution also yields a natural solution to the Fokker-Planck equations in the energy space. Our mathematical formalism can be generalized to potentials with a time-varying symmetry, where diffusion extends over multiple dimensions of the integral-of-motion space. The new probability theory is in many ways analogous to stochastic calculus, with two significant differences: (i) the equations of motion that govern the trajectories of particles are fully deterministic, and (ii) the diffusion coefficients can be derived self-consistently from microcanonical phase-space averages without relying on ergodicity assumptions. For illustration we follow the cold collapse of N-body models in a time-dependent logarithmic potential. Comparison between the analytical and numerical results shows excellent agreement in regions where the potential evolution does not depart too strongly from the adiabatic regime.

  12. Geometry and symmetry in non-equilibrium thermodynamic systems

    NASA Astrophysics Data System (ADS)

    Sonnino, Giorgio

    2017-06-01

    The ultimate aim of this series of works is to establish the closure equations, valid for thermodynamic systems out from the Onsager region, and to describe the geometry and symmetry in thermodynamic systems far from equilibrium. Geometry of a non-equilibrium thermodynamic system is constructed by taking into account the second law of thermodynamics and by imposing the validity of the Glansdorff-Prigogine Universal Criterion of Evolution. These two constraints allow introducing the metrics and the affine connection of the Space of the Thermodynamic Forces, respectively. The Lie group associated to the nonlinear Thermodynamic Coordinate Transformations (TCT) leaving invariant both the entropy production σ and the Glansdorff-Prigogine dissipative quantity P, is also described. The invariance under TCT leads to the formulation of the Thermodynamic Covariance Principle (TCP): The nonlinear closure equations, i.e. the flux-force relations, must be covariant under TCT. In other terms, the fundamental laws of thermodynamics should be manifestly covariant under transformations between the admissible thermodynamic forces (i.e. under TCT). The symmetry properties of a physical system are intimately related to the conservation laws characterizing the thermodynamic system. Noether's theorem gives a precise description of this relation. The macroscopic theory for closure relations, based on this geometrical description and subject to the TCP, is referred to as the Thermodynamic Field Theory (TFT). This theory ensures the validity of the fundamental theorems for systems far from equilibrium.

  13. Phase-field investigation on the non-equilibrium interface dynamics of rapid alloy solidification

    SciTech Connect

    Choi, Jeong

    2011-01-01

    solute trapping models are not rigorously verified due to the difficulty in experimentally measuring under rapid growth conditions. Moreover, since these solute trapping models include kinetic parameters which are difficult to directly measure from experiments, application of the solute trapping models or the associated analytic rapid solidification model is limited. These theoretical models for steady state rapid solidification which incorporate the solute trapping models do not describe the interdependency of solute diffusion, interface kinetics, and alloy thermodynamics. The phase-field approach allows calculating, spontaneously, the non-equilibrium growth effects of alloys and the associated time-dependent growth dynamics, without making the assumptions that solute partitioning is an explicit function of velocity, as is the current convention. In the research described here, by utilizing the phase-field model in the thin-interface limit, incorporating the anti-trapping current term, more quantitatively valid interface kinetics and solute diffusion across the interface are calculated. In order to sufficiently resolve the physical length scales (i.e. interface thickness and diffusion boundary length), grid spacings are continually adjusted in calculations. The full trajectories of transient planar growth dynamics under rapid directional solidification conditions with different pulling velocities are described. As a validation of a model, the predicted steady state conditions are consistent with the analytic approach for rapid growth. It was confirmed that rapid interface dynamics exhibits the abrupt acceleration of the planar front when the effect of the non-equilibrium solute partitioning at the interface becomes signi ficant. This is consistent with the previous linear stability analysis for the non-equilibrium interface dynamics. With an appropriate growth condition, the continuous oscillation dynamics was able to be simulated using continually adjusting grid

  14. Parity-Time Symmetry Breaking in Non-Equilibrium Magnetic Systems

    NASA Astrophysics Data System (ADS)

    Galda, Alexey; Vinokur, Valerii

    We introduce generalized non-Hermitian Hamiltonian approach for description of out-of-equilibrium phase transitions in the exemplary context of dissipative non-equilibrium dynamics of an open quantum spin system. The imaginary part of the proposed Hamiltonian describes effects of damping and the applied Slonczewski spin-transfer torque (STT). In the classical limit, our approach reproduces Landau-Lifshitz-Slonczewski dynamics of a large macrospin. We reveal the STT-driven parity-time (PT) symmetry-breaking transition corresponding to a phase transition from precessional magnetization dynamics to controlled switching. Micromagnetic simulations for nanoscale ferromagnetic disks demonstrate the predicted effect. Our findings break ground for a general quantitative description of out-of-equilibrium phase transitions.

  15. Manipulating shear-induced non-equilibrium transitions in colloidal films by feedback control.

    PubMed

    Vezirov, Tarlan A; Gerloff, Sascha; Klapp, Sabine H L

    2015-01-14

    Using Brownian Dynamics (BD) simulations we investigate non-equilibrium transitions of sheared colloidal films under controlled shear stress σxz. In our approach the shear rate [small gamma, Greek, dot above] is a dynamical variable, which relaxes on a time scale τc such that the instantaneous, configuration-dependent stress σxz(t) approaches a pre-imposed value. Investigating the dynamics under this "feedback-control" scheme we find unique behavior in regions where the flow curve σxz([small gamma, Greek, dot above]) of the uncontrolled system is monotonic. However, in non-monotonic regions our method allows to select between dynamical states characterized by different in-plane structure and viscosities. Indeed, the final state strongly depends on τc relative to an intrinsic relaxation time of the uncontrolled system. The critical values of τc are estimated on the basis of a simple model.

  16. Effects of ROS and RNS in non-equilibrium plasma enhanced oxidizing and nitriding

    NASA Astrophysics Data System (ADS)

    Datsyuk, Vitaly; Izmailov, Igor; Naumov, Vadym; Khomich, Vladimir; Tsiolko, Vyacheslav

    2016-09-01

    Plasma enhanced oxidizing and nitriding processes are of great interest for physics and applications. However, despite all advances in plasma technology, mechanisms of non-equilibrium plasma chemistry are not quite clear, particularly concerning reactive oxygen and nitrogen species (ROS/RNS) in metastable states. We tried to study this matter more detail. Experiments were done in a low temperature magnetron with a non-self-sustained glow discharge in oxygen/nitrogen/argon mixtures, employing electrical and optical diagnostics. Measurements showed that plasma processing is accompanied by the formation of electronically excited particles ROS/RNS. Computer modeling by using 0D-kinetic and 1D-fluid models including ionization, excitation, dissociation-recombination, vibrational relaxation, collisional quenching and radiation revealed the most probable mechanisms of plasma-chemical transformations. Effects of metastables of singlet oxygen O2*(a,b)and nitrogen N2*(A)as well as small but important radicals O*(1 D), N*(2 D) were also examined. Our study confirms the role of ROS/RNS in plasma kinetics and indicates the way toward more efficient oxygen and nitrogen plasma processing.

  17. Application Of Highly Non-Equilibrium Plasma For Modification Of Biomedical Samples

    NASA Astrophysics Data System (ADS)

    Mozetic, M.

    2010-07-01

    Non-equilibrium processing of organic materials enables modification of surface properties without changing bulk characteristics of materials. Heavily nonequilibrium state of gas is obtained in a variety of discharges, but electrode-less high frequency discharges are particularly useful. Such discharges often provide plasma with a low ionization fraction (often below 10^-5), but the dissociation fraction is often close to 100%. Neutral atoms readily react with organic materials even at room temperature. Depending on the type of organic material, both surface morphology and functionality are modified. The technique is particularly suitable for improvement of biocompatibility as well as for controlled degradation of biological cells. Several examples on the functionalization of polymer materials will be presented. Furthermore, extremely high etching selectivity of neutral oxygen atoms allows for modification of the surface roughness which, in combination with extremely high density of polar surface functional groups leads to super-hydrophilic character of some polymers. An interesting application of such technology is for modification of the surface properties of vascular grafts. Plasma treated artificial blood vessels exhibit excellent anti-thrombogenic properties as well as good ability for growing of endothelial cells. The same technique is applied for selective removal of some organic materials from biological cells. Proper treatment allows for revealing the internal structure of biological cells. Examples of treatment of different bacteria are presented.

  18. Tailoring non-equilibrium atmospheric pressure plasmas for healthcare technologies

    NASA Astrophysics Data System (ADS)

    Gans, Timo

    2012-10-01

    Non-equilibrium plasmas operated at ambient atmospheric pressure are very efficient sources for energy transport through reactive neutral particles (radicals and metastables), charged particles (ions and electrons), UV radiation, and electro-magnetic fields. This includes the unique opportunity to deliver short-lived highly reactive species such as atomic oxygen and atomic nitrogen. Reactive oxygen and nitrogen species can initiate a wide range of reactions in biochemical systems, both therapeutic and toxic. The toxicological implications are not clear, e.g. potential risks through DNA damage. It is anticipated that interactions with biological systems will be governed through synergies between two or more species. Suitable optimized plasma sources are improbable through empirical investigations. Quantifying the power dissipation and energy transport mechanisms through the different interfaces from the plasma regime to ambient air, towards the liquid interface and associated impact on the biological system through a new regime of liquid chemistry initiated by the synergy of delivering multiple energy carrying species, is crucial. The major challenge to overcome the obstacles of quantifying energy transport and controlling power dissipation has been the severe lack of suitable plasma sources and diagnostic techniques. Diagnostics and simulations of this plasma regime are very challenging; the highly pronounced collision dominated plasma dynamics at very small dimensions requires extraordinary high resolution - simultaneously in space (microns) and time (picoseconds). Numerical simulations are equally challenging due to the inherent multi-scale character with very rapid electron collisions on the one extreme and the transport of chemically stable species characterizing completely different domains. This presentation will discuss our recent progress actively combining both advance optical diagnostics and multi-scale computer simulations.

  19. Global dynamics of non-equilibrium gliding in animals.

    PubMed

    Yeaton, Isaac J; Socha, John J; Ross, Shane D

    2017-03-17

    Gliding flight-moving horizontally downward through the air without power-has evolved in a broad diversity of taxa and serves numerous ecologically relevant functions such as predator escape, expanding foraging locations, and finding mates, and has been suggested as an evolutionary pathway to powered flight. Historically, gliding has been conceptualized using the idealized conditions of equilibrium, in which the net aerodynamic force on the glider balances its weight. While this assumption is appealing for its simplicity, recent studies of glide trajectories have shown that equilibrium gliding is not the norm for most species. Furthermore, equilibrium theory neglects the aerodynamic differences between species, as well as how a glider can modify its glide path using control. To investigate non-equilibrium glide behavior, we developed a reduced-order model of gliding that accounts for self-similarity in the equations of motion, such that the lift and drag characteristics alone determine the glide trajectory. From analysis of velocity polar diagrams of horizontal and vertical velocity from several gliding species, we find that pitch angle, the angle between the horizontal and chord line, is a control parameter that can be exploited to modulate glide angle and glide speed. Varying pitch results in changing locations of equilibrium glide configurations in the velocity polar diagram that govern passive glide dynamics. Such analyses provide a new mechanism of interspecies comparison and tools to understand experimentally-measured kinematics data and theory. In addition, this analysis suggests that the lift and drag characteristics of aerial and aquatic autonomous gliders can be engineered to passively alter glide trajectories with minimal control effort.

  20. Step-wise pulling protocols for non-equilibrium dynamics

    NASA Astrophysics Data System (ADS)

    Ngo, Van Anh

    The fundamental laws of thermodynamics and statistical mechanics, and the deeper understandings of quantum mechanics have been rebuilt in recent years. It is partly because of the increasing power of computing resources nowadays, that allow shedding direct insights into the connections among the thermodynamics laws, statistical nature of our world, and the concepts of quantum mechanics, which have not yet been understood. But mostly, the most important reason, also the ultimate goal, is to understand the mechanisms, statistics and dynamics of biological systems, whose prevailing non-equilibrium processes violate the fundamental laws of thermodynamics, deviate from statistical mechanics, and finally complicate quantum effects. I believe that investigations of the fundamental laws of non-equilibrium dynamics will be a frontier research for at least several more decades. One of the fundamental laws was first discovered in 1997 by Jarzynski, so-called Jarzynski's Equality. Since then, different proofs, alternative descriptions of Jarzynski's Equality, and its further developments and applications have been quickly accumulated. My understandings, developments and applications of an alternative theory on Jarzynski's Equality form the bulk of this dissertation. The core of my theory is based on stepwise pulling protocols, which provide deeper insight into how fluctuations of reaction coordinates contribute to free-energy changes along a reaction pathway. We find that the most optimal pathways, having the largest contribution to free-energy changes, follow the principle of detailed balance. This is a glimpse of why the principle of detailed balance appears so powerful for sampling the most probable statistics of events. In a further development on Jarzynski's Equality, I have been trying to use it in the formalism of diagonal entropy to propose a way to extract useful thermodynamic quantities such temperature, work and free-energy profiles from far

  1. A non-equilibrium thermodynamics model of multicomponent mass and heat transport in pervaporation processes

    NASA Astrophysics Data System (ADS)

    Villaluenga, Juan P. G.; Kjelstrup, Signe

    2012-12-01

    The framework of non-equilibrium thermodynamics (NET) is used to derive heat and mass transport equations for pervaporation of a binary mixture in a membrane. In this study, the assumption of equilibrium of the sorbed phase in the membrane and the adjacent phases at the feed and permeate sides of the membrane is abandoned, defining the interface properties using local equilibrium. The transport equations have been used to model the pervaporation of a water-ethanol mixture, which is typically encountered in the dehydration of organics. The water and ethanol activities and temperature profiles are calculated taking mass and heat coupling effects and surfaces into account. The NET approach is deemed good because the temperature results provided by the model are comparable to experimental results available for water-alcohol systems.

  2. Non-equilibrium molecular dynamics simulations of spall in single crystal tantalum

    NASA Astrophysics Data System (ADS)

    Hahn, Eric N.; Germann, Timothy C.; Ravelo, Ramon J.; Hammerberg, James E.; Meyers, Marc A.

    2017-01-01

    Ductile tensile failure of tantalum is examined through large scale non-equilibrium molecular dynamics simulations. Several loading schemes including flyer plate impact, decaying shock loading via a frozen piston, and quasi-isentropic (constant strain-rate) expansion are employed to span tensile strain-rates of 108 to 1014 per second. Single crystals of <001> orientation are specifically evaluated to eliminate grain boundary effects. Heterogeneous void nucleation occurs principally at the intersection of deformation twins in single crystals. At high strain rates, multiple spall events occur throughout the material and voids continue to nucleate until relaxation waves arrive from adjacent events. At ultra-high strain rates, those approaching or exceeding the atomic vibrational frequency, spall strength saturates near the maximum theoretical spall strength.

  3. Atmospheric Pressure Non-Equilibrium Plasma as a Green Tool to Crosslink Gelatin Nanofibers

    PubMed Central

    Liguori, Anna; Bigi, Adriana; Colombo, Vittorio; Focarete, Maria Letizia; Gherardi, Matteo; Gualandi, Chiara; Oleari, Maria Chiara; Panzavolta, Silvia

    2016-01-01

    Electrospun gelatin nanofibers attract great interest as a natural biomaterial for cartilage and tendon repair despite their high solubility in aqueous solution, which makes them also difficult to crosslink by means of chemical agents. In this work, we explore the efficiency of non-equilibrium atmospheric pressure plasma in stabilizing gelatin nanofibers. We demonstrate that plasma represents an innovative, easy and environmentally friendly approach to successfully crosslink gelatin electrospun mats directly in the solid state. Plasma treated gelatin mats display increased structural stability and excellent retention of fibrous morphology after immersion in aqueous solution. This method can be successfully applied to induce crosslinking both in pure gelatin and genipin-containing gelatin electrospun nanofibers, the latter requiring an even shorter plasma exposure time. A complete characterization of the crosslinked nanofibres, including mechanical properties, morphological observations, stability in physiological solution and structural modifications, has been carried out in order to get insights on the occurring reactions triggered by plasma. PMID:27924840

  4. Non-equilibrium Green's functions method: Non-trivial and disordered leads

    NASA Astrophysics Data System (ADS)

    He, Yu; Wang, Yu; Klimeck, Gerhard; Kubis, Tillmann

    2014-11-01

    The non-equilibrium Green's function algorithm requires contact self-energies to model charge injection and extraction. All existing approaches assume infinitely periodic leads attached to a possibly quite complex device. This contradicts today's realistic devices in which contacts are spatially inhomogeneous, chemically disordered, and impacting the overall device characteristics. This work extends the complex absorbing potentials method for arbitrary, ideal, or non-ideal leads in atomistic tight binding representation. The algorithm is demonstrated on a Si nanowire with periodic leads, a graphene nanoribbon with trumpet shape leads, and devices with leads of randomly alloyed Si0.5Ge0.5. It is found that alloy randomness in the leads can reduce the predicted ON-state current of Si0.5Ge0.5 transistors by 45% compared to conventional lead methods.

  5. Atmospheric Pressure Non-Equilibrium Plasma as a Green Tool to Crosslink Gelatin Nanofibers

    NASA Astrophysics Data System (ADS)

    Liguori, Anna; Bigi, Adriana; Colombo, Vittorio; Focarete, Maria Letizia; Gherardi, Matteo; Gualandi, Chiara; Oleari, Maria Chiara; Panzavolta, Silvia

    2016-12-01

    Electrospun gelatin nanofibers attract great interest as a natural biomaterial for cartilage and tendon repair despite their high solubility in aqueous solution, which makes them also difficult to crosslink by means of chemical agents. In this work, we explore the efficiency of non-equilibrium atmospheric pressure plasma in stabilizing gelatin nanofibers. We demonstrate that plasma represents an innovative, easy and environmentally friendly approach to successfully crosslink gelatin electrospun mats directly in the solid state. Plasma treated gelatin mats display increased structural stability and excellent retention of fibrous morphology after immersion in aqueous solution. This method can be successfully applied to induce crosslinking both in pure gelatin and genipin-containing gelatin electrospun nanofibers, the latter requiring an even shorter plasma exposure time. A complete characterization of the crosslinked nanofibres, including mechanical properties, morphological observations, stability in physiological solution and structural modifications, has been carried out in order to get insights on the occurring reactions triggered by plasma.

  6. Atmospheric Pressure Non-Equilibrium Plasma as a Green Tool to Crosslink Gelatin Nanofibers.

    PubMed

    Liguori, Anna; Bigi, Adriana; Colombo, Vittorio; Focarete, Maria Letizia; Gherardi, Matteo; Gualandi, Chiara; Oleari, Maria Chiara; Panzavolta, Silvia

    2016-12-07

    Electrospun gelatin nanofibers attract great interest as a natural biomaterial for cartilage and tendon repair despite their high solubility in aqueous solution, which makes them also difficult to crosslink by means of chemical agents. In this work, we explore the efficiency of non-equilibrium atmospheric pressure plasma in stabilizing gelatin nanofibers. We demonstrate that plasma represents an innovative, easy and environmentally friendly approach to successfully crosslink gelatin electrospun mats directly in the solid state. Plasma treated gelatin mats display increased structural stability and excellent retention of fibrous morphology after immersion in aqueous solution. This method can be successfully applied to induce crosslinking both in pure gelatin and genipin-containing gelatin electrospun nanofibers, the latter requiring an even shorter plasma exposure time. A complete characterization of the crosslinked nanofibres, including mechanical properties, morphological observations, stability in physiological solution and structural modifications, has been carried out in order to get insights on the occurring reactions triggered by plasma.

  7. Impact of early stage non-equilibrium dynamics on photon production in relativistic heavy ion collisions

    NASA Astrophysics Data System (ADS)

    Oliva, L.; Ruggieri, M.; Plumari, S.; Scardina, F.; Greco, V.

    2017-04-01

    In this study we discuss our results on the spectrum of photons emitted from the quark-gluon plasma produced in heavy ion collisions at RHIC energies. Simulating the space-time evolution of the fireball by solving the relativistic Boltzmann transport equation and including two-particle scattering processes with photon emission allows us to make a first step in the description of thermal photons from the QGP as well as of those produced in the pre-equilibrium stage. Indeed, we consider not only a standard Glauber initial condition but also a model in which quarks and gluons are produced in the very early stage through the Schwinger mechanism by the decay of an initial color-electric field. In the latter approach relativistic kinetic equations are coupled in a self-consistent way to field equations. We aim at spotting the impact of early stage non-equilibrium dynamics on the photon production.

  8. Visualizing non-equilibrium lithiation of spinel oxide via in situ transmission electron microscopy.

    PubMed

    He, Kai; Zhang, Sen; Li, Jing; Yu, Xiqian; Meng, Qingping; Zhu, Yizhou; Hu, Enyuan; Sun, Ke; Yun, Hongseok; Yang, Xiao-Qing; Zhu, Yimei; Gan, Hong; Mo, Yifei; Stach, Eric A; Murray, Christopher B; Su, Dong

    2016-05-09

    Spinel transition metal oxides are important electrode materials for lithium-ion batteries, whose lithiation undergoes a two-step reaction, whereby intercalation and conversion occur in a sequential manner. These two reactions are known to have distinct reaction dynamics, but it is unclear how their kinetics affects the overall electrochemical response. Here we explore the lithiation of nanosized magnetite by employing a strain-sensitive, bright-field scanning transmission electron microscopy approach. This method allows direct, real-time, high-resolution visualization of how lithiation proceeds along specific reaction pathways. We find that the initial intercalation process follows a two-phase reaction sequence, whereas further lithiation leads to the coexistence of three distinct phases within single nanoparticles, which has not been previously reported to the best of our knowledge. We use phase-field theory to model and describe these non-equilibrium reaction pathways, and to directly correlate the observed phase evolution with the battery's discharge performance.

  9. Anisotropic Flow from Non-equilibrium Initial Condition with a Saturation Scale

    NASA Astrophysics Data System (ADS)

    Greco, V.; Ruggieri, M.; Scardina, F.; Plumari, S.; Puglisi, A.

    2014-03-01

    A current goal of relativistic heavy ion collisions experiments is to understand the impact of initial non-equilibrium on final observables. A Color Glass Condensate (CGC) as the limiting state of QCD matter at very high density implies initial non-thermal distribution at least for momenta below the saturation scale. In viscous hydrodynamics simulations, a standard Glauber initial condition leads to estimate 4πη/s ~ 1, while employing the Kharzeev-Levin-Nardi (KLN) modeling of the CGC leads to at least a factor of 2 larger η/s. Within a kinetic theory approach based on a relativistic Boltzmann-like transport simulation, our main result is that the out-of-equilibrium initial distribution in p-space reduces the effciency in building-up the elliptic flow. At RHIC energy we find the available data on υ2 are in agreement with a 4πη/s ~ 1 also for KLN initial conditions.

  10. Non-equilibrium steady states in two-temperature Ising models with Kawasaki dynamics

    NASA Astrophysics Data System (ADS)

    Borchers, Nick; Pleimling, Michel; Zia, R. K. P.

    2013-03-01

    From complex biological systems to a simple simmering pot, thermodynamic systems held out of equilibrium are exceedingly common in nature. Despite this, a general theory to describe these types of phenomena remains elusive. In this talk, we explore a simple modification of the venerable Ising model in hopes of shedding some light on these issues. In both one and two dimensions, systems attached to two distinct heat reservoirs exhibit many of the hallmarks of phase transition. When such systems settle into a non-equilibrium steady-state they exhibit numerous interesting phenomena, including an unexpected ``freezing by heating.'' There are striking and surprising similarities between the behavior of these systems in one and two dimensions, but also intriguing differences. These phenomena will be explored and possible approaches to understanding the behavior will be suggested. Supported by the US National Science Foundation through Grants DMR-0904999, DMR-1205309, and DMR-1244666

  11. How should we understand non-equilibrium many-body steady states?

    NASA Astrophysics Data System (ADS)

    Maghrebi, Mohammad; Gorshkov, Alexey

    : Many-body systems with both coherent dynamics and dissipation constitute a rich class of models which are nevertheless much less explored than their dissipationless counterparts. The advent of numerous experimental platforms that simulate such dynamics poses an immediate challenge to systematically understand and classify these models. In particular, nontrivial many-body states emerge as steady states under non-equilibrium dynamics. In this talk, I use a field-theoretic approach based on the Keldysh formalism to study nonequilibrium phases and phase transitions in such models. I show that an effective temperature generically emerges as a result of dissipation, and the universal behavior including the dynamics near the steady state is described by a thermodynamic universality class. In the end, I will also discuss possibilities that go beyond the paradigm of an effective thermodynamic behavior.

  12. Equilibrium sampling by re-weighting non-equilibrium simulation trajectories

    NASA Astrophysics Data System (ADS)

    Yang, Cheng; Wan, Biao; Xu, Shun; Wang, Yanting

    2015-12-01

    With the traditional equilibrium molecular simulations, it is usually difficult to efficiently visit the whole conformational space in complex systems, which are separated into some metastable conformational regions by high free energy barriers. The applied non-equilibrium process in simulations could enhance the transitions among these conformational regions, and the associated non-equilibrium effects can be removed by employing the Jarzynski equality (JE), then the global equilibrium distribution can be reproduced. However, the original JE requires the initial distribution of the non-equilibrium process is equilibrium, which largely limits the application of the non-equilibrium method in equilibrium sampling. By extending the previous method, the reweighted ensemble dynamics (RED), which re-weights many equilibrium simulation trajectories from arbitrary initial distribution to reproduce the global equilibrium, to non-equilibrium simulations, we present a method, named as re-weighted non-equilibrium ensemble dynamics (RNED), to generalize the JE in the non-equilibrium trajectories started from an arbitrary initial distribution, thus provide an efficient method to reproduce the equilibrium distribution based on multiple independent (short) non-equilibrium trajectories. We have illustrated the validity of the RNED in a one-dimensional toy model and in a Lennard-Jones system to detect the liquid-solid phase coexistence.

  13. Atomistic Simulation of Non-Equilibrium Phenomena in Hypersonic Flows

    NASA Astrophysics Data System (ADS)

    Norman, Paul Erik

    The goal of this work is to model the heterogeneous recombination of atomic oxygen on silica surfaces, which is of interest for accurately predicting the heating on vehicles traveling at hypersonic speeds. This is accomplished by creating a finite rate catalytic model, which describes recombination with a set of elementary gas-surface reactions. Fundamental to a description of surface catalytic reactions are the in situ chemical structures on the surface where recombination can occur. Using molecular dynamics simulations with the Reax GSISiO potential, we find that the chemical sites active in direct gas-phase reactions on silica surfaces consist of a small number of specific structures (or defects). The existence of these defects on real silica surfaces is supported by experimental results and the structure and energetics of these defects have been verified with quantum chemical calculations. The reactions in the finite rate catalytic model are based on the interaction of molecular and atomic oxygen with these defects. Trajectory calculations are used to find the parameters in the forward rate equations, while a combination of detailed balance and transition state theory are used to find the parameters in the reverse rate equations. The rate model predicts that the oxygen recombination coefficient is relatively constant at T (300-1000 K), in agreement with experimental results. At T > 1000 K the rate model predicts a drop off in the oxygen recombination coefficient, in disagreement with experimental results, which predict that the oxygen recombination coefficient increases with temperature. A discussion of the possible reasons for this disagreement, including non-adiabatic collision dynamics, variable surface site concentrations, and additional recombination mechanisms is presented. This thesis also describes atomistic simulations with Classical Trajectory Calculation Direction Simulation Monte Carlo (CTC-DSMC), a particle based method for modeling non-equilibrium

  14. The unsaturated hydraulic conductivity: measurement and non-equilibrium effects

    NASA Astrophysics Data System (ADS)

    Weller, U.; Vogel, H.

    2010-12-01

    potential and water content shows hysteretic behavior, this is the fact not only for the initial relations, but also for the long-term, stable conditions. The non-equilibrium at transitional conditions has been observed before. It can be explained by a rearrangement of the liquid/gas interfaces: first these are dominated by the dynamic behavior and the accessibility of the pore space. The long term equilibrium then is more towards an energetic more favorable configuration. With our measurements we have now an easy tool to quantify it over a wide range of water saturation, and to describe quantitatively the dynamic of the process.

  15. Perturbative Calculation of Quasi-Potential in Non-equilibrium Diffusions: A Mean-Field Example

    NASA Astrophysics Data System (ADS)

    Bouchet, Freddy; Gawȩdzki, Krzysztof; Nardini, Cesare

    2016-06-01

    In stochastic systems with weak noise, the logarithm of the stationary distribution becomes proportional to a large deviation rate function called the quasi-potential. The quasi-potential, and its characterization through a variational problem, lies at the core of the Freidlin-Wentzell large deviations theory (Freidlin and Wentzell, Random perturbations of dynamical systems, 2012). In many interacting particle systems, the particle density is described by fluctuating hydrodynamics governed by Macroscopic Fluctuation Theory (Bertini et al., arXiv:1404.6466 , 2014), which formally fits within Freidlin-Wentzell's framework with a weak noise proportional to 1/√{N}, where N is the number of particles. The quasi-potential then appears as a natural generalization of the equilibrium free energy to non-equilibrium particle systems. A key physical and practical issue is to actually compute quasi-potentials from their variational characterization for non-equilibrium systems for which detailed balance does not hold. We discuss how to perform such a computation perturbatively in an external parameter λ , starting from a known quasi-potential for λ =0. In a general setup, explicit iterative formulae for all terms of the power-series expansion of the quasi-potential are given for the first time. The key point is a proof of solvability conditions that assure the existence of the perturbation expansion to all orders. We apply the perturbative approach to diffusive particles interacting through a mean-field potential. For such systems, the variational characterization of the quasi-potential was proven by Dawson and Gartner (Stochastics 20:247-308, 1987; Stochastic differential systems, vol 96, pp 1-10, 1987). Our perturbative analysis provides new explicit results about the quasi-potential and about fluctuations of one-particle observables in a simple example

  16. Unfolding single RNA molecules: bridging the gap between equilibrium and non-equilibrium statistical thermodynamics.

    PubMed

    Bustamante, Carlos

    2005-11-01

    During the last 15 years, scientists have developed methods that permit the direct mechanical manipulation of individual molecules. Using this approach, they have begun to investigate the effect of force and torque in chemical and biochemical reactions. These studies span from the study of the mechanical properties of macromolecules, to the characterization of molecular motors, to the mechanical unfolding of individual proteins and RNA. Here I present a review of some of our most recent results using mechanical force to unfold individual molecules of RNA. These studies make it possible to follow in real time the trajectory of each molecule as it unfolds and characterize the various intermediates of the reaction. Moreover, if the process takes place reversibly it is possible to extract both kinetic and thermodynamic information from these experiments at the same time that we characterize the forces that maintain the three-dimensional structure of the molecule in solution. These studies bring us closer to the biological unfolding processes in the cell as they simulate in vitro, the mechanical unfolding of RNAs carried out in the cell by helicases. If the unfolding process occurs irreversibly, I show here that single-molecule experiments can still provide equilibrium, thermodynamic information from non-equilibrium data by using recently discovered fluctuation theorems. Such theorems represent a bridge between equilibrium and non-equilibrium statistical mechanics. In fact, first derived in 1997, the first experimental demonstration of the validity of fluctuation theorems was obtained by unfolding mechanically a single molecule of RNA. It is perhaps a sign of the times that important physical results are these days used to extract information about biological systems and that biological systems are being used to test and confirm fundamental new laws in physics.

  17. Non-equilibrium atomic condensates and mixtures: collective modes, condensate growth and thermalisation

    NASA Astrophysics Data System (ADS)

    Loon Lee, Kean; Proukakis, Nick P.

    2016-11-01

    The non-equilibrium dynamics of trapped ultracold atomic gases, or mixtures thereof, is an extremely rich subject. Despite 20 years of studies, and remarkable progress mainly on the experimental front, numerous open question remain, related to the growth, relaxation and thermalisation of such systems, and there is still no universally accepted theory for their theoretical description. In this paper we discuss one of the state-of-the-art kinetic approaches, which gives an intuitive picture of the physical processes happening at the microscopic scale, being broadly applicable both below and above the critical region (but not within the critical region itself, where fluctuations become dominant and symmetry breaking takes place). Specifically, the ‘Zaremba-Nikuni-Griffin’ (ZNG) scheme provides a self-consistent description of the coupling between the condensate and the thermal atoms, including the collisions between these two subsystems. It has been successfully tested against experiments in various settings, including investigation of collective modes (e.g. monopole, dipole and quadrupole modes), dissipation of topological excitations (solitons and vortices) as well as surface evaporative cooling. Here, we show that the ZNG model can capture two important aspects of non-equilibrium dynamics for both single-component and two-component BECs: the Kohn mode (the undamped dipole oscillation independent of interactions and temperature) and (re)thermalisation leading to condensate growth following sudden evaporation. Our simulations, performed in a spherically symmetric trap reveal (i) an interesting two-stage dynamics and the emergence of a prominent monopole mode in the evaporative cooling of a single-component Bose gas, and (ii) the long thermalisation time associated with the sympathetic cooling of a realistic two-component mixture. Related open questions arise about the mechanisms and the nature of thermalisation in such systems, where further controlled

  18. Markov state models from short non-equilibrium simulations—Analysis and correction of estimation bias

    NASA Astrophysics Data System (ADS)

    Nüske, Feliks; Wu, Hao; Prinz, Jan-Hendrik; Wehmeyer, Christoph; Clementi, Cecilia; Noé, Frank

    2017-03-01

    Many state-of-the-art methods for the thermodynamic and kinetic characterization of large and complex biomolecular systems by simulation rely on ensemble approaches, where data from large numbers of relatively short trajectories are integrated. In this context, Markov state models (MSMs) are extremely popular because they can be used to compute stationary quantities and long-time kinetics from ensembles of short simulations, provided that these short simulations are in "local equilibrium" within the MSM states. However, over the last 15 years since the inception of MSMs, it has been controversially discussed and not yet been answered how deviations from local equilibrium can be detected, whether these deviations induce a practical bias in MSM estimation, and how to correct for them. In this paper, we address these issues: We systematically analyze the estimation of MSMs from short non-equilibrium simulations, and we provide an expression for the error between unbiased transition probabilities and the expected estimate from many short simulations. We show that the unbiased MSM estimate can be obtained even from relatively short non-equilibrium simulations in the limit of long lag times and good discretization. Further, we exploit observable operator model (OOM) theory to derive an unbiased estimator for the MSM transition matrix that corrects for the effect of starting out of equilibrium, even when short lag times are used. Finally, we show how the OOM framework can be used to estimate the exact eigenvalues or relaxation time scales of the system without estimating an MSM transition matrix, which allows us to practically assess the discretization quality of the MSM. Applications to model systems and molecular dynamics simulation data of alanine dipeptide are included for illustration. The improved MSM estimator is implemented in PyEMMA of version 2.3.

  19. Reactive species in non-equilibrium atmospheric-pressure plasmas: Generation, transport, and biological effects

    NASA Astrophysics Data System (ADS)

    Lu, X.; Naidis, G. V.; Laroussi, M.; Reuter, S.; Graves, D. B.; Ostrikov, K.

    2016-05-01

    Non-equilibrium atmospheric-pressure plasmas have recently become a topical area of research owing to their diverse applications in health care and medicine, environmental remediation and pollution control, materials processing, electrochemistry, nanotechnology and other fields. This review focuses on the reactive electrons and ionic, atomic, molecular, and radical species that are produced in these plasmas and then transported from the point of generation to the point of interaction with the material, medium, living cells or tissues being processed. The most important mechanisms of generation and transport of the key species in the plasmas of atmospheric-pressure plasma jets and other non-equilibrium atmospheric-pressure plasmas are introduced and examined from the viewpoint of their applications in plasma hygiene and medicine and other relevant fields. Sophisticated high-precision, time-resolved plasma diagnostics approaches and techniques are presented and their applications to monitor the reactive species and plasma dynamics in the plasma jets and other discharges, both in the gas phase and during the plasma interaction with liquid media, are critically reviewed. The large amount of experimental data is supported by the theoretical models of reactive species generation and transport in the plasmas, surrounding gaseous environments, and plasma interaction with liquid media. These models are presented and their limitations are discussed. Special attention is paid to biological effects of the plasma-generated reactive oxygen and nitrogen (and some other) species in basic biological processes such as cell metabolism, proliferation, survival, etc. as well as plasma applications in bacterial inactivation, wound healing, cancer treatment and some others. Challenges and opportunities for theoretical and experimental research are discussed and the authors' vision for the emerging convergence trends across several disciplines and application domains is presented to

  20. Non-equilibrium phase behavior and friction of confined molecular films under shear: A non-equilibrium molecular dynamics study.

    PubMed

    Maćkowiak, Sz; Heyes, D M; Dini, D; Brańka, A C

    2016-10-28

    The phase behavior of a confined liquid at high pressure and shear rate, such as is found in elastohydrodynamic lubrication, can influence the traction characteristics in machine operation. Generic aspects of this behavior are investigated here using Non-equilibrium Molecular Dynamics (NEMD) simulations of confined Lennard-Jones (LJ) films under load with a recently proposed wall-driven shearing method without wall atom tethering [C. Gattinoni et al., Phys. Rev. E 90, 043302 (2014)]. The focus is on thick films in which the nonequilibrium phases formed in the confined region impact on the traction properties. The nonequilibrium phase and tribological diagrams are mapped out in detail as a function of load, wall sliding speed, and atomic scale surface roughness, which is shown can have a significant effect. The transition between these phases is typically not sharp as the external conditions are varied. The magnitude of the friction coefficient depends strongly on the nonequilibrium phase adopted by the confined region of molecules, and in general does not follow the classical friction relations between macroscopic bodies, e.g., the frictional force can decrease with increasing load in the Plug-Slip (PS) region of the phase diagram owing to structural changes induced in the confined film. The friction coefficient can be extremely low (∼0.01) in the PS region as a result of incommensurate alignment between a (100) face-centered cubic wall plane and reconstructed (111) layers of the confined region near the wall. It is possible to exploit hysteresis to retain low friction PS states well into the central localization high wall speed region of the phase diagram. Stick-slip behavior due to periodic in-plane melting of layers in the confined region and subsequent annealing is observed at low wall speeds and moderate external loads. At intermediate wall speeds and pressure values (at least) the friction coefficient decreases with increasing well depth of the LJ potential

  1. Non-equilibrium phase behavior and friction of confined molecular films under shear: A non-equilibrium molecular dynamics study

    NASA Astrophysics Data System (ADS)

    Maćkowiak, Sz.; Heyes, D. M.; Dini, D.; Brańka, A. C.

