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Sample records for non-markovian stochastic description

  1. Non-Markovian stochastic processes: colored noise.

    PubMed

    Łuczka, J

    2005-06-01

    We survey classical non-Markovian processes driven by thermal equilibrium or nonequilibrium (nonthermal) colored noise. Examples of colored noise are presented. For processes driven by thermal equilibrium noise, the fluctuation-dissipation relation holds. In consequence, the system has to be described by a generalized (integro-differential) Langevin equation with a restriction on the damping integral kernel: Its form depends on the correlation function of noise. For processes driven by nonequilibrium noise, there is no such a restriction: They are considered to be described by stochastic differential (Ito- or Langevin-type) equations with an independent noise term. For the latter, we review methods of analysis of one-dimensional systems driven by Ornstein-Uhlenbeck noise.

  2. Counting statistics of non-Markovian quantum stochastic processes.

    PubMed

    Flindt, Christian; Novotný, Tomás; Braggio, Alessandro; Sassetti, Maura; Jauho, Antti-Pekka

    2008-04-18

    We derive a general expression for the cumulant generating function (CGF) of non-Markovian quantum stochastic transport processes. The long-time limit of the CGF is determined by a single dominating pole of the resolvent of the memory kernel from which we extract the zero-frequency cumulants of the current using a recursive scheme. The finite-frequency noise is expressed not only in terms of the resolvent, but also initial system-environment correlations. As an illustrative example we consider electron transport through a dissipative double quantum dot for which we study the effects of dissipation on the zero-frequency cumulants of high orders and the finite-frequency noise.

  3. An alternative realization of the exact non-Markovian stochastic Schrödinger equation.

    PubMed

    Song, Kai; Song, Linze; Shi, Qiang

    2016-06-14

    Based on the path integral approach, we derive a new realization of the exact non-Markovian stochastic Schrödinger equation (SSE). The main difference from the previous non-Markovian quantum state diffusion (NMQSD) method is that the complex Gaussian stochastic process used for the forward propagation of the wave function is correlated, which may be used to reduce the amplitude of the non-Markovian memory term at high temperatures. The new SSE is then written into the recently developed hierarchy of pure states scheme, in a form that is more closely related to the hierarchical equation of motion approach. Numerical simulations are then performed to demonstrate the efficiency of the new method.

  4. Interpretation of non-Markovian stochastic Schroedinger equations as a hidden-variable theory

    SciTech Connect

    Gambetta, Jay; Wiseman, H.M.

    2003-12-01

    Do diffusive non-Markovian stochastic Schroedinger equations (SSEs) for open quantum systems have a physical interpretation? In a recent paper [Phys. Rev. A 66, 012108 (2002)] we investigated this question using the orthodox interpretation of quantum mechanics. We found that the solution of a non-Markovian SSE represents the state the system would be in at that time if a measurement was performed on the environment at that time, and yielded a particular result. However, the linking of solutions at different times to make a trajectory is, we concluded, a fiction. In this paper we investigate this question using the modal (hidden variable) interpretation of quantum mechanics. We find that the noise function z(t) appearing in the non-Markovian SSE can be interpreted as a hidden variable for the environment. That is, some chosen property (beable) of the environment has a definite value z(t) even in the absence of measurement on the environment. The non-Markovian SSE gives the evolution of the state of the system 'conditioned' on this environment hidden variable. We present the theory for diffusive non-Markovian SSEs that have as their Markovian limit SSEs corresponding to homodyne and heterodyne detection, as well as one which has no Markovian limit.

  5. Two-level system immersed in a photonic band-gap material: A non-Markovian stochastic Schroedinger-equation approach

    SciTech Connect

    Vega, Ines de; Alonso, Daniel; Gaspard, Pierre

    2005-02-01

    It is our aim to study the dynamics of a two-level atom immersed in the modified radiation field of a photonic band-gap material using non-Markovian stochastic Schroedinger equations. Up to now, such methodology has only been applied to toy models and not to physically realistic systems as the one presented here. In order to check its validity, we shall study several of the physical phenomena already described in the literature within non-Markovian master equations, such as the long-time-limit residual population in the excited level of the atom and the population inversion which occurs in the atomic system when applying an external laser field. In addition to the stochastic equation, we propose a non-Markovian master equation derived from the stochastic formalism, which in contrast to the current models of master equation preserves positivity. We propose a correlation function for the radiation field (environment) that captures many of the physically relevant aspects of the problem and describes the short-time behavior in a more accurate way than previously proposed ones. This characteristic permits a correct description of the fluctuations of the electromagnetic field, which in the stochastic formalism are represented by the noise, and a better description of the non-Markovian effects in the atomic dynamics. The methodology presented in this paper to apply stochastic Schroedinger equations can be followed to study more complex systems, like many-level atoms embedded in more complicated photonic band-gap structures.

  6. Stochastic simulation of dissipation and non-Markovian effects in open quantum systems.

    PubMed

    Lacroix, Denis

    2008-04-01

    The exact dynamics of a system coupled to an environment can be described by an integro-differential stochastic equation for the reduced density. The influence of the environment is incorporated through a mean field which is both stochastic and nonlocal in time and where the standard two-time correlation functions of the environment appear naturally. Since no approximation is made, the presented theory incorporates exactly dissipative and non-Markovian effects. Applications to the spin-boson model coupled to a heat bath with various coupling regimes and temperature show that the presented stochastic theory can be a valuable tool to simulate exactly the dynamics of open quantum systems. Links with the stochastic Schrödinger equation method and possible extensions to "imaginary time" propagation are discussed.

  7. Dynamics of time correlation functions and stochastic quantum trajectories methods in Non-Markovian systems

    SciTech Connect

    Alonso, Daniel; Vega, Ines de

    2010-06-15

    Open quantum systems are often encountered in many different physical situations. From quantum optics to statistical mechanics, they are fundamental in the understanding of a great variety of different phenomena. Some of the most common examples are the relaxation to equilibrium, the existence of nonequilibrium stationary states, and the dynamics of atoms in interaction with electromagnetic fields. A crucial step in the analysis is to consider the quantum open system and its environment as the two mutually interacting components of a larger isolated system. Thereafter, the so-called Markov approximation is often considered, which consists on assuming that the time scales associated to the dynamics of the quantum open system are larger than those of the environment. It is the interplay of the different time scales associated with the system and the environment what determines the validity of the different approximations made. In this paper we will discuss the dynamics of a open quantum system in contact with a reservoir when the Markov approximation is not valid, and we have to include some non-Markovian or memory effects.

  8. Exact Closed Master Equation for Gaussian Non-Markovian Dynamics.

    PubMed

    Ferialdi, L

    2016-03-25

    Non-Markovian master equations describe general open quantum systems when no approximation is made. We provide the exact closed master equation for the class of Gaussian, completely positive, trace preserving, non-Markovian dynamics. This very general result allows us to investigate a vast variety of physical systems. We show that the master equation for non-Markovian quantum Brownian motion is a particular case of our general result. Furthermore, we derive the master equation unraveled by a non-Markovian, dissipative stochastic Schrödinger equation, paving the way for the analysis of dissipative non-Markovian collapse models.

  9. Non-Markovian dynamics without using a quantum trajectory

    SciTech Connect

    Wu Chengjun; Li Yang; Zhu Mingyi; Guo Hong

    2011-05-15

    Open quantum systems interacting with structured environments is important and manifests non-Markovian behavior, which was conventionally studied using a quantum trajectory stochastic method. In this paper, by dividing the effects of the environment into two parts, we propose a deterministic method without using a quantum trajectory. This method is more efficient and accurate than the stochastic method in most Markovian and non-Markovian cases. We also extend this method to the generalized Lindblad master equation.

  10. Exact solution for a non-Markovian dissipative quantum dynamics.

    PubMed

    Ferialdi, Luca; Bassi, Angelo

    2012-04-27

    We provide the exact analytic solution of the stochastic Schrödinger equation describing a harmonic oscillator interacting with a non-Markovian and dissipative environment. This result represents an arrival point in the study of non-Markovian dynamics via stochastic differential equations. It is also one of the few exactly solvable models for infinite-dimensional systems. We compute the Green's function; in the case of a free particle and with an exponentially correlated noise, we discuss the evolution of Gaussian wave functions.

  11. Quantum measurements in continuous time, non-Markovian evolutions and feedback.

    PubMed

    Barchielli, Alberto; Gregoratti, Matteo

    2012-11-28

    In this article, we reconsider a version of quantum trajectory theory based on the stochastic Schrödinger equation with stochastic coefficients, which was mathematically introduced in the 1990s, and we develop it in order to describe the non-Markovian evolution of a quantum system continuously measured and controlled, thanks to a measurement-based feedback. Indeed, realistic descriptions of a feedback loop have to include delay and thus need a non-Markovian theory. The theory allows us to put together non-Markovian evolutions and measurements in continuous time, in agreement with the modern axiomatic formulation of quantum mechanics. To illustrate the possibilities of such a theory, we apply it to a two-level atom stimulated by a laser. We introduce closed loop control too, via the stimulating laser, with the aim of enhancing the 'squeezing' of the emitted light, or other typical quantum properties. Note that here we change the point of view with respect to the usual applications of control theory. In our model, the 'system' is the two-level atom, but we do not want to control its state, to bring the atom to a final target state. Our aim is to control the 'Mandel Q-parameter' and the spectrum of the emitted light; in particular, the spectrum is not a property at a single time, but involves a long interval of times (a Fourier transform of the autocorrelation function of the observed output is needed).

  12. Non-Markovianity in Randomized Benchmarking

    NASA Astrophysics Data System (ADS)

    Ball, Harrison; Stace, Tom M.; Biercuk, Michael J.

    2015-03-01

    Randomized benchmarking is routinely employed to recover information about the fidelity of a quantum operation by exploiting probabilistic twirling errors over an implementation of the Clifford group. Standard assumptions of Markovianity in the underlying noise environment, however, remain at odds with realistic, correlated noise encountered in real systems. We model single-qubit randomized benchmarking experiments as a sequence of ideal Clifford operations interleaved with stochastic dephasing errors, implemented as unitary rotations about σz. Successive error rotations map to a sequence of random variables whose correlations introduce non-Markovian effects emulating realistic colored-noise environments. The Markovian limit is recovered by turning off all correlations, reducing each error to an independent Gaussian-distributed random variable. We examine the dependence of the statistical distribution of fidelity outcomes on these noise correlations, deriving analytic expressions for probability density functions and related statistics for relevant fidelity metrics. This enables us to characterize and bear out the distinction between the Markovian and non-Markovian cases, with implications for interpretation and handling of experimental data.

  13. Experimental observation of weak non-Markovianity

    PubMed Central

    Bernardes, Nadja K.; Cuevas, Alvaro; Orieux, Adeline; Monken, C. H.; Mataloni, Paolo; Sciarrino, Fabio; Santos, Marcelo F.

    2015-01-01

    Non-Markovianity has recently attracted large interest due to significant advances in its characterization and its exploitation for quantum information processing. However, up to now, only non-Markovian regimes featuring environment to system backflow of information (strong non-Markovianity) have been experimentally simulated. In this work, using an all-optical setup we simulate and observe the so-called weak non-Markovian dynamics. Through full process tomography, we experimentally demonstrate that the dynamics of a qubit can be non-Markovian despite an always increasing correlation between the system and its environment which, in our case, denotes no information backflow. We also show the transition from the weak to the strong regime by changing a single parameter in the environmental state, leading us to a better understanding of the fundamental features of non-Markovianity. PMID:26627910

  14. A framework for the direct evaluation of large deviations in non-Markovian processes

    NASA Astrophysics Data System (ADS)

    Cavallaro, Massimo; Harris, Rosemary J.

    2016-11-01

    We propose a general framework to simulate stochastic trajectories with arbitrarily long memory dependence and efficiently evaluate large deviation functions associated to time-extensive observables. This extends the ‘cloning’ procedure of Giardiná et al (2006 Phys. Rev. Lett. 96 120603) to non-Markovian systems. We demonstrate the validity of this method by testing non-Markovian variants of an ion-channel model and the totally asymmetric exclusion process, recovering results obtainable by other means.

  15. Measuring and using non-Markovianity

    NASA Astrophysics Data System (ADS)

    Pineda, Carlos; Gorin, Thomas; Davalos, David; Wisniacki, Diego A.; García-Mata, Ignacio

    2016-02-01

    We construct measures for the non-Markovianity of quantum evolution with a physically meaningful interpretation. We first provide a general setting in the framework of channel capacities and propose two families of meaningful quantitative measures, based on the largest revival of a channel capacity, avoiding some drawbacks of other non-Markovianity measures. We relate the proposed measures to the task of information screening. This shows that the non-Markovianity of a quantum process may be used as a resource. Under these considerations, we analyze two paradigmatic examples, a qubit in a quantum environment with classically mixed dynamics and the Jaynes-Cummings model.

  16. Thermodynamic power of non-Markovianity

    PubMed Central

    Bylicka, Bogna; Tukiainen, Mikko; Chruściński, Dariusz; Piilo, Jyrki; Maniscalco, Sabrina

    2016-01-01

    The natural framework to discuss thermodynamics at the quantum level is the theory of open quantum systems. Memory effects arising from strong system-environment correlations may lead to information back-flow, that is non-Markovian behaviour. The relation between non-Markovianity and quantum thermodynamics has been until now largely unexplored. Here we show by means of Landauer’s principle that memory effects control the amount of work extraction by erasure in presence of realistic environments. PMID:27323947

  17. Energy backflow and non-Markovian dynamics

    NASA Astrophysics Data System (ADS)

    Guarnieri, G.; Uchiyama, C.; Vacchini, B.

    2016-01-01

    We explore the behavior in time of the energy exchange between a system of interest and its environment, together with its relationship to the non-Markovianity of the system dynamics. In order to evaluate the energy exchange we rely on the full counting statistics formalism, which we use to evaluate the first moment of its probability distribution. We focus in particular on the energy backflow from environment to system, to which we associate a suitable condition and quantifier, which enables us to draw a connection with a recently introduced notion of non-Markovianity based on information backflow. This quantifier is then studied in detail in the case of the spin-boson model, described within a second-order time-convolutionless approximation, observing that non-Markovianity allows for the observation of energy backflow. This analysis allows us to identify the parameters region in which energy backflow is higher.

  18. Non-Markovian relaxation of a three-level system: quantum trajectory approach.

    PubMed

    Jing, Jun; Yu, Ting

    2010-12-10

    The non-Markovian dynamics of a three-level quantum system coupled to a bosonic environment is a difficult problem due to the lack of an exact dynamic equation such as a master equation. We present for the first time an exact quantum trajectory approach to a dissipative three-level model. We have established a convolutionless stochastic Schrödinger equation called the time-local quantum state diffusion (QSD) equation without any approximations, in particular, without Markov approximation. Our exact time-local QSD equation opens a new avenue for exploring quantum dynamics for a higher dimensional quantum system coupled to a non-Markovian environment.

  19. Colloquium: Non-Markovian dynamics in open quantum systems

    NASA Astrophysics Data System (ADS)

    Breuer, Heinz-Peter; Laine, Elsi-Mari; Piilo, Jyrki; Vacchini, Bassano

    2016-04-01

    The dynamical behavior of open quantum systems plays a key role in many applications of quantum mechanics, examples ranging from fundamental problems, such as the environment-induced decay of quantum coherence and relaxation in many-body systems, to applications in condensed matter theory, quantum transport, quantum chemistry, and quantum information. In close analogy to a classical Markovian stochastic process, the interaction of an open quantum system with a noisy environment is often modeled phenomenologically by means of a dynamical semigroup with a corresponding time-independent generator in Lindblad form, which describes a memoryless dynamics of the open system typically leading to an irreversible loss of characteristic quantum features. However, in many applications open systems exhibit pronounced memory effects and a revival of genuine quantum properties such as quantum coherence, correlations, and entanglement. Here recent theoretical results on the rich non-Markovian quantum dynamics of open systems are discussed, paying particular attention to the rigorous mathematical definition, to the physical interpretation and classification, as well as to the quantification of quantum memory effects. The general theory is illustrated by a series of physical examples. The analysis reveals that memory effects of the open system dynamics reflect characteristic features of the environment which opens a new perspective for applications, namely, to exploit a small open system as a quantum probe signifying nontrivial features of the environment it is interacting with. This Colloquium further explores the various physical sources of non-Markovian quantum dynamics, such as structured environmental spectral densities, nonlocal correlations between environmental degrees of freedom, and correlations in the initial system-environment state, in addition to developing schemes for their local detection. Recent experiments addressing the detection, quantification, and control of

  20. Quantum Langevin approach for non-Markovian quantum dynamics of the spin-boson model

    NASA Astrophysics Data System (ADS)

    Zhou, Zheng-Yang; Chen, Mi; Yu, Ting; You, J. Q.

    2016-02-01

    One longstanding difficult problem in quantum dissipative dynamics is to solve the spin-boson model in a non-Markovian regime where a tractable systematic master equation does not exist. The spin-boson model is particularly important due to its crucial applications in quantum noise control and manipulation as well as its central role in developing quantum theories of open systems. Here we solve this important model by developing a non-Markovian quantum Langevin approach. By projecting the quantum Langevin equation onto the coherent states of the bath, we can derive a set of non-Markovian quantum Bloch equations containing no explicit noise variables. This special feature offers a tremendous advantage over the existing stochastic Schrödinger equations in numerical simulations. The physical significance and generality of our approach are briefly discussed.

  1. Generalization of Pairwise Models to non-Markovian Epidemics on Networks

    NASA Astrophysics Data System (ADS)

    Kiss, Istvan Z.; Röst, Gergely; Vizi, Zsolt

    2015-08-01

    In this Letter, a generalization of pairwise models to non-Markovian epidemics on networks is presented. For the case of infectious periods of fixed length, the resulting pairwise model is a system of delay differential equations, which shows excellent agreement with results based on stochastic simulations. Furthermore, we analytically compute a new R0 -like threshold quantity and an analytical relation between this and the final epidemic size. Additionally, we show that the pairwise model and the analytic results can be generalized to an arbitrary distribution of the infectious times, using integro-differential equations, and this leads to a general expression for the final epidemic size. By showing the rigorous link between non-Markovian dynamics and pairwise delay differential equations, we provide the framework for a more systematic understanding of non-Markovian dynamics.

  2. Non-Markovianity of Gaussian Channels.

    PubMed

    Torre, G; Roga, W; Illuminati, F

    2015-08-14

    We introduce a necessary and sufficient criterion for the non-Markovianity of Gaussian quantum dynamical maps based on the violation of divisibility. The criterion is derived by defining a general vectorial representation of the covariance matrix which is then exploited to determine the condition for the complete positivity of partial maps associated with arbitrary time intervals. Such construction does not rely on the Choi-Jamiolkowski representation and does not require optimization over states.

  3. Quantum metrology in non-Markovian environments.

    PubMed

    Chin, Alex W; Huelga, Susana F; Plenio, Martin B

    2012-12-07

    We analyze precision bounds for a local phase estimation in the presence of general, non-Markovian phase noise. We demonstrate that the metrological equivalence of product and maximally entangled states that holds under strictly Markovian dephasing fails in the non-Markovian case. Using an exactly solvable model of a physically realistic finite bandwidth dephasing environment, we demonstrate that the ensuing non-Markovian dynamics enables quantum correlated states to outperform metrological strategies based on uncorrelated states using otherwise identical resources. We show that this conclusion is a direct result of the coherent dynamics of the global state of the system and environment and therefore the obtained scaling with the number of particles, which surpasses the standard quantum limit but does not achieve Heisenberg resolution, possesses general validity that goes beyond specific models. This is in marked contrast with the situation encountered under general Markovian noise, where an arbitrarily small amount of noise is enough to restore the scaling dictated by the standard quantum limit.

  4. Non-Markovian effect on remote state preparation

    SciTech Connect

    Xu, Zhen-Yu; Liu, Chen; Luo, Shunlong; Zhu, Shiqun

    2015-05-15

    Memory effect of non-Markovian dynamics in open quantum systems is often believed to be beneficial for quantum information processing. In this work, we employ an experimentally controllable two-photon open system, with one photon experiencing a dephasing environment and the other being free from noise, to show that non-Markovian effect may also have a negative impact on quantum tasks such as remote state preparation: For a certain period of controlled time interval, stronger non-Markovian effect yields lower fidelity of remote state preparation, as opposed to the common wisdom that more information leads to better performance. As a comparison, a positive non-Markovian effect on the RSP fidelity with another typical non-Markovian noise is analyzed. Consequently, the observed dual character of non-Markovian effect will be of great importance in the field of open systems engineering.

  5. Long-time memory in non-Markovian evolutions

    SciTech Connect

    Chruscinski, Dariusz; Pascazio, Saverio

    2010-03-15

    If the dynamics of an open quantum system is non-Markovian, its asymptotic state strongly depends on the initial conditions, even if the dynamics possesses an invariant state. This is the very essence of memory effects. In particular, the asymptotic state can remember and partially preserve its initial entanglement. Interestingly, even if the non-Markovian evolution relaxes to an equilibrium state, this state needs not be invariant. Therefore, the noninvariance of equilibrium becomes a clear sign of non-Markovianity.

  6. Non-Markovian dynamics of quantum discord

    SciTech Connect

    Fanchini, F. F.; Caldeira, A. O.; Werlang, T.; Brasil, C. A.; Arruda, L. G. E.

    2010-05-15

    We evaluate the quantum discord dynamics of two qubits in independent and common non-Markovian environments. We compare the dynamics of entanglement with that of quantum discord. For independent reservoirs the quantum discord vanishes only at discrete instants whereas the entanglement can disappear during a finite time interval. For a common reservoir, quantum discord and entanglement can behave very differently with sudden birth of the former but not of the latter. Furthermore, in this case the quantum discord dynamics presents sudden changes in the derivative of its time evolution which is evidenced by the presence of kinks in its behavior at discrete instants of time.

  7. Non-Markovianity hinders Quantum Darwinism

    PubMed Central

    Galve, Fernando; Zambrini, Roberta; Maniscalco, Sabrina

    2016-01-01

    We investigate Quantum Darwinism and the emergence of a classical world from the quantum one in connection with the spectral properties of the environment. We use a microscopic model of quantum environment in which, by changing a simple system parameter, we can modify the information back flow from environment into the system, and therefore its non-Markovian character. We show that the presence of memory effects hinders the emergence of classical objective reality, linking these two apparently unrelated concepts via a unique dynamical feature related to decoherence factors. PMID:26786857

  8. Non-Markovianity hinders Quantum Darwinism.

    PubMed

    Galve, Fernando; Zambrini, Roberta; Maniscalco, Sabrina

    2016-01-20

    We investigate Quantum Darwinism and the emergence of a classical world from the quantum one in connection with the spectral properties of the environment. We use a microscopic model of quantum environment in which, by changing a simple system parameter, we can modify the information back flow from environment into the system, and therefore its non-Markovian character. We show that the presence of memory effects hinders the emergence of classical objective reality, linking these two apparently unrelated concepts via a unique dynamical feature related to decoherence factors.

  9. Non-Markovianity hinders Quantum Darwinism

    NASA Astrophysics Data System (ADS)

    Galve, Fernando; Zambrini, Roberta; Maniscalco, Sabrina

    2016-01-01

    We investigate Quantum Darwinism and the emergence of a classical world from the quantum one in connection with the spectral properties of the environment. We use a microscopic model of quantum environment in which, by changing a simple system parameter, we can modify the information back flow from environment into the system, and therefore its non-Markovian character. We show that the presence of memory effects hinders the emergence of classical objective reality, linking these two apparently unrelated concepts via a unique dynamical feature related to decoherence factors.

  10. Non-Markovianity-assisted steady state entanglement.

    PubMed

    Huelga, Susana F; Rivas, Ángel; Plenio, Martin B

    2012-04-20

    We analyze the steady state entanglement generated in a coherently coupled dimer system subject to dephasing noise as a function of the degree of Markovianity of the evolution. By keeping fixed the effective noise strength while varying the memory time of the environment, we demonstrate that non-Markovianity is an essential, quantifiable resource that may support the formation of steady state entanglement whereas purely Markovian dynamics governed by Lindblad master equations lead to separable steady states. This result illustrates possible mechanisms leading to long-lived entanglement in purely decohering, possibly local, environments. We present a feasible experimental demonstration of this noise assisted phenomenon using a system of trapped ions.

  11. Mean first-passage times of non-Markovian random walkers in confinement

    NASA Astrophysics Data System (ADS)

    Guérin, T.; Levernier, N.; Bénichou, O.; Voituriez, R.

    2016-06-01

    The first-passage time, defined as the time a random walker takes to reach a target point in a confining domain, is a key quantity in the theory of stochastic processes. Its importance comes from its crucial role in quantifying the efficiency of processes as varied as diffusion-limited reactions, target search processes or the spread of diseases. Most methods of determining the properties of first-passage time in confined domains have been limited to Markovian (memoryless) processes. However, as soon as the random walker interacts with its environment, memory effects cannot be neglected: that is, the future motion of the random walker does not depend only on its current position, but also on its past trajectory. Examples of non-Markovian dynamics include single-file diffusion in narrow channels, or the motion of a tracer particle either attached to a polymeric chain or diffusing in simple or complex fluids such as nematics, dense soft colloids or viscoelastic solutions. Here we introduce an analytical approach to calculate, in the limit of a large confining volume, the mean first-passage time of a Gaussian non-Markovian random walker to a target. The non-Markovian features of the dynamics are encompassed by determining the statistical properties of the fictitious trajectory that the random walker would follow after the first-passage event takes place, which are shown to govern the first-passage time kinetics. This analysis is applicable to a broad range of stochastic processes, which may be correlated at long times. Our theoretical predictions are confirmed by numerical simulations for several examples of non-Markovian processes, including the case of fractional Brownian motion in one and higher dimensions. These results reveal, on the basis of Gaussian processes, the importance of memory effects in first-passage statistics of non-Markovian random walkers in confinement.

  12. Entanglement and non-markovianity of quantum evolutions.

    PubMed

    Rivas, Angel; Huelga, Susana F; Plenio, Martin B

    2010-07-30

    We address the problem of quantifying the non-markovian character of quantum time evolutions of general systems in contact with an environment. We introduce two different measures of non-markovianity that exploit the specific traits of quantum correlations and are suitable for opposite experimental contexts. When complete tomographic knowledge about the evolution is available, our measure provides a necessary and sufficient condition to quantify strictly the non-markovianity. In the opposite case, when no information whatsoever is available, we propose a sufficient condition for non-markovianity. Remarkably, no optimization procedure underlies our derivation, which greatly enhances the practical relevance of the proposed criteria.

  13. Solvable non-Markovian dynamic network

    NASA Astrophysics Data System (ADS)

    Georgiou, Nicos; Kiss, Istvan Z.; Scalas, Enrico

    2015-10-01

    Non-Markovian processes are widespread in natural and human-made systems, yet explicit modeling and analysis of such systems is underdeveloped. We consider a non-Markovian dynamic network with random link activation and deletion (RLAD) and heavy-tailed Mittag-Leffler distribution for the interevent times. We derive an analytically and computationally tractable system of Kolmogorov-like forward equations utilizing the Caputo derivative for the probability of having a given number of active links in the network and solve them. Simulations for the RLAD are also studied for power-law interevent times and we show excellent agreement with the Mittag-Leffler model. This agreement holds even when the RLAD network dynamics is coupled with the susceptible-infected-susceptible spreading dynamics. Thus, the analytically solvable Mittag-Leffler model provides an excellent approximation to the case when the network dynamics is characterized by power-law-distributed interevent times. We further discuss possible generalizations of our result.

  14. Optomechanical cooling in the non-Markovian regime

    NASA Astrophysics Data System (ADS)

    Zhang, Wen-Zhao; Cheng, Jiong; Li, Wen-Dong; Zhou, Ling

    2016-06-01

    We propose a scheme in which the cooling of a mechanical resonator is achieved by exposing the optomechanical system to a non-Markovian environment. Because of the backflow from the non-Markovian environment, the phonon number can go beyond the conventional cooling limit in a Markovian environment. Utilizing the spectrum density obtained in a recent experiment [S. Gröblacher et al., Nat. Commun. 6, 7606 (2015)], 10.1038/ncomms8606, we show that the cooling process is highly effective in a non-Markovian environment. Analysis of the cooling mechanism in a non-Markovian environment reveals that the non-Markovian memory effect is instrumental in the cooling process.

  15. Exploiting Non-Markovianity for Quantum Control

    NASA Astrophysics Data System (ADS)

    Reich, Daniel M.; Katz, Nadav; Koch, Christiane P.

    2015-07-01

    Quantum technology, exploiting entanglement and the wave nature of matter, relies on the ability to accurately control quantum systems. Quantum control is often compromised by the interaction of the system with its environment since this causes loss of amplitude and phase. However, when the dynamics of the open quantum system is non-Markovian, amplitude and phase flow not only from the system into the environment but also back. Interaction with the environment is then not necessarily detrimental. We show that the back-flow of amplitude and phase can be exploited to carry out quantum control tasks that could not be realized if the system was isolated. The control is facilitated by a few strongly coupled, sufficiently isolated environmental modes. Our paradigmatic example considers a weakly anharmonic ladder with resonant amplitude control only, restricting realizable operations to SO(N). The coupling to the environment, when harnessed with optimization techniques, allows for full SU(N) controllability.

  16. Classical non-Markovian Boltzmann equation

    SciTech Connect

    Alexanian, Moorad

    2014-08-01

    The modeling of particle transport involves anomalous diffusion, (x²(t) ) ∝ t{sup α} with α ≠ 1, with subdiffusive transport corresponding to 0 < α < 1 and superdiffusive transport to α > 1. These anomalies give rise to fractional advection-dispersion equations with memory in space and time. The usual Boltzmann equation, with only isolated binary collisions, is Markovian and, in particular, the contributions of the three-particle distribution function are neglected. We show that the inclusion of higher-order distribution functions give rise to an exact, non-Markovian Boltzmann equation with resulting transport equations for mass, momentum, and kinetic energy with memory in both time and space. The two- and the three-particle distribution functions are considered under the assumption that the two- and the three-particle correlation functions are translationally invariant that allows us to obtain advection-dispersion equations for modeling transport in terms of spatial and temporal fractional derivatives.

  17. Non-Markovian dynamics of a qubit

    SciTech Connect

    Maniscalco, Sabrina; Petruccione, Francesco

    2006-01-15

    In this paper we investigate the non-Markovian dynamics of a qubit by comparing two generalized master equations with memory. In the case of a thermal bath, we derive the solution of the recently proposed post-Markovian master equation [A. Shabani and D. A. Lidar, Phys. Rev. A 71, 020101(R) (2005)] and we study the dynamics for an exponentially decaying memory kernel. We compare the solution of the post-Markovian master equation with the solution of the typical memory kernel master equation. Our results lead to a new physical interpretation of the reservoir correlation function and bring to light the limits of usability of master equations with memory for the system under consideration.

  18. Classical non-Markovian Boltzmann equation

    NASA Astrophysics Data System (ADS)

    Alexanian, Moorad

    2014-08-01

    The modeling of particle transport involves anomalous diffusion, ⟨x2(t) ⟩ ∝ tα with α ≠ 1, with subdiffusive transport corresponding to 0 < α < 1 and superdiffusive transport to α > 1. These anomalies give rise to fractional advection-dispersion equations with memory in space and time. The usual Boltzmann equation, with only isolated binary collisions, is Markovian and, in particular, the contributions of the three-particle distribution function are neglected. We show that the inclusion of higher-order distribution functions give rise to an exact, non-Markovian Boltzmann equation with resulting transport equations for mass, momentum, and kinetic energy with memory in both time and space. The two- and the three-particle distribution functions are considered under the assumption that the two- and the three-particle correlation functions are translationally invariant that allows us to obtain advection-dispersion equations for modeling transport in terms of spatial and temporal fractional derivatives.

  19. Non-Markovian work fluctuation theorem in crossed electric and magnetic fields.

    PubMed

    Jiménez-Aquino, J I

    2015-08-01

    The validity of the transient work fluctuation theorem for a charged Brownian harmonic oscillator embedded in a non-Markovian heat bath and under the action of crossed electric and magnetic fields is investigated. The aforementioned theorem is verified to be valid within the context of the generalized Langevin equation with an arbitrary memory kernel and arbitrary dragging in the potential minimum. The fluctuation-dissipation relation of the second kind is assumed to be valid and shows that the non-Markovian stochastic dynamics associated with the particle, in the absence of the external time-dependent electric field, reaches an equilibrium state, as is precisely demanded by such a relation. The Jarzynski equality in this problem is also analyzed.

  20. Jump-diffusion unravelling of a non-Markovian generalized Lindblad master equation

    SciTech Connect

    Barchielli, A.; Pellegrini, C.

    2010-11-15

    The ''correlated-projection technique'' has been successfully applied to derive a large class of highly non-Markovian dynamics, the so called non-Markovian generalized Lindblad-type equations or Lindblad rate equations. In this article, general unravelings are presented for these equations, described in terms of jump-diffusion stochastic differential equations for wave functions. We show also that the proposed unraveling can be interpreted in terms of measurements continuous in time but with some conceptual restrictions. The main point in the measurement interpretation is that the structure itself of the underlying mathematical theory poses restrictions on what can be considered as observable and what is not; such restrictions can be seen as the effect of some kind of superselection rule. Finally, we develop a concrete example and discuss possible effects on the heterodyne spectrum of a two-level system due to a structured thermal-like bath with memory.

  1. Non-Markovianity: initial correlations and nonlinear optical measurements

    PubMed Central

    Dijkstra, Arend G.; Tanimura, Yoshitaka

    2012-01-01

    By extending the response function approach developed in nonlinear optics, we analytically derive an expression for the non-Markovianity in the time evolution of a system in contact with a quantum mechanical bath, and find a close connection with the directly observable nonlinear optical response. The result indicates that memory in the bath-induced fluctuations rather than in the dissipation causes non-Markovianity. Initial correlations between states of the system and the bath are shown to be essential for a correct understanding of the non-Markovianity. These correlations are included in our treatment through a preparation function. PMID:22753819

  2. Excitation energy transfer: Study with non-Markovian dynamics

    SciTech Connect

    Liang Xianting

    2010-11-15

    In this paper, we investigate the non-Markovian dynamics of a model to mimic the excitation energy transfer (EET) between chromophores in photosynthesis systems. The numerical path integral method is used. This method includes the non-Markovian effects of the environmental affects, and it does not need the perturbation approximation in solving the dynamics of systems of interest. It implies that the coherence helps the EET between chromophores through lasting the transfer time rather than enhancing the transfer rate of the EET. In particular, the non-Markovian environment greatly increases the efficiency of the EET in the photosynthesis systems.

  3. Quantum non-Markovianity: characterization, quantification and detection.

    PubMed

    Rivas, Ángel; Huelga, Susana F; Plenio, Martin B

    2014-09-01

    We present a comprehensive and up-to-date review of the concept of quantum non-Markovianity, a central theme in the theory of open quantum systems. We introduce the concept of a quantum Markovian process as a generalization of the classical definition of Markovianity via the so-called divisibility property and relate this notion to the intuitive idea that links non-Markovianity with the persistence of memory effects. A detailed comparison with other definitions presented in the literature is provided. We then discuss several existing proposals to quantify the degree of non-Markovianity of quantum dynamics and to witness non-Markovian behavior, the latter providing sufficient conditions to detect deviations from strict Markovianity. Finally, we conclude by enumerating some timely open problems in the field and provide an outlook on possible research directions.

  4. Non-Markovian Quantum Friction of Bright Solitons in Superfluids.

    PubMed

    Efimkin, Dmitry K; Hofmann, Johannes; Galitski, Victor

    2016-06-03

    We explore the quantum dynamics of a bright matter-wave soliton in a quasi-one-dimensional bosonic superfluid with attractive interactions. Specifically, we focus on the dissipative forces experienced by the soliton due to its interaction with Bogoliubov excitations. Using the collective coordinate approach and the Keldysh formalism, a Langevin equation of motion for the soliton is derived from first principles. The equation contains a stochastic Langevin force (associated with quantum noise) and a nonlocal in time dissipative force, which appears due to inelastic scattering of Bogoliubov quasiparticles off of the moving soliton. It is shown that Ohmic friction (i.e., a term proportional to the soliton's velocity) is absent in the integrable setup. However, the Markovian approximation gives rise to the Abraham-Lorentz force (i.e., a term proportional to the derivative of the soliton's acceleration), which is known from classical electrodynamics of a charged particle interacting with its own radiation. These Abraham-Lorentz equations famously contain a fundamental causality paradox, where the soliton (particle) interacts with excitations (radiation) originating from future events. We show, however, that the causality paradox is an artifact of the Markovian approximation, and our exact non-Markovian dissipative equations give rise to physical trajectories. We argue that the quantum friction discussed here should be observable in current quantum gas experiments.

  5. Markovian and Non-Markovian Modeling of Membrane Dynamics with Milestoning.

    PubMed

    Cardenas, Alfredo E; Elber, Ron

    2016-08-25

    We exploit atomically detailed simulations and the milestoning theory to extract coarse grained models of membrane kinetics and thermodynamics. Non-Markovian and Markovian theories for the phosphate group displacements are used to coarsely represent membrane motions. The construction of the two models makes it possible to examine their consistency and accuracy. The equilibrium and fluctuations of the phosphate groups along the normal to the membrane plane are estimated, and milestoning equations are constructed and solved. An optimal Markovian model is constructed that reproduces exactly the equilibrium and mean first passage time (MFPT) of the non-Markovian model. The equilibrium solution of both models is favorably compared to distributions obtained from straightforward molecular dynamics simulations. The picture for the kinetics is complex. Multiple local relaxation times of the mass density are illustrated emphasizing the non-Markovian characteristics of the process. In Markovian modeling, only a single relaxation time is assumed for a state. Mapping of particle dynamics to the dynamics of a field density offers a new way of coarse graining complex systems as membranes that may bridge between atomically detailed models and phenomenological descriptions of macroscopic membranes.

  6. Quantum regression theorem and non-Markovianity of quantum dynamics

    NASA Astrophysics Data System (ADS)

    Guarnieri, Giacomo; Smirne, Andrea; Vacchini, Bassano

    2014-08-01

    We explore the connection between two recently introduced notions of non-Markovian quantum dynamics and the validity of the so-called quantum regression theorem. While non-Markovianity of a quantum dynamics has been defined looking at the behavior in time of the statistical operator, which determines the evolution of mean values, the quantum regression theorem makes statements about the behavior of system correlation functions of order two and higher. The comparison relies on an estimate of the validity of the quantum regression hypothesis, which can be obtained exactly evaluating two-point correlation functions. To this aim we consider a qubit undergoing dephasing due to interaction with a bosonic bath, comparing the exact evaluation of the non-Markovianity measures with the violation of the quantum regression theorem for a class of spectral densities. We further study a photonic dephasing model, recently exploited for the experimental measurement of non-Markovianity. It appears that while a non-Markovian dynamics according to either definition brings with itself violation of the regression hypothesis, even Markovian dynamics can lead to a failure of the regression relation.

  7. Non-Markovian full counting statistics in quantum dot molecules

    PubMed Central

    Xue, Hai-Bin; Jiao, Hu-Jun; Liang, Jiu-Qing; Liu, Wu-Ming

    2015-01-01

    Full counting statistics of electron transport is a powerful diagnostic tool for probing the nature of quantum transport beyond what is obtainable from the average current or conductance measurement alone. In particular, the non-Markovian dynamics of quantum dot molecule plays an important role in the nonequilibrium electron tunneling processes. It is thus necessary to understand the non-Markovian full counting statistics in a quantum dot molecule. Here we study the non-Markovian full counting statistics in two typical quantum dot molecules, namely, serially coupled and side-coupled double quantum dots with high quantum coherence in a certain parameter regime. We demonstrate that the non-Markovian effect manifests itself through the quantum coherence of the quantum dot molecule system, and has a significant impact on the full counting statistics in the high quantum-coherent quantum dot molecule system, which depends on the coupling of the quantum dot molecule system with the source and drain electrodes. The results indicated that the influence of the non-Markovian effect on the full counting statistics of electron transport, which should be considered in a high quantum-coherent quantum dot molecule system, can provide a better understanding of electron transport through quantum dot molecules. PMID:25752245

  8. Non-Markovian expansion in quantum Brownian motion

    NASA Astrophysics Data System (ADS)

    Fraga, Eduardo S.; Krein, Gastão; Palhares, Letícia F.

    2014-01-01

    We consider the non-Markovian Langevin evolution of a dissipative dynamical system in quantum mechanics in the path integral formalism. After discussing the role of the frequency cutoff for the interaction of the system with the heat bath and the kernel and noise correlator that follow from the most common choices, we derive an analytic expansion for the exact non-Markovian dissipation kernel and the corresponding colored noise in the general case that is consistent with the fluctuation-dissipation theorem and incorporates systematically non-local corrections. We illustrate the modifications to results obtained using the traditional (Markovian) Langevin approach in the case of the exponential kernel and analyze the case of the non-Markovian Brownian motion. We present detailed results for the free and the quadratic cases, which can be compared to exact solutions to test the convergence of the method, and discuss potentials of a general nonlinear form.

  9. Quantum Monte Carlo method applied to non-Markovian barrier transmission

    NASA Astrophysics Data System (ADS)

    Hupin, Guillaume; Lacroix, Denis

    2010-01-01

    In nuclear fusion and fission, fluctuation and dissipation arise because of the coupling of collective degrees of freedom with internal excitations. Close to the barrier, quantum, statistical, and non-Markovian effects are expected to be important. In this work, a new approach based on quantum Monte Carlo addressing this problem is presented. The exact dynamics of a system coupled to an environment is replaced by a set of stochastic evolutions of the system density. The quantum Monte Carlo method is applied to systems with quadratic potentials. In all ranges of temperature and coupling, the stochastic method matches the exact evolution, showing that non-Markovian effects can be simulated accurately. A comparison with other theories, such as Nakajima-Zwanzig or time-convolutionless, shows that only the latter can be competitive if the expansion in terms of coupling constant is made at least to fourth order. A systematic study of the inverted parabola case is made at different temperatures and coupling constants. The asymptotic passing probability is estimated by different approaches including the Markovian limit. Large differences with an exact result are seen in the latter case or when only second order in the coupling strength is considered, as is generally assumed in nuclear transport models. In contrast, if fourth order in the coupling or quantum Monte Carlo method is used, a perfect agreement is obtained.

  10. Quantum non-Markovianity induced by Anderson localization

    PubMed Central

    Lorenzo, Salvatore; Lombardo, Federico; Ciccarello, Francesco; Palma, G. Massimo

    2017-01-01

    As discovered by P. W. Anderson, excitations do not propagate freely in a disordered lattice, but, due to destructive interference, they localise. As a consequence, when an atom interacts with a disordered lattice, one indeed observes a non-trivial excitation exchange between atom and lattice. Such non-trivial atomic dynamics will in general be characterised also by a non-trivial quantum information backflow, a clear signature of non-Markovian dynamics. To investigate the above scenario, we consider a quantum emitter, or atom, weakly coupled to a uniform coupled-cavity array (CCA). If initially excited, in the absence of disorder, the emitter undergoes a Markovian spontaneous emission by releasing all its excitation into the CCA (initially in its vacuum state). By introducing static disorder in the CCA the field normal modes become Anderson-localized, giving rise to a non-Markovian atomic dynamics. We show the existence of a functional relationship between a rigorous measure of quantum non-Markovianity and the CCA localization. We furthermore show that the average non-Markovianity of the atomic dynamics is well-described by a phenomenological model in which the atom is coupled, at the same time, to a single mode and to a standard - Markovian - dissipative bath. PMID:28205542

  11. Non-Markovian character in human mobility: Online and offline.

    PubMed

    Zhao, Zhi-Dan; Cai, Shi-Min; Lu, Yang

    2015-06-01

    The dynamics of human mobility characterizes the trajectories that humans follow during their daily activities and is the foundation of processes from epidemic spreading to traffic prediction and information recommendation. In this paper, we investigate a massive data set of human activity, including both online behavior of browsing websites and offline one of visiting towers based mobile terminations. The non-Markovian character observed from both online and offline cases is suggested by the scaling law in the distribution of dwelling time at individual and collective levels, respectively. Furthermore, we argue that the lower entropy and higher predictability in human mobility for both online and offline cases may originate from this non-Markovian character. However, the distributions of individual entropy and predictability show the different degrees of non-Markovian character between online and offline cases. To account for non-Markovian character in human mobility, we apply a protype model with three basic ingredients, namely, preferential return, inertial effect, and exploration to reproduce the dynamic process of online and offline human mobilities. The simulations show that the model has an ability to obtain characters much closer to empirical observations.

  12. Non-Markovian character in human mobility: Online and offline

    NASA Astrophysics Data System (ADS)

    Zhao, Zhi-Dan; Cai, Shi-Min; Lu, Yang

    2015-06-01

    The dynamics of human mobility characterizes the trajectories that humans follow during their daily activities and is the foundation of processes from epidemic spreading to traffic prediction and information recommendation. In this paper, we investigate a massive data set of human activity, including both online behavior of browsing websites and offline one of visiting towers based mobile terminations. The non-Markovian character observed from both online and offline cases is suggested by the scaling law in the distribution of dwelling time at individual and collective levels, respectively. Furthermore, we argue that the lower entropy and higher predictability in human mobility for both online and offline cases may originate from this non-Markovian character. However, the distributions of individual entropy and predictability show the different degrees of non-Markovian character between online and offline cases. To account for non-Markovian character in human mobility, we apply a protype model with three basic ingredients, namely, preferential return, inertial effect, and exploration to reproduce the dynamic process of online and offline human mobilities. The simulations show that the model has an ability to obtain characters much closer to empirical observations.

  13. Quantum non-Markovianity induced by Anderson localization

    NASA Astrophysics Data System (ADS)

    Lorenzo, Salvatore; Lombardo, Federico; Ciccarello, Francesco; Palma, G. Massimo

    2017-02-01

    As discovered by P. W. Anderson, excitations do not propagate freely in a disordered lattice, but, due to destructive interference, they localise. As a consequence, when an atom interacts with a disordered lattice, one indeed observes a non-trivial excitation exchange between atom and lattice. Such non-trivial atomic dynamics will in general be characterised also by a non-trivial quantum information backflow, a clear signature of non-Markovian dynamics. To investigate the above scenario, we consider a quantum emitter, or atom, weakly coupled to a uniform coupled-cavity array (CCA). If initially excited, in the absence of disorder, the emitter undergoes a Markovian spontaneous emission by releasing all its excitation into the CCA (initially in its vacuum state). By introducing static disorder in the CCA the field normal modes become Anderson-localized, giving rise to a non-Markovian atomic dynamics. We show the existence of a functional relationship between a rigorous measure of quantum non-Markovianity and the CCA localization. We furthermore show that the average non-Markovianity of the atomic dynamics is well-described by a phenomenological model in which the atom is coupled, at the same time, to a single mode and to a standard - Markovian - dissipative bath.

  14. Non-Markovian time evolution of an accelerated qubit

    NASA Astrophysics Data System (ADS)

    Moustos, Dimitris; Anastopoulos, Charis

    2017-01-01

    We present a new method for evaluating the response of a moving qubit detector interacting with a scalar field in Minkowski spacetime. We treat the detector as an open quantum system, but we do not invoke the Markov approximation. The evolution equations for the qubit density matrix are valid at all times, for all qubit trajectories, and they incorporate non-Markovian effects. We analyze in detail the case of uniform acceleration, providing a detailed characterization of all regimes where non-Markovian effects are significant. We argue that the most stable characterization of acceleration temperature refers to the late time behavior of the detector because interaction with the field vacuum brings the qubit to a thermal state at the Unruh temperature. In contrast, the early-time transition rate, that is invoked in most discussions of acceleration temperature, does not exhibit a thermal behavior when non-Markovian effects are taken into account. Finally, we note that the non-Markovian evolution derived here also applies to the mathematically equivalent problem of a static qubit interacting with a thermal field bath.

  15. Geometric quantum discord and non-Markovianity of structured reservoirs

    SciTech Connect

    Hu, Ming-Liang Lian, Han-Li

    2015-11-15

    The reservoir memory effects can lead to information backflow and recurrence of the previously lost quantum correlations. We establish connections between the direction of information flow and variation of the geometric quantum discords (GQDs) measured respectively by the trace distance, the Hellinger distance, and the Bures distance for two qubits subjecting to the bosonic structured reservoirs, and unveil their dependence on a factor whose derivative signifies the (non-)Markovianity of the dynamics. By considering the reservoirs with Lorentzian and Ohmic-like spectra, we further demonstrated that the non-Markovianity induced by the backflow of information from the reservoirs to the system enhances the GQDs in most of the parameter regions. This highlights the potential of non-Markovianity as a resource for protecting the GQDs. -- Highlights: •Dependence of GQDs on a factor determined by spectrum of the structured reservoir. •Connection between the direction of information flow and variation of the GQDs. •Non-Markovianity with the backflow of information enhances GQDs in a wide region. •The GQDs are enhanced with the information loss in a very narrow region.

  16. Measures of non-Markovianity: Divisibility versus backflow of information

    SciTech Connect

    Chruscinski, Dariusz; Kossakowski, Andrzej

    2011-05-15

    We analyze two recently proposed measures of non-Markovianity: one based on the concept of divisibility of the dynamical map and the other one based on distinguishability of quantum states. We provide a model to show that these two measures need not agree. In addition, we discuss possible generalizations and intricate relations between these measures.

  17. Quantum non-Markovianity induced by Anderson localization.

    PubMed

    Lorenzo, Salvatore; Lombardo, Federico; Ciccarello, Francesco; Palma, G Massimo

    2017-02-16

    As discovered by P. W. Anderson, excitations do not propagate freely in a disordered lattice, but, due to destructive interference, they localise. As a consequence, when an atom interacts with a disordered lattice, one indeed observes a non-trivial excitation exchange between atom and lattice. Such non-trivial atomic dynamics will in general be characterised also by a non-trivial quantum information backflow, a clear signature of non-Markovian dynamics. To investigate the above scenario, we consider a quantum emitter, or atom, weakly coupled to a uniform coupled-cavity array (CCA). If initially excited, in the absence of disorder, the emitter undergoes a Markovian spontaneous emission by releasing all its excitation into the CCA (initially in its vacuum state). By introducing static disorder in the CCA the field normal modes become Anderson-localized, giving rise to a non-Markovian atomic dynamics. We show the existence of a functional relationship between a rigorous measure of quantum non-Markovianity and the CCA localization. We furthermore show that the average non-Markovianity of the atomic dynamics is well-described by a phenomenological model in which the atom is coupled, at the same time, to a single mode and to a standard - Markovian - dissipative bath.

  18. Linear Optics Simulation of Quantum Non-Markovian Dynamics

    PubMed Central

    Chiuri, Andrea; Greganti, Chiara; Mazzola, Laura; Paternostro, Mauro; Mataloni, Paolo

    2012-01-01

    The simulation of open quantum dynamics has recently allowed the direct investigation of the features of system-environment interaction and of their consequences on the evolution of a quantum system. Such interaction threatens the quantum properties of the system, spoiling them and causing the phenomenon of decoherence. Sometimes however a coherent exchange of information takes place between system and environment, memory effects arise and the dynamics of the system becomes non-Markovian. Here we report the experimental realisation of a non-Markovian process where system and environment are coupled through a simulated transverse Ising model. By engineering the evolution in a photonic quantum simulator, we demonstrate the role played by system-environment correlations in the emergence of memory effects. PMID:23236588

  19. Linear Optics Simulation of Quantum Non-Markovian Dynamics

    NASA Astrophysics Data System (ADS)

    Chiuri, Andrea; Greganti, Chiara; Mazzola, Laura; Paternostro, Mauro; Mataloni, Paolo

    2012-12-01

    The simulation of open quantum dynamics has recently allowed the direct investigation of the features of system-environment interaction and of their consequences on the evolution of a quantum system. Such interaction threatens the quantum properties of the system, spoiling them and causing the phenomenon of decoherence. Sometimes however a coherent exchange of information takes place between system and environment, memory effects arise and the dynamics of the system becomes non-Markovian. Here we report the experimental realisation of a non-Markovian process where system and environment are coupled through a simulated transverse Ising model. By engineering the evolution in a photonic quantum simulator, we demonstrate the role played by system-environment correlations in the emergence of memory effects.

  20. Comparisons of different witnesses of non-Markovianity

    NASA Astrophysics Data System (ADS)

    Zuo, Wei; Qian, Xiao-Qing; Liang, Xian-Ting

    2017-01-01

    In this paper, the evolutions of two kinds of witnesses of the non-Markovianity and their rates of changes with time are investigated and compared. Four definitions, the trace distance, fidelity, quantum relative entropy, and quantum Fisher information are used for the first kind of witnesses which are based on the completely positive maps (CPM). Three definitions, the quantum entanglement, quantum mutual information, and quantum discord are used for the second kind of witnesses, and they are based on the local completely positive maps (LCPM). An open two-level quantum system model and a numerically quantum dissipative dynamics method, hierarchy equation of motion (HEM) are used in the investigations. It is shown that the evolutions of the witnesses and their rates of the changes calculated with different definitions clearly show the characteristics of the non-Markovianity and they are in agreement with each other.

  1. Non-Markovian State-Dependent Networks in Critical Loading

    DTIC Science & Technology

    2013-01-23

    orthant. We give an application to generalised Jackson networks with state-dependent rates. 1. REPORT DATE (DD-MM-YYYY) 4. TITLE AND SUBTITLE 13...process is a continuous-path reflected process on the nonnegative orthant. We give an application to generalised Jackson networks with state-dependent...We give an application to generalised Jackson networks with state-dependent rates. Keywords: State-dependent networks, non-Markovian networks

  2. Stochastic description of quantum Brownian dynamics

    NASA Astrophysics Data System (ADS)

    Yan, Yun-An; Shao, Jiushu

    2016-08-01

    such as the dynamical description of quantum phase transition (local- ization) and the numerical stability of the trace-conserving, nonlinear stochastic Liouville equation are outlined.

  3. Two-dimensional photon echoes reveal non-Markovian energy transfer in an excitonic dimer

    NASA Astrophysics Data System (ADS)

    Duan, Hong-Guang; Frey, Moritz; Thorwart, Michael; Nalbach, Peter

    2016-11-01

    We show that strong non-Markovian effects can be revealed by the steady-state two-dimensional (2D) photon echo spectra at asymptotic waiting times. For this, we use a simple dimer toy model that is strongly coupled to a harmonic bath with parameters typical for photoactive biomolecules. We calculate the 2D photon echo spectra employing both the numerically exact hierarchy equation of motion and the quasiadiabatic path integral approach and compare these results with approximate results from a time-nonlocal quantum master equation approach. While the latter correctly reproduces the exact population dynamics at long times, it fails at the same time to correctly describe the 2D photon echo spectra at long waiting times. The differences show that non-Markovian effects are much more important for the steady-state 2D photon echoes than for the equilibrium populations. Thus, accurate theoretical descriptions of the energy transfer dynamics in biomolecular complexes have to be based on numerically exact simulations of the environmental fluctuations when nonlinear response functions are analyzed.

  4. Generalized trace-distance measure connecting quantum and classical non-Markovianity

    NASA Astrophysics Data System (ADS)

    Wißmann, Steffen; Breuer, Heinz-Peter; Vacchini, Bassano

    2015-10-01

    We establish a direct connection of quantum Markovianity of an open system to its classical counterpart by generalizing the criterion based on the information flow. Here the flow is characterized by the time evolution of Helstrom matrices, given by the weighted difference of statistical operators, under the action of the quantum dynamical map. It turns out that the introduced criterion is equivalent to P divisibility of a quantum process, namely, divisibility in terms of positive maps, which provides a direct connection to classical Markovian stochastic processes. Moreover, it is shown that mathematical representations similar to those found for the original trace-distance-based measure hold true for the associated generalized measure for quantum non-Markovianity. That is, we prove orthogonality of optimal states showing a maximal information backflow and establish a local and universal representation of the measure. We illustrate some properties of the generalized criterion by means of examples.

  5. Non-Markovian dynamics in ultracold Rydberg aggregates

    NASA Astrophysics Data System (ADS)

    Genkin, M.; Schönleber, D. W.; Wüster, S.; Eisfeld, A.

    2016-07-01

    We propose a setup of an open quantum system in which the environment can be tuned such that either Markovian or non-Markovian system dynamics can be achieved. The implementation uses ultracold Rydberg atoms, relying on their strong long-range interactions. Our suggestion extends the features available for quantum simulators of molecular systems employing Rydberg aggregates and presents a new test bench for fundamental studies of the classification of system-environment interactions and the resulting system dynamics in open quantum systems.

  6. Non-Markovian quantum jump with generalized Lindblad master equation.

    PubMed

    Huang, X L; Sun, H Y; Yi, X X

    2008-10-01

    The Monte Carlo wave function method or the quantum-trajectory-jump approach is a powerful tool to study dissipative dynamics governed by the Markovian master equation, in particular for high-dimensional systems and when it is difficult to simulate directly. We extend this method to the non-Markovian case described by the generalized Lindblad master equation. Two examples to illustrate the method are presented and discussed. The results show that the method can correctly reproduce the dissipative dynamics for the system. The difference between this method and the traditional Markovian jump approach and the computational efficiency of this method is also discussed.

