Solution for the nonuniformity correction of infrared focal plane arrays.

PubMed

Zhou, Huixin; Liu, Shangqian; Lai, Rui; Wang, Dabao; Cheng, Yubao

2005-05-20

Based on the S-curve model of the detector response of infrared focal plan arrays (IRFPAs), an improved two-point correction algorithm is presented. The algorithm first transforms the nonlinear image data into linear data and then uses the normal two-point algorithm to correct the linear data. The algorithm can effectively overcome the influence of nonlinearity of the detector's response, and it enlarges the correction precision and the dynamic range of the response. A real-time imaging-signal-processing system for IRFPAs that is based on a digital signal processor and field-programmable gate arrays is also presented. The nonuniformity correction capability of the presented solution is validated by experimental imaging procedures of a 128 x 128 pixel IRFPA camera prototype.

Improved neural network based scene-adaptive nonuniformity correction method for infrared focal plane arrays.

PubMed

Lai, Rui; Yang, Yin-tang; Zhou, Duan; Li, Yue-jin

2008-08-20

An improved scene-adaptive nonuniformity correction (NUC) algorithm for infrared focal plane arrays (IRFPAs) is proposed. This method simultaneously estimates the infrared detectors' parameters and eliminates the nonuniformity causing fixed pattern noise (FPN) by using a neural network (NN) approach. In the learning process of neuron parameter estimation, the traditional LMS algorithm is substituted with the newly presented variable step size (VSS) normalized least-mean square (NLMS) based adaptive filtering algorithm, which yields faster convergence, smaller misadjustment, and lower computational cost. In addition, a new NN structure is designed to estimate the desired target value, which promotes the calibration precision considerably. The proposed NUC method reaches high correction performance, which is validated by the experimental results quantitatively tested with a simulative testing sequence and a real infrared image sequence.

Generalized algebraic scene-based nonuniformity correction algorithm.

PubMed

Ratliff, Bradley M; Hayat, Majeed M; Tyo, J Scott

2005-02-01

A generalization of a recently developed algebraic scene-based nonuniformity correction algorithm for focal plane array (FPA) sensors is presented. The new technique uses pairs of image frames exhibiting arbitrary one- or two-dimensional translational motion to compute compensator quantities that are then used to remove nonuniformity in the bias of the FPA response. Unlike its predecessor, the generalization does not require the use of either a blackbody calibration target or a shutter. The algorithm has a low computational overhead, lending itself to real-time hardware implementation. The high-quality correction ability of this technique is demonstrated through application to real IR data from both cooled and uncooled infrared FPAs. A theoretical and experimental error analysis is performed to study the accuracy of the bias compensator estimates in the presence of two main sources of error.

Implementation and performance of shutterless uncooled micro-bolometer cameras

NASA Astrophysics Data System (ADS)

Das, J.; de Gaspari, D.; Cornet, P.; Deroo, P.; Vermeiren, J.; Merken, P.

2015-06-01

A shutterless algorithm is implemented into the Xenics LWIR thermal cameras and modules. Based on a calibration set and a global temperature coefficient the optimal non-uniformity correction is calculated onboard of the camera. The limited resources in the camera require a compact algorithm, hence the efficiency of the coding is important. The performance of the shutterless algorithm is studied by a comparison of the residual non-uniformity (RNU) and signal-to-noise ratio (SNR) between the shutterless and shuttered correction algorithm. From this comparison we conclude that the shutterless correction is only slightly less performant compared to the standard shuttered algorithm, making this algorithm very interesting for thermal infrared applications where small weight and size, and continuous operation are important.

An improved non-uniformity correction algorithm and its hardware implementation on FPGA

NASA Astrophysics Data System (ADS)

Rong, Shenghui; Zhou, Huixin; Wen, Zhigang; Qin, Hanlin; Qian, Kun; Cheng, Kuanhong