    2016-10-01

    The phase behavior of a confined liquid at high pressure and shear rate, such as is found in elastohydrodynamic lubrication, can influence the traction characteristics in machine operation. Generic aspects of this behavior are investigated here using Non-equilibrium Molecular Dynamics (NEMD) simulations of confined Lennard-Jones (LJ) films under load with a recently proposed wall-driven shearing method without wall atom tethering [C. Gattinoni et al., Phys. Rev. E 90, 043302 (2014)]. The focus is on thick films in which the nonequilibrium phases formed in the confined region impact on the traction properties. The nonequilibrium phase and tribological diagrams are mapped out in detail as a function of load, wall sliding speed, and atomic scale surface roughness, which is shown can have a significant effect. The transition between these phases is typically not sharp as the external conditions are varied. The magnitude of the friction coefficient depends strongly on the nonequilibrium phase adopted by the confined region of molecules, and in general does not follow the classical friction relations between macroscopic bodies, e.g., the frictional force can decrease with increasing load in the Plug-Slip (PS) region of the phase diagram owing to structural changes induced in the confined film. The friction coefficient can be extremely low (˜0.01) in the PS region as a result of incommensurate alignment between a (100) face-centered cubic wall plane and reconstructed (111) layers of the confined region near the wall. It is possible to exploit hysteresis to retain low friction PS states well into the central localization high wall speed region of the phase diagram. Stick-slip behavior due to periodic in-plane melting of layers in the confined region and subsequent annealing is observed at low wall speeds and moderate external loads. At intermediate wall speeds and pressure values (at least) the friction coefficient decreases with increasing well depth of the LJ potential

  2. Comparison of DNA decatenation by Escherichia coli topoisomerase IV and topoisomerase III: implications for non-equilibrium topology simplification

    PubMed Central

    Seol, Yeonee; Hardin, Ashley H.; Strub, Marie-Paule; Charvin, Gilles; Neuman, Keir C.

    2013-01-01

    Type II topoisomerases are essential enzymes that regulate DNA topology through a strand-passage mechanism. Some type II topoisomerases relax supercoils, unknot and decatenate DNA to below thermodynamic equilibrium. Several models of this non-equilibrium topology simplification phenomenon have been proposed. The kinetic proofreading (KPR) model postulates that strand passage requires a DNA-bound topoisomerase to collide twice in rapid succession with a second DNA segment, implying a quadratic relationship between DNA collision frequency and relaxation rate. To test this model, we used a single-molecule assay to measure the unlinking rate as a function of DNA collision frequency for Escherichia coli topoisomerase IV (topo IV) that displays efficient non-equilibrium topology simplification activity, and for E. coli topoisomerase III (topo III), a type IA topoisomerase that unlinks and unknots DNA to equilibrium levels. Contrary to the predictions of the KPR model, topo IV and topo III unlinking rates were linearly related to the DNA collision frequency. Furthermore, topo III exhibited decatenation activity comparable with that of topo IV, supporting proposed roles for topo III in DNA segregation. This study enables us to rule out the KPR model for non-equilibrium topology simplification. More generally, we establish an experimental approach to systematically control DNA collision frequency. PMID:23460205

  3. Toward a Multi-scale Phase Transition Kinetics Methodology: From Non-Equilibrium Statistical Mechanics to Hydrodynamics

    NASA Astrophysics Data System (ADS)

    Belof, Jonathan; Orlikowski, Daniel; Wu, Christine; McLaughlin, Keith

    2013-06-01

    Shock and ramp compression experiments are allowing us to probe condensed matter under extreme conditions where phase transitions and other non-equilibrium aspects can now be directly observed, but first principles simulation of kinetics remains a challenge. A multi-scale approach is presented here, with non-equilibrium statistical mechanical quantities calculated by molecular dynamics (MD) and then leveraged to inform a classical nucleation and growth kinetics model at the hydrodynamic scale. Of central interest is the free energy barrier for the formation of a critical nucleus, with direct NEMD presenting the challenge of relatively long timescales necessary to resolve nucleation. Rather than attempt to resolve the time-dependent nucleation sequence directly, the methodology derived here is built upon the non-equilibrium work theorem in order to bias the formation of a critical nucleus and thus construct the nucleation and growth rates. Having determined these kinetic terms from MD, a hydrodynamics implementation of Kolmogorov-Johnson-Mehl-Avrami (KJMA) kinetics and metastabilty is applied to the dynamic compressive freezing of water and compared with recent ramp compression experiments [Dolan et al., Nature (2007)] Lawrence Livermore National Laboratory is operated by Lawrence Livermore National Security, LLC, for the U.S. Department of Energy, National Nuclear Security Administration under Contract DE-AC52-07NA27344.

  4. Atomistic-level non-equilibrium model for chemically reactive systems based on steepest-entropy-ascent quantum thermodynamics

    NASA Astrophysics Data System (ADS)

    Li, Guanchen; Al-Abbasi, Omar; von Spakovsky, Michael R.

    2014-10-01

    This paper outlines an atomistic-level framework for modeling the non-equilibrium behavior of chemically reactive systems. The framework called steepest- entropy-ascent quantum thermodynamics (SEA-QT) is based on the paradigm of intrinsic quantum thermodynamic (IQT), which is a theory that unifies quantum mechanics and thermodynamics into a single discipline with wide applications to the study of non-equilibrium phenomena at the atomistic level. SEA-QT is a novel approach for describing the state of chemically reactive systems as well as the kinetic and dynamic features of the reaction process without any assumptions of near-equilibrium states or weak-interactions with a reservoir or bath. Entropy generation is the basis of the dissipation which takes place internal to the system and is, thus, the driving force of the chemical reaction(s). The SEA-QT non-equilibrium model is able to provide detailed information during the reaction process, providing a picture of the changes occurring in key thermodynamic properties (e.g., the instantaneous species concentrations, entropy and entropy generation, reaction coordinate, chemical affinities, reaction rate, etc). As an illustration, the SEA-QT framework is applied to an atomistic-level chemically reactive system governed by the reaction mechanism F + H2 leftrightarrow FH + H.

  5. Analysis of H atoms in a negative ion source plasma with the non-equilibrium electron energy distribution function.

    PubMed

    Koga, S; Shibata, T; Terasaki, R; Kameyama, N; Hatayama, A; Bacal, M; Tsumori, K

    2012-02-01

    In negative ion sources for the neutral beam injection, it is important to calculate H atom flux onto the plasma grid (PG) surface for the evaluation of H(-) production on the PG surface. We have developed a neutral (H(2) molecules and H atoms) transport code. In the present study, the neutral transport code is applied to the analysis of the H(2) and H transport in a NIFS-R&D ion source in order to calculate the flux onto the PG surface. Taking into account non-equilibrium feature of the electron energy distribution function (EEDF), i.e., the fast electron component, we have done the neutral transport simulation. The results suggest that the precise evaluation of the EEDF, especially in the energy range 15 eV < E < 30 eV is important for the dissociation rate of H(2) molecules by the electron impact collision and the resultant H atom flux on the PG.

  6. Non-equilibrium steady states: fluctuations and large deviations of the density and of the current

    NASA Astrophysics Data System (ADS)

    Derrida, Bernard

    2007-07-01

    These lecture notes give a short review of methods such as the matrix ansatz, the additivity principle or the macroscopic fluctuation theory, developed recently in the theory of non-equilibrium phenomena. They show how these methods allow us to calculate the fluctuations and large deviations of the density and the current in non-equilibrium steady states of systems like exclusion processes. The properties of these fluctuations and large deviation functions in non-equilibrium steady states (for example, non-Gaussian fluctuations of density or non-convexity of the large deviation function which generalizes the notion of free energy) are compared with those of systems at equilibrium.

  7. Experimental measurements of a non-equilibrium thermal boundary layer flow

    NASA Astrophysics Data System (ADS)

    Biles, Drummond; Ebadi, Alireza; Whie, Chris

    2016-11-01

    Data from a newly constructed non-equilibrium and thermal boundary layer wind tunnel is presented. The bottom wall of the tunnel is a sectioned-wall design composed of twelve aluminum 6061 plates with resistive heaters adhered to their underside. Each section is heated and controlled using independent feedback loop controllers. The freestream temperature is controlled by an upstream array of resistive heaters and a feedback controller. Experimental data with strong perturbations that produce non-equilibrium boundary layer flow behaviors is presented. Data for ZPG conditions are provided for validation purposes, and the effects of non-equilibrium behaviors on the transport of momentum and heat are discussed.

  8. Carbon Dioxide reduction by non-equilibrium electrocatalysis plasma reactor

    NASA Astrophysics Data System (ADS)

    Amouroux, J.; Cavadias, S.; Doubla, A.

    2011-03-01

    A possible strategy to increase the added value from CCS, is to consider it as a raw material for the production of liquid fuels, or chemical products. The most studied ways related to CO2 reduction, with formation of molecules such as CH3OH or syngas, is the reaction with H2 (exothermic reaction needing catalytic activation), or CH4 (endothermic reaction taking place at high temperature) with the use of a catalyst. The synthesis of CH3OH is performed on Lewis acid type sites (default of electrons) Cu/Zn/Al2O3. However the products of the reaction i.e. the water and methanol molecules, are very polar, resulting in a very low desorption rate. So in this reaction the key step is water desorption (Lewis basis). The increase of temperature in order to increase this desorption rate, leads to a cracking and the deposition of carbon in the catalyst, limiting its lifetime. Plasma driven catalysis allows firstly, a vibrational activation of CO2, H2 or CH4 through electron-molecule collisions, making easier their dissociation at low temperature and secondly expels water from the catalyst sites by supplying electrons (electropolarisation). The results show an increase of the yield in CH3OH with plasma and catalyst, confirming the action of the plasma. However energy consumption remains relatively high.

  9. Physics and chemistry of non-equilibrium, atmospheric pressure plasmas containing fluorine

    NASA Astrophysics Data System (ADS)

    Yang, Xiawan

    The physics and chemistry of low temperature, atmospheric pressure plasmas containing fluorine have been investigated with current, voltage, and power measurements, infrared absorption spectroscopy, and optical emission spectroscopy. The plasma source consisted of two closely spaced metal electrodes, supplied with radio-frequency power at 13.56 MHz. The fluorine atom concentration was measured in the downstream region of a carbon tetrafluoride and helium plasma using infrared spectroscopy. The gas discharge generated 1.2 x 10 15 cm-3 of F atoms, which is ˜100 times higher than that found in low-pressure plasmas. A numerical model of the plasma indicated that most of the F atoms were generated by the reaction of CF4 with metastable helium atoms. It was discovered that the atmospheric pressure, radio-frequency plasma could be made to undergo sheath breakdown with conversion from an alpha- to a gamma-mode discharge. With 0.4 vol% nitrogen in helium, this transition was accompanied by a 40% drop in voltage, a 12% decrease in current, and a surge in power density from 25 to 2083 W/cm3. The shift in intense plasma emission from the bulk gas to the surface of the electrodes was documented by optical techniques. When the plasma was operated in the alpha and gamma modes, 5.2% and 15.2% of the N2 was dissociated into atoms, respectively. In the latter case, the low dissociation efficiency was ascribed to the nonuniform structure of the plasma across the gap. In plasmas containing 1.0 vol% carbon tetrafluoride and sulfur hexafluoride, the alpha to gamma transition occurred smoothly with no discharge contraction. The electron density in these plasmas equaled 6.0 x 1011 cm-3, compared to 1.9 x 1013 cm -3 in pure helium. The drop in plasma density was due to fast electron attachment processes caused by the electronegative molecules, which also resulted in a high density of negative ions, up to 1013 cm-3. In addition, the non-equilibrium, atmospheric pressure plasma was used to

  10. Dynamic relaxation of a levitated nanoparticle from a non-equilibrium steady state.

    PubMed

    Gieseler, Jan; Quidant, Romain; Dellago, Christoph; Novotny, Lukas

    2014-05-01

    Fluctuation theorems are a generalization of thermodynamics on small scales and provide the tools to characterize the fluctuations of thermodynamic quantities in non-equilibrium nanoscale systems. They are particularly important for understanding irreversibility and the second law in fundamental chemical and biological processes that are actively driven, thus operating far from thermal equilibrium. Here, we apply the framework of fluctuation theorems to investigate the important case of a system relaxing from a non-equilibrium state towards equilibrium. Using a vacuum-trapped nanoparticle, we demonstrate experimentally the validity of a fluctuation theorem for the relative entropy change occurring during relaxation from a non-equilibrium steady state. The platform established here allows non-equilibrium fluctuation theorems to be studied experimentally for arbitrary steady states and can be extended to investigate quantum fluctuation theorems as well as systems that do not obey detailed balance.

  11. Transverse-momentum spectra of strange particles produced in Pb+Pb collisions at = 2.76 TeV in the chemical non-equilibrium model

    NASA Astrophysics Data System (ADS)

    Florkowski, Wojciech

    2017-01-01

    It is first shown that recent problems in heavy-ion collisions at the LHC energies, connected with thermal description of the proton yield and the pion spectra at low transverse-momenta, can be simultaneously explained within a chemical non-equilibrium statistical hadronization framework. Then the predictions of this approach for the production of strange particles are presented.

  12. Non-equilibrium statistical mechanics: from a paradigmatic model to biological transport

    NASA Astrophysics Data System (ADS)

    Chou, T.; Mallick, K.; Zia, R. K. P.

    2011-11-01

    Unlike equilibrium statistical mechanics, with its well-established foundations, a similar widely accepted framework for non-equilibrium statistical mechanics (NESM) remains elusive. Here, we review some of the many recent activities on NESM, focusing on some of the fundamental issues and general aspects. Using the language of stochastic Markov processes, we emphasize general properties of the evolution of configurational probabilities, as described by master equations. Of particular interest are systems in which the dynamics violates detailed balance, since such systems serve to model a wide variety of phenomena in nature. We next review two distinct approaches for investigating such problems. One approach focuses on models sufficiently simple to allow us to find exact, analytic, non-trivial results. We provide detailed mathematical analyses of a one-dimensional continuous-time lattice gas, the totally asymmetric exclusion process. It is regarded as a paradigmatic model for NESM, much like the role the Ising model played for equilibrium statistical mechanics. It is also the starting point for the second approach, which attempts to include more realistic ingredients in order to be more applicable to systems in nature. Restricting ourselves to the area of biophysics and cellular biology, we review a number of models that are relevant for transport phenomena. Successes and limitations of these simple models are also highlighted.

  13. Collective non-equilibrium dynamics at surfaces and the spatio-temporal edge

    NASA Astrophysics Data System (ADS)

    Marcuzzi, M.; Gambassi, A.; Pleimling, M.

    2012-11-01

    Symmetries represent a fundamental constraint for physical systems and relevant new phenomena often emerge as a consequence of their breaking. An important example is provided by space- and time-translational invariance in statistical systems, which hold at a coarse-grained scale in equilibrium and are broken by spatial and temporal boundaries, the former being implemented by surfaces —unavoidable in real samples— the latter by some initial condition for the dynamics which causes a non-equilibrium evolution. While the separate effects of these two boundaries are well understood, we demonstrate here that additional, unexpected features arise upon approaching the effective edge formed by their intersection. For this purpose, we focus on the classical semi-infinite Ising model with spin-flip dynamics evolving out of equilibrium at its critical point. Considering both subcritical and critical values of the coupling among surface spins, we present numerical evidence of a scaling regime with universal features which emerges upon approaching the spatio-temporal edge and we rationalise these findings within a field-theoretical approach.

  14. Synthesis of Silane and Silicon in a Non-equilibrium Plasma Jet

    NASA Technical Reports Server (NTRS)

    Calcote, H. F.

    1978-01-01

    The original objective of this program was to determine the feasibility of high volume, low-cost production of high purity silane or solar cell grade silicon using a non equilibrium plasma jet. The emphasis was changed near the end of the program to determine the feasibility of preparing photovoltaic amorphous silicon films directly using this method. The non equilibrium plasma jet should be further evaluated as a technique for producing high efficiency photovoltaic amorphous silicon films.

  15. Evolution of Zinc Oxide Nanostructures from Non-Equilibrium Deposition Conditions

    DTIC Science & Technology

    2016-07-11

    AFRL-AFOSR-VA-TR-2016-0247 Evolution of Zinc Oxide Nanostructures from Non-Equilibrium Deposition Conditions XUDONG WANG UNIVERSITY OF WISCONSIN...Oxide Nanostructures from Non-Equilibrium Deposition Conditions 5a. CONTRACT NUMBER FA9550-13-1-0168 5b. GRANT NUMBER 5c. PROGRAM ELEMENT NUMBER...6. AUTHOR(S) Wang, Xudong 5d. PROJECT NUMBER 5e. TASK NUMBER 5f. WORK UNIT NUMBER 7. PERFORMING ORGANIZATION NAME(S) AND ADDRESS(ES) BOARD OF

  16. Simulating adsorption of U(VI) under transient groundwater flow and hydrochemistry – Physical versus non-equilibrium model

    SciTech Connect

    Greskowiak, Janek; Hay, Michael B.; Prommer, Henning; Liu, Chongxuan; Post, Vincent; Ma, Rui; Davis, James A.; Zheng, Chunmiao; Zachara, John M.

    2011-08-03

    Coupled intra-grain diffusional mass-transfer and non-linear surface complexation processes play an important role for the transport behaviour of U(VI) in contaminated aquifers. Two alternative model approaches for simulating these coupled processes have been analysed and compared: (i) the physical non-equilibrium approach that explicitly accounts for aqueous speciation and instantaneous surface complexation reactions in the intra-grain regions and approximates the diffusive mass exchange between the immobile intra-grain pore water and the advective pore water as multi-rate 1st-order mass transfer and (ii) the chemical non-equilibrium approach that approximates the diffusion-limited intra-grain surface complexation reactions by a set of multiple 1st-order surface complexation reaction kinetics, thereby eliminating the explicit treatment of aqueous speciation in the intra grain pore water. Model comparison has been carried out for column and field scale scenarios, representing the highly transient hydrological and geochemical conditions in the U(VI)-contaminated aquifer at the Hanford 300A site, Washington, USA. It was found that the response of apparent U(VI) adsorption/desorption kinetic behaviour to hydrogeochemically induced changes in U(VI) sorption strength is more pronounced in the physical than in the chemical non-equilibrium model. The magnitude of the differences in model behaviour depends particularly on the degree of disequilibrium between the advective and immobile phase U(VI) concentrations. While a clear difference in U(VI) transport behaviour between the two models was noticeable for the column-scale scenarios, only minor differences were found for the Hanford 300A field scale scenarios, where the model-generated disequilibrium conditions were less pronounced as a result of high frequent groundwater flow reversals.

  17. Non-equilibrium statistical mechanics theory for the large scales of geophysical flows

    NASA Astrophysics Data System (ADS)

    Eric, S.; Bouchet, F.

    2010-12-01

    The aim of any theory of turbulence is to understand the statistical properties of the velocity field. As a huge number of degrees of freedom is involved, statistical mechanics is a natural approach. The self-organization of two-dimensional and geophysical turbulent flows is addressed based on statistical mechanics methods. We discuss classical and recent works on this subject; from the statistical mechanics basis of the theory up to applications to Jupiter’s troposphere and ocean vortices and jets. The equilibrium microcanonical measure is built from the Liouville theorem. Important statistical mechanics concepts (large deviations, mean field approach) and thermodynamic concepts (ensemble inequivalence, negative heat capacity) are briefly explained and used to predict statistical equilibria for turbulent flows. This is applied to make quantitative models of two-dimensional turbulence, the Great Red Spot and other Jovian vortices, ocean jets like the Gulf-Stream, and ocean vortices. A detailed comparison between these statistical equilibria and real flow observations will be discussed. We also present recent results for non-equilibrium situations, for which forces and dissipation are in a statistical balance. As an example, the concept of phase transition allows us to describe drastic changes of the whole system when a few external parameters are changed. F. Bouchet and E. Simonnet, Random Changes of Flow Topology in Two-Dimensional and Geophysical Turbulence, Physical Review Letters 102 (2009), no. 9, 094504-+. F. Bouchet and J. Sommeria, Emergence of intense jets and Jupiter's Great Red Spot as maximum-entropy structures, Journal of Fluid Mechanics 464 (2002), 165-207. A. Venaille and F. Bouchet, Ocean rings and jets as statistical equilibrium states, submitted to JPO F. Bouchet and A. Venaille, Statistical mechanics of two-dimensional and geophysical flows, submitted to Physics Reports Non-equilibrium phase transitions for the 2D Navier-Stokes equations with

  18. Anomalous long-range correlations at a non-equilibrium phase transition

    NASA Astrophysics Data System (ADS)

    Gerschenfeld, A.; Derrida, B.

    2012-02-01

    Non-equilibrium diffusive systems are known to exhibit long-range correlations, which decay like the inverse 1/L of the system size L in one dimension. Here, taking the example of the ABC model, we show that this size dependence becomes anomalous (the decay becomes a non-integer power of L) when the diffusive system approaches a second-order phase transition. This power-law decay as well as the L-dependence of the time-time correlations can be understood in terms of the dynamics of the amplitude of the first Fourier mode of the particle densities. This amplitude evolves according to a Langevin equation in a quartic potential, which was introduced in a previous work to explain the anomalous behavior of the cumulants of the current near this second-order phase transition. Here we also compute some of these cumulants away from the transition and show that they become singular as the transition is approached, matching with what we already knew in the critical regime.

  19. Non-equilibrium thermodynamics of thiol/disulfide redox systems: A perspective on redox systems biology

    PubMed Central

    Kemp, Melissa; Go, Young-Mi; Jones, Dean P.

    2008-01-01

    Understanding the dynamics of redox elements in biologic systems remains a major challenge for redox signaling and oxidative stress research. Central redox elements include evolutionarily conserved subsets of cysteines and methionines of proteins which function as sulfur switches and labile reactive oxygen species (ROS) and reactive nitrogen species (RNS) which function in redox signaling. The sulfur switches depend upon redox environments in which rates of oxidation are balanced with rates of reduction through the thioredoxins, glutathione/glutathione disulfide and cysteine/cystine redox couples. These central couples, which we term redox control nodes, are maintained at stable but non-equilibrium steady states, are largely independently regulated in different subcellular compartments and are quasi-independent from each other within compartments. Disruption of the redox control nodes can differentially affect sulfur switches, thereby creating a diversity of oxidative stress responses. Systems biology provides approaches to address the complexity of these responses. In the present review, we summarize thiol/disulfide pathway, redox potential and rate information as a basis for kinetic modeling of sulfur switches. The summary identifies gaps in knowledge especially related to redox communication between compartments, definition of redox pathways and discrimination between types of sulfur switches. A formulation for kinetic modeling of GSH/GSSG redox control indicates that systems biology could encourage novel therapeutic approaches to protect against oxidative stress by identifying specific redox-sensitive sites which could be targeted for intervention. PMID:18155672

  20. NON-EQUILIBRIUM CHEMISTRY OF DYNAMICALLY EVOLVING PRESTELLAR CORES. II. IONIZATION AND MAGNETIC FIELD

    SciTech Connect

    Tassis, Konstantinos; Willacy, Karen; Yorke, Harold W.; Turner, Neal J.

    2012-07-20

    We study the effect that non-equilibrium chemistry in dynamical models of collapsing molecular cloud cores has on measurements of the magnetic field in these cores, the degree of ionization, and the mean molecular weight of ions. We find that OH and CN, usually used in Zeeman observations of the line-of-sight magnetic field, have an abundance that decreases toward the center of the core much faster than the density increases. As a result, Zeeman observations tend to sample the outer layers of the core and consistently underestimate the core magnetic field. The degree of ionization follows a complicated dependence on the number density at central densities up to 10{sup 5} cm{sup -3} for magnetic models and 10{sup 6} cm{sup -3} in non-magnetic models. At higher central densities, the scaling approaches a power law with a slope of -0.6 and a normalization which depends on the cosmic-ray ionization rate {zeta} and the temperature T as ({zeta}T){sup 1/2}. The mean molecular weight of ions is systematically lower than the usually assumed value of 20-30, and, at high densities, approaches a value of 3 due to the asymptotic dominance of the H{sup +}{sub 3} ion. This significantly lower value implies that ambipolar diffusion operates faster.

  1. Non-Equilibrium, Chance and Change in Family Therapy.

    ERIC Educational Resources Information Center

    Elkaim, Mony

    1981-01-01

    Uses a case study to show how a therapist can help a family by breaking their loops of preferential behaviors. Describes a systemic approach that helps prevent families from using the same feedback loops that lead to dead-ends in their behavior. (JAC)

  2. PREFACE: Fourh Workshop on Non-Equilibrium Phenomena in Supercooled Fluids, Glasses and Amorphous Materials

    NASA Astrophysics Data System (ADS)

    Andreozzi, Laura; Giordano, Marco; Leporini, Dino; Tosi, Mario

    2007-04-01

    This special issue of Journal of Physics: Condensed Matter presents the Proceedings of the Fourh Workshop on Non-Equilibrium Phenomena in Supercooled Fluids, Glasses and Amorphous Materials, held in Pisa from 17-22 September 2006. This was the fourth of a series of workshops on this theme started in 1995 as a joint initiative of the Università di Pisa and the Scuola Normale Superiore. The 2006 edition was attended by about 200 participants from Europe, Asia and the Americas. As for the earlier workshops, the main objective was to bring together scientists from different areas of science, technology and engineering, to comparatively discuss experimental facts and theoretical predictions on the dynamical processes that occur in supercooled fluids and other disordered materials in non-equilibrium states. The underlying conceptual unity of the field provides a common background for the scientific community working in its various areas. In this edition the number of sessions was increased to cover a wider range of topics of general and current interest, in a larger number of stimulating lectures. The core of the workshop was a set of general lectures followed by more specific presentations on current issues in the main areas of the field. The sessions were in sequence devoted to: non-equilibrium dynamics, aging and secondary relaxations, biomaterials, polyamorphism and water, polymer dynamics I, complex systems, pressure-temperature scaling, thin films, nanometre length-scale studies, folded states of proteins and polymer crystals, theoretical aspects and energy landscape approaches, relaxation and heterogeneous dynamics, rheology in fluids and entangled polymers, biopolymers, and polymer dynamics II. We thank the session chairmen and all speakers for the high quality of their contributions. The structure of this issue of the proceedings follows the sequence of the oral presentations in the workshop, complemented by some papers selected from the poster sessions. Two

  3. Modeling hyperelasticity in non-equilibrium multiphase flows

    NASA Astrophysics Data System (ADS)

    Hank, Sarah; Favrie, Nicolas; Massoni, Jacques

    2017-02-01

    The aim of this article is the construction of a multiphase hyperelastic model. The Eulerian formulation of the hyperelasticity represents a system of 14 conservative partial differential equations submitted to stationary differential constraints. This model is constructed with an elegant approach where the specific energy is given in separable form. The system admits 14 eigenvalues with 7 characteristic eigenfields. The associated Riemann problem is not easy to solve because of the presence of 7 waves. The shear waves are very diffusive when dealing with the full system. In this paper, we use a splitting approach to solve the whole system using 3 sub-systems. This method reduces the diffusion of the shear waves while allowing to use a classical approximate Riemann solver. The multiphase model is obtained by adapting the discrete equations method. This approach involves an additional equation governing the evolution of a phase function relative to the presence of a phase in a cell. The system is integrated over a multiphase volume control. Finally, each phase admits its own equations system composed of three sub-systems. One and three dimensional test cases are presented.

  4. Causal kinetic equation of non-equilibrium plasmas

    NASA Astrophysics Data System (ADS)

    Treumann, Rudolf A.; Baumjohann, Wolfgang

    2017-05-01

    Statistical plasma theory far from thermal equilibrium is subject to Liouville's equation, which is at the base of the BBGKY hierarchical approach to plasma kinetic theory, from which, in the absence of collisions, Vlasov's equation follows. It is also at the base of Klimontovich's approach which includes single-particle effects like spontaneous emission. All these theories have been applied to plasmas with admirable success even though they suffer from a fundamental omission in their use of the electrodynamic equations in the description of the highly dynamic interactions in many-particle conglomerations. In the following we extend this theory to taking into account that the interaction between particles separated from each other at a distance requires the transport of information. Action needs to be transported and thus, in the spirit of the direct-interaction theory as developed by Wheeler and Feynman (1945), requires time. This is done by reference to the retarded potentials. We derive the fundamental causal Liouville equation for the phase space density of a system composed of a very large number of charged particles. Applying the approach of Klimontovich (1967), we obtain the retarded time evolution equation of the one-particle distribution function in plasmas, which replaces Klimontovich's equation in cases when the direct-interaction effects have to be taken into account. This becomes important in all systems where the distance between two points |Δq| ˜ ct is comparable to the product of observation time and light velocity, a situation which is typical in cosmic physics and astrophysics.

  5. Numerical solution of 2D wet steam flow with non-equilibrium condensation and real thermodynamics

    SciTech Connect

    Hric, V.; Halama, J.

    2015-03-10

    An approach to modeling of wet steam flow with non-equilibrium condensation phenomenon is presented. The first part of our flow model is homogeneous Euler system of transport equations for mass, momentum and total energy of wet steam (mixture). The additional second part describes liquid phase via non-homogeneous system of transport equations for moments of droplets number distribution function and relies on corrected classical nucleation theory. Moment equations are closed by linearization of droplet growth rate model. All necessary relations for thermodynamic properties of steam are provided by IAPWS set of equations. However, properties of condensate are simply modeled by liquid saturation data. Two real equations of state are implemented. Recently developed CFD formulation for entropy (does not require iteration process) and so-called IAPWS special gas equation for Helmholtz energy (one iteration loop is necessary). Flow model is validated on converging-diverging supersonic nozzle with Barschdorff geometry. Simulations were performed by in-house CFD code based on finite volume method and stiff character of equations was solved by symmetrical time operator splitting. Achieved results satisfactorily agreed with experimental data.

  6. Ultrafast energy transfer with competing channels: Non-equilibrium Förster and Modified Redfield theories.

    PubMed

    Seibt, Joachim; Mančal, Tomáš

    2017-05-07

    We derive equations of motion for the reduced density matrix of a molecular system which undergoes energy transfer dynamics competing with fast internal conversion channels. Environmental degrees of freedom of such a system have no time to relax to quasi-equilibrium in the electronic excited state of the donor molecule, and thus the conditions of validity of Förster and Modified Redfield theories in their standard formulations do not apply. We derive non-equilibrium versions of the two well-known rate theories and apply them to the case of carotenoid-chlorophyll energy transfer. Although our reduced density matrix approach does not account for the formation of vibronic excitons, it still confirms the important role of the donor ground-state vibrational states in establishing the resonance energy transfer conditions. We show that it is essential to work with a theory valid in a strong system-bath interaction regime to obtain correct dependence of the rates on donor-acceptor energy gap.

  7. Visualizing non-equilibrium lithiation of spinel oxide via in situ transmission electron microscopy

    PubMed Central

    He, Kai; Zhang, Sen; Li, Jing; Yu, Xiqian; Meng, Qingping; Zhu, Yizhou; Hu, Enyuan; Sun, Ke; Yun, Hongseok; Yang, Xiao-Qing; Zhu, Yimei; Gan, Hong; Mo, Yifei; Stach, Eric A.; Murray, Christopher B.; Su, Dong

    2016-01-01

    Spinel transition metal oxides are important electrode materials for lithium-ion batteries, whose lithiation undergoes a two-step reaction, whereby intercalation and conversion occur in a sequential manner. These two reactions are known to have distinct reaction dynamics, but it is unclear how their kinetics affects the overall electrochemical response. Here we explore the lithiation of nanosized magnetite by employing a strain-sensitive, bright-field scanning transmission electron microscopy approach. This method allows direct, real-time, high-resolution visualization of how lithiation proceeds along specific reaction pathways. We find that the initial intercalation process follows a two-phase reaction sequence, whereas further lithiation leads to the coexistence of three distinct phases within single nanoparticles, which has not been previously reported to the best of our knowledge. We use phase-field theory to model and describe these non-equilibrium reaction pathways, and to directly correlate the observed phase evolution with the battery's discharge performance. PMID:27157119

  8. Electrical characteristics of TIG arcs in argon from non-equilibrium modelling and experiment

    NASA Astrophysics Data System (ADS)

    Baeva, Margarita; Uhrlandt, Dirk; Siewert, Erwan

    2016-09-01

    Electric arcs are widely used in industrial processes so that a thorough understanding of the arc characteristics is highly important to industrial research and development. TIG welding arcs operated with pointed electrodes made of tungsten, doped with cerium oxide, have been studied in order to analyze in detail the electric field and the arc voltage. Newly developed non-equilibrium model of the arc is based on a complete diffusion treatment of particle fluxes, a generalized form of Ohm's law, and boundary conditions accounting for the space-charge sheaths within the magneto-hydrodynamic approach. Experiments have been carried out for electric currents in the range 5-200 A. The electric arc has been initiated between a WC20 cathode and a water-cooled copper plate placed 0.8 mm from each other. The arc length has been continuously increased by 0.1 mm up to 15 mm and the arc voltage has been simultaneously recorded. Modelling and experimental results will be presented and discussed.

  9. State-to-state modeling of non equilibrium low-temperature atomic plasmas

    NASA Astrophysics Data System (ADS)

    Bultel, Arnaud; Morel, Vincent; Annaloro, Julien; Druguet, Marie-Claude

    2017-03-01

    The most relevant approach leading to a thorough understanding of the behavior of non equilibrium atomic plasmas is to elaborate state-to-state models in which the mass conservation equation is applied directly to atoms or ions on their excited states. The present communication reports the elaboration of such models and the results obtained. Two situations close to each other are considered. First, the plasmas produced behind shock fronts obtained in ground test facilities (shock tubes) or during planetary atmospheric entries of spacecrafts are discussed. We focused our attention on the nitrogen case for which a complete implementation of the CoRaM-N2 collisional-radiative model has been performed in a steady one-dimensional computation code based on the Rankine-Hugoniot assumptions. Second, the plasmas produced by the interaction between an ultra short laser pulse and a tungsten sample are discussed in the framework of the elaboration of the Laser-Induced Breakdown Spectroscopy (LIBS) technique. In the present case, tungsten has been chosen in the purpose of validating an in situ experimental method able to provide the elemental composition of the divertor wall of a tokamak like WEST or ITER undergoing high energetic deuterium and tritium nuclei fluxes.

  10. On the relevance of the maximum entropy principle in non-equilibrium statistical mechanics

    NASA Astrophysics Data System (ADS)

    Auletta, Gennaro; Rondoni, Lamberto; Vulpiani, Angelo

    2017-07-01

    At first glance, the maximum entropy principle (MEP) apparently allows us to derive, or justify in a simple way, fundamental results of equilibrium statistical mechanics. Because of this, a school of thought considers the MEP as a powerful and elegant way to make predictions in physics and other disciplines, rather than a useful technical tool like others in statistical physics. From this point of view the MEP appears as an alternative and more general predictive method than the traditional ones of statistical physics. Actually, careful inspection shows that such a success is due to a series of fortunate facts that characterize the physics of equilibrium systems, but which are absent in situations not described by Hamiltonian dynamics, or generically in nonequilibrium phenomena. Here we discuss several important examples in non equilibrium statistical mechanics, in which the MEP leads to incorrect predictions, proving that it does not have a predictive nature. We conclude that, in these paradigmatic examples, an approach that uses a detailed analysis of the relevant aspects of the dynamics cannot be avoided.

  11. Modeling multiphase, multicomponent flows at the pore scale: Wetting phenomena and non-equilibrium phase behavior

    NASA Astrophysics Data System (ADS)

    Cueto-Felgueroso, L.; Fu, X.; Juanes, R.

    2016-12-01

    The description of multicomponent flows with complex phase behavior remains an open challenge in pore-scale modeling. Darcy-scale general purpose simulators assume local thermodynamic equilibrium, and perform equation-of-state-based calculations to make phase equilibrium predictions; that is, to determine the phase volume fractions and their compositions from overall component mole fractions. What remains unclear is whether the thermodynamic equilibrium assumption is valid given the flow conditions, complex structure of the pore space and characteristic time scales for flow. Diffuse-interface theories of multiphase flow have recently emerged as promising tools to understand and simulate complex processes involving the simultaneous flow of two or more immiscible fluid phases. The common goal in these approaches is to formulate thermodynamically consistent stress tensors and mesoscale balance laws, including the impact of surface tension on the momentum balance, as well as properly tracking interfacial dynamics and mass transfer. We propose a phase-field model of multiphase, multicomponent flow, which we use to address the following research questions: What is the impact of the wetting conditions at the pore scale on upscaled descriptions of multiphase flow? What is the impact of the displacement dynamics, pore space structure and wetting conditions on the phase behavior of multicomponent mixtures? We finally investigate upscaling procedures to incorporate non-equilibrium phase behavior at the continuum scale.

  12. Non-Equilibrium Dynamics of Nano-channel Confined DNA: A Brownian Dynamics Simulation Study

    NASA Astrophysics Data System (ADS)

    Bhattacharya, Aniket; Huang, Aiqun; Reisner, Walter

    We carry out Brownian dynamics (BD) simulation for a semi-flexible polymer chain characterized by a contour length Na and a persistence length lp confined inside a rectangular nanochannel to study its compression and retraction dynamics while being pushed on one end at a constant velocity by a ``nano-dozer''. We study the evolution of one dimensional concentration profile c (x , t) and the chain extension R along the channel axis (x-axis) during both the contracting as well as the retracting phases as a function of the velocity of the nano-dozer, both in steady states and in transients. Furthermore, we measure the transverse fluctuations of the chain under contraction and retraction, and the amplitude of the density profile, and compare these simulation results with those obtained from an analytical model proposed by Khorshid et al. Our studies are guided by recent experimental results by Khorshid et al. (Phys. Rev. Lett, 113, 268104 (2014)) and provide further justification to use a one dimensional PDE approach to understand the non-equilibrium dynamics of confined polymers.

  13. Non-equilibrium quantum phase transition via entanglement decoherence dynamics

    PubMed Central

    Lin, Yu-Chen; Yang, Pei-Yun; Zhang, Wei-Min

    2016-01-01

    We investigate the decoherence dynamics of continuous variable entanglement as the system-environment coupling strength varies from the weak-coupling to the strong-coupling regimes. Due to the existence of localized modes in the strong-coupling regime, the system cannot approach equilibrium with its environment, which induces a nonequilibrium quantum phase transition. We analytically solve the entanglement decoherence dynamics for an arbitrary spectral density. The nonequilibrium quantum phase transition is demonstrated as the system-environment coupling strength varies for all the Ohmic-type spectral densities. The 3-D entanglement quantum phase diagram is obtained. PMID:27713556

  14. Non-equilibrium quantum phase transition via entanglement decoherence dynamics.

    PubMed

    Lin, Yu-Chen; Yang, Pei-Yun; Zhang, Wei-Min

    2016-10-07

    We investigate the decoherence dynamics of continuous variable entanglement as the system-environment coupling strength varies from the weak-coupling to the strong-coupling regimes. Due to the existence of localized modes in the strong-coupling regime, the system cannot approach equilibrium with its environment, which induces a nonequilibrium quantum phase transition. We analytically solve the entanglement decoherence dynamics for an arbitrary spectral density. The nonequilibrium quantum phase transition is demonstrated as the system-environment coupling strength varies for all the Ohmic-type spectral densities. The 3-D entanglement quantum phase diagram is obtained.