  7. Non-Markovian effects on quantum-communication protocols

    SciTech Connect

    Yeo, Ye; Oh, C. H.; An, Jun-Hong

    2010-09-15

    We show how, under the influence of non-Markovian environments, two different maximally entangled Bell states give rise to states that have equal classical correlations and the same capacities to violate the Bell-Clauser-Horne-Shimony-Holt inequality, but intriguingly differing usefulness for teleportation and dense coding. We elucidate how different entanglement measures like negativity and concurrence, and two different measures of quantum discord, could account for these behaviors. In particular, we explicitly show how the Ollivier-Zurek measure of discord directly accounts for one state being a better resource for dense coding compared to another. Our study leads to several important issues about these measures of discord.

  8. Optimal management of non-Markovian biological populations

    USGS Publications Warehouse

    Williams, B.K.

    2007-01-01

    Wildlife populations typically are described by Markovian models, with population dynamics influenced at each point in time by current but not previous population levels. Considerable work has been done on identifying optimal management strategies under the Markovian assumption. In this paper we generalize this work to non-Markovian systems, for which population responses to management are influenced by lagged as well as current status and/or controls. We use the maximum principle of optimal control theory to derive conditions for the optimal management such a system, and illustrate the effects of lags on the structure of optimal habitat strategies for a predator-prey system.

  9. Non-Markovian quantum Brownian motion of a harmonic oscillator

    SciTech Connect

    Tang, J.

    1994-02-01

    We apply the density-matrix method to the study of quantum Brownian motion of a harmonic oscillator coupled to a heat bath, a system investigated previously by Caldeira and Leggett using a different method. Unlike the earlier work, in our derivation of the master equation the non-Markovian terms are maintained. Although the same model of interaction is used, discrepancy is found between their results and our equation in the Markovian limit. We also point out that the particular interaction model used by both works cannot lead to the phenomenological generalized Langevin theory of Kubo.

  10. Affecting non-Markovian behaviour by changing bath structures

    NASA Astrophysics Data System (ADS)

    Venkataraman, V.; Plato, A. D. K.; Tufarelli, Tommaso; Kim, M. S.

    2014-01-01

    For many open quantum systems, a master equation approach employing the Markov approximation cannot reliably describe the dynamical behaviour. This is the case, for example, in a number of solid state or biological systems, and it has motivated a line of research aimed at quantifying the amount of non-Markovian behaviour (NMB) in a given model. Within this framework, we investigate the dynamics of a quantum harmonic oscillator linearly coupled to a bosonic bath. We focus on Gaussian states, which are suitably treated using a covariance matrix approach. Concentrating on an entanglement based NMB quantifier (NMBQ) proposed by Rivas et al (2010 Phys. Rev. Lett. 105 050403), we consider the role that near resonant and off-resonant modes play in affecting the NMBQ. By using a large but finite bath of oscillators for both Ohmic and super Ohmic spectral densities we find, by systematically increasing the coupling strength, initially the near resonant modes provide the most significant non-Markovian effects, while after a certain threshold of coupling strength the off-resonant modes play the dominant role. We also consider the NMBQ for two other models where we add a single strongly coupled oscillator to the model in extra bath mode and ‘buffer’ configurations, which affects the modes that determine NMB.

  11. Non-equilibrium effects upon the non-Markovian Caldeira-Leggett quantum master equation

    SciTech Connect

    Bolivar, A.O.

    2011-05-15

    Highlights: > Classical Brownian motion described by a non-Markovian Fokker-Planck equation. > Quantization process. > Quantum Brownian motion described by a non-Markovian Caldeira-Leggett equation. > A non-equilibrium quantum thermal force is predicted. - Abstract: We obtain a non-Markovian quantum master equation directly from the quantization of a non-Markovian Fokker-Planck equation describing the Brownian motion of a particle immersed in a generic environment (e.g. a non-thermal fluid). As far as the especial case of a heat bath comprising of quantum harmonic oscillators is concerned, we derive a non-Markovian Caldeira-Leggett master equation on the basis of which we work out the concept of non-equilibrium quantum thermal force exerted by the harmonic heat bath upon the Brownian motion of a free particle. The classical limit (or dequantization process) of this sort of non-equilibrium quantum effect is scrutinized, as well.

  12. Fermionic-mode entanglement in non-Markovian environment

    SciTech Connect

    Cheng, Jiong; Han, Yan; An, Qing-zhi; Zhou, Ling

    2015-03-15

    We evaluate the non-Markovian effects on the entanglement dynamics of a fermionic system interacting with two dissipative vacuum reservoirs. The exact solution of density matrix is derived by utilizing the Feynman–Vernon influence functional theory in the fermionic coherent state representation and the Grassmann calculus, which are valid for both the fermionic and bosonic baths, and their difference lies in the dependence of the parity of the initial states. The fermionic entanglement dynamics is presented by adding an additional restriction to the density matrix known as the superselection rules. Our analysis shows that the usual decoherence suppression schemes implemented in qubits systems can also be achieved for systems of identical fermions, and the initial state proves its importance in the evolution of fermionic entanglement. Our results provide a potential way to decoherence controlling of identical fermions.

  13. Inequivalence of correlation-based measures of non-Markovianity

    NASA Astrophysics Data System (ADS)

    Neto, Alaor Cervati; Karpat, Göktuǧ; Fanchini, Felipe Fernandes

    2016-09-01

    We conclusively show that the entanglement- and the mutual-information-based measures of quantum non-Markovianity are inequivalent. To this aim, we first analytically solve the optimization problem in the definition of the entanglement-based measure for a two-level system. We demonstrate that the optimal initial bipartite state of the open system and the ancillary is always given by one of the Bell states for any one-qubit dynamics. On top of this result, we present an explicit example dynamics where memory effects emerge according to the mutual-information-based measure, even though the time evolution remains memoryless with respect to the entanglement-based measure. Finally, we explain this disagreement between the two measures in terms of the information dynamics of the open system, exploring the accessible and inaccessible parts of information.

  14. Observation of non-Markovian micromechanical Brownian motion

    PubMed Central

    Gröblacher, S.; Trubarov, A.; Prigge, N.; Cole, G. D.; Aspelmeyer, M.; Eisert, J.

    2015-01-01

    All physical systems are to some extent open and interacting with their environment. This insight, basic as it may seem, gives rise to the necessity of protecting quantum systems from decoherence in quantum technologies and is at the heart of the emergence of classical properties in quantum physics. The precise decoherence mechanisms, however, are often unknown for a given system. In this work, we make use of an opto-mechanical resonator to obtain key information about spectral densities of its condensed-matter heat bath. In sharp contrast to what is commonly assumed in high-temperature quantum Brownian motion describing the dynamics of the mechanical degree of freedom, based on a statistical analysis of the emitted light, it is shown that this spectral density is highly non-Ohmic, reflected by non-Markovian dynamics, which we quantify. We conclude by elaborating on further applications of opto-mechanical systems in open system identification. PMID:26216619

  15. Nonclassical correlations in non-Markovian continuous-variable systems

    SciTech Connect

    Vasile, Ruggero; Maniscalco, Sabrina; Giorda, Paolo; Olivares, Stefano; Paris, Matteo G. A.

    2010-07-15

    We consider two identical and noninteracting harmonic oscillators coupled to either two independent bosonic baths or to a common bosonic bath. Under the only assumption, weak coupling, we analyze in detail the non-Markovian short-time-scale evolution of intensity correlations, entanglement, and quantum discord for initial two-mode squeezed-thermal vacuum states. In the independent reservoirs case, we observe the detrimental effect of the environment for all these quantities and we establish a hierarchy for their robustness against the environmental noise. In the common reservoir case, for initial uncorrelated states, we find that only quantum discord can be created via interaction with the bath, while entanglement and subshot noise intensity correlations remain absent.

  16. Entanglement oscillations in non-Markovian quantum channels

    SciTech Connect

    Maniscalco, Sabrina; Olivares, Stefano; Paris, Matteo G. A.

    2007-06-15

    We study the non-Markovian dynamics of a two-mode bosonic system interacting with two uncorrelated thermal bosonic reservoirs. We present the solution to the exact microscopic Master equation in terms of the quantum characteristic function and study in detail the dynamics of entanglement for bipartite Gaussian states. In particular, we analyze the effects of short-time system-reservoir correlations on the separability thresholds and show that the relevant parameter is the reservoir spectral density. If the frequencies of the involved modes are within the reservoir spectral density, entanglement persists for a longer time than in a Markovian channel. On the other hand, when the reservoir spectrum is out of resonance, short-time correlations lead to a faster decoherence and to the appearance of entanglement oscillations.

  17. Self-organized anomalous aggregation of particles performing nonlinear and non-Markovian random walks

    NASA Astrophysics Data System (ADS)

    Fedotov, Sergei; Korabel, Nickolay

    2015-12-01

    We present a nonlinear and non-Markovian random walks model for stochastic movement and the spatial aggregation of living organisms that have the ability to sense population density. We take into account social crowding effects for which the dispersal rate is a decreasing function of the population density and residence time. We perform stochastic simulations of random walks and discover the phenomenon of self-organized anomaly (SOA), which leads to a collapse of stationary aggregation pattern. This anomalous regime is self-organized and arises without the need for a heavy tailed waiting time distribution from the inception. Conditions have been found under which the nonlinear random walk evolves into anomalous state when all particles aggregate inside a tiny domain (anomalous aggregation). We obtain power-law stationary density-dependent survival function and define the critical condition for SOA as the divergence of mean residence time. The role of the initial conditions in different SOA scenarios is discussed. We observe phenomenon of transient anomalous bimodal aggregation.

  18. Self-organized anomalous aggregation of particles performing nonlinear and non-Markovian random walks.

    PubMed

    Fedotov, Sergei; Korabel, Nickolay

    2015-12-01

    We present a nonlinear and non-Markovian random walks model for stochastic movement and the spatial aggregation of living organisms that have the ability to sense population density. We take into account social crowding effects for which the dispersal rate is a decreasing function of the population density and residence time. We perform stochastic simulations of random walks and discover the phenomenon of self-organized anomaly (SOA), which leads to a collapse of stationary aggregation pattern. This anomalous regime is self-organized and arises without the need for a heavy tailed waiting time distribution from the inception. Conditions have been found under which the nonlinear random walk evolves into anomalous state when all particles aggregate inside a tiny domain (anomalous aggregation). We obtain power-law stationary density-dependent survival function and define the critical condition for SOA as the divergence of mean residence time. The role of the initial conditions in different SOA scenarios is discussed. We observe phenomenon of transient anomalous bimodal aggregation.

  19. Non-Markovianity Measure Based on Brukner–Zeilinger Invariant Information for Unital Quantum Dynamical Maps

    NASA Astrophysics Data System (ADS)

    He, Zhi; Zhu, Lie-Qiang; Li, Li

    2017-03-01

    A non-Markovianity measure based on Brukner–Zeilinger invariant information to characterize non-Markovian effect of open systems undergoing unital dynamical maps is proposed. The method takes advantage of non-increasing property of the Brukner–Zeilinger invariant information under completely positive and trace-preserving unital maps. The simplicity of computing the Brukner–Zeilinger invariant information is the advantage of the proposed measure because of mainly depending on the purity of quantum state. The measure effectively captures the characteristics of non-Markovianity of unital dynamical maps. As some concrete application, we consider two typical non-Markovian noise channels, i.e., the phase damping channel and the random unitary channel to show the sensitivity of the proposed measure. By investigation, we find that the conditions of detecting the non-Markovianity for the phase damping channel are consistent with the results of existing measures for non-Markovianity, i.e., information flow, divisibility and quantum mutual information. However, for the random unitary channel non-Markovian conditions are same to that of the information flow, but is different from that of the divisibility and quantum mutual information. Supported by the National Natural Science Foundation of China under Grant No. 61505053, the Natural Science Foundation of Hunan Province under Grant No. 2015JJ3092, the Research Foundation of Education Bureau of Hunan Province, China under Grant No. 16B177, the School Foundation from the Hunan University of Arts and Science under Grant No. 14ZD01

  20. Preservation Macroscopic Entanglement of Optomechanical Systems in non-Markovian Environment

    PubMed Central

    Cheng, Jiong; Zhang, Wen-Zhao; Zhou, Ling; Zhang, Weiping

    2016-01-01

    We investigate dynamics of an optomechanical system under the non-Markovian environment. In the weak optomechanical single-photon coupling regime, we provide an analytical approach fully taking into account the non-Markovian memory effects. When the cavity-bath coupling strength crosses a certain threshold, an oscillating memory state for the classical cavity field is formed. Due to the existence of the non-decay optical bound state, a nonequilibrium optomechanical thermal entanglement is preserved even without external driving laser. Our results provide a potential usage to generate and protect entanglement via non-Markovian environment. PMID:27032674

  1. Non-Markovianity and reservoir memory of quantum channels: a quantum information theory perspective

    PubMed Central

    Bylicka, B.; Chruściński, D.; Maniscalco, S.

    2014-01-01

    Quantum technologies rely on the ability to coherently transfer information encoded in quantum states along quantum channels. Decoherence induced by the environment sets limits on the efficiency of any quantum-enhanced protocol. Generally, the longer a quantum channel is the worse its capacity is. We show that for non-Markovian quantum channels this is not always true: surprisingly the capacity of a longer channel can be greater than of a shorter one. We introduce a general theoretical framework linking non-Markovianity to the capacities of quantum channels and demonstrate how harnessing non-Markovianity may improve the efficiency of quantum information processing and communication. PMID:25043763

  2. Non-Markovianity and reservoir memory of quantum channels: a quantum information theory perspective.

    PubMed

    Bylicka, B; Chruściński, D; Maniscalco, S

    2014-07-21

    Quantum technologies rely on the ability to coherently transfer information encoded in quantum states along quantum channels. Decoherence induced by the environment sets limits on the efficiency of any quantum-enhanced protocol. Generally, the longer a quantum channel is the worse its capacity is. We show that for non-Markovian quantum channels this is not always true: surprisingly the capacity of a longer channel can be greater than of a shorter one. We introduce a general theoretical framework linking non-Markovianity to the capacities of quantum channels and demonstrate how harnessing non-Markovianity may improve the efficiency of quantum information processing and communication.

  3. Dissipative particle dynamics incorporating non-Markovian effect

    NASA Astrophysics Data System (ADS)

    Kinefuchi, Ikuya; Yoshimoto, Yuta; Takagi, Shu

    2015-11-01

    The coarse-graining methodology of molecular simulations is of great importance to analyze large-scale, complex hydrodynamic phenomena. In the present study, we derive the equation of motion for non-Markovian dissipative particle dynamics (NMDPD) by introducing the history effects on the time evolution of the system. Our formulation is based on the generalized Langevin equation, which describes the motions of the centers of mass of clusters comprising microscopic particles. The mean, friction, and fluctuating forces in the NMDPD model are directly constructed from an underlying MD system without any scaling procedure. For the validation of our formulation, we construct NMDPD models from high-density Lennard-Jones systems, in which the typical time scales of the coarse-grained particle motions and the fluctuating forces are not fully separable. The NMDPD models reproduce the temperatures, diffusion coefficients, and viscosities of the corresponding MD systems more accurately than the conventional DPD models based on a Markovian approximation. Our results suggest that the NMDPD method is a promising alternative for simulating mesoscale flows where a Markovian approximation is not valid.

  4. Entanglement and non-Markovianity of a multi-level atom decaying in a cavity

    NASA Astrophysics Data System (ADS)

    Zi-Long, Fan; Yu-Kun, Ren; Hao-Sheng, Zeng

    2016-01-01

    We present a paradigmatic method for exactly studying non-Markovian dynamics of a multi-level V-type atom interacting with a zero-temperature bosonic bath. Special attention is paid to the entanglement evolution and the dynamical non-Markovianity of a three-level V-type atom. We find that the entanglement negativity decays faster and non-Markovianity is smaller in the resonance regions than those in the non-resonance regions. More importantly, the quantum interference between the dynamical non-Markovianities induced by different transition channels is manifested, and the frequency domains for constructive and destructive interferences are found. Project supported by the National Natural Science Foundation of China (Grant Nos. 11275064 and 11075050), the Specialized Research Fund for the Doctoral Program of Higher Education, China (Grant No. 20124306110003), and the Construct Program of the National Key Discipline, China.

  5. Connecting two jumplike unravelings for non-Markovian open quantum systems

    SciTech Connect

    Luoma, Kimmo; Suominen, Kalle-Antti; Piilo, Jyrki

    2011-09-15

    The development and use of Monte Carlo algorithms plays a visible role in the study of non-Markovian quantum dynamics due to the provided insight and powerful numerical methods for solving the system dynamics. In the Markovian case, the connections between the various types of methods are fairly well understood while, for the non-Markovian case, there has so far been only a few studies. We focus here on two jumplike unravelings of non-Markovian dynamics: the non-Markovian quantum jump (NMQJ) method and the property state method by Gambetta, Askerud, and Wiseman (GAW). The results for simple quantum optical systems illustrate the connections between the realizations of the two methods and also highlight how the probability currents between the system and environment, or between the property states of the total system, are associated with the decay rates of time-local master equations and, consequently, with the jump rates of the NMQJ method.

  6. Continuous-variable quantum key distribution in non-Markovian channels

    SciTech Connect

    Vasile, Ruggero; Olivares, Stefano; Paris, MatteoG. A.; Maniscalco, Sabrina

    2011-04-15

    We address continuous-variable quantum key distribution (QKD) in non-Markovian lossy channels and show how the non-Markovian features may be exploited to enhance security and/or to detect the presence and the position of an eavesdropper along the transmission line. In particular, we suggest a coherent-state QKD protocol which is secure against Gaussian individual attacks based on optimal 1{yields}2 asymmetric cloning machines for arbitrarily low values of the overall transmission line. The scheme relies on specific non-Markovian properties, and cannot be implemented in ordinary Markovian channels characterized by uniform losses. Our results give a clear indication of the potential impact of non-Markovian effects in QKD.

  7. Continuous Time Open Quantum Random Walks and Non-Markovian Lindblad Master Equations

    NASA Astrophysics Data System (ADS)

    Pellegrini, Clément

    2014-02-01

    A new type of quantum random walks, called Open Quantum Random Walks, has been developed and studied in Attal et al. (Open quantum random walks, preprint) and (Central limit theorems for open quantum random walks, preprint). In this article we present a natural continuous time extension of these Open Quantum Random Walks. This continuous time version is obtained by taking a continuous time limit of the discrete time Open Quantum Random Walks. This approximation procedure is based on some adaptation of Repeated Quantum Interactions Theory (Attal and Pautrat in Annales Henri Poincaré Physique Théorique 7:59-104, 2006) coupled with the use of correlated projectors (Breuer in Phys Rev A 75:022103, 2007). The limit evolutions obtained this way give rise to a particular type of quantum master equations. These equations appeared originally in the non-Markovian generalization of the Lindblad theory (Breuer in Phys Rev A 75:022103, 2007). We also investigate the continuous time limits of the quantum trajectories associated with Open Quantum Random Walks. We show that the limit evolutions in this context are described by jump stochastic differential equations. Finally we present a physical example which can be described in terms of Open Quantum Random Walks and their associated continuous time limits.

  8. Entanglement dynamics in a non-Markovian environment: An exactly solvable model

    NASA Astrophysics Data System (ADS)

    Wilson, Justin H.; Fregoso, Benjamin M.; Galitski, Victor M.

    2012-05-01

    We study the non-Markovian effects on the dynamics of entanglement in an exactly solvable model that involves two independent oscillators, each coupled to its own stochastic noise source. First, we develop Lie algebraic and functional integral methods to find an exact solution to the single-oscillator problem which includes an analytic expression for the density matrix and the complete statistics, i.e., the probability distribution functions for observables. For long bath time correlations, we see nonmonotonic evolution of the uncertainties in observables. Further, we extend this exact solution to the two-particle problem and find the dynamics of entanglement in a subspace. We find the phenomena of “sudden death” and “rebirth” of entanglement. Interestingly, all memory effects enter via the functional form of the energy and hence the time of death and rebirth is controlled by the amount of noisy energy added into each oscillator. If this energy increases above (decreases below) a threshold, we obtain sudden death (rebirth) of entanglement.

  9. Quantum Darwinism and non-Markovian dissipative dynamics from quantum phases of the spin-1/2 X X model

    NASA Astrophysics Data System (ADS)

    Giorgi, Gian Luca; Galve, Fernando; Zambrini, Roberta

    2015-08-01

    Quantum Darwinism explains the emergence of a classical description of objects in terms of the creation of many redundant registers in an environment containing their classical information. This amplification phenomenon, where only classical information reaches the macroscopic observer and through which different observers can agree on the objective existence of such object, has been revived lately for several types of situations, successfully explaining classicality. We explore quantum Darwinism in the setting of an environment made of two level systems which are initially prepared in the ground state of the XX model, which exhibits different phases; we find that the different phases have different abilities to redundantly acquire classical information about the system, the "ferromagnetic phase" being the only one able to complete quantum Darwinism. At the same time we relate this ability to how non-Markovian the system dynamics is, based on the interpretation that non-Markovian dynamics is associated with backflow of information from environment to system, thus spoiling the information transfer needed for Darwinism. Finally, we explore mixing of bath registers by allowing a small interaction among them, finding that this spoils the stored information as previously found in the literature.

  10. Non-Markovian Dynamics for a Two-Atom-Coupled System Interacting with Local Reservoir at Finite Temperature

    NASA Astrophysics Data System (ADS)

    Jiang, Li; Zhang, Guo-Feng

    2017-03-01

    By using the effective non-Markovian measure (Breuer et al., Phys. Rev. Lett. 103, 210401 2009) we investigate non-Markovian dynamics of a pair of two-level atoms (TLAs) system, each of which interacting with a local reservoir. We show that subsystem dynamics can be controlled by manipulating the coupling between TLAs, temperature and relaxation rate of the atoms. Moreover, the correlation between non-Markovianity of subsystem and entanglement between the subsystem and the structured bath is investigated, the results show that the emergence of non-Markovianity has a negative effect on the entanglement.

  11. Exact non-Markovian master equations for multiple qubit systems: Quantum-trajectory approach

    NASA Astrophysics Data System (ADS)

    Chen, Yusui; You, J. Q.; Yu, Ting

    2014-11-01

    A wide class of exact master equations for a multiple qubit system can be explicitly constructed by using the corresponding exact non-Markovian quantum-state diffusion equations. These exact master equations arise naturally from the quantum decoherence dynamics of qubit system as a quantum memory coupled to a collective colored noisy source. The exact master equations are also important in optimal quantum control, quantum dissipation, and quantum thermodynamics. In this paper, we show that the exact non-Markovian master equation for a dissipative N -qubit system can be derived explicitly from the statistical average of the corresponding non-Markovian quantum trajectories. We illustrated our general formulation by an explicit construction of a three-qubit system coupled to a non-Markovian bosonic environment. This multiple qubit master equation offers an accurate time evolution of quantum systems in various domains, and paves the way to investigate the memory effect of an open system in a non-Markovian regime without any approximation.

  12. Quantum speed limits in open systems: Non-Markovian dynamics without rotating-wave approximation

    PubMed Central

    Sun, Zhe; Liu, Jing; Ma, Jian; Wang, Xiaoguang

    2015-01-01

    We derive an easily computable quantum speed limit (QSL) time bound for open systems whose initial states can be chosen as either pure or mixed states. Moreover, this QSL time is applicable to either Markovian or non-Markovian dynamics. By using of a hierarchy equation method, we numerically study the QSL time bound in a qubit system interacting with a single broadened cavity mode without rotating-wave, Born and Markovian approximation. By comparing with rotating-wave approximation (RWA) results, we show that the counter-rotating terms are helpful to increase evolution speed. The problem of non-Markovianity is also considered. We find that for non-RWA cases, increasing system-bath coupling can not always enhance the non-Markovianity, which is qualitatively different from the results with RWA. When considering the relation between QSL and non-Markovianity, we find that for small broadening widths of the cavity mode, non-Markovianity can increase the evolution speed in either RWA or non-RWA cases, while, for larger broadening widths, it is not true for non-RWA cases. PMID:25676589

  13. Non-Markovian reduced propagator, multiple-time correlation functions, and master equations with general initial conditions in the weak-coupling limit

    SciTech Connect

    Vega, Ines de; Alonso, Daniel

    2006-02-15

    In this paper we derive the evolution equation for the reduced propagator, an object that evolves vectors of the Hilbert space of a system S interacting with an environment B in a non-Markovian way. This evolution is conditioned to certain initial and final states of the environment. Once an average over these environmental states is made, reduced propagators permit the evaluation of multiple-time correlation functions of system observables. When this average is done stochastically the reduced propagator evolves according to a stochastic Schroedinger equation. In addition, it is possible to obtain the evolution equations of the multiple-time correlation functions which generalize the well-known quantum regression theorem to the non-Markovian case. Here, both methods, stochastic and evolution equations, are described by assuming a weak coupling between system and environment. Finally, we show that reduced propagators can be used to obtain a master equation with general initial conditions, and not necessarily an initial vacuum state for the environment. We illustrate the theory with several examples.

  14. Exact Analytic Solution of the Non-Markovian Chemical Reaction Process Via Time-Subordination

    NASA Astrophysics Data System (ADS)

    Benson, D. A.

    2015-12-01

    Perfectly-mixed reactions are Markovian, because the advance of the state depends only on the current state. Poor mixing (or the partner process of upscaling over heterogeneous concentrations) renders the process non-Markovian because of memory of the chemical structure. In other words, a particle takes some time to reach a suitable reaction site. The time depends on structure, and the structure changes over time. For purely diffusive transport, a calculation of the random time to reach the edges of ``islands'' allows a solution of the non-Markovian reaction rates that evolve (decrease) over time. This randomization of the active (operational) reaction time leads to non-Markovian reactions and an integro-differential governing equation of chemical evolution. Implications for more complex (advection/diffusion) environments are discussed.

  15. Decoherence suppression of open quantum systems through a strong coupling to non-Markovian reservoirs

    SciTech Connect

    Lei, Chan U; Zhang Weimin

    2011-11-15

    In this paper, we provide a mechanism of decoherence suppression for open quantum systems in general and that for a ''Schroedinger cat-like'' state in particular, through strong couplings to non-Markovian reservoirs. Different from the usual strategies in the literature of suppressing decoherence by decoupling the system from the environment, here the decoherence suppression employs a strong back-reaction from non-Markovian reservoirs. The mechanism relies on the existence of the singularities (bound states) of the nonequilibrium retarded Green function, which completely determines the dissipation and decoherence dynamics of open systems. As an application, we examine the decoherence dynamics of a photonic crystal nanocavity that is coupled to a waveguide. The strong non-Markovian suppression of decoherence for the ''optical cat'' state is attained.

  16. Robust fermionic-mode entanglement of a nanoelectronic system in non-Markovian environments

    NASA Astrophysics Data System (ADS)

    Cheng, Jiong; Zhang, Wen-Zhao; Han, Yan; Zhou, Ling

    2015-02-01

    A maximal steady-state fermionic entanglement of a nanoelectronic system is generated in finite temperature non-Markovian environments. The fermionic entanglement dynamics is presented by connecting the exact solution of the system with an appropriate definition of fermionic entanglement. We prove that the two understandings of the dissipationless non-Markovian dynamics, namely, the bound state and the modified Laplace transformation, are completely equivalent. For comparison, the steady-state entanglement is also studied in the wide-band limit and Born-Markovian approximation. When the environments have a finite band structure, we find that the system presents various kinds of relaxation processes. The final states can be thermal or thermal-like states, quantum memory states, and oscillating quantum memory states. Our study provides an analytical way to explore the non-Markovian entanglement dynamics of identical fermions in a realistic setting, i.e., finite-temperature reservoirs with a cutoff spectrum.

  17. Equivalence of the measures of non-Markovianity for open two-level systems

    SciTech Connect

    Zeng Haosheng; Tang Ning; Zheng Yanping; Wang Guoyou

    2011-09-15

    Different measures have been presented to depict the deviation of quantum time evolution in open systems from Markovian processes. We demonstrate that the measure proposed by Breuer, Laine, and Piilo [Phys. Rev. Lett. 103, 210401 (2009)] and the two measures proposed by Rivas, Huelga, and Plenio [Phys. Rev. Lett. 105, 050403 (2010)] have exactly the same non-Markovian time-evolution intervals and thus are really equivalent to each other when they are applied to open two-level systems coupled to environments via the Jaynes-Cummings or dephasing models. This equivalence implies that the three measures, in different ways, capture the intrinsic character of the non-Markovianity of quantum evolutional processes. We also show that the maximization in the definition of the first measure can be actually removed for the considered models without influencing the sensibility of the measure to detect non-Markovianity.

  18. Quantum non-Markovian reservoirs of atomic condensates engineered via dipolar interactions

    NASA Astrophysics Data System (ADS)

    Yuan, Ji-Bing; Xing, Hai-Jun; Kuang, Le-Man; Yi, Su

    2017-03-01

    We investigate the quantum dephasing dynamics of an impurity qubit immersed in a quasi-two-dimensional dipolar Bose-Einstein condensate whose collective excitations act as a reservoir for the qubit. We show that the properties of the environment are highly engineerable through the relative strength of the dipolar and contact interactions such that qubit's dephasing dynamics could be Markovian, weak non-Markovian, or even highly non-Markovian. It is also revealed that the appearance of the roton excitation is responsible for the highly non-Markovian dephasing dynamics. Since rotonlike dispersions also appear in condensates placed in cavities or with spin-orbit couplings, our results pave the way for searching for systems that are suitable environment engineering.

  19. Equivalence between Non-Markovian and Markovian Dynamics in Epidemic Spreading Processes

    NASA Astrophysics Data System (ADS)

    Starnini, Michele; Gleeson, James P.; Boguñá, Marián

    2017-03-01

    A general formalism is introduced to allow the steady state of non-Markovian processes on networks to be reduced to equivalent Markovian processes on the same substrates. The example of an epidemic spreading process is considered in detail, where all the non-Markovian aspects are shown to be captured within a single parameter, the effective infection rate. Remarkably, this result is independent of the topology of the underlying network, as demonstrated by numerical simulations on two-dimensional lattices and various types of random networks. Furthermore, an analytic approximation for the effective infection rate is introduced, which enables the calculation of the critical point and of the critical exponents for the non-Markovian dynamics.

  20. Non-Markovian dynamics of quantum systems. I. Formalism and transport coefficients.

    PubMed

    Kanokov, Z; Palchikov, Yu V; Adamian, G G; Antonenko, N V; Scheid, W

    2005-01-01

    Generalized Langevin equations and fluctuation-dissipation relations are derived for the case of a nonlinear non-Markovian noise. The explicit expressions for the time-dependent friction and diffusion coefficients are presented for the case of general and linear couplings in the coordinate and momentum between the collective harmonic oscillator and heat bath. The long-time tails of correlation functions are investigated in the low- and high-temperature regimes of dissipation for different couplings. The Onsager's regression hypothesis is discussed for the non-Markovian dynamics. The Lindblad theory is justified on the basis of the microscopical model.

  1. Non-Markovian far-infrared spectra of HCl and DCl in liquid SF6

    NASA Astrophysics Data System (ADS)

    Hernández, A. Calvo; Velasco, S.; Mauricio, F.

    1986-01-01

    The far-infrared spectrum of dilute solutions of HCl and DCl in liquid SF6 have been calculated by applying of two non-Markovian spectral theories previously reported in a recent work [A. Calvo Hernández, S. Velasco, and F. Mauricio, Phys. Rev. A 31, 3419 (1985)]. The calculated spectra are compared with the experimental spectra. Even though the systems under study are relatively far from the Markovian limit, the agreement between theoretical and experimental spectra shows the wide range of validity of both non-Markovian spectral theories.

  2. Long-lived quantum coherence and non-Markovianity of photosynthetic complexes

    NASA Astrophysics Data System (ADS)

    Chen, Hong-Bin; Lien, Jiun-Yi; Hwang, Chi-Chuan; Chen, Yueh-Nan

    2014-04-01

    Long-lived quantum coherence in photosynthetic pigment-protein complexes has recently been reported at physiological temperature. It has been pointed out that the discrete vibrational modes may be responsible for the long-lived coherence. Here, we propose an analytical non-Markovian model to explain the origin of the long-lived coherence in pigment-protein complexes. We show that the memory effect of the discrete vibrational modes produces a long oscillating tail in the coherence. We further use the recently proposed measure to quantify the non-Markovianity of the system and find out the prolonged coherence is highly correlated to it.

  3. Application of a time-convolutionless stochastic Schrödinger equation to energy transport and thermal relaxation.

    PubMed

    Biele, R; Timm, C; D'Agosta, R

    2014-10-01

    Quantum stochastic methods based on effective wave functions form a framework for investigating the generally non-Markovian dynamics of a quantum-mechanical system coupled to a bath. They promise to be computationally superior to the master-equation approach, which is numerically expensive for large dimensions of the Hilbert space. Here, we numerically investigate the suitability of a known stochastic Schrödinger equation that is local in time to give a description of thermal relaxation and energy transport. This stochastic Schrödinger equation can be solved with a moderate numerical cost, indeed comparable to that of a Markovian system, and reproduces the dynamics of a system evolving according to a general non-Markovian master equation. After verifying that it describes thermal relaxation correctly, we apply it for the first time to the energy transport in a spin chain. We also discuss a portable algorithm for the generation of the coloured noise associated with the numerical solution of the non-Markovian dynamics.

  4. Fisher information due to a phase noisy laser under non-Markovian environment

    SciTech Connect

    Abdel-Khalek, S.

    2014-12-15

    More recently, K. Berrada [Annals of Physics 340 (2014) 60-69] [1] studied the geometric phase of a two-level atom system driven by a phase noise laser under non-Markovian dynamics in terms of different parameters involved in the whole system, and collapse and revival phenomena were found for large class of states. In this paper, using this noise effect, we study the quantum fisher information (QFI) for a two-level atom system driven by a phase noise laser under non-Markovian dynamics. A new quantity, called QFI flow is used to characterize the damping effect and unveil a fundamental connection between non-Markovian behavior and dynamics of system–environment correlations under phase noise laser. It is shown that QFI flow has disappeared suddenly followed by a sudden birth depending on the kind of the environment damping. QFI flow provides an indicator to characterize the dissipative quantum system’s decoherence by analyzing the behavior of the dynamical non-Markovian coefficients.

  5. Non-Markovian dynamics of an open quantum system with nonstationary coupling

    SciTech Connect

    Kalandarov, S. A.; Adamian, G. G.; Kanokov, Z.; Antonenko, N. V.; Scheid, W.

    2011-04-15

    The spectral, dissipative, and statistical properties of the damped quantum oscillator are studied in the case of non-Markovian and nonstationary system-heat bath coupling. The dissipation of collective energy is shown to be slowed down, and the decoherence rate and entropy grow with modulation frequency.

  6. Dynamics of non-Markovian open quantum systems

    NASA Astrophysics Data System (ADS)

    de Vega, Inés; Alonso, Daniel

    2017-01-01

    Open quantum systems (OQSs) cannot always be described with the Markov approximation, which requires a large separation of system and environment time scales. An overview is given of some of the most important techniques available to tackle the dynamics of an OQS beyond the Markov approximation. Some of these techniques, such as master equations, Heisenberg equations, and stochastic methods, are based on solving the reduced OQS dynamics, while others, such as path integral Monte Carlo or chain mapping approaches, are based on solving the dynamics of the full system. The physical interpretation and derivation of the various approaches are emphasized, how they are connected is explored, and how different methods may be suitable for solving different problems is examined.

  7. Non-Markovian spin-resolved counting statistics and an anomalous relation between autocorrelations and cross correlations in a three-terminal quantum dot

    NASA Astrophysics Data System (ADS)

    Luo, JunYan; Yan, Yiying; Huang, Yixiao; Yu, Li; He, Xiao-Ling; Jiao, HuJun

    2017-01-01

    We investigate the noise correlations of spin and charge currents through an electron spin resonance (ESR)-pumped quantum dot, which is tunnel coupled to three electrodes maintained at an equivalent chemical potential. A recursive scheme is employed with inclusion of the spin degrees of freedom to account for the spin-resolved counting statistics in the presence of non-Markovian effects due to coupling with a dissipative heat bath. For symmetric spin-up and spin-down tunneling rates, an ESR-induced spin flip mechanism generates a pure spin current without an accompanying net charge current. The stochastic tunneling of spin carriers, however, produces universal shot noises of both charge and spin currents, revealing the effective charge and spin units of quasiparticles in transport. In the case of very asymmetric tunneling rates for opposite spins, an anomalous relationship between noise autocorrelations and cross correlations is revealed, where super-Poissonian autocorrelation is observed in spite of a negative cross correlation. Remarkably, with strong dissipation strength, non-Markovian memory effects give rise to a positive cross correlation of the charge current in the absence of a super-Poissonian autocorrelation. These unique noise features may offer essential methods for exploiting internal spin dynamics and various quasiparticle tunneling processes in mesoscopic transport.

  8. Fast Quantum Algorithm for Predicting Descriptive Statistics of Stochastic Processes

    NASA Technical Reports Server (NTRS)

    Williams Colin P.

    1999-01-01

    Stochastic processes are used as a modeling tool in several sub-fields of physics, biology, and finance. Analytic understanding of the long term behavior of such processes is only tractable for very simple types of stochastic processes such as Markovian processes. However, in real world applications more complex stochastic processes often arise. In physics, the complicating factor might be nonlinearities; in biology it might be memory effects; and in finance is might be the non-random intentional behavior of participants in a market. In the absence of analytic insight, one is forced to understand these more complex stochastic processes via numerical simulation techniques. In this paper we present a quantum algorithm for performing such simulations. In particular, we show how a quantum algorithm can predict arbitrary descriptive statistics (moments) of N-step stochastic processes in just O(square root of N) time. That is, the quantum complexity is the square root of the classical complexity for performing such simulations. This is a significant speedup in comparison to the current state of the art.

  9. Data-driven non-Markovian closure models

    NASA Astrophysics Data System (ADS)

    Kondrashov, Dmitri; Chekroun, Mickaël D.; Ghil, Michael

    2015-03-01

    This paper has two interrelated foci: (i) obtaining stable and efficient data-driven closure models by using a multivariate time series of partial observations from a large-dimensional system; and (ii) comparing these closure models with the optimal closures predicted by the Mori-Zwanzig (MZ) formalism of statistical physics. Multilayer stochastic models (MSMs) are introduced as both a generalization and a time-continuous limit of existing multilevel, regression-based approaches to closure in a data-driven setting; these approaches include empirical model reduction (EMR), as well as more recent multi-layer modeling. It is shown that the multilayer structure of MSMs can provide a natural Markov approximation to the generalized Langevin equation (GLE) of the MZ formalism. A simple correlation-based stopping criterion for an EMR-MSM model is derived to assess how well it approximates the GLE solution. Sufficient conditions are derived on the structure of the nonlinear cross-interactions between the constitutive layers of a given MSM to guarantee the existence of a global random attractor. This existence ensures that no blow-up can occur for a broad class of MSM applications, a class that includes non-polynomial predictors and nonlinearities that do not necessarily preserve quadratic energy invariants. The EMR-MSM methodology is first applied to a conceptual, nonlinear, stochastic climate model of coupled slow and fast variables, in which only slow variables are observed. It is shown that the resulting closure model with energy-conserving nonlinearities efficiently captures the main statistical features of the slow variables, even when there is no formal scale separation and the fast variables are quite energetic. Second, an MSM is shown to successfully reproduce the statistics of a partially observed, generalized Lotka-Volterra model of population dynamics in its chaotic regime. The challenges here include the rarity of strange attractors in the model's parameter

  10. Non-Markovian Complexity in the Quantum-to-Classical Transition.

    PubMed

    Xiong, Heng-Na; Lo, Ping-Yuan; Zhang, Wei-Min; Feng, Da Hsuan; Nori, Franco

    2015-08-25

    The quantum-to-classical transition is due to environment-induced decoherence, and it depicts how classical dynamics emerges from quantum systems. Previously, the quantum-to-classical transition has mainly been described with memory-less (Markovian) quantum processes. Here we study the complexity of the quantum-to-classical transition through general non-Markovian memory processes. That is, the influence of various reservoirs results in a given initial quantum state evolving into one of the following four scenarios: thermal state, thermal-like state, quantum steady state, or oscillating quantum nonstationary state. In the latter two scenarios, the system maintains partial or full quantum coherence due to the strong non-Markovian memory effect, so that in these cases, the quantum-to-classical transition never occurs. This unexpected new feature provides a new avenue for the development of future quantum technologies because the remaining quantum oscillations in steady states are decoherence-free.

  11. Non-Markovian Complexity in the Quantum-to-Classical Transition

    PubMed Central

    Xiong, Heng-Na; Lo, Ping-Yuan; Zhang, Wei-Min; Feng, Da Hsuan; Nori, Franco

    2015-01-01

    The quantum-to-classical transition is due to environment-induced decoherence, and it depicts how classical dynamics emerges from quantum systems. Previously, the quantum-to-classical transition has mainly been described with memory-less (Markovian) quantum processes. Here we study the complexity of the quantum-to-classical transition through general non-Markovian memory processes. That is, the influence of various reservoirs results in a given initial quantum state evolving into one of the following four scenarios: thermal state, thermal-like state, quantum steady state, or oscillating quantum nonstationary state. In the latter two scenarios, the system maintains partial or full quantum coherence due to the strong non-Markovian memory effect, so that in these cases, the quantum-to-classical transition never occurs. This unexpected new feature provides a new avenue for the development of future quantum technologies because the remaining quantum oscillations in steady states are decoherence-free. PMID:26303002

  12. Transient unidirectional energy flow and diode-like phenomenon induced by non-Markovian environments

    PubMed Central

    Jing, Jun; Segal, Dvira; Li, Baowen; Wu, Lian-Ao

    2015-01-01

    Relying on an exact time evolution scheme, we identify a novel transient energy transfer phenomenon in an exactly-solvable quantum microscopic model consisting of a three-level system coupled to two non-Markovian zero-temperature bosonic baths through two separable quantum channels. The dynamics of this model can be solved exactly using the quantum-state-diffusion equation formalism, demonstrating finite intervals of unidirectional energy flow across the system, typically, from the non-Markovian environment towards the more Markovian bath. Furthermore, when introducing a spatial asymmetry into the system, an analogue of the rectification effect is realized. In the long time limit, the dynamics arrives at a stationary state and the effects recede. Understanding temporal characteristics of directional energy flow will aid in designing microscopic energy transfer devices. PMID:26478230

  13. Solving non-Markovian open quantum systems with multi-channel reservoir coupling

    NASA Astrophysics Data System (ADS)

    Broadbent, Curtis J.; Jing, Jun; Yu, Ting; Eberly, Joseph H.

    2012-08-01

    We extend the non-Markovian quantum state diffusion (QSD) equation to open quantum systems which exhibit multi-channel coupling to a harmonic oscillator reservoir. Open quantum systems which have multi-channel reservoir coupling are those in which canonical transformation of reservoir modes cannot reduce the number of reservoir operators appearing in the interaction Hamiltonian to one. We show that the non-Markovian QSD equation for multi-channel reservoir coupling can, in some cases, lead to an exact master equation which we derive. We then derive the exact master equation for the three-level system in a vee-type configuration which has multi-channel reservoir coupling and give the analytical solution. Finally, we examine the evolution of the three-level vee-type system with generalized Ornstein-Uhlenbeck reservoir correlations numerically.

  14. Dynamical invariants in a non-Markovian quantum-state-diffusion equation

    NASA Astrophysics Data System (ADS)

    Luo, Da-Wei; Pyshkin, P. V.; Lam, Chi-Hang; Yu, Ting; Lin, Hai-Qing; You, J. Q.; Wu, Lian-Ao

    2015-12-01

    We find dynamical invariants for open quantum systems described by the non-Markovian quantum-state-diffusion (QSD) equation. In stark contrast to closed systems where the dynamical invariant can be identical to the system density operator, these dynamical invariants no longer share the equation of motion for the density operator. Moreover, the invariants obtained with a biorthonormal basis can be used to render an exact solution to the QSD equation and the corresponding non-Markovian dynamics without using master equations or numerical simulations. Significantly we show that we can apply these dynamical invariants to reverse engineering a Hamiltonian that is capable of driving the system to the target state, providing a different way to design control strategy for open quantum systems.

  15. Quantifying non-Markovianity of continuous-variable Gaussian dynamical maps

    SciTech Connect

    Vasile, Ruggero; Maniscalco, Sabrina; Paris, Matteo G. A.; Breuer, Heinz-Peter; Piilo, Jyrki

    2011-11-15

    We introduce a non-Markovianity measure for continuous-variable open quantum systems based on the idea put forward in H.-P. Breuer et al.[Phys. Rev. Lett. 103, 210401 (2009);], that is, by quantifying the flow of information from the environment back to the open system. Instead of the trace distance we use here the fidelity to assess distinguishability of quantum states. We employ our measure to evaluate non-Markovianity of two paradigmatic Gaussian channels: the purely damping channel and the quantum Brownian motion channel with Ohmic environment. We consider different classes of Gaussian states and look for pairs of states maximizing the backflow of information. For coherent states we find simple analytical solutions, whereas for squeezed states we provide both exact numerical and approximate analytical solutions in the weak coupling limit.

  16. Shot-noise at a Fermi-edge singularity: Non-Markovian dynamics

    SciTech Connect

    Ubbelohde, N.; Maire, N.; Haug, R. J.; Roszak, K.; Hohls, F.; Novotný, T.

    2013-12-04

    For an InAs quantum dot we study the current shot noise at a Fermi-edge singularity in low temperature cross-correlation measurements. In the regime of the interaction effect the strong suppression of noise observed at zero magnetic field and the sequence of enhancement and suppression in magnetic field go beyond a Markovian master equation model. Qualitative and quantitative agreement can however be achieved by a generalized master equation model taking non-Markovian dynamics into account.

  17. Causality-driven slow-down and speed-up of diffusion in non-Markovian temporal networks.

    PubMed

    Scholtes, Ingo; Wider, Nicolas; Pfitzner, René; Garas, Antonios; Tessone, Claudio J; Schweitzer, Frank

    2014-09-24

    Recent research has highlighted limitations of studying complex systems with time-varying topologies from the perspective of static, time-aggregated networks. Non-Markovian characteristics resulting from the ordering of interactions in temporal networks were identified as one important mechanism that alters causality and affects dynamical processes. So far, an analytical explanation for this phenomenon and for the significant variations observed across different systems is missing. Here we introduce a methodology that allows to analytically predict causality-driven changes of diffusion speed in non-Markovian temporal networks. Validating our predictions in six data sets we show that compared with the time-aggregated network, non-Markovian characteristics can lead to both a slow-down or speed-up of diffusion, which can even outweigh the decelerating effect of community structures in the static topology. Thus, non-Markovian properties of temporal networks constitute an important additional dimension of complexity in time-varying complex systems.

  18. Non-Markovian master equation for a system of Fermions interacting with an electromagnetic field

    SciTech Connect

    Stefanescu, Eliade Scheid, Werner; Sandulescu, Aurel

    2008-05-15

    For a system of charged Fermions interacting with an electromagnetic field, we derive a non-Markovian master equation in the second-order approximation of the weak dissipative coupling. A complex dissipative environment including Fermions, Bosons and the free electromagnetic field is taken into account. Besides the well-known Markovian term of Lindblad's form, that describes the decay of the system by correlated transitions of the system and environment particles, this equation includes new Markovian and non-Markovian terms proceeding from the fluctuations of the self-consistent field of the environment. These terms describe fluctuations of the energy levels, transitions among these levels stimulated by the fluctuations of the self-consistent field of the environment, and the influence of the time-evolution of the environment on the system dynamics. We derive a complementary master equation describing the environment dynamics correlated with the dynamics of the system. As an application, we obtain non-Markovian Maxwell-Bloch equations and calculate the absorption spectrum of a field propagation mode transversing an array of two-level quantum dots.

  19. Geometric phase of a qubit driven by a phase noise laser under non-Markovian dynamics

    SciTech Connect

    Berrada, K.

    2014-01-15

    Robustness of the geometric phase (GP) with respect to the environmental effects is a basic condition for an effective quantum computation. Here, we study quantitatively the GP of a two-level atom system driven by a phase noise laser under non-Markovian dynamics in terms of different parameters involved in the whole system. We find that with the change of the damping coupling, the GP is very sensitive to its properties exhibiting long collapse and revival phenomena, which play a significant role in enhancing the stabilization and control of the system dynamics. Moreover, we show that the GP can be considered as a tool for testing and characterizing the nature of the qubit–environment coupling. Due to the significance of how a system is quantum correlated with its environment in the construction of a scalable quantum computer, the entanglement dynamics between the qubit with its environment under external classical noise is evaluated and investigated during the time evolution. -- Highlights: •Geometric phase under noise phase laser. •Dynamics of the geometric phase under non-Markovian dynamics in the presence of classical noise. •Solution of master equation of the system in terms atomic inversion. •Nonlocal correlation between the system and its environment under non-Markovianity.

  20. Non-Markovian linear response theory for quantum open systems and its applications

    NASA Astrophysics Data System (ADS)

    Shen, H. Z.; Li, D. X.; Yi, X. X.

    2017-01-01

    The Kubo formula is an equation that expresses the linear response of an observable due to a time-dependent perturbation. It has been extended from closed systems to open systems in recent years under the Markovian approximation, but is barely explored for open systems in non-Markovian regimes. In this paper, we derive a formula for the linear response of an open system to a time-independent external field. This response formula is available for both Markovian and non-Markovian dynamics depending on parameters in the spectral density of the environment. As an illustration of the theory, the Hall conductance of a two-band system subjected to environments is derived and discussed. With the tight-binding model, we point out the Hall conductance changes from Markovian to non-Markovian dynamics by modulating the spectral density of the environment. Our results suggest a way to the controlling of the system response, which has potential applications for quantum statistical mechanics and condensed matter physics.

  1. Non-Markovian dynamics in chiral quantum networks with spins and photons

    NASA Astrophysics Data System (ADS)

    Ramos, Tomás; Vermersch, Benoît; Hauke, Philipp; Pichler, Hannes; Zoller, Peter

    2016-06-01

    We study the dynamics of chiral quantum networks consisting of nodes coupled by unidirectional or asymmetric bidirectional quantum channels. In contrast to familiar photonic networks where driven two-level atoms exchange photons via 1D photonic nanostructures, we propose and study a setup where interactions between the atoms are mediated by spin excitations (magnons) in 1D X X spin chains representing spin waveguides. While Markovian quantum network theory eliminates quantum channels as structureless reservoirs in a Born-Markov approximation to obtain a master equation for the nodes, we are interested in non-Markovian dynamics. This arises from the nonlinear character of the dispersion with band-edge effects, and from finite spin propagation velocities leading to time delays in interactions. To account for the non-Markovian dynamics we treat the quantum degrees of freedom of the nodes and connecting channel as a composite spin system with the surrounding of the quantum network as a Markovian bath, allowing for an efficient solution with time-dependent density matrix renormalization-group techniques. We illustrate our approach showing non-Markovian effects in the driven-dissipative formation of quantum dimers, and we present examples for quantum information protocols involving quantum state transfer with engineered elements as basic building blocks of quantum spintronic circuits.

  2. Non-Markovian linear response theory for quantum open systems and its applications.

    PubMed

    Shen, H Z; Li, D X; Yi, X X

    2017-01-01

    The Kubo formula is an equation that expresses the linear response of an observable due to a time-dependent perturbation. It has been extended from closed systems to open systems in recent years under the Markovian approximation, but is barely explored for open systems in non-Markovian regimes. In this paper, we derive a formula for the linear response of an open system to a time-independent external field. This response formula is available for both Markovian and non-Markovian dynamics depending on parameters in the spectral density of the environment. As an illustration of the theory, the Hall conductance of a two-band system subjected to environments is derived and discussed. With the tight-binding model, we point out the Hall conductance changes from Markovian to non-Markovian dynamics by modulating the spectral density of the environment. Our results suggest a way to the controlling of the system response, which has potential applications for quantum statistical mechanics and condensed matter physics.

  3. Equivalence of the measures of non-Markovianity for open two-level systems

    NASA Astrophysics Data System (ADS)

    Zeng, Hao-Sheng; Tang, Ning; Zheng, Yan-Ping; Wang, Guo-You

    2011-09-01

    Different measures have been presented to depict the deviation of quantum time evolution in open systems from Markovian processes. We demonstrate that the measure proposed by Breuer, Laine, and Piilo [Phys. Rev. Lett.PRLTAO0031-900710.1103/PhysRevLett.103.210401 103, 210401 (2009)] and the two measures proposed by Rivas, Huelga, and Plenio [Phys. Rev. Lett.PRLTAO0031-900710.1103/PhysRevLett.105.050403 105, 050403 (2010)] have exactly the same non-Markovian time-evolution intervals and thus are really equivalent to each other when they are applied to open two-level systems coupled to environments via the Jaynes-Cummings or dephasing models. This equivalence implies that the three measures, in different ways, capture the intrinsic character of the non-Markovianity of quantum evolutional processes. We also show that the maximization in the definition of the first measure can be actually removed for the considered models without influencing the sensibility of the measure to detect non-Markovianity.

  4. Non-Markovian dynamics in the extended cluster spin-1/2 XX chain

    NASA Astrophysics Data System (ADS)

    Mahmoudi, M.; Mahdavifar, S.; Zadeh, T. Mohammad Ali; Soltani, M. R.

    2017-01-01

    We study the dynamics of entanglement, mutual information, and quantum discord in the extended cluster spin-1/2 XX chain, equivalent to a one-dimensional spin-1/2 XX model with three-spin interaction (TSI). Selecting the nearest neighbor pair spins as an open quantum system, the rest of the chain plays the role of the environment. The two-point Heisenberg and the TSI are responsible for coupling between the system and the environment. Although the revival phenomenon of quantum correlations as an indication of non-Markovian dynamics is observed for TSI stronger than the Heisenberg interaction, the study of the trace distance has proven that the dynamical phase transition from the Markovian to the non-Markovian regime happens at a critical value where the TSI is equal to half of the Heisenberg interaction. By focusing on the nearest neighbor pair spins of the environment, we have also shown that the dynamics of quantum correlation in the environment is sensitive to Markovian and non-Markovian regions.

  5. Caveats of mean first-passage time methods applied to the crystallization transition: Effects of non-Markovianity

    NASA Astrophysics Data System (ADS)

    Jungblut, Swetlana; Dellago, Christoph

    2015-02-01

    Using the crystallization transition in a Lennard-Jones fluid as example, we show that mean first-passage time based methods may underestimate the reaction rates. We trace the reason of this deficiency back to the non-Markovian character of the dynamics caused by the projection to a poorly chosen reaction coordinate. The non-Markovianity of the dynamics becomes apparent in the behavior of the recurrence times.

  6. Exact master equation for a spin interacting with a spin bath: Non-Markovianity and negative entropy production rate

    NASA Astrophysics Data System (ADS)

    Bhattacharya, Samyadeb; Misra, Avijit; Mukhopadhyay, Chiranjib; Pati, Arun Kumar

    2017-01-01

    An exact canonical master equation of the Lindblad form is derived for a central spin interacting uniformly with a sea of completely unpolarized spins. The Kraus operators for the dynamical map are also derived. The non-Markovianity of the dynamics in terms of the divisibility breaking of the dynamical map and the increase of the trace distance fidelity between quantum states is shown. Moreover, it is observed that the irreversible entropy production rate is always negative (for a fixed initial state) whenever the dynamics exhibits non-Markovian behavior. In continuation with the study of witnessing non-Markovianity, it is shown that the positive rate of change of the purity of the central qubit is a faithful indicator of the non-Markovian information backflow. Given the experimental feasibility of measuring the purity of a quantum state, a possibility of experimental demonstration of non-Markovianity and the negative irreversible entropy production rate is addressed. This gives the present work considerable practical importance for detecting the non-Markovianity and the negative irreversible entropy production rate.

  7. Error Distributions on Large Entangled States with Non-Markovian Dynamics

    NASA Astrophysics Data System (ADS)

    McCutcheon, Dara P. S.; Lindner, Netanel H.; Rudolph, Terry

    2014-12-01

    We investigate the distribution of errors on a computationally useful entangled state generated via the repeated emission from an emitter undergoing strongly non-Markovian evolution. For emitter-environment coupling of pure-dephasing form, we show that the probability that a particular patten of errors occurs has a bound of Markovian form, and thus, accuracy threshold theorems based on Markovian models should be just as effective. Beyond the pure-dephasing assumption, though complicated error structures can arise, they can still be qualitatively bounded by a Markovian error model.

  8. Decoherence suppression of tripartite entanglement in non-Markovian environments by using weak measurements

    NASA Astrophysics Data System (ADS)

    Ding, Zhi-yong; He, Juan; Ye, Liu

    2017-02-01

    A feasible scheme for protecting the Greenberger-Horne-Zeilinger (GHZ) entanglement state in non-Markovian environments is proposed. It consists of prior weak measurement on each qubit before the interaction with decoherence environments followed by post quantum measurement reversals. It is shown that both the fidelity and concurrence of the GHZ state can be effectively improved. Meanwhile, we also verified that our scenario can enhance tripartite nonlocality remarkably. In addition, the result indicates that the larger the weak measurement strength, the better the effectiveness of the scheme with the lower success probability.