2017-09-01

The Non-uniformity of Infrared Focal Plane Arrays (IRFPA) severely degrades the infrared image quality. An effective non-uniformity correction (NUC) algorithm is necessary for an IRFPA imaging and application system. However traditional scene-based NUC algorithm suffers the image blurring and artificial ghosting. In addition, few effective hardware platforms have been proposed to implement corresponding NUC algorithms. Thus, this paper proposed an improved neural-network based NUC algorithm by the guided image filter and the projection-based motion detection algorithm. First, the guided image filter is utilized to achieve the accurate desired image to decrease the artificial ghosting. Then a projection-based moving detection algorithm is utilized to determine whether the correction coefficients should be updated or not. In this way the problem of image blurring can be overcome. At last, an FPGA-based hardware design is introduced to realize the proposed NUC algorithm. A real and a simulated infrared image sequences are utilized to verify the performance of the proposed algorithm. Experimental results indicated that the proposed NUC algorithm can effectively eliminate the fix pattern noise with less image blurring and artificial ghosting. The proposed hardware design takes less logic elements in FPGA and spends less clock cycles to process one frame of image.

Scene-based nonuniformity correction algorithm based on interframe registration.

PubMed

Zuo, Chao; Chen, Qian; Gu, Guohua; Sui, Xiubao

2011-06-01

In this paper, we present a simple and effective scene-based nonuniformity correction (NUC) method for infrared focal plane arrays based on interframe registration. This method estimates the global translation between two adjacent frames and minimizes the mean square error between the two properly registered images to make any two detectors with the same scene produce the same output value. In this way, the accumulation of the registration error can be avoided and the NUC can be achieved. The advantages of the proposed algorithm lie in its low computational complexity and storage requirements and ability to capture temporal drifts in the nonuniformity parameters. The performance of the proposed technique is thoroughly studied with infrared image sequences with simulated nonuniformity and infrared imagery with real nonuniformity. It shows a significantly fast and reliable fixed-pattern noise reduction and obtains an effective frame-by-frame adaptive estimation of each detector's gain and offset.

Correction of rotational distortion for catheter-based en face OCT and OCT angiography

PubMed Central

Ahsen, Osman O.; Lee, Hsiang-Chieh; Giacomelli, Michael G.; Wang, Zhao; Liang, Kaicheng; Tsai, Tsung-Han; Potsaid, Benjamin; Mashimo, Hiroshi; Fujimoto, James G.

2015-01-01

We demonstrate a computationally efficient method for correcting the nonuniform rotational distortion (NURD) in catheter-based imaging systems to improve endoscopic en face optical coherence tomography (OCT) and OCT angiography. The method performs nonrigid registration using fiducial markers on the catheter to correct rotational speed variations. Algorithm performance is investigated with an ultrahigh-speed endoscopic OCT system and micromotor catheter. Scan nonuniformity is quantitatively characterized, and artifacts from rotational speed variations are significantly reduced. Furthermore, we present endoscopic en face OCT and OCT angiography images of human gastrointestinal tract in vivo to demonstrate the image quality improvement using the correction algorithm. PMID:25361133

Single image non-uniformity correction using compressive sensing

NASA Astrophysics Data System (ADS)

Jian, Xian-zhong; Lu, Rui-zhi; Guo, Qiang; Wang, Gui-pu

2016-05-01

A non-uniformity correction (NUC) method for an infrared focal plane array imaging system was proposed. The algorithm, based on compressive sensing (CS) of single image, overcame the disadvantages of "ghost artifacts" and bulk calculating costs in traditional NUC algorithms. A point-sampling matrix was designed to validate the measurements of CS on the time domain. The measurements were corrected using the midway infrared equalization algorithm, and the missing pixels were solved with the regularized orthogonal matching pursuit algorithm. Experimental results showed that the proposed method can reconstruct the entire image with only 25% pixels. A small difference was found between the correction results using 100% pixels and the reconstruction results using 40% pixels. Evaluation of the proposed method on the basis of the root-mean-square error, peak signal-to-noise ratio, and roughness index (ρ) proved the method to be robust and highly applicable.

Simultaneous digital super-resolution and nonuniformity correction for infrared imaging systems.

PubMed

Meza, Pablo; Machuca, Guillermo; Torres, Sergio; Martin, Cesar San; Vera, Esteban

2015-07-20

In this article, we present a novel algorithm to achieve simultaneous digital super-resolution and nonuniformity correction from a sequence of infrared images. We propose to use spatial regularization terms that exploit nonlocal means and the absence of spatial correlation between the scene and the nonuniformity noise sources. We derive an iterative optimization algorithm based on a gradient descent minimization strategy. Results from infrared image sequences corrupted with simulated and real fixed-pattern noise show a competitive performance compared with state-of-the-art methods. A qualitative analysis on the experimental results obtained with images from a variety of infrared cameras indicates that the proposed method provides super-resolution images with significantly less fixed-pattern noise.