  15. Development of a continuum/rarefied hybrid scheme for flows with thermal and chemical non-equilibrium

    NASA Astrophysics Data System (ADS)

    Michaelis, Christopher Harold

    2001-07-01

    The motion of a gas may be studied from the microscopic or macroscopic point of view. At the microscopic level, molecules are constantly moving and colliding, and occasionally reacting to form new species. The accepted model for describing gases at the microscopic level is the Boltzmann equation. In contrast, macroscopic models rely on the conservation laws, combined with constitutive relations, which approximate the molecular relaxation in a gas. The resulting set of equations, called the Navier- Stokes equations, represent an approximation to the Boltzmann equation for small non-equilibrium. For flows that are sufficiently rarefied, the Navier- Stokes equations no longer represent an accurate approximation of the Boltzmann equation. Numerical solutions of the Boltzmann equation may be obtained through the direct simulation of molecular motion. Such approaches are termed Monte Carlo, or particle methods. In principle, particle methods can be used to simulate all flows, regardless of the degree of non-equilibrium. There are many instances where neither approach is ideal. One such example is the reentry of a blunt body through the atmosphere. Ahead of the body, there is a very strong shock wave that cannot be adequately modeled by the Navier-Stokes equations, due to the degree of non- equilibrium. At the surface of the blunt body, the temperature is substantially colder than the surrounding flow, resulting in a large increase in the density next to the surface. In this region, where the flow is near- continuum, particle methods are not computationally efficient. A numerical method that utilizes the Navier-Stokes equations in regions of near-continuum flow and a particle method everywhere else is ideal. In this study, a hybrid scheme, for the efficient numerical simulation of flows with thermal and chemical non-equilibrium, is successfully demonstrated. The hybrid method was applied to extreme, high Mach number flows, where vibrational and chemical relaxation are

  16. The Osher scheme for non-equilibrium reacting flows

    NASA Technical Reports Server (NTRS)

    Suresh, Ambady; Liou, Meng-Sing

    1992-01-01

    An extension of the Osher upwind scheme to nonequilibrium reacting flows is presented. Owing to the presence of source terms, the Riemann problem is no longer self-similar and therefore its approximate solution becomes tedious. With simplicity in mind, a linearized approach which avoids an iterative solution is used to define the intermediate states and sonic points. The source terms are treated explicitly. Numerical computations are presented to demonstrate the feasibility, efficiency and accuracy of the proposed method. The test problems include a ZND (Zeldovich-Neumann-Doring) detonation problem for which spurious numerical solutions which propagate at mesh speed have been observed on coarse grids. With the present method, a change of limiter causes the solution to change from the physically correct CJ detonation solution to the spurious weak detonation solution.

  17. The Osher scheme for non-equilibrium reacting flows

    NASA Astrophysics Data System (ADS)

    Suresh, Ambady; Liou, Meng-Sing

    1992-07-01

    An extension of the Osher upwind scheme to nonequilibrium reacting flows is presented. Owing to the presence of source terms, the Riemann problem is no longer self-similar and therefore its approximate solution becomes tedious. With simplicity in mind, a linearized approach which avoids an iterative solution is used to define the intermediate states and sonic points. The source terms are treated explicitly. Numerical computations are presented to demonstrate the feasibility, efficiency and accuracy of the proposed method. The test problems include a ZND (Zeldovich-Neumann-Doring) detonation problem for which spurious numerical solutions which propagate at mesh speed have been observed on coarse grids. With the present method, a change of limiter causes the solution to change from the physically correct CJ detonation solution to the spurious weak detonation solution.

  18. Non Equilibrium Current Fluctuations in Stochastic Lattice Gases

    NASA Astrophysics Data System (ADS)

    Bertini, L.; Sole, A. De; Gabrielli, D.; Jona-Lasinio, G.; Landim, C.

    2006-04-01

    We study current fluctuations in lattice gases in the macroscopic limit extending the dynamic approach for density fluctuations developed in previous articles. More precisely, we establish a large deviation principle for a space-time fluctuation j of the empirical current with a rate functional I( j). We then estimate the probability of a fluctuation of the average current over a large time interval; this probability can be obtained by solving a variational problem for the functional I. We discuss several possible scenarios, interpreted as dynamical phase transitions, for this variational problem. They actually occur in specific models. We finally discuss the time reversal properties of I and derive a fluctuation relationship akin to the Gallavotti-Cohen theorem for the entropy production.

  19. Equivalence of Non-equilibrium Ensembles and Representation of Friction in Turbulent Flows: The Lorenz 96 Model

    NASA Astrophysics Data System (ADS)

    Gallavotti, Giovanni; Lucarini, Valerio

    2014-09-01

    We construct different equivalent non-equilibrium statistical ensembles in a simple yet instructive -degrees of freedom model of atmospheric turbulence, introduced by Lorenz in 1996. The vector field can be decomposed into an energy-conserving, time-reversible part, plus a non-time reversible part, including forcing and dissipation. We construct a modified version of the model where viscosity varies with time, in such a way that energy is conserved, and the resulting dynamics is fully time-reversible. For each value of the forcing, the statistical properties of the irreversible and reversible model are in excellent agreement, if in the latter the energy is kept constant at a value equal to the time-average realized with the irreversible model. In particular, the average contraction rate of the phase space of the time-reversible model agrees with that of the irreversible model, where instead it is constant by construction. We also show that the phase space contraction rate obeys the fluctuation relation, and we relate its finite time corrections to the characteristic time scales of the system. A local version of the fluctuation relation is explored and successfully checked. The equivalence between the two non-equilibrium ensembles extends to dynamical properties such as the Lyapunov exponents, which are shown to obey to a good degree of approximation a pairing rule. These results have relevance in motivating the importance of the chaotic hypothesis. in explaining that we have the freedom to model non-equilibrium systems using different but equivalent approaches, and, in particular, that using a model of a fluid where viscosity is kept constant is just one option, and not necessarily the only option, for describing accurately its statistical and dynamical properties.

  20. Equivalence of Non-Equilibrium Ensembles and Representation of Friction in Turbulent Flows: The Lorenz 96 Model

    NASA Astrophysics Data System (ADS)

    Lucarini, Valerio; Gallavotti, Giovanni

    2015-04-01

    We construct different equivalent non-equilibrium statistical ensembles in a simple yet instructive N-degrees of freedom model of atmospheric turbulence, introduced by Lorenz in 1996. The vector field can be decomposed into an energy-conserving, time-reversible part, plus a non-time reversible part, including forcing and dissipation. We construct a modified version of the model where viscosity varies with time, in such a way that energy is conserved, and the resulting dynamics is fully time-reversible. For each value of the forcing, the statistical properties of the irreversible and reversible model are in excellent agreement, if in the latter the energy is kept constant at a value equal to the time-average realized with the irreversible model. In particular, the average contraction rate of the phase space of the time-reversible model agrees with that of the irreversible model, where instead it is constant by construction. We also show that the phase space contraction rate obeys the fluctuation relation, and we relate its finite time corrections to the characteristic time scales of the system. A local version of the fluctuation relation is explored and successfully checked. The equivalence between the two non-equilibrium ensembles extends to dynamical properties such as the Lyapunov exponents, which are shown to obey to a good degree of approximation a pairing rule. These results have relevance in motivating the importance of the chaotic hypothesis. in explaining that we have the freedom to model non-equilibrium systems using different but equivalent approaches, and, in particular, that using a model of a fluid where viscosity is kept constant is just one option, and not necessarily the only option, for describing accurately its statistical and dynamical properties.

  1. Dynamical characterization of inactivation path in voltage-gated Na(+) ion channel by non-equilibrium response spectroscopy.

    PubMed

    Pal, Krishnendu; Gangopadhyay, Gautam

    2016-11-01

    Inactivation path of voltage gated sodium channel has been studied here under various voltage protocols as it is the main governing factor for the periodic occurrence and shape of the action potential. These voltage protocols actually serve as non-equilibrium response spectroscopic tools to study the ion channel in non-equilibrium environment. In contrast to a lot of effort in finding the crystal structure based molecular mechanism of closed-state(CSI) and open-state inactivation(OSI); here our approach is to understand the dynamical characterization of inactivation. The kinetic flux as well as energetic contribution of the closed and open- state inactivation path is compared here for voltage protocols, namely constant, pulsed and oscillating. The non-equilibrium thermodynamic quantities used in response to these voltage protocols serve as improved characterization tools for theoretical understanding which not only agrees with the previously known kinetic measurements but also predict the energetically optimum processes to sustain the auto-regulatory mechanism of action potential and the consequent inactivation steps needed. The time dependent voltage pattern governs the population of the conformational states which when couple with characteristic rate parameters, the CSI and OSI selectivity arise dynamically to control the inactivation path. Using constant, pulsed and continuous oscillating voltage protocols we have shown that during depolarization the OSI path is more favored path of inactivation however, in the hyper-polarized situation the CSI is favored. It is also shown that the re-factorisation of inactivated sodium channel to resting state occurs via CSI path. Here we have shown how the subtle energetic and entropic cost due to the change in the depolarization magnitude determines the optimum path of inactivation. It is shown that an efficient CSI and OSI dynamical profile in principle can characterize the open-state drug blocking phenomena.

  2. NON-EQUILIBRIUM HELIUM IONIZATION IN AN MHD SIMULATION OF THE SOLAR ATMOSPHERE

    SciTech Connect

    Golding, Thomas Peter; Carlsson, Mats; Leenaarts, Jorrit E-mail: mats.carlsson@astro.uio.no

    2016-02-01

    The ionization state of the gas in the dynamic solar chromosphere can depart strongly from the instantaneous statistical equilibrium commonly assumed in numerical modeling. We improve on earlier simulations of the solar atmosphere that only included non-equilibrium hydrogen ionization by performing a 2D radiation-magnetohydrodynamics simulation featuring non-equilibrium ionization of both hydrogen and helium. The simulation includes the effect of hydrogen Lyα and the EUV radiation from the corona on the ionization and heating of the atmosphere. Details on code implementation are given. We obtain helium ion fractions that are far from their equilibrium values. Comparison with models with local thermodynamic equilibrium (LTE) ionization shows that non-equilibrium helium ionization leads to higher temperatures in wavefronts and lower temperatures in the gas between shocks. Assuming LTE ionization results in a thermostat-like behavior with matter accumulating around the temperatures where the LTE ionization fractions change rapidly. Comparison of DEM curves computed from our models shows that non-equilibrium ionization leads to more radiating material in the temperature range 11–18 kK, compared to models with LTE helium ionization. We conclude that non-equilibrium helium ionization is important for the dynamics and thermal structure of the upper chromosphere and transition region. It might also help resolve the problem that intensities of chromospheric lines computed from current models are smaller than those observed.

  3. Non-equilibrium Helium Ionization in an MHD Simulation of the Solar Atmosphere

    NASA Astrophysics Data System (ADS)

    Golding, Thomas Peter; Leenaarts, Jorrit; Carlsson, Mats

    2016-02-01

    The ionization state of the gas in the dynamic solar chromosphere can depart strongly from the instantaneous statistical equilibrium commonly assumed in numerical modeling. We improve on earlier simulations of the solar atmosphere that only included non-equilibrium hydrogen ionization by performing a 2D radiation-magnetohydrodynamics simulation featuring non-equilibrium ionization of both hydrogen and helium. The simulation includes the effect of hydrogen Lyα and the EUV radiation from the corona on the ionization and heating of the atmosphere. Details on code implementation are given. We obtain helium ion fractions that are far from their equilibrium values. Comparison with models with local thermodynamic equilibrium (LTE) ionization shows that non-equilibrium helium ionization leads to higher temperatures in wavefronts and lower temperatures in the gas between shocks. Assuming LTE ionization results in a thermostat-like behavior with matter accumulating around the temperatures where the LTE ionization fractions change rapidly. Comparison of DEM curves computed from our models shows that non-equilibrium ionization leads to more radiating material in the temperature range 11-18 kK, compared to models with LTE helium ionization. We conclude that non-equilibrium helium ionization is important for the dynamics and thermal structure of the upper chromosphere and transition region. It might also help resolve the problem that intensities of chromospheric lines computed from current models are smaller than those observed.

  4. Measurements of Vibrational Non-equilibrium in Supersonic Jet Mixing and Combustion

    NASA Astrophysics Data System (ADS)

    Reising, Heath; Haller, Timothy; Clemens, Noel; Varghese, Philip

    2014-11-01

    A new experimental facility has been constructed to study the effects of thermal non-equilibrium on supersonic mixing and combustion. The facility consists of a Mach 1.5 turbulent jet issuing into an electrically heated coflow. The degree of non-equilibrium in the jet shear layer is quantified using high spectral resolution time-averaged spontaneous Raman scattering. Since the Raman spectra are time-averaged, they are susceptible to non-linear weighting effects induced by temperature fluctuations. The effect of local turbulent temperature fluctuations on the Raman fitting procedure is quantified by using spectral simulations that use the actual temperature fluctuations present in the flow measured by instantaneous Rayleigh scattering thermometry. It is shown that the temperature fluctuations are not large enough to induce significant errors in the vibrational temperature fitting results. Vibrational non-equilibrium is shown to occur in the jet shear layer, and its magnitude and trend are shown to be similar to recent large-eddy-simulation results. Since CO2 is known to cause faster vibrational relaxation of N2, a series of experiments were conducted to verify that the non-equilibrium effects could be controlled by CO2 addition. This work is being extended to reacting flows, to assess the impact of non-equilibrium on supersonic shear-layer combustion. This work was supported by the Air Force Office of Scientific Research.

  5. Dynamic non-equilibrium wall-modeling for large eddy simulation at high Reynolds numbers

    NASA Astrophysics Data System (ADS)

    Kawai, Soshi; Larsson, Johan

    2013-01-01

    A dynamic non-equilibrium wall-model for large-eddy simulation at arbitrarily high Reynolds numbers is proposed and validated on equilibrium boundary layers and a non-equilibrium shock/boundary-layer interaction problem. The proposed method builds on the prior non-equilibrium wall-models of Balaras et al. [AIAA J. 34, 1111-1119 (1996)], 10.2514/3.13200 and Wang and Moin [Phys. Fluids 14, 2043-2051 (2002)], 10.1063/1.1476668: the failure of these wall-models to accurately predict the skin friction in equilibrium boundary layers is shown and analyzed, and an improved wall-model that solves this issue is proposed. The improvement stems directly from reasoning about how the turbulence length scale changes with wall distance in the inertial sublayer, the grid resolution, and the resolution-characteristics of numerical methods. The proposed model yields accurate resolved turbulence, both in terms of structure and statistics for both the equilibrium and non-equilibrium flows without the use of ad hoc corrections. Crucially, the model accurately predicts the skin friction, something that existing non-equilibrium wall-models fail to do robustly.

  6. Modeling the Non-Equilibrium Process of the Chemical Adsorption of Ammonia on GaN(0001) Reconstructed Surfaces Based on Steepest-Entropy-Ascent Quantum Thermodynamics

    PubMed Central

    Kusaba, Akira; von Spakovsky, Michael R.; Kangawa, Yoshihiro; Kakimoto, Koichi

    2017-01-01

    Clearly understanding elementary growth processes that depend on surface reconstruction is essential to controlling vapor-phase epitaxy more precisely. In this study, ammonia chemical adsorption on GaN(0001) reconstructed surfaces under metalorganic vapor phase epitaxy (MOVPE) conditions (3Ga-H and Nad-H + Ga-H on a 2 × 2 unit cell) is investigated using steepest-entropy-ascent quantum thermodynamics (SEAQT). SEAQT is a thermodynamic-ensemble based, first-principles framework that can predict the behavior of non-equilibrium processes, even those far from equilibrium where the state evolution is a combination of reversible and irreversible dynamics. SEAQT is an ideal choice to handle this problem on a first-principles basis since the chemical adsorption process starts from a highly non-equilibrium state. A result of the analysis shows that the probability of adsorption on 3Ga-H is significantly higher than that on Nad-H + Ga-H. Additionally, the growth temperature dependence of these adsorption probabilities and the temperature increase due to the heat of reaction is determined. The non-equilibrium thermodynamic modeling applied can lead to better control of the MOVPE process through the selection of preferable reconstructed surfaces. The modeling also demonstrates the efficacy of DFT-SEAQT coupling for determining detailed non-equilibrium process characteristics with a much smaller computational burden than would be entailed with mechanics-based, microscopic-mesoscopic approaches. PMID:28809816

  7. Modeling the Non-Equilibrium Process of the Chemical Adsorption of Ammonia on GaN(0001) Reconstructed Surfaces Based on Steepest-Entropy-Ascent Quantum Thermodynamics.

    PubMed

    Kusaba, Akira; Li, Guanchen; von Spakovsky, Michael R; Kangawa, Yoshihiro; Kakimoto, Koichi

    2017-08-15

    Clearly understanding elementary growth processes that depend on surface reconstruction is essential to controlling vapor-phase epitaxy more precisely. In this study, ammonia chemical adsorption on GaN(0001) reconstructed surfaces under metalorganic vapor phase epitaxy (MOVPE) conditions (3Ga-H and Nad-H + Ga-H on a 2 × 2 unit cell) is investigated using steepest-entropy-ascent quantum thermodynamics (SEAQT). SEAQT is a thermodynamic-ensemble based, first-principles framework that can predict the behavior of non-equilibrium processes, even those far from equilibrium where the state evolution is a combination of reversible and irreversible dynamics. SEAQT is an ideal choice to handle this problem on a first-principles basis since the chemical adsorption process starts from a highly non-equilibrium state. A result of the analysis shows that the probability of adsorption on 3Ga-H is significantly higher than that on Nad-H + Ga-H. Additionally, the growth temperature dependence of these adsorption probabilities and the temperature increase due to the heat of reaction is determined. The non-equilibrium thermodynamic modeling applied can lead to better control of the MOVPE process through the selection of preferable reconstructed surfaces. The modeling also demonstrates the efficacy of DFT-SEAQT coupling for determining detailed non-equilibrium process characteristics with a much smaller computational burden than would be entailed with mechanics-based, microscopic-mesoscopic approaches.

  8. Stochastic Modeling of Non-equilibrium Bedload Transport

    NASA Astrophysics Data System (ADS)

    Kuai, Z.; Tsai, C. W.

    2009-05-01

    Traditional stochastic bed load models aimed to solve for the equilibrium bedload transport rate by matching the rate of bed erosion with the rate of deposition. Bedload transport can be in nonequilibrium even under the steady flow condition, as the quantity of moving particles in the bedload layer may vary. In a nonequilibrium condition, the interchange of sediment particles occurs not only between the bedload layer and the bed surface, but also across the interface between bedload and suspended load. The proposed approach attempts to add a new bedload-suspended load interchange layer to a stochastic bedlod transport model based on the Markov chain. The bedload transport rate is the product of the total particle volume in saltation and the average saltating velocity. We can quantify the number of saltating particles by modeling the occupancy probabilities vector of particles staying in three states (i.e., bed surface, bedload layer, and the interchange layer between the bedload and the suspended load.). The new stochastic bedload relation is validated against existing bedload model. The sudden change of flow and/or sediment condition leads to changes in the transition probabilities. The influence of sudden changes in flow-sediment properties on the bedload transport rate is investigated in this preliminary study. It is found that the neglecting the exchange process between the bedload layer and the suspended layer may lead to non-negligible errors in bedload calculation when the flow and/or sediment conditions change.

  9. THE ABUNDANCE OF MOLECULAR HYDROGEN AND ITS CORRELATION WITH MIDPLANE PRESSURE IN GALAXIES: NON-EQUILIBRIUM, TURBULENT, CHEMICAL MODELS

    SciTech Connect

    Mac Low, Mordecai-Mark; Glover, Simon C. O. E-mail: glover@uni-heidelberg.de

    2012-02-20

    Observations of spiral galaxies show a strong linear correlation between the ratio of molecular to atomic hydrogen surface density R{sub mol} and midplane pressure. To explain this, we simulate three-dimensional, magnetized turbulence, including simplified treatments of non-equilibrium chemistry and the propagation of dissociating radiation, to follow the formation of H{sub 2} from cold atomic gas. The formation timescale for H{sub 2} is sufficiently long that equilibrium is not reached within the 20-30 Myr lifetimes of molecular clouds. The equilibrium balance between radiative dissociation and H{sub 2} formation on dust grains fails to predict the time-dependent molecular fractions we find. A simple, time-dependent model of H{sub 2} formation can reproduce the gross behavior, although turbulent density perturbations increase molecular fractions by a factor of few above it. In contradiction to equilibrium models, radiative dissociation of molecules plays little role in our model for diffuse radiation fields with strengths less than 10 times that of the solar neighborhood, because of the effective self-shielding of H{sub 2}. The observed correlation of R{sub mol} with pressure corresponds to a correlation with local gas density if the effective temperature in the cold neutral medium of galactic disks is roughly constant. We indeed find such a correlation of R{sub mol} with density. If we examine the value of R{sub mol} in our local models after a free-fall time at their average density, as expected for models of molecular cloud formation by large-scale gravitational instability, our models reproduce the observed correlation over more than an order-of-magnitude range in density.

  10. Ultrafast Response of the Hubbard Model: Non-adiabatic TDDFT + DMFT versus Non-equilibrium DMFT Solution

    NASA Astrophysics Data System (ADS)

    Acharya, Shree Ram; Turkowski, Volodymyr; Rahman, Talat S.

    We study the ultrafast response of electrons in the one-band Hubbard model to an external laser-pulse perturbation by using the Non-adiabatic Time-Dependent Density Functional Theory + Dynamical Mean-Field Theory (TDDFT +DMFT) approach. The corresponding exchange-correlation kernel (XC) is obtained from the DMFT charge susceptibility by using the Quantum Monte Carlo solver for the impurity problem. Detailed analysis of the time-dependent excited charge density, the Fermi distribution function, and the spatially nonhomogeneous response (metallic domain growth), is performed for different values for the carrier density and local Coulomb repulsion. We compare the results with the corresponding non-equilibrium DMFT solutions, and demonstrate that non-adiabaticity (frequency-dependence) of the XC kernel is important in order to reproduce the non-equilibrium DMFT solution. Also, from the numerical results for the charge susceptibility, we obtain an approximate analytical expression for the XC kernel. Using this kernel, we reveal possible types of ''elementary'' excitations and the dynamics of metallic domain growth in the case of the one-band Hubbard model. Possible generalization of the approach to the multi-orbital case is discussed. Work supported in part by DOE Grant No. DOE-DE-FG02-07ER46354.

  11. Interpolative Hyperbolic Realizable Moment Closures for Non-Equilibrium Flows with Heat Transfer

    NASA Astrophysics Data System (ADS)

    Tensuda, Boone Rudy

    The predictive capabilities of a novel, 14-moment, maximum-entropy-based, interpolative closure are explored for multi-dimensional non-equilibrium flows of a monatomic gas with heat transfer. Unlike the maximum-entropy closure on which it is based, the interpolative closure provides closed-form expressions for the closing fluxes while retaining a large region of hyperbolicity. Properties of the moment system are explored via a dispersion analysis and an implicit finite-volume solution procedure is proposed. Multi-dimensional applications of the closure are then examined for several canonical non-equilibrium flow problems in order to provide an assessment of its capabilities. The predictive capabilities of the closure were found to surpass those of the 10-moment Gaussian closure. It was also found to predict interesting non-equilibrium phenomena, such as counter-gradient heat flux. The proposed implicit solver showed improved computational performance compared to the previously studied semi-implicit technique.

  12. Upwind methods for flows with non-equilibrium chemistry and thermodynamics

    NASA Astrophysics Data System (ADS)

    Grossman, B.; Cinnella, P.

    The numerical computation of gas flows with non-equilibrium thermodynamics and chemistry is considered. Several thermodynamic models are discussed, including an equilibrium model, a general non-equilibrium model and a simplified model based upon vibrational relaxation. The effects of the various models on the state equation and the homogeneity property of the Euler equations is described. Flux-splitting procedures are developed for the fully-coupled inviscid equations involving fluid dynamics, chemical production and internal energy relaxation processes. New forms of flux-vector split and flux-difference split algorithms valid for non-equilibrium flow, are embodied in a fully coupled, implicit, large-block structure. Several numerical examples in one space dimension are presented, including high-temperature nozzle flows with hydrogen-air chemistry.

  13. Non-equilibrium effects upon the non-Markovian Caldeira-Leggett quantum master equation

    SciTech Connect

    Bolivar, A.O.

    2011-05-15

    Highlights: > Classical Brownian motion described by a non-Markovian Fokker-Planck equation. > Quantization process. > Quantum Brownian motion described by a non-Markovian Caldeira-Leggett equation. > A non-equilibrium quantum thermal force is predicted. - Abstract: We obtain a non-Markovian quantum master equation directly from the quantization of a non-Markovian Fokker-Planck equation describing the Brownian motion of a particle immersed in a generic environment (e.g. a non-thermal fluid). As far as the especial case of a heat bath comprising of quantum harmonic oscillators is concerned, we derive a non-Markovian Caldeira-Leggett master equation on the basis of which we work out the concept of non-equilibrium quantum thermal force exerted by the harmonic heat bath upon the Brownian motion of a free particle. The classical limit (or dequantization process) of this sort of non-equilibrium quantum effect is scrutinized, as well.

  14. The non-equilibrium phase diagrams of flow-induced crystallization and melting of polyethylene

    NASA Astrophysics Data System (ADS)

    Wang, Zhen; Ju, Jianzhu; Yang, Junsheng; Ma, Zhe; Liu, Dong; Cui, Kunpeng; Yang, Haoran; Chang, Jiarui; Huang, Ningdong; Li, Liangbin

    2016-09-01

    Combining extensional rheology with in-situ synchrotron ultrafast x-ray scattering, we studied flow-induced phase behaviors of polyethylene (PE) in a wide temperature range up to 240 °C. Non-equilibrium phase diagrams of crystallization and melting under flow conditions are constructed in stress-temperature space, composing of melt, non-crystalline δ, hexagonal and orthorhombic phases. The non-crystalline δ phase is demonstrated to be either a metastable transient pre-order for crystallization or a thermodynamically stable phase. Based on the non-equilibrium phase diagrams, nearly all observations in flow-induced crystallization (FIC) of PE can be well understood. The interplay of thermodynamic stabilities and kinetic competitions of the four phases creates rich kinetic pathways for FIC and diverse final structures. The non-equilibrium flow phase diagrams provide a detailed roadmap for precisely processing of PE with designed structures and properties.

  15. Non-equilibrium assembly of microtubules: from molecules to autonomous chemical robots.

    PubMed

    Hess, H; Ross, Jennifer L

    2017-03-22

    Biological systems have evolved to harness non-equilibrium processes from the molecular to the macro scale. It is currently a grand challenge of chemistry, materials science, and engineering to understand and mimic biological systems that have the ability to autonomously sense stimuli, process these inputs, and respond by performing mechanical work. New chemical systems are responding to the challenge and form the basis for future responsive, adaptive, and active materials. In this article, we describe a particular biochemical-biomechanical network based on the microtubule cytoskeletal filament - itself a non-equilibrium chemical system. We trace the non-equilibrium aspects of the system from molecules to networks and describe how the cell uses this system to perform active work in essential processes. Finally, we discuss how microtubule-based engineered systems can serve as testbeds for autonomous chemical robots composed of biological and synthetic components.

  16. The non-equilibrium phase diagrams of flow-induced crystallization and melting of polyethylene

    PubMed Central

    Wang, Zhen; Ju, Jianzhu; Yang, Junsheng; Ma, Zhe; Liu, Dong; Cui, Kunpeng; Yang, Haoran; Chang, Jiarui; Huang, Ningdong; Li, Liangbin

    2016-01-01

    Combining extensional rheology with in-situ synchrotron ultrafast x-ray scattering, we studied flow-induced phase behaviors of polyethylene (PE) in a wide temperature range up to 240 °C. Non-equilibrium phase diagrams of crystallization and melting under flow conditions are constructed in stress-temperature space, composing of melt, non-crystalline δ, hexagonal and orthorhombic phases. The non-crystalline δ phase is demonstrated to be either a metastable transient pre-order for crystallization or a thermodynamically stable phase. Based on the non-equilibrium phase diagrams, nearly all observations in flow-induced crystallization (FIC) of PE can be well understood. The interplay of thermodynamic stabilities and kinetic competitions of the four phases creates rich kinetic pathways for FIC and diverse final structures. The non-equilibrium flow phase diagrams provide a detailed roadmap for precisely processing of PE with designed structures and properties. PMID:27609305

  17. The transformation dynamics towards equilibrium in non-equilibrium w/w/o double emulsions

    NASA Astrophysics Data System (ADS)

    Chao, Youchuang; Mak, Sze Yi; Shum, Ho Cheung

    2016-10-01

    We use a glass-based microfluidic device to generate non-equilibrium water-in-water-in-oil (w/w/o) double emulsions and study how they transform into equilibrium configurations. The method relies on using three immiscible liquids, with two of them from the phase-separated aqueous two-phase systems. We find that the transformation is accompanied by an expansion rim, while the characteristic transformation speed of the rim mainly depends on the interfacial tension between the innermost and middle phases, as well as the viscosity of the innermost phase when the middle phase is non-viscous. Remarkably, the viscosity of the outermost phase has little effect on the transformation speed. Our results account for the dynamics of non-equilibrium double emulsions towards their equilibrium structure and suggest a possibility to utilize the non-equilibrium drops to synthesize functional particles.

  18. Effects of grid geometry on non-equilibrium dissipation in grid turbulence

    NASA Astrophysics Data System (ADS)

    Nagata, Koji; Saiki, Teppei; Sakai, Yasuhiko; Ito, Yasumasa; Iwano, Koji

    2017-01-01

    A total of 11 grids in four families, including single- and multi-scale grids, are tested to investigate the development and decay characteristics of grid-generated turbulence. Special attention has been focused on dissipation and non-equilibrium characteristics in the decay region. A wide non-equilibrium region is observed for fractal square grids with three and four iterations. The distributions of the Taylor microscale λ, integral length scale Lu, and dissipation coefficient Cɛ show that a simple combination of large and small grids does not reproduce elongated non-equilibrium regions as realized by the fractal square grid. On the other hand, a new kind of grid, quasi-fractal grids, in which the region of the smaller fractal elements (N =2 -4 ) of the fractal square grid is replaced by regular grids, successfully reproduce a similar flow field and non-equilibrium nature to that seen in the fractal square grid case. This suggests that the combination of large square grid and inhomogeneously arranged smaller grids produces an elongated non-equilibrium region. The dissipation coefficient Cɛ is better collapsed using R e0 =t0U∞ /ν (where t0 is the thickness of the largest grid bar, U∞ the inflow velocity, and ν the kinematic viscosity) as a global/inlet Reynolds number rather than R eM =M U∞ /ν (where M is the mesh size) [P. C. Valente and J. C. Vassilicos, "Universal dissipation scaling for non-equilibrium turbulence," Phys. Rev. Lett. 108, 214503 (2012)].

  19. Non-equilibrium Ionization Modeling of Simulated Pseudostreamers in a Solar Corona Model

    NASA Astrophysics Data System (ADS)

    Shen, Chengcai; Raymond, John C.; Mikić, Zoran; Linker, Jon; Reeves, Katharine K.; Murphy, Nicholas A.

    2015-04-01

    Time-dependent ionization is important for diagnostics of coronal streamers, where the thermodynamic time scale could be shorter than the ionization or recombination time scales, and ions are therefor in non-equilibrium ionization states. In this work, we perform post-processing time-dependent ionization calculations for a three dimensional solar corona and inner heliosphere model from Predictive Sciences Inc. (Mikić & Linker 1999) to analyze the influence of non-equilibrium ionization on emission from coronal streamers. Using the plasma temperature, density, velocity and magnetic field distributions provided by the 3D MHD simulation covering the Whole Sun Month (Carrington rotation CR1913, 1996 August 22 to September 18), we calculate non-equilibrium ionization states in the region around a pseudostreamer. We then obtain the synthetic emissivities with the non-equilibrium ion populations. Under the assumption that the corona is optically thin, we also obtain intensity profiles of several emission lines. We compare our calculations with intensities of Lyman-alpha lines and OVI lines from SOHO/Ultraviolet Coronagraph Spectrometer (UVCS) observations at 14 different heights. The results show that intensity profiles of both Lyman-alpha and OVI lines match well UVCS observations at low heights. At large heights, OVI intensites are higher for non-equilibrium ionization than equilibrium ionization inside this pseudostreamer. The assumption of ionization equilibrium would lead to a underestimate of the OVI intensity by about ten percent at a height of 2 solar radii, and the difference between these two ionization cases increases with height. The intensity ratio of OVI 1032 line to OVI 1037 lines is also obtained for non-equilibrium ionization modeling.

  20. Cocrystal dissociation in the presence of water: a general approach for identifying stable cocrystal forms.

    PubMed

    Eddleston, Mark D; Madusanka, Nadeesh; Jones, William

    2014-09-01

    In previous studies, cocrystals have been shown to be susceptible to dissociation at high humidity because of differences in the solubilities of the two coformer molecules, especially when these molecules can form hydrates. Contrastingly, however, the propensity of the pharmaceutically active compound caffeine to hydrate formation is reduced by cocrystallization with oxalic acid. Here, the stability of the oxalic acid cocrystal of caffeine is investigated from a thermodynamic perspective through the use of aqueous slurries of caffeine hydrate and oxalic acid dihydrate. Conversion to the anhydrous caffeine-oxalic acid cocrystal occurred under these conditions confirming that this form is thermodynamically stable in an aqueous environment. The slurry methodology was further developed as a general approach to screening for cocrystals that are not susceptible to dissociation at high humidity. In this manner, cocrystals of the hydrate-forming molecules theophylline, carbamazepine, and piroxicam that are stable at high humidity, indefinitely avoiding hydrate formation, were identified. © 2014 Wiley Periodicals, Inc. and the American Pharmacists Association.

  1. Scattering matrix approach to the dissociative recombination of HCO+ and N2H+.

    PubMed

    Fonseca dos Santos, S; Douguet, N; Kokoouline, V; Orel, A E

    2014-04-28

    We present a theoretical study of the indirect dissociative recombination of linear polyatomic ions at low collisional energies. The approach is based on the computation of the scattering matrix just above the ionization threshold and enables the explicit determination of all diabatic electronic couplings responsible for dissociative recombination. In addition, we use the multi-channel quantum-defect theory to demonstrate the precision of the scattering matrix by reproducing accurately ab initio Rydberg state energies of the neutral molecule. We consider the molecular ions N2H(+) and HCO(+) as benchmark systems of astrophysical interest and improve former theoretical studies, which had repeatedly produced smaller cross sections than experimentally measured. Specifically, we demonstrate the crucial role of the previously overlooked stretching modes for linear polyatomic ions with large permanent dipole moment. The theoretical cross sections for both ions agree well with experimental data over a wide energy range. Finally, we consider the potential role of the HOC(+) isomer in the experimental cross sections of HCO(+) at energies below 10 meV.

  2. Correlations of the density and of the current in non-equilibrium diffusive systems

    NASA Astrophysics Data System (ADS)

    Sadhu, Tridib; Derrida, Bernard

    2016-11-01

    We use fluctuating hydrodynamics to analyze the dynamical properties in the non-equilibrium steady state of a diffusive system coupled with reservoirs. We derive the two-time correlations of the density and of the current in the hydrodynamic limit in terms of the diffusivity and the mobility. Within this hydrodynamic framework we discuss a generalization of the fluctuation dissipation relation in a non-equilibrium steady state where the response function is expressed in terms of the two-time correlations. We compare our results to an exact solution of the symmetric exclusion process. This exact solution also allows one to directly verify the fluctuating hydrodynamics equation.

  3. Non-equilibrium origin of high electrical conductivity in gallium zinc oxide thin films

    SciTech Connect

    Zakutayev, Andriy Ginley, David S.; Lany, Stephan; Perry, Nicola H.; Mason, Thomas O.

    2013-12-02

    Non-equilibrium state defines physical properties of materials in many technologies, including architectural, metallic, and semiconducting amorphous glasses. In contrast, crystalline electronic and energy materials, such as transparent conductive oxides (TCO), are conventionally thought to be in equilibrium. Here, we demonstrate that high electrical conductivity of crystalline Ga-doped ZnO TCO thin films occurs by virtue of metastable state of their defects. These results imply that such defect metastability may be important in other functional oxides. This finding emphasizes the need to understand and control non-equilibrium states of materials, in particular, their metastable defects, for the design of novel functional materials.

  4. Wall ablation of heated compound-materials into non-equilibrium discharge plasmas

    NASA Astrophysics Data System (ADS)

    Wang, Weizong; Kong, Linghan; Geng, Jinyue; Wei, Fuzhi; Xia, Guangqing

    2017-02-01

    The discharge properties of the plasma bulk flow near the surface of heated compound-materials strongly affects the kinetic layer parameters modeled and manifested in the Knudsen layer. This paper extends the widely used two-layer kinetic ablation model to the ablation controlled non-equilibrium discharge due to the fact that the local thermodynamic equilibrium (LTE) approximation is often violated as a result of the interaction between the plasma and solid walls. Modifications to the governing set of equations, to account for this effect, are derived and presented by assuming that the temperature of the electrons deviates from that of the heavy particles. The ablation characteristics of one typical material, polytetrafluoroethylene (PTFE) are calculated with this improved model. The internal degrees of freedom as well as the average particle mass and specific heat ratio of the polyatomic vapor, which strongly depends on the temperature, pressure and plasma non-equilibrium degree and plays a crucial role in the accurate determination of the ablation behavior by this model, are also taken into account. Our assessment showed the significance of including such modifications related to the non-equilibrium effect in the study of vaporization of heated compound materials in ablation controlled arcs. Additionally, a two-temperature magneto-hydrodynamic (MHD) model accounting for the thermal non-equilibrium occurring near the wall surface is developed and applied into an ablation-dominated discharge for an electro-thermal chemical launch device. Special attention is paid to the interaction between the non-equilibrium plasma and the solid propellant surface. Both the mass exchange process caused by the wall ablation and plasma species deposition as well as the associated momentum and energy exchange processes are taken into account. A detailed comparison of the results of the non-equilibrium model with those of an equilibrium model is presented. The non-equilibrium results

  5. Note: Local thermal conductivities from boundary driven non-equilibrium molecular dynamics simulations

    SciTech Connect

    Bresme, F.; Armstrong, J.

    2014-01-07

    We report non-equilibrium molecular dynamics simulations of heat transport in models of molecular fluids. We show that the “local” thermal conductivities obtained from non-equilibrium molecular dynamics simulations agree within numerical accuracy with equilibrium Green-Kubo computations. Our results support the local equilibrium hypothesis for transport properties. We show how to use the local dependence of the thermal gradients to quantify the thermal conductivity of molecular fluids for a wide range of thermodynamic states using a single simulation.

  6. Studying non-equilibrium many-body dynamics using one-dimensional Bose gases

    SciTech Connect

    Langen, Tim; Gring, Michael; Kuhnert, Maximilian; Rauer, Bernhard; Geiger, Remi; Mazets, Igor; Smith, David Adu; Schmiedmayer, Jörg; Kitagawa, Takuya; Demler, Eugene

    2014-12-04

    Non-equilibrium dynamics of isolated quantum many-body systems play an important role in many areas of physics. However, a general answer to the question of how these systems relax is still lacking. We experimentally study the dynamics of ultracold one-dimensional (1D) Bose gases. This reveals the existence of a quasi-steady prethermalized state which differs significantly from the thermal equilibrium of the system. Our results demonstrate that the dynamics of non-equilibrium quantum many-body systems is a far richer process than has been assumed in the past.