  9. Exact non-Markovian master equation for the spin-boson and Jaynes-Cummings models

    NASA Astrophysics Data System (ADS)

    Ferialdi, L.

    2017-02-01

    We provide the exact non-Markovian master equation for a two-level system interacting with a thermal bosonic bath, and we write the solution of such a master equation in terms of the Bloch vector. We show that previous approximated results are particular limits of our exact master equation. We generalize these results to more complex systems involving an arbitrary number of two-level systems coupled to different thermal baths, providing the exact master equations also for these systems. As an example of this general case we derive the master equation for the Jaynes-Cummings model.

  10. Non-Markovian autoresonant dynamics of tunneling from discrete to continuum modes

    SciTech Connect

    Barak, Assaf; Segev, Mordechai

    2011-09-15

    We study the autoresonant dynamics of a discrete level coupled to a continuum, and show that passing adiabatically through a linear resonance, above a well-defined threshold, yields a transition to nonlinear phase locking and linear non-Markovian decay to the continuum. This process results in broadening of the population of the continuum modes beyond its natural linewidth. This concept can be employed to alter spontaneous emission, where driving an atom into phase locking with continuum modes will yield the emission of short pulses.

  11. Role of environmental correlations in the non-Markovian dynamics of a spin system

    SciTech Connect

    Lorenzo, Salvatore; Plastina, Francesco; Paternostro, Mauro

    2011-09-15

    We study the dynamics of a chain of interacting quantum particles affected by an individual or collective environment(s), focusing on the role played by the environmental quantum correlations over the evolution of the chain. The presence of entanglement in the state of the environment magnifies the non-Markovian nature of the chain's dynamics, giving rise to structures in figures of merit such as spin entanglement and purity that are not observed under a separable environmental state. Our analysis can be relevant to problems tackling the open-system dynamics of biological complexes of strong current interest.

  12. Efficient superdense coding in the presence of non-Markovian noise

    NASA Astrophysics Data System (ADS)

    Liu, Bi-Heng; Hu, Xiao-Min; Huang, Yun-Feng; Li, Chuan-Feng; Guo, Guang-Can; Karlsson, Antti; Laine, Elsi-Mari; Maniscalco, Sabrina; Macchiavello, Chiara; Piilo, Jyrki

    2016-04-01

    Many quantum information tasks rely on entanglement, which is used as a resource, for example, to enable efficient and secure communication. Typically, noise, accompanied by loss of entanglement, reduces the efficiency of quantum protocols. We develop and demonstrate experimentally a superdense coding scheme with noise, where the decrease of entanglement in Alice's encoding state does not reduce the efficiency of the information transmission. Having an almost fully dephased classical two-photon polarization state at the time of encoding with concurrence of 0.163+/-0.007 , we reach values of mutual information close to 1.52+/- 0.02 (1.89+/- 0.05) with 3-state (4-state) encoding. This high efficiency relies both on non-Markovian features, that Bob exploits just before his Bell state measurement, and on very high visibility (99.6{%}+/-0.1{%}) of the Hong-Ou-Mandel interference within the experimental set-up. Our proof-of-principle results with measurements on mutual information pave the way for exploiting non-Markovianity to improve the efficiency and security of quantum information processing tasks.

  13. Quantum Zeno-type effect and non-Markovianity in a three-level system

    PubMed Central

    Karlsson, Antti; Francica, Francesco; Piilo, Jyrki; Plastina, Francesco

    2016-01-01

    We study the coexistence of the quantum Zeno-type effect and non-Markovianity for a system decaying in a structured bosonic environment and subject to a control field. The interaction with the environment induces decay from the excited to the ground level, which, in turn, is coherently coupled to another meta-stable state. The control of the strength of the coherent coupling between the stable levels allows the engineering of both the dissipation and of the memory effects, without modifying neither the system-reservoir interaction, nor environmental properties. We use this framework in two different parameter regimes corresponding to fast (bad cavity limit) and slow dissipation (good cavity limit) in the original and un-controlled qubit system. Our results show a non-monotonic behavior of memory effects when increasing the effectiveness of the Zeno-like freezing. Moreover, we identify a new source of memory effects which allows the persistence of non-Markovianity for long times while the excited state has already been depleted. PMID:27996016

  14. Markovian and Non-Markovian Protein Sequence Evolution: Aggregated Markov Process Models

    PubMed Central

    Kosiol, Carolin; Goldman, Nick

    2011-01-01

    Over the years, there have been claims that evolution proceeds according to systematically different processes over different timescales and that protein evolution behaves in a non-Markovian manner. On the other hand, Markov models are fundamental to many applications in evolutionary studies. Apparent non-Markovian or time-dependent behavior has been attributed to influence of the genetic code at short timescales and dominance of physicochemical properties of the amino acids at long timescales. However, any long time period is simply the accumulation of many short time periods, and it remains unclear why evolution should appear to act systematically differently across the range of timescales studied. We show that the observed time-dependent behavior can be explained qualitatively by modeling protein sequence evolution as an aggregated Markov process (AMP): a time-homogeneous Markovian substitution model observed only at the level of the amino acids encoded by the protein-coding DNA sequence. The study of AMPs sheds new light on the relationship between amino acid-level and codon-level models of sequence evolution, and our results suggest that protein evolution should be modeled at the codon level rather than using amino acid substitution models. PMID:21718704

  15. Self-Diffusion and Non-Markovian Dynamics in Strongly Coupled Ultracold Neutral Plasmas

    NASA Astrophysics Data System (ADS)

    Strickler, Trevor; Langin, Thomas; McQuillen, Patrick; Killian, Thomas

    2015-05-01

    Collisional processes in weakly coupled plasmas are well-described by the Landau-Spitzer formalism. Classical plasma theory breaks down, however, in strongly coupled systems because of the non-perturbative nature of particle interactions, and improving our understanding of this regime is an important fundamental challenge. We present experimental measurements of the self-diffusion constant and observation of non-Markovian equilibration for strongly coupled ions in an ultracold neutral plasma (UCNP) created by photoionizing strontium atoms in a magneto-optical trap. Our diagnostic uses optical pumping to create ``spin-tagged'' subpopulations of ions having skewed velocity distributions that then relax back to equilibrium. A Green-Kubo relation is used to extract the self-diffusion constant from the equilibration curves. With improved time resolution (down to 30 ns), we have explored the early time dynamics of these skewed ion distributions within 100 ns after the optical pumping, where molecular dynamics simulations predict non-Markovian deviations from the exponential velocity damping expected for weakly coupled systems. At longer times, we observe oscillations of the average velocity during the relaxation, which indicate coupling of single-particle motion to collective modes. This work was supported by the United States National Science Foundation and the Department of Energy (PHY-0714603), and the Air Force Office of Scientific Research (FA9550-12-1-0267).

  16. Quantum Zeno-type effect and non-Markovianity in a three-level system

    NASA Astrophysics Data System (ADS)

    Karlsson, Antti; Francica, Francesco; Piilo, Jyrki; Plastina, Francesco

    2016-12-01

    We study the coexistence of the quantum Zeno-type effect and non-Markovianity for a system decaying in a structured bosonic environment and subject to a control field. The interaction with the environment induces decay from the excited to the ground level, which, in turn, is coherently coupled to another meta-stable state. The control of the strength of the coherent coupling between the stable levels allows the engineering of both the dissipation and of the memory effects, without modifying neither the system-reservoir interaction, nor environmental properties. We use this framework in two different parameter regimes corresponding to fast (bad cavity limit) and slow dissipation (good cavity limit) in the original and un-controlled qubit system. Our results show a non-monotonic behavior of memory effects when increasing the effectiveness of the Zeno-like freezing. Moreover, we identify a new source of memory effects which allows the persistence of non-Markovianity for long times while the excited state has already been depleted.

  17. Dynamics of interacting qubits coupled to a common bath: Non-Markovian quantum-state-diffusion approach

    SciTech Connect

    Zhao Xinyu; Jing Jun; Corn, Brittany; Yu Ting

    2011-09-15

    Non-Markovian dynamics is studied for two interacting qubits strongly coupled to a dissipative bosonic environment. We derive a non-Markovian quantum-state-diffusion (QSD) equation for the coupled two-qubit system without any approximations, and in particular, without the Markov approximation. As an application and illustration of our derived time-local QSD equation, we investigate the temporal behavior of quantum coherence dynamics. In particular, we find a strongly non-Markovian regime where entanglement generation is significantly modulated by the environmental memory. Additionally, we study residual entanglement in the steady state by analyzing the steady-state solution of the QSD equation. Finally, we discuss an approximate QSD equation.

  18. Effect of memory in non-Markovian Boolean networks illustrated with a case study: A cell cycling process

    NASA Astrophysics Data System (ADS)

    Ebadi, H.; Saeedian, M.; Ausloos, M.; Jafari, G. R.

    2016-11-01

    The Boolean network is one successful model to investigate discrete complex systems such as the gene interacting phenomenon. The dynamics of a Boolean network, controlled with Boolean functions, is usually considered to be a Markovian (memory-less) process. However, both self-organizing features of biological phenomena and their intelligent nature should raise some doubt about ignoring the history of their time evolution. Here, we extend the Boolean network Markovian approach: we involve the effect of memory on the dynamics. This can be explored by modifying Boolean functions into non-Markovian functions, for example, by investigating the usual non-Markovian threshold function —one of the most applied Boolean functions. By applying the non-Markovian threshold function on the dynamical process of the yeast cell cycle network, we discover a power-law-like memory with a more robust dynamics than the Markovian dynamics.

  19. Deterministic and Stochastic Descriptions of Gene Expression Dynamics

    NASA Astrophysics Data System (ADS)

    Marathe, Rahul; Bierbaum, Veronika; Gomez, David; Klumpp, Stefan

    2012-09-01

    A key goal of systems biology is the predictive mathematical description of gene regulatory circuits. Different approaches are used such as deterministic and stochastic models, models that describe cell growth and division explicitly or implicitly etc. Here we consider simple systems of unregulated (constitutive) gene expression and compare different mathematical descriptions systematically to obtain insight into the errors that are introduced by various common approximations such as describing cell growth and division by an effective protein degradation term. In particular, we show that the population average of protein content of a cell exhibits a subtle dependence on the dynamics of growth and division, the specific model for volume growth and the age structure of the population. Nevertheless, the error made by models with implicit cell growth and division is quite small. Furthermore, we compare various models that are partially stochastic to investigate the impact of different sources of (intrinsic) noise. This comparison indicates that different sources of noise (protein synthesis, partitioning in cell division) contribute comparable amounts of noise if protein synthesis is not or only weakly bursty. If protein synthesis is very bursty, the burstiness is the dominant noise source, independent of other details of the model. Finally, we discuss two sources of extrinsic noise: cell-to-cell variations in protein content due to cells being at different stages in the division cycles, which we show to be small (for the protein concentration and, surprisingly, also for the protein copy number per cell) and fluctuations in the growth rate, which can have a significant impact.

  20. Non-Gaussian fluctuations and non-Markovian effects in the nuclear fusion process: Langevin dynamics emerging from quantum molecular dynamics simulations.

    PubMed

    Wen, Kai; Sakata, Fumihiko; Li, Zhu-Xia; Wu, Xi-Zhen; Zhang, Ying-Xun; Zhou, Shan-Gui

    2013-07-05

    Macroscopic parameters as well as precise information on the random force characterizing the Langevin-type description of the nuclear fusion process around the Coulomb barrier are extracted from the microscopic dynamics of individual nucleons by exploiting the numerical simulation of the improved quantum molecular dynamics. It turns out that the dissipation dynamics of the relative motion between two fusing nuclei is caused by a non-Gaussian distribution of the random force. We find that the friction coefficient as well as the time correlation function of the random force takes particularly large values in a region a little bit inside of the Coulomb barrier. A clear non-Markovian effect is observed in the time correlation function of the random force. It is further shown that an emergent dynamics of the fusion process can be described by the generalized Langevin equation with memory effects by appropriately incorporating the microscopic information of individual nucleons through the random force and its time correlation function.

  1. Noise spectrum of quantum transport through double quantum dots: Renormalization and non-Markovian effects

    NASA Astrophysics Data System (ADS)

    Shi, Pengqin; Hu, Menghan; Ying, Yaofeng; Jin, Jinshuang

    2016-09-01

    Based on the time-nonlocal particle number-resolved master equation, we investigate the sequential electron transport through the interacting double quantum dots. Our calculations show that there exists the effect of energy renormalization in the dispersion of the bath interaction spectrum and it is sensitive to the the bandwidth of the bath. This effect would strongly affect the stationary current and its zero-frequency shot noise for weak inter-dot coherent coupling strength, but for strong inter-dot coupling regime, it is negligible due to the strong intrinsic Rabi coherent dynamics. Moreover, the possible observable effects of the energy renormalization in the noise spectrum are also investigated through the Rabi coherence signal. Finally, the non-Markovian effect is manifested in the finite-frequency noise spectrum with the appearance of quasisteps, and the magnitude of these quasisteps are modified by the dispersion function.

  2. Electronic energy transfer in model photosynthetic systems: Markovian vs. non-Markovian dynamics.

    PubMed

    Singh, Navinder; Brumer, Paul

    2011-01-01

    A simple numerical algorithm for solving the non-Markovian master equation in the second Born approximation is developed and used to propagate the traditional dimer system that models electronic energy transfer in photosynthetic systems. Specifically, the coupled integro-differential equations for the reduced density matrix are solved by an efficient auxiliary function method in both the energy and site representations. In addition to giving exact results to this order, the approach allows us to access the range of the reorganization energy and decay rates of the phonon auto-correlation function for which the Markovian Redfield theory and the second-order approximation is useful. For example, the use of Redfield theory for lambda > 10 cm(-1) in Fenna-Mathews-Olson (FMO) type systems is shown to be fundamentally inaccurate.

  3. Theoretical approach to characterize the non-Markovianity and diffusion through the influx of the information

    NASA Astrophysics Data System (ADS)

    Berrada, K.

    2016-11-01

    In this paper, we study the Fisher information for a quantum system consisting of two identical qubits, each of them locally interacting with a bosonic reservoir in the same environment for non-Markovian open, dissipative quantum system. Based on the influx of the information, we propose an information-theoretical approach for characterizing the time-dependent memory effect of environment and diffusion function under the effect of the physical parameters. More precisely, an interesting monotonic relation between the time derivative of quantum Fisher information (QFI) and diffusion function behavior is observed during the time evolution. The phenomenon is that the QFI, namely the precision of estimation, changes dramatically with the environment structure. The dependence of the physical parameters shows that the increasing in the temperature will damage the amount of the QFI with respect of the ratio between the reservoir cutoff frequency and the system oscillation frequency.

  4. Experimental on-demand recovery of entanglement by local operations within non-Markovian dynamics

    NASA Astrophysics Data System (ADS)

    Orieux, Adeline; D'Arrigo, Antonio; Ferranti, Giacomo; Franco, Rosario Lo; Benenti, Giuliano; Paladino, Elisabetta; Falci, Giuseppe; Sciarrino, Fabio; Mataloni, Paolo

    2015-02-01

    In many applications entanglement must be distributed through noisy communication channels that unavoidably degrade it. Entanglement cannot be generated by local operations and classical communication (LOCC), implying that once it has been distributed it is not possible to recreate it by LOCC. Recovery of entanglement by purely local control is however not forbidden in the presence of non-Markovian dynamics, and here we demonstrate in two all-optical experiments that such entanglement restoration can even be achieved on-demand. First, we implement an open-loop control scheme based on a purely local operation, without acquiring any information on the environment; then, we use a closed-loop scheme in which the environment is measured, the outcome controling the local operations on the system. The restored entanglement is a manifestation of ``hidden'' quantum correlations resumed by the local control. Relying on local control, both schemes improve the efficiency of entanglement sharing in distributed quantum networks.

  5. Geometric phase of a qubit driven by a phase noise laser under non-Markovian dynamics

    NASA Astrophysics Data System (ADS)

    Berrada, K.

    2014-01-01

    Robustness of the geometric phase (GP) with respect to the environmental effects is a basic condition for an effective quantum computation. Here, we study quantitatively the GP of a two-level atom system driven by a phase noise laser under non-Markovian dynamics in terms of different parameters involved in the whole system. We find that with the change of the damping coupling, the GP is very sensitive to its properties exhibiting long collapse and revival phenomena, which play a significant role in enhancing the stabilization and control of the system dynamics. Moreover, we show that the GP can be considered as a tool for testing and characterizing the nature of the qubit-environment coupling. Due to the significance of how a system is quantum correlated with its environment in the construction of a scalable quantum computer, the entanglement dynamics between the qubit with its environment under external classical noise is evaluated and investigated during the time evolution.

  6. Analysis of non-Markovian coupling of a lattice-trapped atom to free space

    NASA Astrophysics Data System (ADS)

    Stewart, Michael; Krinner, Ludwig; Pazmiño, Arturo; Schneble, Dominik

    2017-01-01

    Behavior analogous to that of spontaneous emission in photonic band-gap materials has been predicted for an atom-optical system consisting of an atom confined in a well of a state-dependent optical lattice that is coupled to free space through an internal-state transition [de Vega et al., Phys. Rev. Lett. 101, 260404 (2008), 10.1103/PhysRevLett.101.260404]. Using the Weisskopf-Wigner approach and considering a one-dimensional geometry, we analyze the properties of this system in detail, including the evolution of the lattice-trapped population, the momentum distribution of emitted matter waves, and the detailed structure of an evanescent matter-wave state below the continuum boundary. We compare and contrast our findings for the transition from Markovian to non-Markovian behaviors to those previously obtained for three dimensions.

  7. Non-Markovian transmission through two quantum dots connected by a continuum

    NASA Astrophysics Data System (ADS)

    Cao, Yunshan; Xu, Luting; Meng, Jianyu; Li, Xin-Qi

    2012-10-01

    We consider a transport setup that contains a double-dot connected by a continuum. Via an exact solution of the time-dependent Schrödinger equation, we demonstrate a highly non-Markovian quantum-coherence-mediated transport through this dot-continuum-dot (DCD) system, which is in contrast with the common premise since in typical case a quantum particle does not reenter the system of interest once it irreversibly decayed into a continuum (such as the spontaneous emission of a photon). We also find that this DCD system supports an unusual steady state with unequal source and drain currents, owing to electrons irreversibly entering the continuum and floating there.

  8. Non-Markovian Brownian motion in a magnetic field and time-dependent force fields

    NASA Astrophysics Data System (ADS)

    Hidalgo-Gonzalez, J. C.; Jiménez-Aquino, J. I.; Romero-Bastida, M.

    2016-11-01

    This work focuses on the derivation of the velocity and phase-space generalized Fokker-Planck equations for a Brownian charged particle embedded in a memory thermal bath and under the action of force fields: a constant magnetic field and arbitrary time-dependent force fields. To achieve the aforementioned goal we use a Gaussian but non-Markovian generalized Langevin equation with an arbitrary friction memory kernel. In a similar way, the generalized diffusion equation in the zero inertia limit is also derived. Additionally we show, in the absence of the time-dependent external forces, that, if the fluctuation-dissipation relation of the second kind is valid, then the generalized Langevin dynamics associated with the charged particle reaches a stationary state in the large-time limit. The consistency of our theoretical results is also verified when they are compared with those derived in the absence of the force fields and in the Markovian case.

  9. Dynamics and protection of entanglement in n -qubit systems within Markovian and non-Markovian environments

    NASA Astrophysics Data System (ADS)

    Nourmandipour, A.; Tavassoly, M. K.; Rafiee, M.

    2016-02-01

    We provide an analytical investigation of the pairwise entanglement dynamics for a system, consisting of an arbitrary number of qubits dissipating into a common and non-Markovian environment for both weak- and strong-coupling regimes. In the latter case, a revival of pairwise entanglement due to the memory depth of the environment is observed. The leakage of photons into a continuum state is assumed to be the source of dissipation. We show that for an initially Werner state, the environment washes out the pairwise entanglement, but a series of nonselective measurements can protect the relevant entanglement. On the other hand, by limiting the number of qubits initially in the superposition of single excitation, a stationary entanglement can be created between qubits initially in the excited and ground states. Finally, we determine the stationary distribution of the entanglement versus the total number of qubits in the system.

  10. Non-Markovian dynamics of fully coupled fermionic and bosonic oscillators

    NASA Astrophysics Data System (ADS)

    Sargsyan, V. V.; Lacroix, D.; Adamian, G. G.; Antonenko, N. V.

    2017-03-01

    The non-Markovian Langevin approach is applied to study the dynamics of fermionic (bosonic) oscillator linearly coupled to a fermionic (bosonic) environment. The analytical expressions for occupation numbers in two different types of couplings (rotating-wave approximation and fully coupled) are compared and discussed. The weak-coupling and high- and low-temperature limits are considered as well. The conditions under which the environment imposes its thermal equilibrium on the collective subsystem are discussed. The sameness of the results, obtained with both the Langevin approach and the discretized environment method are shown. Short- and long-time nonequilibrium dynamics of fermionic and bosonic open quantum systems are analyzed both analytically and numerically.

  11. Experimental on-demand recovery of entanglement by local operations within non-Markovian dynamics

    PubMed Central

    Orieux, Adeline; D'Arrigo, Antonio; Ferranti, Giacomo; Franco, Rosario Lo; Benenti, Giuliano; Paladino, Elisabetta; Falci, Giuseppe; Sciarrino, Fabio; Mataloni, Paolo

    2015-01-01

    In many applications entanglement must be distributed through noisy communication channels that unavoidably degrade it. Entanglement cannot be generated by local operations and classical communication (LOCC), implying that once it has been distributed it is not possible to recreate it by LOCC. Recovery of entanglement by purely local control is however not forbidden in the presence of non-Markovian dynamics, and here we demonstrate in two all-optical experiments that such entanglement restoration can even be achieved on-demand. First, we implement an open-loop control scheme based on a purely local operation, without acquiring any information on the environment; then, we use a closed-loop scheme in which the environment is measured, the outcome controling the local operations on the system. The restored entanglement is a manifestation of “hidden” quantum correlations resumed by the local control. Relying on local control, both schemes improve the efficiency of entanglement sharing in distributed quantum networks. PMID:25712406

  12. Digital quantum simulation of many-body non-Markovian dynamics

    NASA Astrophysics Data System (ADS)

    Sweke, R.; Sanz, M.; Sinayskiy, I.; Petruccione, F.; Solano, E.

    2016-08-01

    We present an algorithmic method for the digital quantum simulation of many-body locally indivisible non-Markovian open quantum systems. It consists of two parts: first, a Suzuki-Lie-Trotter decomposition of the global system propagator into the product of subsystem propagators, which may not be quantum channels, and second, an algorithmic procedure for the implementation of the subsystem propagators through unitary operations and measurements on a dilated space. By providing rigorous error bounds for the relevant Suzuki-Lie-Trotter decomposition, we are able to analyze the efficiency of the method, and connect it with an appropriate measure of the local indivisibility of the system. In light of our analysis, the proposed method is expected to be experimentally achievable for a variety of interesting cases.

  13. Quantum Fisher information of the GHZ state due to classical phase noise lasers under non-Markovian environment

    NASA Astrophysics Data System (ADS)

    Chen, Yu; Zou, Jian; Yang, Zi-Yi; Li, Longwu; Li, Hai; Shao, Bin

    2016-08-01

    The dynamics of N-qubit GHZ state quantum Fisher information (QFI) under phase noise lasers (PNLs) driving is investigated in terms of non-Markovian master equation. We first investigate the non-Markovian dynamics of the QFI of N-qubit GHZ state and show that when the ratio of the PNL rate and the system-environment coupling strength is very small, the oscillations of the QFIs decay slower which corresponds to the non-Markovian region; yet when it becomes large, the QFIs monotonously decay which corresponds to the Markovian region. When the atom number N increases, QFIs in both regions decay faster. We further find that the QFI flow disappears suddenly followed by a sudden birth depending on the ratio of the PNL rate and the system-environment coupling strength and the atom number N, which unveil a fundamental connection between the non-Markovian behaviors and the parameters of system-environment couplings. We discuss two optimal positive operator-valued measures (POVMs) for two different strategies of our model and find the condition of the optimal measurement. At last, we consider the QFI of two atoms with qubit-qubit interaction under random telegraph noises (RTNs).

  14. A Bohmian approach to the non-Markovian non-linear Schrödinger–Langevin equation

    SciTech Connect

    Vargas, Andrés F.; Morales-Durán, Nicolás; Bargueño, Pedro

    2015-05-15

    In this work, a non-Markovian non-linear Schrödinger–Langevin equation is derived from the system-plus-bath approach. After analyzing in detail previous Markovian cases, Bohmian mechanics is shown to be a powerful tool for obtaining the desired generalized equation.

  15. Fractional noise destroys or induces a stochastic bifurcation

    SciTech Connect

    Yang, Qigui; Zeng, Caibin; Wang, Cong

    2013-12-15

    Little seems to be known about the stochastic bifurcation phenomena of non-Markovian systems. Our intention in this paper is to understand such complex dynamics by a simple system, namely, the Black-Scholes model driven by a mixed fractional Brownian motion. The most interesting finding is that the multiplicative fractional noise not only destroys but also induces a stochastic bifurcation under some suitable conditions. So it opens a possible way to explore the theory of stochastic bifurcation in the non-Markovian framework.

  16. Stochastic Schroedinger equations with general complex Gaussian noises

    SciTech Connect

    Bassi, Angelo

    2003-06-01

    Within the framework of non-Markovian stochastic Schroedinger equations, we generalize the results of [W. T. Strunz, Phys. Lett. A 224, 25 (1996)] to the case of general complex Gaussian noises; we analyze the two important cases of purely real and purely imaginary stochastic processes.

  17. Feedback of Non-Markovian Quantum Dynamics in Dimer System: the Effect of Correlated Environments and Temperature

    NASA Astrophysics Data System (ADS)

    Zhu, Qin-Sheng; Ding, Chang-Chun; Wu, Shao-Yi; Lai, Wei

    2015-12-01

    In this work, we research the non-Markovian dynamical process of the dimer system and the effect of the interactional environments for the information feedback under different temperature T. Not only the functional relation of the trace distance and the fidelity are obtained, but also the changing properties of the fidelity and the measure quantity {\\scr N}(φ) which are used to quantify the degree of the non-Markovian process are discussed as a function of the interactional strength q between the environments. These results show a possible method which can preserve the information and enhance the distinguishability of the pair of states in decohering environments. Supported by the Fundamental Research Funds for the Central Universities under Grants No. ZYGX2012J046

  18. The Role of the Total Entropy Production in the Dynamics of Open Quantum Systems in Detection of Non-Markovianity

    NASA Astrophysics Data System (ADS)

    Salimi, S.; Haseli, S.; Khorashad, A. S.; Adabi, F.

    2016-09-01

    The interaction between system and environment is a fundamental concept in the theory of open quantum systems. As a result of the interaction, an amount of correlation (both classical and quantum) emerges between the system and the environment. In this work, we recall the quantity that will be very useful to describe the emergence of the correlation between the system and the environment, namely, the total entropy production. Appearance of total entropy production is due to the entanglement production between the system and the environment. In this work, we discuss about the role of the total entropy production for detecting the non-Markovianity. By utilizing the relation between the total entropy production and total correlation between subsystems, one can see a temporary decrease of total entropy production is a signature of non-Markovianity. We apply our criterion for the special case, where the composite system has initial correlation with environment.

  19. Quench of non-Markovian coherence in the deep sub-Ohmic spin–boson model: A unitary equilibration scheme

    SciTech Connect

    Yao, Yao

    2015-09-15

    The deep sub-Ohmic spin–boson model shows a longstanding non-Markovian coherence at low temperature. Motivating to quench this robust coherence, the thermal effect is unitarily incorporated into the time evolution of the model, which is calculated by the adaptive time-dependent density matrix renormalization group algorithm combined with the orthogonal polynomials theory. Via introducing a unitary heating operator to the bosonic bath, the bath is heated up so that a majority portion of the bosonic excited states is occupied. It is found in this situation the coherence of the spin is quickly quenched even in the coherent regime, in which the non-Markovian feature dominates. With this finding we come up with a novel way to implement the unitary equilibration, the essential term of the eigenstate-thermalization hypothesis, through a short-time evolution of the model.

  20. The Design of Collectives of Agents to Control Non-Markovian Systems

    NASA Technical Reports Server (NTRS)

    Lawson, John W.; Wolpert, David H.

    2004-01-01

    The Collective Intelligence (COIN) framework concerns the design of collectives of reinforcement-learning agents such that their interaction causes a provided "world" utility function concerning the entire collective to be maximized. Previously, we applied that framework to scenarios involving Markovian dynamics where no re-evolution of the system from counter-factual initial conditions (an often expensive calculation) is permitted. This approach sets the individual utility function of each agent to be both aligned with the world utility, and at the same time, easy for the associated agents to optimize. Here we extend that approach to systems involving non-Markovian dynamics. In computer simulations, we compare our techniques with each other and with conventional "team games". We show whereas in team games performance often degrades badly with time, it steadily improves when our techniques are used. We also investigate situations where the system's dimensionality is effectively reduced. We show that this leads to difficulties in the agents ability to learn. The implication is that learning is a property only of high-enough dimensional systems.

  1. Non-Markovian dynamics in plasmon-induced spontaneous emission interference

    NASA Astrophysics Data System (ADS)

    Thanopulos, I.; Yannopapas, V.; Paspalakis, E.

    2017-02-01

    We investigate theoretically the non-Markovian dynamics of a degenerate V-type quantum emitter in the vicinity of a metallic nanosphere, a system that exhibits quantum interference in spontaneous emission due to the anisotropic Purcell effect. We calculate numerically the electromagnetic Green's tensor and employ the effective modes differential equation method for calculating the quantum dynamics of the emitter population, with respect to the resonance frequency and the initial state of the emitter, as well as its distance from the nanosphere. We find that the emitter population evolution varies between a gradual total decay and a partial decay combined with oscillatory population dynamics, depending strongly on the specific values of the above three parameters. Under strong-coupling conditions, coherent population trapping can be observed in this system. We compare our exact results with results when the flat continuum approximation for the vacuum modified by the metallic nanosphere is applied. We conclude that the flat continuum approximation is an excellent approximation only when the spectral density of the system under study is characterized by nonoverlapping plasmonic resonances.

  2. Extracting work from a single reservoir in the non-Markovian underdamped regime.

    PubMed

    Paredes-Altuve, Oscar; Medina, Ernesto; Colmenares, Pedro J

    2016-12-01

    We derive optimal-work finite time protocols for a colloidal particle in a harmonic well in the general non-Markovian underdamped regime in contact with a single reservoir. Optimal-work protocols with and without measurements of position and velocity are shown to be linear in time. In order to treat the underdamped regime one must address forcing the particle at the start and at the end of a protocol, conditions which dominate the short time behavior of the colloidal particle. We find that for protocols without measurement the least work by an external agent decreases linearly for forced start-stop conditions while those only forced at starting conditions are quadratic (slower) at short times, while both decrease asymptotically to zero for quasistatic processes. When measurements are performed, protocols with start-end forcing are still more efficient at short times but can be overtaken by start-only protocols at a threshold time. Measurement protocols derive work from the reservoir but always below that predicted by Sagawa's generalization of the second law. Velocity measurement protocols are more efficient in deriving work than position measurements.

  3. The Design of Collectives of Agents to Control Non-Markovian Systems

    NASA Technical Reports Server (NTRS)

    Lawson, John W.; Wolpert, David H.; Clancy, Daniel (Technical Monitor)

    2002-01-01

    The 'Collective Intelligence' (COIN) framework concerns the design of collectives of reinforcement-learning agents such that their interaction causes a provided 'world' utility function concerning the entire collective to be maximized. Previously, we applied that framework to scenarios involving Markovian dynamics where no re-evolution of the system from counter-factual initial conditions (an often expensive calculation) is permitted. This approach sets the individual utility function of each agent to be both aligned with the world utility, and at the same time, easy for the associated agents to optimize. Here we extend that approach to systems involving non-Markovian dynamics. In computer simulations, we compare our techniques with each other and with conventional-'team games'. We show whereas in team games performance often degrades badly with time, it steadily improves when our techniques are used. We also investigate situations where the system's dimensionality is effectively reduced. We show that this leads to difficulties in the agents' ability to learn. The implication is that 'learning' is a property only of high-enough dimensional systems.

  4. Extending the applicability of Redfield theories into highly non-Markovian regimes

    SciTech Connect

    Montoya-Castillo, Andrés; Reichman, David R.; Berkelbach, Timothy C.

    2015-11-21

    We present a new, computationally inexpensive method for the calculation of reduced density matrix dynamics for systems with a potentially large number of subsystem degrees of freedom coupled to a generic bath. The approach consists of propagation of weak-coupling Redfield-like equations for the high-frequency bath degrees of freedom only, while the low-frequency bath modes are dynamically arrested but statistically sampled. We examine the improvements afforded by this approximation by comparing with exact results for the spin-boson model over a wide range of parameter space. We further generalize the method to multi-site models and compare with exact results for a model of the Fenna–Matthews–Olson complex. The results from the method are found to dramatically improve Redfield dynamics in highly non-Markovian regimes, at a similar computational cost. Relaxation of the mode-freezing approximation via classical (Ehrenfest) evolution of the low-frequency modes results in a dynamical hybrid method. We find that this Redfield-based dynamical hybrid approach, which is computationally more expensive than bare Redfield dynamics, yields only a marginal improvement over the simpler approximation of complete mode arrest.

  5. Non-Markovian coarse-grained modeling of polymeric fluids based on the Mori-Zwanzig formalism

    NASA Astrophysics Data System (ADS)

    Li, Zhen; Bian, Xin; Li, Xiantao; Karniadakis, George

    The Mori-Zwanzig formalism for coarse-graining a complex dynamical system typically introduces memory effects. The Markovian assumption of delta-correlated fluctuating forces is often employed to simplify the formulation of coarse-grained (CG) models and numerical implementations. However, when the time scales of a system are not clearly separated, the memory effects become strong and the Markovian assumption becomes inaccurate. To this end, we incorporate memory effects into CG modeling by preserving non-Markovian interactions between CG variables based on the Mori-Zwanzig formalism. For a specific example, molecular dynamics (MD) simulations of star polymer melts are performed while the corresponding CG system is defined by grouping many bonded atoms into single clusters. Then, the effective interactions between CG clusters as well as the memory kernel are obtained from the MD simulations. The constructed CG force field with a memory kernel leads to a non-Markovian dissipative particle dynamics (NM-DPD). Quantitative comparisons on both static and dynamic properties between the CG models with Markovian and non-Markovian approximations will be presented. Supported by the DOE Center on Mathematics for Mesoscopic Modeling of Materials (CM4) and an INCITE grant.

  6. Non-Markovian barotropic-type and Hall-type fluctuation relations in crossed electric and magnetic fields

    NASA Astrophysics Data System (ADS)

    Jiménez-Aquino, J. I.; Romero-Bastida, M.

    2016-09-01

    In this paper we derive the non-Markovian barotropic-type and Hall-type fluctuation relations for noninteracting charged Brownian particles embedded in a memory heat bath and under the action of crossed electric and magnetic fields. We first obtain a more general non-Markovian fluctuation relation formulated within the context of a generalized Langevin equation with arbitrary friction memory kernel and under the action of a constant magnetic field and an arbitrary time-dependent electric field. It is shown that this fluctuation relation is related to the total amount of an effective work done on the charged particle as it is driven out of equilibrium by the applied time-dependent electric field. Both non-Markovian barotropic- and Hall-type fluctuation relations are then derived when the electric field is assumed to be also a constant vector pointing along just one axis. In the Markovian limit, we show explicitly that they reduce to the same results reported in the literature.

  7. Non-Markovian barotropic-type and Hall-type fluctuation relations in crossed electric and magnetic fields.

    PubMed

    Jiménez-Aquino, J I; Romero-Bastida, M

    2016-09-01

    In this paper we derive the non-Markovian barotropic-type and Hall-type fluctuation relations for noninteracting charged Brownian particles embedded in a memory heat bath and under the action of crossed electric and magnetic fields. We first obtain a more general non-Markovian fluctuation relation formulated within the context of a generalized Langevin equation with arbitrary friction memory kernel and under the action of a constant magnetic field and an arbitrary time-dependent electric field. It is shown that this fluctuation relation is related to the total amount of an effective work done on the charged particle as it is driven out of equilibrium by the applied time-dependent electric field. Both non-Markovian barotropic- and Hall-type fluctuation relations are then derived when the electric field is assumed to be also a constant vector pointing along just one axis. In the Markovian limit, we show explicitly that they reduce to the same results reported in the literature.

  8. Stochastic thermodynamics of a tagged particle within a harmonic chain.

    PubMed

    Lacoste, David; Lomholt, Michael A

    2015-02-01

    We study the stochastic thermodynamics of an overdamped harmonic chain, which can be viewed equivalently as a one-dimensional Rouse chain or as an approximate model of single file diffusion. We discuss mainly two levels of description of this system: the Markovian level for which the trajectories of all the particles of the chain are known and the non-Markovian level in which only the motion of a tagged particle is available. For each case, we analyze the energy dissipation and its dependence on initial conditions. Surprisingly, we find that the average coarse-grained entropy production rate can become transiently negative when an oscillating force is applied to the tagged particle. This occurs due to memory effects as shown in a framework based on path integrals or on a generalized Langevin equation.

  9. Mathematical Descriptions of Biochemical Networks: Stability, Stochasticity, Evolution

    PubMed Central

    Rosenfeld, Simon

    2011-01-01

    In this paper, we review some fundamental aspects, as well as some new developments, in the emerging field of network biology. The focus of attention is placed on mathematical approaches to conceptual modeling of biomolecular networks with special emphasis on dynamic stability, stochasticity and evolution. PMID:21419158

  10. Quantum heat current under non-perturbative and non-Markovian conditions: Applications to heat machines.

    PubMed

    Kato, Akihito; Tanimura, Yoshitaka

    2016-12-14

    We consider a quantum system strongly coupled to multiple heat baths at different temperatures. Quantum heat transport phenomena in this system are investigated using two definitions of the heat current: one in terms of the system energy and the other in terms of the bath energy. When we consider correlations among system-bath interactions (CASBIs)-which have a purely quantum mechanical origin-the definition in terms of the bath energy becomes different. We found that CASBIs are necessary to maintain the consistency of the heat current with thermodynamic laws in the case of strong system-bath coupling. However, within the context of the quantum master equation approach, both of these definitions are identical. Through a numerical investigation, we demonstrate this point for a non-equilibrium spin-boson model and a three-level heat engine model using the reduced hierarchal equations of motion approach under the strongly coupled and non-Markovian conditions. We observe the cyclic behavior of the heat currents and the work performed by the heat engine, and we find that their phases depend on the system-bath coupling strength. Through consideration of the bath heat current, we show that the efficiency of the heat engine decreases as the strength of the system-bath coupling increases, due to the CASBI contribution. In the case of a large system-bath coupling, the efficiency decreases further if the bath temperature is increased, even if the ratio of the bath temperatures is fixed, due to the discretized nature of energy eigenstates. This is also considered to be a unique feature of quantum heat engines.

  11. Quantum heat current under non-perturbative and non-Markovian conditions: Applications to heat machines

    NASA Astrophysics Data System (ADS)

    Kato, Akihito; Tanimura, Yoshitaka

    2016-12-01

    We consider a quantum system strongly coupled to multiple heat baths at different temperatures. Quantum heat transport phenomena in this system are investigated using two definitions of the heat current: one in terms of the system energy and the other in terms of the bath energy. When we consider correlations among system-bath interactions (CASBIs)—which have a purely quantum mechanical origin—the definition in terms of the bath energy becomes different. We found that CASBIs are necessary to maintain the consistency of the heat current with thermodynamic laws in the case of strong system-bath coupling. However, within the context of the quantum master equation approach, both of these definitions are identical. Through a numerical investigation, we demonstrate this point for a non-equilibrium spin-boson model and a three-level heat engine model using the reduced hierarchal equations of motion approach under the strongly coupled and non-Markovian conditions. We observe the cyclic behavior of the heat currents and the work performed by the heat engine, and we find that their phases depend on the system-bath coupling strength. Through consideration of the bath heat current, we show that the efficiency of the heat engine decreases as the strength of the system-bath coupling increases, due to the CASBI contribution. In the case of a large system-bath coupling, the efficiency decreases further if the bath temperature is increased, even if the ratio of the bath temperatures is fixed, due to the discretized nature of energy eigenstates. This is also considered to be a unique feature of quantum heat engines.

  12. Non-Markovian closure models for large eddy simulations using the Mori-Zwanzig formalism

    NASA Astrophysics Data System (ADS)

    Parish, Eric J.; Duraisamy, Karthik

    2017-01-01

    This work uses the Mori-Zwanzig (M-Z) formalism, a concept originating from nonequilibrium statistical mechanics, as a basis for the development of coarse-grained models of turbulence. The mechanics of the generalized Langevin equation (GLE) are considered, and insight gained from the orthogonal dynamics equation is used as a starting point for model development. A class of subgrid models is considered which represent nonlocal behavior via a finite memory approximation [Stinis, arXiv:1211.4285 (2012)], the length of which is determined using a heuristic that is related to the spectral radius of the Jacobian of the resolved variables. The resulting models are intimately tied to the underlying numerical resolution and are capable of approximating non-Markovian effects. Numerical experiments on the Burgers equation demonstrate that the M-Z-based models can accurately predict the temporal evolution of the total kinetic energy and the total dissipation rate at varying mesh resolutions. The trajectory of each resolved mode in phase space is accurately predicted for cases where the coarse graining is moderate. Large eddy simulations (LESs) of homogeneous isotropic turbulence and the Taylor-Green Vortex show that the M-Z-based models are able to provide excellent predictions, accurately capturing the subgrid contribution to energy transfer. Last, LESs of fully developed channel flow demonstrate the applicability of M-Z-based models to nondecaying problems. It is notable that the form of the closure is not imposed by the modeler, but is rather derived from the mathematics of the coarse graining, highlighting the potential of M-Z-based techniques to define LES closures.

  13. Computing the non-Markovian coarse-grained interactions derived from the Mori-Zwanzig formalism in molecular systems: Application to polymer melts.

    PubMed

    Li, Zhen; Lee, Hee Sun; Darve, Eric; Karniadakis, George Em

    2017-01-07

    Memory effects are often introduced during coarse-graining of a complex dynamical system. In particular, a generalized Langevin equation (GLE) for the coarse-grained (CG) system arises in the context of Mori-Zwanzig formalism. Upon a pairwise decomposition, GLE can be reformulated into its pairwise version, i.e., non-Markovian dissipative particle dynamics (DPD). GLE models the dynamics of a single coarse particle, while DPD considers the dynamics of many interacting CG particles, with both CG systems governed by non-Markovian interactions. We compare two different methods for the practical implementation of the non-Markovian interactions in GLE and DPD systems. More specifically, a direct evaluation of the non-Markovian (NM) terms is performed in LE-NM and DPD-NM models, which requires the storage of historical information that significantly increases computational complexity. Alternatively, we use a few auxiliary variables in LE-AUX and DPD-AUX models to replace the non-Markovian dynamics with a Markovian dynamics in a higher dimensional space, leading to a much reduced memory footprint and computational cost. In our numerical benchmarks, the GLE and non-Markovian DPD models are constructed from molecular dynamics (MD) simulations of star-polymer melts. Results show that a Markovian dynamics with auxiliary variables successfully generates equivalent non-Markovian dynamics consistent with the reference MD system, while maintaining a tractable computational cost. Also, transient subdiffusion of the star-polymers observed in the MD system can be reproduced by the coarse-grained models. The non-interacting particle models, LE-NM/AUX, are computationally much cheaper than the interacting particle models, DPD-NM/AUX. However, the pairwise models with momentum conservation are more appropriate for correctly reproducing the long-time hydrodynamics characterised by an algebraic decay in the velocity autocorrelation function.

  14. Modeling the nanoscale viscoelasticity of fluids by bridging non-Markovian fluctuating hydrodynamics and molecular dynamics simulations

    NASA Astrophysics Data System (ADS)

    Voulgarakis, Nikolaos K.; Satish, Siddarth; Chu, Jhih-Wei

    2009-12-01

    A multiscale computational method is developed to model the nanoscale viscoelasticity of fluids by bridging non-Markovian fluctuating hydrodynamics (FHD) and molecular dynamics (MD) simulations. To capture the elastic responses that emerge at small length scales, we attach an additional rheological model parallel to the macroscopic constitutive equation of a fluid. The widely used linear Maxwell model is employed as a working choice; other models can be used as well. For a fluid that is Newtonian in the macroscopic limit, this approach results in a parallel Newtonian-Maxwell model. For water, argon, and an ionic liquid, the power spectrum of momentum field autocorrelation functions of the parallel Newtonian-Maxwell model agrees very well with those calculated from all-atom MD simulations. To incorporate thermal fluctuations, we generalize the equations of FHD to work with non-Markovian rheological models and colored noise. The fluctuating stress tensor (white noise) is integrated in time in the same manner as its dissipative counterpart and numerical simulations indicate that this approach accurately preserves the set temperature in a FHD simulation. By mapping position and velocity vectors in the molecular representation onto field variables, we bridge the non-Markovian FHD with atomistic MD simulations. Through this mapping, we quantitatively determine the transport coefficients of the parallel Newtonian-Maxwell model for water and argon from all-atom MD simulations. For both fluids, a significant enhancement in elastic responses is observed as the wave number of hydrodynamic modes is reduced to a few nanometers. The mapping from particle to field representations and the perturbative strategy of developing constitutive equations provide a useful framework for modeling the nanoscale viscoelasticity of fluids.

  15. Work and heat for two-level systems in dissipative environments: Strong driving and non-Markovian dynamics

    NASA Astrophysics Data System (ADS)

    Schmidt, R.; Carusela, M. F.; Pekola, J. P.; Suomela, S.; Ankerhold, J.

    2015-06-01

    Work, moments of work, and heat flux are studied for the generic case of a strongly driven two-level system immersed in a bosonic heat bath in domains of parameter space where perturbative treatments fail. This includes in particular the interplay between non-Markovian dynamics and moderate to strong external driving. Exact data are compared with predictions from weak-coupling approaches. Further, the role of system-bath correlations in the initial thermal state and their impact on the heat flux are addressed. The relevance of these results for current experimental activities on solid-state devices is discussed.

  16. Excitation energy transfer efficiency: Equivalence of transient and stationary setting and the absence of non-Markovian effects

    SciTech Connect

    Jesenko, Simon; Znidaric, Marko

    2013-05-07

    We analyze efficiency of excitation energy transfer in photosynthetic complexes in transient and stationary setting. In the transient setting, the absorption process is modeled as an individual event resulting in a subsequent relaxation dynamics. In the stationary setting the absorption is a continuous stationary process, leading to the nonequilibrium steady state. We show that, as far as the efficiency is concerned, both settings can be considered to be the same, as they result in almost identical efficiency. We also show that non-Markovianity has no effect on the resulting efficiency, i.e., corresponding Markovian dynamics results in identical efficiency. Even more, if one maps dynamics to appropriate classical rate equations, the same efficiency as in quantum case is obtained.

  17. Generalized Master Equation with Non-Markovian Multichromophoric Förster Resonance Energy Transfer for Modular Exciton Densities

    NASA Astrophysics Data System (ADS)

    Jang, Seogjoo; Hoyer, Stephan; Fleming, Graham; Whaley, K. Birgitta

    2014-10-01

    A generalized master equation (GME) governing quantum evolution of modular exciton density (MED) is derived for large scale light harvesting systems composed of weakly interacting modules of multiple chromophores. The GME-MED offers a practical framework to incorporate real time coherent quantum dynamics calculations of small length scales into dynamics over large length scales, and also provides a non-Markovian generalization and rigorous derivation of the Pauli master equation employing multichromophoric Förster resonance energy transfer rates. A test of the GME-MED for four sites of the Fenna-Matthews-Olson complex demonstrates how coherent dynamics of excitonic populations over coupled chromophores can be accurately described by transitions between subgroups (modules) of delocalized excitons. Application of the GME-MED to the exciton dynamics between a pair of light harvesting complexes in purple bacteria demonstrates its promise as a computationally efficient tool to investigate large scale exciton dynamics in complex environments.

  18. Derivation of exact master equation with stochastic description: dissipative harmonic oscillator.

    PubMed

    Li, Haifeng; Shao, Jiushu; Wang, Shikuan

    2011-11-01

    A systematic procedure for deriving the master equation of a dissipative system is reported in the framework of stochastic description. For the Caldeira-Leggett model of the harmonic-oscillator bath, a detailed and elementary derivation of the bath-induced stochastic field is presented. The dynamics of the system is thereby fully described by a stochastic differential equation, and the desired master equation would be acquired with statistical averaging. It is shown that the existence of a closed-form master equation depends on the specificity of the system as well as the feature of the dissipation characterized by the spectral density function. For a dissipative harmonic oscillator it is observed that the correlation between the stochastic field due to the bath and the system can be decoupled, and the master equation naturally results. Such an equation possesses the Lindblad form in which time-dependent coefficients are determined by a set of integral equations. It is proved that the obtained master equation is equivalent to the well-known Hu-Paz-Zhang equation based on the path-integral technique. The procedure is also used to obtain the master equation of a dissipative harmonic oscillator in time-dependent fields.

  19. Collisional Line Mixing in Parallel and Perpendicular Bands of Linear Molecules by a Non-Markovian Approach

    NASA Astrophysics Data System (ADS)

    Buldyreva, Jeanna

    2013-06-01

    Reliable modeling of radiative transfer in planetary atmospheres requires accounting for the collisional line mixing effects in the regions of closely spaced vibrotational lines as well as in the spectral wings. Because of too high CPU cost of calculations from ab initio potential energy surfaces (if available), the relaxation matrix describing the influence of collisions is usually built by dynamical scaling laws, such as Energy-Corrected Sudden law. Theoretical approaches currently used for calculation of absorption near the band center are based on the impact approximation (Markovian collisions without memory effects) and wings are modeled via introducing some empirical parameters [1,2]. Operating with the traditional non-symmetric metric in the Liouville space, these approaches need corrections of the ECS-modeled relaxation matrix elements ("relaxation times" and "renormalization procedure") in order to ensure the fundamental relations of detailed balance and sum rules.We present an extension to the infrared absorption case of the previously developed [3] for rototranslational Raman scattering spectra of linear molecules non-Markovian approach of ECS-type. Owing to the specific choice of symmetrized metric in the Liouville space, the relaxation matrix is corrected for initial bath-molecule correlations and satisfies non-Markovian sum rules and detailed balance. A few standard ECS parameters determined by fitting to experimental linewidths of the isotropic Q-branch enable i) retrieval of these isolated-line parameters for other spectroscopies (IR absorption and anisotropic Raman scattering); ii) reproducing of experimental intensities of these spectra. Besides including vibrational angular momenta in the IR bending shapes, Coriolis effects are also accounted for. The efficiency of the method is demonstrated on OCS-He and CO_2-CO_2 spectra up to 300 and 60 atm, respectively. F. Niro, C. Boulet, and J.-M. Hartmann, J. Quant. Spectrosc. Radiat. Transf. 88, 483

  20. Stochastic semi-classical description of fusion at near-barrier energies

    SciTech Connect

    Ayik, Sakir; Yilmaz, Bulent

    2010-03-15

    Fusion reactions of heavy ions are investigated by employing a simple stochastic semi-classical model, which includes coupling between the relative motion and low frequency collective surface modes of colliding ions similarly to the quantal coupled-channels description. The quantal effect enters into the calculation through the initial zero-point fluctuations of the surface vibrations. A good agreement with results of coupled-channels calculations as well as experimental data is obtained for fusion cross sections of Ni isotopes. The internal excitations in nonfusing events as well as the fusion time are investigated.

  1. Elephants can always remember: Exact long-range memory effects in a non-Markovian random walk

    NASA Astrophysics Data System (ADS)

    Schütz, Gunter M.; Trimper, Steffen

    2004-10-01

    We consider a discrete-time random walk where the random increment at time step t depends on the full history of the process. We calculate exactly the mean and variance of the position and discuss its dependence on the initial condition and on the memory parameter p . At a critical value pc(1)=1/2 where memory effects vanish there is a transition from a weakly localized regime [where the walker (elephant) returns to its starting point] to an escape regime. Inside the escape regime there is a second critical value where the random walk becomes superdiffusive. The probability distribution is shown to be governed by a non-Markovian Fokker-Planck equation with hopping rates that depend both on time and on the starting position of the walk. On large scales the memory organizes itself into an effective harmonic oscillator potential for the random walker with a time-dependent spring constant k=(2p-1)/t . The solution of this problem is a Gaussian distribution with time-dependent mean and variance which both depend on the initiation of the process.

  2. Polymer length distributions for catalytic polymerization within mesoporous materials: Non-Markovian behavior associated with partial extrusion

    NASA Astrophysics Data System (ADS)

    Liu, Da-Jiang; Chen, Hung-Ting; Lin, Victor S.-Y.; Evans, J. W.

    2010-04-01

    We analyze a model for polymerization at catalytic sites distributed within parallel linear pores of a mesoporous material. Polymerization occurs primarily by reaction of monomers diffusing into the pores with the ends of polymers near the pore openings. Monomers and polymers undergo single-file diffusion within the pores. Model behavior, including the polymer length distribution, is determined by kinetic Monte Carlo simulation of a suitable atomistic-level lattice model. While the polymers remain within the pore, their length distribution during growth can be described qualitatively by a Markovian rate equation treatment. However, once they become partially extruded, the distribution is shown to exhibit non-Markovian scaling behavior. This feature is attributed to the long-tail in the "return-time distribution" for the protruding end of the partially extruded polymer to return to the pore, such return being necessary for further reaction and growth. The detailed form of the scaled length distribution is elucidated by application of continuous-time random walk theory.

  3. Polymer length distributions for catalytic polymerization within mesoporous materials: non-Markovian behavior associated with partial extrusion.

    PubMed

    Liu, Da-Jiang; Chen, Hung-Ting; Lin, Victor S-Y; Evans, J W

    2010-04-21

    We analyze a model for polymerization at catalytic sites distributed within parallel linear pores of a mesoporous material. Polymerization occurs primarily by reaction of monomers diffusing into the pores with the ends of polymers near the pore openings. Monomers and polymers undergo single-file diffusion within the pores. Model behavior, including the polymer length distribution, is determined by kinetic Monte Carlo simulation of a suitable atomistic-level lattice model. While the polymers remain within the pore, their length distribution during growth can be described qualitatively by a Markovian rate equation treatment. However, once they become partially extruded, the distribution is shown to exhibit non-Markovian scaling behavior. This feature is attributed to the long-tail in the "return-time distribution" for the protruding end of the partially extruded polymer to return to the pore, such return being necessary for further reaction and growth. The detailed form of the scaled length distribution is elucidated by application of continuous-time random walk theory.

  4. Nonequilibrium thermodynamics in the strong coupling and non-Markovian regime based on a reaction coordinate mapping

    NASA Astrophysics Data System (ADS)

    Strasberg, Philipp; Schaller, Gernot; Lambert, Neill; Brandes, Tobias

    2016-07-01

    We propose a method to study the thermodynamic behaviour of small systems beyond the weak coupling and Markovian approximation, which is different in spirit from conventional approaches. The idea is to redefine the system and environment such that the effective, redefined system is again coupled weakly to Markovian residual baths and thus, allows to derive a consistent thermodynamic framework for this new system-environment partition. To achieve this goal we make use of the reaction coordinate (RC) mapping, which is a general method in the sense that it can be applied to an arbitrary (quantum or classical and even time-dependent) system coupled linearly to an arbitrary number of harmonic oscillator reservoirs. The core of the method relies on an appropriate identification of a part of the environment (the RC), which is subsequently included as a part of the system. We demonstrate the power of this concept by showing that non-Markovian effects can significantly enhance the steady state efficiency of a three-level-maser heat engine, even in the regime of weak system-bath coupling. Furthermore, we show for a single electron transistor coupled to vibrations that our method allows one to justify master equations derived in a polaron transformed reference frame.

  5. Description of light nuclei in pionless effective field theory using the stochastic variational method

    NASA Astrophysics Data System (ADS)

    Lensky, Vadim; Birse, Michael C.; Walet, Niels R.

    2016-09-01

    We construct a coordinate-space potential based on pionless effective field theory (EFT) with a Gaussian regulator. Charge-symmetry breaking is included through the Coulomb potential and through two- and three-body contact interactions. Starting with the effective field theory potential, we apply the stochastic variational method to determine the ground states of nuclei with mass number A ≤4 . At next-to-next-to-leading order, two out of three independent three-body parameters can be fitted to the three-body binding energies. To fix the remaining one, we look for a simultaneous description of the binding energy of 4He and the charge radii of 3He and 4He. We show that at the order considered we can find an acceptable solution, within the uncertainty of the expansion. We find that the EFT expansion shows good agreement with empirical data within the estimated uncertainty, even for a system as dense as 4He.