  7. Equivalence of Non-Equilibrium Ensembles and Representation of Friction in Turbulent Flows: The Lorenz 96 Model

    NASA Astrophysics Data System (ADS)

    Lucarini, Valerio; Gallavotti, Giovanni

    We construct different equivalent non-equilibrium ensembles in the Lorenz '96 model of atmospheric turbulence. The vector field can be decomposed into an energy-conserving, time-reversible part, plus a non-time reversible part, including forcing and dissipation. We construct a modified version of the model where viscosity varies with time, so that energy is conserved, and the dynamics is time-reversible. The statistical properties of the irreversible and reversible model are in excellent agreement, if in the latter the energy is kept constant at a value equal to the time-average realized with the irreversible model. The average contraction rate of the phase space of the time-reversible model agrees with that of the irreversible model, where it is constant by construction. We show that the phase space contraction rate obeys the fluctuation relation, and we interpret its finite time corrections. A local version of the fluctuation relation is explored and successfully checked. The equivalence between the two ensembles extends to the Lyapunov exponents.These results have relevance in motivating the importance of the chaotic hypothesis. in explaining that we have the freedom to model non-equilibrium systems using different but equivalent approaches.

  8. Self-assembly and transformation of hybrid nano-objects and nanostructures under equilibrium and non-equilibrium conditions

    NASA Astrophysics Data System (ADS)

    Mann, Stephen

    2009-10-01

    Understanding how chemically derived processes control the construction and organization of matter across extended and multiple length scales is of growing interest in many areas of materials research. Here we review present equilibrium and non-equilibrium self-assembly approaches to the synthetic construction of discrete hybrid (inorganic-organic) nano-objects and higher-level nanostructured networks. We examine a range of synthetic modalities under equilibrium conditions that give rise to integrative self-assembly (supramolecular wrapping, nanoscale incarceration and nanostructure templating) or higher-order self-assembly (programmed/directed aggregation). We contrast these strategies with processes of transformative self-assembly that use self-organizing media, reaction-diffusion systems and coupled mesophases to produce higher-level hybrid structures under non-equilibrium conditions. Key elements of the constructional codes associated with these processes are identified with regard to existing theoretical knowledge, and presented as a heuristic guideline for the rational design of hybrid nano-objects and nanomaterials.

  9. Tropical forests are non-equilibrium ecosystems governed by interspecific competition based on universal 1/6 niche width.

    PubMed

    Fort, Hugo; Inchausti, Pablo

    2013-01-01

    Tropical forests are mega-diverse ecosystems that display complex and non-equilibrium dynamics. However, theoretical approaches have largely focused on explaining steady-state behaviour and fitting snapshots of data. Here we show that local and niche interspecific competition can realistically and parsimoniously explain the observed non-equilibrium regime of permanent plots of nine tropical forests, in eight different countries. Our spatially-explicit model, besides predicting with accuracy the main biodiversity metrics for these plots, can also reproduce their dynamics. A central finding is that tropical tree species have a universal niche width of approximately 1/6 of the niche axis that echoes the observed widespread convergence in their functional traits enabling them to exploit similar resources and to coexist despite of having large niche overlap. This niche width yields an average ratio of 0.25 between interspecific and intraspecific competition that corresponds to an intermediate value between the extreme claims of the neutral model and the classical niche-based model of community assembly (where interspecific competition is dominant). In addition, our model can explain and yield observed spatial patterns that classical niche-based and neutral theories cannot.

  10. The dynamics of single protein molecules is non-equilibrium and self-similar over thirteen decades in time

    SciTech Connect

    Hu, Xiaohu; Hong, Liang; Smith, Micholas Dean; Neusius, Thomas; Cheng, Xiaolin; Smith, Jeremy C.

    2015-11-23

    Here, internal motions of proteins are essential to their function. The time dependence of protein structural fluctuations is highly complex, manifesting subdiffusive, non-exponential behavior with effective relaxation times existing over many decades in time, from ps up to ~102s (refs 1-4). Here, using molecular dynamics simulations, we show that, on timescales from 10–12 to 10–5s, motions in single proteins are self-similar, non-equilibrium and exhibit ageing. The characteristic relaxation time for a distance fluctuation, such as inter-domain motion, is observation-time-dependent, increasing in a simple, power-law fashion, arising from the fractal nature of the topology and geometry of the energy landscape explored. Diffusion over the energy landscape follows a non-ergodic continuous time random walk. Comparison with single-molecule experiments suggests that the non-equilibrium self-similar dynamical behavior persists up to timescales approaching the in vivo lifespan of individual protein molecules.

  11. The dynamics of single protein molecules is non-equilibrium and self-similar over thirteen decades in time

    DOE PAGES

    Hu, Xiaohu; Hong, Liang; Smith, Micholas Dean; ...

    2015-11-23

    Here, internal motions of proteins are essential to their function. The time dependence of protein structural fluctuations is highly complex, manifesting subdiffusive, non-exponential behavior with effective relaxation times existing over many decades in time, from ps up to ~102s (refs 1-4). Here, using molecular dynamics simulations, we show that, on timescales from 10–12 to 10–5s, motions in single proteins are self-similar, non-equilibrium and exhibit ageing. The characteristic relaxation time for a distance fluctuation, such as inter-domain motion, is observation-time-dependent, increasing in a simple, power-law fashion, arising from the fractal nature of the topology and geometry of the energy landscape explored.more » Diffusion over the energy landscape follows a non-ergodic continuous time random walk. Comparison with single-molecule experiments suggests that the non-equilibrium self-similar dynamical behavior persists up to timescales approaching the in vivo lifespan of individual protein molecules.« less

  12. Heat and mass transfer in reacting mixtures: Molecular dynamics and kinetic theory approaches

    NASA Astrophysics Data System (ADS)

    Kustova, E.; Nabokova, M.; Kjelstrup, S.; Bedeaux, D.

    2016-11-01

    Transport properties of a binary H2-H mixture with strongly-non-equilibrium dissociation reaction are studied on the basis of two approaches: kinetic theory and molecular dynamics. The gas in the thermostat under the action of temperature gradient is considered. Mass diffusive and measurable heat flux are obtained in the non-equilibrium molecular dynamics simulations; the transport coefficients are extracted from the fluxes using the constitutive equations given by irreversible thermodynamics. For the same conditions, the transport coefficients and the corresponding fluxes are calculated using the modified Chapman-Enskog method for the rarefied flows with non-equilibrium chemical reactions. While the qualitative agreement between the results obtained using the two approaches is found, quantitative differences are however noticeable. The discrepancy in the heat conductivity coefficient is not large but is significant for diffusion coefficients. Possible sources of discrepancies are discussed.

  13. S H bond dissociation enthalpies: The importance of a complete basis set approach

    NASA Astrophysics Data System (ADS)

    Cabral do Couto, P.; Costa Cabral, Benedito J.; Martinho Simões, José A.

    2006-04-01

    The S-H homolytic bond dissociation enthalpies (BDEs) for several compounds of reference were estimated by different theoretical methods including CCSD(T), CBS-QB3, and the multi-coefficient extrapolated density functional theory multi-level approaches, MCG3-MPWB and MCG3-TS. Emphasis was placed on the importance of extrapolating theoretical BDEs to complete basis set. A very good agreement between S-H BDEs from CCSD(T) calculations and experiment is observed when a simple dual extrapolation scheme to complete basis set proposed by Truhlar is adopted. For thiophenol, our CCSD(T) estimate for the S-H BDE (347.2 kJ mol -1) supports a recent experimental value obtained from time-resolved photoacoustic calorimetry (349 ± 5 kJ mol -1).

  14. A novel approach to collision-induced dissociation (CID) for ion mobility-mass spectrometry experiments.

    PubMed

    Becker, Christopher; Fernandez-Lima, Francisco A; Gillig, Kent J; Russell, William K; Cologna, Stephanie M; Russell, David H

    2009-06-01

    Collision induced dissociation (CID) combined with matrix assisted laser desorption ionization-ion mobility-mass spectrometry (MALDI-IM-MS) is described. In this approach, peptide ions are separated on the basis of mobility in a 15 cm drift cell. Following mobility separation, the ions exit the drift cell and enter a 5 cm vacuum interface with a high field region (up to 1000 V/cm) to undergo collisional activation. Ion transmission and ion kinetic energies in the interface are theoretically evaluated accounting for the pressure gradient, interface dimensions, and electric fields. Using this CID technique, we have successfully fragmented and sequenced a number of model peptide ions as well as peptide ions obtained by a tryptic digest. This instrument configuration allows for the simultaneous determination of peptide mass, peptide-ion sequence, and collision-cross section of MALDI-generated ions, providing information critical to the identification of unknown components in complex proteomic samples.

  15. Exciton dissociation in the presence of phonons: A reduced hierarchy equations of motion approach

    SciTech Connect

    Yao, Yao; Yang, Wenchao; Zhao, Yang

    2014-03-14

    Combining the reduced hierarchy equations of motion (HEOM) approach with the Wigner-function formalism, we investigate nonperturbatively exciton dissociation under the influence of a phonon bath in an organic heterojunction. The exciton is modeled by an electron-hole pair with the electron moving in the presence of both an external electric field and the Coulomb attraction potential from the hole. In the absence of a phonon bath, calculated HEOM results reproduce those from the Onsager-Braun theory in weak electric fields. In the presence of a phonon bath, substantial deviations from the Onsager-Braun theory are found, signaling phonon-induced quantum effects. Furthermore, time evolution of the spatial current distribution is examined, and an initial spike followed by a polarity change of the transient photocurrent have been recovered.

  16. A time-accurate implicit method for chemical non-equilibrium flows at all speeds

    NASA Technical Reports Server (NTRS)

    Shuen, Jian-Shun

    1992-01-01

    A new time accurate coupled solution procedure for solving the chemical non-equilibrium Navier-Stokes equations over a wide range of Mach numbers is described. The scheme is shown to be very efficient and robust for flows with velocities ranging from M less than or equal to 10(exp -10) to supersonic speeds.

  17. Review Of Non-Equilibrium Atmospheric Entry In-Flight Instrumentations

    NASA Astrophysics Data System (ADS)

    Hendrich, Georg; Fertig, Markus; Fasoulas, Stefanos; Lohle, Stefan; Lein, Sebastian; Preci, Arianit; Steinbeck, Andreas

    2011-05-01

    The paper gives a very brief overview on non- equilibrium in-flight instrumentation. However, the limitation of the paper length leads to the fact that the authors concentrate on examples in which they were involved either by participating in the development of the instrumentation or by the performance of data analysis.

  18. Numerical modelling of non-equilibrium graded sediment transport in a curved open channel

    NASA Astrophysics Data System (ADS)

    Bui, Minh Duc; Rutschmann, Peter

    2010-06-01

    The computer code FAST3D has been developed to calculate flow and sediment transport in open channels. In the code, the flow field is calculated by solving the full Reynolds-averaged Navier-Stokes equations with k-ɛ turbulence model; the bed-load transport is simulated with a non-equilibrium model containing an important parameter, the so-called non-equilibrium adaptation length, which characterizes the distance for sediment to adjust from a non-equilibrium state to an equilibrium state; the bed deformation is obtained from an overall mass-balance equation for sediment transport. The governing equations are solved numerically with a finite volume method on an adaptive, non-staggered grid. The former model assumed uniform bed material. In order to take into account the influence of grain-size distribution of the bed-surface on the evolution of the bed topography and consequently also on the flow field, a sediment transport module has been presently developed by the authors at the Institute of Hydraulic and Water Resources Engineering, Technische Universität München, Germany, for fractional sediment transport using a multiple layer model. This paper presents the numerical results for sediment sorting and the bed deformation in a curved alluvial channel under unsteady-flow conditions according to Yen and Lee (1995). The calculations were compared with data from laboratory measurements. Further, the sensitivity of the simulated results to the non-equilibrium adaptation length is investigated.

  19. Rheology modulated non-equilibrium fluctuations in time-dependent diffusion processes

    NASA Astrophysics Data System (ADS)

    Maity, Debonil; Bandopadhyay, Aditya; Chakraborty, Suman

    2016-11-01

    The effect of non-Newtonian rheology, manifested through a viscoelastic linearized Maxwell model, on the time-dependent non-equilibrium concentration fluctuations due to free diffusion as well as thermal diffusion of a species is analyzed theoretically. Contrary to the belief that non-equilibrium Rayleigh line is not influenced by viscoelastic effects, through rigorous calculations, we put forward the fact that viscoelastic effects do influence the non-equilibrium Rayleigh line, while the effects are absent for the equilibrium scenario. The non-equilibrium process is quantified through the concentration fluctuation auto-correlation function, also known as the structure factor. The analysis reveals that the effect of rheology is prominent for both the cases of free diffusion and thermal diffusion at long times, where the influence of rheology dictates not only the location of the peaks in concentration dynamic structure factors, but also the magnitudes; such peaks in dynamic structure factors are absent in the case of Newtonian fluid. At smaller times, for the case of free diffusion, presence of time-dependent peak(s) are observed, which are weakly dependent on the influence of rheology, a phenomenon which is absent in the case of thermal diffusion. Different regimes of the frequency dependent overall dynamic structure factor, depending on the interplay of the fluid relaxation time and momentum diffusivity, are evaluated. The static structure factor is not affected to a great extent for the case of free-diffusion and is unaffected for the case of thermal diffusion.

  20. Comparison of equilibrium and non-equilibrium distribution coefficients for the human drug carbamazepine

    USDA-ARS?s Scientific Manuscript database

    The distribution coefficient (KD) for the human drug carbamazepine was measured using a non-equilibrium technique. Repacked soil columns were prepared using an Airport silt loam (Typic Natrustalf) with an average organic matter content of 2.45%. Carbamazepine solutions were then leached through th...

  1. Jet quenching and gluon to hadron fragmentation function in non-equilibrium QCD at RHIC and LHC

    NASA Astrophysics Data System (ADS)

    Nayak, Gouranga C.

    2017-01-01

    Theoretical understanding of the observed jet quenching measurements at RHIC and LHC is challenging in QCD because it requires understanding of parton to hadron fragmentation function in non-equilibrium QCD. In this paper, by using closed-time path integral formalism, we derive the gauge invariant definition of the gluon to hadron fragmentation function in non-equilibrium QCD which is consistent with factorization theorem in non-equilibrium QCD from first principles.

  2. A numerical model of non-equilibrium thermal plasmas. I. Transport properties

    SciTech Connect

    Zhang XiaoNing; Xia WeiDong; Li HePing; Murphy, Anthony B.

    2013-03-15

    A self-consistent and complete numerical model for investigating the fundamental processes in a non-equilibrium thermal plasma system consists of the governing equations and the corresponding physical properties of the plasmas. In this paper, a new kinetic theory of the transport properties of two-temperature (2-T) plasmas, based on the solution of the Boltzmann equation using a modified Chapman-Enskog method, is presented. This work is motivated by the large discrepancies between the theories for the calculation of the transport properties of 2-T plasmas proposed by different authors in previous publications. In the present paper, the coupling between electrons and heavy species is taken into account, but reasonable simplifications are adopted, based on the physical fact that m{sub e}/m{sub h} Much-Less-Than 1, where m{sub e} and m{sub h} are, respectively, the masses of electrons and heavy species. A new set of formulas for the transport coefficients of 2-T plasmas is obtained. The new theory has important physical and practical advantages over previous approaches. In particular, the diffusion coefficients are complete and satisfy the mass conversation law due to the consideration of the coupling between electrons and heavy species. Moreover, this essential requirement is satisfied without increasing the complexity of the transport coefficient formulas. Expressions for the 2-T combined diffusion coefficients are obtained. The expressions for the transport coefficients can be reduced to the corresponding well-established expressions for plasmas in local thermodynamic equilibrium for the case in which the electron and heavy-species temperatures are equal.

  3. Construction of Low Dissipative High Order Well-Balanced Filter Schemes for Non-Equilibrium Flows

    NASA Technical Reports Server (NTRS)

    Wang, Wei; Yee, H. C.; Sjogreen, Bjorn; Magin, Thierry; Shu, Chi-Wang

    2009-01-01

    The goal of this paper is to generalize the well-balanced approach for non-equilibrium flow studied by Wang et al. [26] to a class of low dissipative high order shock-capturing filter schemes and to explore more advantages of well-balanced schemes in reacting flows. The class of filter schemes developed by Yee et al. [30], Sjoegreen & Yee [24] and Yee & Sjoegreen [35] consist of two steps, a full time step of spatially high order non-dissipative base scheme and an adaptive nonlinear filter containing shock-capturing dissipation. A good property of the filter scheme is that the base scheme and the filter are stand alone modules in designing. Therefore, the idea of designing a well-balanced filter scheme is straightforward, i.e., choosing a well-balanced base scheme with a well-balanced filter (both with high order). A typical class of these schemes shown in this paper is the high order central difference schemes/predictor-corrector (PC) schemes with a high order well-balanced WENO filter. The new filter scheme with the well-balanced property will gather the features of both filter methods and well-balanced properties: it can preserve certain steady state solutions exactly; it is able to capture small perturbations, e.g., turbulence fluctuations; it adaptively controls numerical dissipation. Thus it shows high accuracy, efficiency and stability in shock/turbulence interactions. Numerical examples containing 1D and 2D smooth problems, 1D stationary contact discontinuity problem and 1D turbulence/shock interactions are included to verify the improved accuracy, in addition to the well-balanced behavior.

  4. How Long Does it Take for a Non-Equilibrium System to Reach a Quasi-Thermal State?

    NASA Astrophysics Data System (ADS)

    Fotso, Herbert F.; Mikelsons, Karlis; Freericks, James K.

    2013-03-01

    We study the relaxation of an interacting system driven out of equilibrium by a constant electric field using Non-Equilibrium Dynamical Mean Field Theory. We use on the one hand a DMFT method which solves the steady state problem directly in frequency space, and on the other hand, a DMFT method that follows the transient time evolution of the system on the Keldysh contour. The system is described by the Falicov Kimball model which we follow across the metal - insulator transition. We find that the retarded Green's function quickly approaches that of the steady state while the lesser Green's function and, as a result the distribution function, slowly approach that of a steady state with an increased temperature due to the additional energy transferred to the system by the electric field. Analyses of this type can help understand the results of some experiments involving ultracold atomic gases.

  5. Analysis of non-equilibrium phenomena in inductively coupled plasma generators

    NASA Astrophysics Data System (ADS)

    Zhang, W.; Lani, A.; Panesi, M.

    2016-07-01

    This work addresses the modeling of non-equilibrium phenomena in inductively coupled plasma discharges. In the proposed computational model, the electromagnetic induction equation is solved together with the set of Navier-Stokes equations in order to compute the electromagnetic and flow fields, accounting for their mutual interaction. Semi-classical statistical thermodynamics is used to determine the plasma thermodynamic properties, while transport properties are obtained from kinetic principles, with the method of Chapman and Enskog. Particle ambipolar diffusive fluxes are found by solving the Stefan-Maxwell equations with a simple iterative method. Two physico-mathematical formulations are used to model the chemical reaction processes: (1) A Local Thermodynamics Equilibrium (LTE) formulation and (2) a thermo-chemical non-equilibrium (TCNEQ) formulation. In the TCNEQ model, thermal non-equilibrium between the translational energy mode of the gas and the vibrational energy mode of individual molecules is accounted for. The electronic states of the chemical species are assumed in equilibrium with the vibrational temperature, whereas the rotational energy mode is assumed to be equilibrated with translation. Three different physical models are used to account for the coupling of chemistry and energy transfer processes. Numerical simulations obtained with the LTE and TCNEQ formulations are used to characterize the extent of non-equilibrium of the flow inside the Plasmatron facility at the von Karman Institute. Each model was tested using different kinetic mechanisms to assess the sensitivity of the results to variations in the reaction parameters. A comparison of temperatures and composition profiles at the outlet of the torch demonstrates that the flow is in non-equilibrium for operating conditions characterized by pressures below 30 000 Pa, frequency 0.37 MHz, input power 80 kW, and mass flow 8 g/s.

  6. Analysis of non-equilibrium phenomena in inductively coupled plasma generators

    SciTech Connect

    Zhang, W.; Panesi, M.; Lani, A.

    2016-07-15

    This work addresses the modeling of non-equilibrium phenomena in inductively coupled plasma discharges. In the proposed computational model, the electromagnetic induction equation is solved together with the set of Navier-Stokes equations in order to compute the electromagnetic and flow fields, accounting for their mutual interaction. Semi-classical statistical thermodynamics is used to determine the plasma thermodynamic properties, while transport properties are obtained from kinetic principles, with the method of Chapman and Enskog. Particle ambipolar diffusive fluxes are found by solving the Stefan-Maxwell equations with a simple iterative method. Two physico-mathematical formulations are used to model the chemical reaction processes: (1) A Local Thermodynamics Equilibrium (LTE) formulation and (2) a thermo-chemical non-equilibrium (TCNEQ) formulation. In the TCNEQ model, thermal non-equilibrium between the translational energy mode of the gas and the vibrational energy mode of individual molecules is accounted for. The electronic states of the chemical species are assumed in equilibrium with the vibrational temperature, whereas the rotational energy mode is assumed to be equilibrated with translation. Three different physical models are used to account for the coupling of chemistry and energy transfer processes. Numerical simulations obtained with the LTE and TCNEQ formulations are used to characterize the extent of non-equilibrium of the flow inside the Plasmatron facility at the von Karman Institute. Each model was tested using different kinetic mechanisms to assess the sensitivity of the results to variations in the reaction parameters. A comparison of temperatures and composition profiles at the outlet of the torch demonstrates that the flow is in non-equilibrium for operating conditions characterized by pressures below 30 000 Pa, frequency 0.37 MHz, input power 80 kW, and mass flow 8 g/s.

  7. Leaching from MSWI bottom ash: evaluation of non-equilibrium in column percolation experiments.

    PubMed

    Hyks, Jiri; Astrup, Thomas; Christensen, Thomas H

    2009-02-01

    Impacts of non-equilibrium on results of percolation experiments on municipal solid waste incineration (MSWI) bottom ash were investigated. Three parallel column experiments were performed: two columns with undisturbed percolation and one column with two sets of 1-month-long flow interruptions applied at liquid-to-solid (L/S) ratios of L/S 2L/kg and 12L/kg, respectively. Concentrations of Na, K, Cl(-), Ca, Si, SO(4)(2-), Al, Cu, Ni, Mo, Ba, Pb, Zn, and dissolved organic carbon (DOC) were monitored throughout the entire leaching period; geochemical modeling was used to identify non-equilibrium-induced changes in the solubility control. Despite both physical and chemical non-equilibrium, the columns were found to provide adequate information for readily soluble compounds (i.e., Na, Cl(-), and K) and solubility-controlled elements (i.e., Ca, SO(4)(2-), Ba, Si, Al, Zn, and Pb). The leaching of Cu and Ni was shown to depend strongly on DOC leaching, which was likely affected by physical non-equilibrium during flow interruptions. Consequently, the leaching of Cu and Ni in the undisturbed columns was shown to be by about one order of magnitude lower compared with the interrupted column. The results indicate that the leaching of DOC-related metals in laboratory column experiments may be considerably underestimated compared with full-scale scenarios in which the impacts from non-equilibrium may be significantly lower. The leaching of Mo (or MoO(4)(2-)) may be controlled solely by its availability in the mobile zone, which in turn appeared to be controlled by diffusion from the stagnant zone; no Mo controlling minerals were predicted by the geochemical modeling.

  8. An ab initio chemical reaction model for the direct simulation Monte Carlo study of non-equilibrium nitrogen flows

    NASA Astrophysics Data System (ADS)

    Mankodi, T. K.; Bhandarkar, U. V.; Puranik, B. P.

    2017-08-01

    A new ab initio based chemical model for a Direct Simulation Monte Carlo (DSMC) study suitable for simulating rarefied flows with a high degree of non-equilibrium is presented. To this end, Collision Induced Dissociation (CID) cross sections for N2+N2→N2+2 N are calculated and published using a global complete active space self-consistent field-complete active space second order perturbation theory N4 potential energy surface and quasi-classical trajectory algorithm for high energy collisions (up to 30 eV). CID cross sections are calculated for only a selected set of ro-vibrational combinations of the two nitrogen molecules, and a fitting scheme based on spectroscopic weights is presented to interpolate the CID cross section for all possible ro-vibrational combinations. The new chemical model is validated by calculating equilibrium reaction rate coefficients that can be compared well with existing shock tube and computational results. High-enthalpy hypersonic nitrogen flows around a cylinder in the transition flow regime are simulated using DSMC to compare the predictions of the current ab initio based chemical model with the prevailing phenomenological model (the total collision energy model). The differences in the predictions are discussed.

  9. An ab initio chemical reaction model for the direct simulation Monte Carlo study of non-equilibrium nitrogen flows.

    PubMed

    Mankodi, T K; Bhandarkar, U V; Puranik, B P

    2017-08-28

    A new ab initio based chemical model for a Direct Simulation Monte Carlo (DSMC) study suitable for simulating rarefied flows with a high degree of non-equilibrium is presented. To this end, Collision Induced Dissociation (CID) cross sections for N2+N2→N2+2N are calculated and published using a global complete active space self-consistent field-complete active space second order perturbation theory N4 potential energy surface and quasi-classical trajectory algorithm for high energy collisions (up to 30 eV). CID cross sections are calculated for only a selected set of ro-vibrational combinations of the two nitrogen molecules, and a fitting scheme based on spectroscopic weights is presented to interpolate the CID cross section for all possible ro-vibrational combinations. The new chemical model is validated by calculating equilibrium reaction rate coefficients that can be compared well with existing shock tube and computational results. High-enthalpy hypersonic nitrogen flows around a cylinder in the transition flow regime are simulated using DSMC to compare the predictions of the current ab initio based chemical model with the prevailing phenomenological model (the total collision energy model). The differences in the predictions are discussed.

  10. Radicals and Non-Equilibrium Processes in Low-Temperature Plasmas

    NASA Astrophysics Data System (ADS)

    Petrović, Zoran; Mason, Nigel; Hamaguchi, Satoshi; Radmilović-Radjenović, Marija

    2007-06-01

    Serbian Academy of Sciences and Arts and Institute of Physics, Belgrade. Each Symposium has sought to highlight a key topic of plasma research and the 5th EU - Japan symposium explored the role of Radicals and Non-Equilibrium Processes in Low-Temperature Plasmas since these are key elements of plasma processing. Other aspects of technologies for manufacturing integrated circuits were also considered. Unlike bio-medicine and perhaps politics, in plasma processing free radicals are `good radicals' but their kinetics are difficult to understand since there remains little data on their collisions with electrons and ions. One of the goals of the symposium was to facilitate communication between experimentalists and theorists in binary collision physics with plasma modellers and practitioners of plasma processing in order to optimize efforts to provide much needed data for both molecules and radicals of practical importance. The non-equilibrium nature of plasmas is critical in the efficient manufacturing of high resolution structures by anisotropic plasma etching on Si wafers since they allow separate control of the directionality and energy of ions and provide a high level of separation between the mean energies of electrons and ions. As nanotechnologies become practical, plasma processing may play a key role, not only in manufacturing of integrated circuits, but also for self-organization of massively parallel manufacturing of nanostructures. In this Symposium the key issues that are hindering the development of such new, higher resolution technologies were discussed and some possible solutions were proposed. In particular, damage control, fast neutral etching, processes at surface and modeling of profiles were addressed in several of the lectures. A wide range of topics are covered in this book including atomic and molecular collision physics - primarily focused towards formation and analysis of radicals, basic swarm data and breakdown kinetics, basic kinetics of RF and DC

  11. On determining continuum quantities of non-equilibrium processes via molecular dynamics simulations

    NASA Astrophysics Data System (ADS)

    Fu, Yao

    In this dissertation, a high-fidelity atomistic-to-continuum link for highly non-equilibrium processes has been established by making several modifications to Hardy's theory. Although Hardy's thermomechanical quantities were derived analytically to conserve mass, momentum and energy, they have not been rigorously tested and validated numerically in the past. Hence the first task was to investigate the effectiveness of ensemble averaging in removing thermal fluctuations and compare with conventional time averaging for fcc crystals simulated using both equilibrium and non-equilibrium molecular dynamics (MD) simulations, where the non-equilibrium process was introduced by a shock impact. It has been found that the ensemble averaging has better convergence than time averaging due to the statistical independence of the thermomechanical quantities computed using ensemble averaging. The second task was to test the validity of Hardy's theory by checking if it is able to conserve mass, momentum and energy numerically. A few highly non-equilibrium processes were simulated using MD, including Gaussian wave and shock impact propagation in 1D and 3D fcc crystals. Based on the test results, a new normalization rule has been proposed so that the computed thermomechanical quantities can conserve the fundamental properties more accurately. To a large extent, Hardy's theory has been found to be valid regardless of the width of the localization function, the interatomic potential and crystal structure, and with and without ensemble averaging. To further test the validity of Hardy's theory for more complex non-equilibrium processes, where plastic deformation is accomplished through dislocation glide and slip band emission, a crack propagation problem in iron crystal with a pre-created center crack is simulated using MD. The computed Hardy's thermomechanical quantities can generally conserve mass, momentum and energy. Exceptions have been found around the crack region, where the

  12. Dissociable Hippocampal and Amygdalar D1-like receptor contribution to Discriminated Pavlovian conditioned approach learning

    PubMed Central

    Andrzejewski, Matthew E; Ryals, Curtis

    2016-01-01

    Pavlovian conditioning is an elementary form of reward-related behavioral adaptation. The mesolimbic dopamine system is widely considered to mediate critical aspects of reward-related learning. For example, initial acquisition of positively-reinforced operant behavior requires dopamine (DA) D1 receptor (D1R) activation in the basolateral amygdala (BLA), central nucleus of the amygdala (CeA), and the ventral subiculum (vSUB). However, the role of D1R activation in these areas on appetitive, non-drug-related, Pavlovian learning is not currently known. In separate experiments, microinfusions of the D1-like receptor antagonist SCH-23390 (3.0 nmol/0.5 μL per side) into the amygdala and subiculum preceded discriminated Pavlovian conditioned approach (dPCA) training sessions. D1-like antagonism in all three structures impaired the acquisition of discriminated approach, but had no effect on performance after conditioning was asymptotic. Moreover, dissociable effects of D1-like antagonism in the three structures on components of discriminated responding were obtained. Lastly, the lack of latent inhibition in drug-treated groups may elucidate the role of D1-like in reward-related Pavlovian conditioning. The present data suggest a role for the D1 receptors in the amygdala and hippocampus in learning the significance of conditional stimuli, but not in the expression of conditional responses. PMID:26632336

  13. Dissociable hippocampal and amygdalar D1-like receptor contribution to discriminated Pavlovian conditioned approach learning.

    PubMed

    Andrzejewski, Matthew E; Ryals, Curtis

    2016-02-15

    Pavlovian conditioning is an elementary form of reward-related behavioral adaptation. The mesolimbic dopamine system is widely considered to mediate critical aspects of reward-related learning. For example, initial acquisition of positively-reinforced operant behavior requires dopamine (DA) D1 receptor (D1R) activation in the basolateral amygdala (BLA), central nucleus of the amygdala (CeA), and the ventral subiculum (vSUB). However, the role of D1R activation in these areas on appetitive, non-drug-related, Pavlovian learning is not currently known. In separate experiments, microinfusions of the D1-like receptor antagonist SCH-23390 (3.0 nmol/0.5 μL per side) into the amygdala and subiculum preceded discriminated Pavlovian conditioned approach (dPCA) training sessions. D1-like antagonism in all three structures impaired the acquisition of discriminated approach, but had no effect on performance after conditioning was asymptotic. Moreover, dissociable effects of D1-like antagonism in the three structures on components of discriminated responding were obtained. Lastly, the lack of latent inhibition in drug-treated groups may elucidate the role of D1-like in reward-related Pavlovian conditioning. The present data suggest a role for the D1 receptors in the amygdala and hippocampus in learning the significance of conditional stimuli, but not in the expression of conditional responses.

  14. Non-equilibrium thermodynamics theory of econometric source discovery for large data analysis

    NASA Astrophysics Data System (ADS)

    van Bergem, Rutger; Jenkins, Jeffrey; Benachenhou, Dalila; Szu, Harold

    2014-05-01

    Almost all consumer and firm transactions are achieved using computers and as a result gives rise to increasingly large amounts of data available for analysts. The gold standard in Economic data manipulation techniques matured during a period of limited data access, and the new Large Data Analysis (LDA) paradigm we all face may quickly obfuscate most tools used by Economists. When coupled with an increased availability of numerous unstructured, multi-modal data sets, the impending 'data tsunami' could have serious detrimental effects for Economic forecasting, analysis, and research in general. Given this reality we propose a decision-aid framework for Augmented-LDA (A-LDA) - a synergistic approach to LDA which combines traditional supervised, rule-based Machine Learning (ML) strategies to iteratively uncover hidden sources in large data, the artificial neural network (ANN) Unsupervised Learning (USL) at the minimum Helmholtz free energy for isothermal dynamic equilibrium strategies, and the Economic intuitions required to handle problems encountered when interpreting large amounts of Financial or Economic data. To make the ANN USL framework applicable to economics we define the temperature, entropy, and energy concepts in Economics from non-equilibrium molecular thermodynamics of Boltzmann viewpoint, as well as defining an information geometry, on which the ANN can operate using USL to reduce information saturation. An exemplar of such a system representation is given for firm industry equilibrium. We demonstrate the traditional ML methodology in the economics context and leverage firm financial data to explore a frontier concept known as behavioral heterogeneity. Behavioral heterogeneity on the firm level can be imagined as a firm's interactions with different types of Economic entities over time. These interactions could impose varying degrees of institutional constraints on a firm's business behavior. We specifically look at behavioral

  15. Temperature control in molecular dynamic simulations of non-equilibrium processes

    NASA Astrophysics Data System (ADS)

    Toton, Dawid; Lorenz, Christian D.; Rompotis, Nikolaos; Martsinovich, Natalia; Kantorovich, Lev

    2010-02-01

    Thermostats are often used in various condensed matter problems, e.g. when a biological molecule undergoes a transformation in a solution, a crystal surface is irradiated with energetic particles, a crack propagates in a solid upon applied stress, two surfaces slide with respect to each other, an excited local phonon dissipates its energy into a crystal bulk, and so on. In all of these problems, as well as in many others, there is an energy transfer between different local parts of the entire system kept at a constant temperature. Very often, when modelling such processes using molecular dynamics simulations, thermostatting is done using strictly equilibrium approaches serving to describe the NVT ensemble. In this paper we critically discuss the applicability of such approaches to non-equilibrium problems, including those mentioned above, and stress that the correct temperature control can only be achieved if the method is based on the generalized Langevin equation (GLE). Specifically, we emphasize that a meaningful compromise between computational efficiency and a physically appropriate implementation of the NVT thermostat can be achieved, at least for solid state and surface problems, if the so-called stochastic boundary conditions (SBC), recently derived from the GLE (Kantorovich and Rompotis 2008 Phys. Rev. B 78 094305), are used. For SBC, the Langevin thermostat is only applied to the outer part of the simulated fragment of the entire system which borders the surrounding environment (not considered explicitly) serving as a heat bath. This point is illustrated by comparing the performance of the SBC and some of the equilibrium thermostats in two problems: (i) irradiation of the Si(001) surface with an energetic CaF2 molecule using an ab initio density functional theory based method, and (ii) the tribology of two amorphous SiO2 surfaces coated with self-assembled monolayers of methyl-terminated hydrocarbon alkoxylsilane molecules using a classical atomistic

  16. Non-equilibrium modeling of UV laser induced plasma on a copper target in the presence of Cu{sup 2+}

    SciTech Connect

    Ait Oumeziane, Amina Liani, Bachir; Parisse, Jean-Denis

    2016-03-15

    This work is a contribution to the understanding of UV laser ablation of a copper sample in the presence of Cu{sup 2+} species as well as electronic non-equilibrium in the laser induced plasma. This particular study extends a previous paper and develops a 1D hydrodynamic model to describe the behavior of the laser induced plume, including the thermal non-equilibrium between electrons and heavy particles. Incorporating the formation of doubly charged ions (Cu{sup 2+}) in such an approach has not been considered previously. We evaluate the effect of the presence of doubly ionized species on the characteristics of the plume, i.e., temperature, pressure, and expansion velocity, and on the material itself by evaluating the ablation depth and plasma shielding effects. This study evaluates the effects of the doubly charged species using a non-equilibrium hydrodynamic approach which comprises a contribution to the understanding of the governing processes of the interaction of ultraviolet nanosecond laser pulses with metals and the parameter optimization depending on the intended application.

  17. Non-equilibrium Thermodynamic Dissolution Theory for Multi-Component Solid/Liquid Surfaces Involving Surface Adsorption and Radiolysis Kinetics

    SciTech Connect

    Stout, R B

    2001-04-01

    one of the two models developed, the propagation velocity of the solid-liquid dissolution interface is assumed proportional to configurational entropy discontinuity across the interface. Based on this assumption, the derived functional forms for non-equilibrium rate-thermodynamic force relationships are different from the near-equilibrium, linear rate-thermodynamic force relationships derived from the non-negative entropy dissipation requirement used in the classical approach of Onsager. These analyses of non-equilibrium thermodynamic processes across a propagating discontinuity, along with other idealized dissolution processes that depend on surface adsorption and radiolysis kinetics, provide generic dissolution response functions for empirical and/or regression analysis of data.

  18. Non-equilibrium molecular simulations of simple fluid transport at fluid-solid interfaces and fluidic behaviors at nanoscale

    NASA Astrophysics Data System (ADS)

    Yong, Xin

    Nano fluidics has shown promising potential for applications that could significantly impact our daily life, such as energy harvest, lab on a chip, desalination, etc. Current techniques to realize nano fluidic ideas are still very limited due to manufacturing technology. Although sub-micron fabrication techniques are undergoing rapid development recently, scientists and engineers are still not able to access actual nanometric systems. This reason prompts the development of computational tools to reveal physical principles underlying nano fluidic phenomena. Among various numerical approaches ranging from macroscopic to microscopic, molecular dynamics stands out because of its ability to faithfully model both equilibrium and non-equilibrium nanosystems by involving an appropriate amount of molecular details. The results from molecular dynamics simulations could elucidate essential physics and benefit designs of practical nano fluidic systems. This thesis attempts to provide the theoretical foundation for modeling nano fluidic systems, by investigating nanoscale fluid behaviors and nanoscale fluid-solid interfacial physics and transport for simple fluids via molecular dynamics simulations. Boundary-driven-shear, homogeneous-shear and reverse non-equilibrium molecular dynamics methods are implemented to generate non-equilibrium systems. The fundamental fluid behaviors such as velocity profile, temperature distribution and rheological material functions under steady planar shear are explored comprehensively by each method corresponding to different perspectives. The influences of nanoscale confinement are analyzed from the comparison among these methods. The advantages and disadvantages of each method are clarified, which provide guidance to conduct appropriate molecular dynamics simulations for nano fluidics. Further studies on the intrinsic slip of smooth solid surfaces is realized by the boundary-driven-shear method. Inspired by previous hypothesis of momentum

  19. Estimation of the dissociation rate of unlabelled ligand-receptor complexes by a 'two-step' competition binding approach.