  6. Theory of frequency and phase synchronization in a rocked bistable stochastic system.

    PubMed

    Casado-Pascual, Jesús; Gómez-Ordóñez, José; Morillo, Manuel; Lehmann, Jörg; Goychuk, Igor; Hänggi, Peter

    2005-01-01

    We investigate the role of noise in the phenomenon of stochastic synchronization of switching events in a rocked, overdamped bistable potential driven by white Gaussian noise, the archetype description of stochastic resonance. We present an approach to the stochastic counting process of noise-induced switching events: starting from the Markovian dynamics of the nonstationary, continuous particle dynamics, one finds upon contraction onto two states a non-Markovian renewal dynamics. A proper definition of an output discrete phase is given, and the time rate of change of its noise average determines the corresponding output frequency. The phenomenon of noise-assisted phase synchronization is investigated in terms of an effective, instantaneous phase diffusion. The theory is applied to rectangular-shaped rocking signals versus increasing input-noise strengths. In this case, for an appropriate choice of the parameter values, the system exhibits a noise-induced frequency locking accompanied by a very pronounced suppression of the phase diffusion of the output signal. Precise numerical simulations corroborate very favorably our analytical results. The novel theoretical findings are also compared with prior ones.

  7. A simple non-Markovian computational model of the statistics of soccer leagues: Emergence and scaling effects

    NASA Astrophysics Data System (ADS)

    da Silva, Roberto; Vainstein, Mendeli H.; Lamb, Luis C.; Prado, Sandra D.

    2013-03-01

    We propose a novel probabilistic model that outputs the final standings of a soccer league, based on a simple dynamics that mimics a soccer tournament. In our model, a team is created with a defined potential (ability) which is updated during the tournament according to the results of previous games. The updated potential modifies a team future winning/losing probabilities. We show that this evolutionary game is able to reproduce the statistical properties of final standings of actual editions of the Brazilian tournament (Brasileirão) if the starting potential is the same for all teams. Other leagues such as the Italian (Calcio) and the Spanish (La Liga) tournaments have notoriously non-Gaussian traces and cannot be straightforwardly reproduced by this evolutionary non-Markovian model with simple initial conditions. However, we show that by setting the initial abilities based on data from previous tournaments, our model is able to capture the stylized statistical features of double round robin system (DRRS) tournaments in general. A complete understanding of these phenomena deserves much more attention, but we suggest a simple explanation based on data collected in Brazil: here several teams have been crowned champion in previous editions corroborating that the champion typically emerges from random fluctuations that partly preserve the Gaussian traces during the tournament. On the other hand, in the Italian and Spanish cases, only a few teams in recent history have won their league tournaments. These leagues are based on more robust and hierarchical structures established even before the beginning of the tournament. For the sake of completeness, we also elaborate a totally Gaussian model (which equalizes the winning, drawing, and losing probabilities) and we show that the scores of the Brazilian tournament “Brasileirão” cannot be reproduced. This shows that the evolutionary aspects are not superfluous and play an important role which must be considered in

  8. Fokker-Planck Kinetic Description of Small-scale Fluid Turbulence for Classical Incompressible Fluids§

    NASA Astrophysics Data System (ADS)

    Tessarotto, M.; Ellero, M.; Sarmah, D.; Nicolini, P.

    2008-12-01

    Extending the statistical approach proposed in a parallel paper [1], purpose of this work is to propose a stochastic inverse kinetic theory for small-scale hydrodynamic turbulence based on the introduction of a suitable local phase-space probability density function (pdf). In particular, we pose the problem of the construction of Fokker-Planck kinetic models of hydrodynamic turbulence. The approach here adopted is based on the so-called IKT approach (inverse kinetic theory), developed by Tessarotto et al. (2004-2008) which permits an exact phase-space description of incompressible fluids based on the adoption of a local pdf. We intend to show that for prescribed models of stochasticity the present approach permits to determine uniquely the time evolution of the stochastic fluid fields. The stochastic-averaged local pdf is shown to obey a kinetic equation which, although generally non-Markovian, locally in velocity-space can be approximated by means of a suitable Fokker-planck kinetic equation. As a side result, the same pdf is proven to have generally a non-Gaussian behavior.

  9. Volatile decision dynamics: experiments, stochastic description, intermittency control and traffic optimization

    NASA Astrophysics Data System (ADS)

    Helbing, Dirk; Schönhof, Martin; Kern, Daniel

    2002-06-01

    The coordinated and efficient distribution of limited resources by individual decisions is a fundamental, unsolved problem. When individuals compete for road capacities, time, space, money, goods, etc, they normally make decisions based on aggregate rather than complete information, such as TV news or stock market indices. In related experiments, we have observed a volatile decision dynamics and far-from-optimal payoff distributions. We have also identified methods of information presentation that can considerably improve the overall performance of the system. In order to determine optimal strategies of decision guidance by means of user-specific recommendations, a stochastic behavioural description is developed. These strategies manage to increase the adaptibility to changing conditions and to reduce the deviation from the time-dependent user equilibrium, thereby enhancing the average and individual payoffs. Hence, our guidance strategies can increase the performance of all users by reducing overreaction and stabilizing the decision dynamics. These results are highly significant for predicting decision behaviour, for reaching optimal behavioural distributions by decision support systems and for information service providers. One of the promising fields of application is traffic optimization.

  10. Nonequilibrium quantum transport coefficients and transient dynamics of full counting statistics in the strong-coupling and non-Markovian regimes

    NASA Astrophysics Data System (ADS)

    Cerrillo, Javier; Buser, Maximilian; Brandes, Tobias

    2016-12-01

    Nonequilibrium transport properties of quantum systems have recently become experimentally accessible in a number of platforms in so-called full-counting experiments that measure transient and steady-state nonequilibrium transport dynamics. We show that the effect of the measurement back-action can be exploited to establish general relationships between transport coefficients in the transient regime which take the form of fluctuation-dissipation theorems in the steady state. This result becomes most conspicuous in the transient dynamics of open quantum systems under strong-coupling to non-Markovian environments in nonequilibrium settings. In order to explore this regime, a new simulation method based in a hierarchy of equations of motion has been developed. We instantiate our proposal with the study of energetic conductance between two baths connected via a few level system.

  11. Non-Markovian dynamics of single- and two-qubit systems interacting with Gaussian and non-Gaussian fluctuating transverse environments

    SciTech Connect

    Rossi, Matteo A. C.; Paris, Matteo G. A.

    2016-01-14

    We address the interaction of single- and two-qubit systems with an external transverse fluctuating field and analyze in detail the dynamical decoherence induced by Gaussian noise and random telegraph noise (RTN). Upon exploiting the exact RTN solution of the time-dependent von Neumann equation, we analyze in detail the behavior of quantum correlations and prove the non-Markovianity of the dynamical map in the full parameter range, i.e., for either fast or slow noise. The dynamics induced by Gaussian noise is studied numerically and compared to the RTN solution, showing the existence of (state dependent) regions of the parameter space where the two noises lead to very similar dynamics. We show that the effects of RTN noise and of Gaussian noise are different, i.e., the spectrum alone is not enough to summarize the noise effects, but the dynamics under the effect of one kind of noise may be simulated with high fidelity by the other one.

  12. Stochastic description of salt-marsh inundation from mixed astronomical-wind driven tides, with implications for macrophyte growth

    NASA Astrophysics Data System (ADS)

    Howell, S. M.; Furbish, D. J.; Morris, J. T.

    2009-12-01

    Sea-level rise and sedimentation interact to control productivity on coastal salt marshes since the mean sea level influences flood frequency. Irregularly flooded marshes are inundated during spring and storm tides and during extended periods of north-easterly winds. The weak and irregular inundation in marshes may effect rates of decomposition, organic matter accumulation, and the vertical distribution of marsh vegetation. Whereas astronomical tides are predictable, wind driven tides depend on the strength and direction of the wind. Because these systems are stochastic, a non-hydrodynamic approach is used to describe the tides and determine the distribution of water depths. Here we present a description of salt-marsh inundation from mixed astronomical-wind driven tides that removes the astronomical forcing from water level records to determine the role of wind, storms, and forecasting of stochastic platform wetting. Using a 3 year record of water level and wind from sites in Carteret County, North Carolina, we calculate the mean high water (MHW) level and the ratio of inundation for a given elevation and corresponding macrophyte. The frequency of inundation or marsh platform wetting will vary from the frequency of MHW level, yet it is this stochastic wetting process that determines productivity and plant distribution since infrequent flooding may cause stress or hypersaline conditions. An ARIMA model is used to describe this higher order structure of the inundation signal. Wind can be described as an AR1 and a transfer function model is used to determine the dynamic response of the effect of noise and sustained winds on water levels. Harmonic analysis is also performed for comparison of predicted water levels using various tidal constituents to determine the phases and amplitudes and to explore model simplification.

  13. Hierarchy of Stochastic Pure States for Open Quantum System Dynamics

    NASA Astrophysics Data System (ADS)

    Suess, D.; Eisfeld, A.; Strunz, W. T.

    2014-10-01

    We derive a hierarchy of stochastic evolution equations for pure states (quantum trajectories) for open quantum system dynamics with non-Markovian structured environments. This hierarchy of pure states (HOPS) is generally applicable and provides the exact reduced density operator as an ensemble average over normalized states. The corresponding nonlinear equations are presented. We demonstrate that HOPS provides an efficient theoretical tool and apply it to the spin-boson model, the calculation of absorption spectra of molecular aggregates, and energy transfer in a photosynthetic pigment-protein complex.

  14. Probabilistic description of crop development and irrigation water requirements with stochastic rainfall

    NASA Astrophysics Data System (ADS)

    Vico, Giulia; Porporato, Amilcare

    2013-03-01

    Supplemental irrigation represents one of the main strategies to mitigate the effects of climatic variability on agroecosystems, stabilizing yields and profits. Because of the significant investments and water requirements associated with irrigation, strategic choices are needed to preserve productivity and profitability while ensuring a sustainable water management, a nontrivial task given rainfall unpredictability. Decision-making under uncertainty requires the knowledge of the probability density function (pdf) of the outcome variable (yield and economic return) for the different management alternatives to be considered (here, irrigation strategies). A stochastic framework is proposed, linking probabilistically the occurrence of rainfall events and irrigation applications to crop development during the growing season. Based on these linkages, the pdf of yields and the corresponding irrigation requirements are obtained analytically as a function of climate, soil, and crop parameters, for different irrigation strategies and both unlimited and limited water availability. Approximate expressions are also presented to facilitate their application. Our results employ relatively few parameters and are thus broadly applicable to different crops and sites, under current- and future-climate scenarios, offering a quantitative tool to quantify the impact of irrigation strategies and water allocation on yields. As a tool for decision-making under uncertainty (e.g., via expected utility theory), our framework will be useful for the assessment of the feasibility of different irrigation strategies and water allocations, toward a sustainable management of water resources for human and environmental needs.

  15. Two-layer symbolic representation for stochastic models with phase-type distributed events

    NASA Astrophysics Data System (ADS)

    Longo, Francesco; Scarpa, Marco

    2015-07-01

    Among the techniques that have been proposed for the analysis of non-Markovian models, the state space expansion approach showed great flexibility in terms of modelling capacities.The principal drawback is the explosion of the state space. This paper proposes a two-layer symbolic method for efficiently storing the expanded reachability graph of a non-Markovian model in the case in which continuous phase-type distributions are associated with the firing times of system events, and different memory policies are considered. At the lower layer, the reachability graph is symbolically represented in the form of a set of Kronecker matrices, while, at the higher layer, all the information needed to correctly manage event memory is stored in a multi-terminal multi-valued decision diagram. Such an information is collected by applying a symbolic algorithm, which is based on a couple of theorems. The efficiency of the proposed approach, in terms of memory occupation and execution time, is shown by applying it to a set of non-Markovian stochastic Petri nets and comparing it with a classical explicit expansion algorithm. Moreover, a comparison with a classical symbolic approach is performed whenever possible.

  16. Non-markovian boltzmann equation

    SciTech Connect

    Kremp, D.; Bonitz, M.; Kraeft, W.D.; Schlanges, M.

    1997-08-01

    A quantum kinetic equation for strongly interacting particles (generalized binary collision approximation, ladder or T-matrix approximation) is derived in the framework of the density operator technique. In contrast to conventional kinetic theory, which is valid on large time scales as compared to the collision (correlation) time only, our approach retains the full time dependencies, especially also on short time scales. This means retardation and memory effects resulting from the dynamics of binary correlations and initial correlations are included. Furthermore, the resulting kinetic equation conserves total energy (the sum of kinetic and potential energy). The second aspect of generalization is the inclusion of many-body effects, such as self-energy, i.e., renormalization of single-particle energies and damping. To this end we introduce an improved closure relation to the Bogolyubov{endash}Born{endash}Green{endash}Kirkwood{endash}Yvon hierarchy. Furthermore, in order to express the collision integrals in terms of familiar scattering quantities (Mo/ller operator, T-matrix), we generalize the methods of quantum scattering theory by the inclusion of medium effects. To illustrate the effects of memory and damping, the results of numerical simulations are presented. {copyright} 1997 Academic Press, Inc.

  17. Stochastic processes with distributed delays: chemical Langevin equation and linear-noise approximation.

    PubMed

    Brett, Tobias; Galla, Tobias

    2013-06-21

    We develop a systematic approach to the linear-noise approximation for stochastic reaction systems with distributed delays. Unlike most existing work our formalism does not rely on a master equation; instead it is based upon a dynamical generating functional describing the probability measure over all possible paths of the dynamics. We derive general expressions for the chemical Langevin equation for a broad class of non-Markovian systems with distributed delay. Exemplars of a model of gene regulation with delayed autoinhibition and a model of epidemic spread with delayed recovery provide evidence of the applicability of our results.

  18. Stochastic Modeling of Decadal Variability in Ocean Gyres

    NASA Astrophysics Data System (ADS)

    Kondrashov, Dmitri; Berloff, Pavel

    2015-04-01

    Decadal large-scale low-frequency variability of the ocean circulation due to its nonlinear dynamics remains a big challenge for theoretical understanding and practical ocean modeling. This paper presents a novel fully data-driven approach that addresses this challenge. We propose non-Markovian low-order methodology with stochastic closure and data-adaptive mode decomposition. The multilayer stochastic linear model is obtained from the coarse-grained eddy-resolving ocean model solution, and it reproduces with high accuracy the main statistical properties of the decadal variability. The proposed methodology does not depend on the governing fluid dynamics equations and geometry of the problem, and it can be extended to other ocean models and ultimately to the real data.

  19. Stochastic modeling of decadal variability in ocean gyres

    NASA Astrophysics Data System (ADS)

    Kondrashov, D.; Berloff, P.

    2015-03-01

    Decadal large-scale low-frequency variability of the ocean circulation due to its nonlinear dynamics remains a big challenge for theoretical understanding and practical ocean modeling. This paper presents a novel fully data driven approach that addresses this challenge. Proposed is non-Markovian low-order methodology with stochastic closure and use of mode decomposition by multichannel Singular Spectrum Analysis. The multilayer stochastic linear model is obtained from the coarse-grained eddy-resolving ocean model solution, and with high accuracy it reproduces the main statistical properties of the decadal variability. The proposed methodology does not depend on the governing fluid dynamics equations and geometry of the problem, and it can be extended to other ocean models and ultimately to the real data.

  20. Stochastic Wilson-Cowan models of neuronal network dynamics with memory and delay

    NASA Astrophysics Data System (ADS)

    Goychuk, Igor; Goychuk, Andriy

    2015-04-01

    We consider a simple Markovian class of the stochastic Wilson-Cowan type models of neuronal network dynamics, which incorporates stochastic delay caused by the existence of a refractory period of neurons. From the point of view of the dynamics of the individual elements, we are dealing with a network of non-Markovian stochastic two-state oscillators with memory, which are coupled globally in a mean-field fashion. This interrelation of a higher-dimensional Markovian and lower-dimensional non-Markovian dynamics is discussed in its relevance to the general problem of the network dynamics of complex elements possessing memory. The simplest model of this class is provided by a three-state Markovian neuron with one refractory state, which causes firing delay with an exponentially decaying memory within the two-state reduced model. This basic model is used to study critical avalanche dynamics (the noise sustained criticality) in a balanced feedforward network consisting of the excitatory and inhibitory neurons. Such avalanches emerge due to the network size dependent noise (mesoscopic noise). Numerical simulations reveal an intermediate power law in the distribution of avalanche sizes with the critical exponent around -1.16. We show that this power law is robust upon a variation of the refractory time over several orders of magnitude. However, the avalanche time distribution is biexponential. It does not reflect any genuine power law dependence.

  1. Analysis of Phase-Type Stochastic Petri Nets With Discrete and Continuous Timing

    NASA Technical Reports Server (NTRS)

    Jones, Robert L.; Goode, Plesent W. (Technical Monitor)

    2000-01-01

    The Petri net formalism is useful in studying many discrete-state, discrete-event systems exhibiting concurrency, synchronization, and other complex behavior. As a bipartite graph, the net can conveniently capture salient aspects of the system. As a mathematical tool, the net can specify an analyzable state space. Indeed, one can reason about certain qualitative properties (from state occupancies) and how they arise (the sequence of events leading there). By introducing deterministic or random delays, the model is forced to sojourn in states some amount of time, giving rise to an underlying stochastic process, one that can be specified in a compact way and capable of providing quantitative, probabilistic measures. We formalize a new non-Markovian extension to the Petri net that captures both discrete and continuous timing in the same model. The approach affords efficient, stationary analysis in most cases and efficient transient analysis under certain restrictions. Moreover, this new formalism has the added benefit in modeling fidelity stemming from the simultaneous capture of discrete- and continuous-time events (as opposed to capturing only one and approximating the other). We show how the underlying stochastic process, which is non-Markovian, can be resolved into simpler Markovian problems that enjoy efficient solutions. Solution algorithms are provided that can be easily programmed.

  2. Kinetic and dynamic probability-density-function descriptions of disperse turbulent two-phase flows.

    PubMed

    Minier, Jean-Pierre; Profeta, Christophe

    2015-11-01

    This article analyzes the status of two classical one-particle probability density function (PDF) descriptions of the dynamics of discrete particles dispersed in turbulent flows. The first PDF formulation considers only the process made up by particle position and velocity Z(p)=(x(p),U(p)) and is represented by its PDF p(t; y(p),V(p)) which is the solution of a kinetic PDF equation obtained through a flux closure based on the Furutsu-Novikov theorem. The second PDF formulation includes fluid variables into the particle state vector, for example, the fluid velocity seen by particles Z(p)=(x(p),U(p),U(s)), and, consequently, handles an extended PDF p(t; y(p),V(p),V(s)) which is the solution of a dynamic PDF equation. For high-Reynolds-number fluid flows, a typical formulation of the latter category relies on a Langevin model for the trajectories of the fluid seen or, conversely, on a Fokker-Planck equation for the extended PDF. In the present work, a new derivation of the kinetic PDF equation is worked out and new physical expressions of the dispersion tensors entering the kinetic PDF equation are obtained by starting from the extended PDF and integrating over the fluid seen. This demonstrates that, under the same assumption of a Gaussian colored noise and irrespective of the specific stochastic model chosen for the fluid seen, the kinetic PDF description is the marginal of a dynamic PDF one. However, a detailed analysis reveals that kinetic PDF models of particle dynamics in turbulent flows described by statistical correlations constitute incomplete stand-alone PDF descriptions and, moreover, that present kinetic-PDF equations are mathematically ill posed. This is shown to be the consequence of the non-Markovian characteristic of the stochastic process retained to describe the system and the use of an external colored noise. Furthermore, developments bring out that well-posed PDF descriptions are essentially due to a proper choice of the variables selected to

  3. A stochastic response surface formulation for the description of acoustic propagation through an uncertain internal wave field.

    PubMed

    Gerdes, Frank; Finette, Steven

    2012-10-01

    A modeling and simulation study is performed in a littoral ocean waveguide subject to uncertainty in four quantities: source depth, tidal forcing, initial thermocline structure, and sediment sound speed. In this partially known shelf-break environment, tidal forcing over a density-stratified water column produces internal tides and solitary wave packets. The resulting uncertainty in the space-time oceanographic field is mapped into the sound speed distribution which, in turn, introduces uncertainty into the acoustic wave field. The latter is treated as a stochastic field whose intensity is described by a polynomial chaos expansion. The expansion coefficients are estimated through constrained multivariate linear regression, and an analysis of the chaos coefficients provides insight into the relative contribution of the uncertain acoustic and oceanographic quantities. Histograms of acoustic intensity are estimated and compared to a reference solution obtained through Latin Hypercube sampling. A sensitivity analysis is performed to illustrate the relative importance of the four contributions of incomplete information about the environment. The simulation methodology represents an end-to-end analysis approach including both oceanographic and acoustic field uncertainty where the latter is quantified using stochastic basis expansions in the form of a polynomial chaos representation.

  4. Generalized discord, entanglement, Einstein-Podolsky-Rosen steering, and Bell nonlocality in two-qubit systems under (non-)Markovian channels: Hierarchy of quantum resources and chronology of deaths and births

    NASA Astrophysics Data System (ADS)

    Costa, A. C. S.; Beims, M. W.; Angelo, R. M.

    2016-11-01

    Generalized quantum discord (Dq) , Einstein-Podolsky-Rosen steering (S) , entanglement (E) , and Bell nonlocality (N), are logically distinct quantifiers of quantum correlations. All these measures capture nonclassical aspects of quantum states and play some role as resources in quantum information processing. In this work, we look for the hierarchy satisfied by these quantum correlation witnesses for a class of two-qubit states. We show that N ⊳ S ⊳ E ⊳Dq, meaning that nonlocality implies steering, which in turn implies entanglement, which then implies q-discord. For the quantum states under concern, we show that the invariance of this hierarchy under noisy quantum channels directly implies a death chronology. Additionally, we have found that sudden death of all quantum resources except discord is absent only for a subset of states of measure zero. At last, we provide an illustration of another consequence of the aforementioned hierarchy, namely, the existence of a sudden birth chronology under non-Markovian channels.

  5. Stochastic methods for aerosol chemistry: a compact molecular description of functionalization and fragmentation in the heterogeneous oxidation of squalane aerosol by OH radicals.

    PubMed

    Wiegel, A A; Wilson, K R; Hinsberg, W D; Houle, F A

    2015-02-14

    The heterogeneous oxidation of organic aerosol by hydroxyl radicals (OH) can proceed through two general pathways: functionalization, in which oxygen functional groups are added to the carbon skeleton, and fragmentation, in which carbon-carbon bonds are broken, producing higher volatility, lower molecular weight products. An ongoing challenge is to develop a quantitative molecular description of these pathways that connects the oxidative evolution of the average aerosol properties (e.g. size and hygroscopicity) to the transformation of free radical intermediates. In order to investigate the underlying molecular mechanism of aerosol oxidation, a relatively compact kinetics model is developed for the heterogeneous oxidation of squalane particles by OH using free radical intermediates that convert reactive hydrogen sites into oxygen functional groups. Stochastic simulation techniques are used to compare calculated system properties over ten oxidation lifetimes with the same properties measured in experiment. The time-dependent average squalane aerosol mass, volume, density, carbon number distribution of scission products, and the average elemental composition are predicted using known rate coefficients. For functionalization, the calculations reveal that the distribution of alcohol and carbonyl groups is controlled primarily by the initial OH abstraction rate and to lesser extent by the branching ratio between secondary peroxy radical product channels. For fragmentation, the calculations reveal that the formation of activated alkoxy radicals with neighboring functional groups controls the molecular decomposition, particularly at high O/C ratios. This kinetic scheme provides a framework for understanding the oxidation chemistry of a model organic aerosol and informs parameterizations of more complex systems.

  6. High Resolution non-Markovianity in NMR

    PubMed Central

    Bernardes, Nadja K.; Peterson, John P. S.; Sarthour, Roberto S.; Souza, Alexandre M.; Monken, C. H.; Roditi, Itzhak; Oliveira, Ivan S.; Santos, Marcelo F.

    2016-01-01

    Memoryless time evolutions are ubiquitous in nature but often correspond to a resolution-induced approximation, i.e. there are correlations in time whose effects are undetectable. Recent advances in the dynamical control of small quantum systems provide the ideal scenario to probe some of these effects. Here we experimentally demonstrate the precise induction of memory effects on the evolution of a quantum coin (qubit) by correlations engineered in its environment. In particular, we design a collisional model in Nuclear Magnetic Resonance (NMR) and precisely control the strength of the effects by changing the degree of correlation in the environment and its time of interaction with the qubit. We also show how these effects can be hidden by the limited resolution of the measurements performed on the qubit. The experiment reinforces NMR as a test bed for the study of open quantum systems and the simulation of their classical counterparts. PMID:27669652

  7. Trajectory based non-markovian dissipative tunneling.

    PubMed

    Koch, Werner; Grossmann, Frank; Tannor, David J

    2010-12-03

    The influence of a dissipative environment on scattering of a particle by a barrier is investigated by using the recently introduced bohmian mechanics with complex action [J. Chem. Phys. 125, 231103 (2006)]. An extension of this complex trajectory based formalism to include the interaction of the tunneling particle with an environment of harmonic oscillators with a continuous spectral density and at a certain finite temperature allows us to calculate transmission probabilities beyond the weak system bath coupling regime. The results display an increasing tunneling probability for energies below the barrier and a decreased transmission above the barrier due to the coupling. Furthermore, we demonstrate that solutions of a markovian master equation fail to do so in general.

  8. Dynamics of non-Markovian exclusion processes

    NASA Astrophysics Data System (ADS)

    Khoromskaia, Diana; Harris, Rosemary J.; Grosskinsky, Stefan

    2014-12-01

    Driven diffusive systems are often used as simple discrete models of collective transport phenomena in physics, biology or social sciences. Restricting attention to one-dimensional geometries, the asymmetric simple exclusion process (ASEP) plays a paradigmatic role to describe noise-activated driven motion of entities subject to an excluded volume interaction and many variants have been studied in recent years. While in the standard ASEP the noise is Poissonian and the process is therefore Markovian, in many applications the statistics of the activating noise has a non-standard distribution with possible memory effects resulting from internal degrees of freedom or external sources. This leads to temporal correlations and can significantly affect the shape of the current-density relation as has been studied recently for a number of scenarios. In this paper we report a general framework to derive the fundamental diagram of ASEPs driven by non-Poissonian noise by using effectively only two simple quantities, viz., the mean residual lifetime of the jump distribution and a suitably defined temporal correlation length. We corroborate our results by detailed numerical studies for various noise statistics under periodic boundary conditions and discuss how our approach can be applied to more general driven diffusive systems.

  9. High Resolution non-Markovianity in NMR

    NASA Astrophysics Data System (ADS)

    Bernardes, Nadja K.; Peterson, John P. S.; Sarthour, Roberto S.; Souza, Alexandre M.; Monken, C. H.; Roditi, Itzhak; Oliveira, Ivan S.; Santos, Marcelo F.

    2016-09-01

    Memoryless time evolutions are ubiquitous in nature but often correspond to a resolution-induced approximation, i.e. there are correlations in time whose effects are undetectable. Recent advances in the dynamical control of small quantum systems provide the ideal scenario to probe some of these effects. Here we experimentally demonstrate the precise induction of memory effects on the evolution of a quantum coin (qubit) by correlations engineered in its environment. In particular, we design a collisional model in Nuclear Magnetic Resonance (NMR) and precisely control the strength of the effects by changing the degree of correlation in the environment and its time of interaction with the qubit. We also show how these effects can be hidden by the limited resolution of the measurements performed on the qubit. The experiment reinforces NMR as a test bed for the study of open quantum systems and the simulation of their classical counterparts.

  10. Gaussian approximations for stochastic systems with delay: Chemical Langevin equation and application to a Brusselator system

    SciTech Connect

    Brett, Tobias Galla, Tobias

    2014-03-28

    We present a heuristic derivation of Gaussian approximations for stochastic chemical reaction systems with distributed delay. In particular, we derive the corresponding chemical Langevin equation. Due to the non-Markovian character of the underlying dynamics, these equations are integro-differential equations, and the noise in the Gaussian approximation is coloured. Following on from the chemical Langevin equation, a further reduction leads to the linear-noise approximation. We apply the formalism to a delay variant of the celebrated Brusselator model, and show how it can be used to characterise noise-driven quasi-cycles, as well as noise-triggered spiking. We find surprisingly intricate dependence of the typical frequency of quasi-cycles on the delay period.

  11. Non-stochastic matrix Schrödinger equation for open systems

    NASA Astrophysics Data System (ADS)

    Joubert-Doriol, Loïc; Ryabinkin, Ilya G.; Izmaylov, Artur F.

    2014-12-01

    We propose an extension of the Schrödinger equation for a quantum system interacting with environment. This extension describes dynamics of a collection of auxiliary wavefunctions organized as a matrix m, from which the system density matrix can be reconstructed as hat{ρ }= {m} {m}^dagger. We formulate a compatibility condition, which ensures that the reconstructed density satisfies a given quantum master equation for the system density. The resulting non-stochastic evolution equation preserves positive-definiteness of the system density and is applicable to both Markovian and non-Markovian system-bath treatments. Our formalism also resolves a long-standing problem of energy loss in the time-dependent variational principle applied to mixed states of closed systems.

  12. Gaussian approximations for stochastic systems with delay: chemical Langevin equation and application to a Brusselator system.

    PubMed

    Brett, Tobias; Galla, Tobias

    2014-03-28

    We present a heuristic derivation of Gaussian approximations for stochastic chemical reaction systems with distributed delay. In particular, we derive the corresponding chemical Langevin equation. Due to the non-Markovian character of the underlying dynamics, these equations are integro-differential equations, and the noise in the Gaussian approximation is coloured. Following on from the chemical Langevin equation, a further reduction leads to the linear-noise approximation. We apply the formalism to a delay variant of the celebrated Brusselator model, and show how it can be used to characterise noise-driven quasi-cycles, as well as noise-triggered spiking. We find surprisingly intricate dependence of the typical frequency of quasi-cycles on the delay period.

  13. Effect of internal noise on the oscillation of N{sub 2}O decomposition over Cu-ZSM-5 zeolites using a stochastic description

    SciTech Connect

    Liu, Fuliang; Li, Yaping Sun, Xiaoming

    2014-01-28

    When considering stochastic oscillations of heterogeneous catalyst systems, most researches have focused on the surface of a metal or its oxide catalysts, but there have been few studies on porous catalysts. In this work, the effects of internal noise on oscillations of N{sub 2}O decomposition over Cu-ZSM-5 zeolites are investigated, using the chemical Langevin equation and a mesoscopic stochastic model. Considering that Cu-ZSM-5 particles are finely divided particles, the number of Cu ions (N{sub s}) is proportional to the particle size at a certain Cu/Al, and the internal noise is inversely proportional to N{sub s}. Stochastic oscillations can be observed outside the deterministic oscillatory region. Furthermore, the performance of the oscillation characterized by the signal-to-noise ratio has a maximum within the optimal size range of 4–8 nm. This suggests that a nanometer-sized zeolite may be best for oscillations.

  14. Stochastic quantum Zeno-based detection of noise correlations

    PubMed Central

    Müller, Matthias M.; Gherardini, Stefano; Caruso, Filippo

    2016-01-01

    A system under constant observation is practically freezed to the measurement subspace. If the system driving is a random classical field, the survival probability of the system in the subspace becomes a random variable described by the Stochastic Quantum Zeno Dynamics (SQZD) formalism. Here, we study the time and ensemble average of this random survival probability and demonstrate how time correlations in the noisy environment determine whether the two averages do coincide or not. These environment time correlations can potentially generate non-Markovian dynamics of the quantum system depending on the structure and energy scale of the system Hamiltonian. We thus propose a way to detect time correlations of the environment by coupling a quantum probe system to it and observing the survival probability of the quantum probe in a measurement subspace. This will further contribute to the development of new schemes for quantum sensing technologies, where nanodevices may be exploited to image external structures or biological molecules via the surface field they generate. PMID:27941889

  15. Stochastic quantum Zeno-based detection of noise correlations

    NASA Astrophysics Data System (ADS)

    Müller, Matthias M.; Gherardini, Stefano; Caruso, Filippo

    2016-12-01

    A system under constant observation is practically freezed to the measurement subspace. If the system driving is a random classical field, the survival probability of the system in the subspace becomes a random variable described by the Stochastic Quantum Zeno Dynamics (SQZD) formalism. Here, we study the time and ensemble average of this random survival probability and demonstrate how time correlations in the noisy environment determine whether the two averages do coincide or not. These environment time correlations can potentially generate non-Markovian dynamics of the quantum system depending on the structure and energy scale of the system Hamiltonian. We thus propose a way to detect time correlations of the environment by coupling a quantum probe system to it and observing the survival probability of the quantum probe in a measurement subspace. This will further contribute to the development of new schemes for quantum sensing technologies, where nanodevices may be exploited to image external structures or biological molecules via the surface field they generate.

  16. Limits in the characteristic-function description of non-Lindblad-type open quantum systems

    SciTech Connect

    Maniscalco, Sabrina

    2005-08-15

    In this paper I investigate the usability of the characteristic functions for the description of the dynamics of open quantum systems focussing on non-Lindblad-type master equations. I consider, as an example, a non-Markovian generalized master equation containing a memory kernel which may lead to nonphysical time evolutions characterized by negative values of the density matrix diagonal elements [S. M. Barnett and S. Stenholm, Phys. Rev. A 64, 033808 (2001)]. The main result of the paper is to demonstrate that there exist situations in which the symmetrically ordered characteristic function is perfectly well-defined while the corresponding density matrix loses positivity. Therefore, nonphysical situations may not show up in the characteristic function. As a consequence, the characteristic function cannot be considered an alternative complete description of the non-Lindblad dynamics.

  17. Stochastic games

    PubMed Central

    Solan, Eilon; Vieille, Nicolas

    2015-01-01

    In 1953, Lloyd Shapley contributed his paper “Stochastic games” to PNAS. In this paper, he defined the model of stochastic games, which were the first general dynamic model of a game to be defined, and proved that it admits a stationary equilibrium. In this Perspective, we summarize the historical context and the impact of Shapley’s contribution. PMID:26556883

  18. A novel spatial and stochastic model to evaluate the within- and between-farm transmission of classical swine fever virus. I. General concepts and description of the model.

    PubMed

    Martínez-López, B; Ivorra, B; Ramos, A M; Sánchez-Vizcaíno, J M

    2011-01-27

    A new stochastic and spatial model was developed to evaluate the potential spread of classical swine fever virus (CSFV) within- and between-farms, and considering the specific farm-to-farm contact network. Within-farm transmission was simulated using a modified SI model. Between-farm transmission was assumed to occur by direct contacts (i.e. animal movement) and indirect contacts (i.e. local spread, vehicle and person contacts) and considering the spatial location of farms. Control measures dictated by the European legislation (i.e. depopulation of infected farms, movement restriction, zoning, surveillance, contact tracing) were also implemented into the model. Model experimentation was performed using real data from Segovia, one of the provinces with highest density of pigs in Spain, and results were presented using the mean, 95% probability intervals [95% PI] and risk maps. The estimated mean [95% PI] number of infected, quarantined and depopulated farms were 3 [1,17], 23 [0,76] and 115 [0,318], respectively. The duration of the epidemic was 63 [26,177] days and the most important way of transmission was associated with local spread (61.4% of the infections). Results were consistent with the spread of previous CSFV introductions into the study region. The model and results presented here may be useful for the decision making process and for the improvement of the prevention and control programmes for CSFV.

  19. Analyzing a stochastic time series obeying a second-order differential equation.

    PubMed

    Lehle, B; Peinke, J

    2015-06-01

    The stochastic properties of a Langevin-type Markov process can be extracted from a given time series by a Markov analysis. Also processes that obey a stochastically forced second-order differential equation can be analyzed this way by employing a particular embedding approach: To obtain a Markovian process in 2N dimensions from a non-Markovian signal in N dimensions, the system is described in a phase space that is extended by the temporal derivative of the signal. For a discrete time series, however, this derivative can only be calculated by a differencing scheme, which introduces an error. If the effects of this error are not accounted for, this leads to systematic errors in the estimation of the drift and diffusion functions of the process. In this paper we will analyze these errors and we will propose an approach that correctly accounts for them. This approach allows an accurate parameter estimation and, additionally, is able to cope with weak measurement noise, which may be superimposed to a given time series.

  20. Lévy stable noise-induced transitions: stochastic resonance, resonant activation and dynamic hysteresis

    NASA Astrophysics Data System (ADS)

    Dybiec, Bartłomiej; Gudowska-Nowak, Ewa

    2009-05-01

    A standard approach to analysis of noise-induced effects in stochastic dynamics assumes a Gaussian character of the noise term describing interaction of the analyzed system with its complex surroundings. An additional assumption about the existence of timescale separation between the dynamics of the measured observable and the typical timescale of the noise allows external fluctuations to be modeled as temporally uncorrelated and therefore white. However, in many natural phenomena the assumptions concerning the above mentioned properties of 'Gaussianity' and 'whiteness' of the noise can be violated. In this context, in contrast to the spatiotemporal coupling characterizing general forms of non-Markovian or semi-Markovian Lévy walks, so called Lévy flights correspond to the class of Markov processes which can still be interpreted as white, but distributed according to a more general, infinitely divisible, stable and non-Gaussian law. Lévy noise-driven non-equilibrium systems are known to manifest interesting physical properties and have been addressed in various scenarios of physical transport exhibiting a superdiffusive behavior. Here we present a brief overview of our recent investigations aimed at understanding features of stochastic dynamics under the influence of Lévy white noise perturbations. We find that the archetypal phenomena of noise-induced ordering are robust and can be detected also in systems driven by memoryless, non-Gaussian, heavy-tailed fluctuations with infinite variance.

  1. STOCHASTIC COOLING FOR RHIC.

    SciTech Connect

    BLASKIEWICZ,M.BRENNAN,J.M.CAMERON,P.WEI,J.

    2003-05-12

    Emittance growth due to Intra-Beam Scattering significantly reduces the heavy ion luminosity lifetime in RHIC. Stochastic cooling of the stored beam could improve things considerably by counteracting IBS and preventing particles from escaping the rf bucket [1]. High frequency bunched-beam stochastic cooling is especially challenging but observations of Schottky signals in the 4-8 GHz band indicate that conditions are favorable in RHIC [2]. We report here on measurements of the longitudinal beam transfer function carried out with a pickup kicker pair on loan from FNAL TEVATRON. Results imply that for ions a coasting beam description is applicable and we outline some general features of a viable momentum cooling system for RHIC.

  2. Stochastic thermodynamics

    NASA Astrophysics Data System (ADS)

    Eichhorn, Ralf; Aurell, Erik

    2014-04-01

    'Stochastic thermodynamics as a conceptual framework combines the stochastic energetics approach introduced a decade ago by Sekimoto [1] with the idea that entropy can consistently be assigned to a single fluctuating trajectory [2]'. This quote, taken from Udo Seifert's [3] 2008 review, nicely summarizes the basic ideas behind stochastic thermodynamics: for small systems, driven by external forces and in contact with a heat bath at a well-defined temperature, stochastic energetics [4] defines the exchanged work and heat along a single fluctuating trajectory and connects them to changes in the internal (system) energy by an energy balance analogous to the first law of thermodynamics. Additionally, providing a consistent definition of trajectory-wise entropy production gives rise to second-law-like relations and forms the basis for a 'stochastic thermodynamics' along individual fluctuating trajectories. In order to construct meaningful concepts of work, heat and entropy production for single trajectories, their definitions are based on the stochastic equations of motion modeling the physical system of interest. Because of this, they are valid even for systems that are prevented from equilibrating with the thermal environment by external driving forces (or other sources of non-equilibrium). In that way, the central notions of equilibrium thermodynamics, such as heat, work and entropy, are consistently extended to the non-equilibrium realm. In the (non-equilibrium) ensemble, the trajectory-wise quantities acquire distributions. General statements derived within stochastic thermodynamics typically refer to properties of these distributions, and are valid in the non-equilibrium regime even beyond the linear response. The extension of statistical mechanics and of exact thermodynamic statements to the non-equilibrium realm has been discussed from the early days of statistical mechanics more than 100 years ago. This debate culminated in the development of linear response

  3. Stochastic Physicochemical Dynamics

    NASA Astrophysics Data System (ADS)

    Tsekov, R.

    2001-02-01

    Thermodynamic Relaxation in Quantum Systems: A new approach to quantum Markov processes is developed and the corresponding Fokker-Planck equation is derived. The latter is examined to reproduce known results from classical and quantum physics. It was also applied to the phase-space description of a mechanical system thus leading to a new treatment of this problem different from the Wigner presentation. The equilibrium probability density obtained in the mixed coordinate-momentum space is a reasonable extension of the Gibbs canonical distribution. The validity of the Einstein fluctuation-dissipation relation is discussed in respect to the type of relaxation in an isothermal system. The first model, presuming isothermic fluctuations, leads to the Einstein formula. The second model supposes adiabatic fluctuations and yields another relation between the diffusion coefficient and mobility of a Brownian particle. A new approach to relaxations in quantum systems is also proposed that demonstrates applicability only of the adiabatic model for description of the quantum Brownian dynamics. Stochastic Dynamics of Gas Molecules: A stochastic Langevin equation is derived, describing the thermal motion of a molecule immersed in a rested fluid of identical molecules. The fluctuation-dissipation theorem is proved and a number of correlation characteristics of the molecular Brownian motion are obtained. A short review of the classical theory of Brownian motion is presented. A new method is proposed for derivation of the Fokker-Planck equations, describing the probability density evolution, from stochastic differential equations. It is also proven via the central limit theorem that the white noise is only Gaussian. The applicability of stochastic differential equations to thermodynamics is considered and a new form, different from the classical Ito and Stratonovich forms, is introduced. It is shown that the new presentation is more appropriate for the description of thermodynamic

  4. Stochastic excitation of stellar oscillations

    NASA Astrophysics Data System (ADS)

    Samadi, Reza

    2001-05-01

    Since more than about thirty years, solar oscillations are thought to be excited stochastically by the turbulent motions in the solar convective zone. It is currently believed that oscillations of stars lower than 2 solar masses - which possess an upper convective zone - are excited stochastically by turbulent convection in their outer layers. Providing that accurate measurements of the oscillation amplitudes and damping rates are available it is possible to evaluate the power injected into the modes and thus - by comparison with the observations - to constrain current theories. A recent theoretical work (Samadi & Goupil, 2001; Samadi et al., 2001) supplements and reinforces the theory of stochastic excitation of star vibrations. This process was generalized to a global description of the turbulent state of their convective zone. The comparison between observation and theory, thus generalized, will allow to better know the turbulent spectrum of stars, and this in particular thanks to the COROT mission.

  5. Stochastic gravity

    NASA Astrophysics Data System (ADS)

    Ross, D. K.; Moreau, William

    1995-08-01

    We investigate stochastic gravity as a potentially fruitful avenue for studying quantum effects in gravity. Following the approach of stochastic electrodynamics ( sed), as a representation of the quantum gravity vacuum we construct a classical state of isotropic random gravitational radiation, expressed as a spin-2 field,h µυ (x), composed of plane waves of random phase on a flat spacetime manifold. Requiring Lorentz invariance leads to the result that the spectral composition function of the gravitational radiation,h(ω), must be proportional to 1/ω 2. The proportionality constant is determined by the Planck condition that the energy density consist ofħω/2 per normal mode, and this condition sets the amplitude scale of the random gravitational radiation at the order of the Planck length, giving a spectral composition functionh(ω) =√16πc 2Lp/ω2. As an application of stochastic gravity, we investigate the Davies-Unruh effect. We calculate the two-point correlation function (R iojo(Oτ-δτ/2)R kolo(O,τ+δτ/2)) of the measureable geodesic deviation tensor field,R iojo, for two situations: (i) at a point detector uniformly accelerating through the random gravitational radiation, and (ii) at an inertial detector in a heat bath of the random radiation at a finite temperature. We find that the two correlation functions agree to first order inaδτ/c provided that the temperature and acceleration satisfy the relationkT=ħa/2πc.

  6. Relations between entanglement and purity in non-Markovian dynamics

    NASA Astrophysics Data System (ADS)

    González-Gutiérrez, Carlos A.; Román-Ancheyta, Ricardo; Espitia, Diego; Lo Franco, Rosario

    2016-09-01

    Knowledge of the relationships among different features of quantumness, like entanglement and state purity, is important from both fundamental and practical viewpoints. Yet, this issue remains little explored in dynamical contexts for open quantum systems. We address this problem by studying the dynamics of entanglement and purity for two-qubit systems using paradigmatic models of radiation-matter interaction, with a qubit being isolated from the environment (spectator configuration). We show the effects of the corresponding local quantum channels on an initial two-qubit pure entangled state in the concurrence-purity diagram and find the conditions which enable dynamical closed formulas of concurrence, used to quantify entanglement, as a function of purity. We finally discuss the usefulness of these relations in assessing entanglement and purity thresholds which allow noisy quantum teleportation. Our results provide new insights about how different properties of composite open quantum systems behave and relate each other during quantum evolutions.

  7. Stochastic Cooling

    SciTech Connect

    Blaskiewicz, M.

    2011-01-01

    Stochastic Cooling was invented by Simon van der Meer and was demonstrated at the CERN ISR and ICE (Initial Cooling Experiment). Operational systems were developed at Fermilab and CERN. A complete theory of cooling of unbunched beams was developed, and was applied at CERN and Fermilab. Several new and existing rings employ coasting beam cooling. Bunched beam cooling was demonstrated in ICE and has been observed in several rings designed for coasting beam cooling. High energy bunched beams have proven more difficult. Signal suppression was achieved in the Tevatron, though operational cooling was not pursued at Fermilab. Longitudinal cooling was achieved in the RHIC collider. More recently a vertical cooling system in RHIC cooled both transverse dimensions via betatron coupling.

  8. Simple stochastic simulation.

    PubMed

    Schilstra, Maria J; Martin, Stephen R

    2009-01-01

    Stochastic simulations may be used to describe changes with time of a reaction system in a way that explicitly accounts for the fact that molecules show a significant degree of randomness in their dynamic behavior. The stochastic approach is almost invariably used when small numbers of molecules or molecular assemblies are involved because this randomness leads to significant deviations from the predictions of the conventional deterministic (or continuous) approach to the simulation of biochemical kinetics. Advances in computational methods over the three decades that have elapsed since the publication of Daniel Gillespie's seminal paper in 1977 (J. Phys. Chem. 81, 2340-2361) have allowed researchers to produce highly sophisticated models of complex biological systems. However, these models are frequently highly specific for the particular application and their description often involves mathematical treatments inaccessible to the nonspecialist. For anyone completely new to the field to apply such techniques in their own work might seem at first sight to be a rather intimidating prospect. However, the fundamental principles underlying the approach are in essence rather simple, and the aim of this article is to provide an entry point to the field for a newcomer. It focuses mainly on these general principles, both kinetic and computational, which tend to be not particularly well covered in specialist literature, and shows that interesting information may even be obtained using very simple operations in a conventional spreadsheet.

  9. Solving the Langevin equation with stochastic algebraically correlated noise

    NASA Astrophysics Data System (ADS)

    Płoszajczak, M.; Srokowski, T.

    1997-05-01

    The long time tail in the velocity and force autocorrelation function has been found recently in molecular dynamics simulations of peripheral collisions of ions. Simulation of those slowly decaying correlations in the stochastic transport theory requires the development of new methods of generating stochastic force of arbitrarily long correlation times. In this paper we propose a Markovian process, the multidimensional kangaroo process, which permits the description of various algebraically correlated stochastic processes.

  10. Stochastic resonance during a polymer translocation process

    NASA Astrophysics Data System (ADS)

    Mondal, Debasish; Muthukumar, Murugappan

    We study the translocation of a flexible polymer in a confined geometry subjected to a time-periodic external drive to explore stochastic resonance. We describe the equilibrium translocation process in terms of a Fokker-Planck description and use a discrete two-state model to describe the effect of the external driving force on the translocation dynamics. We observe that no stochastic resonance is possible if the associated free-energy barrier is purely entropic in nature. The polymer chain experiences a stochastic resonance effect only in presence of an energy threshold in terms of polymer-pore interaction. Once stochastic resonance is feasible, the chain entropy controls the optimal synchronization conditions significantly.

  11. Stochastic dynamics of cholera epidemics.

    PubMed

    Azaele, Sandro; Maritan, Amos; Bertuzzo, Enrico; Rodriguez-Iturbe, Ignacio; Rinaldo, Andrea

    2010-05-01

    We describe the predictions of an analytically tractable stochastic model for cholera epidemics following a single initial outbreak. The exact model relies on a set of assumptions that may restrict the generality of the approach and yet provides a realm of powerful tools and results. Without resorting to the depletion of susceptible individuals, as usually assumed in deterministic susceptible-infected-recovered models, we show that a simple stochastic equation for the number of ill individuals provides a mechanism for the decay of the epidemics occurring on the typical time scale of seasonality. The model is shown to provide a reasonably accurate description of the empirical data of the 2000/2001 cholera epidemic which took place in the Kwa Zulu-Natal Province, South Africa, with possibly notable epidemiological implications.

  12. Stochastic dynamics of cholera epidemics

    NASA Astrophysics Data System (ADS)

    Azaele, Sandro; Maritan, Amos; Bertuzzo, Enrico; Rodriguez-Iturbe, Ignacio; Rinaldo, Andrea

    2010-05-01

    We describe the predictions of an analytically tractable stochastic model for cholera epidemics following a single initial outbreak. The exact model relies on a set of assumptions that may restrict the generality of the approach and yet provides a realm of powerful tools and results. Without resorting to the depletion of susceptible individuals, as usually assumed in deterministic susceptible-infected-recovered models, we show that a simple stochastic equation for the number of ill individuals provides a mechanism for the decay of the epidemics occurring on the typical time scale of seasonality. The model is shown to provide a reasonably accurate description of the empirical data of the 2000/2001 cholera epidemic which took place in the Kwa Zulu-Natal Province, South Africa, with possibly notable epidemiological implications.

  13. Analysis of stochastically forced quasi-periodic attractors

    SciTech Connect

    Ryashko, Lev

    2015-11-30

    A problem of the analysis of stochastically forced quasi-periodic auto-oscillations of nonlinear dynamic systems is considered. A stationary distribution of random trajectories in the neighborhood of the corresponding deterministic attractor (torus) is studied. A parametric description of quadratic approximation of the quasipotential based on the stochastic sensitivity functions (SSF) technique is given. Using this technique, we analyse a dispersion of stochastic flows near the torus. For the case of two-torus in three-dimensional space, the stochastic sensitivity function is constructed.

  14. Stochastic cooling in RHIC

    SciTech Connect

    Brennan,J.M.; Blaskiewicz, M. M.; Severino, F.

    2009-05-04

    After the success of longitudinal stochastic cooling of bunched heavy ion beam in RHIC, transverse stochastic cooling in the vertical plane of Yellow ring was installed and is being commissioned with proton beam. This report presents the status of the effort and gives an estimate, based on simulation, of the RHIC luminosity with stochastic cooling in all planes.

  15. Method to describe stochastic dynamics using an optimal coordinate.

    PubMed

    Krivov, Sergei V

    2013-12-01

    A general method to describe the stochastic dynamics of Markov processes is suggested. The method aims to solve three related problems: the determination of an optimal coordinate for the description of stochastic dynamics; the reconstruction of time from an ensemble of stochastic trajectories; and the decomposition of stationary stochastic dynamics into eigenmodes which do not decay exponentially with time. The problems are solved by introducing additive eigenvectors which are transformed by a stochastic matrix in a simple way - every component is translated by a constant distance. Such solutions have peculiar properties. For example, an optimal coordinate for stochastic dynamics with detailed balance is a multivalued function. An optimal coordinate for a random walk on a line corresponds to the conventional eigenvector of the one-dimensional Dirac equation. The equation for the optimal coordinate in a slowly varying potential reduces to the Hamilton-Jacobi equation for the action function.

  16. Stochastic thermodynamics of information processing

    NASA Astrophysics Data System (ADS)

    Cardoso Barato, Andre

    2015-03-01

    We consider two recent advancements on theoretical aspects of thermodynamics of information processing. First we show that the theory of stochastic thermodynamics can be generalized to include information reservoirs. These reservoirs can be seen as a sequence of bits which has its Shannon entropy changed due to the interaction with the system. Second we discuss bipartite systems, which provide a convenient description of Maxwell's demon. Analyzing a special class of bipartite systems we show that they can be used to study cellular information processing, allowing for the definition of an entropic rate that quantifies how much a cell learns about a fluctuating external environment and that is bounded by the thermodynamic entropy production.

  17. Stochastic differential equations

    SciTech Connect

    Sobczyk, K. )

    1990-01-01

    This book provides a unified treatment of both regular (or random) and Ito stochastic differential equations. It focuses on solution methods, including some developed only recently. Applications are discussed, in particular an insight is given into both the mathematical structure, and the most efficient solution methods (analytical as well as numerical). Starting from basic notions and results of the theory of stochastic processes and stochastic calculus (including Ito's stochastic integral), many principal mathematical problems and results related to stochastic differential equations are expounded here for the first time. Applications treated include those relating to road vehicles, earthquake excitations and offshore structures.

  18. Stochastic symmetries of Wick type stochastic ordinary differential equations

    NASA Astrophysics Data System (ADS)

    Ünal, Gazanfer

    2015-04-01

    We consider Wick type stochastic ordinary differential equations with Gaussian white noise. We define the stochastic symmetry transformations and Lie equations in Kondratiev space (S)-1N. We derive the determining system of Wick type stochastic partial differential equations with Gaussian white noise. Stochastic symmetries for stochastic Bernoulli, Riccati and general stochastic linear equation in (S)-1N are obtained. A stochastic version of canonical variables is also introduced.

  19. Turbulence, Spontaneous Stochasticity and Climate

    NASA Astrophysics Data System (ADS)

    Eyink, Gregory

    Turbulence is well-recognized as important in the physics of climate. Turbulent mixing plays a crucial role in the global ocean circulation. Turbulence also provides a natural source of variability, which bedevils our ability to predict climate. I shall review here a recently discovered turbulence phenomenon, called ``spontaneous stochasticity'', which makes classical dynamical systems as intrinsically random as quantum mechanics. Turbulent dissipation and mixing of scalars (passive or active) is now understood to require Lagrangian spontaneous stochasticity, which can be expressed by an exact ``fluctuation-dissipation relation'' for scalar turbulence (joint work with Theo Drivas). Path-integral methods such as developed for quantum mechanics become necessary to the description. There can also be Eulerian spontaneous stochasticity of the flow fields themselves, which is intimately related to the work of Kraichnan and Leith on unpredictability of turbulent flows. This leads to problems similar to those encountered in quantum field theory. To quantify uncertainty in forecasts (or hindcasts), we can borrow from quantum field-theory the concept of ``effective actions'', which characterize climate averages by a variational principle and variances by functional derivatives. I discuss some work with Tom Haine (JHU) and Santha Akella (NASA-Goddard) to make this a practical predictive tool. More ambitious application of the effective action is possible using Rayleigh-Ritz schemes.

  20. The Quadrature Master Equations

    NASA Astrophysics Data System (ADS)

    Hassan, N. J.; Pourdarvish, A.; Sadeghi, J.; Olaomi, J. O.

    2017-04-01

    In this paper, we derive the non-Markovian stochastic equation of motion (SEM) and master equations (MEs) for the open quantum system by using the non-Markovian stochastic Schrödinger equations (SSEs) for the quadrature unraveling in linear and nonlinear cases. The SSEs for quadrature unraveling arise as a special case of a quantum system. Also we derive the Markovian SEM and ME by using linear and nonlinear Itô SSEs for the measurement probabilities. In linear non-Markovian case, we calculate the convolutionless linear quadrature non-Markovian SEM and ME. We take advantage from example and show that corresponding theory.

  1. Stochastic longshore current dynamics

    NASA Astrophysics Data System (ADS)

    Restrepo, Juan M.; Venkataramani, Shankar

    2016-12-01

    We develop a stochastic parametrization, based on a 'simple' deterministic model for the dynamics of steady longshore currents, that produces ensembles that are statistically consistent with field observations of these currents. Unlike deterministic models, stochastic parameterization incorporates randomness and hence can only match the observations in a statistical sense. Unlike statistical emulators, in which the model is tuned to the statistical structure of the observation, stochastic parametrization are not directly tuned to match the statistics of the observations. Rather, stochastic parameterization combines deterministic, i.e physics based models with stochastic models for the "missing physics" to create hybrid models, that are stochastic, but yet can be used for making predictions, especially in the context of data assimilation. We introduce a novel measure of the utility of stochastic models of complex processes, that we call consistency of sensitivity. A model with poor consistency of sensitivity requires a great deal of tuning of parameters and has a very narrow range of realistic parameters leading to outcomes consistent with a reasonable spectrum of physical outcomes. We apply this metric to our stochastic parametrization and show that, the loss of certainty inherent in model due to its stochastic nature is offset by the model's resulting consistency of sensitivity. In particular, the stochastic model still retains the forward sensitivity of the deterministic model and hence respects important structural/physical constraints, yet has a broader range of parameters capable of producing outcomes consistent with the field data used in evaluating the model. This leads to an expanded range of model applicability. We show, in the context of data assimilation, the stochastic parametrization of longshore currents achieves good results in capturing the statistics of observation that were not used in tuning the model.

  2. Perspective: Stochastic algorithms for chemical kinetics

    PubMed Central

    Gillespie, Daniel T.; Hellander, Andreas; Petzold, Linda R.

    2013-01-01

    We outline our perspective on stochastic chemical kinetics, paying particular attention to numerical simulation algorithms. We first focus on dilute, well-mixed systems, whose description using ordinary differential equations has served as the basis for traditional chemical kinetics for the past 150 years. For such systems, we review the physical and mathematical rationale for a discrete-stochastic approach, and for the approximations that need to be made in order to regain the traditional continuous-deterministic description. We next take note of some of the more promising strategies for dealing stochastically with stiff systems, rare events, and sensitivity analysis. Finally, we review some recent efforts to adapt and extend the discrete-stochastic approach to systems that are not well-mixed. In that currently developing area, we focus mainly on the strategy of subdividing the system into well-mixed subvolumes, and then simulating diffusional transfers of reactant molecules between adjacent subvolumes together with chemical reactions inside the subvolumes. PMID:23656106

  3. Stochastic mapping of the Michaelis-Menten mechanism.

    PubMed

    Dóka, Éva; Lente, Gábor

    2012-02-07

    The Michaelis-Menten mechanism is an extremely important tool for understanding enzyme-catalyzed transformation of substrates into final products. In this work, a computationally viable, full stochastic description of the Michaelis-Menten kinetic scheme is introduced based on a stochastic equivalent of the steady-state assumption. The full solution derived is free of restrictions on amounts of substance or parameter values and is used to create stochastic maps of the Michaelis-Menten mechanism, which show the regions in the parameter space of the scheme where the use of the stochastic kinetic approach is inevitable. The stochastic aspects of recently published examples of single-enzyme kinetic studies are analyzed using these maps.

  4. Stochastic Convection Parameterizations

    NASA Technical Reports Server (NTRS)

    Teixeira, Joao; Reynolds, Carolyn; Suselj, Kay; Matheou, Georgios

    2012-01-01

    computational fluid dynamics, radiation, clouds, turbulence, convection, gravity waves, surface interaction, radiation interaction, cloud and aerosol microphysics, complexity (vegetation, biogeochemistry, radiation versus turbulence/convection stochastic approach, non-linearities, Monte Carlo, high resolutions, large-Eddy Simulations, cloud structure, plumes, saturation in tropics, forecasting, parameterizations, stochastic, radiation-clod interaction, hurricane forecasts

  5. A Stochastic Employment Problem

    ERIC Educational Resources Information Center

    Wu, Teng

    2013-01-01

    The Stochastic Employment Problem(SEP) is a variation of the Stochastic Assignment Problem which analyzes the scenario that one assigns balls into boxes. Balls arrive sequentially with each one having a binary vector X = (X[subscript 1], X[subscript 2],...,X[subscript n]) attached, with the interpretation being that if X[subscript i] = 1 the ball…

  6. Agent based reasoning for the non-linear stochastic models of long-range memory

    NASA Astrophysics Data System (ADS)

    Kononovicius, A.; Gontis, V.

    2012-02-01

    We extend Kirman's model by introducing variable event time scale. The proposed flexible time scale is equivalent to the variable trading activity observed in financial markets. Stochastic version of the extended Kirman's agent based model is compared to the non-linear stochastic models of long-range memory in financial markets. The agent based model providing matching macroscopic description serves as a microscopic reasoning of the earlier proposed stochastic model exhibiting power law statistics.

  7. Stochastic Pseudo-Boolean Optimization

    DTIC Science & Technology

    2011-07-31

    analysis of two-stage stochastic minimum s-t cut problems; (iv) exact solution algorithm for a class of stochastic bilevel knapsack problems; (v) exact...57 5 Bilevel Knapsack Problems with Stochastic Right-Hand Sides 58 6 Two-Stage Stochastic Assignment Problems 59 6.1 Introduction...programming formulations and related computational complexity issues. • Section 5 considers a specific stochastic extension of the bilevel knapsack

  8. Research in Stochastic Processes.

    DTIC Science & Technology

    1985-09-01

    appear. G. Kallianpur, Finitely additive approach to nonlinear filtering, Proc. Bernoulli Soc. Conf. on Stochastic Processes, T. Hida , ed., Springer, to...Nov. 85, in Proc. Bernoulli Soc. Conf. on Stochastic Processes, T. Hida , ed., Springer, to appear. i. Preparation T. Hsing, Extreme value theory for...1507 Carroll, R.J., Spiegelman, C.H., Lan, K.K.G., Bailey , K.T. and Abbott, R.D., Errors in-variables for binary regression models, Aug.82. 1508

  9. An Extended Stochastic Petri Nets Modeling Method for Collaborative Workflow Process

    NASA Astrophysics Data System (ADS)

    Yi, Yang

    Workflow process modeling is important for BPR; some classic process modeling methods have many defects, such as weakness description ability, high modeling complex, and so on. In this paper, we explore an extended stochastic Petri Nets modeling method based on basic Petri Nets. This method can model concurrency collaborative workflow process under stochastic environment.

  10. Stochastic Simulation Tool for Aerospace Structural Analysis

    NASA Technical Reports Server (NTRS)

    Knight, Norman F.; Moore, David F.

    2006-01-01

    Stochastic simulation refers to incorporating the effects of design tolerances and uncertainties into the design analysis model and then determining their influence on the design. A high-level evaluation of one such stochastic simulation tool, the MSC.Robust Design tool by MSC.Software Corporation, has been conducted. This stochastic simulation tool provides structural analysts with a tool to interrogate their structural design based on their mathematical description of the design problem using finite element analysis methods. This tool leverages the analyst's prior investment in finite element model development of a particular design. The original finite element model is treated as the baseline structural analysis model for the stochastic simulations that are to be performed. A Monte Carlo approach is used by MSC.Robust Design to determine the effects of scatter in design input variables on response output parameters. The tool was not designed to provide a probabilistic assessment, but to assist engineers in understanding cause and effect. It is driven by a graphical-user interface and retains the engineer-in-the-loop strategy for design evaluation and improvement. The application problem for the evaluation is chosen to be a two-dimensional shell finite element model of a Space Shuttle wing leading-edge panel under re-entry aerodynamic loading. MSC.Robust Design adds value to the analysis effort by rapidly being able to identify design input variables whose variability causes the most influence in response output parameters.

  11. Descriptive statistics.

    PubMed

    Shi, Runhua; McLarty, Jerry W

    2009-10-01

    In this article, we introduced basic concepts of statistics, type of distributions, and descriptive statistics. A few examples were also provided. The basic concepts presented herein are only a fraction of the concepts related to descriptive statistics. Also, there are many commonly used distributions not presented herein, such as Poisson distributions for rare events and exponential distributions, F distributions, and logistic distributions. More information can be found in many statistics books and publications.

  12. Heterogeneous ice nucleation: bridging stochastic and singular freezing behavior

    NASA Astrophysics Data System (ADS)

    Niedermeier, D.; Shaw, R. A.; Hartmann, S.; Wex, H.; Clauss, T.; Voigtländer, J.; Stratmann, F.

    2011-01-01

    Heterogeneous ice nucleation, a primary pathway for ice formation in the atmosphere, has been described alternately as being stochastic, in direct analogy with homogeneous nucleation, or singular, with ice nuclei initiating freezing at deterministic temperatures. We present an idealized model that bridges these stochastic and singular descriptions of heterogeneous ice nucleation. This "soccer ball" model treats statistically similar particles as being covered with surface sites (patches of finite area) characterized by different nucleation barriers, but with each surface site following the stochastic nature of ice embryo formation. The model provides a phenomenological explanation for seemingly contradictory experimental results obtained in our research groups. We suggest that ice nucleation is fundamentally a stochastic process but that for realistic atmospheric particle populations this process can be masked by the heterogeneity of surface properties. Full evaluation of the model will require experiments with well characterized ice nucleating particles and the ability to vary both temperature and waiting time for freezing.

  13. Modeling and Properties of Nonlinear Stochastic Dynamical System of Continuous Culture

    NASA Astrophysics Data System (ADS)

    Wang, Lei; Feng, Enmin; Ye, Jianxiong; Xiu, Zhilong

    The stochastic counterpart to the deterministic description of continuous fermentation with ordinary differential equation is investigated in the process of glycerol bio-dissimilation to 1,3-propanediol by Klebsiella pneumoniae. We briefly discuss the continuous fermentation process driven by three-dimensional Brownian motion and Lipschitz coefficients, which is suitable for the factual fermentation. Subsequently, we study the existence and uniqueness of solutions for the stochastic system as well as the boundedness of the Two-order Moment and the Markov property of the solution. Finally stochastic simulation is carried out under the Stochastic Euler-Maruyama method.

  14. Fast Quantum Algorithms for Numerical Integrals and Stochastic Processes

    NASA Technical Reports Server (NTRS)

    Abrams, D.; Williams, C.

    1999-01-01

    We discuss quantum algorithms that calculate numerical integrals and descriptive statistics of stochastic processes. With either of two distinct approaches, one obtains an exponential speed increase in comparison to the fastest known classical deterministic algotithms and a quadratic speed increase incomparison to classical Monte Carlo methods.

  15. Stochastic cooling at Fermilab

    SciTech Connect

    Marriner, J.

    1986-08-01

    The topics discussed are the stochastic cooling systems in use at Fermilab and some of the techniques that have been employed to meet the particular requirements of the anti-proton source. Stochastic cooling at Fermilab became of paramount importance about 5 years ago when the anti-proton source group at Fermilab abandoned the electron cooling ring in favor of a high flux anti-proton source which relied solely on stochastic cooling to achieve the phase space densities necessary for colliding proton and anti-proton beams. The Fermilab systems have constituted a substantial advance in the techniques of cooling including: large pickup arrays operating at microwave frequencies, extensive use of cryogenic techniques to reduce thermal noise, super-conducting notch filters, and the development of tools for controlling and for accurately phasing the system.

  16. STOCHASTIC COOLING FOR BUNCHED BEAMS.

    SciTech Connect

    BLASKIEWICZ, M.

    2005-05-16

    Problems associated with bunched beam stochastic cooling are reviewed. A longitudinal stochastic cooling system for RHIC is under construction and has been partially commissioned. The state of the system and future plans are discussed.

  17. Markov stochasticity coordinates

    NASA Astrophysics Data System (ADS)

    Eliazar, Iddo

    2017-01-01

    Markov dynamics constitute one of the most fundamental models of random motion between the states of a system of interest. Markov dynamics have diverse applications in many fields of science and engineering, and are particularly applicable in the context of random motion in networks. In this paper we present a two-dimensional gauging method of the randomness of Markov dynamics. The method-termed Markov Stochasticity Coordinates-is established, discussed, and exemplified. Also, the method is tweaked to quantify the stochasticity of the first-passage-times of Markov dynamics, and the socioeconomic equality and mobility in human societies.

  18. Stochastic demographic forecasting.

    PubMed

    Lee, R D

    1992-11-01

    "This paper describes a particular approach to stochastic population forecasting, which is implemented for the U.S.A. through 2065. Statistical time series methods are combined with demographic models to produce plausible long run forecasts of vital rates, with probability distributions. The resulting mortality forecasts imply gains in future life expectancy that are roughly twice as large as those forecast by the Office of the Social Security Actuary.... Resulting stochastic forecasts of the elderly population, elderly dependency ratios, and payroll tax rates for health, education and pensions are presented."

  19. Allee threshold and stochasticity in biological invasions: colonization time at low propagule pressure.

    PubMed

    Potapov, Alex; Rajakaruna, Harshana

    2013-11-21

    We consider the problem of estimating the time needed for species colonization. The analysis is based upon the known population dynamic models by Dennis with minor modification to the Allee effect description, which allows us to obtain an analytical expression for the colonization time. For the stochastic counterpart of the models in diffusion approximation, we (1) propose the description of immigration stochasticity, (2) provide the estimates of time required for the population to overcome strong demographic Allee effect, and (3) consider the numerical results for mean colonization time and its uncertainty. Strong Allee effect strictly disallows populations at small immigration rates to colonize new habitats, unless the stochasticity in immigration, environment, or demography is present, or incorporated into the model. Immigration stochasticity, complementing with environmental and demographic stochasticity, enables the populations to overcome the Allee threshold even at low values of propagule pressure.

  20. Analysis of bilinear stochastic systems

    NASA Technical Reports Server (NTRS)

    Willsky, A. S.; Martin, D. N.; Marcus, S. I.

    1975-01-01

    Analysis of stochastic dynamical systems that involve multiplicative (bilinear) noise processes. After defining the systems of interest, consideration is given to the evolution of the moments of such systems, the question of stochastic stability, and estimation for bilinear stochastic systems. Both exact and approximate methods of analysis are introduced, and, in particular, the uses of Lie-theoretic concepts and harmonic analysis are discussed.

  1. Anaphoric Descriptions

    ERIC Educational Resources Information Center

    Beller, Charley

    2013-01-01

    The study of definite descriptions has been a central part of research in linguistics and philosophy of language since Russell's seminal work "On Denoting" (Russell 1905). In that work Russell quickly dispatches analyses of denoting expressions with forms like "no man," "some man," "a man," and "every…

  2. On Stochastic Approximation.

    ERIC Educational Resources Information Center

    Wolff, Hans

    This paper deals with a stochastic process for the approximation of the root of a regression equation. This process was first suggested by Robbins and Monro. The main result here is a necessary and sufficient condition on the iteration coefficients for convergence of the process (convergence with probability one and convergence in the quadratic…

  3. Stochastic decentralized systems

    NASA Astrophysics Data System (ADS)

    Barfoot, Timothy David

    Fundamental aspects of decentralized systems are considered from a control perspective. The stochastic framework afforded by Markov systems is presented as a formal setting in which to study decentralized systems. A stochastic algebra is introduced which allows Markov systems to be considered in matrix format but also strikes an important connection to the classic linear system originally studied by Kalman [1960]. The process of decentralization is shown to impose constraints on observability and controllability of a system. However, it is argued that communicating decentralized controllers can implement any control law possible with a centralized controller. Communication is shown to serve a dual role, both enabling sensor data to be shared and actions to be coordinated. The viabilities of these two types of communication are tested on a real network of mobile robots where they are found to be successful at a variety of tasks. Action coordination is reframed as a decentralized decision making process whereupon stochastic cellular automata (SCA) are introduced as a model. Through studies of SCA it is found that coordination in a group of arbitrarily and sparsely connected agents is possible using simple rules. The resulting stochastic mechanism may be immediately used as a practical decentralized decision making tool (it is tested on a group of mobile robots) but, it furthermore provides insight into the general features of self-organizing systems.

  4. Elementary stochastic cooling

    SciTech Connect

    Tollestrup, A.V.; Dugan, G

    1983-12-01

    Major headings in this review include: proton sources; antiproton production; antiproton sources and Liouville, the role of the Debuncher; transverse stochastic cooling, time domain; the accumulator; frequency domain; pickups and kickers; Fokker-Planck equation; calculation of constants in the Fokker-Planck equation; and beam feedback. (GHT)

  5. Controlled Stochastic Dynamical Systems

    DTIC Science & Technology

    2007-04-18

    the existence of value functions of two-player zero-sum stochastic differential games Indiana Univ. Math. Journal, 38 (1989), pp 293-314. [6] George ...control problems, Adv. Appl. Prob., 15, (1983) pp 225-254. [10] Karatzas, I. Ocone, D., Wang, H. and Zervos , M., Finite fuel singular control with

  6. ON NONSTATIONARY STOCHASTIC MODELS FOR EARTHQUAKES.

    USGS Publications Warehouse

    Safak, Erdal; Boore, David M.

    1986-01-01

    A seismological stochastic model for earthquake ground-motion description is presented. Seismological models are based on the physical properties of the source and the medium and have significant advantages over the widely used empirical models. The model discussed here provides a convenient form for estimating structural response by using random vibration theory. A commonly used random process for ground acceleration, filtered white-noise multiplied by an envelope function, introduces some errors in response calculations for structures whose periods are longer than the faulting duration. An alternate random process, filtered shot-noise process, eliminates these errors.

  7. Stochastic Time-Dependent Current-Density Functional Theory

    NASA Astrophysics Data System (ADS)

    D'Agosta, Roberto

    2008-03-01

    Static and dynamical density functional methods have been applied with a certain degree of success to a variety of closed quantum mechanical systems, i.e., systems that can be described via a Hamiltonian dynamics. However, the relevance of open quantum systems - those coupled to external environments, e.g., baths or reservoirs - cannot be overestimated. To investigate open quantum systems with DFT methods we have introduced a new theory, we have named Stochastic Time-Dependent Current Density Functional theory (S-TDCDFT) [1]: starting from a suitable description of the system dynamics via a stochastic Schrödinger equation [2], we have proven that given an initial quantum state and the coupling between the system and the environment, there is a one-to-one correspondence between the ensemble-averaged current density and the external vector potential applied to the system.In this talk, I will introduce the stochastic formalism needed for the description of open quantum systems, discuss in details the theorem of Stochastic TD-CDFT, and provide few examples of its applicability like the dissipative dynamics of excited systems, quantum-measurement theory and other applications relevant to charge and energy transport in nanoscale systems.[1] M. Di Ventra and R. D'Agosta, Physical Review Letters 98, 226403 (2007)[2] N.G. van Kampen, Stochastic processes in Physics and Chemistry, (North Holland, 2001), 2nd ed.

  8. Stochastic computing with biomolecular automata.

    PubMed

    Adar, Rivka; Benenson, Yaakov; Linshiz, Gregory; Rosner, Amit; Tishby, Naftali; Shapiro, Ehud

    2004-07-06

    Stochastic computing has a broad range of applications, yet electronic computers realize its basic step, stochastic choice between alternative computation paths, in a cumbersome way. Biomolecular computers use a different computational paradigm and hence afford novel designs. We constructed a stochastic molecular automaton in which stochastic choice is realized by means of competition between alternative biochemical pathways, and choice probabilities are programmed by the relative molar concentrations of the software molecules coding for the alternatives. Programmable and autonomous stochastic molecular automata have been shown to perform direct analysis of disease-related molecular indicators in vitro and may have the potential to provide in situ medical diagnosis and cure.

  9. Stochastic analysis of a miRNA-protein toggle switch.

    PubMed

    Giampieri, E; Remondini, D; de Oliveira, L; Castellani, G; Lió, P

    2011-10-01

    Within systems biology there is an increasing interest in the stochastic behavior of genetic and biochemical reaction networks. An appropriate stochastic description is provided by the chemical master equation, which represents a continuous time Markov chain (CTMC). In this paper we consider the stochastic properties of a toggle switch, involving a protein compound (E2Fs and Myc) and a miRNA cluster (miR-17-92), known to control the eukaryotic cell cycle and possibly involved in oncogenesis, recently proposed in the literature within a deterministic framework. Due to the inherent stochasticity of biochemical processes and the small number of molecules involved, the stochastic approach should be more correct in describing the real system: we study the agreement between the two approaches by exploring the system parameter space. We address the problem by proposing a simplified version of the model that allows analytical treatment, and by performing numerical simulations for the full model. We observed optimal agreement between the stochastic and the deterministic description of the circuit in a large range of parameters, but some substantial differences arise in at least two cases: (1) when the deterministic system is in the proximity of a transition from a monostable to a bistable configuration, and (2) when bistability (in the deterministic system) is "masked" in the stochastic system by the distribution tails. The approach provides interesting estimates of the optimal number of molecules involved in the toggle switch. Our discussion of the points of strengths, potentiality and weakness of the chemical master equation in systems biology and the differences with respect to deterministic modeling are leveraged in order to provide useful advice for both the bioinformatician and the theoretical scientist.

  10. Conservative Diffusions: a Constructive Approach to Nelson's Stochastic Mechanics.

    NASA Astrophysics Data System (ADS)

    Carlen, Eric Anders

    In Nelson's stochastic mechanics, quantum phenomena are described in terms of diffusions instead of wave functions; this thesis is a study of that description. We emphasize that we are concerned here with the possibility of describing, as opposed to explaining, quantum phenomena in terms of diffusions. In this direction, the following questions arise: "Do the diffusions of stochastic mechanics--which are formally given by stochastic differential equations with extremely singular coefficients--really exist?" Given that they exist, one can ask, "Do these diffusions have physically reasonable sample path behavior, and can we use information about sample paths to study the behavior of physical systems?" These are the questions we treat in this thesis. In Chapter I we review stochastic mechanics and diffusion theory, using the Guerra-Morato variational principle to establish the connection with the Schroedinger equation. This chapter is largely expository; however, there are some novel features and proofs. In Chapter II we settle the first of the questions raised above. Using PDE methods, we construct the diffusions of stochastic mechanics. Our result is sufficiently general to be of independent mathematical interest. In Chapter III we treat potential scattering in stochastic mechanics and discuss direct probabilistic methods of studying quantum scattering problems. Our results provide a solid "Yes" in answer to the second question raised above.

  11. [Descriptive statistics].

    PubMed

    Rendón-Macías, Mario Enrique; Villasís-Keever, Miguel Ángel; Miranda-Novales, María Guadalupe

    2016-01-01

    Descriptive statistics is the branch of statistics that gives recommendations on how to summarize clearly and simply research data in tables, figures, charts, or graphs. Before performing a descriptive analysis it is paramount to summarize its goal or goals, and to identify the measurement scales of the different variables recorded in the study. Tables or charts aim to provide timely information on the results of an investigation. The graphs show trends and can be histograms, pie charts, "box and whiskers" plots, line graphs, or scatter plots. Images serve as examples to reinforce concepts or facts. The choice of a chart, graph, or image must be based on the study objectives. Usually it is not recommended to use more than seven in an article, also depending on its length.

  12. Probabilistic description of traffic flow

    NASA Astrophysics Data System (ADS)

    Mahnke, R.; Kaupužs, J.; Lubashevsky, I.

    2005-03-01

    A stochastic description of traffic flow, called probabilistic traffic flow theory, is developed. The general master equation is applied to relatively simple models to describe the formation and dissolution of traffic congestions. Our approach is mainly based on spatially homogeneous systems like periodically closed circular rings without on- and off-ramps. We consider a stochastic one-step process of growth or shrinkage of a car cluster (jam). As generalization we discuss the coexistence of several car clusters of different sizes. The basic problem is to find a physically motivated ansatz for the transition rates of the attachment and detachment of individual cars to a car cluster consistent with the empirical observations in real traffic. The emphasis is put on the analogy with first-order phase transitions and nucleation phenomena in physical systems like supersaturated vapour. The results are summarized in the flux-density relation, the so-called fundamental diagram of traffic flow, and compared with empirical data. Different regimes of traffic flow are discussed: free flow, congested mode as stop-and-go regime, and heavy viscous traffic. The traffic breakdown is studied based on the master equation as well as the Fokker-Planck approximation to calculate mean first passage times or escape rates. Generalizations are developed to allow for on-ramp effects. The calculated flux-density relation and characteristic breakdown times coincide with empirical data measured on highways. Finally, a brief summary of the stochastic cellular automata approach is given.

  13. Stochastic Flow Modeling for Resin Transfer Moulding

    NASA Astrophysics Data System (ADS)

    Desplentere, Frederik; Verpoest, Ignaas; Lomov, Stepan

    2009-07-01

    Liquid moulding processes suffer from inherently present scatter in the textile reinforcement properties. This variability can lead to unwanted filling patterns within the mould resulting in bad parts. If thermoplastic resins are used with the in-situ polymerisation technique, an additional difficulty appears. The time window to inject the material is small if industrial processing parameters are used (<5 minutes). To model the stochastic nature of RTM, Darcy's description of the mould filling process has been used with the permeability distribution of the preform given as a random field. The random field of the permeability is constructed as a correlated field with an exponential correlation function. Optical microscopy and X-ray micro-CT have been used to study the stochastic parameters of the geometry for 2D and 3D woven textile preforms. The parameters describing the random permeability field (average, standard deviation and correlation length) are identified based on the stochastic parameters of the geometry for the preforms, analytical estimations and CFD modelling of the permeability. In order to implement the random field for the permeability and the variability for the resin viscosity, an add-on to the mould filling simulation software PAM-RTM™ has been developed. This analysis has been validated on case studies.

  14. A stochastic approach to model validation

    NASA Astrophysics Data System (ADS)

    Luis, Steven J.; McLaughlin, Dennis

    This paper describes a stochastic approach for assessing the validity of environmental models. In order to illustrate basic concepts we focus on the problem of modeling moisture movement through an unsaturated porous medium. We assume that the modeling objective is to predict the mean distribution of moisture content over time and space. The mean moisture content describes the large-scale flow behavior of most interest in many practical applications. The model validation process attempts to determine whether the model's predictions are acceptably close to the mean. This can be accomplished by comparing small-scale measurements of moisture content to the model's predictions. Differences between these two quantities can be attributed to three distinct 'error sources': (1) measurement error, (2) spatial heterogeneity, and (3) model error. If we adopt appropriate stochastic descriptions for the first two sources of error we can view model validation as a hypothesis testing problem where the null hypothesis states that model error is negligible. We illustrate this concept by comparing the predictions of a simple two-dimensional deterministic model to measurements collected during a field experiment carried out near Las Cruces, New Mexico. Preliminary results from this field test indicate that a stochastic approach to validation can identify model deficiencies and provide objective standards for model performance.

  15. Stochastic hyperfine interactions modeling library

    NASA Astrophysics Data System (ADS)

    Zacate, Matthew O.; Evenson, William E.

    2011-04-01

    The stochastic hyperfine interactions modeling library (SHIML) provides a set of routines to assist in the development and application of stochastic models of hyperfine interactions. The library provides routines written in the C programming language that (1) read a text description of a model for fluctuating hyperfine fields, (2) set up the Blume matrix, upon which the evolution operator of the system depends, and (3) find the eigenvalues and eigenvectors of the Blume matrix so that theoretical spectra of experimental techniques that measure hyperfine interactions can be calculated. The optimized vector and matrix operations of the BLAS and LAPACK libraries are utilized; however, there was a need to develop supplementary code to find an orthonormal set of (left and right) eigenvectors of complex, non-Hermitian matrices. In addition, example code is provided to illustrate the use of SHIML to generate perturbed angular correlation spectra for the special case of polycrystalline samples when anisotropy terms of higher order than A can be neglected. Program summaryProgram title: SHIML Catalogue identifier: AEIF_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AEIF_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: GNU GPL 3 No. of lines in distributed program, including test data, etc.: 8224 No. of bytes in distributed program, including test data, etc.: 312 348 Distribution format: tar.gz Programming language: C Computer: Any Operating system: LINUX, OS X RAM: Varies Classification: 7.4 External routines: TAPP [1], BLAS [2], a C-interface to BLAS [3], and LAPACK [4] Nature of problem: In condensed matter systems, hyperfine methods such as nuclear magnetic resonance (NMR), Mössbauer effect (ME), muon spin rotation (μSR), and perturbed angular correlation spectroscopy (PAC) measure electronic and magnetic structure within Angstroms of nuclear probes through the hyperfine interaction. When

  16. Analytic descriptions of stochastic bistable systems under force ramp

    SciTech Connect

    Friddle, Raymond W.

    2016-05-13

    Solving the two-state master equation with time-dependent rates, the ubiquitous driven bistable system, is a long-standing problem that does not permit a complete solution for all driving rates. We show an accurate approximation to this problem by considering the system in the control parameter regime. Moreover, the results are immediately applicable to a diverse range of bistable systems including single-molecule mechanics.

  17. STOCHASTIC DESCRIPTION OF SUBGRID POLLUTANT VARIABILITY IN CMAQ

    EPA Science Inventory

    This paper describes a tool for investigating and describing fine scale spatial variability in model concentration fields with the goal of improving the use of air quality models for driving exposure modeling to assess human risk to hazardous air pollutants or air toxics. Region...

  18. Stochastic ice stream dynamics

    NASA Astrophysics Data System (ADS)

    Mantelli, Elisa; Bertagni, Matteo Bernard; Ridolfi, Luca

    2016-08-01

    Ice streams are narrow corridors of fast-flowing ice that constitute the arterial drainage network of ice sheets. Therefore, changes in ice stream flow are key to understanding paleoclimate, sea level changes, and rapid disintegration of ice sheets during deglaciation. The dynamics of ice flow are tightly coupled to the climate system through atmospheric temperature and snow recharge, which are known exhibit stochastic variability. Here we focus on the interplay between stochastic climate forcing and ice stream temporal dynamics. Our work demonstrates that realistic climate fluctuations are able to (i) induce the coexistence of dynamic behaviors that would be incompatible in a purely deterministic system and (ii) drive ice stream flow away from the regime expected in a steady climate. We conclude that environmental noise appears to be crucial to interpreting the past behavior of ice sheets, as well as to predicting their future evolution.

  19. Stochastic ice stream dynamics

    PubMed Central

    Bertagni, Matteo Bernard; Ridolfi, Luca

    2016-01-01

    Ice streams are narrow corridors of fast-flowing ice that constitute the arterial drainage network of ice sheets. Therefore, changes in ice stream flow are key to understanding paleoclimate, sea level changes, and rapid disintegration of ice sheets during deglaciation. The dynamics of ice flow are tightly coupled to the climate system through atmospheric temperature and snow recharge, which are known exhibit stochastic variability. Here we focus on the interplay between stochastic climate forcing and ice stream temporal dynamics. Our work demonstrates that realistic climate fluctuations are able to (i) induce the coexistence of dynamic behaviors that would be incompatible in a purely deterministic system and (ii) drive ice stream flow away from the regime expected in a steady climate. We conclude that environmental noise appears to be crucial to interpreting the past behavior of ice sheets, as well as to predicting their future evolution. PMID:27457960

  20. Methodology for Stochastic Modeling.

    DTIC Science & Technology

    1985-01-01

    AD-AISS 851 METHODOLOGY FOR STOCHASTIC MODELING(U) ARMY MATERIEL 11 SYSTEMS ANALYSIS ACTIYITY ABERDEEN PROVING GROUND MD H E COHEN JAN 95 RNSAA-TR-41...FORM T REPORT NUMBER 2. GOVT ACCESSION NO. 3. RECIPIENT’$ CATALOG NUMBER 4. TITLE (and Subtitle) S. TYPE OF REPORT & PERIOD COVERED Methodology for...autoregression models, moving average models, ARMA, adaptive modeling, covariance methods , singular value decom- position, order determination rational

  1. Entropy of stochastic flows

    SciTech Connect

    Dorogovtsev, Andrei A

    2010-06-29

    For sets in a Hilbert space the concept of quadratic entropy is introduced. It is shown that this entropy is finite for the range of a stochastic flow of Brownian particles on R. This implies, in particular, the fact that the total time of the free travel in the Arratia flow of all particles that started from a bounded interval is finite. Bibliography: 10 titles.

  2. Stochastic Thermodynamics of Learning

    NASA Astrophysics Data System (ADS)

    Goldt, Sebastian; Seifert, Udo

    2017-01-01

    Virtually every organism gathers information about its noisy environment and builds models from those data, mostly using neural networks. Here, we use stochastic thermodynamics to analyze the learning of a classification rule by a neural network. We show that the information acquired by the network is bounded by the thermodynamic cost of learning and introduce a learning efficiency η ≤1 . We discuss the conditions for optimal learning and analyze Hebbian learning in the thermodynamic limit.

  3. Stochastic disks that roll

    NASA Astrophysics Data System (ADS)

    Holmes-Cerfon, Miranda

    2016-11-01

    We study a model of rolling particles subject to stochastic fluctuations, which may be relevant in systems of nano- or microscale particles where rolling is an approximation for strong static friction. We consider the simplest possible nontrivial system: a linear polymer of three disks constrained to remain in contact and immersed in an equilibrium heat bath so the internal angle of the polymer changes due to stochastic fluctuations. We compare two cases: one where the disks can slide relative to each other and the other where they are constrained to roll, like gears. Starting from the Langevin equations with arbitrary linear velocity constraints, we use formal homogenization theory to derive the overdamped equations that describe the process in configuration space only. The resulting dynamics have the formal structure of a Brownian motion on a Riemannian or sub-Riemannian manifold, depending on if the velocity constraints are holonomic or nonholonomic. We use this to compute the trimer's equilibrium distribution with and without the rolling constraints. Surprisingly, the two distributions are different. We suggest two possible interpretations of this result: either (i) dry friction (or other dissipative, nonequilibrium forces) changes basic thermodynamic quantities like the free energy of a system, a statement that could be tested experimentally, or (ii) as a lesson in modeling rolling or friction more generally as a velocity constraint when stochastic fluctuations are present. In the latter case, we speculate there could be a "roughness" entropy whose inclusion as an effective force could compensate the constraint and preserve classical Boltzmann statistics. Regardless of the interpretation, our calculation shows the word "rolling" must be used with care when stochastic fluctuations are present.

  4. Hybrid approaches for multiple-species stochastic reaction–diffusion models

    SciTech Connect

    Spill, Fabian; Guerrero, Pilar; Alarcon, Tomas; Maini, Philip K.; Byrne, Helen

    2015-10-15

    Reaction–diffusion models are used to describe systems in fields as diverse as physics, chemistry, ecology and biology. The fundamental quantities in such models are individual entities such as atoms and molecules, bacteria, cells or animals, which move and/or react in a stochastic manner. If the number of entities is large, accounting for each individual is inefficient, and often partial differential equation (PDE) models are used in which the stochastic behaviour of individuals is replaced by a description of the averaged, or mean behaviour of the system. In some situations the number of individuals is large in certain regions and small in others. In such cases, a stochastic model may be inefficient in one region, and a PDE model inaccurate in another. To overcome this problem, we develop a scheme which couples a stochastic reaction–diffusion system in one part of the domain with its mean field analogue, i.e. a discretised PDE model, in the other part of the domain. The interface in between the two domains occupies exactly one lattice site and is chosen such that the mean field description is still accurate there. In this way errors due to the flux between the domains are small. Our scheme can account for multiple dynamic interfaces separating multiple stochastic and deterministic domains, and the coupling between the domains conserves the total number of particles. The method preserves stochastic features such as extinction not observable in the mean field description, and is significantly faster to simulate on a computer than the pure stochastic model. - Highlights: • A novel hybrid stochastic/deterministic reaction–diffusion simulation method is given. • Can massively speed up stochastic simulations while preserving stochastic effects. • Can handle multiple reacting species. • Can handle moving boundaries.

  5. Stochastic Quantization of Instantons

    NASA Astrophysics Data System (ADS)

    Grandati, Y.; Bérard, A.; Grangé, P.

    1996-03-01

    The method of Parisi and Wu to quantize classical fields is applied to instanton solutionsϕIof euclidian non-linear theory in one dimension. The solutionϕεof the corresponding Langevin equation is built through a singular perturbative expansion inε=ℏ1/2in the frame of the center of mass of the instanton, where the differenceϕε-ϕIcarries only fluctuations of the instanton form. The relevance of the method is shown for the stochasticK dVequation with uniform noise in space: the exact solution usually obtained by the inverse scattering method is retrieved easily by the singular expansion. A general diagrammatic representation of the solution is then established which makes a thorough use of regrouping properties of stochastic diagrams derived in scalar field theory. Averaging over the noise and in the limit of infinite stochastic time, we obtain explicit expressions for the first two orders inεof the perturbed instanton and of its Green function. Specializing to the Sine-Gordon andϕ4models, the first anharmonic correction is obtained analytically. The calculation is carried to second order for theϕ4model, showing good convergence.

  6. A retrodictive stochastic simulation algorithm

    SciTech Connect

    Vaughan, T.G. Drummond, P.D.; Drummond, A.J.

    2010-05-20

    In this paper we describe a simple method for inferring the initial states of systems evolving stochastically according to master equations, given knowledge of the final states. This is achieved through the use of a retrodictive stochastic simulation algorithm which complements the usual predictive stochastic simulation approach. We demonstrate the utility of this new algorithm by applying it to example problems, including the derivation of likely ancestral states of a gene sequence given a Markovian model of genetic mutation.

  7. Portfolio Optimization with Stochastic Dividends and Stochastic Volatility

    ERIC Educational Resources Information Center

    Varga, Katherine Yvonne

    2015-01-01

    We consider an optimal investment-consumption portfolio optimization model in which an investor receives stochastic dividends. As a first problem, we allow the drift of stock price to be a bounded function. Next, we consider a stochastic volatility model. In each problem, we use the dynamic programming method to derive the Hamilton-Jacobi-Bellman…

  8. Stochastic thermodynamics of resetting

    NASA Astrophysics Data System (ADS)

    Fuchs, Jaco; Goldt, Sebastian; Seifert, Udo

    2016-03-01

    Stochastic dynamics with random resetting leads to a non-equilibrium steady state. Here, we consider the thermodynamics of resetting by deriving the first and second law for resetting processes far from equilibrium. We identify the contributions to the entropy production of the system which arise due to resetting and show that they correspond to the rate with which information is either erased or created. Using Landauer's principle, we derive a bound on the amount of work that is required to maintain a resetting process. We discuss different regimes of resetting, including a Maxwell demon scenario where heat is extracted from a bath at constant temperature.

  9. Stochastic ontogenetic growth model

    NASA Astrophysics Data System (ADS)

    West, B. J.; West, D.

    2012-02-01

    An ontogenetic growth model (OGM) for a thermodynamically closed system is generalized to satisfy both the first and second law of thermodynamics. The hypothesized stochastic ontogenetic growth model (SOGM) is shown to entail the interspecies allometry relation by explicitly averaging the basal metabolic rate and the total body mass over the steady-state probability density for the total body mass (TBM). This is the first derivation of the interspecies metabolic allometric relation from a dynamical model and the asymptotic steady-state distribution of the TBM is fit to data and shown to be inverse power law.

  10. Stochastic processes in cosmology

    NASA Astrophysics Data System (ADS)

    Cáceres, Manuel O.; Diaz, Mario C.; Pullin, Jorge A.

    1987-08-01

    The behavior of a radiation filled de Sitter universe in which the equation of state is perturbed by a stochastic term is studied. The corresponding two-dimensional Fokker-Planck equation is solved. The finiteness of the cosmological constant appears to be a necessary condition for the stability of the model which undergoes an exponentially expanding state. Present address: Facultad de Matemática Astronomía y Física, Universidad Nacional de Córdoba, Laprida 854, 5000 Códoba, Argentina.

  11. Coupling stochastic PDEs

    NASA Astrophysics Data System (ADS)

    Hairer, Martin

    2006-03-01

    We consider a class of parabolic stochastic PDEs driven by white noise in time, and we are interested in showing ergodicity for some cases where the noise is degenerate, i.e., acts only on part of the equation. In some cases where the standard Strong Feller / Irreducibility argument fails, one can nevertheless implement a coupling construction that ensures uniqueness of the invariant measure. We focus on the example of the complex Ginzburg-Landau equation driven by real space-time white noise.

  12. Application of Stochastic Radiative Transfer Theory to the ARM Cloud-Radiative Parameterization Problem

    SciTech Connect

    Veron, Dana E

    2009-03-12

    This project had two primary goals: 1) development of stochastic radiative transfer as a parameterization that could be employed in an AGCM environment, and 2) exploration of the stochastic approach as a means for representing shortwave radiative transfer through mixed-phase layer clouds. To achieve these goals, an analysis of the performance of the stochastic approach was performed, a simple stochastic cloud-radiation parameterization for an AGCM was developed and tested, a statistical description of Arctic mixed phase clouds was developed and the appropriateness of stochastic approach for representing radiative transfer through mixed-phase clouds was assessed. Significant progress has been made in all of these areas and is detailed below.

  13. Application of Stochastic Radiative Transfer Theory to the ARM Cloud-Radiative Parameterization Problem

    SciTech Connect

    Dana E. Veron

    2012-04-09

    This project had two primary goals: (1) development of stochastic radiative transfer as a parameterization that could be employed in an AGCM environment, and (2) exploration of the stochastic approach as a means for representing shortwave radiative transfer through mixed-phase layer clouds. To achieve these goals, climatology of cloud properties was developed at the ARM CART sites, an analysis of the performance of the stochastic approach was performed, a simple stochastic cloud-radiation parameterization for an AGCM was developed and tested, a statistical description of Arctic mixed phase clouds was developed and the appropriateness of stochastic approach for representing radiative transfer through mixed-phase clouds was assessed. Significant progress has been made in all of these areas and is detailed in the final report.

  14. Diffusion approximations to the chemical master equation only have a consistent stochastic thermodynamics at chemical equilibrium

    SciTech Connect

    Horowitz, Jordan M.

    2015-07-28

    The stochastic thermodynamics of a dilute, well-stirred mixture of chemically reacting species is built on the stochastic trajectories of reaction events obtained from the chemical master equation. However, when the molecular populations are large, the discrete chemical master equation can be approximated with a continuous diffusion process, like the chemical Langevin equation or low noise approximation. In this paper, we investigate to what extent these diffusion approximations inherit the stochastic thermodynamics of the chemical master equation. We find that a stochastic-thermodynamic description is only valid at a detailed-balanced, equilibrium steady state. Away from equilibrium, where there is no consistent stochastic thermodynamics, we show that one can still use the diffusive solutions to approximate the underlying thermodynamics of the chemical master equation.

  15. Diffusion approximations to the chemical master equation only have a consistent stochastic thermodynamics at chemical equilibrium.

    PubMed

    Horowitz, Jordan M

    2015-07-28

    The stochastic thermodynamics of a dilute, well-stirred mixture of chemically reacting species is built on the stochastic trajectories of reaction events obtained from the chemical master equation. However, when the molecular populations are large, the discrete chemical master equation can be approximated with a continuous diffusion process, like the chemical Langevin equation or low noise approximation. In this paper, we investigate to what extent these diffusion approximations inherit the stochastic thermodynamics of the chemical master equation. We find that a stochastic-thermodynamic description is only valid at a detailed-balanced, equilibrium steady state. Away from equilibrium, where there is no consistent stochastic thermodynamics, we show that one can still use the diffusive solutions to approximate the underlying thermodynamics of the chemical master equation.

  16. The generalized Langevin equation revisited: Analytical expressions for the persistence dynamics of a viscous fluid under a time dependent external force

    NASA Astrophysics Data System (ADS)

    Olivares-Rivas, Wilmer; Colmenares, Pedro J.

    2016-09-01

    The non-static generalized Langevin equation and its corresponding Fokker-Planck equation for the position of a viscous fluid particle were solved in closed form for a time dependent external force. Its solution for a constant external force was obtained analytically. The non-Markovian stochastic differential equation, associated to the dynamics of the position under a colored noise, was then applied to the description of the dynamics and persistence time of particles constrained within absorbing barriers. Comparisons with molecular dynamics were very satisfactory.

  17. Descriptive thermodynamics

    NASA Astrophysics Data System (ADS)

    Ford, David; Huntsman, Steven

    2006-06-01

    Thermodynamics (in concert with its sister discipline, statistical physics) can be regarded as a data reduction scheme based on partitioning a total system into a subsystem and a bath that weakly interact with each other. Whereas conventionally, the systems investigated require this form of data reduction in order to facilitate prediction, a different problem also occurs, in the context of communication networks, markets, etc. Such “empirically accessible” systems typically overwhelm observers with the sort of information that in the case of (say) a gas is effectively unobtainable. What is required for such complex interacting systems is not prediction (this may be impossible when humans besides the observer are responsible for the interactions) but rather, description as a route to understanding. Still, the need for a thermodynamical data reduction scheme remains. In this paper, we show how an empirical temperature can be computed for finite, empirically accessible systems, and further outline how this construction allows the age-old science of thermodynamics to be fruitfully applied to them.

  18. On the efficacy of stochastic collocation, stochastic Galerkin, and stochastic reduced order models for solving stochastic problems

    DOE PAGES

    Richard V. Field, Jr.; Emery, John M.; Grigoriu, Mircea Dan

    2015-05-19

    The stochastic collocation (SC) and stochastic Galerkin (SG) methods are two well-established and successful approaches for solving general stochastic problems. A recently developed method based on stochastic reduced order models (SROMs) can also be used. Herein we provide a comparison of the three methods for some numerical examples; our evaluation only holds for the examples considered in the paper. The purpose of the comparisons is not to criticize the SC or SG methods, which have proven very useful for a broad range of applications, nor is it to provide overall ratings of these methods as compared to the SROM method.more » Furthermore, our objectives are to present the SROM method as an alternative approach to solving stochastic problems and provide information on the computational effort required by the implementation of each method, while simultaneously assessing their performance for a collection of specific problems.« less

  19. On the efficacy of stochastic collocation, stochastic Galerkin, and stochastic reduced order models for solving stochastic problems

    SciTech Connect

    Richard V. Field, Jr.; Emery, John M.; Grigoriu, Mircea Dan

    2015-05-19

    The stochastic collocation (SC) and stochastic Galerkin (SG) methods are two well-established and successful approaches for solving general stochastic problems. A recently developed method based on stochastic reduced order models (SROMs) can also be used. Herein we provide a comparison of the three methods for some numerical examples; our evaluation only holds for the examples considered in the paper. The purpose of the comparisons is not to criticize the SC or SG methods, which have proven very useful for a broad range of applications, nor is it to provide overall ratings of these methods as compared to the SROM method. Furthermore, our objectives are to present the SROM method as an alternative approach to solving stochastic problems and provide information on the computational effort required by the implementation of each method, while simultaneously assessing their performance for a collection of specific problems.

  20. Stochastic simulation of transport phenomena

    SciTech Connect

    Wedgewood, L.E.; Geurts, K.R.

    1995-10-01

    In this paper, four examples are given to demonstrate how stochastic simulations can be used as a method to obtain numerical solutions to transport problems. The problems considered are two-dimensional heat conduction, mass diffusion with reaction, the start-up of Poiseuille flow, and Couette flow of a suspension of Hookean dumbbells. The first three examples are standard problems with well-known analytic solutions which can be used to verify the results of the stochastic simulation. The fourth example combines a Brownian dynamics simulation for Hookean dumbbells, a crude model of a dilute polymer suspension, and a stochastic simulation for the suspending, Newtonian fluid. These examples illustrate appropriate methods for handling source/sink terms and initial and boundary conditions. The stochastic simulation results compare well with the analytic solutions and other numerical solutions. The goal of this paper is to demonstrate the wide applicability of stochastic simulation as a numerical method for transport problems.

  1. Variance decomposition in stochastic simulators

    SciTech Connect

    Le Maître, O. P.; Knio, O. M.; Moraes, A.

    2015-06-28

    This work aims at the development of a mathematical and computational approach that enables quantification of the inherent sources of stochasticity and of the corresponding sensitivities in stochastic simulations of chemical reaction networks. The approach is based on reformulating the system dynamics as being generated by independent standardized Poisson processes. This reformulation affords a straightforward identification of individual realizations for the stochastic dynamics of each reaction channel, and consequently a quantitative characterization of the inherent sources of stochasticity in the system. By relying on the Sobol-Hoeffding decomposition, the reformulation enables us to perform an orthogonal decomposition of the solution variance. Thus, by judiciously exploiting the inherent stochasticity of the system, one is able to quantify the variance-based sensitivities associated with individual reaction channels, as well as the importance of channel interactions. Implementation of the algorithms is illustrated in light of simulations of simplified systems, including the birth-death, Schlögl, and Michaelis-Menten models.

  2. Stochastic Mean-Field Dynamics For Nuclear Collisions

    SciTech Connect

    Ayik, Sakir

    2008-11-11

    We discuss a stochastic approach to improve description of nuclear dynamics beyond the mean-field approximation at low energies. For small amplitude fluctuations, this approach gives a result for the dispersion of a one-body observable that is identical to the result obtained previously through a variational approach. Furthermore, it incorporates one-body dissipation and fluctuation mechanisms in accordance with quantal fluctuation-dissipation relation.

  3. Stabilization of the stochastically forced equilibria for nonlinear discrete-time systems with incomplete information

    NASA Astrophysics Data System (ADS)

    Ryashko, Lev

    2015-11-01

    A stabilization problem of the equilibrium of stochastically forced nonlinear discrete-time system with incomplete information is considered. Our approach uses a regulator which synthesizes the required stochastic sensitivity of the equilibrium. Mathematically, this problem is reduced to the solution of some quadratic matrix equations. A description of attainability sets and algorithms for regulators design is given. The general results are applied to the suppression of unwanted large-amplitude oscillations around the equilibria of the stochastically forced Verhulst model with noisy observations.

  4. Stabilization of the stochastically forced equilibria for nonlinear discrete-time systems with incomplete information

    SciTech Connect

    Ryashko, Lev

    2015-11-30

    A stabilization problem of the equilibrium of stochastically forced nonlinear discrete-time system with incomplete information is considered. Our approach uses a regulator which synthesizes the required stochastic sensitivity of the equilibrium. Mathematically, this problem is reduced to the solution of some quadratic matrix equations. A description of attainability sets and algorithms for regulators design is given. The general results are applied to the suppression of unwanted large-amplitude oscillations around the equilibria of the stochastically forced Verhulst model with noisy observations.

  5. Minimal representation of matrix valued white stochastic processes and U-D factorisation of algorithms for optimal control

    NASA Astrophysics Data System (ADS)

    Van Willigenburg, L. Gerard; De Koning, Willem L.

    2013-02-01

    Two different descriptions are used in the literature to formulate the optimal dynamic output feedback control problem for linear dynamical systems with white stochastic parameters and quadratic criteria, called the optimal compensation problem. One describes the matrix valued white stochastic processes involved, using a sum of deterministic matrices each one multiplied by a scalar stochastic process that is independent of the others. Another, that is more general and concise, uses Kronecker products instead. This article relates the statistics of both descriptions and shows their advantages and disadvantages. As to the first description, an important result that comes out is the minimum number of matrices multiplied by scalar, independent, stochastic processes needed to represent a certain matrix valued white stochastic process, together with an associated minimal representation. As to the second description, an important result concerns the generation of all Kronecker products that represent relevant statistics. Both results facilitate the specification of statistics of systems with white stochastic parameters. The second part of this article further exploits these results to perform an U-D factorisation of an algorithm to compute optimal dynamic output feedback controllers (optimal compensators) for linear discrete-time systems with white stochastic parameters and quadratic sum criteria. U-D factorisation of this type of algorithm is new. By solving several numerical examples, the U-D factored algorithm is compared with a conventional algorithm.

  6. Hybrid stochastic simplifications for multiscale gene networks

    PubMed Central

    Crudu, Alina; Debussche, Arnaud; Radulescu, Ovidiu

    2009-01-01

    Background Stochastic simulation of gene networks by Markov processes has important applications in molecular biology. The complexity of exact simulation algorithms scales with the number of discrete jumps to be performed. Approximate schemes reduce the computational time by reducing the number of simulated discrete events. Also, answering important questions about the relation between network topology and intrinsic noise generation and propagation should be based on general mathematical results. These general results are difficult to obtain for exact models. Results We propose a unified framework for hybrid simplifications of Markov models of multiscale stochastic gene networks dynamics. We discuss several possible hybrid simplifications, and provide algorithms to obtain them from pure jump processes. In hybrid simplifications, some components are discrete and evolve by jumps, while other components are continuous. Hybrid simplifications are obtained by partial Kramers-Moyal expansion [1-3] which is equivalent to the application of the central limit theorem to a sub-model. By averaging and variable aggregation we drastically reduce simulation time and eliminate non-critical reactions. Hybrid and averaged simplifications can be used for more effective simulation algorithms and for obtaining general design principles relating noise to topology and time scales. The simplified models reproduce with good accuracy the stochastic properties of the gene networks, including waiting times in intermittence phenomena, fluctuation amplitudes and stationary distributions. The methods are illustrated on several gene network examples. Conclusion Hybrid simplifications can be used for onion-like (multi-layered) approaches to multi-scale biochemical systems, in which various descriptions are used at various scales. Sets of discrete and continuous variables are treated with different methods and are coupled together in a physically justified approach. PMID:19735554

  7. Bunched beam stochastic cooling

    SciTech Connect

    Wei, Jie.

    1992-01-01

    The scaling laws for bunched-beam stochastic cooling has been derived in terms of the optimum cooling rate and the mixing condition. In the case that particles occupy the entire sinusoidal rf bucket, the optimum cooling rate of the bunched beam is shown to be similar to that predicted from the coasting-beam theory using a beam of the same average density and mixing factor. However, in the case that particles occupy only the center of the bucket, the optimum rate decrease in proportion to the ratio of the bunch area to the bucket area. The cooling efficiency can be significantly improved if the synchrotron side-band spectrum is effectively broadened, e.g. by the transverse tune spread or by using a double rf system.

  8. Bunched beam stochastic cooling

    SciTech Connect

    Wei, Jie

    1992-09-01

    The scaling laws for bunched-beam stochastic cooling has been derived in terms of the optimum cooling rate and the mixing condition. In the case that particles occupy the entire sinusoidal rf bucket, the optimum cooling rate of the bunched beam is shown to be similar to that predicted from the coasting-beam theory using a beam of the same average density and mixing factor. However, in the case that particles occupy only the center of the bucket, the optimum rate decrease in proportion to the ratio of the bunch area to the bucket area. The cooling efficiency can be significantly improved if the synchrotron side-band spectrum is effectively broadened, e.g. by the transverse tune spread or by using a double rf system.

  9. Stochastic dynamics with a mesoscopic bath

    NASA Astrophysics Data System (ADS)

    Plyukhin, Alexander V.; Schofield, Jeremy

    2001-10-01

    We consider the effects of bath size on the nature of the dynamics and transport properties for two simple models in which the bath is composed of a collinear chain of harmonic oscillators. The first model consists of an untwisted rotating chain (elastic rotor) for which we obtain a non-Markovian equation analogous to the generalized Langevin equation for the rotational degrees of freedom. We demonstrate that the corresponding memory function oscillates with a frequency close to that of the lowest mode of the chain. The second model considered consists of a tagged oscillator in a finite harmonic chain. For this model, we find an additional harmonic force in the generalized Langevin equation for the terminal atom that does not appear in the equation of motion for the semi-infinite chain. It is demonstrated that the force constant for the additional harmonic force scales as 1/N, where N is the number of oscillators in the chain. Using an exact representation for the velocity correlation function, the transport properties of the model are discussed.

  10. Stochastic thermodynamics of chemical reaction networks.

    PubMed

    Schmiedl, Tim; Seifert, Udo

    2007-01-28

    For chemical reaction networks in a dilute solution described by a master equation, the authors define energy and entropy on a stochastic trajectory and develop a consistent nonequilibrium thermodynamic description along a single stochastic trajectory of reaction events. A first-law like energy balance relates internal energy, applied (chemical) work, and dissipated heat for every single reaction. Entropy production along a single trajectory involves a sum over changes in the entropy of the network itself and the entropy of the medium. The latter is given by the exchanged heat identified through the first law. Total entropy production is constrained by an integral fluctuation theorem for networks arbitrarily driven by time-dependent rates and a detailed fluctuation theorem for networks in the steady state. Further exact relations such as a generalized Jarzynski relation and a generalized Clausius inequality are discussed. The authors illustrate these results for a three-species cyclic reaction network which exhibits nonequilibrium steady states as well as transitions between different steady states.

  11. Recent Developments in Linear Stochastic Electrodynamics

    NASA Astrophysics Data System (ADS)

    de la Peña, L.; Cetto, A. M.

    2006-01-01

    A detailed analysis of stochastic electrodynamics (SED) as a foundation for quantum mechanics has shown that the reasons for its failure in the case of nonlinear forces are not to be ascribed to the founding principles of the theory but to the approximation methods introduced, particularly the use of the Fokker-Planck approximation and perturbation theory. To recover the intrinsic possibilities of SED a new, non perturbative approach has been developed, namely linear stochastic electrodynamics (LSED). We here present the basic principles on which LSED is constructed. The demand that the solutions of the SED problem comply with as few as three principles, each one of which is shown to have a clear physical meaning, leads in a natural way to the quantum mechanical description in its Heisenberg form. We briefly re-examine some of the most often discussed conceptual problems of quantum mechanics from the point of view offered by the new theory and show that it offers well defined and clear physical anwers to them, within a realist and causal perspective. To conclude we add brief comments on a couple of predictions of the theory, the test of which could eventually lead to its validation or refutation.

  12. The stochastic search dynamics of interneuron migration.

    PubMed

    Britto, Joanne M; Johnston, Leigh A; Tan, Seong-Seng

    2009-08-05

    Migration is a dynamic process in which a cell searches the environment and translates acquired information into somal advancement. In particular, interneuron migration during development is accomplished by two distinct processes: the extension of neurites tipped with growth cones; and nucleus translocation, termed nucleokinesis. The primary purpose of our study is to investigate neurite branching and nucleokinesis using high-resolution time-lapse confocal microscopy and computational modeling. We demonstrate that nucleokinesis is accurately modeled by a spring-dashpot system and that neurite branching is independent of the nucleokinesis event, and displays the dynamics of a stochastic birth-death process. This is in contrast to traditional biological descriptions, which suggest a closer relationship between the two migratory mechanisms. Our models are validated on independent data sets acquired using two different imaging protocols, and are shown to be robust to alterations in guidance cues and cellular migratory mechanisms, through treatment with brain-derived neurotrophic factor, neurotrophin-4, and blebbistatin. We postulate that the stochastic branch dynamics exhibited by interneurons undergoing guidance-directed migration permit efficient exploration of the environment.