    PubMed

    Packeu, A; Wennerberg, M; Balendran, A; Vauquelin, G

    2010-11-01

    Because the in vivo effectiveness of ligands may also be determined by the rate by which they dissociate from their target receptors, drug candidates are being increasingly screened for this kinetic property. The dissociation rate of unlabelled ligand-receptor complexes can be estimated indirectly from their ability to slow the association of subsequently added radioligand molecules. We used the 'two-step competition' binding approach consisting of pre-incubating the receptor preparation with a wide range of ligand concentrations, washing off free ligand molecules, adding radioligand and monitoring its receptor binding after a fixed time. Based on the rationale that binding of both ligands is mutually exclusive and that they bind according to the law of mass action to a single class of sites, the unlabelled ligand's dissociation rate can be estimated from the upward shift that the competition curve experiences after washing. The relevance of the 'two-step competition' approach was explored by computer simulations and by comparing the dissociation behaviour of unlabelled D(2) dopamine and CB(1) cannabinoid receptor antagonists in this and alternative approaches. Besides providing satisfactory estimations of dissociation rates, the method also detects the ability of the unlabelled ligand molecules to be released from 'sinks' such as the cell membrane. As the 'two-step competition' requires rapid intermediate washing steps and needs radioligand binding to be measured at only one time point, this approach is particularly suited for binding studies on intact plated cells. This article is part of a themed section on Analytical Receptor Pharmacology in Drug Discovery. To view the other articles in this section visit http://dx.doi.org/10.1111/bph.2010.161.issue-6. © 2010 The Authors. British Journal of Pharmacology © 2010 The British Pharmacological Society.

  20. Fast Scanning Calorimetry study of non-equilibrium relaxation in fragile organic liquids

    NASA Astrophysics Data System (ADS)

    Sadtchenko, Vlad; Bhattacharya, Deepanjan; O'Reilly, Liam

    2013-03-01

    Fast scanning calorimetry (FSC), capable of heating rates in excess of 1000000 K/s, was combined with vapor deposition technique to investigate non-equilibrium relaxation in micrometer thick viscous liquid films of several organic compounds (e.g.2-ethyl-1-hexanol, Toluene, and 1-propanol) under high vacuum conditions. Rapid heating of samples, vapor deposited at temperatures above their standard glass softening transition (Tg), resulted in observable endotherms which onset temperatures were strongly dependent on heating rate and the deposition temperature. Furthermore, all of the studied compounds were characterized by distinct critical deposition temperatures at which observation of endotherm became impossible. Based on the results of these studies, we have developed a simple model which makes it possible to infer the equilibrium enthalpy relaxation times for liquids from FSC data. We will discuss implications of these studies for contemporary models of non-equilibrium relaxation in glasses and supercooled liquids. Supported by NSF Grant 1012692.

  1. Nanoscale temperature measurements using non-equilibrium Brownian dynamics of a levitated nanosphere

    NASA Astrophysics Data System (ADS)

    Millen, J.; Deesuwan, T.; Barker, P.; Anders, J.

    2014-06-01

    Einstein realized that the fluctuations of a Brownian particle can be used to ascertain the properties of its environment. A large number of experiments have since exploited the Brownian motion of colloidal particles for studies of dissipative processes, providing insight into soft matter physics and leading to applications from energy harvesting to medical imaging. Here, we use heated optically levitated nanospheres to investigate the non-equilibrium properties of the gas surrounding them. Analysing the sphere's Brownian motion allows us to determine the temperature of the centre-of-mass motion of the sphere, its surface temperature and the heated gas temperature in two spatial dimensions. We observe asymmetric heating of the sphere and gas, with temperatures reaching the melting point of the material. This method offers opportunities for accurate temperature measurements with spatial resolution on the nanoscale, and provides a means for testing non-equilibrium thermodynamics.

  2. The non-equilibrium charge screening effects in diffusion-driven systems with pattern formation

    NASA Astrophysics Data System (ADS)

    Kuzovkov, V. N.; Kotomin, E. A.; de la Cruz, M. Olvera

    2011-07-01

    The effects of non-equilibrium charge screening in mixtures of oppositely charged interacting molecules on surfaces are analyzed in a closed system. The dynamics of charge screening and the strong deviation from the standard Debye-Hückel theory are demonstrated via a new formalism based on computing radial distribution functions suited for analyzing both short-range and long-range spacial ordering effects. At long distances the inhomogeneous molecular distribution is limited by diffusion, whereas at short distances (of the order of several coordination spheres) by a balance of short-range (Lennard-Jones) and long-range (Coulomb) interactions. The non-equilibrium charge screening effects in transient pattern formation are further quantified. It is demonstrated that the use of screened potentials, in the spirit of the Debye-Hückel theory, leads to qualitatively incorrect results.

  3. The non-equilibrium charge screening effects in diffusion-driven systems with pattern formation.

    PubMed

    Kuzovkov, V N; Kotomin, E A; Olvera de la Cruz, M

    2011-07-21

    The effects of non-equilibrium charge screening in mixtures of oppositely charged interacting molecules on surfaces are analyzed in a closed system. The dynamics of charge screening and the strong deviation from the standard Debye-Hückel theory are demonstrated via a new formalism based on computing radial distribution functions suited for analyzing both short-range and long-range spacial ordering effects. At long distances the inhomogeneous molecular distribution is limited by diffusion, whereas at short distances (of the order of several coordination spheres) by a balance of short-range (Lennard-Jones) and long-range (Coulomb) interactions. The non-equilibrium charge screening effects in transient pattern formation are further quantified. It is demonstrated that the use of screened potentials, in the spirit of the Debye-Hückel theory, leads to qualitatively incorrect results.

  4. Development of a non-equilibrium quantum transport calculation method based on constrained density functional

    NASA Astrophysics Data System (ADS)

    Kim, Han Seul; Kim, Yong-Hoon

    2015-03-01

    We report on the development of a novel first-principles method for the calculation of non-equilibrium quantum transport process. Within the scheme, non-equilibrium situation and quantum transport within the open-boundary condition are described by the region-dependent Δ self-consistent field method and matrix Green's function theory, respectively. We will discuss our solutions to the technical difficulties in describing bias-dependent electron transport at complicated nanointerfaces and present several application examples. Global Frontier Program (2013M3A6B1078881), Basic Science Research Grant (2012R1A1A2044793), EDISON Program (No. 2012M3C1A6035684), and 2013 Global Ph.D fellowship program of the National Research Foundation. KISTI Supercomputing Center (KSC-2014-C3-021).

  5. Generalized Metropolis acceptance criterion for hybrid non-equilibrium molecular dynamics-Monte Carlo simulations.

    PubMed

    Chen, Yunjie; Roux, Benoît

    2015-01-14

    A family of hybrid simulation methods that combines the advantages of Monte Carlo (MC) with the strengths of classical molecular dynamics (MD) consists in carrying out short non-equilibrium MD (neMD) trajectories to generate new configurations that are subsequently accepted or rejected via an MC process. In the simplest case where a deterministic dynamic propagator is used to generate the neMD trajectories, the familiar Metropolis acceptance criterion based on the change in the total energy ΔE, min[1, exp{-βΔE}], guarantees that the hybrid algorithm will yield the equilibrium Boltzmann distribution. However, the functional form of the acceptance probability is more complex when the non-equilibrium switching process is generated via a non-deterministic stochastic dissipative propagator coupled to a heat bath. Here, we clarify the conditions under which the Metropolis criterion remains valid to rigorously yield a proper equilibrium Boltzmann distribution within hybrid neMD-MC algorithm.

  6. Non-equilibrium oxidation states of zirconium during early stages of metal oxidation

    SciTech Connect

    Ma, Wen; Yildiz, Bilge; Herbert, F. William; Senanayake, Sanjaya D.

    2015-03-09

    The chemical state of Zr during the initial, self-limiting stage of oxidation on single crystal zirconium (0001), with oxide thickness on the order of 1 nm, was probed by synchrotron x-ray photoelectron spectroscopy. Quantitative analysis of the Zr 3d spectrum by the spectrum reconstruction method demonstrated the formation of Zr{sup 1+}, Zr{sup 2+}, and Zr{sup 3+} as non-equilibrium oxidation states, in addition to Zr{sup 4+} in the stoichiometric ZrO{sub 2}. This finding resolves the long-debated question of whether it is possible to form any valence states between Zr{sup 0} and Zr{sup 4+} at the metal-oxide interface. The presence of local strong electric fields and the minimization of interfacial energy are assessed and demonstrated as mechanisms that can drive the formation of these non-equilibrium valence states of Zr.

  7. Non-equilibrium oxidation states of zirconium during early stages of metal oxidation

    DOE PAGES

    Ma, Wen; Senanayake, Sanjaya D.; Herbert, F. William; ...

    2015-03-11

    The chemical state of Zr during the initial, self-limiting stage of oxidation on single crystal zirconium (0001), with oxide thickness on the order of 1 nm, was probed by synchrotron x-ray photoelectron spectroscopy. Quantitative analysis of the Zr 3d spectrum by the spectrum reconstruction method demonstrated the formation of Zr1+, Zr2+, and Zr3+ as non-equilibrium oxidation states, in addition to Zr4+ in the stoichiometric ZrO2. This finding resolves the long-debated question of whether it is possible to form any valence states between Zr0 and Zr4+ at the metal-oxide interface. As a result, the presence of local strong electric fields andmore » the minimization of interfacial energy are assessed and demonstrated as mechanisms that can drive the formation of these non-equilibrium valence states of Zr.« less

  8. The new physics of non-equilibrium condensates: insights from classical dynamics.

    PubMed

    Eastham, P R

    2007-07-25

    We discuss the dynamics of classical Dicke-type models, aiming to clarify the mechanisms by which coherent states could develop in potentially non-equilibrium systems such as semiconductor microcavities. We present simulations of an undamped model which show spontaneous coherent states with persistent oscillations in the magnitude of the order parameter. These states are generalizations of superradiant ringing to the case of inhomogeneous broadening. They correspond to the persistent gap oscillations proposed in fermionic atomic condensates, and arise from a variety of initial conditions. We show that introducing randomness into the couplings can suppress the oscillations, leading to a limiting dynamics with a time-independent order parameter. This demonstrates that non-equilibrium generalizations of polariton condensates can be created even without dissipation. We explain the dynamical origins of the coherence in terms of instabilities of the normal state, and consider how it can additionally develop through scattering and dissipation.

  9. Emergence of an enslaved phononic bandgap in a non-equilibrium pseudo-crystal

    NASA Astrophysics Data System (ADS)

    Bachelard, Nicolas; Ropp, Chad; Dubois, Marc; Zhao, Rongkuo; Wang, Yuan; Zhang, Xiang

    2017-08-01

    Material systems that reside far from thermodynamic equilibrium have the potential to exhibit dynamic properties and behaviours resembling those of living organisms. Here we realize a non-equilibrium material characterized by a bandgap whose edge is enslaved to the wavelength of an external coherent drive. The structure dynamically self-assembles into an unconventional pseudo-crystal geometry that equally distributes momentum across elements. The emergent bandgap is bestowed with lifelike properties, such as the ability to self-heal to perturbations and adapt to sudden changes in the drive. We derive an exact analytical solution for both the spatial organization and the bandgap features, revealing the mechanism for enslavement. This work presents a framework for conceiving lifelike non-equilibrium materials and emphasizes the potential for the dynamic imprinting of material properties through external degrees of freedom.

  10. Mesoscopic non-equilibrium thermodynamics of non-isothermal reaction-diffusion.

    PubMed

    Bedeaux, D; Pagonabarraga, I; Ortiz de Zárate, J M; Sengers, J V; Kjelstrup, S

    2010-10-21

    We show how the law of mass action can be derived from a thermodynamic basis, in the presence of temperature gradients, chemical potential gradients and hydrodynamic flow. The solution gives the law of mass action for the forward and the reverse contributions to the net chemical reaction. In addition we derive the fluctuation-dissipation theorem for the fluctuating contributions to the reaction rate, heat flux and mass fluxes. All these results arise without any other assumptions than those which are common in mesoscopic non-equilibrium thermodynamics; namely quasi-stationary transport across a high activation energy barrier, and local equilibrium along the reaction coordinate. Arrhenius-type behaviour of the kinetic coefficients is recovered. The thermal conductivity, Soret coefficient and diffusivity are significantly influenced by the presence of a chemical reaction. We thus demonstrate how chemical reactions can be fully reconciled with non-equilibrium thermodynamics.

  11. Implementation of non-equilibrium vertex corrections in KKR: transport through disordered layers

    NASA Astrophysics Data System (ADS)

    Franz, Christian; Czerner, Michael; Heiliger, Christian

    2013-10-01

    The theoretical description of modern nanoelectronic devices requires a quantum mechanical treatment and often involves disorder, e.g. from alloys. Therefore, the ab initio theory of transport using non-equilibrium Green’s functions is extended to the case of disorder described by the coherent potential approximation. This requires the calculation of non-equilibrium vertex corrections. We implement the vertex corrections in a Korringa-Kohn-Rostoker multiple scattering scheme. In order to verify our implementation and to demonstrate the accuracy and applicability we investigate a system of an iron-cobalt alloy layer embedded in copper. The results obtained with the coherent potential approximation are compared to supercell calculations. It turns out that vertex corrections play an important role for this system.

  12. Numerical investigation of non-equilibrium effects in hypersonic turbulent boundary layers

    NASA Astrophysics Data System (ADS)

    Kim, Pilbum; Kim, John; Zhong, Xiaolin; Eldredge, Jeff

    2014-11-01

    Direct numerical simulations of a spatially developing hypersonic boundary layer have been conducted in order to investigate thermal and chemical non-equilibrium effects in a hypersonic turbulent boundary layer. Two different flows, pure oxygen and pure nitrogen flows with specific total enthalpy, h0 ,O2 = 9 . 5017 MJ/kg and h0 ,N2 = 19 . 1116 MJ/kg, respectively, have been considered. The boundary edge conditions were obtained from a separate calculation of a flow over a blunt wedge at free-stream Mach numbers M∞ ,O2 = 15 and M∞ ,N2 = 20 . The inflow conditions were obtained from a simulation of a turbulent boundary layer of a perfect gas. Non-equilibrium effects on turbulence statistics and near-wall turbulence structures were examined by comparing with those obtained in a simulation of the same boundary layer with a perfect-gas assumption.

  13. Nanoscale temperature measurements using non-equilibrium Brownian dynamics of a levitated nanosphere.

    PubMed

    Millen, J; Deesuwan, T; Barker, P; Anders, J

    2014-06-01

    Einstein realized that the fluctuations of a Brownian particle can be used to ascertain the properties of its environment. A large number of experiments have since exploited the Brownian motion of colloidal particles for studies of dissipative processes, providing insight into soft matter physics and leading to applications from energy harvesting to medical imaging. Here, we use heated optically levitated nanospheres to investigate the non-equilibrium properties of the gas surrounding them. Analysing the sphere's Brownian motion allows us to determine the temperature of the centre-of-mass motion of the sphere, its surface temperature and the heated gas temperature in two spatial dimensions. We observe asymmetric heating of the sphere and gas, with temperatures reaching the melting point of the material. This method offers opportunities for accurate temperature measurements with spatial resolution on the nanoscale, and provides a means for testing non-equilibrium thermodynamics.

  14. Non-equilibrium behaviour in coacervate-based protocells under electric-field-induced excitation

    PubMed Central

    Yin, Yudan; Niu, Lin; Zhu, Xiaocui; Zhao, Meiping; Zhang, Zexin; Mann, Stephen; Liang, Dehai

    2016-01-01

    Although numerous strategies are now available to generate rudimentary forms of synthetic cell-like entities, minimal progress has been made in the sustained excitation of artificial protocells under non-equilibrium conditions. Here we demonstrate that the electric field energization of coacervate microdroplets comprising polylysine and short single strands of DNA generates membrane-free protocells with complex, dynamical behaviours. By confining the droplets within a microfluidic channel and applying a range of electric field strengths, we produce protocells that exhibit repetitive cycles of vacuolarization, dynamical fluctuations in size and shape, chaotic growth and fusion, spontaneous ejection and sequestration of matter, directional capture of solute molecules, and pulsed enhancement of enzyme cascade reactions. Our results highlight new opportunities for the study of non-equilibrium phenomena in synthetic protocells, provide a strategy for inducing complex behaviour in electrostatically assembled soft matter microsystems and illustrate how dynamical properties can be activated and sustained in microcompartmentalized media. PMID:26876162

  15. Non-equilibrium behaviour in coacervate-based protocells under electric-field-induced excitation.

    PubMed

    Yin, Yudan; Niu, Lin; Zhu, Xiaocui; Zhao, Meiping; Zhang, Zexin; Mann, Stephen; Liang, Dehai

    2016-02-15

    Although numerous strategies are now available to generate rudimentary forms of synthetic cell-like entities, minimal progress has been made in the sustained excitation of artificial protocells under non-equilibrium conditions. Here we demonstrate that the electric field energization of coacervate microdroplets comprising polylysine and short single strands of DNA generates membrane-free protocells with complex, dynamical behaviours. By confining the droplets within a microfluidic channel and applying a range of electric field strengths, we produce protocells that exhibit repetitive cycles of vacuolarization, dynamical fluctuations in size and shape, chaotic growth and fusion, spontaneous ejection and sequestration of matter, directional capture of solute molecules, and pulsed enhancement of enzyme cascade reactions. Our results highlight new opportunities for the study of non-equilibrium phenomena in synthetic protocells, provide a strategy for inducing complex behaviour in electrostatically assembled soft matter microsystems and illustrate how dynamical properties can be activated and sustained in microcompartmentalized media.

  16. Non-equilibrium behaviour in coacervate-based protocells under electric-field-induced excitation

    NASA Astrophysics Data System (ADS)

    Yin, Yudan; Niu, Lin; Zhu, Xiaocui; Zhao, Meiping; Zhang, Zexin; Mann, Stephen; Liang, Dehai

    2016-02-01

    Although numerous strategies are now available to generate rudimentary forms of synthetic cell-like entities, minimal progress has been made in the sustained excitation of artificial protocells under non-equilibrium conditions. Here we demonstrate that the electric field energization of coacervate microdroplets comprising polylysine and short single strands of DNA generates membrane-free protocells with complex, dynamical behaviours. By confining the droplets within a microfluidic channel and applying a range of electric field strengths, we produce protocells that exhibit repetitive cycles of vacuolarization, dynamical fluctuations in size and shape, chaotic growth and fusion, spontaneous ejection and sequestration of matter, directional capture of solute molecules, and pulsed enhancement of enzyme cascade reactions. Our results highlight new opportunities for the study of non-equilibrium phenomena in synthetic protocells, provide a strategy for inducing complex behaviour in electrostatically assembled soft matter microsystems and illustrate how dynamical properties can be activated and sustained in microcompartmentalized media.

  17. From tunneling to contact in a magnetic atom: The non-equilibrium Kondo effect

    NASA Astrophysics Data System (ADS)

    Choi, Deung-Jang; Abufager, Paula; Limot, Laurent; Lorente, Nicolás

    2017-03-01

    A low-temperature scanning tunneling microscope was employed to study the differential conductance in an atomic junction formed by an adsorbed Co atom on a Cu(100) surface and a copper-covered tip. A zero-bias anomaly (ZBA) reveals spin scattering off the Co atom, which is assigned to a Kondo effect. The ZBA exhibits a characteristic asymmetric lineshape when electrons tunnel between tip and sample, while upon the tip-Co contact it symmetrizes and broadens. Through density functional theory calculations and the non-equilibrium non-crossing approximation, we show that the lineshape broadening is mainly a consequence of the additional coupling to the tip, while non-equilibrium effects only modify the large-bias tails of the ZBA.

  18. Non-equilibrium universality in the dynamics of dissipative cold atomic gases

    NASA Astrophysics Data System (ADS)

    Marcuzzi, M.; Levi, E.; Li, W.; Garrahan, J. P.; Olmos, B.; Lesanovsky, I.

    2015-07-01

    The theory of continuous phase transitions predicts the universal collective properties of a physical system near a critical point, which for instance manifest in characteristic power-law behaviours of physical observables. The well-established concept at or near equilibrium, universality, can also characterize the physics of systems out of equilibrium. The most fundamental instance of a genuine non-equilibrium phase transition is the directed percolation (DP) universality class, where a system switches from an absorbing inactive to a fluctuating active phase. Despite being known for several decades it has been challenging to find experimental systems that manifest this transition. Here we show theoretically that signatures of the DP universality class can be observed in an atomic system with long-range interactions. Moreover, we demonstrate that even mesoscopic ensembles—which are currently studied experimentally—are sufficient to observe traces of this non-equilibrium phase transition in one, two and three dimensions.

  19. Effect of thermochemical non-equilibrium on the aerodynamics of an osculating-cone waverider under different angles of attack

    NASA Astrophysics Data System (ADS)

    Liu, Zhen; Liu, Jun; Ding, Feng; Li, Kai; Xia, Zhixun

    2017-10-01

    In order to research the effect of thermochemical non-equilibrium on the aerodynamics of an osculating-cone waverider, thermochemical non-equilibrium flow and perfect gas model are employed to study the aerodynamics of an osculating-cone waverider under different angles of attack. The obtained results show that the slope of the oblique shock wave has little difference when considering the thermochemical non-equilibrium effect under the condition of zero angle of attack. However, under the condition of other attack angles, the slope of the oblique shock wave diminishes when considering the thermochemical non-equilibrium effect. Furthermore, the non-equilibrium effect moves the pressure center of the osculating-cone waverider forward by as much as 1.53% of the whole craft's length, which must be taken into consideration in the balance design of aircraft.

  20. Electron Energy Distribution and Transfer Phenomena in Non-Equilibrium Gases

    DTIC Science & Technology

    2016-09-01

    AFRL-RQ-WP-TR-2016-0130 ELECTRON ENERGY DISTRIBUTION AND TRANSFER PHENOMENA IN NON-EQUILIBRIUM GASES Steven F. Adams and Bradley S...2. REPORT TYPE 3. DATES COVERED (From - To) September 2016 Final 15 March 2010 – 16 September 2016 4. TITLE AND SUBTITLE ELECTRON ENERGY DISTRIBUTION...and ultimately control the distribution of electronic and kinetic energies within low temperature plasmas and enhance the understanding of phenomena

  1. Energy Conversion in High Enthalpy Flows and Non-equilibrium Plasmas

    DTIC Science & Technology

    2014-01-01

    emission intensity on each lasing vibrational transition as a function of time. The laser cavity model is a simple Fabry – Perot model, with the optical...into a flowing plenum section. Gases are supplied at plenum pressures of P0 = 0.5-1.0 atm. Steady-state non- equilibrium supersonic flow in the wind...tunnel is produced by sustaining a high- pressure electric discharge in the plenum. Here, two pairs of electrodes are arranged to provide orthogonal

  2. Mechanical responses and stress fluctuations of a supercooled liquid in a sheared non-equilibrium state.

    PubMed

    Mizuno, H; Yamamoto, R

    2012-04-01

    A steady shear flow can drive supercooled liquids into a non-equilibrium state. Using molecular dynamics simulations under steady shear flow superimposed with oscillatory shear strain for a probe, non-equilibrium mechanical responses are studied for a model supercooled liquid composed of binary soft spheres. We found that even in the strongly sheared situation, the supercooled liquid exhibits surprisingly isotropic responses to oscillating shear strains applied in three different components of the strain tensor. Based on this isotropic feature, we successfully constructed a simple two-mode Maxwell model that can capture the key features of the storage and loss moduli, even for highly non-equilibrium state. Furthermore, we examined the correlation functions of the shear stress fluctuations, which also exhibit isotropic relaxation behaviors in the sheared non-equilibrium situation. In contrast to the isotropic features, the supercooled liquid additionally demonstrates anisotropies in both its responses and its correlations to the shear stress fluctuations. Using the constitutive equation (a two-mode Maxwell model), we demonstrated that the anisotropic responses are caused by the coupling between the oscillating strain and the driving shear flow. Due to these anisotropic responses and fluctuations, the violation of the fluctuation-dissipation theorem (FDT) is distinct for different components. We measured the magnitude of this violation in terms of the effective temperature. It was demonstrated that the effective temperature is notably different between different components, which indicates that a simple scalar mapping, such as the concept of an effective temperature, oversimplifies the true nature of supercooled liquids under shear flow. An understanding of the mechanism of isotropies and anisotropies in the responses and fluctuations will lead to a better appreciation of these violations of the FDT, as well as certain consequent modifications to the concept of an

  3. Search for a non-equilibrium plasma in the merging galaxy cluster Abell 754

    NASA Astrophysics Data System (ADS)

    Inoue, Shota; Hayashida, Kiyoshi; Ueda, Shutaro; Nagino, Ryo; Tsunemi, Hiroshi; Koyama, Katsuji

    2016-06-01

    Abell 754 is a galaxy cluster in which an ongoing merger is evident on the plane of the sky, from the southeast to the northwest. We study the spatial variation of the X-ray spectra observed with Suzaku along the merging direction, centering on the Fe Ly α/Fe He α line ratio to search for possible deviation from ionization equilibrium. Fitting with a single-temperature collisional non-equilibrium plasma model shows that the electron temperature increases from the southeast to the northwest. The ionization parameter is consistent with that in equilibrium (net > 1013 s cm-3) except for the specific region with the highest temperature (kT=13.3_{-1.1}^{+1.4}keV) where n_et=10^{11.6_{-1.7}^{+0.6}}s cm-3. The elapsed time from the plasma heating estimated from the ionization parameter is 0.36-76 Myr at the 90% confidence level. This timescale is quite short but consistent with the traveling time of a shock to pass through that region. We thus interpret that the non-equilibrium ionization plasma in Abell 754 observed is a remnant of the shock heating in the merger process. However, we note that the X-ray spectrum of the specific region where the non-equilibrium is found can also be fitted with a collisional ionization plasma model with two temperatures, low kT=4.2^{+4.2}_{-1.5}keV and very high kT >19.3 keV. The very high temperature component is alternatively fitted with a power-law model. Either of these spectral models is interpreted as a consequence of the ongoing merger process as in the case of the non-equilibrium ionization plasma.

  4. Non-equilibrium growth patterns of carbohydrate and saccharin in gel media

    NASA Astrophysics Data System (ADS)

    Das, Ishwar; Sharma, Archana; Kumar, Anuj; Lall, R. S.

    1997-02-01

    Non-equilibrium growth patterns of mono-, di-saccharides and a sweetener saccharin have been developed on microslides in the presence of a dense matrix. Scanned pictures were analyzed and fractal dimensions calculated by a box counting method. Morphologies and fractal dimension were found to depend on the compound-dense matrix composition. In case of di-saccharides, the morphology depends on a linkage between the monomer units.

  5. On the transition of a non-equilibrium system to an equilibrium system

    NASA Astrophysics Data System (ADS)

    Cohen, E. G. D.

    2015-07-01

    It is shown that the most important feature of Non-Equilibrium Thermodynamics is not the entropy production, but the organization of the currents in order to flow. This is also needed to obtain the maximum entropy in the equilibrium state, as is required by Equilibrium Thermodynamics. This article is supplemented with comments by Hong Qian and Yves Pomeau and a final reply by the author.

  6. AC Power Consumption of Single-Walled Carbon Nanotube Interconnects: Non-Equilibrium Green's Function Simulation

    NASA Astrophysics Data System (ADS)

    Yamamoto, Takahiro; Sasaoka, Kenji; Watanabe, Satoshi

    2012-04-01

    We theoretically investigate the emittance and dynamic dissipation of a nanoscale interconnect consisting of a metallic single-walled carbon nanotube using the non-equilibrium Green's function technique for AC electronic transport. We show that the emittance and dynamic dissipation depend strongly on the contact conditions of the interconnect and that the power consumption can be reduced by adjusting the contact conditions. We propose an appropriate condition of contact that yields a high power factor and low apparent power.

  7. Invariance of specific mass increment in the case of non-equilibrium growth

    NASA Astrophysics Data System (ADS)

    Martyushev, L. M.; Sergeev, A. P.; Terentiev, P. S.

    2015-09-01

    The invariance of specific mass increments of crystalline structures that co-exist in the case of non-equilibrium growth is grounded for the first time by using the maximum entropy production principle. Based on the hypothesis of the existence of a universal growth equation, and through the dimensional analysis, an explicit form of the time-dependent specific mass increment is proposed. The applicability of the obtained results for describing growth in animate nature is discussed.

  8. Direct-Numerical and Large-Eddy Simulations of a Non-Equilibrium Turbulent Kolmogorov Flow

    NASA Technical Reports Server (NTRS)

    Woodruff, S. L.; Shebalin, J. V.; Hussaini, M. Y.

    1999-01-01

    A non-equilibrium form of turbulent Kolmogorov flow is set up by making an instantaneous change in the amplitude of the spatially-periodic forcing. It is found that the response of the flow to this instantaneous change becomes more dramatic as the wavenumber of the forcing is increased, and, at the same time, that the faithfulness with which the large-eddy-simulation results agree with the direct-numerical results decreases.

  9. Comparison of Thermodynamic Equilibrium and Non-Equilibrium Representation of Materials

    DTIC Science & Technology

    2007-03-22

    ability to use multiple EOSs, including the semi-emperical Mie-Gruneisen EOS and tabular Sesame EOS . Modeling high speed impacts necessi- tates modeling...to better determine the applicability of the Mie-Gruneisen EOS and the Sesame EOS in situations that in- clude non-equilibrium thermodynamics, the...high speed, uniaxial impacts between two iron bars are modeled in CTH. These impacts are modeled using the Mie-Gruneisen EOS , Sesame EOS and a two state

  10. Measurement of Radiative Non-Equilibrium for Air Shocks Between 7-9 Km/s

    NASA Technical Reports Server (NTRS)

    Cruden, Brett A.; Brandis, Aaron M.

    2016-01-01

    This paper describes a recent characterization of non-equilibrium radiation for shock speeds between 7 and 9 km/s in the NASA Ames Electric Arc Shock Tube (EAST) Facility. Data is spectrally resolved from 190- 1450 nm and spatially resolved behind the shock front. Comparisons are made to DPLR/NEQAIR simulations using different modeling options and recommendations for future study are made based on these comparisons.

  11. Spontaneous Raman Scattering Measurements of Vibrational Non-Equilibrium in High-Speed Jets

    NASA Astrophysics Data System (ADS)

    Reising, Heath; Haller, Timothy; Clemens, Noel; Varghese, Philip

    2016-11-01

    Vibrational non-equilibrium is detected and quantified in a high-speed jet using spontaneous Raman scattering. The non-equilibrium is induced by rapid mixing of the different temperature streams of the jet and coflow which are approximately 500 K and 1000 K, respectively. Simultaneous measurements of vibrational and rotational temperatures are made using fits of time-averaged high-resolution Stokes spectra of both N2 and O2 to high fidelity models of the spectrum. Independent measurements of these two species temperatures show good agreement in rotational temperature while the vibrational temperatures show only N2 to have a strong non-equilibrium. This suggests that vibrational energy transfer between these two molecules is very inefficient at these conditions. Work is being conducted to extend the technique to single-shot measurements by employing a multiple-pass cell to increase the incident laser fluence in the measurement volume. This new capability will allow for statistics of vibrational temperature to be quantified. The instantaneous nature of the measurements will also allow the technique to be applied in regions of large temperature fluctuations, such as the base of a lifted turbulent jet flame, where time-average measurements are not valid. This work was supported by funding from the Air Force Office of Scientific Research.

  12. Dynamic scaling for the growth of non-equilibrium fluctuations during thermophoretic diffusion in microgravity

    PubMed Central

    Cerbino, Roberto; Sun, Yifei; Donev, Aleksandar; Vailati, Alberto

    2015-01-01

    Diffusion processes are widespread in biological and chemical systems, where they play a fundamental role in the exchange of substances at the cellular level and in determining the rate of chemical reactions. Recently, the classical picture that portrays diffusion as random uncorrelated motion of molecules has been revised, when it was shown that giant non-equilibrium fluctuations develop during diffusion processes. Under microgravity conditions and at steady-state, non-equilibrium fluctuations exhibit scale invariance and their size is only limited by the boundaries of the system. In this work, we investigate the onset of non-equilibrium concentration fluctuations induced by thermophoretic diffusion in microgravity, a regime not accessible to analytical calculations but of great relevance for the understanding of several natural and technological processes. A combination of state of the art simulations and experiments allows us to attain a fully quantitative description of the development of fluctuations during transient diffusion in microgravity. Both experiments and simulations show that during the onset the fluctuations exhibit scale invariance at large wave vectors. In a broader range of wave vectors simulations predict a spinodal-like growth of fluctuations, where the amplitude and length-scale of the dominant mode are determined by the thickness of the diffuse layer. PMID:26419420

  13. An Initial Non-Equilibrium Porous-Media Model for CFD Simulation of Stirling Regenerators

    NASA Technical Reports Server (NTRS)

    Tew, Roy C.; Simon, Terry; Gedeon, David; Ibrahim, Mounir; Rong, Wei

    2006-01-01

    The objective of this paper is to define empirical parameters for an initial thermal non-equilibrium porous-media model for use in Computational Fluid Dynamics (CFD) codes for simulation of Stirling regenerators. The two codes currently used at Glenn Research Center for Stirling modeling are Fluent and CFD-ACE. The codes porous-media models are equilibrium models, which assume solid matrix and fluid are in thermal equilibrium. This is believed to be a poor assumption for Stirling regenerators; Stirling 1-D regenerator models, used in Stirling design, use non-equilibrium regenerator models and suggest regenerator matrix and gas average temperatures can differ by several degrees at a given axial location and time during the cycle. Experimentally based information was used to define: hydrodynamic dispersion, permeability, inertial coefficient, fluid effective thermal conductivity, and fluid-solid heat transfer coefficient. Solid effective thermal conductivity was also estimated. Determination of model parameters was based on planned use in a CFD model of Infinia's Stirling Technology Demonstration Converter (TDC), which uses a random-fiber regenerator matrix. Emphasis is on use of available data to define empirical parameters needed in a thermal non-equilibrium porous media model for Stirling regenerator simulation. Such a model has not yet been implemented by the authors or their associates.

  14. Dynamical Detailed Balance and Local Kms Condition for Non-Equilibrium States

    NASA Astrophysics Data System (ADS)

    Accardi, Luigi; Imafuku, Kentaro

    The principle of detailed balance is at the basis of equilibrium physics and is equivalent to the Kubo-Martin-Schwinger (KMS) condition (under quite general assumptions). In the present paper we prove that a large class of non-equilibrium quantum systems satisfies a dynamical generalization of the detailed balance condition (dynamical detailed balance) expressing the fact that all the micro-currents, associated to the Bohr frequencies are constant. The usual (equilibrium) detailed balance condition is characterized by the property that this constant is identically zero. From this we deduce a simple and experimentally measurable relation expressing the microcurrent associated to a transition between two levels ɛm→ɛn as a linear combination of the occupation probabilities of the two levels, with coefficients given by the generalized susceptivities (transport coefficients). We then give a second characterization of the dynamical detailed balance condition using a master equation rather than the microcurrents. Finally we show that these two conditions are equivalent to a "local" generalization of the usual KMS condition. Summing up: rather than postulating some ansatz on the basis of phenomenological models or of numerical simulations, we deduce, directly in the quantum domain and from fundamental principles, some natural and simple non equilibrium generalizations of the three main characterizations of equilibrium states. Then we prove that these three, apparently very far, conditions are equivalent. These facts support our convinction that these three equivalent conditions capture a universal aspect of non equilibrium phenomena.

  15. Second law considerations on the third law: From Boltzmann and Loschmidt paradox to non equilibrium temperature

    NASA Astrophysics Data System (ADS)

    Lucia, Umberto

    2016-02-01

    The balance of forces and processes between the system and the environment and the processes inside the system are the result of the flows of the quanta. Moreover, the transition between two thermodynamic states is the consequence of absorption or emission of quanta, but, during the transition, the entropy variation due to the irreversibility occurs and it breaks any symmetry of time. Consequently, the irreversibility is the result of a transition, a process, an interaction between the system and its environment. This interaction results completely time-irreversible for any real process because of irreversibility. As a consequence, a proof of the third law is obtained proving that the zero temperature state can be achieved only for an infinite work lost for dissipation or in an infinite time. The fundamental role of time both in equilibrium and in non equilibrium analysis is pointed out. Moreover, the non equilibrium temperature is related to the entropy generation and its fluctuation rate; indeed, non-stationary temperature means that the system has not yet attained free energy minimum state, i.e., the maximum entropy state; the consequence is that the zero temperature state can be achieved only for an infinite work lost for dissipation or in an infinite time. In engineering thermodynamics the efficiency is always obtained without any consideration on time, while, here, just the time is introduced as a fundamental quantity of the analysis of non equilibrium states.

  16. Non-equilibrium condensation of supercritical carbon dioxide in a converging-diverging nozzle

    NASA Astrophysics Data System (ADS)

    Ameli, Alireza; Afzalifar, Ali; Turunen-Saaresti, Teemu

    2017-03-01

    Carbon dioxide (CO2) is a promising alternative as a working fluid for future energy conversion and refrigeration cycles. CO2 has low global warming potential compared to refrigerants and supercritical CO2 Brayton cycle ought to have better efficiency than today’s counter parts. However, there are several issues concerning behaviour of supercritical CO2 in aforementioned applications. One of these issues arises due to non-equilibrium condensation of CO2 for some operating conditions in supercritical compressors. This paper investigates the non-equilibrium condensation of carbon dioxide in the course of an expansion from supercritical stagnation conditions in a converging-diverging nozzle. An external look-up table was implemented, using an in-house FORTRAN code, to calculate the fluid properties in supercritical, metastable and saturated regions. This look-up table is coupled with the flow solver and the non-equilibrium condensation model is introduced to the solver using user defined expressions. Numerical results are compared with the experimental measurements. In agreement with the experiment, the distribution of Mach number in the nozzle shows that the flow becomes supersonic in upstream region near the throat where speed of sound is minimum also the equilibrium reestablishment occurs at the outlet boundary condition.

  17. One-dimensional non-equilibrium shock wave structure analysis by simplified conventional Burnett equations

    NASA Astrophysics Data System (ADS)

    Shao, Chun; Zhao, Wenwen; Chen, Weifang

    2016-11-01

    The inner shock wave structure with non-equilibrium effect is difficult to be accurately simulated due to the great gradient of density and temperature. In this paper, simplified conventional Burnett (SCB) equations were formulated for the study of hypersonic shock wave structure in continuum-transition regime. The conventional Burnett equations were derived by using the second-order Chapman-Enskog expansion of the velocity distribution function in Boltzmann equation. By neglecting conventional Burnett terms which are inversely proportional to Mach number, the constitutive relations in SCB equations were simplified specifically for hypersonic flow. The rotational and vibrational energy balance equations were also introduced into the governing equations to study the non-equilibrium relaxation processes inside shock waves. Meanwhile, generalized Rankine-Hugoniot relations were established to obtain the post-shock flow parameters in non-equilibrium flow. The numerical methods included three-order Runge-Kutta time-splitting method and AUSMPW+ flux-difference splitting method with MUSCL scheme. One-dimensional Nitrogen shock wave structure at different Mach numbers was simulated using SCB and NS equations respectively. The results indicate that the SCB equations can capture the shock waves structures more precisely and the flow variables are in better agreement with the DSMC results than NS equations in high Mach number cases.