  13. Stochastic reinforcement benefits skill acquisition.

    PubMed

    Dayan, Eran; Averbeck, Bruno B; Richmond, Barry J; Cohen, Leonardo G

    2014-02-14

    Learning complex skills is driven by reinforcement, which facilitates both online within-session gains and retention of the acquired skills. Yet, in ecologically relevant situations, skills are often acquired when mapping between actions and rewarding outcomes is unknown to the learning agent, resulting in reinforcement schedules of a stochastic nature. Here we trained subjects on a visuomotor learning task, comparing reinforcement schedules with higher, lower, or no stochasticity. Training under higher levels of stochastic reinforcement benefited skill acquisition, enhancing both online gains and long-term retention. These findings indicate that the enhancing effects of reinforcement on skill acquisition depend on reinforcement schedules.

  14. Stochastic fluctuations of the synaptic function.

    PubMed

    Ventriglia, Francesco; Di Maio, Vito

    2002-01-01

    The peak amplitudes of the quantal Excitatory Post Synaptic Currents in single hippocampal synapses show a large variability. Here, we present the results of a mathematical, computational investigation on the main sources of this variability. A detailed description of the synaptic cleft, rigorously based on empirically-derived parameters, was used. By using a Brownian motion model of neurotransmitter molecule diffusion, quantal EPSCs were computed by a simple kinetic schema of AMPA receptor dynamics. Our results show that the lack of saturation of AMPA receptors obtained in these conditions, combined with stochastic variations in basic presynaptic elements, such as the vesicle volume, the vesicle docking position, and the vesicle neurotransmitter concentration can explain almost the entire range of EPSC variability experimentally observed.

  15. Stochastic model of tumor-induced angiogenesis: Ensemble averages and deterministic equations

    NASA Astrophysics Data System (ADS)

    Terragni, F.; Carretero, M.; Capasso, V.; Bonilla, L. L.

    2016-02-01

    A recent conceptual model of tumor-driven angiogenesis including branching, elongation, and anastomosis of blood vessels captures some of the intrinsic multiscale structures of this complex system, yet allowing one to extract a deterministic integro-partial-differential description of the vessel tip density [Phys. Rev. E 90, 062716 (2014), 10.1103/PhysRevE.90.062716]. Here we solve the stochastic model, show that ensemble averages over many realizations correspond to the deterministic equations, and fit the anastomosis rate coefficient so that the total number of vessel tips evolves similarly in the deterministic and ensemble-averaged stochastic descriptions.

  16. Statistical validation of stochastic models

    SciTech Connect

    Hunter, N.F.; Barney, P.; Paez, T.L.; Ferregut, C.; Perez, L.

    1996-12-31

    It is common practice in structural dynamics to develop mathematical models for system behavior, and the authors are now capable of developing stochastic models, i.e., models whose parameters are random variables. Such models have random characteristics that are meant to simulate the randomness in characteristics of experimentally observed systems. This paper suggests a formal statistical procedure for the validation of mathematical models of stochastic systems when data taken during operation of the stochastic system are available. The statistical characteristics of the experimental system are obtained using the bootstrap, a technique for the statistical analysis of non-Gaussian data. The authors propose a procedure to determine whether or not a mathematical model is an acceptable model of a stochastic system with regard to user-specified measures of system behavior. A numerical example is presented to demonstrate the application of the technique.

  17. CERENA: ChEmical REaction Network Analyzer--A Toolbox for the Simulation and Analysis of Stochastic Chemical Kinetics.

    PubMed

    Kazeroonian, Atefeh; Fröhlich, Fabian; Raue, Andreas; Theis, Fabian J; Hasenauer, Jan

    2016-01-01

    Gene expression, signal transduction and many other cellular processes are subject to stochastic fluctuations. The analysis of these stochastic chemical kinetics is important for understanding cell-to-cell variability and its functional implications, but it is also challenging. A multitude of exact and approximate descriptions of stochastic chemical kinetics have been developed, however, tools to automatically generate the descriptions and compare their accuracy and computational efficiency are missing. In this manuscript we introduced CERENA, a toolbox for the analysis of stochastic chemical kinetics using Approximations of the Chemical Master Equation solution statistics. CERENA implements stochastic simulation algorithms and the finite state projection for microscopic descriptions of processes, the system size expansion and moment equations for meso- and macroscopic descriptions, as well as the novel conditional moment equations for a hybrid description. This unique collection of descriptions in a single toolbox facilitates the selection of appropriate modeling approaches. Unlike other software packages, the implementation of CERENA is completely general and allows, e.g., for time-dependent propensities and non-mass action kinetics. By providing SBML import, symbolic model generation and simulation using MEX-files, CERENA is user-friendly and computationally efficient. The availability of forward and adjoint sensitivity analyses allows for further studies such as parameter estimation and uncertainty analysis. The MATLAB code implementing CERENA is freely available from http://cerenadevelopers.github.io/CERENA/.

  18. Adaptive and Optimal Control of Stochastic Dynamical Systems

    DTIC Science & Technology

    2015-09-14

    control and stochastic differential games . Stochastic linear-quadratic, continuous time, stochastic control problems are solved for systems with noise...control problems for systems with arbitrary correlated n 15. SUBJECT TERMS Adaptive control, optimal control, stochastic differential games 16. SECURITY...explicit results have been obtained for problems of stochastic control and stochastic differential games . Stochastic linear- quadratic, continuous time

  19. Stochastic Models of Polymer Systems

    DTIC Science & Technology

    2016-01-01

    algorithms for big data applications . (2) We studied stochastic dynamics of polymer systems in the mean field limit. (3) We studied noisy Hegselmann-Krause...DISTRIBUTION AVAILIBILITY STATEMENT 6. AUTHORS 7. PERFORMING ORGANIZATION NAMES AND ADDRESSES 15. SUBJECT TERMS b. ABSTRACT 2. REPORT TYPE 17. LIMITATION...Distribution Unlimited Final Report: Stochastic Models of Polymer Systems The views, opinions and/or findings contained in this report are those of the

  20. Stochastic roots of growth phenomena

    NASA Astrophysics Data System (ADS)

    De Lauro, E.; De Martino, S.; De Siena, S.; Giorno, V.

    2014-05-01

    We show that the Gompertz equation describes the evolution in time of the median of a geometric stochastic process. Therefore, we induce that the process itself generates the growth. This result allows us further to exploit a stochastic variational principle to take account of self-regulation of growth through feedback of relative density variations. The conceptually well defined framework so introduced shows its usefulness by suggesting a form of control of growth by exploiting external actions.

  1. The stochastic dance of early HIV infection

    NASA Astrophysics Data System (ADS)

    Merrill, Stephen J.

    2005-12-01

    The stochastic nature of early HIV infection is described in a series of models, each of which captures aspects of the dance of HIV during the early stages of infection. It is to this highly variable target that the immune response must respond. The adaptability of the various components of the immune response is an important aspect of the system's operation, as the nature of the pathogens that the response will be required to respond to and the order in which those responses must be made cannot be known beforehand. As HIV infection has direct influence over cells responsible for the immune response, the dance predicts that the immune response will be also in a variable state of readiness and capability for this task of adaptation. The description of the stochastic dance of HIV here will use the tools of stochastic models, and for the most part, simulation. The justification for this approach is that the early stages and the development of HIV diversity require that the model to be able to describe both individual sample path and patient-to-patient variability. In addition, as early viral dynamics are best described using branching processes, the explosive growth of these models both predicts high variability and rapid response of HIV to changes in system parameters.In this paper, a basic viral growth model based on a time dependent continuous-time branching process is used to describe the growth of HIV infected cells in the macrophage and lymphocyte populations. Immigration from the reservoir population is added to the basic model to describe the incubation time distribution. This distribution is deduced directly from the modeling assumptions and the model of viral growth. A system of two branching processes, one in the infected macrophage population and one in the infected lymphocyte population is used to provide a description of the relationship between the development of HIV diversity as it relates to tropism (host cell preference). The role of the immune

  2. Capture-recapture studies for multiple strata including non-markovian transitions

    USGS Publications Warehouse

    Brownie, C.; Hines, J.E.; Nichols, J.D.; Pollock, K.H.; Hestbeck, J.B.

    1993-01-01

    We consider capture-recapture studies where release and recapture data are available from each of a number of strata on every capture occasion. Strata may, for example, be geographic locations or physiological states. Movement of animals among strata occurs with unknown probabilities, and estimation of these unknown transition probabilities is the objective. We describe a computer routine for carrying out the analysis under a model that assumes Markovian transitions and under reduced parameter versions of this model. We also introduce models that relax the Markovian assumption and allow 'memory' to operate (i.e., allow dependence of the transition probabilities on the previous state). For these models, we sugg st an analysis based on a conditional likelihood approach. Methods are illustrated with data from a large study on Canada geese (Branta canadensis) banded in three geographic regions. The assumption of Markovian transitions is rejected convincingly for these data, emphasizing the importance of the more general models that allow memory.

  3. A non-Markovian model of avalanche gain statistics for a solid-state photomultiplier

    NASA Technical Reports Server (NTRS)

    Laviolette, Randall A.; Stapelbroek, M. G.

    1989-01-01

    A solid-state photomultiplier (SSPM) capable of continously detecting individual photons of wavelength between 0.4 and 28 microns has recently been disclosed (Petroff et al., 1987). The initial response of the SSPM to single photon is a fast, high-amplitude current pulse of between 10,000 and 100,000 electrons. A phenomenological model of the SSPM avalanche process is presented which successfully predicts the shape of the observed pulse-amplitude distribution by including small history-dependent effects on the carrier transport. The model clarifies the consequences of the electric field strength and the scattering of the electrons for the development of the avalanche in the SSPM.

  4. Self-similarity and non-Markovian behavior in traded stock volumes

    NASA Astrophysics Data System (ADS)

    Brown, Frank R.; Pravica, David; Bier, Martin

    2015-11-01

    The volume traded daily for 17 stocks is followed over a period of about half a century. We look at the volume of stocks traded in a certain time interval (day, week, month) and analyze how long that traded volume keeps monotonically increasing or decreasing. On all three times scales we find that the sequence of traded volumes behaves neither like a sequence of independent and identically distributed variables, nor like a Markov sequence. A compressed exponential survival function with the same parameters at all timescales is firmly established. A day with an increase (decrease) of traded volume is most likely followed by a day with a decrease (increase) of traded volume. We show how the apparent self-similarity results because the small day-to-day anticorrelation carries over when larger time intervals are considered. The observed small anticorrelation can be explained as a consequence of market forces and trader reactions.

  5. Publisher's Note: Non-Markovian dynamics of a qubit [Phys. Rev. A 73, 012111 (2006)

    NASA Astrophysics Data System (ADS)

    Maniscalco, Sabrina; Petruccione, Franceso

    2006-02-01

    This paper was published online on 24 January 2006 with an incorrect electronic address in the first author’s byline footnote. The electronic address for the first author should read “sabrina.maniscalco@utu.fi.” The byline footnote has been corrected as of 26 January 2006. The byline footnote is correct in the printed version of the journal.

  6. Publisher's Note: Non-Markovian dynamics of a qubit [Phys. Rev. A 73, 012111 (2006)

    SciTech Connect

    Maniscalco, Sabrina; Petruccione, Franceso

    2006-02-15

    This paper was published online on 24 January 2006 with an incorrect electronic address in the first author's byline footnote. The electronic address for the first author should read 'sabrina.maniscalco at utu.fi'. The byline footnote has been corrected as of 26 January 2006. The byline footnote is correct in the printed version of the journal.

  7. Stochastic cooling in RHIC

    SciTech Connect

    Brennan J. M.; Blaskiewicz, M.; Mernick, K.

    2012-05-20

    The full 6-dimensional [x,x'; y,y'; z,z'] stochastic cooling system for RHIC was completed and operational for the FY12 Uranium-Uranium collider run. Cooling enhances the integrated luminosity of the Uranium collisions by a factor of 5, primarily by reducing the transverse emittances but also by cooling in the longitudinal plane to preserve the bunch length. The components have been deployed incrementally over the past several runs, beginning with longitudinal cooling, then cooling in the vertical planes but multiplexed between the Yellow and Blue rings, next cooling both rings simultaneously in vertical (the horizontal plane was cooled by betatron coupling), and now simultaneous horizontal cooling has been commissioned. The system operated between 5 and 9 GHz and with 3 x 10{sup 8} Uranium ions per bunch and produces a cooling half-time of approximately 20 minutes. The ultimate emittance is determined by the balance between cooling and emittance growth from Intra-Beam Scattering. Specific details of the apparatus and mathematical techniques for calculating its performance have been published elsewhere. Here we report on: the method of operation, results with beam, and comparison of results to simulations.

  8. Stochastic tools hidden behind the empirical dielectric relaxation laws.

    PubMed

    Stanislavsky, Aleksander; Weron, Karina

    2017-03-01

    The paper is devoted to recent advances in stochastic modeling of anomalous kinetic processes observed in dielectric materials which are prominent examples of disordered (complex) systems. Theoretical studies of dynamical properties of 'structures with variations' (Goldenfield and Kadanoff 1999 Science 284 87-9) require application of such mathematical tools-by means of which their random nature can be analyzed and, independently of the details distinguishing various systems (dipolar materials, glasses, semiconductors, liquid crystals, polymers, etc), the empirical universal kinetic patterns can be derived. We begin with a brief survey of the historical background of the dielectric relaxation study. After a short outline of the theoretical ideas providing the random tools applicable to modeling of relaxation phenomena, we present probabilistic implications for the study of the relaxation-rate distribution models. In the framework of the probability distribution of relaxation rates we consider description of complex systems, in which relaxing entities form random clusters interacting with each other and single entities. Then we focus on stochastic mechanisms of the relaxation phenomenon. We discuss the diffusion approach and its usefulness for understanding of anomalous dynamics of relaxing systems. We also discuss extensions of the diffusive approach to systems under tempered random processes. Useful relationships among different stochastic approaches to the anomalous dynamics of complex systems allow us to get a fresh look at this subject. The paper closes with a final discussion on achievements of stochastic tools describing the anomalous time evolution of complex systems.

  9. Stochastic tools hidden behind the empirical dielectric relaxation laws

    NASA Astrophysics Data System (ADS)

    Stanislavsky, Aleksander; Weron, Karina

    2017-03-01

    The paper is devoted to recent advances in stochastic modeling of anomalous kinetic processes observed in dielectric materials which are prominent examples of disordered (complex) systems. Theoretical studies of dynamical properties of ‘structures with variations’ (Goldenfield and Kadanoff 1999 Science 284 87–9) require application of such mathematical tools—by means of which their random nature can be analyzed and, independently of the details distinguishing various systems (dipolar materials, glasses, semiconductors, liquid crystals, polymers, etc), the empirical universal kinetic patterns can be derived. We begin with a brief survey of the historical background of the dielectric relaxation study. After a short outline of the theoretical ideas providing the random tools applicable to modeling of relaxation phenomena, we present probabilistic implications for the study of the relaxation-rate distribution models. In the framework of the probability distribution of relaxation rates we consider description of complex systems, in which relaxing entities form random clusters interacting with each other and single entities. Then we focus on stochastic mechanisms of the relaxation phenomenon. We discuss the diffusion approach and its usefulness for understanding of anomalous dynamics of relaxing systems. We also discuss extensions of the diffusive approach to systems under tempered random processes. Useful relationships among different stochastic approaches to the anomalous dynamics of complex systems allow us to get a fresh look at this subject. The paper closes with a final discussion on achievements of stochastic tools describing the anomalous time evolution of complex systems.

  10. Segmentation of stochastic images with a stochastic random walker method.

    PubMed

    Pätz, Torben; Preusser, Tobias

    2012-05-01

    We present an extension of the random walker segmentation to images with uncertain gray values. Such gray-value uncertainty may result from noise or other imaging artifacts or more general from measurement errors in the image acquisition process. The purpose is to quantify the influence of the gray-value uncertainty onto the result when using random walker segmentation. In random walker segmentation, a weighted graph is built from the image, where the edge weights depend on the image gradient between the pixels. For given seed regions, the probability is evaluated for a random walk on this graph starting at a pixel to end in one of the seed regions. Here, we extend this method to images with uncertain gray values. To this end, we consider the pixel values to be random variables (RVs), thus introducing the notion of stochastic images. We end up with stochastic weights for the graph in random walker segmentation and a stochastic partial differential equation (PDE) that has to be solved. We discretize the RVs and the stochastic PDE by the method of generalized polynomial chaos, combining the recent developments in numerical methods for the discretization of stochastic PDEs and an interactive segmentation algorithm. The resulting algorithm allows for the detection of regions where the segmentation result is highly influenced by the uncertain pixel values. Thus, it gives a reliability estimate for the resulting segmentation, and it furthermore allows determining the probability density function of the segmented object volume.

  11. Accelerated stochastic diffusion processes

    NASA Astrophysics Data System (ADS)

    Garbaczewski, Piotr

    1990-07-01

    We give a purely probabilistic demonstration that all effects of non-random (external, conservative) forces on the diffusion process can be encoded in the Nelson ansatz for the second Newton law. Each random path of the process together with a probabilistic weight carries a phase accumulation (complex valued) weight. Random path summation (integration) of these weights leads to the transition probability density and transition amplitude respectively between two spatial points in a given time interval. The Bohm-Vigier, Fenyes-Nelson-Guerra and Feynman descriptions of the quantum particle behaviours are in fact equivalent.

  12. Stochastic bifurcations caused by multiplicative noise in systems with hard excitement of auto-oscillations

    NASA Astrophysics Data System (ADS)

    Bashkirtseva, Irina; Ryazanova, Tatyana; Ryashko, Lev

    2015-10-01

    We study a stochastic dynamics of systems with hard excitement of auto-oscillations possessing a bistability mode with coexistence of the stable equilibrium and limit cycle. A principal difference in the results of the impact of additive and parametric random disturbances is shown. For the stochastic van der Pol oscillator with increasing parametric noise, qualitative transformations of the probability density function form "crater"-"peak +crater "-"peak" are demonstrated by numerical simulation. An analytical investigation of such P bifurcations is carried out for the stochastic Hopf-like model with hard excitement of self-oscillations. A detailed parametric description of the response of this model on the additive and multiplicative noise and corresponding stochastic bifurcations are presented and discussed.

  13. Stacking with stochastic cooling

    NASA Astrophysics Data System (ADS)

    Caspers, Fritz; Möhl, Dieter

    2004-10-01

    Accumulation of large stacks of antiprotons or ions with the aid of stochastic cooling is more delicate than cooling a constant intensity beam. Basically the difficulty stems from the fact that the optimized gain and the cooling rate are inversely proportional to the number of particles 'seen' by the cooling system. Therefore, to maintain fast stacking, the newly injected batch has to be strongly 'protected' from the Schottky noise of the stack. Vice versa the stack has to be efficiently 'shielded' against the high gain cooling system for the injected beam. In the antiproton accumulators with stacking ratios up to 105 the problem is solved by radial separation of the injection and the stack orbits in a region of large dispersion. An array of several tapered cooling systems with a matched gain profile provides a continuous particle flux towards the high-density stack core. Shielding of the different systems from each other is obtained both through the spatial separation and via the revolution frequencies (filters). In the 'old AA', where the antiproton collection and stacking was done in one single ring, the injected beam was further shielded during cooling by means of a movable shutter. The complexity of these systems is very high. For more modest stacking ratios, one might use azimuthal rather than radial separation of stack and injected beam. Schematically half of the circumference would be used to accept and cool new beam and the remainder to house the stack. Fast gating is then required between the high gain cooling of the injected beam and the low gain stack cooling. RF-gymnastics are used to merge the pre-cooled batch with the stack, to re-create free space for the next injection, and to capture the new batch. This scheme is less demanding for the storage ring lattice, but at the expense of some reduction in stacking rate. The talk reviews the 'radial' separation schemes and also gives some considerations to the 'azimuthal' schemes.

  14. A Stochastic Collocation Algorithm for Uncertainty Analysis

    NASA Technical Reports Server (NTRS)

    Mathelin, Lionel; Hussaini, M. Yousuff; Zang, Thomas A. (Technical Monitor)

    2003-01-01

    This report describes a stochastic collocation method to adequately handle a physically intrinsic uncertainty in the variables of a numerical simulation. For instance, while the standard Galerkin approach to Polynomial Chaos requires multi-dimensional summations over the stochastic basis functions, the stochastic collocation method enables to collapse those summations to a one-dimensional summation only. This report furnishes the essential algorithmic details of the new stochastic collocation method and provides as a numerical example the solution of the Riemann problem with the stochastic collocation method used for the discretization of the stochastic parameters.

  15. General no-go condition for stochastic pumping

    NASA Astrophysics Data System (ADS)

    Maes, Christian; Netočný, Karel; Thomas, Simi R.

    2010-06-01

    The control of chemical dynamics requires understanding the effect of time-dependent transition rates between states of chemomechanical molecular configurations. Pumping refers to generating a net current, e.g., per period in the time dependence, through a cycle of consecutive states. The work of artificial machines or synthesized molecular motors depends on it. In this paper we give short and simple proofs of no-go theorems, some of which appeared before but here with essential extensions to non-Markovian dynamics, including the study of the diffusion limit. It allows to exclude certain protocols in the working of chemical motors where only the depth of the energy well is changed in time and not the barrier height between pairs of states. We also show how pre-existing steady state currents are, in general, modified with a multiplicative factor when this time dependence is turned on.

  16. Hybrid approaches for multiple-species stochastic reaction–diffusion models

    PubMed Central

    Spill, Fabian; Guerrero, Pilar; Alarcon, Tomas; Maini, Philip K.; Byrne, Helen

    2015-01-01

    Reaction–diffusion models are used to describe systems in fields as diverse as physics, chemistry, ecology and biology. The fundamental quantities in such models are individual entities such as atoms and molecules, bacteria, cells or animals, which move and/or react in a stochastic manner. If the number of entities is large, accounting for each individual is inefficient, and often partial differential equation (PDE) models are used in which the stochastic behaviour of individuals is replaced by a description of the averaged, or mean behaviour of the system. In some situations the number of individuals is large in certain regions and small in others. In such cases, a stochastic model may be inefficient in one region, and a PDE model inaccurate in another. To overcome this problem, we develop a scheme which couples a stochastic reaction–diffusion system in one part of the domain with its mean field analogue, i.e. a discretised PDE model, in the other part of the domain. The interface in between the two domains occupies exactly one lattice site and is chosen such that the mean field description is still accurate there. In this way errors due to the flux between the domains are small. Our scheme can account for multiple dynamic interfaces separating multiple stochastic and deterministic domains, and the coupling between the domains conserves the total number of particles. The method preserves stochastic features such as extinction not observable in the mean field description, and is significantly faster to simulate on a computer than the pure stochastic model. PMID:26478601

  17. Hybrid approaches for multiple-species stochastic reaction-diffusion models.

    PubMed

    Spill, Fabian; Guerrero, Pilar; Alarcon, Tomas; Maini, Philip K; Byrne, Helen

    2015-10-15

    Reaction-diffusion models are used to describe systems in fields as diverse as physics, chemistry, ecology and biology. The fundamental quantities in such models are individual entities such as atoms and molecules, bacteria, cells or animals, which move and/or react in a stochastic manner. If the number of entities is large, accounting for each individual is inefficient, and often partial differential equation (PDE) models are used in which the stochastic behaviour of individuals is replaced by a description of the averaged, or mean behaviour of the system. In some situations the number of individuals is large in certain regions and small in others. In such cases, a stochastic model may be inefficient in one region, and a PDE model inaccurate in another. To overcome this problem, we develop a scheme which couples a stochastic reaction-diffusion system in one part of the domain with its mean field analogue, i.e. a discretised PDE model, in the other part of the domain. The interface in between the two domains occupies exactly one lattice site and is chosen such that the mean field description is still accurate there. In this way errors due to the flux between the domains are small. Our scheme can account for multiple dynamic interfaces separating multiple stochastic and deterministic domains, and the coupling between the domains conserves the total number of particles. The method preserves stochastic features such as extinction not observable in the mean field description, and is significantly faster to simulate on a computer than the pure stochastic model.

  18. Hybrid approaches for multiple-species stochastic reaction-diffusion models

    NASA Astrophysics Data System (ADS)

    Spill, Fabian; Guerrero, Pilar; Alarcon, Tomas; Maini, Philip K.; Byrne, Helen

    2015-10-01

    Reaction-diffusion models are used to describe systems in fields as diverse as physics, chemistry, ecology and biology. The fundamental quantities in such models are individual entities such as atoms and molecules, bacteria, cells or animals, which move and/or react in a stochastic manner. If the number of entities is large, accounting for each individual is inefficient, and often partial differential equation (PDE) models are used in which the stochastic behaviour of individuals is replaced by a description of the averaged, or mean behaviour of the system. In some situations the number of individuals is large in certain regions and small in others. In such cases, a stochastic model may be inefficient in one region, and a PDE model inaccurate in another. To overcome this problem, we develop a scheme which couples a stochastic reaction-diffusion system in one part of the domain with its mean field analogue, i.e. a discretised PDE model, in the other part of the domain. The interface in between the two domains occupies exactly one lattice site and is chosen such that the mean field description is still accurate there. In this way errors due to the flux between the domains are small. Our scheme can account for multiple dynamic interfaces separating multiple stochastic and deterministic domains, and the coupling between the domains conserves the total number of particles. The method preserves stochastic features such as extinction not observable in the mean field description, and is significantly faster to simulate on a computer than the pure stochastic model.

  19. Stochastic models: theory and simulation.

    SciTech Connect

    Field, Richard V., Jr.

    2008-03-01

    Many problems in applied science and engineering involve physical phenomena that behave randomly in time and/or space. Examples are diverse and include turbulent flow over an aircraft wing, Earth climatology, material microstructure, and the financial markets. Mathematical models for these random phenomena are referred to as stochastic processes and/or random fields, and Monte Carlo simulation is the only general-purpose tool for solving problems of this type. The use of Monte Carlo simulation requires methods and algorithms to generate samples of the appropriate stochastic model; these samples then become inputs and/or boundary conditions to established deterministic simulation codes. While numerous algorithms and tools currently exist to generate samples of simple random variables and vectors, no cohesive simulation tool yet exists for generating samples of stochastic processes and/or random fields. There are two objectives of this report. First, we provide some theoretical background on stochastic processes and random fields that can be used to model phenomena that are random in space and/or time. Second, we provide simple algorithms that can be used to generate independent samples of general stochastic models. The theory and simulation of random variables and vectors is also reviewed for completeness.

  20. Stochastic simulation in systems biology

    PubMed Central

    Székely, Tamás; Burrage, Kevin

    2014-01-01

    Natural systems are, almost by definition, heterogeneous: this can be either a boon or an obstacle to be overcome, depending on the situation. Traditionally, when constructing mathematical models of these systems, heterogeneity has typically been ignored, despite its critical role. However, in recent years, stochastic computational methods have become commonplace in science. They are able to appropriately account for heterogeneity; indeed, they are based around the premise that systems inherently contain at least one source of heterogeneity (namely, intrinsic heterogeneity). In this mini-review, we give a brief introduction to theoretical modelling and simulation in systems biology and discuss the three different sources of heterogeneity in natural systems. Our main topic is an overview of stochastic simulation methods in systems biology. There are many different types of stochastic methods. We focus on one group that has become especially popular in systems biology, biochemistry, chemistry and physics. These discrete-state stochastic methods do not follow individuals over time; rather they track only total populations. They also assume that the volume of interest is spatially homogeneous. We give an overview of these methods, with a discussion of the advantages and disadvantages of each, and suggest when each is more appropriate to use. We also include references to software implementations of them, so that beginners can quickly start using stochastic methods for practical problems of interest. PMID:25505503

  1. Enhanced algorithms for stochastic programming

    SciTech Connect

    Krishna, A.S.

    1993-09-01

    In this dissertation, we present some of the recent advances made in solving two-stage stochastic linear programming problems of large size and complexity. Decomposition and sampling are two fundamental components of techniques to solve stochastic optimization problems. We describe improvements to the current techniques in both these areas. We studied different ways of using importance sampling techniques in the context of Stochastic programming, by varying the choice of approximation functions used in this method. We have concluded that approximating the recourse function by a computationally inexpensive piecewise-linear function is highly efficient. This reduced the problem from finding the mean of a computationally expensive functions to finding that of a computationally inexpensive function. Then we implemented various variance reduction techniques to estimate the mean of a piecewise-linear function. This method achieved similar variance reductions in orders of magnitude less time than, when we directly applied variance-reduction techniques directly on the given problem. In solving a stochastic linear program, the expected value problem is usually solved before a stochastic solution and also to speed-up the algorithm by making use of the information obtained from the solution of the expected value problem. We have devised a new decomposition scheme to improve the convergence of this algorithm.

  2. Stochastic simulation in systems biology.

    PubMed

    Székely, Tamás; Burrage, Kevin

    2014-11-01

    Natural systems are, almost by definition, heterogeneous: this can be either a boon or an obstacle to be overcome, depending on the situation. Traditionally, when constructing mathematical models of these systems, heterogeneity has typically been ignored, despite its critical role. However, in recent years, stochastic computational methods have become commonplace in science. They are able to appropriately account for heterogeneity; indeed, they are based around the premise that systems inherently contain at least one source of heterogeneity (namely, intrinsic heterogeneity). In this mini-review, we give a brief introduction to theoretical modelling and simulation in systems biology and discuss the three different sources of heterogeneity in natural systems. Our main topic is an overview of stochastic simulation methods in systems biology. There are many different types of stochastic methods. We focus on one group that has become especially popular in systems biology, biochemistry, chemistry and physics. These discrete-state stochastic methods do not follow individuals over time; rather they track only total populations. They also assume that the volume of interest is spatially homogeneous. We give an overview of these methods, with a discussion of the advantages and disadvantages of each, and suggest when each is more appropriate to use. We also include references to software implementations of them, so that beginners can quickly start using stochastic methods for practical problems of interest.

  3. A field test of a simple stochastic radiative transfer model

    SciTech Connect

    Byrne, N.

    1995-09-01

    The problem of determining the effect of clouds on the radiative energy balance of the globe is of well-recognized importance. One can in principle solve the problem for any given configuration of clouds using numerical techniques. This knowledge is not useful however, because of the amount of input data and computer resources required. Besides, we need only the average of the resulting solution over the grid scale of a general circulation model (GCM). Therefore, we are interested in estimating the average of the solutions of such fine-grained problems using only coarse grained data, a science or art called stochastic radiation transfer. Results of the described field test indicate that the stochastic description is a somewhat better fit to the data than is a fractional cloud cover model, but more data are needed. 1 ref., 3 figs.

  4. Mixed quantal-semiquantal dynamics with stochastic particles for backreaction

    SciTech Connect

    Ando, Koji

    2014-10-14

    A mixed quantal-semiquantal theory is presented in which the semiquantal squeezed-state wave packet describes the heavy degrees of freedom. Starting from the mean-field equations of motion that are naturally derived from the time-dependent variational principle, we introduce the stochastic particle description for both the quantal and semiquantal parts in an aim to take into account the interparticle correlation, in particular the “quantum backreaction” beyond the mean-field approximation. A numerical application on a model of O{sub 2} scattering from a Pt surface demonstrates that the proposed scheme gives correct asymptotic behavior of the scattering probability, with improvement over the mixed quantum-classical scheme with Bohmian particles, which is comprehended by comparing the Bohmian and the stochastic trajectories.

  5. Stochastic sensitivity of a bistable energy model for visual perception

    NASA Astrophysics Data System (ADS)

    Pisarchik, Alexander N.; Bashkirtseva, Irina; Ryashko, Lev

    2017-01-01

    Modern trends in physiology, psychology and cognitive neuroscience suggest that noise is an essential component of brain functionality and self-organization. With adequate noise the brain as a complex dynamical system can easily access different ordered states and improve signal detection for decision-making by preventing deadlocks. Using a stochastic sensitivity function approach, we analyze how sensitive equilibrium points are to Gaussian noise in a bistable energy model often used for qualitative description of visual perception. The probability distribution of noise-induced transitions between two coexisting percepts is calculated at different noise intensity and system stability. Stochastic squeezing of the hysteresis range and its transition from positive (bistable regime) to negative (intermittency regime) are demonstrated as the noise intensity increases. The hysteresis is more sensitive to noise in the system with higher stability.

  6. Existence and Uniqueness of Solutions to the Stochastic Porous Media Equations of Saturated Flows

    SciTech Connect

    Ciotir, Ioana

    2010-02-15

    This paper proves the existence and uniqueness of nonnegative solutions for the stochastic porous media equations with multiplicative noise, infinite jump and discontinuous diffusivity function relevant in description of saturation processes in underground water infiltration in a bounded domain of R{sup 3}.

  7. Intrinsic optimization using stochastic nanomagnets

    NASA Astrophysics Data System (ADS)

    Sutton, Brian; Camsari, Kerem Yunus; Behin-Aein, Behtash; Datta, Supriyo

    2017-03-01

    This paper draws attention to a hardware system which can be engineered so that its intrinsic physics is described by the generalized Ising model and can encode the solution to many important NP-hard problems as its ground state. The basic constituents are stochastic nanomagnets which switch randomly between the ±1 Ising states and can be monitored continuously with standard electronics. Their mutual interactions can be short or long range, and their strengths can be reconfigured as needed to solve specific problems and to anneal the system at room temperature. The natural laws of statistical mechanics guide the network of stochastic nanomagnets at GHz speeds through the collective states with an emphasis on the low energy states that represent optimal solutions. As proof-of-concept, we present simulation results for standard NP-complete examples including a 16-city traveling salesman problem using experimentally benchmarked models for spin-transfer torque driven stochastic nanomagnets.

  8. Intrinsic optimization using stochastic nanomagnets

    PubMed Central

    Sutton, Brian; Camsari, Kerem Yunus; Behin-Aein, Behtash; Datta, Supriyo

    2017-01-01

    This paper draws attention to a hardware system which can be engineered so that its intrinsic physics is described by the generalized Ising model and can encode the solution to many important NP-hard problems as its ground state. The basic constituents are stochastic nanomagnets which switch randomly between the ±1 Ising states and can be monitored continuously with standard electronics. Their mutual interactions can be short or long range, and their strengths can be reconfigured as needed to solve specific problems and to anneal the system at room temperature. The natural laws of statistical mechanics guide the network of stochastic nanomagnets at GHz speeds through the collective states with an emphasis on the low energy states that represent optimal solutions. As proof-of-concept, we present simulation results for standard NP-complete examples including a 16-city traveling salesman problem using experimentally benchmarked models for spin-transfer torque driven stochastic nanomagnets. PMID:28295053

  9. Nonlinear optimization for stochastic simulations.

    SciTech Connect

    Johnson, Michael M.; Yoshimura, Ann S.; Hough, Patricia Diane; Ammerlahn, Heidi R.

    2003-12-01

    This report describes research targeting development of stochastic optimization algorithms and their application to mission-critical optimization problems in which uncertainty arises. The first section of this report covers the enhancement of the Trust Region Parallel Direct Search (TRPDS) algorithm to address stochastic responses and the incorporation of the algorithm into the OPT++ optimization library. The second section describes the Weapons of Mass Destruction Decision Analysis Center (WMD-DAC) suite of systems analysis tools and motivates the use of stochastic optimization techniques in such non-deterministic simulations. The third section details a batch programming interface designed to facilitate criteria-based or algorithm-driven execution of system-of-system simulations. The fourth section outlines the use of the enhanced OPT++ library and batch execution mechanism to perform systems analysis and technology trade-off studies in the WMD detection and response problem domain.

  10. Principal axes for stochastic dynamics

    NASA Astrophysics Data System (ADS)

    Vasconcelos, V. V.; Raischel, F.; Haase, M.; Peinke, J.; Wächter, M.; Lind, P. G.; Kleinhans, D.

    2011-09-01

    We introduce a general procedure for directly ascertaining how many independent stochastic sources exist in a complex system modeled through a set of coupled Langevin equations of arbitrary dimension. The procedure is based on the computation of the eigenvalues and the corresponding eigenvectors of local diffusion matrices. We demonstrate our algorithm by applying it to two examples of systems showing Hopf bifurcation. We argue that computing the eigenvectors associated to the eigenvalues of the diffusion matrix at local mesh points in the phase space enables one to define vector fields of stochastic eigendirections. In particular, the eigenvector associated to the lowest eigenvalue defines the path of minimum stochastic forcing in phase space, and a transform to a new coordinate system aligned with the eigenvectors can increase the predictability of the system.

  11. Stochastic determination of matrix determinants.

    PubMed

    Dorn, Sebastian; Ensslin, Torsten A

    2015-07-01

    Matrix determinants play an important role in data analysis, in particular when Gaussian processes are involved. Due to currently exploding data volumes, linear operations-matrices-acting on the data are often not accessible directly but are only represented indirectly in form of a computer routine. Such a routine implements the transformation a data vector undergoes under matrix multiplication. While efficient probing routines to estimate a matrix's diagonal or trace, based solely on such computationally affordable matrix-vector multiplications, are well known and frequently used in signal inference, there is no stochastic estimate for its determinant. We introduce a probing method for the logarithm of a determinant of a linear operator. Our method rests upon a reformulation of the log-determinant by an integral representation and the transformation of the involved terms into stochastic expressions. This stochastic determinant determination enables large-size applications in Bayesian inference, in particular evidence calculations, model comparison, and posterior determination.

  12. Stochastic decision analysis

    NASA Technical Reports Server (NTRS)

    Lacksonen, Thomas A.

    1994-01-01

    Small space flight project design at NASA Langley Research Center goes through a multi-phase process from preliminary analysis to flight operations. The process insures that each system achieves its technical objectives with demonstrated quality and within planned budgets and schedules. A key technical component of early phases is decision analysis, which is a structure procedure for determining the best of a number of feasible concepts based upon project objectives. Feasible system concepts are generated by the designers and analyzed for schedule, cost, risk, and technical measures. Each performance measure value is normalized between the best and worst values and a weighted average score of all measures is calculated for each concept. The concept(s) with the highest scores are retained, while others are eliminated from further analysis. This project automated and enhanced the decision analysis process. Automation of the decision analysis process was done by creating a user-friendly, menu-driven, spreadsheet macro based decision analysis software program. The program contains data entry dialog boxes, automated data and output report generation, and automated output chart generation. The enhancements to the decision analysis process permit stochastic data entry and analysis. Rather than enter single measure values, the designers enter the range and most likely value for each measure and concept. The data can be entered at the system or subsystem level. System level data can be calculated as either sum, maximum, or product functions of the subsystem data. For each concept, the probability distributions are approximated for each measure and the total score for each concept as either constant, triangular, normal, or log-normal distributions. Based on these distributions, formulas are derived for the probability that the concept meets any given constraint, the probability that the concept meets all constraints, and the probability that the concept is within a given

  13. Partial ASL extensions for stochastic programming.

    SciTech Connect

    Gay, David

    2010-03-31

    partially completed extensions for stochastic programming to the AMPL/solver interface library (ASL).modeling and experimenting with stochastic recourse problems. This software is not primarily for military applications

  14. Stochastic Optimization of Complex Systems

    SciTech Connect

    Birge, John R.

    2014-03-20

    This project focused on methodologies for the solution of stochastic optimization problems based on relaxation and penalty methods, Monte Carlo simulation, parallel processing, and inverse optimization. The main results of the project were the development of a convergent method for the solution of models that include expectation constraints as in equilibrium models, improvement of Monte Carlo convergence through the use of a new method of sample batch optimization, the development of new parallel processing methods for stochastic unit commitment models, and the development of improved methods in combination with parallel processing for incorporating automatic differentiation methods into optimization.

  15. Bar shapes and orbital stochasticity

    SciTech Connect

    Athanassoula, E. )

    1990-06-01

    Several independent lines of evidence suggest that the isophotes or isodensities of bars in barred galaxies are not really elliptical in shape but more rectangular. The effect this might have on the orbits in two different types of bar potentials is studied, and it is found that in both cases the percentage of stochastic orbits is much larger when the shapes are more rectangularlike or, equivalently, when the m = 4 components are more important. This can be understood with the help of the Chirikov criterion, which can predict the limit for the onset of global stochasticity. 9 refs.

  16. QB1 - Stochastic Gene Regulation

    SciTech Connect

    Munsky, Brian

    2012-07-23

    Summaries of this presentation are: (1) Stochastic fluctuations or 'noise' is present in the cell - Random motion and competition between reactants, Low copy, quantization of reactants, Upstream processes; (2) Fluctuations may be very important - Cell-to-cell variability, Cell fate decisions (switches), Signal amplification or damping, stochastic resonances; and (3) Some tools are available to mode these - Kinetic Monte Carlo simulations (SSA and variants), Moment approximation methods, Finite State Projection. We will see how modeling these reactions can tell us more about the underlying processes of gene regulation.

  17. Stochastic Kinetics of Nascent RNA

    NASA Astrophysics Data System (ADS)

    Xu, Heng; Skinner, Samuel O.; Sokac, Anna Marie; Golding, Ido

    2016-09-01

    The stochastic kinetics of transcription is typically inferred from the distribution of RNA numbers in individual cells. However, cellular RNA reflects additional processes downstream of transcription, hampering this analysis. In contrast, nascent (actively transcribed) RNA closely reflects the kinetics of transcription. We present a theoretical model for the stochastic kinetics of nascent RNA, which we solve to obtain the probability distribution of nascent RNA per gene. The model allows us to evaluate the kinetic parameters of transcription from single-cell measurements of nascent RNA. The model also predicts surprising discontinuities in the distribution of nascent RNA, a feature which we verify experimentally.

  18. Stochastic thermodynamics for delayed Langevin systems.

    PubMed

    Jiang, Huijun; Xiao, Tiejun; Hou, Zhonghuai

    2011-06-01

    We discuss stochastic thermodynamics (ST) for delayed Langevin systems in this paper. By using the general principles of ST, the first-law-like energy balance and trajectory-dependent entropy s(t) can be well defined in a way that is similar to that in a system without delay. Because the presence of time delay brings an additional entropy flux into the system, the conventional second law (Δs(tot))≥0 no longer holds true, where Δs(tot) denotes the total entropy change along a stochastic path and (·) stands for the average over the path ensemble. With the help of a Fokker-Planck description, we introduce a delay-averaged trajectory-dependent dissipation functional η[χ(t)] which involves the work done by a delay-averaged force F(x,t) along the path χ(t) and equals the medium entropy change Δs(m)[x(t)] in the absence of delay. We show that the total dissipation functional R=Δs+η, where Δs denotes the system entropy change along a path, obeys (R)≥0, which could be viewed as the second law in the delayed system. In addition, the integral fluctuation theorem (e(-R))=1 also holds true. We apply these concepts to a linear Langevin system with time delay and periodic external force. Numerical results demonstrate that the total entropy change (Δs(tot)) could indeed be negative when the delay feedback is positive. By using an inversing-mapping approach, we are able to obtain the delay-averaged force F(x,t) from the stationary distribution and then calculate the functional R as well as its distribution. The second law (R)≥0 and the fluctuation theorem are successfully validated.

  19. Time Series, Stochastic Processes and Completeness of Quantum Theory

    NASA Astrophysics Data System (ADS)

    Kupczynski, Marian

    2011-03-01

    Most of physical experiments are usually described as repeated measurements of some random variables. Experimental data registered by on-line computers form time series of outcomes. The frequencies of different outcomes are compared with the probabilities provided by the algorithms of quantum theory (QT). In spite of statistical predictions of QT a claim was made that it provided the most complete description of the data and of the underlying physical phenomena. This claim could be easily rejected if some fine structures, averaged out in the standard descriptive statistical analysis, were found in time series of experimental data. To search for these structures one has to use more subtle statistical tools which were developed to study time series produced by various stochastic processes. In this talk we review some of these tools. As an example we show how the standard descriptive statistical analysis of the data is unable to reveal a fine structure in a simulated sample of AR (2) stochastic process. We emphasize once again that the violation of Bell inequalities gives no information on the completeness or the non locality of QT. The appropriate way to test the completeness of quantum theory is to search for fine structures in time series of the experimental data by means of the purity tests or by studying the autocorrelation and partial autocorrelation functions.

  20. On connections between stochastic differential inclusions and set-valued stochastic differential equations driven by semimartingales

    NASA Astrophysics Data System (ADS)

    Michta, Mariusz

    2017-02-01

    In the paper we study properties of solutions to stochastic differential inclusions and set-valued stochastic differential equations with respect to semimartingale integrators. We present new connections between their solutions. In particular, we show that attainable sets of solutions to stochastic inclusions are subsets of values of multivalued solutions of certain set-valued stochastic equations. We also show that every solution to stochastic inclusion is a continuous selection of a multivalued solution of an associated set-valued stochastic equation. The results obtained in the paper generalize results dealing with this topic known both in deterministic and stochastic cases.

  1. Variational principles for stochastic soliton dynamics

    PubMed Central

    Holm, Darryl D.; Tyranowski, Tomasz M.

    2016-01-01

    We develop a variational method of deriving stochastic partial differential equations whose solutions follow the flow of a stochastic vector field. As an example in one spatial dimension, we numerically simulate singular solutions (peakons) of the stochastically perturbed Camassa–Holm (CH) equation derived using this method. These numerical simulations show that peakon soliton solutions of the stochastically perturbed CH equation persist and provide an interesting laboratory for investigating the sensitivity and accuracy of adding stochasticity to finite dimensional solutions of stochastic partial differential equations. In particular, some choices of stochastic perturbations of the peakon dynamics by Wiener noise (canonical Hamiltonian stochastic deformations, CH-SD) allow peakons to interpenetrate and exchange order on the real line in overtaking collisions, although this behaviour does not occur for other choices of stochastic perturbations which preserve the Euler–Poincaré structure of the CH equation (parametric stochastic deformations, P-SD), and it also does not occur for peakon solutions of the unperturbed deterministic CH equation. The discussion raises issues about the science of stochastic deformations of finite-dimensional approximations of evolutionary partial differential equation and the sensitivity of the resulting solutions to the choices made in stochastic modelling. PMID:27118922

  2. Variational principles for stochastic soliton dynamics.

    PubMed

    Holm, Darryl D; Tyranowski, Tomasz M

    2016-03-01

    We develop a variational method of deriving stochastic partial differential equations whose solutions follow the flow of a stochastic vector field. As an example in one spatial dimension, we numerically simulate singular solutions (peakons) of the stochastically perturbed Camassa-Holm (CH) equation derived using this method. These numerical simulations show that peakon soliton solutions of the stochastically perturbed CH equation persist and provide an interesting laboratory for investigating the sensitivity and accuracy of adding stochasticity to finite dimensional solutions of stochastic partial differential equations. In particular, some choices of stochastic perturbations of the peakon dynamics by Wiener noise (canonical Hamiltonian stochastic deformations, CH-SD) allow peakons to interpenetrate and exchange order on the real line in overtaking collisions, although this behaviour does not occur for other choices of stochastic perturbations which preserve the Euler-Poincaré structure of the CH equation (parametric stochastic deformations, P-SD), and it also does not occur for peakon solutions of the unperturbed deterministic CH equation. The discussion raises issues about the science of stochastic deformations of finite-dimensional approximations of evolutionary partial differential equation and the sensitivity of the resulting solutions to the choices made in stochastic modelling.

  3. Multiscale Hy3S: Hybrid stochastic simulation for supercomputers

    PubMed Central

    Salis, Howard; Sotiropoulos, Vassilios; Kaznessis, Yiannis N

    2006-01-01

    Background Stochastic simulation has become a useful tool to both study natural biological systems and design new synthetic ones. By capturing the intrinsic molecular fluctuations of "small" systems, these simulations produce a more accurate picture of single cell dynamics, including interesting phenomena missed by deterministic methods, such as noise-induced oscillations and transitions between stable states. However, the computational cost of the original stochastic simulation algorithm can be high, motivating the use of hybrid stochastic methods. Hybrid stochastic methods partition the system into multiple subsets and describe each subset as a different representation, such as a jump Markov, Poisson, continuous Markov, or deterministic process. By applying valid approximations and self-consistently merging disparate descriptions, a method can be considerably faster, while retaining accuracy. In this paper, we describe Hy3S, a collection of multiscale simulation programs. Results Building on our previous work on developing novel hybrid stochastic algorithms, we have created the Hy3S software package to enable scientists and engineers to both study and design extremely large well-mixed biological systems with many thousands of reactions and chemical species. We have added adaptive stochastic numerical integrators to permit the robust simulation of dynamically stiff biological systems. In addition, Hy3S has many useful features, including embarrassingly parallelized simulations with MPI; special discrete events, such as transcriptional and translation elongation and cell division; mid-simulation perturbations in both the number of molecules of species and reaction kinetic parameters; combinatorial variation of both initial conditions and kinetic parameters to enable sensitivity analysis; use of NetCDF optimized binary format to quickly read and write large datasets; and a simple graphical user interface, written in Matlab, to help users create biological systems

  4. Stochastically forced zonal flows

    NASA Astrophysics Data System (ADS)

    Srinivasan, Kaushik

    an approximate equation for the vorticity correlation function that is then solved perturbatively. The Reynolds stress of the pertubative solution can then be expressed as a function of the mean-flow and its y-derivatives. In particular, it is shown that as long as the forcing breaks mirror-symmetry, the Reynolds stress has a wave-like term, as a result of which the mean-flow is governed by a dispersive wave equation. In a separate study, Reynolds stress induced by an anisotropically forced unbounded Couette flow with uniform shear gamma, on a beta-plane, is calculated in conjunction with the eddy diffusivity of a co-evolving passive tracer. The flow is damped by linear drag on a time scale mu--1. The stochastic forcing is controlled by a parameter alpha, that characterizes whether eddies are elongated along the zonal direction (alpha < 0), the meridional direction (alpha > 0) or are isotropic (alpha = 0). The Reynolds stress varies linearly with alpha and non-linearly and non-monotonically with gamma; but the Reynolds stress is independent of beta. For positive values of alpha, the Reynolds stress displays an "anti-frictional" effect (energy is transferred from the eddies to the mean flow) and a frictional effect for negative values of alpha. With gamma = beta =0, the meridional tracer eddy diffusivity is v'2/(2mu), where v' is the meridional eddy velocity. In general, beta and gamma suppress the diffusivity below v'2/(2mu).

  5. Universality in stochastic exponential growth.

    PubMed

    Iyer-Biswas, Srividya; Crooks, Gavin E; Scherer, Norbert F; Dinner, Aaron R

    2014-07-11

    Recent imaging data for single bacterial cells reveal that their mean sizes grow exponentially in time and that their size distributions collapse to a single curve when rescaled by their means. An analogous result holds for the division-time distributions. A model is needed to delineate the minimal requirements for these scaling behaviors. We formulate a microscopic theory of stochastic exponential growth as a Master Equation that accounts for these observations, in contrast to existing quantitative models of stochastic exponential growth (e.g., the Black-Scholes equation or geometric Brownian motion). Our model, the stochastic Hinshelwood cycle (SHC), is an autocatalytic reaction cycle in which each molecular species catalyzes the production of the next. By finding exact analytical solutions to the SHC and the corresponding first passage time problem, we uncover universal signatures of fluctuations in exponential growth and division. The model makes minimal assumptions, and we describe how more complex reaction networks can reduce to such a cycle. We thus expect similar scalings to be discovered in stochastic processes resulting in exponential growth that appear in diverse contexts such as cosmology, finance, technology, and population growth.

  6. Stochastic cooling: recent theoretical directions

    SciTech Connect

    Bisognano, J.

    1983-03-01

    A kinetic-equation derivation of the stochastic-cooling Fokker-Planck equation of correlation is introduced to describe both the Schottky spectrum and signal suppression. Generalizations to nonlinear gain and coupling between degrees of freedom are presented. Analysis of bunch beam cooling is included.

  7. Stochastic-field cavitation model

    SciTech Connect

    Dumond, J.; Magagnato, F.; Class, A.

    2013-07-15

    Nonlinear phenomena can often be well described using probability density functions (pdf) and pdf transport models. Traditionally, the simulation of pdf transport requires Monte-Carlo codes based on Lagrangian “particles” or prescribed pdf assumptions including binning techniques. Recently, in the field of combustion, a novel formulation called the stochastic-field method solving pdf transport based on Eulerian fields has been proposed which eliminates the necessity to mix Eulerian and Lagrangian techniques or prescribed pdf assumptions. In the present work, for the first time the stochastic-field method is applied to multi-phase flow and, in particular, to cavitating flow. To validate the proposed stochastic-field cavitation model, two applications are considered. First, sheet cavitation is simulated in a Venturi-type nozzle. The second application is an innovative fluidic diode which exhibits coolant flashing. Agreement with experimental results is obtained for both applications with a fixed set of model constants. The stochastic-field cavitation model captures the wide range of pdf shapes present at different locations.

  8. Universality in Stochastic Exponential Growth

    NASA Astrophysics Data System (ADS)

    Iyer-Biswas, Srividya; Crooks, Gavin E.; Scherer, Norbert F.; Dinner, Aaron R.

    2014-07-01

    Recent imaging data for single bacterial cells reveal that their mean sizes grow exponentially in time and that their size distributions collapse to a single curve when rescaled by their means. An analogous result holds for the division-time distributions. A model is needed to delineate the minimal requirements for these scaling behaviors. We formulate a microscopic theory of stochastic exponential growth as a Master Equation that accounts for these observations, in contrast to existing quantitative models of stochastic exponential growth (e.g., the Black-Scholes equation or geometric Brownian motion). Our model, the stochastic Hinshelwood cycle (SHC), is an autocatalytic reaction cycle in which each molecular species catalyzes the production of the next. By finding exact analytical solutions to the SHC and the corresponding first passage time problem, we uncover universal signatures of fluctuations in exponential growth and division. The model makes minimal assumptions, and we describe how more complex reaction networks can reduce to such a cycle. We thus expect similar scalings to be discovered in stochastic processes resulting in exponential growth that appear in diverse contexts such as cosmology, finance, technology, and population growth.

  9. Brownian motors and stochastic resonance.

    PubMed

    Mateos, José L; Alatriste, Fernando R

    2011-12-01

    We study the transport properties for a walker on a ratchet potential. The walker consists of two particles coupled by a bistable potential that allow the interchange of the order of the particles while moving through a one-dimensional asymmetric periodic ratchet potential. We consider the stochastic dynamics of the walker on a ratchet with an external periodic forcing, in the overdamped case. The coupling of the two particles corresponds to a single effective particle, describing the internal degree of freedom, in a bistable potential. This double-well potential is subjected to both a periodic forcing and noise and therefore is able to provide a realization of the phenomenon of stochastic resonance. The main result is that there is an optimal amount of noise where the amplitude of the periodic response of the system is maximum, a signal of stochastic resonance, and that precisely for this optimal noise, the average velocity of the walker is maximal, implying a strong link between stochastic resonance and the ratchet effect.

  10. Stochastic resonance on a circle

    SciTech Connect

    Wiesenfeld, K. ); Pierson, D.; Pantazelou, E.; Dames, C.; Moss, F. )

    1994-04-04

    We describe a new realization of stochastic resonance, applicable to a broad class of systems, based on an underlying excitable dynamics with deterministic reinjection. A simple but general theory of such single-trigger'' systems is compared with analog simulations of the Fitzhugh-Nagumo model, as well as experimental data obtained from stimulated sensory neurons in the crayfish.

  11. Nonlinear Waves on Stochastic Support: Calcium Waves in Astrocyte Syncytia

    NASA Astrophysics Data System (ADS)

    Jung, P.; Cornell-Bell, A. H.

    Astrocyte-signaling has been observed in cell cultures and brain slices in the form of Calcium waves. Their functional relevance for neuronal communication, brain functions and diseases is, however, not understood. In this paper, the propagation of intercellular calcium waves is modeled in terms of waves in excitable media on a stochastic support. We utilize a novel method to decompose the spatiotemporal patterns into space-time clusters (wave fragments). Based on this cluster decomposition, a statistical description of wave patterns is developed.

  12. Algorithmic advances in stochastic programming

    SciTech Connect

    Morton, D.P.

    1993-07-01

    Practical planning problems with deterministic forecasts of inherently uncertain parameters often yield unsatisfactory solutions. Stochastic programming formulations allow uncertain parameters to be modeled as random variables with known distributions, but the size of the resulting mathematical programs can be formidable. Decomposition-based algorithms take advantage of special structure and provide an attractive approach to such problems. We consider two classes of decomposition-based stochastic programming algorithms. The first type of algorithm addresses problems with a ``manageable`` number of scenarios. The second class incorporates Monte Carlo sampling within a decomposition algorithm. We develop and empirically study an enhanced Benders decomposition algorithm for solving multistage stochastic linear programs within a prespecified tolerance. The enhancements include warm start basis selection, preliminary cut generation, the multicut procedure, and decision tree traversing strategies. Computational results are presented for a collection of ``real-world`` multistage stochastic hydroelectric scheduling problems. Recently, there has been an increased focus on decomposition-based algorithms that use sampling within the optimization framework. These approaches hold much promise for solving stochastic programs with many scenarios. A critical component of such algorithms is a stopping criterion to ensure the quality of the solution. With this as motivation, we develop a stopping rule theory for algorithms in which bounds on the optimal objective function value are estimated by sampling. Rules are provided for selecting sample sizes and terminating the algorithm under which asymptotic validity of confidence interval statements for the quality of the proposed solution can be verified. Issues associated with the application of this theory to two sampling-based algorithms are considered, and preliminary empirical coverage results are presented.