  18. Direct measurement of DNA bending by type IIA topoisomerases: implications for non-equilibrium topology simplification

    PubMed Central

    Hardin, Ashley H.; Sarkar, Susanta K.; Seol, Yeonee; Liou, Grace F.; Osheroff, Neil; Neuman, Keir C.

    2011-01-01

    Type IIA topoisomerases modify DNA topology by passing one segment of duplex DNA (transfer or T–segment) through a transient double-strand break in a second segment of DNA (gate or G–segment) in an ATP-dependent reaction. Type IIA topoisomerases decatenate, unknot and relax supercoiled DNA to levels below equilibrium, resulting in global topology simplification. The mechanism underlying this non-equilibrium topology simplification remains speculative. The bend angle model postulates that non-equilibrium topology simplification scales with the bend angle imposed on the G–segment DNA by the binding of a type IIA topoisomerase. To test this bend angle model, we used atomic force microscopy and single-molecule Förster resonance energy transfer to measure the extent of bending imposed on DNA by three type IIA topoisomerases that span the range of topology simplification activity. We found that Escherichia coli topoisomerase IV, yeast topoisomerase II and human topoisomerase IIα each bend DNA to a similar degree. These data suggest that DNA bending is not the sole determinant of non-equilibrium topology simplification. Rather, they suggest a fundamental and conserved role for DNA bending in the enzymatic cycle of type IIA topoisomerases. PMID:21421557

  19. A numerical model of non-equilibrium thermal plasmas. II. Governing equations

    SciTech Connect

    Li HePing; Zhang XiaoNing; Xia Weidong

    2013-03-15

    Governing equations and the corresponding physical properties of the plasmas are both prerequisites for studying the fundamental processes in a non-equilibrium thermal plasma system numerically. In this paper, a kinetic derivation of the governing equations used for describing the complicated thermo-electro-magneto-hydrodynamic-chemical coupling effects in non-equilibrium thermal plasmas is presented. This derivation, which is achieved using the Chapman-Enskog method, is completely consistent with the theory of the transport properties reported in the previous paper by the same authors. It is shown, based on this self-consistent theory, that the definitions of the specific heat at constant pressure and the reactive thermal conductivity of two-temperature plasmas are not necessary. The governing equations can be reduced to their counterparts under local thermodynamic equilibrium (LTE) and local chemical equilibrium (LCE) conditions. The general method for the determination of the boundary conditions of the solved variables is also discussed briefly. The two papers establish a self-consistent physical-mathematical model that describes the complicated physical and chemical processes in a thermal plasma system for the cases both in LTE or LCE conditions and under non-equilibrium conditions.

  20. The efficiency of driving chemical reactions by a physical non-equilibrium is kinetically controlled.

    PubMed

    Göppel, Tobias; Palyulin, Vladimir V; Gerland, Ulrich

    2016-07-27

    An out-of-equilibrium physical environment can drive chemical reactions into thermodynamically unfavorable regimes. Under prebiotic conditions such a coupling between physical and chemical non-equilibria may have enabled the spontaneous emergence of primitive evolutionary processes. Here, we study the coupling efficiency within a theoretical model that is inspired by recent laboratory experiments, but focuses on generic effects arising whenever reactant and product molecules have different transport coefficients in a flow-through system. In our model, the physical non-equilibrium is represented by a drift-diffusion process, which is a valid coarse-grained description for the interplay between thermophoresis and convection, as well as for many other molecular transport processes. As a simple chemical reaction, we consider a reversible dimerization process, which is coupled to the transport process by different drift velocities for monomers and dimers. Within this minimal model, the coupling efficiency between the non-equilibrium transport process and the chemical reaction can be analyzed in all parameter regimes. The analysis shows that the efficiency depends strongly on the Damköhler number, a parameter that measures the relative timescales associated with the transport and reaction kinetics. Our model and results will be useful for a better understanding of the conditions for which non-equilibrium environments can provide a significant driving force for chemical reactions in a prebiotic setting.

  1. Non-equilibrium effects in atmospheric characteristic oscillations due to radiation balance

    NASA Astrophysics Data System (ADS)

    Nurgaliyeva, K. E.; Somsikov, V. M.

    2008-12-01

    Nowadays researches on global change of climate are faces the challenge of insufficient development of open system theory. In this connection the problem of energy and entropy exchange process between solar radiation and atmospheric gas influence on atmospheric dynamics in the frames of non-equilibrium thermodynamics was studied in this work. For this purpose the equations of flow [fluid] dynamics for interacting medium - gas and radiation - with taking into account the entropy production in atmosphere and its exchanging between gas and radiation were used in this work. Dispersion relation numerical analysis of atmospheric gravity waves (AGWs) in non-equilibrium atmosphere was carried out. It has been established that the spectra in the daytime hours shifts on high-frequency region in comparison with nighttime spectra. This difference can reach several percent in certain atmospheric regions. For the spectrum of the equilibrium model of the atmosphere the difference between the daytime and nighttime spectra makes up several fractions of percent. A comparison of the theoretical calculations of AGWs spectrum with observations confirmed the availability of non-equilibrium effects in the AGWs spectral composition. In particular, that concerns of Antarctic data results gave the difference is about 4 percent, Almaty data results ranges between 1.3 - 6 per cent in depends of season. Investigation of wave disturbances on sunset and sunrise periods of time shows that there is a tendency for low frequency region at evening-time spectra and high frequency region at morning- time spectra.

  2. Space charge corrected electron emission from an aluminum surface under non-equilibrium conditions

    SciTech Connect

    Wendelen, W.; Bogaerts, A.; Mueller, B. Y.; Rethfeld, B.; Autrique, D.

    2012-06-01

    A theoretical study has been conducted of ultrashort pulsed laser induced electron emission from an aluminum surface. Electron emission fluxes retrieved from the commonly employed Fowler-DuBridge theory were compared to fluxes based on a laser-induced non-equilibrium electron distribution. As a result, the two- and three-photon photoelectron emission parameters for the Fowler-DuBridge theory have been approximated. We observe that at regimes where photoemission is important, laser-induced electron emission evolves in a more smooth manner than predicted by the Fowler-DuBridge theory. The importance of the actual electron distribution decreases at higher laser fluences, whereas the contribution of thermionic emission increases. Furthermore, the influence of a space charge effect on electron emission was evaluated by a one dimensional particle-in-cell model. Depending on the fluences, the space charge reduces the electron emission by several orders of magnitude. The influence of the electron emission flux profiles on the effective electron emission was found to be negligible. However, a non-equilibrium electron velocity distribution increases the effective electron emission significantly. Our results show that it is essential to consider the non-equilibrium electron distribution as well as the space charge effect for the description of laser-induced photoemission.

  3. Shock and Laser Induced Non-Equilibrium Chemistry in Molecular Energetics

    NASA Astrophysics Data System (ADS)

    Wood, Mitchell; Cherukara, Mathew; Kober, Edward; Strachan, Alejandro

    2015-06-01

    In this study, we have used large scale reactive molecular dynamics (MD) simulations to study how contrasting initiation mechanisms from either shock or electromagnetic insults compare to traditional thermal initiation. We will show how insults of equal strength but different character can yield vastly different reaction profiles and thus the evolution of hot-spots. For shocked RDX (Up = 2km/s), we find that the collapse of a cylindrical 40 nm diameter pore leads to a significant amount of non-equilibrium reactions followed by the formation of a sustained deflagration wave. In contrast, a hot spot that is seeded into a statically compressed crystal with matching size and temperature will quench over the same timescale, highlighting the importance of insult type. Furthermore, MD simulations of electromagnetic insults coupled to intramolecular vibrations have shown, in some cases, mode specific initial chemistry and altered kinetics of the subsequent decomposition. By leveraging spectroscopic and chemical information gathered in our MD simulations, we have been able to identify and track non-equilibrium vibrational states of these materials and correlate them to these observed changes. Implications of insult dependent reactivity and non-equilibrium chemistry will be discussed.

  4. Energy flow and fluctuations in non-equilibrium conformal field theory on star graphs

    NASA Astrophysics Data System (ADS)

    Doyon, Benjamin; Hoogeveen, Marianne; Bernard, Denis

    2014-03-01

    We consider non-equilibrium quantum steady states in conformal field theory (CFT) on star-graph configurations, with a particular, simple connection condition at the vertex of the graph. These steady states occur after a large time as a result of initially thermalizing the legs of the graph at different temperatures, and carry energy flows. Using purely Virasoro algebraic calculations we evaluate the exact scaled cumulant generating function for these flows. We show that this function satisfies a generalization of the usual non-equilibrium fluctuation relations. This extends results by two of the authors to the case of more than two legs. It also provides an alternative derivation centered on Virasoro algebra operators rather than local fields, hence an alternative regularization scheme, thus confirming the validity and universality of the scaled cumulant generating function. Our derivation shows how the usual Virasoro algebra leads, in large volumes, to a continuous-index Virasoro algebra for which we develop diagrammatic principles, which may be of interest in other non-equilibrium contexts as well. Finally, our results shed light on the Poisson-process interpretation of the long-time energy transfer in CFT.

  5. Multi-Modality Pulsed AC Source for Medical Applications of Non-Equilibrium Plasmas

    NASA Astrophysics Data System (ADS)

    Friedrichs, Daniel; Gilbert, James

    2014-10-01

    A burgeoning field has developed around the use of non-equilibrium (``cold'') plasmas for various medical applications, including wound treatment, surface sterilization, non-thermal hemostasis, and selective cell destruction. Proposed devices typically utilize pulsed DC power sources, which have no other therapeutic utility, and may encounter significant regulatory restrictions regarding their safety for use in patient care. Additionally, dedicated capital equipment is difficult for healthcare facilities to justify. In this work, we have demonstrated for the first time the generation of non-equilibrium plasma using pulsed AC output from a specially-designed electrosurgical generator. The ability to power novel non-equilibrium plasma devices from a piece of equipment already ubiquitous in operating theatres should significantly reduce the barriers to adoption of plasma devices. We demonstrate the ability of a prototype device, coupled to this source, to reduce bacterial growth in vitro. Such a system could allow a single surgical instrument to provide both non-thermal sterilization and thermal tissue dissection.

  6. Dynamic scaling for the growth of non-equilibrium fluctuations during thermophoretic diffusion in microgravity

    NASA Astrophysics Data System (ADS)

    Cerbino, Roberto; Sun, Yifei; Donev, Aleksandar; Vailati, Alberto

    2015-09-01

    Diffusion processes are widespread in biological and chemical systems, where they play a fundamental role in the exchange of substances at the cellular level and in determining the rate of chemical reactions. Recently, the classical picture that portrays diffusion as random uncorrelated motion of molecules has been revised, when it was shown that giant non-equilibrium fluctuations develop during diffusion processes. Under microgravity conditions and at steady-state, non-equilibrium fluctuations exhibit scale invariance and their size is only limited by the boundaries of the system. In this work, we investigate the onset of non-equilibrium concentration fluctuations induced by thermophoretic diffusion in microgravity, a regime not accessible to analytical calculations but of great relevance for the understanding of several natural and technological processes. A combination of state of the art simulations and experiments allows us to attain a fully quantitative description of the development of fluctuations during transient diffusion in microgravity. Both experiments and simulations show that during the onset the fluctuations exhibit scale invariance at large wave vectors. In a broader range of wave vectors simulations predict a spinodal-like growth of fluctuations, where the amplitude and length-scale of the dominant mode are determined by the thickness of the diffuse layer.

  7. Dynamic scaling for the growth of non-equilibrium fluctuations during thermophoretic diffusion in microgravity.

    PubMed

    Cerbino, Roberto; Sun, Yifei; Donev, Aleksandar; Vailati, Alberto

    2015-09-30

    Diffusion processes are widespread in biological and chemical systems, where they play a fundamental role in the exchange of substances at the cellular level and in determining the rate of chemical reactions. Recently, the classical picture that portrays diffusion as random uncorrelated motion of molecules has been revised, when it was shown that giant non-equilibrium fluctuations develop during diffusion processes. Under microgravity conditions and at steady-state, non-equilibrium fluctuations exhibit scale invariance and their size is only limited by the boundaries of the system. In this work, we investigate the onset of non-equilibrium concentration fluctuations induced by thermophoretic diffusion in microgravity, a regime not accessible to analytical calculations but of great relevance for the understanding of several natural and technological processes. A combination of state of the art simulations and experiments allows us to attain a fully quantitative description of the development of fluctuations during transient diffusion in microgravity. Both experiments and simulations show that during the onset the fluctuations exhibit scale invariance at large wave vectors. In a broader range of wave vectors simulations predict a spinodal-like growth of fluctuations, where the amplitude and length-scale of the dominant mode are determined by the thickness of the diffuse layer.

  8. Investigation into Improving Predictions of Channel Morphology: Scale Invariance Conditions of the One-Dimension Non-Equilibrium Bedload Transport Process

    NASA Astrophysics Data System (ADS)

    Carr, K. J.; Ercan, A.; Kavvas, M. L.

    2016-12-01

    While bedload is commonly accepted as contributing only 5 to 10% of the total sediment load in a stream, it is pivotal in describing channel morphology. Because bedload (rolling, sliding and saltating particles) often dominates bed-material load (the portion of the sediment load that interacts with the bed) accurate representations of bedload are central to understanding and predicting changes in channel shape and direction. Channel morphology can be effected by a variety of anthropogenic factors, some of which are acute and planned (hydraulic structures, diversions, restoration efforts). Physical scale modeling of proposed changes could serve to predict morphological consequences, and could compliment numerical modeling of the same, if scale errors are reduced. It is proposed that scale errors could be reduced through identification of the conditions under which non-equilibrium bedload sediment transport is self-similar and scale invariant. These conditions are investigated through application of the one-parameter Lie group of point scaling transformations to the one-dimensional non-equilibrium bedload transport process. Self-similarity conditions imposed due to initial and boundary conditions are also examined. The proposed scaling approach identifies the self-similarity conditions due to the initial and boundary conditions of the corresponding initial and boundary value problem, along with those due to the governing equations, thus expanding scaling of transport to unsteady non-equilibrium conditions.

  9. Water dissociation on Ni(100), Ni(110), and Ni(111) surfaces: Reaction path approach to mode selectivity

    DOE PAGES

    Seenivasan, H.; Jackson, Bret; Tiwari, Ashwani K.

    2017-02-17

    We performed a comparative study of mode-selectivity of water dissociation on Ni(100), Ni(110), and Ni(111) surfaces at the same level of theory using a fully quantum approach based on the reaction path Hamiltonian. Calculations show that the barrier to water dissociation on the Ni(110) surface is significantly lower compared to its close-packed counterparts. Transition states for this reaction on all three surfaces involve the elongation of one of the O–H bonds. Furthermore, a significant decrease in the symmetric stretching and bending mode frequencies near the transition state is observed in all three cases and in the vibrational adiabatic approximation, excitationmore » of these softened modes results in a significant enhancement in reactivity. Inclusion of non-adiabatic couplings between modes results in the asymmetric stretching mode showing a similar enhancement of reactivity as the symmetric stretching mode. Dissociation probabilities calculated at a surface temperature of 300 K showed higher reactivity at lower collision energies compared to that of the static surface case, underlining the importance of lattice motion in enhancing reactivity. Mode selective behavior is similar on all the surfaces. Molecules with one-quantum of vibrational excitation in the symmetric stretch, at lower energies (up to 0.45 eV), are more reactive on Ni(110) than the Ni(100) and Ni(111) surfaces. But, the dissociation probabilities approach saturation on all the surfaces at higher incident energy values. Ultimately, Ni(110) is found to be highly reactive toward water dissociation among the low-index nickel surfaces owing to a low reaction barrier resulting from the openness and corrugation of the surface. These results show that the mode-selective behavior does not vary with different crystal facets of Ni qualitatively, but there is a significant quantitative effect.« less

  10. Water dissociation on Ni(100), Ni(110), and Ni(111) surfaces: Reaction path approach to mode selectivity

    NASA Astrophysics Data System (ADS)

    Seenivasan, H.; Jackson, Bret; Tiwari, Ashwani K.

    2017-02-01

    A comparative study of mode-selectivity of water dissociation on Ni(100), Ni(110), and Ni(111) surfaces is performed at the same level of theory using a fully quantum approach based on the reaction path Hamiltonian. Calculations show that the barrier to water dissociation on the Ni(110) surface is significantly lower compared to its close-packed counterparts. Transition states for this reaction on all three surfaces involve the elongation of one of the O-H bonds. A significant decrease in the symmetric stretching and bending mode frequencies near the transition state is observed in all three cases and in the vibrational adiabatic approximation, excitation of these softened modes results in a significant enhancement in reactivity. Inclusion of non-adiabatic couplings between modes results in the asymmetric stretching mode showing a similar enhancement of reactivity as the symmetric stretching mode. Dissociation probabilities calculated at a surface temperature of 300 K showed higher reactivity at lower collision energies compared to that of the static surface case, underlining the importance of lattice motion in enhancing reactivity. Mode selective behavior is similar on all the surfaces. Molecules with one-quantum of vibrational excitation in the symmetric stretch, at lower energies (up to ˜0.45 eV), are more reactive on Ni(110) than the Ni(100) and Ni(111) surfaces. However, the dissociation probabilities approach saturation on all the surfaces at higher incident energy values. Overall, Ni(110) is found to be highly reactive toward water dissociation among the low-index nickel surfaces owing to a low reaction barrier resulting from the openness and corrugation of the surface. These results show that the mode-selective behavior does not vary with different crystal facets of Ni qualitatively, but there is a significant quantitative effect.

  11. Estimation of the dissociation rate of unlabelled ligand–receptor complexes by a ‘two-step’ competition binding approach

    PubMed Central

    Packeu, A; Wennerberg, M; Balendran, A; Vauquelin, G

    2010-01-01

    BACKGROUND AND PURPOSE Because the in vivo effectiveness of ligands may also be determined by the rate by which they dissociate from their target receptors, drug candidates are being increasingly screened for this kinetic property. The dissociation rate of unlabelled ligand–receptor complexes can be estimated indirectly from their ability to slow the association of subsequently added radioligand molecules. EXPERIMENTAL APPROACH We used the ‘two-step competition’ binding approach consisting of pre-incubating the receptor preparation with a wide range of ligand concentrations, washing off free ligand molecules, adding radioligand and monitoring its receptor binding after a fixed time. Based on the rationale that binding of both ligands is mutually exclusive and that they bind according to the law of mass action to a single class of sites, the unlabelled ligand's disociation rate can be estimated from the upward shift that the competition curve experiences after washing. KEY RESULTS The relevance of the ‘two-step competition’ approach was explored by computer simulations and by comparing the dissociation behaviour of unlabelled D2 dopamine and CB1 cannabinoid receptor antagonists in this and alternative approaches. Besides providing satisfactory estimations of dissociation rates, the method also detects the ability of the unlabelled ligand molecules to be released from ‘sinks’ such as the cell membrane. CONCLUSIONS AND IMPLICATIONS As the ‘two-step competition’ requires rapid intermediate washing steps and needs radioligand binding to be measured at only one time point, this approach is particularly suited for binding studies on intact plated cells. PMID:20946109

  12. Programmable thermal dissociation of reactive gaseous mercury - a potential approach to chemical speciation: results from a field study

    NASA Astrophysics Data System (ADS)

    Tatum Ernest, C.; Donohoue, D.; Bauer, D.; Ter Schure, A.; Hynes, A. J.

    2012-12-01

    The use of programmable thermal dissociation (PTD) as an approach to investigating the chemical speciation of reactive gaseous mercury (RGM, Hg2+) has been explored in a field study. In this approach RGM is collected on a denuder and analyzed using PTD. The denuder is placed in an oven and the dissociation of the RGM is measured, as a function of temperature, by monitoring the evolution of elemental mercury (GEM, Hg0) in real time using laser-induced fluorescence (LIF). The technique was tested in a field campaign at a coal-fired power plant in Pensacola, Florida. Uncoated tubular denuders were used to obtain samples from the plant's stack exhaust gases and from the stack plume, downwind of the stack using an airship. The PTD profiles from these samples were compared with PTD profiles of HgCl2.

  13. Dissociative Disorders

    MedlinePlus

    ... last minutes, hours, or rarely, months or years. Dissociative identity disorder. Formerly known as multiple personality disorder, this disorder ... each identity is with the others. People with dissociative identity disorder typically also have dissociative amnesia and often have ...

  14. Hypersonic Boundary Layer Transition Measurements Using NO2 approaches NO Photo-dissociation Tagging Velocimetry

    NASA Technical Reports Server (NTRS)

    Bathel, Brett F.; Johansen, Craig T.; Danehy, Paul M.; Inman, Jennifer A.; Jones, Stephen B.; Goyne, Christopher P.

    2011-01-01

    Measurements of instantaneous and mean streamwise velocity profiles in a hypersonic laminar boundary layer as well as a boundary layer undergoing laminar-to-turbulent transition were obtained over a 10-degree half-angle wedge model. A molecular tagging velocimetry technique consisting of a NO2 approaches?NO photo-dissociation reaction and two subsequent excitations of NO was used. The measurement of the transitional boundary layer velocity profiles was made downstream of a 1-mm tall, 4-mm diameter cylindrical trip along several lines lying within a streamwise measurement plane normal to the model surface and offset 6-mm from the model centerline. For laminar and transitional boundary layer measurements, the magnitudes of streamwise velocity fluctuations are compared. In the transitional boundary layer the fluctuations were, in general, 2-4 times larger than those in the laminar boundary layer. Of particular interest were fluctuations corresponding to a height of approximately 50% of the laminar boundary layer thickness having a magnitude of nearly 30% of the mean measured velocity. For comparison, the measured fluctuations in the laminar boundary layer were approximately 5% of the mean measured velocity at the same location. For the highest 10% signal-to-noise ratio data, average single-shot uncertainties using a 1 ?Es and 50 ?Es interframe delay were 115 m/s and 3 m/s, respectively. By averaging single-shot measurements of the transitional boundary layer, uncertainties in mean velocity as low as 39 m/s were obtained in the wind tunnel. The wall-normal and streamwise spatial resolutions were 0.14-mm (2 pixel) and 0.82-mm (11 pixels), respectively. These measurements were performed in the 31-inch Mach 10 Air Wind Tunnel at the NASA Langley Research Center.

  15. An Initial Non-Equilibrium Porous-Media Model for CFD Simulation of Stirling Regenerators

    NASA Technical Reports Server (NTRS)

    Tew, Roy; Simon, Terry; Gedeon, David; Ibrahim, Mounir; Rong, Wei

    2006-01-01

    The objective of this paper is to define empirical parameters (or closwre models) for an initial thermai non-equilibrium porous-media model for use in Computational Fluid Dynamics (CFD) codes for simulation of Stirling regenerators. The two CFD codes currently being used at Glenn Research Center (GRC) for Stirling engine modeling are Fluent and CFD-ACE. The porous-media models available in each of these codes are equilibrium models, which assmne that the solid matrix and the fluid are in thermal equilibrium at each spatial location within the porous medium. This is believed to be a poor assumption for the oscillating-flow environment within Stirling regenerators; Stirling 1-D regenerator models, used in Stirling design, we non-equilibrium regenerator models and suggest regenerator matrix and gas average temperatures can differ by several degrees at a given axial location end time during the cycle. A NASA regenerator research grant has been providing experimental and computational results to support definition of various empirical coefficients needed in defining a noa-equilibrium, macroscopic, porous-media model (i.e., to define "closure" relations). The grant effort is being led by Cleveland State University, with subcontractor assistance from the University of Minnesota, Gedeon Associates, and Sunpower, Inc. Friction-factor and heat-transfer correlations based on data taken with the NASAlSunpower oscillating-flow test rig also provide experimentally based correlations that are useful in defining parameters for the porous-media model; these correlations are documented in Gedeon Associates' Sage Stirling-Code Manuals. These sources of experimentally based information were used to define the following terms and parameters needed in the non-equilibrium porous-media model: hydrodynamic dispersion, permeability, inertial coefficient, fluid effective thermal conductivity (including themal dispersion and estimate of tortuosity effects}, and fluid-solid heat transfer

  16. The energy cascade in grid-generated non-equilibrium decaying turbulence

    NASA Astrophysics Data System (ADS)

    Valente, P. C.; Vassilicos, J. C.

    2015-04-01

    We investigate non-equilibrium turbulence where the non-dimensionalised dissipation coefficient Cɛ scales as C ɛ ˜ R eM m / R eℓ n with m ≈ 1 ≈ n (ReM and Reℓ are global/inlet and local Reynolds numbers, respectively) by measuring the downstream evolution of the scale-by-scale energy transfer, dissipation, advection, production, and transport in the lee of a square-mesh grid, and compare with a region where Cɛ ≈ constant. These are the main terms of the inhomogeneous, anisotropic version of the von Kármán-Howarth-Monin equation. It is shown in the grid-generated turbulence studied here that, even in the presence of non-negligible turbulence production and transport, production and transport are large-scale phenomena that do not contribute to the scale-by-scale balance for scales smaller than about a third of the integral-length scale, ℓ, and therefore do not affect the energy transfer to the small-scales. In both the non-equilibrium region where C ɛ ˜ R eM m / R eℓ n and further downstream where Cɛ ≈ constant, the peak of the scale-by-scale energy transfer scales as ( u2 ¯ ) 3 / 2 / ℓ ( u 2 ¯ is the variance of the longitudinal fluctuating velocity). In the non-equilibrium case, this scaling implies an imbalance between the energy transfer to the small scales and the dissipation. This imbalance is reflected on the small-scale advection which becomes larger in proportion to the maximum energy transfer as the turbulence decays whereas it stays proportionally constant in the further downstream region where Cɛ ≈ constant even though Reℓ is lower.

  17. Upscaling of transport processes in porous media with biofilms in non-equilibrium conditions

    NASA Astrophysics Data System (ADS)

    Orgogozo, Laurent; Golfier, Fabrice; Buès, Michel; Quintard, Michel

    2010-05-01

    In this work, we derive two different Darcy-scale models for the transport of biodegradable solutes in porous media containing a microbial biomass that developed under the form of a biofilm. Biofilms are composed of bacterial populations and extra cellular polymeric substances, and grow attached to a solid-fluid interface, e.g. the pore walls of a water-saturated porous medium. We begin with the pore-scale description of mass transport, mass transfer between phases (fluid phase - generally water - and biofilm phase) and biologically-mediated reactions. Then, two limit cases of non-equilibrium transport are identified and characterized. Finally, these processes are upscaled using the method of volume averaging to obtain two different macroscale mass balance models. The models are derived for specific cases of non-equilibrium reactive transport (i.e., spatial concentration gradients may exist in one or both phases), for which mechanisms of mass transfer or reaction kinetics limit the rate of biodegradation. In both cases, a one-equation model can be developed even if non-equilibrium conditions exist. The validity domains of the two considered transport models (the Reaction-Rate Limited Consumption model - RRLC model - and the Mass Transfer Limited Consumption model - MTLC model) are established in terms of reactive and hydrodynamic conditions of transport (Damköhler number and Péclet number). The RRLC model is found to be consistent with direct numerical simulation (DNS) results at high Péclet and Damköhler numbers, while the applicability of the MTLC model is limited to high Damköhler numbers but low Péclet numbers.

  18. Non-equilibrium thermodynamics, maximum entropy production and Earth-system evolution.

    PubMed

    Kleidon, Axel

    2010-01-13

    The present-day atmosphere is in a unique state far from thermodynamic equilibrium. This uniqueness is for instance reflected in the high concentration of molecular oxygen and the low relative humidity in the atmosphere. Given that the concentration of atmospheric oxygen has likely increased throughout Earth-system history, we can ask whether this trend can be generalized to a trend of Earth-system evolution that is directed away from thermodynamic equilibrium, why we would expect such a trend to take place and what it would imply for Earth-system evolution as a whole. The justification for such a trend could be found in the proposed general principle of maximum entropy production (MEP), which states that non-equilibrium thermodynamic systems maintain steady states at which entropy production is maximized. Here, I justify and demonstrate this application of MEP to the Earth at the planetary scale. I first describe the non-equilibrium thermodynamic nature of Earth-system processes and distinguish processes that drive the system's state away from equilibrium from those that are directed towards equilibrium. I formulate the interactions among these processes from a thermodynamic perspective and then connect them to a holistic view of the planetary thermodynamic state of the Earth system. In conclusion, non-equilibrium thermodynamics and MEP have the potential to provide a simple and holistic theory of Earth-system functioning. This theory can be used to derive overall evolutionary trends of the Earth's past, identify the role that life plays in driving thermodynamic states far from equilibrium, identify habitability in other planetary environments and evaluate human impacts on Earth-system functioning. This journal is © 2010 The Royal Society

  19. Response theory for non-equilibrium systems: theory and applications (Outstanding Young Scientist Lecture)

    NASA Astrophysics Data System (ADS)

    Lucarini, Valerio

    2010-05-01

    We consider the general response theory recently proposed by Ruelle for describing the impact of small perturbations to the non-equilibrium steady states resulting from Axiom A dynamical systems. We show that the causality of the response functions entails the possibility of writing a set of Kramers-Kronig (K-K) relations for the corresponding susceptibilities at all orders of nonlinearity, and specific results are provided for the case of arbitrary order harmonic response. These results shed light on the very general impact of considering the principle of causality for testing self-consistency: the described dispersion relations constitute unavoidable benchmarks that any experimental and model generated dataset must obey. These results, taking into account the chaotic hypothesis by Gallavotti and Cohen, might be relevant in several fields, including climate research. In particular, whereas the fluctuation-dissipation theorem does not work for non-equilibrium systems, because of the non-equivalence between internal and external fluctuations, K-K relations might be robust tools for the definition of a self-consistent theory of climate change. Along these lines, we present here the first evidence of the validity of these integral relations for the linear and the second harmonic response for the perturbed Lorenz 63 system, by showing that numerical simulations agree up to high degree of accuracy with the theoretical predictions. The numerical results confirm the conceptual validity of the nonlinear response theory, suggest that the theory can be extended for more general non equilibrium steady state systems, and shed new light on the applicability of very general tools, based only upon the principle of causality, for diagnosing the behavior of perturbed chaotic systems and reconstructing their output signals.

  20. NON-EQUILIBRIUM IONIZATION MODELING OF THE CURRENT SHEET IN A SIMULATED SOLAR ERUPTION

    SciTech Connect

    Shen Chengcai; Reeves, Katharine K.; Raymond, John C.; Murphy, Nicholas A.; Ko, Yuan-Kuen; Lin Jun; Mikic, Zoran; Linker, Jon A.

    2013-08-20

    The current sheet that extends from the top of flare loops and connects to an associated flux rope is a common structure in models of coronal mass ejections (CMEs). To understand the observational properties of CME current sheets, we generated predictions from a flare/CME model to be compared with observations. We use a simulation of a large-scale CME current sheet previously reported by Reeves et al. This simulation includes ohmic and coronal heating, thermal conduction, and radiative cooling in the energy equation. Using the results of this simulation, we perform time-dependent ionization calculations of the flow in a CME current sheet and construct two-dimensional spatial distributions of ionic charge states for multiple chemical elements. We use the filter responses from the Atmospheric Imaging Assembly (AIA) on the Solar Dynamics Observatory and the predicted intensities of emission lines to compute the count rates for each of the AIA bands. The results show differences in the emission line intensities between equilibrium and non-equilibrium ionization. The current sheet plasma is underionized at low heights and overionized at large heights. At low heights in the current sheet, the intensities of the AIA 94 A and 131 A channels are lower for non-equilibrium ionization than for equilibrium ionization. At large heights, these intensities are higher for non-equilibrium ionization than for equilibrium ionization inside the current sheet. The assumption of ionization equilibrium would lead to a significant underestimate of the temperature low in the current sheet and overestimate at larger heights. We also calculate the intensities of ultraviolet lines and predict emission features to be compared with events from the Ultraviolet Coronagraph Spectrometer on the Solar and Heliospheric Observatory, including a low-intensity region around the current sheet corresponding to this model.

  1. Kinetics of plasma-assisted combustion: effect of non-equilibrium excitation on the ignition and oxidation of combustible mixtures

    NASA Astrophysics Data System (ADS)

    Popov, N. A.

    2016-08-01

    A review of experimental and theoretical investigations of the effect of atomic particles, and electronically and vibrationally excited molecules on the induction delay time and on the shift in the ignition temperature threshold of combustible mixtures is presented. The addition of oxygen and hydrogen atoms to combustible mixtures may cause a significant reduction in the ignition delay time. However, at relatively low initial temperatures, the non-equilibrium effect of the addition of atomic particles in ground electronic states is not pronounced. At the same time, the effect of excited O(1D) atoms on the oxidation and reforming of combustible mixtures is quite significant due to the high rates of reactions of O(1D) atoms with hydrogen and hydrocarbon molecules. In fuel-air mixtures, collisions with O(1D) atoms determine, under certain conditions, the dissociation of hydrocarbon molecules. Singlet oxygen molecules, O2(a1Δ g ), participate both in chain initiation and chain branching reactions, but the effect of O2(a1Δ g ) on the ignition processes is generally less important compared to oxygen atoms. The reactions of vibrationally excited molecules and the processes of VT-relaxation in combustible mixtures are discussed. The production of vibrationally excited N 2(v) molecules in fuel-air mixtures at relatively low electric field is very important. However, at the moment, the effect of the reactions of N 2(v) molecules on the oxidation and ignition of combustible mixtures is not completely clear, and requires further investigation. Therefore, with present knowledge, to reduce the ignition delay time and decrease the temperature threshold of combustive mixtures, the use of gas discharge systems with relatively high E/N values is recommended. In this case the reactions of electronically excited {{\\text{N}}2}≤ft(\\text{A}{}3Σu+,\\text{B}{}3{{\\Pi}g},\\text{C}{}3{{\\Pi}u},\\text{a}{}\\prime 1Σu-\\right) molecules, and atomic particles in ground and

  2. Lyapunov Functions, Stationary Distributions, and Non-equilibrium Potential for Reaction Networks.

    PubMed

    Anderson, David F; Craciun, Gheorghe; Gopalkrishnan, Manoj; Wiuf, Carsten

    2015-09-01

    We consider the relationship between stationary distributions for stochastic models of reaction systems and Lyapunov functions for their deterministic counterparts. Specifically, we derive the well-known Lyapunov function of reaction network theory as a scaling limit of the non-equilibrium potential of the stationary distribution of stochastically modeled complex balanced systems. We extend this result to general birth-death models and demonstrate via example that similar scaling limits can yield Lyapunov functions even for models that are not complex or detailed balanced, and may even have multiple equilibria.

  3. Fundamental Properties of Non-equilibrium Laser-Supported Detonation Wave

    NASA Astrophysics Data System (ADS)

    Shiraishi, Hiroyuki

    2004-03-01

    For developing laser propulsion, it is very important to analyze the mechanism of Laser-Supported Detonation (LSD), because it can generate high pressure and high temperature to be used by laser propulsion can be categorized as one type of hypersonic reacting flows, where exothermicity is supplied not by chemical reaction but by radiation absorption. I have numerically simulated the 1-D and Quasi-1-D LSD waves propagating through an inert gas, which absorbs CO2 gasdynamic laser, using a 2-temperature model. Calculated results show the fundamental properties of the non-equilibrium LSD Waves.

  4. Non-equilibrium Numerical Analysis of Microwave-supported Detonation Threshold Propagating through Diatomic Gas

    NASA Astrophysics Data System (ADS)

    Shiraishi, Hiroyuki

    2015-09-01

    Microwave-supported Detonation (MSD), one type of Microwave-supported Plasma (MSP), is considered as one of the most important phenomena because it can generate high pressure and high temperature for beam-powered space propulsion systems. In this study, I numerically simulate MSD waves propagating through a diatomic gas. In order to evaluate the threshold of beam intensity, I use the physical-fluid dynamics scheme, which has been developed for simulating unsteady and non-equilibrium LSD waves propagating through a hydrogen gas.

  5. Non-equilibrium conformational dynamics in the function of molecular chaperones.

    PubMed

    Barducci, Alessandro; De Los Rios, Paolo

    2015-02-01

    Why do chaperones need ATP hydrolysis to help proteins reach their native, functional states? In this review, we highlight the most recent experimental and theoretical evidences suggesting that ATP hydrolysis allows molecular chaperones to escape the bounds imposed by equilibrium thermodynamics. We argue here that energy consumption must be fully taken into account to understand the mechanism of these intrinsically non-equilibrium machines and we propose a novel perspective in the way the relation between function and ATP hydrolysis is viewed. Copyright © 2015 Elsevier Ltd. All rights reserved.

  6. Diffusive-convective transition in the non-equilibrium charging of an electric double layer

    NASA Astrophysics Data System (ADS)

    Lobaskin, Vladimir; Netz, Roland R.

    2016-12-01

    We study the non-equilibrium electrolyte kinetics in a planar nanocapacitor that is driven by periodically switching surfaces charges using simulations, theory and scaling analysis. The combined effects of inter-ionic charge correlations and hydrodynamic interactions lead to correlated convective behavior for weakly charged ions. These dynamic correlations, signaling the breakdown of the Poisson-Nernst-Planck theory, are distinct from static correlations that are manifested by the crossover from Poisson-Boltzmann to strong-coupling theory that occurs as the ion valency increases.

  7. Multiple superconducting ring ratchets for ultrasensitive detection of non-equilibrium noises

    SciTech Connect

    Gurtovoi, V. L.; Exarchos, M.; Antonov, V. N.; Nikulov, A. V.; Tulin, V. A.

    2016-07-18

    Magnetic quantum periodicity in the dc voltage is observed when asymmetric rings are switched between superconducting and normal state by a noise or ac current. This quantum effect is used for the detection of a non-equilibrium noise using a system of 667 asymmetric aluminum rings of 1 μm diameter connected in series. Any noise down to the equilibrium one can be detected with large number of asymmetric rings. The equilibrium noise can induce the dc voltage close to the superconducting transition. In our sample we observe the dc voltage oscillation only below the superconducting transition.

  8. Magnetic field applied to thermochemical non-equilibrium reentry flows in 2D - five species

    NASA Astrophysics Data System (ADS)

    Sávio de Góes Maciel, Edisson

    2015-07-01

    In this work, a study involving magnetic field actuation over reentry flows in thermochemical non-equilibrium is performed. The Euler and Navier-Stokes equations are studied. The proposed numerical algorithm is centred and second-order accurate. The hypersonic flow around a blunt body is simulated. Three time integration methods are tested. The reactive simulations involve Earth atmosphere of five species. The work of Gaitonde is the reference to couple the fluid dynamics and Maxwell equations of electromagnetism. The results have indicated that the Maciel scheme, using the Mavriplis dissipation model, yields the best prediction of the stagnation pressure.

  9. Electron-Impact Excitation Cross Sections for Modeling Non-Equilibrium Gas

    NASA Technical Reports Server (NTRS)

    Huo, Winifred M.; Liu, Yen; Panesi, Marco; Munafo, Alessandro; Wray, Alan; Carbon, Duane F.

    2015-01-01

    In order to provide a database for modeling hypersonic entry in a partially ionized gas under non-equilibrium, the electron-impact excitation cross sections of atoms have been calculated using perturbation theory. The energy levels covered in the calculation are retrieved from the level list in the HyperRad code. The downstream flow-field is determined by solving a set of continuity equations for each component. The individual structure of each energy level is included. These equations are then complemented by the Euler system of equations. Finally, the radiation field is modeled by solving the radiative transfer equation.

  10. Ultrafast electron diffraction from non-equilibrium phonons in femtosecond laser heated Au films

    NASA Astrophysics Data System (ADS)

    Chase, T.; Trigo, M.; Reid, A. H.; Li, R.; Vecchione, T.; Shen, X.; Weathersby, S.; Coffee, R.; Hartmann, N.; Reis, D. A.; Wang, X. J.; Dürr, H. A.

    2016-01-01

    We use ultrafast electron diffraction to detect the temporal evolution of non-equilibrium phonons in femtosecond laser-excited ultrathin single-crystalline gold films. From the time-dependence of the Debye-Waller factor, we extract a 4.7 ps time-constant for the increase in mean-square atomic displacements. The observed increase in the diffuse scattering intensity demonstrates that the energy transfer from laser-heated electrons to phonon modes near the X and K points in the Au fcc Brillouin zone proceeds with timescales of 2.3 and 2.9 ps, respectively, faster than the Debye-Waller average mean-square displacement.

  11. Ultrafast electron diffraction from non-equilibrium phonons in femtosecond laser heated Au films

    SciTech Connect

    Chase, T.; Trigo, M.; Reid, A. H.; Dürr, H. A.; Li, R.; Vecchione, T.; Shen, X.; Weathersby, S.; Coffee, R.; Hartmann, N.; Wang, X. J.; Reis, D. A.

    2016-01-25

    We use ultrafast electron diffraction to detect the temporal evolution of non-equilibrium phonons in femtosecond laser-excited ultrathin single-crystalline gold films. From the time-dependence of the Debye-Waller factor, we extract a 4.7 ps time-constant for the increase in mean-square atomic displacements. The observed increase in the diffuse scattering intensity demonstrates that the energy transfer from laser-heated electrons to phonon modes near the X and K points in the Au fcc Brillouin zone proceeds with timescales of 2.3 and 2.9 ps, respectively, faster than the Debye-Waller average mean-square displacement.

  12. Virial Theorem and Non-Equilibrium Canonical-Dissipative Distributions Characterizing Parkinson Tremor

    NASA Astrophysics Data System (ADS)

    Frank, T. D.

    The virial theorem and the concept of canonical-statistical distributions represent two fundamental elements of statistical physics. We apply these concepts to hand tremor oscillations recorded from six Parkinson patients. We find that the virial theorem holds for Parkinson tremor oscillations. In contrast, we find that the concept of canonical distributions fails to a certain extent and needs to be replaced by the notion of non-canonical (i.e., canonical-dissipative) distributions. In doing so, our analysis reveals both general statistical aspects and non-equilibrium aspects of Parkinson hand tremor.

  13. Ultrafast electron diffraction from non-equilibrium phonons in femtosecond laser heated Au films

    SciTech Connect

    Chase, T.; Trigo, M.; Reid, A. H.; Li, R.; Vecchione, T.; Shen, X.; Weathersby, S.; Coffee, R.; Hartmann, N.; Reis, D. A.; Wang, X. J.; Dürr, H. A.

    2016-01-25

    We use ultrafast electron diffraction to detect the temporal evolution of non-equilibrium phonons in femtosecond laser-excited ultrathin single-crystalline gold films. From the time-dependence of the Debye-Waller factor, we extract a 4.7 ps time-constant for the increase in mean-square atomic displacements. The observed increase in the diffuse scattering intensity demonstrates that the energy transfer from laser-heated electrons to phonon modes near the X and K points in the Au fcc Brillouin zone proceeds with timescales of 2.3 and 2.9 ps, respectively, faster than the Debye-Waller average mean-square displacement.

  14. A Computer Code to Calculate Emission and Transmission of Infrared Radiation through Non-Equilibrium Atmospheres.

    DTIC Science & Technology

    1983-07-08

    CALCULATE Sinii.ItrmEMISSION AND TRANSMISSION OF INFRARED Sinii.Itrm RADIATION THROUGH NON-EQUILIBRIUM G. PERFORMING O1G. REPORT NUMBER ATMOSPHERES ERP ...8217 669.726-3 .9144J.1. *S4!468E+14 .S6d36E*14 .99414E414 *669.7265 .695eOE.1. .921910E+14 .94616E+14 .97342E414 ’ Saa hit.tZi!tt f.73 1Eti- .IMU1 -4 SIACIF+±4

  15. The impact of non-equilibrium microstructure on the mechanical response of polymer nanocomposites

    NASA Astrophysics Data System (ADS)

    Thomin, James D.

    2007-12-01

    Experiments have shown that polymer nanocomposites can have mechanical properties that are greatly reinforced compared to the pure polymer, or even to equivalent micro-composites. However, despite a wealth of experimental observations, exactly how this occurs is still under debate. Using Molecular Dynamics computer simulations, we have shown that three primary physical effects can be present, depending on the system specifics. First, attractive particle-polymer interactions lead to a slowing of polymer motion in the interfacial zone. This effect then leads to an overall increase in the stress relaxation curve, in proportion to the volume fraction of the interfacial zone. Second, at high volume fractions of particles, "jamming" can occur whereby the particles make direct contact. This leads to solid-like behavior that is not polymer-based. Jamming can also occur at low volume fractions when the polymer-particle attractions are strong enough that polymer molecules form a bound layer around the particles, increasing the effective diameter to above the percolation threshold. The third effect is polymer-based, and can result in the formation of a long-time plateau in the relaxation modulus, or a substantial increase in the entanglement plateau. It occurs when polymer-particle interactions are strong enough that polymers are immobilized on the particle surface, but at volume fractions where there is a separation between bulk and interfacial regions. When these conditions are met, interparticle bridges may form, which then lead to network reinforcement. These conditions are by nature non-equilibrium, meaning that there are glassy regions which do not relax within accessible time-scales. Therefore, the properties of the composite depend strongly on processing history. At the opposite extreme, when polymer-particle interactions are weak, non-equilibrium particle clustering occurs. In contrast to the melt structures which are glassy because of strong enthalpic interactions

  16. Synthesis of silane and silicon in a non-equilibrium plasma jet

    NASA Technical Reports Server (NTRS)

    Calcote, H. F.; Felder, W.

    1977-01-01

    The feasibility of using a non-equilibrium hydrogen plasma jet as a chemical synthesis tool was investigated. Four possible processes were identified for further study: (1) production of polycrystalline silicon photovoltaic surfaces, (2) production of SiHCl3 from SiCl4, (3) production of SiH4 from SiHCl3, and (4) purification of SiCl4 by metal impurity nucleation. The most striking result was the recognition that the strongly adhering silicon films, amorphous or polycrystalline, produced in our studies could be the basis for preparing a photovoltaic surface directly; this process has potential advantages over other vapor deposition processes.

  17. Evolution of non-equilibrium entanglement networks in spincast thin polymer films

    NASA Astrophysics Data System (ADS)

    Dalnoki-Veress, Kari; McGraw, Joshua; Fowler, Paul

    2012-02-01

    Measuring the rheology of non-equilibrium thin polymer films has received significant attention recently. Experiments are typically performed on thin polymer films that inherit their structure from spin coating. While the results of several rheological experiments paint a clear picture, details of molecular configurations in spincast polymer films are still unknown. Here we present the results of crazing measurements which demonstrate that the effective entanglement density of thin polymer films changes as a function of annealing toward a stable equilibrium value. The effective entanglement density plateaus with a time scale on the same order as the bulk reptation time.

  18. Non-equilibrium Phenomenon between Electron and Lattice Systems Induced by the Peltier Effect

    NASA Astrophysics Data System (ADS)

    Iwasaki, Hideo; Hori, Hidenobu; Sasaki, Shosuke

    2005-08-01

    Temperature distributions of the electron and lattice systems induced by the Peltier effect have been precisely measured by improved Harman method, where the temperature differences (Δ Tel and Δ Tla) have been independently evaluated for several terminal lengths (LV) in thermoelectric materials (Bi,Sb)2Te3. Both temperature distributions have different behaviors in the stationary state, that is, the LV dependences of Δ Tel and Δ Tla show positive and negative curvatures, respectively. It is also indicated that the temperature difference has a linear relation to LV in the whole system and the observed non-equilibrium phenomenon is consistent with a law of the conservation of heat quantity.

  19. Fundamental Properties of Non-equilibrium Laser-Supported Detonation Wave

    SciTech Connect

    Shiraishi, Hiroyuki

    2004-03-30

    For developing laser propulsion, it is very important to analyze the mechanism of Laser-Supported Detonation (LSD), because it can generate high pressure and high temperature to be used by laser propulsion can be categorized as one type of hypersonic reacting flows, where exothermicity is supplied not by chemical reaction but by radiation absorption. I have numerically simulated the 1-D and Quasi-1-D LSD waves propagating through an inert gas, which absorbs CO2 gasdynamic laser, using a 2-temperature model. Calculated results show the fundamental properties of the non-equilibrium LSD Waves.

  20. Remembrance of things past: non-equilibrium effects and the evolution of critical fluctuations near the QCD critical point

    NASA Astrophysics Data System (ADS)

    Mukherjee, Swagato; Venugopalan, Raju; Yin, Yi

    2016-12-01

    We report on recent progress in the study of the evolution of non-Gaussian cumulants of critical fluctuations. We explore the implications of non-equilibrium effects on the search for the QCD critical point.

  1. The adsorption and dissociation of water molecule on goethite (010) surface: A DFT approach

    NASA Astrophysics Data System (ADS)

    Zhou, Long; Xiu, Fangyuan; Qiu, Meng; Xia, Shuwei; Yu, Liangmin

    2017-01-01

    Using density functional theory (DFT) calculation, we investigate the configuration, stability and electronic properties of fresh cleaved (010) goethite surface (Pnma) and this surface exposed to water monolayer at low, medium and high coverage. Water is predicted to be chemisorbed to the surface, together with the surface reconstruction. The interaction energy of the most stable configuration of both low and medium coverage per water molecule is almost the same (-1.17 eV), while that of high coverage is much lower (less than 1.03 eV). It indicates that highly hydrated surface is less stable. PDOS analysis reveals the adsorption of H2O is due to the formation of Fesbnd O bond, caused by overlapping of Fe's 3d and O's 2p orbitals. Dissociation processes at low and medium water coverage are non-spontaneous; while at high coverage, it can undertake spontaneously both thermodynamically and dynamically. The dissociation paths of all three water coverage are the similar. The proton from one adsorbed water is likely to dissociate to bind to the vicinal surface μ3sbnd O as an intermediate product; the proton belonged to μ3sbnd O transferred to the neighbor surface μ2sbnd O as the dissociative configuration.

  2. A Symptom-Focused Hypnotic Approach to Accessing and Processing Previously Repressed/Dissociated Memories.

    ERIC Educational Resources Information Center

    Ratican, Kathleen L.

    1996-01-01

    The kinesthetic track back technique accesses the origins of current symptoms and may uncover previously repressed/dissociated material, if such material exists in the client's unconscious mind, is relevant to the symptoms, and is ready to be processed consciously. Case examples are given to illustrate proper use of this technique. (LSR)

  3. A Symptom-Focused Hypnotic Approach to Accessing and Processing Previously Repressed/Dissociated Memories.

    ERIC Educational Resources Information Center

    Ratican, Kathleen L.

    1996-01-01

    The kinesthetic track back technique accesses the origins of current symptoms and may uncover previously repressed/dissociated material, if such material exists in the client's unconscious mind, is relevant to the symptoms, and is ready to be processed consciously. Case examples are given to illustrate proper use of this technique. (LSR)

  4. Development of Non-Equilibrium Plasma-Flame Kinetic Mechanism and its Validation Using Gliding Arc Integrated with Counterflow Burner

    DTIC Science & Technology

    2010-02-21

    FINAL REPORT: FA9550-07-1-0136, Dec. 2006 – Nov. 2009 Development of Non-Equilibrium Plasma-Flame Kinetic Mechanism and its...Non-Equilibrium Plasma-Flame Kinetic 5a. CONTRACT NUMBER Mechanism and its Validation Using Gliding Arc Integrated with FA9550-07-1...DISTRIBUTION / AVAILABILITY STATEMENT 13. SUPPLEMENTARY NOTES Kinetic enhancements of NOx, O3, and O2(a1Δg) on ignition and flame propagation

  5. Potential and flux field landscape theory. II. Non-equilibrium thermodynamics of spatially inhomogeneous stochastic dynamical systems

    SciTech Connect

    Wu, Wei; Wang, Jin

    2014-09-14

    We have established a general non-equilibrium thermodynamic formalism consistently applicable to both spatially homogeneous and, more importantly, spatially inhomogeneous systems, governed by the Langevin and Fokker-Planck stochastic dynamics with multiple state transition mechanisms, using the potential-flux landscape framework as a bridge connecting stochastic dynamics with non-equilibrium thermodynamics. A set of non-equilibrium thermodynamic equations, quantifying the relations of the non-equilibrium entropy, entropy flow, entropy production, and other thermodynamic quantities, together with their specific expressions, is constructed from a set of dynamical decomposition equations associated with the potential-flux landscape framework. The flux velocity plays a pivotal role on both the dynamic and thermodynamic levels. On the dynamic level, it represents a dynamic force breaking detailed balance, entailing the dynamical decomposition equations. On the thermodynamic level, it represents a thermodynamic force generating entropy production, manifested in the non-equilibrium thermodynamic equations. The Ornstein-Uhlenbeck process and more specific examples, the spatial stochastic neuronal model, in particular, are studied to test and illustrate the general theory. This theoretical framework is particularly suitable to study the non-equilibrium (thermo)dynamics of spatially inhomogeneous systems abundant in nature. This paper is the second of a series.

  6. Potential and flux field landscape theory. II. Non-equilibrium thermodynamics of spatially inhomogeneous stochastic dynamical systems.

    PubMed

    Wu, Wei; Wang, Jin

    2014-09-14

    We have established a general non-equilibrium thermodynamic formalism consistently applicable to both spatially homogeneous and, more importantly, spatially inhomogeneous systems, governed by the Langevin and Fokker-Planck stochastic dynamics with multiple state transition mechanisms, using the potential-flux landscape framework as a bridge connecting stochastic dynamics with non-equilibrium thermodynamics. A set of non-equilibrium thermodynamic equations, quantifying the relations of the non-equilibrium entropy, entropy flow, entropy production, and other thermodynamic quantities, together with their specific expressions, is constructed from a set of dynamical decomposition equations associated with the potential-flux landscape framework. The flux velocity plays a pivotal role on both the dynamic and thermodynamic levels. On the dynamic level, it represents a dynamic force breaking detailed balance, entailing the dynamical decomposition equations. On the thermodynamic level, it represents a thermodynamic force generating entropy production, manifested in the non-equilibrium thermodynamic equations. The Ornstein-Uhlenbeck process and more specific examples, the spatial stochastic neuronal model, in particular, are studied to test and illustrate the general theory. This theoretical framework is particularly suitable to study the non-equilibrium (thermo)dynamics of spatially inhomogeneous systems abundant in nature. This paper is the second of a series.

  7. Modeling sulfur plugging of fractured wells under non-Darcy and non-equilibrium sulfur deposition

    NASA Astrophysics Data System (ADS)

    Qin, Peixin; Liu, Jingyan

    2017-06-01

    The issue of sulfur plugging has been a concern for engineers for a long time. Some conventional models for vertical wells have been presented by authors; however, analytical models of sulfur plugging for fractured wells have not been reported. Based on non-Darcy and non-equilibrium theory, this article presents a new sulfur deposition prediction model for fractured wells, and a new concept, named sulfur deposition equivalent wellbore radius (SDER), was induced into new equations to describe fractured well characteristics. In a conventional gas reservoir, the fracture conductivity is constant, but here it is changeable due to the presence of sulfur deposition. The SDER value will increase with the increasing fracture conductivity but will reach a stable point at a certain fracture conductivity value. The value of that stable point is equal to 0.5, which is just the value of the equivalent wellbore radius with infinite conductivity fractures. The influence of some important parameters on sulfur deposition was investigated, including gas production, relaxation time, water saturation, gas temperature, fracture conductivity, initial permeability, flow pressure, and radial distance. The results show that the plugging of the formation by deposited sulfur occurs later during the non-equilibrium process, occurs earlier when the flow rate is as high as expected, occurs earlier as the water saturation increases, occurs earlier under high temperature conditions, occurs earlier as the non-Darcy flow becomes stronger, and occurs earlier as the fracture conductivity becomes smaller.

  8. Non-equilibrium Thermodynamic Processes: Space Plasmas and the Inner Heliosheath

    NASA Astrophysics Data System (ADS)

    Livadiotis, G.; McComas, D. J.

    2012-04-01

    Recently, empirical kappa distribution, commonly used to describe non-equilibrium systems like space plasmas, has been connected with non-extensive statistical mechanics. Here we show how a consistent definition of the temperature and pressure is developed for stationary states out of thermal equilibrium, so that the familiar ideal gas state equation still holds. In addition to the classical triplet of temperature, pressure, and density, this generalization requires the kappa index as a fourth independent thermodynamic variable that characterizes the non-equilibrium stationary states. All four of these thermodynamic variables have key roles in describing the governing thermodynamical processes and transitions in space plasmas. We introduce a novel characterization of isothermal and isobaric processes that describe a system's transition into different stationary states by varying the kappa index. In addition, we show how the variation of temperature or/and pressure can occur through an "iso-q" process, in which the system remains in a fixed stationary state (fixed kappa index). These processes have been detected in the proton plasma in the inner heliosheath via specialized data analysis of energetic neutral atom (ENA) observations from Interstellar Boundary Explorer. In particular, we find that the temperature is highly correlated with (1) kappa, asymptotically related to isothermal (~1,000,000 K) and iso-q (κ ~ 1.7) processes; and (2) density, related to an isobaric process, which separates the "Ribbon," P ≈ 3.2 pdyn cm-2, from the globally distributed ENA flux, P ≈ 2 pdyn cm-2.

  9. Non-equilibrium disordered Bose gases: condensation, superfluidity and dynamical Bose glass

    NASA Astrophysics Data System (ADS)

    Chen, Lei; Liang, Zhaoxin; Hu, Ying; Zhang, Zhidong

    2016-01-01

    In an equilibrium three-dimensional (3D) disordered condensate, it is well established that disorder can generate an amount of normal fluid ρ n equaling to 4/3 of ρ ex , where ρ ex is a sum of interaction-induced quantum depletion and disorder-induced condensate deformation. The concept that the superfluid is more volatile to the existence of disorder than the condensate is crucial to the understanding of the Bose glass phase. In this work, we show that, by bringing a weakly disordered 3D condensate to non-equilibrium regime via a quantum quench in the interaction, disorder can destroy superfluid significantly more, leading to a steady state of Hamiltonian H f in which the ρ n far exceeds 4/3 of the ρ ex . This suggests the possibility of engineering Bose glass in the dynamic regime. Here, we refer to the dynamical Bose glass as the case where in the steady state of quenched condensate, the superfluid density goes to zero while the condensate density remains finite. As both the ρ n and ρ ex are measurable quantities, our results allow an experimental demonstration of the dramatized interplay between the disorder and interaction in the non-equilibrium scenario.

  10. Influence of dielectric materials on radial uniformity in non-equilibrium atmospheric pressure helium plasma

    NASA Astrophysics Data System (ADS)

    Oda, Akinori; Komori, Kyohei

    2015-09-01

    Non-equilibrium atmospheric pressure plasma has been utilized for various technological applications such as surface treatment, materials processing, bio-medical and bio-logical applications. For optimum control of the plasma for the above applications, numerous experimental and theoretical investigations on the plasma have been reported. Especially, controlling radial uniformity of the plasma are very important for utilizing materials processing. In this paper, an axially-symmetric three-dimensional fluid model, which is composed of the continuity equation for charged and neutral species, the Poisson equation, and the energy conservation equation for electrons, of non-equilibrium atmospheric pressure helium plasma has been developed. Then, influence of dielectric properties (e.g. relative permittivity, secondary electron emission coefficient, etc.) of dielectric materials on radial plasma uniformity (i.e. radial distributions of electron density, ion density, electric field in the plasma) was examined. This work was partly supported by KAKENHI (No. 26420247), and a ``Grant for Advanced Industrial Technology Development (No. 11B06004d)'' in 2011 from the New Energy and Industrial Technology Development Organization (NEDO) of Japan.

  11. Laser induced plasma on copper target, a non-equilibrium model

    SciTech Connect

    Oumeziane, Amina Ait Liani, Bachir; Parisse, Jean-Denis

    2014-02-15

    The aim of this work is to present a comprehensive numerical model for the UV laser ablation of metal targets, it focuses mainly on the prediction of laser induced plasma thresholds, the effect of the laser-plasma interaction, and the importance of the electronic non-equilibrium in the laser induced plume and its expansion in the background gas. This paper describes a set of numerical models for laser-matter interaction between 193-248 and 355 nm lasers and a copper target. Along with the thermal effects inside the material resulting from the irradiation of the latter with the pulsed laser, the laser-evaporated matter interaction and the plasma formation are thoroughly modelled. In the laser induced plume, the electronic nonequilibrium and the laser beam absorption have been investigated. Our calculations of the plasmas ignition thresholds on copper targets have been validated and compared to experimental as well as theoretical results. Comparison with experiment data indicates that our results are in good agreement with those reported in the literature. Furthermore, the inclusion of electronic non-equilibrium in our work indicated that this important process must be included in models of laser ablation and plasma plume formation.

  12. Numerical Simulation of Non-Equilibrium Plasma Discharge for High Speed Flow Control

    NASA Astrophysics Data System (ADS)

    Balasubramanian, Ramakrishnan; Anandhanarayanan, Karupannasamy; Krishnamurthy, Rajah; Chakraborty, Debasis

    2017-06-01

    Numerical simulation of hypersonic flow control using plasma discharge technique is carried out using an in-house developed code CERANS-TCNEQ. The study is aimed at demonstrating a proof of concept futuristic aerodynamic flow control device. The Kashiwa Hypersonic and High Temperature wind tunnel study of plasma discharge over a flat plate had been considered for numerical investigation. The 7-species, 18-reaction thermo-chemical non-equilibrium, two-temperature air-chemistry model due Park is used to model the weakly ionized flow. Plasma discharge is modeled as Joule heating source terms in both the translation-rotational and vibrational energy equations. Comparison of results for plasma discharge at Mach 7 over a flat plate with the reference data reveals that the present study is able to mimic the exact physics of complex flow such as formation of oblique shock wave ahead of the plasma discharge region with a resultant rise in surface pressure and vibrational temperature up to 7000 K demonstrating the use of non-equilibrium plasma discharge for flow control at hypersonic speeds.

  13. Non-Equilibrium Thermodynamic Analysis on the Performance of AN Irreversible Thermally Driven Brownian Motor

    NASA Astrophysics Data System (ADS)

    Gao, Tianfu; Chen, Jincan

    Based on the general model of thermally-driven Brownian motors, an equivalent cycle system is established and the Onsager coefficients and efficiency at the maximum power output of the system are analytically calculated from non-equilibrium thermodynamics. It is found that the Onsager reciprocity relation holds and the Onsager coefficients are affected by the main irreversibilities existing in practical systems. Only when the heat leak and the kinetic energy change of the particle in the system are negligible, can the determinant of the Onsager matrix vanish. It is also found that in the frame of non-equilibrium thermodynamics, the power output and efficiency of an irreversible Brownian motor can be expressed to be the same form as those of an irreversible Carnot heat engine, so the results obtained here are of general significance. Moreover, these results are used to analyze the performance characteristics of a class of thermally-driven Brownian motors so that some important conclusions in literature may be directly derived from the present paper.

  14. Giant THz photoconductivity and possible non-equilibrium superconductivity in metallic K3C60

    PubMed Central

    Mitrano, M.; Cantaluppi, A.; Nicoletti, D.; Kaiser, S.; Perucchi, A.; Lupi, S.; Di Pietro, P.; Pontiroli, D.; Riccò, M.; Clark, S. R.; Jaksch, D.; Cavalleri, A.

    2015-01-01

    The non-equilibrium control of emergent phenomena in solids is an important research frontier, encompassing effects like the optical enhancement of superconductivity 1 . Recently, nonlinear excitation 2 , 3 of certain phonons in bilayer cuprates was shown to induce superconducting-like optical properties at temperatures far above Tc 4,5,6. This effect was accompanied by the disruption of competing charge-density-wave correlations7,8, which explained some but not all of the experimental results. Here, we report a similar phenomenon in a very different compound. By exciting metallic K3C60 with mid-infrared optical pulses, we induce a large increase in carrier mobility, accompanied by the opening of a gap in the optical conductivity. Strikingly, these same signatures are observed at equilibrium when cooling metallic K3C60 below the superconducting transition temperature (Tc = 20 K). Although optical techniques alone cannot unequivocally identify non-equilibrium high-temperature superconductivity, we propose this scenario as a possible explanation of our results. PMID:26855424

  15. Non-equilibrium effect in the allosteric regulation of the bacterial flagellar switch

    NASA Astrophysics Data System (ADS)

    Wang, Fangbin; Shi, Hui; He, Rui; Wang, Renjie; Zhang, Rongjing; Yuan, Junhua

    2017-07-01

    The switching mechanism of the flagellar motor provides the basis for the motile behaviour of flagellated bacteria. Its highly sensitive response has previously been understood in terms of equilibrium models, either the classical two-state concerted allosteric model, or more generally, the Ising-type conformation spread model. Here, we systematically study motor switching under various load conditions from high to zero load, under different proton motive force (pmf) conditions and varying the number of torque-generating units (stators). In doing so, we reveal the signature of a non-equilibrium effect. To consistently account for the motor-switching dependence on each those conditions, a previously neglected non-equilibrium effect--the energy input from the motor torque--has to be incorporated into models of the flagellar switch. We further show that this effect increases the sensitivity of the flagellar switch. Exploiting a very small fraction of the energy expense of the flagellar motor for functional regulation increases its sensitivity greatly. Similar mechanisms are expected to be found in other protein complexes.

  16. Dynamic Wetting in a Non-Equilibrium Gas: The Effect of Gas Pressure on Air Entrainment

    NASA Astrophysics Data System (ADS)

    Sprittles, James

    2014-11-01

    Experimentally, it is now well established that lowering the pressure of an ambient gas can suppress wetting failures, or ``air entrainment,'' at a liquid-solid-gas moving contact-line in both coating processes and drop impact dynamics. In this work, we consider the possibility that non-equilibrium effects in the gas are responsible for such phenomena. These can be included into a continuum framework by allowing for slip at both the solid-gas and liquid-gas interfaces, caused by Knudsen layers attached to these boundaries, which is related to the mean free path in the gas, and hence the ambient pressure. This model has been incorporated into a computational framework developed for dynamic wetting phenomena, which resolves all scales in the problem, so that these new effects can be investigated. It is shown that reductions in gas pressure, and hence increases in slip, can dramatically modify the flow field in the gas-film in front of a moving contact-line so that air entrainment is prevented. Specifically, in a dip-coating setup it is shown that the new model (a) describes experimental results for the critical wetting speed at a given gas pressure and (b) allows us to identify new parameters associated with the non-equilibrium gas dynamics which govern the contact-line's motion.

  17. A note on non-equilibrium work fluctuations and equilibrium free energies

    NASA Astrophysics Data System (ADS)

    Suman Kalyan, M.; Anjan Prasad, G.; Sastry, V. S. S.; Murthy, K. P. N.

    2011-04-01

    We consider in this paper, a few important issues in non-equilibrium work fluctuations and their relations to equilibrium free energies. First we show that the Jarzynski identity can be viewed as a cumulant expansion of work. For a switching process which is nearly quasistatic the work distribution is sharply peaked and Gaussian. We show analytically that dissipation given by average work minus reversible work WR, decreases when the process becomes more and more quasistatic. Eventually, in the quasistatic reversible limit, the dissipation vanishes. However the estimate of p, the probability of violation of the second law given by the integral of the tail of the work distribution from -∞ to WR, increases and takes a value of 0.5 in the quasistatic limit. We show this analytically employing Gaussian integrals given by error functions and the Callen-Welton theorem that relates fluctuations to dissipation in process that is nearly quasistatic. Then we carry out Monte Carlo simulation of non-equilibrium processes in a liquid crystal system in the presence of an electric field and present results on reversible work, dissipation, probability of violation of the second law and distribution of work.

  18. Non-equilibrium dynamics and floral trait interactions shape extant angiosperm diversity

    PubMed Central

    O'Meara, Brian C.; Smith, Stacey D.; Armbruster, W. Scott; Harder, Lawrence D.; Hardy, Christopher R.; Hileman, Lena C.; Hufford, Larry; Litt, Amy; Magallón, Susana; Smith, Stephen A.; Stevens, Peter F.; Fenster, Charles B.; Diggle, Pamela K.

    2016-01-01

    Why are some traits and trait combinations exceptionally common across the tree of life, whereas others are vanishingly rare? The distribution of trait diversity across a clade at any time depends on the ancestral state of the clade, the rate at which new phenotypes evolve, the differences in speciation and extinction rates across lineages, and whether an equilibrium has been reached. Here we examine the role of transition rates, differential diversification (speciation minus extinction) and non-equilibrium dynamics on the evolutionary history of angiosperms, a clade well known for the abundance of some trait combinations and the rarity of others. Our analysis reveals that three character states (corolla present, bilateral symmetry, reduced stamen number) act synergistically as a key innovation, doubling diversification rates for lineages in which this combination occurs. However, this combination is currently less common than predicted at equilibrium because the individual characters evolve infrequently. Simulations suggest that angiosperms will remain far from the equilibrium frequencies of character states well into the future. Such non-equilibrium dynamics may be common when major innovations evolve rarely, allowing lineages with ancestral forms to persist, and even outnumber those with diversification-enhancing states, for tens of millions of years. PMID:27147092

  19. Fiber Bragg grating dynamic demodulation based on non-equilibrium interferometry

    NASA Astrophysics Data System (ADS)

    Yu, Qi; Jing, Zhenguo; Peng, Wei; Zhang, Xinpu; Liu, Yun; Xing, Chuanqi; Li, Hong; Yao, Wenjuan

    2011-12-01

    Non-equilibrium interferometric Fiber Bragg Grating (FBG) sensor is suitable for the accurate measurements of high-frequency dynamic stress, vibration, etc because of its high sensitivity and high frequency response compared to other types of FBG sensors. In this paper, a Phase Generation Carrier (PGC) demodulation technique of non-equilibrium interferometric FBG sensor that based on ARCTAN algorithm by using an arctangent algorithm with a simple method, has been investigated ,which can avoid the high-frequency noise increases, the error accumulation, the integrator signal jump of the integrator and other inherent weaknesses in the system. ARCTAN has a better response characteristic of the mutant signals, especially for low-frequency large-signal that can be demodulated with a greater range. The experimental result demonstrate that implementing measured resolution can up to 10nɛ/√Hz@500Hz in vibration strain, a signal sampling rate to 100 KHz and a frequency response range up to 1 KHz. This method can improve the performance of the system greatly which has potential significance for practical sensor application.

  20. Asymptotic analysis of discrete schemes for non-equilibrium radiation diffusion

    NASA Astrophysics Data System (ADS)

    Cui, Xia; Yuan, Guang-wei; Shen, Zhi-jun

    2016-05-01

    Motivated by providing well-behaved fully discrete schemes in practice, this paper extends the asymptotic analysis on time integration methods for non-equilibrium radiation diffusion in [2] to space discretizations. Therein studies were carried out on a two-temperature model with Larsen's flux-limited diffusion operator, both the implicitly balanced (IB) and linearly implicit (LI) methods were shown asymptotic-preserving. In this paper, we focus on asymptotic analysis for space discrete schemes in dimensions one and two. First, in construction of the schemes, in contrast to traditional first-order approximations, asymmetric second-order accurate spatial approximations are devised for flux-limiters on boundary, and discrete schemes with second-order accuracy on global spatial domain are acquired consequently. Then by employing formal asymptotic analysis, the first-order asymptotic-preserving property for these schemes and furthermore for the fully discrete schemes is shown. Finally, with the help of manufactured solutions, numerical tests are performed, which demonstrate quantitatively the fully discrete schemes with IB time evolution indeed have the accuracy and asymptotic convergence as theory predicts, hence are well qualified for both non-equilibrium and equilibrium radiation diffusion.

  1. Novel non-equilibrium modelling of a DC electric arc in argon

    NASA Astrophysics Data System (ADS)

    Baeva, M.; Benilov, M. S.; Almeida, N. A.; Uhrlandt, D.

    2016-06-01

    A novel non-equilibrium model has been developed to describe the interplay of heat and mass transfer and electric and magnetic fields in a DC electric arc. A complete diffusion treatment of particle fluxes, a generalized form of Ohm’s law, and numerical matching of the arc plasma with the space-charge sheaths adjacent to the electrodes are applied to analyze in detail the plasma parameters and the phenomena occurring in the plasma column and the near-electrode regions of a DC arc generated in atmospheric pressure argon for current levels from 20 A up to 200 A. Results comprising electric field and potential, current density, heating of the electrodes, and effects of thermal and chemical non-equilibrium are presented and discussed. The current-voltage characteristic obtained is in fair agreement with known experimental data. It indicates a minimum for arc current of about 80 A. For all current levels, a field reversal in front of the anode accompanied by a voltage drop of (0.7-2.6) V is observed. Another field reversal is observed near the cathode for arc currents below 80 A.

  2. Single-molecule measurement of the effective temperature in non-equilibrium steady states

    NASA Astrophysics Data System (ADS)

    Dieterich, E.; Camunas-Soler, J.; Ribezzi-Crivellari, M.; Seifert, U.; Ritort, F.

    2015-11-01

    Temperature is a well-defined quantity for systems in equilibrium. For glassy systems, it has been extended to the non-equilibrium regime, showing up as an effective quantity in a modified version of the fluctuation-dissipation theorem. However, experimental evidence supporting this definition remains scarce. Here, we present the first direct experimental demonstration of the effective temperature by measuring correlations and responses in single molecules in non-equilibrium steady states generated under external random forces. We combine experiment, analytical theory and simulations for systems with different levels of complexity, ranging from a single bead in an optical trap to two-state and multiple-state DNA hairpins. From these data, we extract a unifying picture for the existence of an effective temperature based on the relative order of various timescales characterizing intrinsic relaxation and external driving. Our study thus introduces driven small systems as a fertile ground to address fundamental concepts in statistical physics, condensed-matter physics and biophysics.

  3. Turbulent diffusion from a heated line source in non-equilibrium grid turbulence

    NASA Astrophysics Data System (ADS)

    Nedic, Jovan; Tavoularis, Stavros

    2015-11-01

    We have investigated turbulent diffusion of heat injected passively from a line source in equilibrium and non-equilibrium grid-generated turbulence, which are, respectively, flows in which the value of the non-dimensional rate of kinetic energy dissipation is constant or changes with streamwise distance from the grid. We used three grids with uniform square meshes and one fractal square grid (FSG), all of the same solidity, to generate non-equilibrium and equilibrium turbulence in a wind-tunnel. The regular grids have mesh sizes that are comparable to the first (RG160), second (RG80) and fourth (RG18) iterations of the fractal grid. The heated line source was inserted on the centre-plane of the grids at either of two downstream locations or an upstream one and it spanned the entire width of the wind-tunnel. We found that RG160 produced the greatest heat diffusion, followed by FSG, RG80 and RG18, in this order. The apparent turbulent diffusivity produced by the four grids also decreased in the same order. These findings conform with Taylor's theory of diffusion by continuous movements. Moreover, the present study demonstrates that the fractal space-scale unfolding (SSU) mechanism does not apply to grids with the same solidity but different effective mesh sizes. Supported by NSERC.

  4. Stability of high-speed boundary layers in oxygen including chemical non-equilibrium effects

    NASA Astrophysics Data System (ADS)

    Klentzman, Jill; Tumin, Anatoli

    2013-11-01

    The stability of high-speed boundary layers in chemical non-equilibrium is examined. A parametric study varying the edge temperature and the wall conditions is conducted for boundary layers in oxygen. The edge Mach number and enthalpy ranges considered are relevant to the flight conditions of reusable hypersonic cruise vehicles. Both viscous and inviscid stability formulations are used and the results compared to gain insight into the effects of viscosity and thermal conductivity on the stability. It is found that viscous effects have a strong impact on the temperature and mass fraction perturbations in the critical layer and in the viscous sublayer near the wall. Outside of these areas, the perturbations closely match in the viscous and inviscid models. The impact of chemical non-equilibrium on the stability is investigated by analyzing the effects of the chemical source term in the stability equations. The chemical source term is found to influence the growth rate of the second Mack mode instability but not have much of an effect on the mass fraction eigenfunction for the flow parameters considered. This work was supported by the AFOSR/NASA/National Center for Hypersonic Laminar-Turbulent Transition Research.

  5. Non-equilibrium solid-to-plasma transition dynamics using XANES diagnostic

    NASA Astrophysics Data System (ADS)

    Dorchies, F.; Recoules, V.

    2016-10-01

    The advent of femtosecond lasers has shed new light on non-equilibrium high energy density physics. The ultrafast energy absorption by electrons and the finite rate of their energy transfer to the lattice creates non-equilibrium states of matter, triggering a new class of non-thermal processes from the ambient solid up to extreme conditions of temperature and pressure, referred as the warm dense matter regime. The dynamical interplay between electron and atomic structures is the key issue that drives the ultrafast phase transitions dynamics. Bond weakening or bond hardening are predicted, but strongly depends on the material considered. Many studies have been conducted but this physics is still poorly understood. The experimental tools used up-to-now have provided an incomplete insight. Pure optical techniques measure only indirectly atomic motion through changes in the dielectric function whereas X-ray or electron diffraction only probes the average long-range order. This review is dedicated to recent developments in time-resolved X-ray absorption near-edge spectroscopy, which is expected to give a more complete picture by probing simultaneously the modifications of the near-continuum electron and local atomic structures. Results are reported for three different types of metals (simple, transition and noble metals) in which a confrontation has been carried out between measurements and ab initio simulations.