  13. A comparison of two- and three-dimensional stochastic models of regional solute movement

    USGS Publications Warehouse

    Shapiro, A.M.; Cvetkovic, V.D.

    1990-01-01

    Recent models of solute movement in porous media that are based on a stochastic description of the porous medium properties have been dedicated primarily to a three-dimensional interpretation of solute movement. In many practical problems, however, it is more convenient and consistent with measuring techniques to consider flow and solute transport as an areal, two-dimensional phenomenon. The physics of solute movement, however, is dependent on the three-dimensional heterogeneity in the formation. A comparison of two- and three-dimensional stochastic interpretations of solute movement in a porous medium having a statistically isotropic hydraulic conductivity field is investigated. To provide an equitable comparison between the two- and three-dimensional analyses, the stochastic properties of the transmissivity are defined in terms of the stochastic properties of the hydraulic conductivity. The variance of the transmissivity is shown to be significantly reduced in comparison to that of the hydraulic conductivity, and the transmissivity is spatially correlated over larger distances. These factors influence the two-dimensional interpretations of solute movement by underestimating the longitudinal and transverse growth of the solute plume in comparison to its description as a three-dimensional phenomenon. Although this analysis is based on small perturbation approximations and the special case of a statistically isotropic hydraulic conductivity field, it casts doubt on the use of a stochastic interpretation of the transmissivity in describing regional scale movement. However, by assuming the transmissivity to be the vertical integration of the hydraulic conductivity field at a given position, the stochastic properties of the hydraulic conductivity can be estimated from the stochastic properties of the transmissivity and applied to obtain a more accurate interpretation of solute movement. ?? 1990 Kluwer Academic Publishers.

  14. A stochastic aerodynamic model for stationary blades in unsteady 3D wind fields

    NASA Astrophysics Data System (ADS)

    Fluck, Manuel; Crawford, Curran

    2016-09-01

    Dynamic loads play an important roll in the design of wind turbines, but establishing the life-time aerodynamic loads (e.g. extreme and fatigue loads) is a computationally expensive task. Conventional (deterministic) methods to analyze long term loads, which rely on the repeated analysis of multiple different wind samples, are usually too expensive to be included in optimization routines. We present a new stochastic approach, which solves the aerodynamic system equations (Lagrangian vortex model) in the stochastic space, and thus arrive directly at a stochastic description of the coupled loads along a turbine blade. This new approach removes the requirement of analyzing multiple different realizations. Instead, long term loads can be extracted from a single stochastic solution, a procedure that is obviously significantly faster. Despite the reduced analysis time, results obtained from the stochastic approach match deterministic result well for a simple test-case (a stationary blade). In future work, the stochastic method will be extended to rotating blades, thus opening up new avenues to include long term loads into turbine optimization.

  15. On the dynamical-stochastic dualism of rainfall intermittency

    NASA Astrophysics Data System (ADS)

    Molini, Annalisa

    2013-04-01

    Intermittency and its non-universal signature in rainfall scaling functions still impose limitations on the modeling of precipitation across different temporal and spatial scales. Whether rainfall intermittency can be considered (and modeled) as a dynamical phenomenon connected with the precipitation generation mechanism or a predominantly stochastic process remains in fact an open question. Fat-tail probability distributions and red-noise spectra were found characterizing the rainfall process over a wide range of scales and climatic regimes - in analogy with some classical non-linear systems displaying "dynamical" intermittency. However, stochastic processes with infinite degrees of freedom can likewise generate signals with alternating persistent laminar periods and highly bursting phases. This talk explores the dynamical-stochastic dichotomy of precipitation, by presenting some recent advancement in the description of temporal rainfall intermittency. We focus on the connection between intermittency and the rainfall generation process, as well as the dependence of intermittency statistics on different climatic regimes, with particular emphasis on arid and semi-arid climates, where intermittency and convection are the main hallmark of the rainfall regime.

  16. Stochastic resonance in nanomechanical systems

    NASA Astrophysics Data System (ADS)

    Badzey, Robert L.

    The phenomenon of stochastic resonance is a counter-intuitive one: adding noise to a noisy nonlinear system under the influence of a modulation results in coherent behavior. The signature of the effect is a resonance in the signal-to-noise ratio of the response over a certain range of noise power; this behavior is absent if either the modulation or the noise are absent. Stochastic resonance has attracted considerable interest over the past several decades, having been seen in a great number of physical and biological systems. Here, observation of stochastic resonance is reported for nanomechanical systems consisting of a doubly-clamped beam resonators fabricated from single-crystal silicon. Such oscillators have been found to display nonlinear and bistable behavior under the influence of large driving forces. This bistability is exploited to produce a controllable nanomechanical switch, a device that may be used as the basis for a new generation of computational memory elements. These oscillators possess large intrinsic resonance frequencies (MHz range or higher) due to their small size and relatively high stiffness; thus they have the potential to rival the current state-of-the-art of electronic and magnetic storage technologies. This small size also allows them to be packed in densities which meet or exceed the superparamagnetic limit for magnetic storage media of 100 GB/in2. Two different doubly-clamped beams were cooled to low temperatures (300 mK--4 K), and excited with a magnetomotive technique. They were driven into the nonlinear response regime, and then modulated to induce switching between their bistable states. When the modulation was reduced, the switching died out. Application of noise, either with an external broadband source or via an increase in temperature, resulted in a distinct resonance in the signal-to-noise ratio. Aside from establishing the phenomenon of stochastic resonance in yet another physical system, the observation of this effect has

  17. An introduction to stochastic control theory, path integrals and reinforcement learning

    NASA Astrophysics Data System (ADS)

    Kappen, Hilbert J.

    2007-02-01

    Control theory is a mathematical description of how to act optimally to gain future rewards. In this paper I give an introduction to deterministic and stochastic control theory and I give an overview of the possible application of control theory to the modeling of animal behavior and learning. I discuss a class of non-linear stochastic control problems that can be efficiently solved using a path integral or by MC sampling. In this control formalism the central concept of cost-to-go becomes a free energy and methods and concepts from statistical physics can be readily applied.

  18. Fractional Brownian Motion with Stochastic Variance:. Modeling Absolute Returns in STOCK Markets

    NASA Astrophysics Data System (ADS)

    Roman, H. E.; Porto, M.

    We discuss a model for simulating a long-time memory in time series characterized in addition by a stochastic variance. The model is based on a combination of fractional Brownian motion (FBM) concepts, for dealing with the long-time memory, with an autoregressive scheme with conditional heteroskedasticity (ARCH), responsible for the stochastic variance of the series, and is denoted as FBMARCH. Unlike well-known fractionally integrated autoregressive models, FBMARCH admits finite second moments. The resulting probability distribution functions have power-law tails with exponents similar to ARCH models. This idea is applied to the description of long-time autocorrelations of absolute returns ubiquitously observed in stock markets.

  19. Mean-field vs. Stochastic Models for Transcriptional Regulation

    NASA Astrophysics Data System (ADS)

    Blossey, Ralf; Giuraniuc, Claudiu

    2009-03-01

    We introduce a minimal model description for the dynamics of transcriptional regulatory networks. It is studied within a mean-field approximation, i.e., by deterministic ode's representing the reaction kinetics, and by stochastic simulations employing the Gillespie algorithm. We elucidate the different results both approaches can deliver, depending on the network under study, and in particular depending on the level of detail retained in the respective description. Two examples are addressed in detail: the repressilator, a transcriptional clock based on a three-gene network realized experimentally in E. coli, and a bistable two-gene circuit under external driving, a transcriptional network motif recently proposed to play a role in cellular development.

  20. Mean-field versus stochastic models for transcriptional regulation

    NASA Astrophysics Data System (ADS)

    Blossey, R.; Giuraniuc, C. V.

    2008-09-01

    We introduce a minimal model description for the dynamics of transcriptional regulatory networks. It is studied within a mean-field approximation, i.e., by deterministic ODE’s representing the reaction kinetics, and by stochastic simulations employing the Gillespie algorithm. We elucidate the different results that both approaches can deliver, depending on the network under study, and in particular depending on the level of detail retained in the respective description. Two examples are addressed in detail: The repressilator, a transcriptional clock based on a three-gene network realized experimentally in E. coli, and a bistable two-gene circuit under external driving, a transcriptional network motif recently proposed to play a role in cellular development.

  1. Stochastic oscillatory dynamics of generalized repressilators

    NASA Astrophysics Data System (ADS)

    Strelkowa, Natalja; Barahona, Mauricio

    2012-09-01

    We explore the impact of low copy number noise on the onset and quality of oscillations in the generalized repressilator model with odd-number of elements. In our previous work [Strelkowa & Barahona, 2011] we applied deterministic complexity analysis and provided analytical conditions for the emergence of stable limit cycles via Hopf Bifurcations in odd-numbered rings. Here, we extend this analysis to the stochastic description of the model and study the influence of a biochemical design 'knob' - the gene copy number - on the onset and quality of the oscillations. The gene copy number simultaneously affects two parameters that are usually considered independently in mathematical analyses of this model: namely, the system size Ω and the deterministic bifurcation parameter c1. Here we study the dynamic properties on the (Ω,c1)-plane and characterize how the oscillation characteristics depend on both parameters. The (Ω,c1)-plane can thus provide a useful perspective for the design and control of engineered synthetic oscillators with respect to biologically meaningful design parameters.

  2. Stochastic Terminal Dynamics in Epithelial Cell Intercalation

    NASA Astrophysics Data System (ADS)

    Eule, Stephan; Metzger, Jakob; Reichl, Lars; Kong, Deqing; Zhang, Yujun; Grosshans, Joerg; Wolf, Fred

    2015-03-01

    We found that the constriction of epithelial cell contacts during intercalation in germ band extension in Drosophila embryos follows intriguingly simple quantitative laws. The mean contact length < L > follows < L > (t) ~(T - t) α , where T is the finite collapse time; the time dependent variance of contact length is proportional to the square of the mean; finally the time dependent probability density of the contact lengths remains close to Gaussian during the entire process. These observations suggest that the dynamics of contact collapse can be captured by a stochastic differential equation analytically tractable in small noise approximation. Here, we present such a model, providing an effective description of the non-equilibrium statistical mechanics of contact collapse. All model parameters are fixed by measurements of time dependent mean and variance of contact lengths. The model predicts the contact length covariance function that we obtain in closed form. The contact length covariance function closely matches experimental observations suggesting that the model well captures the dynamics of contact collapse.

  3. Fluid Physics Under a Stochastic Acceleration Field

    NASA Technical Reports Server (NTRS)

    Vinals, Jorge

    2001-01-01

    The research summarized in this report has involved a combined theoretical and computational study of fluid flow that results from the random acceleration environment present onboard space orbiters, also known as g-jitter. We have focused on a statistical description of the observed g-jitter, on the flows that such an acceleration field can induce in a number of experimental configurations of interest, and on extending previously developed methodology to boundary layer flows. Narrow band noise has been shown to describe many of the features of acceleration data collected during space missions. The scale of baroclinically induced flows when the driving acceleration is random is not given by the Rayleigh number. Spatially uniform g-jitter induces additional hydrodynamic forces among suspended particles in incompressible fluids. Stochastic modulation of the control parameter shifts the location of the onset of an oscillatory instability. Random vibration of solid boundaries leads to separation of boundary layers. Steady streaming ahead of a modulated solid-melt interface enhances solute transport, and modifies the stability boundaries of a planar front.

  4. Wavelet entropy of stochastic processes

    NASA Astrophysics Data System (ADS)

    Zunino, L.; Pérez, D. G.; Garavaglia, M.; Rosso, O. A.

    2007-06-01

    We compare two different definitions for the wavelet entropy associated to stochastic processes. The first one, the normalized total wavelet entropy (NTWS) family [S. Blanco, A. Figliola, R.Q. Quiroga, O.A. Rosso, E. Serrano, Time-frequency analysis of electroencephalogram series, III. Wavelet packets and information cost function, Phys. Rev. E 57 (1998) 932-940; O.A. Rosso, S. Blanco, J. Yordanova, V. Kolev, A. Figliola, M. Schürmann, E. Başar, Wavelet entropy: a new tool for analysis of short duration brain electrical signals, J. Neurosci. Method 105 (2001) 65-75] and a second introduced by Tavares and Lucena [Physica A 357(1) (2005) 71-78]. In order to understand their advantages and disadvantages, exact results obtained for fractional Gaussian noise ( -1<α< 1) and fractional Brownian motion ( 1<α< 3) are assessed. We find out that the NTWS family performs better as a characterization method for these stochastic processes.

  5. Stochastic thermodynamics with information reservoirs

    NASA Astrophysics Data System (ADS)

    Barato, Andre C.; Seifert, Udo

    2014-10-01

    We generalize stochastic thermodynamics to include information reservoirs. Such information reservoirs, which can be modeled as a sequence of bits, modify the second law. For example, work extraction from a system in contact with a single heat bath becomes possible if the system also interacts with an information reservoir. We obtain an inequality, and the corresponding fluctuation theorem, generalizing the standard entropy production of stochastic thermodynamics. From this inequality we can derive an information processing entropy production, which gives the second law in the presence of information reservoirs. We also develop a systematic linear response theory for information processing machines. For a unicyclic machine powered by an information reservoir, the efficiency at maximum power can deviate from the standard value of 1 /2 . For the case where energy is consumed to erase the tape, the efficiency at maximum erasure rate is found to be 1 /2 .

  6. Stochastic background of atmospheric cascades

    SciTech Connect

    Wilk, G. ); Wlodarczyk, Z. )

    1993-06-15

    Fluctuations in the atmospheric cascades developing during the propagation of very high energy cosmic rays through the atmosphere are investigated using stochastic branching model of pure birth process with immigration. In particular, we show that the multiplicity distributions of secondaries emerging from gamma families are much narrower than those resulting from hadronic families. We argue that the strong intermittent like behaviour found recently in atmospheric families results from the fluctuations in the cascades themselves and are insensitive to the details of elementary interactions.

  7. Stochastic Fluctuations in Gene Regulation

    DTIC Science & Technology

    2005-04-01

    AFRL-IF- RS -TR-2005-126 Final Technical Report April 2005 STOCHASTIC FLUCTUATIONS IN GENE REGULATION Boston University...be releasable to the general public, including foreign nations. AFRL-IF- RS -TR-2005-126 has been reviewed and is approved for publication...AGENCY REPORT NUMBER AFRL-IF- RS -TR-2005-126 11. SUPPLEMENTARY NOTES AFRL Project Engineer: Peter J. Costianes/IFED/(315) 330-4030

  8. Stochastic resonance across bifurcation cascades

    NASA Astrophysics Data System (ADS)

    Nicolis, C.; Nicolis, G.

    2017-03-01

    The classical setting of stochastic resonance is extended to account for parameter variations leading to transitions between a unique stable state, bistability, and multistability regimes, across singularities of various kinds. Analytic expressions for the amplitude and the phase of the response in terms of key parameters are obtained. The conditions for optimal responses are derived in terms of the bifurcation parameter, the driving frequency, and the noise strength.

  9. Optimality Functions in Stochastic Programming

    DTIC Science & Technology

    2009-12-02

    nonconvex. Non - convex stochastic optimization problems arise in such diverse applications as estimation of mixed logit models [2], engineering design...first- order necessary optimality conditions ; see for example Propositions 3.3.1 and 3.3.5 in [7] or Theorem 2.2.4 in [25]. If the evaluation of f j...procedures for validation analysis of a candidate point x ∈ IRn. Since P may be nonconvex, we focus on first-order necessary optimality conditions as

  10. Stochastic cooling technology at Fermilab

    NASA Astrophysics Data System (ADS)

    Pasquinelli, Ralph J.

    2004-10-01

    The first antiproton cooling systems were installed and commissioned at Fermilab in 1984-1985. In the interim period, there have been several major upgrades, system improvements, and complete reincarnation of cooling systems. This paper will present some of the technology that was pioneered at Fermilab to implement stochastic cooling systems in both the Antiproton Source and Recycler accelerators. Current performance data will also be presented.

  11. Stochastic Modeling Of Biochemical Reactions

    DTIC Science & Technology

    2006-11-01

    chemical reactions. Often for these reactions, the dynamics of the first M-order statistical moments of the species populations do not form a closed...results a stochastic model for gene expression is investigated. We show that in gene expression mechanisms , in which a protein inhibits its own...chemical reactions [7, 8, 4, 9, 10]. Since one is often interested in only the first and second order statistical moments for the number of molecules of

  12. Modeling Bacterial Population Growth from Stochastic Single-Cell Dynamics

    PubMed Central

    Molina, Ignacio; Theodoropoulos, Constantinos

    2014-01-01

    A few bacterial cells may be sufficient to produce a food-borne illness outbreak, provided that they are capable of adapting and proliferating on a food matrix. This is why any quantitative health risk assessment policy must incorporate methods to accurately predict the growth of bacterial populations from a small number of pathogens. In this aim, mathematical models have become a powerful tool. Unfortunately, at low cell concentrations, standard deterministic models fail to predict the fate of the population, essentially because the heterogeneity between individuals becomes relevant. In this work, a stochastic differential equation (SDE) model is proposed to describe variability within single-cell growth and division and to simulate population growth from a given initial number of individuals. We provide evidence of the model ability to explain the observed distributions of times to division, including the lag time produced by the adaptation to the environment, by comparing model predictions with experiments from the literature for Escherichia coli, Listeria innocua, and Salmonella enterica. The model is shown to accurately predict experimental growth population dynamics for both small and large microbial populations. The use of stochastic models for the estimation of parameters to successfully fit experimental data is a particularly challenging problem. For instance, if Monte Carlo methods are employed to model the required distributions of times to division, the parameter estimation problem can become numerically intractable. We overcame this limitation by converting the stochastic description to a partial differential equation (backward Kolmogorov) instead, which relates to the distribution of division times. Contrary to previous stochastic formulations based on random parameters, the present model is capable of explaining the variability observed in populations that result from the growth of a small number of initial cells as well as the lack of it compared to

  13. Modeling bacterial population growth from stochastic single-cell dynamics.

    PubMed

    Alonso, Antonio A; Molina, Ignacio; Theodoropoulos, Constantinos

    2014-09-01

    A few bacterial cells may be sufficient to produce a food-borne illness outbreak, provided that they are capable of adapting and proliferating on a food matrix. This is why any quantitative health risk assessment policy must incorporate methods to accurately predict the growth of bacterial populations from a small number of pathogens. In this aim, mathematical models have become a powerful tool. Unfortunately, at low cell concentrations, standard deterministic models fail to predict the fate of the population, essentially because the heterogeneity between individuals becomes relevant. In this work, a stochastic differential equation (SDE) model is proposed to describe variability within single-cell growth and division and to simulate population growth from a given initial number of individuals. We provide evidence of the model ability to explain the observed distributions of times to division, including the lag time produced by the adaptation to the environment, by comparing model predictions with experiments from the literature for Escherichia coli, Listeria innocua, and Salmonella enterica. The model is shown to accurately predict experimental growth population dynamics for both small and large microbial populations. The use of stochastic models for the estimation of parameters to successfully fit experimental data is a particularly challenging problem. For instance, if Monte Carlo methods are employed to model the required distributions of times to division, the parameter estimation problem can become numerically intractable. We overcame this limitation by converting the stochastic description to a partial differential equation (backward Kolmogorov) instead, which relates to the distribution of division times. Contrary to previous stochastic formulations based on random parameters, the present model is capable of explaining the variability observed in populations that result from the growth of a small number of initial cells as well as the lack of it compared to

  14. Implications of a stochastic approach to air-quality regulations

    SciTech Connect

    Witten, A.J.; Kornegay, F.C.; Hunsaker, D.B. Jr.; Long, E.C. Jr.; Sharp, R.D.; Walsh, P.J.; Zeighami, E.A.; Gordon, J.S.; Lin, W.L.

    1982-09-01

    This study explores the viability of a stochastic approach to air quality regulations. The stochastic approach considered here is one which incorporates the variability which exists in sulfur dioxide (SO/sub 2/) emissions from coal-fired power plants. Emission variability arises from a combination of many factors including variability in the composition of as-received coal such as sulfur content, moisture content, ash content, and heating value, as well as variability which is introduced in power plant operations. The stochastic approach as conceived in this study addresses variability by taking the SO/sub 2/ emission rate to be a random variable with specified statistics. Given the statistical description of the emission rate and known meteorological conditions, it is possible to predict the probability of a facility exceeding a specified emission limit or violating an established air quality standard. This study also investigates the implications of accounting for emissions variability by allowing compliance to be interpreted as an allowable probability of occurrence of given events. For example, compliance with an emission limit could be defined as the probability of exceeding a specified emission value, such as 1.2 lbs SO/sub 2//MMBtu, being less than 1%. In contrast, compliance is currently taken to mean that this limit shall never be exceeded, i.e., no exceedance probability is allowed. The focus of this study is on the economic benefits offered to facilities through the greater flexibility of the stochastic approach as compared with possible changes in air quality and health effects which could result.

  15. Stochastic modeling of carbon oxidation

    SciTech Connect

    Chen, W.Y,; Kulkarni, A.; Milum, J.L.; Fan, L.T.

    1999-12-01

    Recent studies of carbon oxidation by scanning tunneling microscopy indicate that measured rates of carbon oxidation can be affected by randomly distributed defects in the carbon structure, which vary in size. Nevertheless, the impact of this observation on the analysis or modeling of the oxidation rate has not been critically assessed. This work focuses on the stochastic analysis of the dynamics of carbon clusters' conversions during the oxidation of a carbon sheet. According to the classic model of Nagle and Strickland-Constable (NSC), two classes of carbon clusters are involved in three types of reactions: gasification of basal-carbon clusters, gasification of edge-carbon clusters, and conversion of the edge-carbon clusters to the basal-carbon clusters due to the thermal annealing. To accommodate the dilution of basal clusters, however, the NSC model is modified for the later stage of oxidation in this work. Master equations governing the numbers of three classes of carbon clusters, basal, edge and gasified, are formulated from stochastic population balance. The stochastic pathways of three different classes of carbon during oxidation, that is, their means and the fluctuations around these means, have been numerically simulated independently by the algorithm derived from the master equations, as well as by an event-driven Monte Carlo algorithm. Both algorithms have given rise to identical results.

  16. Mechanical Autonomous Stochastic Heat Engine.

    PubMed

    Serra-Garcia, Marc; Foehr, André; Molerón, Miguel; Lydon, Joseph; Chong, Christopher; Daraio, Chiara

    2016-07-01

    Stochastic heat engines are devices that generate work from random thermal motion using a small number of highly fluctuating degrees of freedom. Proposals for such devices have existed for more than a century and include the Maxwell demon and the Feynman ratchet. Only recently have they been demonstrated experimentally, using, e.g., thermal cycles implemented in optical traps. However, recent experimental demonstrations of classical stochastic heat engines are nonautonomous, since they require an external control system that prescribes a heating and cooling cycle and consume more energy than they produce. We present a heat engine consisting of three coupled mechanical resonators (two ribbons and a cantilever) subject to a stochastic drive. The engine uses geometric nonlinearities in the resonating ribbons to autonomously convert a random excitation into a low-entropy, nonpassive oscillation of the cantilever. The engine presents the anomalous heat transport property of negative thermal conductivity, consisting in the ability to passively transfer energy from a cold reservoir to a hot reservoir.

  17. Multiple fields in stochastic inflation

    SciTech Connect

    Assadullahi, Hooshyar; Firouzjahi, Hassan; Noorbala, Mahdiyar; Vennin, Vincent; Wands, David

    2016-06-24

    Stochastic effects in multi-field inflationary scenarios are investigated. A hierarchy of diffusion equations is derived, the solutions of which yield moments of the numbers of inflationary e-folds. Solving the resulting partial differential equations in multi-dimensional field space is more challenging than the single-field case. A few tractable examples are discussed, which show that the number of fields is, in general, a critical parameter. When more than two fields are present for instance, the probability to explore arbitrarily large-field regions of the potential, otherwise inaccessible to single-field dynamics, becomes non-zero. In some configurations, this gives rise to an infinite mean number of e-folds, regardless of the initial conditions. Another difference with respect to single-field scenarios is that multi-field stochastic effects can be large even at sub-Planckian energy. This opens interesting new possibilities for probing quantum effects in inflationary dynamics, since the moments of the numbers of e-folds can be used to calculate the distribution of primordial density perturbations in the stochastic-δN formalism.

  18. Mechanical Autonomous Stochastic Heat Engine

    NASA Astrophysics Data System (ADS)

    Serra-Garcia, Marc; Foehr, André; Molerón, Miguel; Lydon, Joseph; Chong, Christopher; Daraio, Chiara

    2016-07-01

    Stochastic heat engines are devices that generate work from random thermal motion using a small number of highly fluctuating degrees of freedom. Proposals for such devices have existed for more than a century and include the Maxwell demon and the Feynman ratchet. Only recently have they been demonstrated experimentally, using, e.g., thermal cycles implemented in optical traps. However, recent experimental demonstrations of classical stochastic heat engines are nonautonomous, since they require an external control system that prescribes a heating and cooling cycle and consume more energy than they produce. We present a heat engine consisting of three coupled mechanical resonators (two ribbons and a cantilever) subject to a stochastic drive. The engine uses geometric nonlinearities in the resonating ribbons to autonomously convert a random excitation into a low-entropy, nonpassive oscillation of the cantilever. The engine presents the anomalous heat transport property of negative thermal conductivity, consisting in the ability to passively transfer energy from a cold reservoir to a hot reservoir.

  19. Network motif identification in stochastic networks

    NASA Astrophysics Data System (ADS)

    Jiang, Rui; Tu, Zhidong; Chen, Ting; Sun, Fengzhu

    2006-06-01

    Network motifs have been identified in a wide range of networks across many scientific disciplines and are suggested to be the basic building blocks of most complex networks. Nonetheless, many networks come with intrinsic and/or experimental uncertainties and should be treated as stochastic networks. The building blocks in these networks thus may also have stochastic properties. In this article, we study stochastic network motifs derived from families of mutually similar but not necessarily identical patterns of interconnections. We establish a finite mixture model for stochastic networks and develop an expectation-maximization algorithm for identifying stochastic network motifs. We apply this approach to the transcriptional regulatory networks of Escherichia coli and Saccharomyces cerevisiae, as well as the protein-protein interaction networks of seven species, and identify several stochastic network motifs that are consistent with current biological knowledge. expectation-maximization algorithm | mixture model | transcriptional regulatory network | protein-protein interaction network

  20. Stochastic Vorticity and Associated Filtering Theory

    SciTech Connect

    Amirdjanova, A.; Kallianpur, G.

    2002-12-19

    The focus of this work is on a two-dimensional stochastic vorticity equation for an incompressible homogeneous viscous fluid. We consider a signed measure-valued stochastic partial differential equation for a vorticity process based on the Skorohod-Ito evolution of a system of N randomly moving point vortices. A nonlinear filtering problem associated with the evolution of the vorticity is considered and a corresponding Fujisaki-Kallianpur-Kunita stochastic differential equation for the optimal filter is derived.

  1. Applications of stochastic optimization, Task 4

    SciTech Connect

    1994-12-01

    This report illustrates the power of the new stochastic optimization and stochastic programming capabilities developed around the ASPEN simulator in solving various types of design and analysis problems for advanced energy systems. A case study is presented for the Lurgi air-blown dry ash gasifier IGCC system. In addition the stochastic optimization capability can also be used for off-line quality control. The methodology is presented in the context of a simple gas turbine combustor flowsheet.

  2. Stochastic Linear Quadratic Optimal Control Problems

    SciTech Connect

    Chen, S.; Yong, J.

    2001-07-01

    This paper is concerned with the stochastic linear quadratic optimal control problem (LQ problem, for short) for which the coefficients are allowed to be random and the cost functional is allowed to have a negative weight on the square of the control variable. Some intrinsic relations among the LQ problem, the stochastic maximum principle, and the (linear) forward-backward stochastic differential equations are established. Some results involving Riccati equation are discussed as well.

  3. Stochastic Blockmodels with Growing Number of Classes

    DTIC Science & Technology

    2011-01-01

    Office P.O. Box 12211 Research Triangle Park, NC 27709-2211 15. SUBJECT TERMS stochastic blockmodel, logit model, network confidence bounds David...simulations verifying the conditions sufficient for our results, and conclude by fitting a logit parameterization of a stochastic blockmodel with...assignment. We provide simulations verifying the conditions sufficient for our results, and conclude by fitting a logit parameterization of a stochastic

  4. Biomolecular Network Simulator: Software for Stochastic Simulations of Biomolecular Reaction Networks on Supercomputers

    NASA Astrophysics Data System (ADS)

    Chushak, Yaroslav; Foy, Brent; Frazier, John

    2008-03-01

    At the functional level, all biological processes in cells can be represented as a series of biochemical reactions that are stochastic in nature. We have developed a software package called Biomolecular Network Simulator (BNS) that uses a stochastic approach to model and simulate complex biomolecular reaction networks. Two simulation algorithms - the exact Gillespie stochastic simulation algorithm and the approximate adaptive tau-leaping algorithm - are implemented for generating Monte Carlo trajectories that describe the evolution of a system of biochemical reactions. The software uses a combination of MATLAB and C-coded functions and is parallelized with the Message Passing Interface (MPI) library to run on multiprocessor architectures. We will present a brief description of the Biomolecular Network Simulator software along with some examples.

  5. Multimedia content description framework

    NASA Technical Reports Server (NTRS)

    Bergman, Lawrence David (Inventor); Kim, Michelle Yoonk Yung (Inventor); Li, Chung-Sheng (Inventor); Mohan, Rakesh (Inventor); Smith, John Richard (Inventor)

    2003-01-01

    A framework is provided for describing multimedia content and a system in which a plurality of multimedia storage devices employing the content description methods of the present invention can interoperate. In accordance with one form of the present invention, the content description framework is a description scheme (DS) for describing streams or aggregations of multimedia objects, which may comprise audio, images, video, text, time series, and various other modalities. This description scheme can accommodate an essentially limitless number of descriptors in terms of features, semantics or metadata, and facilitate content-based search, index, and retrieval, among other capabilities, for both streamed or aggregated multimedia objects.

  6. Continuous Variable Teleportation Within Stochastic Electrodynamics

    NASA Astrophysics Data System (ADS)

    Carmichael, H. J.; Nha, Hyunchul

    2004-12-01

    Stochastic electrodynamics provides a local realistic interpretation of the continuous variable teleportation of coherent light. Time-domain simulations illustrate broadband features of the teleportation process.

  7. Bond-based linear indices of the non-stochastic and stochastic edge-adjacency matrix. 1. Theory and modeling of ChemPhys properties of organic molecules.

    PubMed

    Marrero-Ponce, Yovani; Martínez-Albelo, Eugenio R; Casañola-Martín, Gerardo M; Castillo-Garit, Juan A; Echevería-Díaz, Yunaimy; Zaldivar, Vicente Romero; Tygat, Jan; Borges, José E Rodriguez; García-Domenech, Ramón; Torrens, Francisco; Pérez-Giménez, Facundo

    2010-11-01

    Novel bond-level molecular descriptors are proposed, based on linear maps similar to the ones defined in algebra theory. The kth edge-adjacency matrix (E(k)) denotes the matrix of bond linear indices (non-stochastic) with regard to canonical basis set. The kth stochastic edge-adjacency matrix, ES(k), is here proposed as a new molecular representation easily calculated from E(k). Then, the kth stochastic bond linear indices are calculated using ES(k) as operators of linear transformations. In both cases, the bond-type formalism is developed. The kth non-stochastic and stochastic total linear indices are calculated by adding the kth non-stochastic and stochastic bond linear indices, respectively, of all bonds in molecule. First, the new bond-based molecular descriptors (MDs) are tested for suitability, for the QSPRs, by analyzing regressions of novel indices for selected physicochemical properties of octane isomers (first round). General performance of the new descriptors in this QSPR studies is evaluated with regard to the well-known sets of 2D/3D MDs. From the analysis, we can conclude that the non-stochastic and stochastic bond-based linear indices have an overall good modeling capability proving their usefulness in QSPR studies. Later, the novel bond-level MDs are also used for the description and prediction of the boiling point of 28 alkyl-alcohols (second round), and to the modeling of the specific rate constant (log k), partition coefficient (log P), as well as the antibacterial activity of 34 derivatives of 2-furylethylenes (third round). The comparison with other approaches (edge- and vertices-based connectivity indices, total and local spectral moments, and quantum chemical descriptors as well as E-state/biomolecular encounter parameters) exposes a good behavior of our method in this QSPR studies. Finally, the approach described in this study appears to be a very promising structural invariant, useful not only for QSPR studies but also for similarity

  8. Physics 3204. Course Description.

    ERIC Educational Resources Information Center

    Newfoundland and Labrador Dept. of Education.

    A description of the physics 3204 course in Newfoundland and Labrador is provided. The description includes: (1) statement of purpose, including general objectives of science education; (2) a list of six course objectives; (3) course content for units on sound, light, optical instruments, electrostatics, current electricity, Michael Faraday and…

  9. Descriptive Metadata: Emerging Standards.

    ERIC Educational Resources Information Center

    Ahronheim, Judith R.

    1998-01-01

    Discusses metadata, digital resources, cross-disciplinary activity, and standards. Highlights include Standard Generalized Markup Language (SGML); Extensible Markup Language (XML); Dublin Core; Resource Description Framework (RDF); Text Encoding Initiative (TEI); Encoded Archival Description (EAD); art and cultural-heritage metadata initiatives;…

  10. Stochastic solution to quantum dynamics

    NASA Technical Reports Server (NTRS)

    John, Sarah; Wilson, John W.

    1994-01-01

    The quantum Liouville equation in the Wigner representation is solved numerically by using Monte Carlo methods. For incremental time steps, the propagation is implemented as a classical evolution in phase space modified by a quantum correction. The correction, which is a momentum jump function, is simulated in the quasi-classical approximation via a stochastic process. The technique, which is developed and validated in two- and three- dimensional momentum space, extends an earlier one-dimensional work. Also, by developing a new algorithm, the application to bound state motion in an anharmonic quartic potential shows better agreement with exact solutions in two-dimensional phase space.

  11. Hamilton's principle in stochastic mechanics

    NASA Astrophysics Data System (ADS)

    Pavon, Michele

    1995-12-01

    In this paper we establish three variational principles that provide new foundations for Nelson's stochastic mechanics in the case of nonrelativistic particles without spin. The resulting variational picture is much richer and of a different nature with respect to the one previously considered in the literature. We first develop two stochastic variational principles whose Hamilton-Jacobi-like equations are precisely the two coupled partial differential equations that are obtained from the Schrödinger equation (Madelung equations). The two problems are zero-sum, noncooperative, stochastic differential games that are familiar in the control theory literature. They are solved here by means of a new, absolutely elementary method based on Lagrange functionals. For both games the saddle-point equilibrium solution is given by the Nelson's process and the optimal controls for the two competing players are precisely Nelson's current velocity v and osmotic velocity u, respectively. The first variational principle includes as special cases both the Guerra-Morato variational principle [Phys. Rev. D 27, 1774 (1983)] and Schrödinger original variational derivation of the time-independent equation. It also reduces to the classical least action principle when the intensity of the underlying noise tends to zero. It appears as a saddle-point action principle. In the second variational principle the action is simply the difference between the initial and final configurational entropy. It is therefore a saddle-point entropy production principle. From the variational principles it follows, in particular, that both v(x,t) and u(x,t) are gradients of appropriate principal functions. In the variational principles, the role of the background noise has the intuitive meaning of attempting to contrast the more classical mechanical features of the system by trying to maximize the action in the first principle and by trying to increase the entropy in the second. Combining the two variational

  12. Resolution for Stochastic Boolean Satisfiability

    NASA Astrophysics Data System (ADS)

    Teige, Tino; Fränzle, Martin

    The stochastic Boolean satisfiability (SSAT) problem was introduced by Papadimitriou in 1985 by adding a probabilistic model of uncertainty to propositional satisfiability through randomized quantification. SSAT has many applications, e.g., in probabilistic planning and, more recently by integrating arithmetic, in probabilistic model checking. In this paper, we first present a new result on the computational complexity of SSAT: SSAT remains PSPACE-complete even for its restriction to 2CNF. Second, we propose a sound and complete resolution calculus for SSAT complementing the classical backtracking search algorithms.

  13. Stochastic elimination of cancer cells.

    PubMed Central

    Michor, Franziska; Nowak, Martin A; Frank, Steven A; Iwasa, Yoh

    2003-01-01

    Tissues of multicellular organisms consist of stem cells and differentiated cells. Stem cells divide to produce new stem cells or differentiated cells. Differentiated cells divide to produce new differentiated cells. We show that such a tissue design can reduce the rate of fixation of mutations that increase the net proliferation rate of cells. It has, however, no consequence for the rate of fixation of neutral mutations. We calculate the optimum relative abundance of stem cells that minimizes the rate of generating cancer cells. There is a critical fraction of stem cell divisions that is required for a stochastic elimination ('wash out') of cancer cells. PMID:14561289

  14. Stochastic Models of Human Errors

    NASA Technical Reports Server (NTRS)

    Elshamy, Maged; Elliott, Dawn M. (Technical Monitor)

    2002-01-01

    Humans play an important role in the overall reliability of engineering systems. More often accidents and systems failure are traced to human errors. Therefore, in order to have meaningful system risk analysis, the reliability of the human element must be taken into consideration. Describing the human error process by mathematical models is a key to analyzing contributing factors. Therefore, the objective of this research effort is to establish stochastic models substantiated by sound theoretic foundation to address the occurrence of human errors in the processing of the space shuttle.

  15. Molecular Motors and Stochastic Models

    NASA Astrophysics Data System (ADS)

    Lipowsky, Reinhard

    The behavior of single molecular motors such as kinesin or myosin V, which move on linear filaments, involves a nontrivial coupling between the biochemical motor cycle and the stochastic movement. This coupling can be studied in the framework of nonuniform ratchet models which are characterized by spatially localized transition rates between the different internal states of the motor. These models can be classified according to their functional relationships between the motor velocity and the concentration of the fuel molecules. The simplest such relationship applies to two subclasses of models for dimeric kinesin and agrees with experimental observations on this molecular motor.

  16. Bifurcation and Optimal Stochastic Control.

    DTIC Science & Technology

    1982-03-01

    as soon as luX InW w’(0) n L nis boundeI. To sir.iplity the notations, we denote by u = 1 . Without loss of n generality we may assume that c l...Stochastic Control. F O R M I II I • Il I i ,iii i, DD I JAP7 1473 EDITION OF I NOV S IS OSOLE’TE UNCLASSIFIED SECURITY CLASSIFICATION OF THIS PAGE i(,en bot. EntereJ) DAT FILMEI DIC

  17. Stochastic Gain in Population Dynamics

    NASA Astrophysics Data System (ADS)

    Traulsen, Arne; Röhl, Torsten; Schuster, Heinz Georg

    2004-07-01

    We introduce an extension of the usual replicator dynamics to adaptive learning rates. We show that a population with a dynamic learning rate can gain an increased average payoff in transient phases and can also exploit external noise, leading the system away from the Nash equilibrium, in a resonancelike fashion. The payoff versus noise curve resembles the signal to noise ratio curve in stochastic resonance. Seen in this broad context, we introduce another mechanism that exploits fluctuations in order to improve properties of the system. Such a mechanism could be of particular interest in economic systems.

  18. Dynamically orthogonal field equations for stochastic flows and particle dynamics

    DTIC Science & Technology

    2011-02-01

    where uncertainty ‘lives’ as well as a system of Stochastic Di erential Equations that de nes how the uncertainty evolves in the time varying stochastic ... stochastic dynamical component that are both time and space dependent, we derive a system of field equations consisting of a Partial Differential Equation...a system of Stochastic Differential Equations that defines how the stochasticity evolves in the time varying stochastic subspace. These new

  19. Equivalence of on-Lattice Stochastic Chemical Kinetics with the Well-Mixed Chemical Master Equation in the Limit of Fast Diffusion.

    PubMed

    Stamatakis, Michail; Vlachos, Dionisios G

    2011-12-14

    Well-mixed and lattice-based descriptions of stochastic chemical kinetics have been extensively used in the literature. Realizations of the corresponding stochastic processes are obtained by the Gillespie stochastic simulation algorithm and lattice kinetic Monte Carlo algorithms, respectively. However, the two frameworks have remained disconnected. We show the equivalence of these frameworks whereby the stochastic lattice kinetics reduces to effective well-mixed kinetics in the limit of fast diffusion. In the latter, the lattice structure appears implicitly, as the lumped rate of bimolecular reactions depends on the number of neighbors of a site on the lattice. Moreover, we propose a mapping between the stochastic propensities and the deterministic rates of the well-mixed vessel and lattice dynamics that illustrates the hierarchy of models and the key parameters that enable model reduction.

  20. Comparison of deterministic and stochastic earthquake simulators for fault interactions in the Lower Rhine Embayment, Germany

    NASA Astrophysics Data System (ADS)

    Hainzl, Sebastian; Zöller, Gert; Brietzke, Gilbert B.; Hinzen, Klaus-G.

    2013-10-01

    Time-dependent probabilistic seismic hazard assessment requires a stochastic description of earthquake occurrences. While short-term seismicity models are well-constrained by observations, the recurrences of characteristic on-fault earthquakes are only derived from theoretical considerations, uncertain palaeo-events or proxy data. Despite the involved uncertainties and complexity, simple statistical models for a quasi-period recurrence of on-fault events are implemented in seismic hazard assessments. To test the applicability of statistical models, such as the Brownian relaxation oscillator or the stress release model, we perform a systematic comparison with deterministic simulations based on rate- and state-dependent friction, high-resolution representations of fault systems and quasi-dynamic rupture propagation. For the specific fault network of the Lower Rhine Embayment, Germany, we run both stochastic and deterministic model simulations based on the same fault geometries and stress interactions. Our results indicate that the stochastic simulators are able to reproduce the first-order characteristics of the major earthquakes on isolated faults as well as for coupled faults with moderate stress interactions. However, we find that all tested statistical models fail to reproduce the characteristics of strongly coupled faults, because multisegment rupturing resulting from a spatiotemporally correlated stress field is underestimated in the stochastic simulators. Our results suggest that stochastic models have to be extended by multirupture probability distributions to provide more reliable results.

  1. Stochastic electrodynamics with particle structure part II - towards a zero-point induced wave behavior

    NASA Astrophysics Data System (ADS)

    Rueda, A.

    1993-04-01

    A previously derived Brownian behavior (paper I) induced by the zero-point field is assumed to hold for a more realistic model. The statistical description of the particle in our model leads naturally to a probabilistic fluid-like description suitable for providing simple intuitive explanations for some well-publicized puzzles of classical stochastic theories like the nodes of the wave-function and the intrinsic spinning (so far nonquantized) of the particles. We confront our result with well-known recent analysis on fractal-like Brownian quantum paths and diffusion in quantum trajectories. It is shown that stochastic electrodynamics may lead to the diffusive fractal-like paths of the Schroedinger theory. A heuristic connection from this Brownian result to Schroedinger's phenomenology is also provided by the Lagrangian density of the probabilistic fluid.

  2. From Complex to Simple: Interdisciplinary Stochastic Models

    ERIC Educational Resources Information Center

    Mazilu, D. A.; Zamora, G.; Mazilu, I.

    2012-01-01

    We present two simple, one-dimensional, stochastic models that lead to a qualitative understanding of very complex systems from biology, nanoscience and social sciences. The first model explains the complicated dynamics of microtubules, stochastic cellular highways. Using the theory of random walks in one dimension, we find analytical expressions…

  3. Stochastic Modeling of Laminar-Turbulent Transition

    NASA Technical Reports Server (NTRS)

    Rubinstein, Robert; Choudhari, Meelan

    2002-01-01

    Stochastic versions of stability equations are developed in order to develop integrated models of transition and turbulence and to understand the effects of uncertain initial conditions on disturbance growth. Stochastic forms of the resonant triad equations, a high Reynolds number asymptotic theory, and the parabolized stability equations are developed.

  4. Variational principles for stochastic fluid dynamics

    PubMed Central

    Holm, Darryl D.

    2015-01-01

    This paper derives stochastic partial differential equations (SPDEs) for fluid dynamics from a stochastic variational principle (SVP). The paper proceeds by taking variations in the SVP to derive stochastic Stratonovich fluid equations; writing their Itô representation; and then investigating the properties of these stochastic fluid models in comparison with each other, and with the corresponding deterministic fluid models. The circulation properties of the stochastic Stratonovich fluid equations are found to closely mimic those of the deterministic ideal fluid models. As with deterministic ideal flows, motion along the stochastic Stratonovich paths also preserves the helicity of the vortex field lines in incompressible stochastic flows. However, these Stratonovich properties are not apparent in the equivalent Itô representation, because they are disguised by the quadratic covariation drift term arising in the Stratonovich to Itô transformation. This term is a geometric generalization of the quadratic covariation drift term already found for scalar densities in Stratonovich's famous 1966 paper. The paper also derives motion equations for two examples of stochastic geophysical fluid dynamics; namely, the Euler–Boussinesq and quasi-geostropic approximations. PMID:27547083

  5. Variational principles for stochastic fluid dynamics.

    PubMed

    Holm, Darryl D

    2015-04-08

    This paper derives stochastic partial differential equations (SPDEs) for fluid dynamics from a stochastic variational principle (SVP). The paper proceeds by taking variations in the SVP to derive stochastic Stratonovich fluid equations; writing their Itô representation; and then investigating the properties of these stochastic fluid models in comparison with each other, and with the corresponding deterministic fluid models. The circulation properties of the stochastic Stratonovich fluid equations are found to closely mimic those of the deterministic ideal fluid models. As with deterministic ideal flows, motion along the stochastic Stratonovich paths also preserves the helicity of the vortex field lines in incompressible stochastic flows. However, these Stratonovich properties are not apparent in the equivalent Itô representation, because they are disguised by the quadratic covariation drift term arising in the Stratonovich to Itô transformation. This term is a geometric generalization of the quadratic covariation drift term already found for scalar densities in Stratonovich's famous 1966 paper. The paper also derives motion equations for two examples of stochastic geophysical fluid dynamics; namely, the Euler-Boussinesq and quasi-geostropic approximations.

  6. Stochastic and Coherence Resonance in Hippocampal Neurons

    DTIC Science & Technology

    2007-11-02

    decreases the signal to noise ratio of subthreshold synaptic inputs. Keywords - Hippocampus , neurons, stochastic resonance I. INTRODUCTION... subthreshold signals in the hippocampus ,” J. Neurophysiology , in press. [3] J. Collins C.C. Chow and T.T. Imboff, “Stochastic resonance without...nonlinear systems whereby the introduction of noise enhances the detection of subthreshold signals. Both computer simulations and experimental

  7. RHIC stochastic cooling motion control

    SciTech Connect

    Gassner, D.; DeSanto, L.; Olsen, R.H.; Fu, W.; Brennan, J.M.; Liaw, CJ; Bellavia, S.; Brodowski, J.

    2011-03-28

    Relativistic Heavy Ion Collider (RHIC) beams are subject to Intra-Beam Scattering (IBS) that causes an emittance growth in all three-phase space planes. The only way to increase integrated luminosity is to counteract IBS with cooling during RHIC stores. A stochastic cooling system for this purpose has been developed, it includes moveable pick-ups and kickers in the collider that require precise motion control mechanics, drives and controllers. Since these moving parts can limit the beam path aperture, accuracy and reliability is important. Servo, stepper, and DC motors are used to provide actuation solutions for position control. The choice of motion stage, drive motor type, and controls are based on needs defined by the variety of mechanical specifications, the unique performance requirements, and the special needs required for remote operations in an accelerator environment. In this report we will describe the remote motion control related beam line hardware, position transducers, rack electronics, and software developed for the RHIC stochastic cooling pick-ups and kickers.

  8. Stochastic Methods for Aircraft Design

    NASA Technical Reports Server (NTRS)

    Pelz, Richard B.; Ogot, Madara

    1998-01-01

    The global stochastic optimization method, simulated annealing (SA), was adapted and applied to various problems in aircraft design. The research was aimed at overcoming the problem of finding an optimal design in a space with multiple minima and roughness ubiquitous to numerically generated nonlinear objective functions. SA was modified to reduce the number of objective function evaluations for an optimal design, historically the main criticism of stochastic methods. SA was applied to many CFD/MDO problems including: low sonic-boom bodies, minimum drag on supersonic fore-bodies, minimum drag on supersonic aeroelastic fore-bodies, minimum drag on HSCT aeroelastic wings, FLOPS preliminary design code, another preliminary aircraft design study with vortex lattice aerodynamics, HSR complete aircraft aerodynamics. In every case, SA provided a simple, robust and reliable optimization method which found optimal designs in order 100 objective function evaluations. Perhaps most importantly, from this academic/industrial project, technology has been successfully transferred; this method is the method of choice for optimization problems at Northrop Grumman.

  9. Influence of stochastic domain growth on pattern nucleation for diffusive systems with internal noise

    NASA Astrophysics Data System (ADS)

    Woolley, Thomas E.; Baker, Ruth E.; Gaffney, Eamonn A.; Maini, Philip K.

    2011-10-01

    Numerous mathematical models exploring the emergence of complexity within developmental biology incorporate diffusion as the dominant mechanism of transport. However, self-organizing paradigms can exhibit the biologically undesirable property of extensive sensitivity, as illustrated by the behavior of the French-flag model in response to intrinsic noise and Turing’s model when subjected to fluctuations in initial conditions. Domain growth is known to be a stabilizing factor for the latter, though the interaction of intrinsic noise and domain growth is underexplored, even in the simplest of biophysical settings. Previously, we developed analytical Fourier methods and a description of domain growth that allowed us to characterize the effects of deterministic domain growth on stochastically diffusing systems. In this paper we extend our analysis to encompass stochastically growing domains. This form of growth can be used only to link the meso- and macroscopic domains as the “box-splitting” form of growth on the microscopic scale has an ill-defined thermodynamic limit. The extension is achieved by allowing the simulated particles to undergo random walks on a discretized domain, while stochastically controlling the length of each discretized compartment. Due to the dependence of diffusion on the domain discretization, we find that the description of diffusion cannot be uniquely derived. We apply these analytical methods to two justified descriptions, where it is shown that, under certain conditions, diffusion is able to support a consistent inhomogeneous state that is far removed from the deterministic equilibrium, without additional kinetics. Finally, a logistically growing domain is considered. Not only does this show that we can deal with nonmonotonic descriptions of stochastic growth, but it is also seen that diffusion on a stationary domain produces different effects to diffusion on a domain that is stationary “on average.”

  10. Digital program for solving the linear stochastic optimal control and estimation problem

    NASA Technical Reports Server (NTRS)

    Geyser, L. C.; Lehtinen, B.

    1975-01-01

    A computer program is described which solves the linear stochastic optimal control and estimation (LSOCE) problem by using a time-domain formulation. The LSOCE problem is defined as that of designing controls for a linear time-invariant system which is disturbed by white noise in such a way as to minimize a performance index which is quadratic in state and control variables. The LSOCE problem and solution are outlined; brief descriptions are given of the solution algorithms, and complete descriptions of each subroutine, including usage information and digital listings, are provided. A test case is included, as well as information on the IBM 7090-7094 DCS time and storage requirements.

  11. Hardware description languages

    NASA Technical Reports Server (NTRS)

    Tucker, Jerry H.

    1994-01-01

    Hardware description languages are special purpose programming languages. They are primarily used to specify the behavior of digital systems and are rapidly replacing traditional digital system design techniques. This is because they allow the designer to concentrate on how the system should operate rather than on implementation details. Hardware description languages allow a digital system to be described with a wide range of abstraction, and they support top down design techniques. A key feature of any hardware description language environment is its ability to simulate the modeled system. The two most important hardware description languages are Verilog and VHDL. Verilog has been the dominant language for the design of application specific integrated circuits (ASIC's). However, VHDL is rapidly gaining in popularity.

  12. Stochastic events may lead to accretion in Saturn's rings

    NASA Astrophysics Data System (ADS)

    Esposito, Larry W.

    Stochastic events may lead to accretion in Saturn's rings Larry W. Esposito LASP, University of Colorado UVIS occultations indicate accretion is triggered at the B ring edge, in strong density waves in ring A and in the F ring. Moons may trigger accretion by streamline crowding (Lewis & Stewart); which enhances collisions, leading to accretion; increasing random velocities; leading to more collisions and more accretion. Cassini occultations of these strongly perturbed locations show not only accretion but also disaggregation, with time scales of hours to weeks. The collisions may lead to temporary aggregations via stochastic events: collisions can compress unconsolidated objects, trigger adhesion or bring small pieces into contact with larger or higher-density seeds. Disaggregation then can follow from disruptive collisions or tidal shedding. In the accretion/disruption balance, increased random motions could eventually give the upper hand to disruption. . . just as `irrational exuberance' can lead to financial panic in the economy; or the overpopulation of hares can lead to boom-and-bust in the population of foxes. I present a simple predator-prey model. This system's unstable equilibrium can similarly give rise to episodic cycles in accretion: explaining why the observable ring features that indicate embedded objects have been increasing since the beginning of Cassini's observations of Saturn in 2004. Unlike other interpretations of the peculiar events seen near Saturn Equinox, I emphasize the kinetic description of particle interactions rather than a fluid instability approach; and the dominance of stochastic events involving individual aggregates over free and/or driven modes in a flat disk.

  13. Model reduction for stochastic chemical systems with abundant species.

    PubMed

    Smith, Stephen; Cianci, Claudia; Grima, Ramon

    2015-12-07

    Biochemical processes typically involve many chemical species, some in abundance and some in low molecule numbers. We first identify the rate constant limits under which the concentrations of a given set of species will tend to infinity (the abundant species) while the concentrations of all other species remains constant (the non-abundant species). Subsequently, we prove that, in this limit, the fluctuations in the molecule numbers of non-abundant species are accurately described by a hybrid stochastic description consisting of a chemical master equation coupled to deterministic rate equations. This is a reduced description when compared to the conventional chemical master equation which describes the fluctuations in both abundant and non-abundant species. We show that the reduced master equation can be solved exactly for a number of biochemical networks involving gene expression and enzyme catalysis, whose conventional chemical master equation description is analytically impenetrable. We use the linear noise approximation to obtain approximate expressions for the difference between the variance of fluctuations in the non-abundant species as predicted by the hybrid approach and by the conventional chemical master equation. Furthermore, we show that surprisingly, irrespective of any separation in the mean molecule numbers of various species, the conventional and hybrid master equations exactly agree for a class of chemical systems.

  14. Model reduction for stochastic chemical systems with abundant species

    SciTech Connect

    Smith, Stephen; Cianci, Claudia; Grima, Ramon

    2015-12-07

    Biochemical processes typically involve many chemical species, some in abundance and some in low molecule numbers. We first identify the rate constant limits under which the concentrations of a given set of species will tend to infinity (the abundant species) while the concentrations of all other species remains constant (the non-abundant species). Subsequently, we prove that, in this limit, the fluctuations in the molecule numbers of non-abundant species are accurately described by a hybrid stochastic description consisting of a chemical master equation coupled to deterministic rate equations. This is a reduced description when compared to the conventional chemical master equation which describes the fluctuations in both abundant and non-abundant species. We show that the reduced master equation can be solved exactly for a number of biochemical networks involving gene expression and enzyme catalysis, whose conventional chemical master equation description is analytically impenetrable. We use the linear noise approximation to obtain approximate expressions for the difference between the variance of fluctuations in the non-abundant species as predicted by the hybrid approach and by the conventional chemical master equation. Furthermore, we show that surprisingly, irrespective of any separation in the mean molecule numbers of various species, the conventional and hybrid master equations exactly agree for a class of chemical systems.

  15. Kinetic Description of Vacuum Creation of Massive Vector Bosons

    SciTech Connect

    Blaschke, D.B.; Prozorkevich, A.V.; Smolyansky, S.A.; Reichel, A.V.

    2005-06-01

    In the simple model of massive vector field in a flat spacetime, we derive the kinetic equation of non-Markovian type describing the vacuum pair creation under action of external fields of different nature. We use for this aim the nonperturbative methods of kinetic theory in combination with a new element when the transition of the instantaneous quasiparticle representation is realized within the oscillator (holomorphic) representation. We study in detail the process of vacuum creation of vector bosons generated by a time-dependent boson mass in accordance with the framework of a conformal-invariant scalar-tensor gravitational theory and its cosmological application. It is indicated that the choice of the equation of state allows one to obtain a number density of vector bosons that is sufficient to explain the observed number density of photons in the cosmic microwave background radiation.