  6. Equilibrium and non-equilibrium cluster phases in colloids with competing interactions.

    PubMed

    Mani, Ethayaraja; Lechner, Wolfgang; Kegel, Willem K; Bolhuis, Peter G

    2014-07-07

    The phase behavior of colloids that interact via competing interactions - short-range attraction and long-range repulsion - is studied by computer simulation. In particular, for a fixed strength and range of repulsion, the effect of the strength of an attractive interaction (ε) on the phase behavior is investigated at various colloid densities (ρ). A thermodynamically stable equilibrium colloidal cluster phase, consisting of compact crystalline clusters, is found below the fluid-solid coexistence line in the ε-ρ parameter space. The mean cluster size is found to linearly increase with the colloid density. At large ε and low densities, and at small ε and high densities, a non-equilibrium cluster phase, consisting of elongated Bernal spiral-like clusters, is observed. Although gelation can be induced either by increasing ε at constant density or vice versa, the gelation mechanism is different in either route. While in the ρ route gelation occurs via a glass transition of compact clusters, gelation in the ε route is characterized by percolation of elongated clusters. This study both provides the location of equilibrium and non-equilibrium cluster phases with respect to the fluid-solid coexistence, and reveals the dependencies of the gelation mechanism on the preparation route.

  7. Generalized Metropolis acceptance criterion for hybrid non-equilibrium molecular dynamics—Monte Carlo simulations

    SciTech Connect

    Chen, Yunjie; Roux, Benoît

    2015-01-14

    A family of hybrid simulation methods that combines the advantages of Monte Carlo (MC) with the strengths of classical molecular dynamics (MD) consists in carrying out short non-equilibrium MD (neMD) trajectories to generate new configurations that are subsequently accepted or rejected via an MC process. In the simplest case where a deterministic dynamic propagator is used to generate the neMD trajectories, the familiar Metropolis acceptance criterion based on the change in the total energy ΔE, min[1,  exp( − βΔE)], guarantees that the hybrid algorithm will yield the equilibrium Boltzmann distribution. However, the functional form of the acceptance probability is more complex when the non-equilibrium switching process is generated via a non-deterministic stochastic dissipative propagator coupled to a heat bath. Here, we clarify the conditions under which the Metropolis criterion remains valid to rigorously yield a proper equilibrium Boltzmann distribution within hybrid neMD-MC algorithm.

  8. Entropy production in photovoltaic-thermoelectric nanodevices from the non-equilibrium Green's function formalism.

    PubMed

    Michelini, Fabienne; Crépieux, Adeline; Beltako, Katawoura

    2017-05-04

    We discuss some thermodynamic aspects of energy conversion in electronic nanosystems able to convert light energy into electrical or/and thermal energy using the non-equilibrium Green's function formalism. In a first part, we derive the photon energy and particle currents inside a nanosystem interacting with light and in contact with two electron reservoirs at different temperatures. Energy conservation is verified, and radiation laws are discussed from electron non-equilibrium Green's functions. We further use the photon currents to formulate the rate of entropy production for steady-state nanosystems, and we recast this rate in terms of efficiency for specific photovoltaic-thermoelectric nanodevices. In a second part, a quantum dot based nanojunction is closely examined using a two-level model. We show analytically that the rate of entropy production is always positive, but we find numerically that it can reach negative values when the derived particule and energy currents are empirically modified as it is usually done for modeling realistic photovoltaic systems.

  9. Direct and Large Eddy Simulation of non-equilibrium wall-bounded turbulent flows

    NASA Astrophysics Data System (ADS)

    Park, Hee-Jun

    2005-11-01

    The performance of several existing SGS models in non-equilibrium wall-bounded turbulent flows is investigated through comparisons of LES and DNS. The test problem is a shear-driven three-dimensional turbulent channel flow at base Reτ˜210 established by impulsive motion of one of the channel walls in the spanwise direction with a spanwise velocity equal to 3/4 of the bulk mean velocity in the channel. The DNS and LES are performed using pseudo-spectral methods with resolutions of 128x128x129 and 32x64x65, respectively. The SGS models tested include the nonlinear Interactions Approximation model (NIA) [Haliloglu and Akhavan (2004)], the Dynamic Smagorinsky model (DSM) [Germano et al. (1991)], and the Dynamic Mixed Model (DMM) [Zang et al. (1993)]. The results show that NIA gives the best overall agreement with DNS. Both DMM and DSM over-predict the decay of the mean streamwise wall shear stress on the moving wall, while NIA gives results in close agreements with DNS. Similarly, NIA gives the best agreement with DNS in the prediction of the mean velocity, the higher-order turbulence statistics, and the lag angle between the mean shear and the turbulent shear stress. These results suggest that non-equilibrium wall-bounded turbulent flows can be accurately computed by LES with NIA as the SGS model.

  10. Reconstructing equilibrium entropy and enthalpy profiles from non-equilibrium pulling

    NASA Astrophysics Data System (ADS)

    Jeong, Daun; Andricioaei, Ioan

    2013-03-01

    The Jarzynski identity can be applied to instances when a microscopic system is pulled repeatedly but quickly along some coordinate, allowing the calculation of an equilibrium free energy profile along the pulling coordinate from a set of independent non-equilibrium trajectories. Using the formalism of Wiener stochastic path integrals in which we assign temperature-dependent weights to Langevin trajectories, we derive exact formulae for the temperature derivatives of the free energy profile. This leads naturally to analytical expressions for decomposing a free energy profile into equilibrium entropy and internal energy profiles from non-equilibrium pulling. This decomposition can be done from trajectories evolved at a unique temperature without repeating the measurement as done in finite-difference decompositions. Three distinct analytical expressions for the entropy-energy decomposition are derived: using a time-dependent generalization of the weighted histogram analysis method, a quasi-harmonic spring limit, and a Feynman-Kac formula. The three novel formulae of reconstructing the pair of entropy-energy profiles are exemplified by Langevin simulations of a two-dimensional model system prototypical for force-induced biomolecular conformational changes. Connections to single-molecule experimental means to probe the functionals needed in the decomposition are suggested.

  11. Contributions of equilibrium and non-equilibrium clusters to viscosity in concentrated protein solutions

    NASA Astrophysics Data System (ADS)

    Sarangapani, Prasad; Hudson, Steven; Pathak, Jai; Migler, Kalman

    2013-03-01

    Equilibrium and non-equilibrium clustering are ubiquitous phenomena in soft matter physics and are typically observed in systems ranging from colloidal suspensions to monoclonal antibodies (mAbs). Such phenomena are central to understanding and preventing irreversible aggregation in addition to controlling viscosity challenges related to formulation and drug delivery of protein therapeutics. Curiously, little work has been done in exploring the cluster size dependence of low-shear viscosity and intrinsic viscosity in protein solutions in a controlled manner. In this work, we carefully control cluster size of reversible and irreversible clusters formed by globular proteins or monoclonal antibodies over a concentration range of 2 mg/mL-500 mg/mL and pH from 3-9. We find a marked dependence of low-shear viscosity on cluster size using custom-designed silicon-based microfluidic viscometers. Measurements of cluster sizes using static light scattering reveal a correlation of low shear viscosity as well as intrinsic viscosity with the average cluster size. We model the composition dependence of viscosity for the case of equilibrium and non-equilibrium clusters using an adaptation of a model recently presented by Minton for protein mixtures.

  12. Multiple temperature kinetic model and gas-kinetic method for hypersonic non-equilibrium flow computations

    NASA Astrophysics Data System (ADS)

    Xu, Kun; He, Xin; Cai, Chunpei

    2008-07-01

    It is well known that for increasingly rarefied flowfields, the predictions from continuum formulation, such as the Navier-Stokes equations lose accuracy. For the high speed diatomic molecular flow in the transitional regime, the inaccuracies are partially attributed to the single temperature approximations in the Navier-Stokes equations. Here, we propose a continuum multiple temperature model based on the Bhatnagar-Gross-Krook (BGK) equation for the non-equilibrium flow computation. In the current model, the Landau-Teller-Jeans relaxation model for the rotational energy is used to evaluate the energy exchange between the translational and rotational modes. Due to the multiple temperature approximation, the second viscosity coefficient in the Navier-Stokes equations is replaced by the temperature relaxation term. In order to solve the multiple temperature kinetic model, a multiscale gas-kinetic finite volume scheme is proposed, where the gas-kinetic equation is numerically solved for the fluxes to update the macroscopic flow variables inside each control volume. Since the gas-kinetic scheme uses a continuous gas distribution function at a cell interface for the fluxes evaluation, the moments of a gas distribution function can be explicitly obtained for the multiple temperature model. Therefore, the kinetic scheme is much more efficient than the DSMC method, especially in the near continuum flow regime. For the non-equilibrium flow computations, i.e., the nozzle flow and hypersonic rarefied flow over flat plate, the computational results are validated in comparison with experimental measurements and DSMC solutions.

  13. Numerical Simulation of Non-Equilibrium Plasma Discharge for High Speed Flow Control

    NASA Astrophysics Data System (ADS)

    Balasubramanian, Ramakrishnan; Anandhanarayanan, Karupannasamy; Krishnamurthy, Rajah; Chakraborty, Debasis

    2016-06-01

    Numerical simulation of hypersonic flow control using plasma discharge technique is carried out using an in-house developed code CERANS-TCNEQ. The study is aimed at demonstrating a proof of concept futuristic aerodynamic flow control device. The Kashiwa Hypersonic and High Temperature wind tunnel study of plasma discharge over a flat plate had been considered for numerical investigation. The 7-species, 18-reaction thermo-chemical non-equilibrium, two-temperature air-chemistry model due Park is used to model the weakly ionized flow. Plasma discharge is modeled as Joule heating source terms in both the translation-rotational and vibrational energy equations. Comparison of results for plasma discharge at Mach 7 over a flat plate with the reference data reveals that the present study is able to mimic the exact physics of complex flow such as formation of oblique shock wave ahead of the plasma discharge region with a resultant rise in surface pressure and vibrational temperature up to 7000 K demonstrating the use of non-equilibrium plasma discharge for flow control at hypersonic speeds.

  14. Non-equilibrium dynamics and floral trait interactions shape extant angiosperm diversity.

    PubMed

    O'Meara, Brian C; Smith, Stacey D; Armbruster, W Scott; Harder, Lawrence D; Hardy, Christopher R; Hileman, Lena C; Hufford, Larry; Litt, Amy; Magallón, Susana; Smith, Stephen A; Stevens, Peter F; Fenster, Charles B; Diggle, Pamela K

    2016-05-11

    Why are some traits and trait combinations exceptionally common across the tree of life, whereas others are vanishingly rare? The distribution of trait diversity across a clade at any time depends on the ancestral state of the clade, the rate at which new phenotypes evolve, the differences in speciation and extinction rates across lineages, and whether an equilibrium has been reached. Here we examine the role of transition rates, differential diversification (speciation minus extinction) and non-equilibrium dynamics on the evolutionary history of angiosperms, a clade well known for the abundance of some trait combinations and the rarity of others. Our analysis reveals that three character states (corolla present, bilateral symmetry, reduced stamen number) act synergistically as a key innovation, doubling diversification rates for lineages in which this combination occurs. However, this combination is currently less common than predicted at equilibrium because the individual characters evolve infrequently. Simulations suggest that angiosperms will remain far from the equilibrium frequencies of character states well into the future. Such non-equilibrium dynamics may be common when major innovations evolve rarely, allowing lineages with ancestral forms to persist, and even outnumber those with diversification-enhancing states, for tens of millions of years.

  15. A non-equilibrium state diagram for liquid/fluid/particle mixtures.

    PubMed

    Velankar, Sachin S

    2015-11-21

    The equilibrium structures of ternary oil/water/surfactant systems are often represented within a triangular composition diagram with various regions of the triangle corresponding to different equilibrium states. We transplant this idea to ternary liquid/fluid/particle systems that are far from equilibrium. Liquid/liquid/particle mixtures or liquid/gas/particle mixtures yield a wide diversity of morphologies including Pickering emulsions, bijels, pendular aggregates, spherical agglomerates, capillary suspensions, liquid marbles, powdered liquids, and particle-stabilized foams. This paper argues that such ternary liquid/fluid/particle mixtures can be unified into a non-equilibrium state diagram. What is common among all these systems is that the morphology results from an interplay between the preferential wettability of the particles, capillarity, and viscous forces encountered during mixing. Therefore all such systems share certain universal features, regardless of the details of the particles or fluids used. These features guide the construction of a non-equilibrium state diagram which takes the form of a triangular prism, where each triangular cross-section of the prism corresponds to a different relative affinity of the particles towards the two fluids. We classify the prism into regions in which the various morphologies appear and also emphasize the major difference between systems in which the particles are fully-wetted by one of the fluids vs. partially-wetted by both fluids. We also discuss how the state diagram may change with mixing intensity or with interparticle attractions.

  16. Non-equilibrium Steady-State Behavior in a Scale-Free Quantum Network

    NASA Astrophysics Data System (ADS)

    Zhao, Jianshi; Price, Craig; Liu, Qi; Gemelke, Nathan

    We describe the nonequilibrium dynamics of a cold atomic gas held in a spatially random optical potential and gravity, subject to a controlled amount of dissipation in the form of an extremely slow dark-state laser cooling process. Reaching local kinetic temperatures below the 100nK scale, such systems provide a novel context for observing the non-equilibrium steady-state (NESS) behavior of a disordered quantum system. For sufficiently deep potentials and strong dissipation, this system can be modeled by a self-organized version of directed percolation, and exhibits power-law decay of phase-space density with time due to the presence of absorbing clusters with a wide distribution of entropy and coupling rates. In the absence of dissipation, such a model cannot apply, and we observe the crossover to exponential loss of phase-space density. We provide measurements of the power-law decay constant by observing the non-equilibrium motion of atoms over a ten-minute period, consistent with γ = 0 . 31 +/- 0 . 04 , and extract scaling of the absorbed number with dissipation rate, showing another power-law behavior, with exponent 0 . 5 +/- 0 . 2 over two decades of optical excitation probability.

  17. Verification of Onsager's reciprocal relations for evaporation and condensation using non-equilibrium molecular dynamics.

    PubMed

    Xu, J; Kjelstrup, S; Bedeaux, D; Røsjorde, A; Rekvig, L

    2006-07-01

    Non-equilibrium molecular dynamic (NEMD) simulations have been used to study heat and mass transfer across a vapor-liquid interface for a one-component system using a Lennard-Jones spline potential. It was confirmed that the relation between the surface tension and the surface temperature in the non-equilibrium system was the same as in equilibrium (local equilibrium). Interfacial transfer coefficients were evaluated for the surface, which expressed the heat and mass fluxes in temperature and chemical potential differences across the interfacial region (film). In this analysis it was assumed that the Onsager reciprocal relations were valid. In this paper we extend the number of simulations such that we can calculate all four interface film transfer coefficients along the whole liquid-vapor coexistence curve. We do this analysis both for the case where we use the measurable heat flux on the vapor side and for the case where we use the measurable heat flux on the liquid side. The most important result we found is that the coupling coefficients within the accuracy of the calculation are equal. This is the first verification of the validity of the Onsager relations for transport through a surface using molecular dynamics. The interfacial film transfer coefficients are found to be a function of the surface temperature alone. New expressions are given for the kinetic theory values of these coefficients which only depend on the surface temperature. The NEMD values were found to be in good agreement with these expressions.

  18. Non-Equilibrium Dynamics of C-QED Arrays in Strong Correlation Regime

    NASA Astrophysics Data System (ADS)

    Zhang, Xin-Ding; Li, Zhi-Hang; Zhang, Xiao-Ming

    2016-11-01

    Recently increasing interests are attracted in the physics of controlled arrays of nonlinear cavity resonators because of the rapid experimental progress achieved in cavity and circuit quantum electrodynamics (QED). For a driven-dissipative two-dimentional planar C-QED array, standard Markov master equation is generally used to study the dynamics of this system. However, when in the case that the on-site photon-photon interaction enters strong correlation regime, standard Markov master equation may lead to incorrect results. In this paper we study the non-equilibrium dynamics of a two-dimentional C-QED array, which is homogeneously pumped by an external pulse, at the same time dissipation exits. We study the evolution of the average photon number of a single cavity by deriving a modified master equation to. In comparison with the standard master equation, the numerical result obtained by our newly derived master equation shows significant difference for the non-equilibrium dynamics of the system.

  19. Non-equilibrium oxidation states of zirconium during early stages of metal oxidation

    SciTech Connect

    Ma, Wen; Senanayake, Sanjaya D.; Herbert, F. William; Yildiz, Bilge

    2015-03-11

    The chemical state of Zr during the initial, self-limiting stage of oxidation on single crystal zirconium (0001), with oxide thickness on the order of 1 nm, was probed by synchrotron x-ray photoelectron spectroscopy. Quantitative analysis of the Zr 3d spectrum by the spectrum reconstruction method demonstrated the formation of Zr1+, Zr2+, and Zr3+ as non-equilibrium oxidation states, in addition to Zr4+ in the stoichiometric ZrO2. This finding resolves the long-debated question of whether it is possible to form any valence states between Zr0 and Zr4+ at the metal-oxide interface. As a result, the presence of local strong electric fields and the minimization of interfacial energy are assessed and demonstrated as mechanisms that can drive the formation of these non-equilibrium valence states of Zr.

  20. Ground state properties and non-equilibrium dynamics of hard-core bosons confined on optical lattices

    NASA Astrophysics Data System (ADS)

    Rigol, Marcos; Muramatsu, Alejandro

    2004-03-01

    We study by means of an exact approach, a gas of hard core bosons (HCB) confined on optical lattices. The ground state properties of such systems are analyzed. Local incompressible phases appear in the system, like in the case of interacting soft-core bosons [1] and fermions [2,3]. The changes in momentum distribution function and in the natural orbitals (effective single particle states) introduced by the formation of such phases are analyzed. We also study non-equilibrium properties for those systems, which within our numerical approach can be obtained exactly for systems with 200 particles on lattices with 3000 sites. In particular we analyze the free expansion of the gas when it is released from the trap turning off the confining potential. We show that the expansion is non-trivial (as opposed to the fermionic case) and new features to be observed in the experiments are analyzed. [1] G. G. Batrouni, V. Rousseau, R. T. Scalettar, M. Rigol, A. Muramatsu, P. J. H. Denteneer, and M. Troyer, Phys. Rev. Lett. 89, 117203 (2002). [2] M. Rigol, A. Muramatsu, G. G. Batrouni, and R. T. Scalettar, Phys. Rev. Lett. 91, 130403 (2003). [3] M. Rigol and A. Muramatsu, cond-mat/0309670 (2003).

  1. Difficulty of long-standing n-type conductivity in equilibrium and non-equilibrium γ-CuCl: A first-principles study

    NASA Astrophysics Data System (ADS)

    Huang, Dan; Xu, Jin-Peng; Jiang, Jing-Wen; Zhao, Yu-Jun; Peng, Biao-Lin; Zhou, Wen-Zheng; Guo, Jin

    2017-09-01

    Doping asymmetry is a pervasive issue in wide band gap semiconductors. We demonstrated that γ-CuCl is one of them with an intrinsic p-type semiconductor by first-principles calculations. The valence band maximum of γ-CuCl is dominated by the antibonding state of Cu-3d and Cl-3p, resulting in a high energy position. We further find that Cu vacancy has a relatively low diffusion barrier in addition to its low formation energy, implying that the long-standing n-type conductivity is hard to realize in γ-CuCl even with non-equilibrium approaches.

  2. Lifetimes and wave functions of ozone metastable vibrational states near the dissociation limit in a full-symmetry approach

    NASA Astrophysics Data System (ADS)

    Lapierre, David; Alijah, Alexander; Kochanov, Roman; Kokoouline, Viatcheslav; Tyuterev, Vladimir

    2016-10-01

    Energies and lifetimes (widths) of vibrational states above the lowest dissociation limit of O163 were determined using a previously developed efficient approach, which combines hyperspherical coordinates and a complex absorbing potential. The calculations are based on a recently computed potential energy surface of ozone determined with a spectroscopic accuracy [Tyuterev et al., J. Chem. Phys. 139, 134307 (2013), 10.1063/1.4821638]. The effect of permutational symmetry on rovibrational dynamics and the density of resonance states in O3 is discussed in detail. Correspondence between quantum numbers appropriate for short- and long-range parts of wave functions of the rovibrational continuum is established. It is shown, by symmetry arguments, that the allowed purely vibrational (J =0 ) levels of O163 and O183, both made of bosons with zero nuclear spin, cannot dissociate on the ground-state potential energy surface. Energies and wave functions of bound states of the ozone isotopologue O163 with rotational angular momentum J =0 and 1 up to the dissociation threshold were also computed. For bound levels, good agreement with experimental energies is found: The rms deviation between observed and calculated vibrational energies is 1 cm-1. Rotational constants were determined and used for a simple identification of vibrational modes of calculated levels.

  3. Dispelling myths about dissociative identity disorder treatment: an empirically based approach.

    PubMed

    Brand, Bethany L; Loewenstein, Richard J; Spiegel, David

    2014-01-01

    Some claim that treatment for dissociative identity disorder (DID) is harmful. Others maintain that the available data support the view that psychotherapy is helpful. We review the empirical support for both arguments. Current evidence supports the conclusion that phasic treatment consistent with expert consensus guidelines is associated with improvements in a wide range of DID patients' symptoms and functioning, decreased rates of hospitalization, and reduced costs of treatment. Research indicates that poor outcome is associated with treatment that does not specifically involve direct engagement with DID self-states to repair identity fragmentation and to decrease dissociative amnesia. The evidence demonstrates that carefully staged trauma-focused psychotherapy for DID results in improvement, whereas dissociative symptoms persist when not specifically targeted in treatment. The claims that DID treatment is harmful are based on anecdotal cases, opinion pieces, reports of damage that are not substantiated in the scientific literature, misrepresentations of the data, and misunderstandings about DID treatment and the phenomenology of DID. Given the severe symptomatology and disability associated with DID, iatrogenic harm is far more likely to come from depriving DID patients of treatment that is consistent with expert consensus, treatment guidelines, and current research.

  4. Photodissociation of TEMPO-modified peptides: new approaches to radical-directed dissociation of biomolecules.

    PubMed

    Marshall, David L; Hansen, Christopher S; Trevitt, Adam J; Oh, Han Bin; Blanksby, Stephen J

    2014-03-14

    Radical-directed dissociation of gas phase ions is emerging as a powerful and complementary alternative to traditional tandem mass spectrometric techniques for biomolecular structural analysis. Previous studies have identified that coupling of 2-[(2,2,6,6-tetramethylpiperidin-1-oxyl)methyl]benzoic acid (TEMPO-Bz) to the N-terminus of a peptide introduces a labile oxygen-carbon bond that can be selectively activated upon collisional activation to produce a radical ion. Here we demonstrate that structurally-defined peptide radical ions can also be generated upon UV laser photodissociation of the same TEMPO-Bz derivatives in a linear ion-trap mass spectrometer. When subjected to further mass spectrometric analyses, the radical ions formed by a single laser pulse undergo identical dissociations as those formed by collisional activation of the same precursor ion, and can thus be used to derive molecular structure. Mapping the initial radical formation process as a function of photon energy by photodissociation action spectroscopy reveals that photoproduct formation is selective but occurs only in modest yield across the wavelength range (300-220 nm), with the photoproduct yield maximised between 235 and 225 nm. Based on the analysis of a set of model compounds, structural modifications to the TEMPO-Bz derivative are suggested to optimise radical photoproduct yield. Future development of such probes offers the advantage of increased sensitivity and selectivity for radical-directed dissociation.

  5. A non-equilibrium model for soil heating and moisture transport during extreme surface heating

    NASA Astrophysics Data System (ADS)

    Massman, W. J.

    2015-03-01

    With increasing use of prescribed fire by land managers and increasing likelihood of wildfires due to climate change comes the need to improve modeling capability of extreme heating of soils during fires. This issue is addressed here by developing a one-dimensional non-equilibrium model of soil evaporation and transport of heat, soil moisture, and water vapor, for use with surface forcing ranging from daily solar cycles to extreme conditions encountered during fires. The model employs a linearized Crank-Nicolson scheme for the conservation equations of energy and mass and its performance is evaluated against dynamic soil temperature and moisture observations obtained during laboratory experiments on soil samples exposed to surface heat fluxes ranging between 10 000 and 50 000 W m-2. The Hertz-Knudsen equation is the basis for constructing the model's non-equilibrium evaporative source term. The model includes a dynamic residual soil moisture as a function of temperature and soil water potential, which allows the model to capture some of the dynamic aspects of the strongly bound soil moisture that seems to require temperatures well beyond 150 °C to fully evaporate. Furthermore, the model emulates the observed increase in soil moisture ahead of the drying front and the hiatus in the soil temperature rise during the strongly evaporative stage of drying. It also captures the observed rapid evaporation of soil moisture that occurs at relatively low temperatures (50-90 °C). Sensitivity analyses indicate that the model's success results primarily from the use of a temperature and moisture potential dependent condensation coefficient in the evaporative source term. The model's solution for water vapor density (and vapor pressure), which can exceed one standard atmosphere, cannot be experimentally verified, but they are supported by results from (earlier and very different) models developed for somewhat different purposes and for different porous media. Overall, this non-equilibrium

  6. Transport in Proton Exchange Membranes for Fuel Cell Applications-A Systematic Non-Equilibrium Approach.

    PubMed

    Rangel-Cárdenas, Angie L; Koper, Ger J M

    2017-05-25

    We hypothesize that the properties of proton-exchange membranes for fuel cell applications cannot be described unambiguously unless interface effects are taken into account. In order to prove this, we first develop a thermodynamically consistent description of the transport properties in the membranes, both for a homogeneous membrane and for a homogeneous membrane with two surface layers in contact with the electrodes or holder material. For each subsystem, homogeneous membrane, and the two surface layers, we limit ourselves to four parameters as the system as a whole is considered to be isothermal. We subsequently analyze the experimental results on some standard membranes that have appeared in the literature and analyze these using the two different descriptions. This analysis yields relatively well-defined values for the homogeneous membrane parameters and estimates for those of the surface layers and hence supports our hypothesis. As demonstrated, the method used here allows for a critical evaluation of the literature values. Moreover, it allows optimization of stacked transport systems such as proton-exchange membrane fuel cell units where interfacial layers, such as that between the catalyst and membrane, are taken into account systematically.

  7. Equilibrium and non-equilibrium properties of the QGP in a magnetic field: a holographic approach

    NASA Astrophysics Data System (ADS)

    Critelli, Renato

    2017-04-01

    This manuscript reviews recent theoretical progress on the understanding of the quark gluon plasma in a magnetic field that I presented on the conference Hot Quarks 2016, held at South Padre Island, Texas, USA, 12-17 September 2016. It is shown that, using a holographic bottom-up Einstein-Maxwell-Dilaton model, one can have a good quantitative agreement with Lattice result for QCD equation of state and Polyakov loop with nonzero magnetic field. I also present results for the anisotropic shear viscosity ratio η||/η⊥, with the conclusion that η|| < η⊥ for non-zero magnetic field.

  8. Heat transfer in porous medium embedded with vertical plate: Non-equilibrium approach - Part B

    SciTech Connect

    Quadir, G. A. E-mail: gaquadir@gmail.com; Badruddin, Irfan Anjum

    2016-06-08

    This work is continuation of the paper Part A. Due to large number of results, the paper is divided into two section with section-A (Part A) discussing the effect of various parameters such as heat transfer coefficient parameter, thermal conductivity ratio etc. on streamlines and isothermal lines. Section-B highlights the heat transfer characteristics in terms of Nusselt number The Darcy model is employed to simulate the flow inside the medium. It is assumed that the heat transfer takes place by convection and radiation. The governing partial differential equations are converted into non-dimensional form and solved numerically using finite element method.

  9. Non-equilibrium Approach to Doping of Wide Bandgap materials by Molecular Beam Epitaxy. Final Report

    SciTech Connect

    Tamargo, M. C.; Neumark, G. F.

    2004-04-19

    It is well known that it has been difficult to obtain good bipolar doping in a wide bandgap semiconductors. Developed a new doping technique, involving use of a standard dopant, together with a ''co-dopant'' used to facilitate the introduction of the dopant, and have vastly alleviated this problem.

  10. Non-equilibrium atmospheric pressure microplasma jet: An approach to endoscopic therapies

    SciTech Connect

    Zuo, Xiao; Wei, Yu; Wei Chen, Long; Dong Meng, Yue; Collaboration: Plasma Medicine Team

    2013-08-15

    Atmospheric pressure microplasma jet generated in a long hollow core optical fiber is studied to verify the potential feasibility of endoscopic therapies. Thermal damage and electric shock to the human body were suppressed by two technical methods, i.e., the high-voltage resistant flexible tube wrapped on the optical fiber and a power resistor of 100 kΩ connected between the power supply and the copper foil electrode. Optical emission spectra analysis indicated that many kinds of active radicals like excited atomic O and OH, were generated in the microplasma jet. In addition, the applications of the microplasma jet on sterilization and lung cancer cell apoptosis were presented. After 5 min of exposures to the microplasma jet, the cell viability and the bacillus subtilis replication decreased to about 3% and zero, respectively. More investigations are needed to improve the plasma-aided endoscopic therapies.

  11. Non-equilibrium atmospheric pressure microplasma jet: An approach to endoscopic therapies

    NASA Astrophysics Data System (ADS)

    Zuo, Xiao; Wei, Yu; Wei Chen, Long; Dong Meng, Yue; Plasma Medicine Team

    2013-08-01

    Atmospheric pressure microplasma jet generated in a long hollow core optical fiber is studied to verify the potential feasibility of endoscopic therapies. Thermal damage and electric shock to the human body were suppressed by two technical methods, i.e., the high-voltage resistant flexible tube wrapped on the optical fiber and a power resistor of 100 kΩ connected between the power supply and the copper foil electrode. Optical emission spectra analysis indicated that many kinds of active radicals like excited atomic O and OH, were generated in the microplasma jet. In addition, the applications of the microplasma jet on sterilization and lung cancer cell apoptosis were presented. After 5 min of exposures to the microplasma jet, the cell viability and the bacillus subtilis replication decreased to about 3% and zero, respectively. More investigations are needed to improve the plasma-aided endoscopic therapies.

  12. Transport in Proton Exchange Membranes for Fuel Cell Applications—A Systematic Non-Equilibrium Approach

    PubMed Central

    Rangel-Cárdenas, Angie L.; Koper, Ger J. M

    2017-01-01

    We hypothesize that the properties of proton-exchange membranes for fuel cell applications cannot be described unambiguously unless interface effects are taken into account. In order to prove this, we first develop a thermodynamically consistent description of the transport properties in the membranes, both for a homogeneous membrane and for a homogeneous membrane with two surface layers in contact with the electrodes or holder material. For each subsystem, homogeneous membrane, and the two surface layers, we limit ourselves to four parameters as the system as a whole is considered to be isothermal. We subsequently analyze the experimental results on some standard membranes that have appeared in the literature and analyze these using the two different descriptions. This analysis yields relatively well-defined values for the homogeneous membrane parameters and estimates for those of the surface layers and hence supports our hypothesis. As demonstrated, the method used here allows for a critical evaluation of the literature values. Moreover, it allows optimization of stacked transport systems such as proton-exchange membrane fuel cell units where interfacial layers, such as that between the catalyst and membrane, are taken into account systematically. PMID:28772939

  13. Characterization of an Ion Mobility-Multiplexed Collision Induced Dissociation- Tandem Time-of-Flight Mass Spectrometry Approach

    SciTech Connect

    Ibrahim, Yehia M.; Prior, David C.; Baker, Erin Shammel; Smith, Richard D.; Belov, Mikhail E.

    2010-06-01

    The confidence in peptide (and protein) identifications with ion mobility spectrometry time-of-flight mass spectrometry (IMS-TOFMS) is expected to drastically improve with the addition of information from an efficient ion dissociation step prior to MS detection. High throughput IMS-TOFMS analysis imposes a strong need for multiplexed ion dissociation approaches where multiple precursor ions yield complex sets of fragment ions that are often intermingled with each other in both the drift time and m/z domains. We have developed and evaluated a novel approach for collision-induced dissociation (CID) with an IMS-TOFMS instrument. It has been shown that precursor ions activated inside an rf-device with an axial dc-electric field produce abundant fragment ions which are radially confined with the rf-field and collisionally cooled at an elevated pressure, resulting in high CID efficiencies comparable or higher than those measured in triple-quadrupole instruments We have also developed an algorithm for deconvoluting these complex multiplexed tandem MS spectra by clustering both the precursor and fragment ions into the matching drift time profiles and by effectively utilizing high mass measurement accuracy of the TOFMS. In a single IMS separation with a tryptic digest of bovine serum albumin (BSA), we have reliably identified 20 unique peptides using multiplexed CID approach downstream of the IMS separation. Peptides were identified based upon the correlation between the precursor and fragment drift time profiles and by matching the profile representative masses to those of in silico BSA tryptic peptides and their fragments. The false discovery rate (FDR) of peptide identifications from multiplexed MS/MS spectra was less than 1%.

  14. Non-equilibrium dynamics of atomic Fermi and Bose gas under lattice geometry transformation

    NASA Astrophysics Data System (ADS)

    Lai, Chen-Yen; Chien, Chih-Chun

    2015-03-01

    The tunability of ultra-cold atom experiments has provide a new arena of exploring quantum effect in both bosonic and fermonic system in and out of equilibrium. According to recent experiments, a triangular lattice can be dynamically tuned into a square or kagome lattice by adjusting frequency and focus point of laser beams. We simulate the dynamical properties of single component fermions and weakly interacting bosons under various transformation processes, including different ramping time scales, different ramping functions, and more importantly into different types of lattice geometry. A non-equilibrium steady state, which is not thermalized, is found in single component fermion system under different particle densities in both small size system and in the thermodynamic limit. In contras, weakly interacting bosons do not exhibit observable steady state behavior. This opens new opportunities of research on dynamical multi-band effects.

  15. Noise analysis of coaxial Schottky barrier carbon nanotube fets using non equilibrium Green's function formalism

    NASA Astrophysics Data System (ADS)

    Hassaninia, Iman; Ghayour, Rahim; Abiri, Habib; Sheikhi, Mohammad

    2009-12-01

    The effect of noise on the performance of Schottky Barrier Carbon Nanotube Field Effect Transistors (SB-CNTFETs) has been investigated under various bias conditions. In order to calculate the noise power spectral density, the Non-Equilibrium Green's Function formalism (NEGF) is used to obtain the transmission coefficient and the number of carriers inside the channel. Results are presented in two sections: In the first section the Hooge's empirical rule is used to investigate the flicker noise properties of SB-CNTFETs with defects in the gate oxide region, while in the second section the thermal and shot noise properties of SB-CNTFETs are studied. Finally, the best bias points in the ON and OFF states have been suggested according to the total noise power spectral density and the device signal to noise ratio.

  16. Entropy-based artificial viscosity stabilization for non-equilibrium Grey Radiation-Hydrodynamics

    SciTech Connect

    Delchini, Marc O. Ragusa, Jean C. Morel, Jim

    2015-09-01

    The entropy viscosity method is extended to the non-equilibrium Grey Radiation-Hydrodynamic equations. The method employs a viscous regularization to stabilize the numerical solution. The artificial viscosity coefficient is modulated by the entropy production and peaks at shock locations. The added dissipative terms are consistent with the entropy minimum principle. A new functional form of the entropy residual, suitable for the Radiation-Hydrodynamic equations, is derived. We demonstrate that the viscous regularization preserves the equilibrium diffusion limit. The equations are discretized with a standard Continuous Galerkin Finite Element Method and a fully implicit temporal integrator within the MOOSE multiphysics framework. The method of manufactured solutions is employed to demonstrate second-order accuracy in both the equilibrium diffusion and streaming limits. Several typical 1-D radiation-hydrodynamic test cases with shocks (from Mach 1.05 to Mach 50) are presented to establish the ability of the technique to capture and resolve shocks.

  17. Dynamic Implicit 3D Adaptive Mesh Refinement for Non-Equilibrium Radiation Diffusion

    SciTech Connect

    Philip, Bobby; Wang, Zhen; Berrill, Mark A; Rodriguez Rodriguez, Manuel; Pernice, Michael

    2014-01-01

    The time dependent non-equilibrium radiation diffusion equations are important for solving the transport of energy through radiation in optically thick regimes and find applications in several fields including astrophysics and inertial confinement fusion. The associated initial boundary value problems that are encountered exhibit a wide range of scales in space and time and are extremely challenging to solve. To efficiently and accurately simulate these systems we describe our research on combining techniques that will also find use more broadly for long term time integration of nonlinear multiphysics systems: implicit time integration for efficient long term time integration of stiff multiphysics systems, local control theory based step size control to minimize the required global number of time steps while controlling accuracy, dynamic 3D adaptive mesh refinement (AMR) to minimize memory and computational costs, Jacobian Free Newton Krylov methods on AMR grids for efficient nonlinear solution, and optimal multilevel preconditioner components that provide level independent linear solver convergence.

  18. A non-equilibrium thermodynamic model for tumor extracellular matrix with enzymatic degradation

    NASA Astrophysics Data System (ADS)

    Xue, Shi-Lei; Li, Bo; Feng, Xi-Qiao; Gao, Huajian

    2017-07-01

    The extracellular matrix (ECM) of a solid tumor not only affords scaffolding to support tumor architecture and integrity but also plays an essential role in tumor growth, invasion, metastasis, and therapeutics. In this paper, a non-equilibrium thermodynamic theory is established to study the chemo-mechanical behaviors of tumor ECM, which is modeled as a poroelastic polyelectrolyte consisting of a collagen network and proteoglycans. By using the principle of maximum energy dissipation rate, we deduce a set of governing equations for drug transport and mechanosensitive enzymatic degradation in ECM. The results reveal that osmosis is primarily responsible for the compression resistance of ECM. It is suggested that a well-designed ECM degradation can effectively modify the tumor microenvironment for improved efficiency of cancer therapy. The theoretical predictions show a good agreement with relevant experimental observations. This study aimed to deepen our understanding of tumor ECM may be conducive to novel anticancer strategies.

  19. Impurity-tuned non-equilibrium phase transition in a bacterial carpet

    NASA Astrophysics Data System (ADS)

    Hsiao, Yi-Teng; Wu, Kuan-Ting; Uchida, Nariya; Woon, Wei-Yen

    2016-05-01

    The effects of impurity on the non-equilibrium phase transition in Vibrio alginolyticus bacterial carpets are investigated through a position-sensitive-diode implemented optical tweezers-microsphere assay. The collective flow increases abruptly as we increase the rotation rate of flagella via Na+ concentration. The effects of impurities on the transition behavior are examined by mixing cells of a wild type strain (VIO5) with cells of a mutant strain (NMB136) in different swimming patterns. For dilute impurities, the transition point is shifted toward higher Na+ concentration. Increasing the impurities' ratio to over 0.25 leads to a significant drop in the collective force, suggesting a partial orientational order with a smaller correlation length.

  20. Non-equilibrium work distributions from fluctuating lattice-Boltzmann model

    NASA Astrophysics Data System (ADS)

    Nasarayya Chari, S. Siva; Murthy, K. P. N.

    2012-06-01

    We switch a system from an equilibrium to a non-equilibrium state, by changing the value of a macroscopic control variable as per a specified protocol. The distribution of work performed during the process is obtained for various switching times. The free energy difference (ΔF) is determined from the work fluctuation relation. Some of the work values in the ensemble shall be less than ΔF. We term these as the second law violating switching. We employ fluctuating lattice-Boltzmann model to simulate a switching experiment on an ideal gas system. Our results show that, the probability of violation of second law increases as the switching time increases and in the reversible limit goes to one-half. We explain this result by invoking Callen-Welton theorem.