  16. Stochastic thermodynamics for active matter

    NASA Astrophysics Data System (ADS)

    Speck, Thomas

    2016-05-01

    The theoretical understanding of active matter, which is driven out of equilibrium by directed motion, is still fragmental and model oriented. Stochastic thermodynamics, on the other hand, is a comprehensive theoretical framework for driven systems that allows to define fluctuating work and heat. We apply these definitions to active matter, assuming that dissipation can be modelled by effective non-conservative forces. We show that, through the work, conjugate extensive and intensive observables can be defined even in non-equilibrium steady states lacking a free energy. As an illustration, we derive the expressions for the pressure and interfacial tension of active Brownian particles. The latter becomes negative despite the observed stable phase separation. We discuss this apparent contradiction, highlighting the role of fluctuations, and we offer a tentative explanation.

  17. Stochastic sensing through covalent interactions

    DOEpatents

    Bayley, Hagan; Shin, Seong-Ho; Luchian, Tudor; Cheley, Stephen

    2013-03-26

    A system and method for stochastic sensing in which the analyte covalently bonds to the sensor element or an adaptor element. If such bonding is irreversible, the bond may be broken by a chemical reagent. The sensor element may be a protein, such as the engineered P.sub.SH type or .alpha.HL protein pore. The analyte may be any reactive analyte, including chemical weapons, environmental toxins and pharmaceuticals. The analyte covalently bonds to the sensor element to produce a detectable signal. Possible signals include change in electrical current, change in force, and change in fluorescence. Detection of the signal allows identification of the analyte and determination of its concentration in a sample solution. Multiple analytes present in the same solution may be detected.

  18. Thermodynamics of stochastic Turing machines.

    PubMed

    Strasberg, Philipp; Cerrillo, Javier; Schaller, Gernot; Brandes, Tobias

    2015-10-01

    In analogy to Brownian computers we explicitly show how to construct stochastic models which mimic the behavior of a general-purpose computer (a Turing machine). Our models are discrete state systems obeying a Markovian master equation, which are logically reversible and have a well-defined and consistent thermodynamic interpretation. The resulting master equation, which describes a simple one-step process on an enormously large state space, allows us to thoroughly investigate the thermodynamics of computation for this situation. Especially in the stationary regime we can well approximate the master equation by a simple Fokker-Planck equation in one dimension. We then show that the entropy production rate at steady state can be made arbitrarily small, but the total (integrated) entropy production is finite and grows logarithmically with the number of computational steps.

  19. Heuristic-biased stochastic sampling

    SciTech Connect

    Bresina, J.L.

    1996-12-31

    This paper presents a search technique for scheduling problems, called Heuristic-Biased Stochastic Sampling (HBSS). The underlying assumption behind the HBSS approach is that strictly adhering to a search heuristic often does not yield the best solution and, therefore, exploration off the heuristic path can prove fruitful. Within the HBSS approach, the balance between heuristic adherence and exploration can be controlled according to the confidence one has in the heuristic. By varying this balance, encoded as a bias function, the HBSS approach encompasses a family of search algorithms of which greedy search and completely random search are extreme members. We present empirical results from an application of HBSS to the realworld problem of observation scheduling. These results show that with the proper bias function, it can be easy to outperform greedy search.

  20. Multiscale Stochastic Simulation and Modeling

    SciTech Connect

    James Glimm; Xiaolin Li

    2006-01-10

    Acceleration driven instabilities of fluid mixing layers include the classical cases of Rayleigh-Taylor instability, driven by a steady acceleration and Richtmyer-Meshkov instability, driven by an impulsive acceleration. Our program starts with high resolution methods of numerical simulation of two (or more) distinct fluids, continues with analytic analysis of these solutions, and the derivation of averaged equations. A striking achievement has been the systematic agreement we obtained between simulation and experiment by using a high resolution numerical method and improved physical modeling, with surface tension. Our study is accompanies by analysis using stochastic modeling and averaged equations for the multiphase problem. We have quantified the error and uncertainty using statistical modeling methods.

  1. Robust stochastic mine production scheduling

    NASA Astrophysics Data System (ADS)

    Kumral, Mustafa

    2010-06-01

    The production scheduling of open pit mines aims to determine the extraction sequence of blocks such that the net present value (NPV) of a mining project is maximized under capacity and access constraints. This sequencing has significant effect on the profitability of the mining venture. However, given that the values of coefficients in the optimization procedure are obtained in a medium of sparse data and unknown future events, implementations based on deterministic models may lead to destructive consequences to the company. In this article, a robust stochastic optimization (RSO) approach is used to deal with mine production scheduling in a manner such that the solution is insensitive to changes in input data. The approach seeks a trade off between optimality and feasibility. The model is demonstrated on a case study. The findings showed that the approach can be used in mine production scheduling problems efficiently.

  2. Stochastic resonance in attention control

    NASA Astrophysics Data System (ADS)

    Kitajo, K.; Yamanaka, K.; Ward, L. M.; Yamamoto, Y.

    2006-12-01

    We investigated the beneficial role of noise in a human higher brain function, namely visual attention control. We asked subjects to detect a weak gray-level target inside a marker box either in the left or the right visual field. Signal detection performance was optimized by presenting a low level of randomly flickering gray-level noise between and outside the two possible target locations. Further, we found that an increase in eye movement (saccade) rate helped to compensate for the usual deterioration in detection performance at higher noise levels. To our knowledge, this is the first experimental evidence that noise can optimize a higher brain function which involves distinct brain regions above the level of primary sensory systems -- switching behavior between multi-stable attention states -- via the mechanism of stochastic resonance.

  3. Multiple Stochastic Point Processes in Gene Expression

    NASA Astrophysics Data System (ADS)

    Murugan, Rajamanickam

    2008-04-01

    We generalize the idea of multiple-stochasticity in chemical reaction systems to gene expression. Using Chemical Langevin Equation approach we investigate how this multiple-stochasticity can influence the overall molecular number fluctuations. We show that the main sources of this multiple-stochasticity in gene expression could be the randomness in transcription and translation initiation times which in turn originates from the underlying bio-macromolecular recognition processes such as the site-specific DNA-protein interactions and therefore can be internally regulated by the supra-molecular structural factors such as the condensation/super-coiling of DNA. Our theory predicts that (1) in case of gene expression system, the variances ( φ) introduced by the randomness in transcription and translation initiation-times approximately scales with the degree of condensation ( s) of DNA or mRNA as φ ∝ s -6. From the theoretical analysis of the Fano factor as well as coefficient of variation associated with the protein number fluctuations we predict that (2) unlike the singly-stochastic case where the Fano factor has been shown to be a monotonous function of translation rate, in case of multiple-stochastic gene expression the Fano factor is a turn over function with a definite minimum. This in turn suggests that the multiple-stochastic processes can also be well tuned to behave like a singly-stochastic point processes by adjusting the rate parameters.

  4. Minimum description length synthetic aperture radar image segmentation.

    PubMed

    Galland, Frédéric; Bertaux, Nicolas; Réfrégier, Philippe

    2003-01-01

    We present a new minimum description length (MDL) approach based on a deformable partition--a polygonal grid--for automatic segmentation of a speckled image composed of several homogeneous regions. The image segmentation thus consists in the estimation of the polygonal grid, or, more precisely, its number of regions, its number of nodes and the location of its nodes. These estimations are performed by minimizing a unique MDL criterion which takes into account the probabilistic properties of speckle fluctuations and a measure of the stochastic complexity of the polygonal grid. This approach then leads to a global MDL criterion without an undetermined parameter since no other regularization term than the stochastic complexity of the polygonal grid is necessary and noise parameters can be estimated with maximum likelihood-like approaches. The performance of this technique is illustrated on synthetic and real synthetic aperture radar images of agricultural regions and the influence of different terms of the model is analyzed.

  5. Constant-complexity stochastic simulation algorithm with optimal binning

    SciTech Connect

    Sanft, Kevin R.; Othmer, Hans G.

    2015-08-21

    At the molecular level, biochemical processes are governed by random interactions between reactant molecules, and the dynamics of such systems are inherently stochastic. When the copy numbers of reactants are large, a deterministic description is adequate, but when they are small, such systems are often modeled as continuous-time Markov jump processes that can be described by the chemical master equation. Gillespie’s Stochastic Simulation Algorithm (SSA) generates exact trajectories of these systems, but the amount of computational work required for each step of the original SSA is proportional to the number of reaction channels, leading to computational complexity that scales linearly with the problem size. The original SSA is therefore inefficient for large problems, which has prompted the development of several alternative formulations with improved scaling properties. We describe an exact SSA that uses a table data structure with event time binning to achieve constant computational complexity with respect to the number of reaction channels for weakly coupled reaction networks. We present a novel adaptive binning strategy and discuss optimal algorithm parameters. We compare the computational efficiency of the algorithm to existing methods and demonstrate excellent scaling for large problems. This method is well suited for generating exact trajectories of large weakly coupled models, including those that can be described by the reaction-diffusion master equation that arises from spatially discretized reaction-diffusion processes.

  6. Coarse-graining stochastic biochemical networks: adiabaticity and fast simulations

    SciTech Connect

    Nemenman, Ilya; Sinitsyn, Nikolai; Hengartner, Nick

    2008-01-01

    We propose a universal approach for analysis and fast simulations of stiff stochastic biochemical kinetics networks, which rests on elimination of fast chemical species without a loss of information about mesoscoplc, non-Poissonian fluctuations of the slow ones. Our approach, which is similar to the Born-Oppenhelmer approximation in quantum mechanics, follows from the stochastic path Integral representation of the cumulant generating function of reaction events. In applications with a small number of chemIcal reactions, It produces analytical expressions for cumulants of chemical fluxes between the slow variables. This allows for a low-dimensional, Interpretable representation and can be used for coarse-grained numerical simulation schemes with a small computational complexity and yet high accuracy. As an example, we derive the coarse-grained description for a chain of biochemical reactions, and show that the coarse-grained and the microscopic simulations are in an agreement, but the coarse-gralned simulations are three orders of magnitude faster.

  7. Constant-complexity stochastic simulation algorithm with optimal binning.

    PubMed

    Sanft, Kevin R; Othmer, Hans G

    2015-08-21

    At the molecular level, biochemical processes are governed by random interactions between reactant molecules, and the dynamics of such systems are inherently stochastic. When the copy numbers of reactants are large, a deterministic description is adequate, but when they are small, such systems are often modeled as continuous-time Markov jump processes that can be described by the chemical master equation. Gillespie's Stochastic Simulation Algorithm (SSA) generates exact trajectories of these systems, but the amount of computational work required for each step of the original SSA is proportional to the number of reaction channels, leading to computational complexity that scales linearly with the problem size. The original SSA is therefore inefficient for large problems, which has prompted the development of several alternative formulations with improved scaling properties. We describe an exact SSA that uses a table data structure with event time binning to achieve constant computational complexity with respect to the number of reaction channels for weakly coupled reaction networks. We present a novel adaptive binning strategy and discuss optimal algorithm parameters. We compare the computational efficiency of the algorithm to existing methods and demonstrate excellent scaling for large problems. This method is well suited for generating exact trajectories of large weakly coupled models, including those that can be described by the reaction-diffusion master equation that arises from spatially discretized reaction-diffusion processes.

  8. Stochastic hyperfine interactions modeling library-Version 2

    NASA Astrophysics Data System (ADS)

    Zacate, Matthew O.; Evenson, William E.

    2016-02-01

    The stochastic hyperfine interactions modeling library (SHIML) provides a set of routines to assist in the development and application of stochastic models of hyperfine interactions. The library provides routines written in the C programming language that (1) read a text description of a model for fluctuating hyperfine fields, (2) set up the Blume matrix, upon which the evolution operator of the system depends, and (3) find the eigenvalues and eigenvectors of the Blume matrix so that theoretical spectra of experimental techniques that measure hyperfine interactions can be calculated. The optimized vector and matrix operations of the BLAS and LAPACK libraries are utilized. The original version of SHIML constructed and solved Blume matrices for methods that measure hyperfine interactions of nuclear probes in a single spin state. Version 2 provides additional support for methods that measure interactions on two different spin states such as Mössbauer spectroscopy and nuclear resonant scattering of synchrotron radiation. Example codes are provided to illustrate the use of SHIML to (1) generate perturbed angular correlation spectra for the special case of polycrystalline samples when anisotropy terms of higher order than A22 can be neglected and (2) generate Mössbauer spectra for polycrystalline samples for pure dipole or pure quadrupole transitions.

  9. Emergence of coherent oscillations in stochastic models for circadian rhythms

    NASA Astrophysics Data System (ADS)

    Gonze, Didier; Halloy, José; Goldbeter, Albert

    2004-10-01

    Most living organisms have developed the capability of generating autonomously sustained oscillations with a period close to 24 h. The mechanism responsible for these circadian rhythms relies on the negative regulation exerted by a protein on the expression of its own gene. Deterministic models for circadian rhythms account for the occurrence of autonomous oscillations of the limit cycle type, for their entrainment by light-dark cycles, and for their phase shifting by light pulses. Such models, however, do not take into consideration the molecular fluctuations which arise when the number of molecules involved in the regulatory mechanism is low. Here we resort to a stochastic description of a core model for circadian rhythms to study the emergence of coherent oscillations in gene expression in the presence of molecular noise. We show that despite the “bar code” pattern of gene activation, robust circadian oscillations can be observed. Simulations of the deterministic, fully developed version of the circadian model indicate, however, that sustained oscillations only emerge above a critical value of the rate constants characterizing the reversible binding of repressor to the gene, while below this value the system evolves towards an excitable steady state. This explains why, depending on whether or not the critical value of these rate constants is exceeded, stochastic simulations of the model produce coherent oscillations or very noisy oscillations with a highly variable period.

  10. Motor protein mechanics: a stochastic model with minimal mechanochemical coupling.

    PubMed Central

    Duke, T; Leibler, S

    1996-01-01

    A stochastic model for the action of motor proteins such as kinesin is presented. The mechanical components of the enzyme are 1) two identical head domains that bind to discrete sites on a microtubule and that are capable of undergoing a conformational change; and 2) an elastic element that connects each head to the rest of the molecule. We investigate the situation in which the strain dependence of the chemical reaction rates is minimal and the heads have independent biochemical cycles. The enzyme advances stochastically along a filament when one head detaches and diffuses to a new binding site, while the other head remains bound to the microtubule. We also investigate the case in which the chemical cycles of the heads are correlated so that the molecule shifts each head alternately. The predictions of the model are found to be in agreement with experimentally measured force-velocity relationships for kinesin-both when the force is applied externally and when the enzyme is loaded by a viscous drag. For reasonable values of the parameters, this agreement is quantitative. The molecular stepping characteristics observed in recent motility assays are also reproduced. A number of experiments are suggested that would provide a more stringent test of the model and help determine whether this simple picture is an appropriate description of motor proteins or whether models that include strain-dependent reaction rates or more complicated types of cooperation of the two heads need to be considered. Images FIGURE 1 FIGURE 2 PMID:8873998

  11. Numerical simulation of effective mechanical properties of stochastic composites with consideration for structural evolution under intensive dynamic loading

    SciTech Connect

    Karakulov, Valerii V.; Smolin, Igor Yu. E-mail: skrp@ftf.tsu.ru; Skripnyak, Vladimir A. E-mail: skrp@ftf.tsu.ru

    2014-11-14

    Mechanical behavior of stochastic metal-ceramic composites with the aluminum matrix under high-rate deformation at shock-wave loading is numerically simulated with consideration for structural evolution. Effective values of mechanical parameters of metal-ceramic composites Aldescription='Single-Bond' name='Single-Bond' value='Single-Bond'/>B{sub 4}C, Aldescription='Single-Bond' name='Single-Bond' value='Single-Bond'/>SiC, and Aldescription='Single-Bond' name='Single-Bond' value='Single-Bond'/>Al{sub 2}O{sub 3} are evaluated depending on different concentration of ceramic inclusions.

  12. Stochastic system identification in structural dynamics

    USGS Publications Warehouse

    Safak, Erdal

    1988-01-01

    Recently, new identification methods have been developed by using the concept of optimal-recursive filtering and stochastic approximation. These methods, known as stochastic identification, are based on the statistical properties of the signal and noise, and do not require the assumptions of current methods. The criterion for stochastic system identification is that the difference between the recorded output and the output from the identified system (i.e., the residual of the identification) should be equal to white noise. In this paper, first a brief review of the theory is given. Then, an application of the method is presented by using ambient vibration data from a nine-story building.

  13. Permanence of Stochastic Lotka-Volterra Systems

    NASA Astrophysics Data System (ADS)

    Liu, Meng; Fan, Meng

    2017-04-01

    This paper proposes a new definition of permanence for stochastic population models, which overcomes some limitations and deficiency of the existing ones. Then, we explore the permanence of two-dimensional stochastic Lotka-Volterra systems in a general setting, which models several different interactions between two species such as cooperation, competition, and predation. Sharp sufficient criteria are established with the help of the Lyapunov direct method and some new techniques. This study reveals that the stochastic noises play an essential role in the permanence and characterize the systems being permanent or not.

  14. A stochastic subgrid model for sheared turbulence

    NASA Astrophysics Data System (ADS)

    Bertoglio, J. P.

    A new subgrid model for homogeneous turbulence is proposed. The model is used in a method of Large Eddy Simulation coupled with an E.D.Q.N.M. prediction of the statistical properties of the small scales. The model is stochastic in order to allow a 'disaveraging' of the informations provided by the E.D.Q.N.M. closure. It is based on stochastic amplitude equations for two-point closures. It allows backflow of energy from the small scales, introduces stochasticity into L.E.S., and is well adapted to nonisotropic fields. A few results are presented here.

  15. Connecting deterministic and stochastic metapopulation models.

    PubMed

    Barbour, A D; McVinish, R; Pollett, P K

    2015-12-01

    In this paper, we study the relationship between certain stochastic and deterministic versions of Hanski's incidence function model and the spatially realistic Levins model. We show that the stochastic version can be well approximated in a certain sense by the deterministic version when the number of habitat patches is large, provided that the presence or absence of individuals in a given patch is influenced by a large number of other patches. Explicit bounds on the deviation between the stochastic and deterministic models are given.

  16. A multilevel stochastic collocation method for SPDEs

    SciTech Connect

    Gunzburger, Max; Jantsch, Peter; Teckentrup, Aretha; Webster, Clayton

    2015-03-10

    We present a multilevel stochastic collocation method that, as do multilevel Monte Carlo methods, uses a hierarchy of spatial approximations to reduce the overall computational complexity when solving partial differential equations with random inputs. For approximation in parameter space, a hierarchy of multi-dimensional interpolants of increasing fidelity are used. Rigorous convergence and computational cost estimates for the new multilevel stochastic collocation method are derived and used to demonstrate its advantages compared to standard single-level stochastic collocation approximations as well as multilevel Monte Carlo methods.

  17. Large Deviations for Stochastic Flows of Diffeomorphisms

    DTIC Science & Technology

    2007-01-01

    be the unique solution of the ordinary differential equation ∂ηs,t(x) ∂t .= b ( ηs,t(x), t ) , ηs,s(x) = x, 0 ≤ s ≤ t ≤ 1. (5.2) Then it follows that...solving finite dimensional Itô stochastic differential equations . More precisely, suppose b, fi, i = 1, . . . ,m are functions from Rd × [0, T ] to Rd...s, T ]. This stochastic process is called the solution of Itô’s stochastic differential equation based on the Brownian motion F . From [15, Theorem

  18. Stochastic effects in a discretized kinetic model of economic exchange

    NASA Astrophysics Data System (ADS)

    Bertotti, M. L.; Chattopadhyay, A. K.; Modanese, G.

    2017-04-01

    Linear stochastic models and discretized kinetic theory are two complementary analytical techniques used for the investigation of complex systems of economic interactions. The former employ Langevin equations, with an emphasis on stock trade; the latter is based on systems of ordinary differential equations and is better suited for the description of binary interactions, taxation and welfare redistribution. We propose a new framework which establishes a connection between the two approaches by introducing random fluctuations into the kinetic model based on Langevin and Fokker-Planck formalisms. Numerical simulations of the resulting model indicate positive correlations between the Gini index and the total wealth, that suggest a growing inequality with increasing income. Further analysis shows, in the presence of a conserved total wealth, a simultaneous decrease in inequality as social mobility increases, in conformity with economic data.

  19. A Stochastic Delay Differential Model of Cerebral Autoregulation

    PubMed Central

    Panunzi, Simona; D’Orsi, Laura; Iacoviello, Daniela; De Gaetano, Andrea

    2015-01-01

    Mathematical models of the cardiovascular system and of cerebral autoregulation (CAR) have been employed for several years in order to describe the time course of pressures and flows changes subsequent to postural changes. The assessment of the degree of efficiency of cerebral auto regulation has indeed importance in the prognosis of such conditions as cerebro-vascular accidents or Alzheimer. In the quest for a simple but realistic mathematical description of cardiovascular control, which may be fitted onto non-invasive experimental observations after postural changes, the present work proposes a first version of an empirical Stochastic Delay Differential Equations (SDDEs) model. The model consists of a total of four SDDEs and two ancillary algebraic equations, incorporates four distinct delayed controls from the brain onto different components of the circulation, and is able to accurately capture the time course of mean arterial pressure and cerebral blood flow velocity signals, reproducing observed auto-correlated error around the expected drift. PMID:25830915

  20. Distinguishing signatures of determinism and stochasticity in spiking complex systems

    PubMed Central

    Aragoneses, Andrés; Rubido, Nicolás; Tiana-Alsina, Jordi; Torrent, M. C.; Masoller, Cristina

    2013-01-01

    We describe a method to infer signatures of determinism and stochasticity in the sequence of apparently random intensity dropouts emitted by a semiconductor laser with optical feedback. The method uses ordinal time-series analysis to classify experimental data of inter-dropout-intervals (IDIs) in two categories that display statistically significant different features. Despite the apparent randomness of the dropout events, one IDI category is consistent with waiting times in a resting state until noise triggers a dropout, and the other is consistent with dropouts occurring during the return to the resting state, which have a clear deterministic component. The method we describe can be a powerful tool for inferring signatures of determinism in the dynamics of complex systems in noisy environments, at an event-level description of their dynamics.

  1. Stochastic Satbility and Performance Robustness of Linear Multivariable Systems

    NASA Technical Reports Server (NTRS)

    Ryan, Laurie E.; Stengel, Robert F.

    1990-01-01

    Stochastic robustness, a simple technique used to estimate the robustness of linear, time invariant systems, is applied to a single-link robot arm control system. Concepts behind stochastic stability robustness are extended to systems with estimators and to stochastic performance robustness. Stochastic performance robustness measures based on classical design specifications are introduced, and the relationship between stochastic robustness measures and control system design parameters are discussed. The application of stochastic performance robustness, and the relationship between performance objectives and design parameters are demonstrated by means of example. The results prove stochastic robustness to be a good overall robustness analysis method that can relate robustness characteristics to control system design parameters.

  2. Stochastic pump effect and geometric phases in dissipative and stochastic systems

    SciTech Connect

    Sinitsyn, Nikolai

    2008-01-01

    The success of Berry phases in quantum mechanics stimulated the study of similar phenomena in other areas of physics, including the theory of living cell locomotion and motion of patterns in nonlinear media. More recently, geometric phases have been applied to systems operating in a strongly stochastic environment, such as molecular motors. We discuss such geometric effects in purely classical dissipative stochastic systems and their role in the theory of the stochastic pump effect (SPE).

  3. Classical analogs of quasifree quantum stochastic processes given by stochastic states of the quantized electromagnetic field

    NASA Astrophysics Data System (ADS)

    Hertfelder, C.; Kümmerer, B.

    2001-03-01

    The mathematical model describing a light beam prepared in an arbitrary quantum optical state is a quasifree quantum stochastic process on the C* algebra of the canonical commutatation relations. For such quantum stochastic processes the concept of stochastic states is introduced. Stochastic quantum states have a classical analog in the following sense: If the light beam is prepared in a stochastic state, one can construct a generalized classical stochastic process, such that the distributions of the quantum observables and the classical random variables coincide. A sufficient algebraic condition for the stochasticity of a quantum state is formulated. The introduced formalism generalizes the Wigner representation from a single field mode to a continuum of modes. For the special case of a single field mode the stochasticity condition provides a new criterion for the positivity of the Wigner function related to the given state. As an example the quantized eletromagnetic field in empty space at temperature T=0 is discussed. It turns out that the corresponding classical stochastic process is not a white noise but a colored noise with a linearly increasing spectrum.

  4. Survival analysis of stochastic competitive models in a polluted environment and stochastic competitive exclusion principle.

    PubMed

    Liu, Meng; Wang, Ke; Wu, Qiong

    2011-09-01

    Stochastic competitive models with pollution and without pollution are proposed and studied. For the first system with pollution, sufficient criteria for extinction, nonpersistence in the mean, weak persistence in the mean, strong persistence in the mean, and stochastic permanence are established. The threshold between weak persistence in the mean and extinction for each population is obtained. It is found that stochastic disturbance is favorable for the survival of one species and is unfavorable for the survival of the other species. For the second system with pollution, sufficient conditions for extinction and weak persistence are obtained. For the model without pollution, a partial stochastic competitive exclusion principle is derived.

  5. Analytical Description of Mutational Effects in Competing Asexual Populations

    PubMed Central

    Pinkel, Daniel

    2007-01-01

    The adaptation of a population to a new environment is a result of selection operating on a suite of stochastically occurring mutations. This article presents an analytical approach to understanding the population dynamics during adaptation, specifically addressing a system in which periods of growth are separated by selection in bottlenecks. The analysis derives simple expressions for the average properties of the evolving population, including a quantitative description of progressive narrowing of the range of selection coefficients of the predominant mutant cells and of the proportion of mutant cells as a function of time. A complete statistical description of the bottlenecks is also presented, leading to a description of the stochastic behavior of the population in terms of effective mutation times. The effective mutation times are related to the actual mutation times by calculable probability distributions, similar to the selection coefficients being highly restricted in their probable values. This analytical approach is used to model recently published experimental data from a bacterial coculture experiment, and the results are compared to those of a numerical model published in conjunction with the data. Finally, experimental designs that may improve measurements of fitness distributions are suggested. PMID:17947437

  6. Stochastic differential equation model to Prendiville processes

    NASA Astrophysics Data System (ADS)

    Granita, Bahar, Arifah

    2015-10-01

    The Prendiville process is another variation of the logistic model which assumes linearly decreasing population growth rate. It is a continuous time Markov chain (CTMC) taking integer values in the finite interval. The continuous time Markov chain can be approximated by stochastic differential equation (SDE). This paper discusses the stochastic differential equation of Prendiville process. The work started with the forward Kolmogorov equation in continuous time Markov chain of Prendiville process. Then it was formulated in the form of a central-difference approximation. The approximation was then used in Fokker-Planck equation in relation to the stochastic differential equation of the Prendiville process. The explicit solution of the Prendiville process was obtained from the stochastic differential equation. Therefore, the mean and variance function of the Prendiville process could be easily found from the explicit solution.

  7. Bootstrap performance profiles in stochastic algorithms assessment

    SciTech Connect

    Costa, Lino; Espírito Santo, Isabel A.C.P.; Oliveira, Pedro

    2015-03-10

    Optimization with stochastic algorithms has become a relevant research field. Due to its stochastic nature, its assessment is not straightforward and involves integrating accuracy and precision. Performance profiles for the mean do not show the trade-off between accuracy and precision, and parametric stochastic profiles require strong distributional assumptions and are limited to the mean performance for a large number of runs. In this work, bootstrap performance profiles are used to compare stochastic algorithms for different statistics. This technique allows the estimation of the sampling distribution of almost any statistic even with small samples. Multiple comparison profiles are presented for more than two algorithms. The advantages and drawbacks of each assessment methodology are discussed.

  8. Stochastic differential equation model to Prendiville processes

    SciTech Connect

    Granita; Bahar, Arifah

    2015-10-22

    The Prendiville process is another variation of the logistic model which assumes linearly decreasing population growth rate. It is a continuous time Markov chain (CTMC) taking integer values in the finite interval. The continuous time Markov chain can be approximated by stochastic differential equation (SDE). This paper discusses the stochastic differential equation of Prendiville process. The work started with the forward Kolmogorov equation in continuous time Markov chain of Prendiville process. Then it was formulated in the form of a central-difference approximation. The approximation was then used in Fokker-Planck equation in relation to the stochastic differential equation of the Prendiville process. The explicit solution of the Prendiville process was obtained from the stochastic differential equation. Therefore, the mean and variance function of the Prendiville process could be easily found from the explicit solution.

  9. Stochasticity and determinism in models of hematopoiesis.

    PubMed

    Kimmel, Marek

    2014-01-01

    This chapter represents a novel view of modeling in hematopoiesis, synthesizing both deterministic and stochastic approaches. Whereas the stochastic models work in situations where chance dominates, for example when the number of cells is small, or under random mutations, the deterministic models are more important for large-scale, normal hematopoiesis. New types of models are on the horizon. These models attempt to account for distributed environments such as hematopoietic niches and their impact on dynamics. Mixed effects of such structures and chance events are largely unknown and constitute both a challenge and promise for modeling. Our discussion is presented under the separate headings of deterministic and stochastic modeling; however, the connections between both are frequently mentioned. Four case studies are included to elucidate important examples. We also include a primer of deterministic and stochastic dynamics for the reader's use.

  10. Communication: Embedded fragment stochastic density functional theory

    SciTech Connect

    Neuhauser, Daniel; Baer, Roi; Rabani, Eran

    2014-07-28

    We develop a method in which the electronic densities of small fragments determined by Kohn-Sham density functional theory (DFT) are embedded using stochastic DFT to form the exact density of the full system. The new method preserves the scaling and the simplicity of the stochastic DFT but cures the slow convergence that occurs when weakly coupled subsystems are treated. It overcomes the spurious charge fluctuations that impair the applications of the original stochastic DFT approach. We demonstrate the new approach on a fullerene dimer and on clusters of water molecules and show that the density of states and the total energy can be accurately described with a relatively small number of stochastic orbitals.

  11. Extending stochastic network calculus to loss analysis.

    PubMed

    Luo, Chao; Yu, Li; Zheng, Jun

    2013-01-01

    Loss is an important parameter of Quality of Service (QoS). Though stochastic network calculus is a very useful tool for performance evaluation of computer networks, existing studies on stochastic service guarantees mainly focused on the delay and backlog. Some efforts have been made to analyse loss by deterministic network calculus, but there are few results to extend stochastic network calculus for loss analysis. In this paper, we introduce a new parameter named loss factor into stochastic network calculus and then derive the loss bound through the existing arrival curve and service curve via this parameter. We then prove that our result is suitable for the networks with multiple input flows. Simulations show the impact of buffer size, arrival traffic, and service on the loss factor.

  12. Stochastic structure formation in random media

    NASA Astrophysics Data System (ADS)

    Klyatskin, V. I.

    2016-01-01

    Stochastic structure formation in random media is considered using examples of elementary dynamical systems related to the two-dimensional geophysical fluid dynamics (Gaussian random fields) and to stochastically excited dynamical systems described by partial differential equations (lognormal random fields). In the latter case, spatial structures (clusters) may form with a probability of one in almost every system realization due to rare events happening with vanishing probability. Problems involving stochastic parametric excitation occur in fluid dynamics, magnetohydrodynamics, plasma physics, astrophysics, and radiophysics. A more complicated stochastic problem dealing with anomalous structures on the sea surface (rogue waves) is also considered, where the random Gaussian generation of sea surface roughness is accompanied by parametric excitation.

  13. Some stochastic aspects of intergranular creep cavitation

    SciTech Connect

    Fariborz, S.J.; Farris, J.P.; Harlow, D.G.; Delph, T.J.

    1987-10-01

    We present some results obtained from a simplified stochastic model of intergranular creep cavitation. The probabilistic features of the model arise from the inclusion of random cavity placement on the grain boundary and time-discrete stochastic cavity nucleation. Among the predictions of the model are Weibull-distributed creep rupture failure times and a Weibull distribution of cavity radii. Both of these predictions have qualitative experimental support. 18 refs., 7 figs.

  14. Stochastic Semidefinite Programming: Applications and Algorithms

    DTIC Science & Technology

    2012-03-03

    doi: 2011/09/07 13:38:21 13 TOTAL: 1 Number of Papers published in non peer-reviewed journals: Baha M. Alzalg and K. A. Ariyawansa, Stochastic...symmetric programming over integers. International Conference on Scientific Computing, Las Vegas, Nevada, July 18--21, 2011. Baha M. Alzalg. On recent...Proceeding publications (other than abstracts): PaperReceived Baha M. Alzalg, K. A. Ariyawansa. Stochastic mixed integer second-order cone programming

  15. Stochastic synchronization in finite size spiking networks.

    PubMed

    Doiron, Brent; Rinzel, John; Reyes, Alex

    2006-09-01

    We study a stochastic synchronization of spiking activity in feedforward networks of integrate-and-fire model neurons. A stochastic mean field analysis shows that synchronization occurs only when the network size is sufficiently small. This gives evidence that the dynamics, and hence processing, of finite size populations can be drastically different from that observed in the infinite size limit. Our results agree with experimentally observed synchrony in cortical networks, and further strengthen the link between synchrony and propagation in cortical systems.

  16. Complexity and synchronization in stochastic chaotic systems

    NASA Astrophysics Data System (ADS)

    Dang, Thai Son; Palit, Sanjay Kumar; Mukherjee, Sayan; Hoang, Thang Manh; Banerjee, Santo

    2016-02-01

    We investigate the complexity of a hyperchaotic dynamical system perturbed by noise and various nonlinear speech and music signals. The complexity is measured by the weighted recurrence entropy of the hyperchaotic and stochastic systems. The synchronization phenomenon between two stochastic systems with complex coupling is also investigated. These criteria are tested on chaotic and perturbed systems by mean conditional recurrence and normalized synchronization error. Numerical results including surface plots, normalized synchronization errors, complexity variations etc show the effectiveness of the proposed analysis.

  17. Optimal factory scheduling using stochastic dominance A

    SciTech Connect

    Wurman, P.R.

    1996-12-31

    Generating optimal production schedules for manufacturing facilities an area of great theoretical and practical importance. During the last decade, an effort has been made to reconcile the techniques developed by the AI and OR communities. The work described here aims to continue in this vein by showing how a class of well-defined stochastic scheduling problems can be mapped into a general search procedure. This approach improves upon other methods by handling the general case of multidimensional stochastic costs.

  18. Prediction Theory of Periodically Correlated Stochastic Processes

    DTIC Science & Technology

    2015-05-12

    SECURITY CLASSIFICATION OF: The research dealt with the prediction problem for periodically correlated sequences, that is the stochastic sequences...was to develop an alternative technique for analysis such sequences . In the first published paper we 1. REPORT DATE (DD-MM-YYYY) 4. TITLE AND...Aug-2014 Approved for Public Release; Distribution Unlimited Final Report: Prediction Theory of Periodically Correlated Stochastic Processes. The

  19. Sequential decision analysis for nonstationary stochastic processes

    NASA Technical Reports Server (NTRS)

    Schaefer, B.

    1974-01-01

    A formulation of the problem of making decisions concerning the state of nonstationary stochastic processes is given. An optimal decision rule, for the case in which the stochastic process is independent of the decisions made, is derived. It is shown that this rule is a generalization of the Bayesian likelihood ratio test; and an analog to Wald's sequential likelihood ratio test is given, in which the optimal thresholds may vary with time.

  20. Desynchronization of stochastically synchronized chemical oscillators

    SciTech Connect

    Snari, Razan; Tinsley, Mark R. E-mail: kshowalt@wvu.edu; Faramarzi, Sadegh; Showalter, Kenneth E-mail: kshowalt@wvu.edu; Wilson, Dan; Moehlis, Jeff; Netoff, Theoden Ivan

    2015-12-15

    Experimental and theoretical studies are presented on the design of perturbations that enhance desynchronization in populations of oscillators that are synchronized by periodic entrainment. A phase reduction approach is used to determine optimal perturbation timing based upon experimentally measured phase response curves. The effectiveness of the perturbation waveforms is tested experimentally in populations of periodically and stochastically synchronized chemical oscillators. The relevance of the approach to therapeutic methods for disrupting phase coherence in groups of stochastically synchronized neuronal oscillators is discussed.

  1. Stochastic Forcing for Ocean Uncertainty Prediction

    DTIC Science & Technology

    2013-09-30

    shallow water waves governed by Korteweg-de Vries ( KdV ) dynamics with stochastic forcing. Uncertain Boundary Conditions and DO Equations : A...schemes to time-integrate shallow water surface waves governed by KdV equations with external stochastic forcing. We find that the DO scheme is...free- surface primitive equation model and Error Subspace Statistical Estimation (ESSE). The variability in the pdfs are illustrated and discussed

  2. Stochastic resonance during a polymer translocation process

    NASA Astrophysics Data System (ADS)

    Mondal, Debasish; Muthukumar, M.

    2016-04-01

    We have studied the occurrence of stochastic resonance when a flexible polymer chain undergoes a single-file translocation through a nano-pore separating two spherical cavities, under a time-periodic external driving force. The translocation of the chain is controlled by a free energy barrier determined by chain length, pore length, pore-polymer interaction, and confinement inside the donor and receiver cavities. The external driving force is characterized by a frequency and amplitude. By combining the Fokker-Planck formalism for polymer translocation and a two-state model for stochastic resonance, we have derived analytical formulas for criteria for emergence of stochastic resonance during polymer translocation. We show that no stochastic resonance is possible if the free energy barrier for polymer translocation is purely entropic in nature. The polymer chain exhibits stochastic resonance only in the presence of an energy threshold in terms of polymer-pore interactions. Once stochastic resonance is feasible, the chain entropy controls the optimal synchronization conditions significantly.

  3. Stochastic learning via optimizing the variational inequalities.

    PubMed

    Tao, Qing; Gao, Qian-Kun; Chu, De-Jun; Wu, Gao-Wei

    2014-10-01

    A wide variety of learning problems can be posed in the framework of convex optimization. Many efficient algorithms have been developed based on solving the induced optimization problems. However, there exists a gap between the theoretically unbeatable convergence rate and the practically efficient learning speed. In this paper, we use the variational inequality (VI) convergence to describe the learning speed. To this end, we avoid the hard concept of regret in online learning and directly discuss the stochastic learning algorithms. We first cast the regularized learning problem as a VI. Then, we present a stochastic version of alternating direction method of multipliers (ADMMs) to solve the induced VI. We define a new VI-criterion to measure the convergence of stochastic algorithms. While the rate of convergence for any iterative algorithms to solve nonsmooth convex optimization problems cannot be better than O(1/√t), the proposed stochastic ADMM (SADMM) is proved to have an O(1/t) VI-convergence rate for the l1-regularized hinge loss problems without strong convexity and smoothness. The derived VI-convergence results also support the viewpoint that the standard online analysis is too loose to analyze the stochastic setting properly. The experiments demonstrate that SADMM has almost the same performance as the state-of-the-art stochastic learning algorithms but its O(1/t) VI-convergence rate is capable of tightly characterizing the real learning speed.

  4. Automated Flight Routing Using Stochastic Dynamic Programming

    NASA Technical Reports Server (NTRS)

    Ng, Hok K.; Morando, Alex; Grabbe, Shon

    2010-01-01

    Airspace capacity reduction due to convective weather impedes air traffic flows and causes traffic congestion. This study presents an algorithm that reroutes flights in the presence of winds, enroute convective weather, and congested airspace based on stochastic dynamic programming. A stochastic disturbance model incorporates into the reroute design process the capacity uncertainty. A trajectory-based airspace demand model is employed for calculating current and future airspace demand. The optimal routes minimize the total expected traveling time, weather incursion, and induced congestion costs. They are compared to weather-avoidance routes calculated using deterministic dynamic programming. The stochastic reroutes have smaller deviation probability than the deterministic counterpart when both reroutes have similar total flight distance. The stochastic rerouting algorithm takes into account all convective weather fields with all severity levels while the deterministic algorithm only accounts for convective weather systems exceeding a specified level of severity. When the stochastic reroutes are compared to the actual flight routes, they have similar total flight time, and both have about 1% of travel time crossing congested enroute sectors on average. The actual flight routes induce slightly less traffic congestion than the stochastic reroutes but intercept more severe convective weather.

  5. Stochastic resonance during a polymer translocation process.

    PubMed

    Mondal, Debasish; Muthukumar, M

    2016-04-14

    We have studied the occurrence of stochastic resonance when a flexible polymer chain undergoes a single-file translocation through a nano-pore separating two spherical cavities, under a time-periodic external driving force. The translocation of the chain is controlled by a free energy barrier determined by chain length, pore length, pore-polymer interaction, and confinement inside the donor and receiver cavities. The external driving force is characterized by a frequency and amplitude. By combining the Fokker-Planck formalism for polymer translocation and a two-state model for stochastic resonance, we have derived analytical formulas for criteria for emergence of stochastic resonance during polymer translocation. We show that no stochastic resonance is possible if the free energy barrier for polymer translocation is purely entropic in nature. The polymer chain exhibits stochastic resonance only in the presence of an energy threshold in terms of polymer-pore interactions. Once stochastic resonance is feasible, the chain entropy controls the optimal synchronization conditions significantly.

  6. Teaching Descriptive Style.

    ERIC Educational Resources Information Center

    Brashers, H. C.

    1968-01-01

    As the inexperienced writer becomes aware of the issues involved in the composition of effective descriptive prose, he also develops a consistent control over his materials. The persona he chooses, if coherently thought out, can function as an index of many choices, helping him to manipulate the tone, intent, and mood of this style; to regulate…

  7. Andrew integrated reservoir description

    SciTech Connect

    Todd, S.P.

    1996-12-31

    The Andrew field is an oil and gas accumulation in Palaeocene deep marine sands in the Central North Sea. It is currently being developed with mainly horizontal oil producers. Because of the field`s relatively small reserves (mean 118 mmbbls), the performance of each of the 10 or so horizontal wells is highly important. Reservoir description work at sanction time concentrated on supporting the case that the field could be developed commercially with the minimum number of wells. The present Integrated Reservoir Description (IRD) is focussed on delivering the next level of detail that will impact the understanding of the local reservoir architecture and dynamic performance of each well. Highlights of Andrew IRD Include: (1) Use of a Reservoir Uncertainty Statement (RUS) developed at sanction time to focus the descriptive effort of both asset, support and contract petrotechnical staff, (2) High resolution biostratigraphic correlation to support confident zonation of the reservoir, (3) Detailed sedimentological analysis of the core including the use of dipmeter to interpret channel/sheet architecture to provide new insights into reservoir heterogeneity; (4) Integrated petrographical and petrophysical investigation of the controls on Sw-Height and relative permeability of water; (5) Fluids description using oil geochemistry and Residual Salt Analysis Sr isotope studies. Andrew IRD has highlighted several important risks to well performance, including the influence of more heterolithic intervals on gas breakthrough and the controls on water coning exerted by suppressed water relative permeability in the transition zone.

  8. Andrew integrated reservoir description

    SciTech Connect

    Todd, S.P.

    1996-01-01

    The Andrew field is an oil and gas accumulation in Palaeocene deep marine sands in the Central North Sea. It is currently being developed with mainly horizontal oil producers. Because of the field's relatively small reserves (mean 118 mmbbls), the performance of each of the 10 or so horizontal wells is highly important. Reservoir description work at sanction time concentrated on supporting the case that the field could be developed commercially with the minimum number of wells. The present Integrated Reservoir Description (IRD) is focussed on delivering the next level of detail that will impact the understanding of the local reservoir architecture and dynamic performance of each well. Highlights of Andrew IRD Include: (1) Use of a Reservoir Uncertainty Statement (RUS) developed at sanction time to focus the descriptive effort of both asset, support and contract petrotechnical staff, (2) High resolution biostratigraphic correlation to support confident zonation of the reservoir, (3) Detailed sedimentological analysis of the core including the use of dipmeter to interpret channel/sheet architecture to provide new insights into reservoir heterogeneity; (4) Integrated petrographical and petrophysical investigation of the controls on Sw-Height and relative permeability of water; (5) Fluids description using oil geochemistry and Residual Salt Analysis Sr isotope studies. Andrew IRD has highlighted several important risks to well performance, including the influence of more heterolithic intervals on gas breakthrough and the controls on water coning exerted by suppressed water relative permeability in the transition zone.

  9. Stochastic modelling of animal movement

    PubMed Central

    Smouse, Peter E.; Focardi, Stefano; Moorcroft, Paul R.; Kie, John G.; Forester, James D.; Morales, Juan M.

    2010-01-01

    Modern animal movement modelling derives from two traditions. Lagrangian models, based on random walk behaviour, are useful for multi-step trajectories of single animals. Continuous Eulerian models describe expected behaviour, averaged over stochastic realizations, and are usefully applied to ensembles of individuals. We illustrate three modern research arenas. (i) Models of home-range formation describe the process of an animal ‘settling down’, accomplished by including one or more focal points that attract the animal's movements. (ii) Memory-based models are used to predict how accumulated experience translates into biased movement choices, employing reinforced random walk behaviour, with previous visitation increasing or decreasing the probability of repetition. (iii) Lévy movement involves a step-length distribution that is over-dispersed, relative to standard probability distributions, and adaptive in exploring new environments or searching for rare targets. Each of these modelling arenas implies more detail in the movement pattern than general models of movement can accommodate, but realistic empiric evaluation of their predictions requires dense locational data, both in time and space, only available with modern GPS telemetry. PMID:20566497

  10. Stochastic phase-change neurons

    NASA Astrophysics Data System (ADS)

    Tuma, Tomas; Pantazi, Angeliki; Le Gallo, Manuel; Sebastian, Abu; Eleftheriou, Evangelos

    2016-08-01

    Artificial neuromorphic systems based on populations of spiking neurons are an indispensable tool in understanding the human brain and in constructing neuromimetic computational systems. To reach areal and power efficiencies comparable to those seen in biological systems, electroionics-based and phase-change-based memristive devices have been explored as nanoscale counterparts of synapses. However, progress on scalable realizations of neurons has so far been limited. Here, we show that chalcogenide-based phase-change materials can be used to create an artificial neuron in which the membrane potential is represented by the phase configuration of the nanoscale phase-change device. By exploiting the physics of reversible amorphous-to-crystal phase transitions, we show that the temporal integration of postsynaptic potentials can be achieved on a nanosecond timescale. Moreover, we show that this is inherently stochastic because of the melt-quench-induced reconfiguration of the atomic structure occurring when the neuron is reset. We demonstrate the use of these phase-change neurons, and their populations, in the detection of temporal correlations in parallel data streams and in sub-Nyquist representation of high-bandwidth signals.

  11. Stochastic phase-change neurons.

    PubMed

    Tuma, Tomas; Pantazi, Angeliki; Le Gallo, Manuel; Sebastian, Abu; Eleftheriou, Evangelos

    2016-08-01

    Artificial neuromorphic systems based on populations of spiking neurons are an indispensable tool in understanding the human brain and in constructing neuromimetic computational systems. To reach areal and power efficiencies comparable to those seen in biological systems, electroionics-based and phase-change-based memristive devices have been explored as nanoscale counterparts of synapses. However, progress on scalable realizations of neurons has so far been limited. Here, we show that chalcogenide-based phase-change materials can be used to create an artificial neuron in which the membrane potential is represented by the phase configuration of the nanoscale phase-change device. By exploiting the physics of reversible amorphous-to-crystal phase transitions, we show that the temporal integration of postsynaptic potentials can be achieved on a nanosecond timescale. Moreover, we show that this is inherently stochastic because of the melt-quench-induced reconfiguration of the atomic structure occurring when the neuron is reset. We demonstrate the use of these phase-change neurons, and their populations, in the detection of temporal correlations in parallel data streams and in sub-Nyquist representation of high-bandwidth signals.

  12. Multidimensional stochastic approximation Monte Carlo

    NASA Astrophysics Data System (ADS)

    Zablotskiy, Sergey V.; Ivanov, Victor A.; Paul, Wolfgang

    2016-06-01

    Stochastic Approximation Monte Carlo (SAMC) has been established as a mathematically founded powerful flat-histogram Monte Carlo method, used to determine the density of states, g (E ) , of a model system. We show here how it can be generalized for the determination of multidimensional probability distributions (or equivalently densities of states) of macroscopic or mesoscopic variables defined on the space of microstates of a statistical mechanical system. This establishes this method as a systematic way for coarse graining a model system, or, in other words, for performing a renormalization group step on a model. We discuss the formulation of the Kadanoff block spin transformation and the coarse-graining procedure for polymer models in this language. We also apply it to a standard case in the literature of two-dimensional densities of states, where two competing energetic effects are present g (E1,E2) . We show when and why care has to be exercised when obtaining the microcanonical density of states g (E1+E2) from g (E1,E2) .

  13. Lower hybrid wavepacket stochasticity revisited

    SciTech Connect

    Fuchs, V.; Krlín, L.; Pánek, R.; Preinhaelter, J.; Seidl, J.; Urban, J.

    2014-02-12

    Analysis is presented in support of the explanation in Ref. [1] for the observation of relativistic electrons during Lower Hybrid (LH) operation in EC pre-heated plasma at the WEGA stellarator [1,2]. LH power from the WEGA TE11 circular waveguide, 9 cm diameter, un-phased, 2.45 GHz antenna, is radiated into a B≅0.5 T, Ðœ„n{sub e}≅5×10{sup 17} 1/m{sup 3} plasma at T{sub e}≅10 eV bulk temperature with an EC generated 50 keV component [1]. The fast electrons cycle around flux or drift surfaces with few collisions, sufficient for randomizing phases but insufficient for slowing fast electrons down, and thus repeatedly interact with the rf field close to the antenna mouth, gaining energy in the process. Our antenna calculations reveal a standing electric field pattern at the antenna mouth, with which we formulate the electron dynamics via a relativistic Hamiltonian. A simple approximation of the equations of motion leads to a relativistic generalization of the area-preserving Fermi-Ulam (F-U) map [3], allowing phase-space global stochasticity analysis. At typical WEGA plasma and antenna conditions, the F-U map predicts an LH driven current of about 230 A, at about 225 W of dissipated power, in good agreement with the measurements and analysis reported in [1].

  14. Stochastic models of intracellular transport

    NASA Astrophysics Data System (ADS)

    Bressloff, Paul C.; Newby, Jay M.

    2013-01-01

    The interior of a living cell is a crowded, heterogenuous, fluctuating environment. Hence, a major challenge in modeling intracellular transport is to analyze stochastic processes within complex environments. Broadly speaking, there are two basic mechanisms for intracellular transport: passive diffusion and motor-driven active transport. Diffusive transport can be formulated in terms of the motion of an overdamped Brownian particle. On the other hand, active transport requires chemical energy, usually in the form of adenosine triphosphate hydrolysis, and can be direction specific, allowing biomolecules to be transported long distances; this is particularly important in neurons due to their complex geometry. In this review a wide range of analytical methods and models of intracellular transport is presented. In the case of diffusive transport, narrow escape problems, diffusion to a small target, confined and single-file diffusion, homogenization theory, and fractional diffusion are considered. In the case of active transport, Brownian ratchets, random walk models, exclusion processes, random intermittent search processes, quasi-steady-state reduction methods, and mean-field approximations are considered. Applications include receptor trafficking, axonal transport, membrane diffusion, nuclear transport, protein-DNA interactions, virus trafficking, and the self-organization of subcellular structures.

  15. Stochastic modelling and predictability: analysis of a low-order coupled ocean–atmosphere model

    PubMed Central

    Vannitsem, Stéphane

    2014-01-01

    There is a growing interest in developing stochastic schemes for the description of processes that are poorly represented in atmospheric and climate models, in order to increase their variability and reduce the impact of model errors. The use of such noise could however have adverse effects by modifying in undesired ways a certain number of moments of their probability distributions. In this work, the impact of developing a stochastic scheme (based on stochastic averaging) for the ocean is explored in the context of a low-order coupled (deterministic) ocean–atmosphere system. After briefly analysing its variability, its ability in predicting the oceanic flow generated by the coupled system is investigated. Different phases in the error dynamics are found: for short lead times, an initial overdispersion of the ensemble forecast is present while the ensemble mean follows a dynamics reminiscent of the combined amplification of initial condition and model errors for deterministic systems; for longer lead times, a reliable diffusive ensemble spread is observed. These different phases are also found for ensemble-oriented skill measures like the Brier score and the rank histogram. The implications of these features on building stochastic models are then briefly discussed. PMID:24842037

  16. Stochastic modelling and predictability: analysis of a low-order coupled ocean-atmosphere model.

    PubMed

    Vannitsem, Stéphane

    2014-06-28

    There is a growing interest in developing stochastic schemes for the description of processes that are poorly represented in atmospheric and climate models, in order to increase their variability and reduce the impact of model errors. The use of such noise could however have adverse effects by modifying in undesired ways a certain number of moments of their probability distributions. In this work, the impact of developing a stochastic scheme (based on stochastic averaging) for the ocean is explored in the context of a low-order coupled (deterministic) ocean-atmosphere system. After briefly analysing its variability, its ability in predicting the oceanic flow generated by the coupled system is investigated. Different phases in the error dynamics are found: for short lead times, an initial overdispersion of the ensemble forecast is present while the ensemble mean follows a dynamics reminiscent of the combined amplification of initial condition and model errors for deterministic systems; for longer lead times, a reliable diffusive ensemble spread is observed. These different phases are also found for ensemble-oriented skill measures like the Brier score and the rank histogram. The implications of these features on building stochastic models are then briefly discussed.

  17. Inference for Stochastic Chemical Kinetics Using Moment Equations and System Size Expansion

    PubMed Central

    Thomas, Philipp; Kazeroonian, Atefeh; Theis, Fabian J.; Grima, Ramon; Hasenauer, Jan

    2016-01-01

    Quantitative mechanistic models are valuable tools for disentangling biochemical pathways and for achieving a comprehensive understanding of biological systems. However, to be quantitative the parameters of these models have to be estimated from experimental data. In the presence of significant stochastic fluctuations this is a challenging task as stochastic simulations are usually too time-consuming and a macroscopic description using reaction rate equations (RREs) is no longer accurate. In this manuscript, we therefore consider moment-closure approximation (MA) and the system size expansion (SSE), which approximate the statistical moments of stochastic processes and tend to be more precise than macroscopic descriptions. We introduce gradient-based parameter optimization methods and uncertainty analysis methods for MA and SSE. Efficiency and reliability of the methods are assessed using simulation examples as well as by an application to data for Epo-induced JAK/STAT signaling. The application revealed that even if merely population-average data are available, MA and SSE improve parameter identifiability in comparison to RRE. Furthermore, the simulation examples revealed that the resulting estimates are more reliable for an intermediate volume regime. In this regime the estimation error is reduced and we propose methods to determine the regime boundaries. These results illustrate that inference using MA and SSE is feasible and possesses a high sensitivity. PMID:27447730

  18. Stochastic thermodynamics of single enzymes and molecular motors.

    PubMed

    Seifert, U

    2011-03-01

    For a single enzyme or molecular motor operating in an aqueous solution of non-equilibrated solute concentrations, a thermodynamic description is developed on the level of an individual trajectory of transitions between states. The concept of internal energy, intrinsic entropy and free energy for states follows from a microscopic description using one assumption on time scale separation. A first-law energy balance then allows the unique identification of the heat dissipated in one transition. Consistency with the second law on the ensemble level enforces both stochastic entropy as third contribution to the entropy change involved in one transition and the local detailed balance condition for the ratio between forward and backward rates for any transition. These results follow without assuming weak coupling between the enzyme and the solutes, ideal solution behavior or mass action law kinetics. The present approach highlights both the crucial role of the intrinsic entropy of each state and the physically questionable role of chemiostats for deriving the first law for molecular motors subject to an external force under realistic conditions.

  19. Stochastic Model for the Vocabulary Growth in Natural Languages

    NASA Astrophysics Data System (ADS)

    Gerlach, Martin; Altmann, Eduardo G.

    2013-04-01

    We propose a stochastic model for the number of different words in a given database which incorporates the dependence on the database size and historical changes. The main feature of our model is the existence of two different classes of words: (i) a finite number of core words, which have higher frequency and do not affect the probability of a new word to be used, and (ii) the remaining virtually infinite number of noncore words, which have lower frequency and, once used, reduce the probability of a new word to be used in the future. Our model relies on a careful analysis of the Google Ngram database of books published in the last centuries, and its main consequence is the generalization of Zipf’s and Heaps’ law to two-scaling regimes. We confirm that these generalizations yield the best simple description of the data among generic descriptive models and that the two free parameters depend only on the language but not on the database. From the point of view of our model, the main change on historical time scales is the composition of the specific words included in the finite list of core words, which we observe to decay exponentially in time with a rate of approximately 30 words per year for English.

  20. Reasoning about scene descriptions

    SciTech Connect

    DiManzo, M.; Adorni, G.; Giunchiglia, F.

    1986-07-01

    When a scene is described by means of natural language sentences, many details are usually omitted, because they are not in the focus of the conversation. Moreover, natural language is not the best tool to define precisely positions and spatial relationships. The process of interpreting ambiguous statements and inferring missing details involves many types of knowledge, from linguistics to physics. This paper is mainly concerned with the problem of modeling the process of understanding descriptions of static scenes. The specific topics covered by this work are the analysis of the meaning of spatial prepositions, the problem of the reference system and dimensionality, the activation of expectations about unmentioned objects, the role of default knowledge about object positions and its integration with contextual information sources, and the problem of space representation. The issue of understanding dynamic scenes descriptions is briefly approached in the last section.