Recursive algorithms for bias and gain nonuniformity correction in infrared videos.

PubMed

Pipa, Daniel R; da Silva, Eduardo A B; Pagliari, Carla L; Diniz, Paulo S R

2012-12-01

Infrared focal-plane array (IRFPA) detectors suffer from fixed-pattern noise (FPN) that degrades image quality, which is also known as spatial nonuniformity. FPN is still a serious problem, despite recent advances in IRFPA technology. This paper proposes new scene-based correction algorithms for continuous compensation of bias and gain nonuniformity in FPA sensors. The proposed schemes use recursive least-square and affine projection techniques that jointly compensate for both the bias and gain of each image pixel, presenting rapid convergence and robustness to noise. The synthetic and real IRFPA videos experimentally show that the proposed solutions are competitive with the state-of-the-art in FPN reduction, by presenting recovered images with higher fidelity.

Radiometrically accurate scene-based nonuniformity correction for array sensors.

PubMed

Ratliff, Bradley M; Hayat, Majeed M; Tyo, J Scott

2003-10-01

A novel radiometrically accurate scene-based nonuniformity correction (NUC) algorithm is described. The technique combines absolute calibration with a recently reported algebraic scene-based NUC algorithm. The technique is based on the following principle: First, detectors that are along the perimeter of the focal-plane array are absolutely calibrated; then the calibration is transported to the remaining uncalibrated interior detectors through the application of the algebraic scene-based algorithm, which utilizes pairs of image frames exhibiting arbitrary global motion. The key advantage of this technique is that it can obtain radiometric accuracy during NUC without disrupting camera operation. Accurate estimates of the bias nonuniformity can be achieved with relatively few frames, which can be fewer than ten frame pairs. Advantages of this technique are discussed, and a thorough performance analysis is presented with use of simulated and real infrared imagery.

The evaluation of correction algorithms of intensity nonuniformity in breast MRI images: a phantom study

NASA Astrophysics Data System (ADS)

Borys, Damian; Serafin, Wojciech; Gorczewski, Kamil; Kijonka, Marek; Frackiewicz, Mariusz; Palus, Henryk

2018-04-01

The aim of this work was to test the most popular and essential algorithms of the intensity nonuniformity correction of the breast MRI imaging. In this type of MRI imaging, especially in the proximity of the coil, the signal is strong but also can produce some inhomogeneities. Evaluated methods of signal correction were: N3, N3FCM, N4, Nonparametric, and SPM. For testing purposes, a uniform phantom object was used to obtain test images using breast imaging MRI coil. To quantify the results, two measures were used: integral uniformity and standard deviation. For each algorithm minimum, average and maximum values of both evaluation factors have been calculated using the binary mask created for the phantom. In the result, two methods obtained the lowest values in these measures: N3FCM and N4, however, for the second method visually phantom was the most uniform after correction.

Correction of photoresponse nonuniformity for matrix detectors based on prior compensation for their nonlinear behavior.

PubMed

Ferrero, Alejandro; Campos, Joaquin; Pons, Alicia

2006-04-10

What we believe to be a novel procedure to correct the nonuniformity that is inherent in all matrix detectors has been developed and experimentally validated. This correction method, unlike other nonuniformity-correction algorithms, consists of two steps that separate two of the usual problems that affect characterization of matrix detectors, i.e., nonlinearity and the relative variation of the pixels' responsivity across the array. The correction of the nonlinear behavior remains valid for any illumination wavelength employed, as long as the nonlinearity is not due to power dependence of the internal quantum efficiency. This method of correction of nonuniformity permits the immediate calculation of the correction factor for any given power level and for any illuminant that has a known spectral content once the nonuniform behavior has been characterized for a sufficient number of wavelengths. This procedure has a significant advantage compared with other traditional calibration-based methods, which require that a full characterization be carried out for each spectral distribution pattern of the incident optical radiation. The experimental application of this novel method has achieved a 20-fold increase in the uniformity of a CCD array for response levels close to saturation.

Restoration of MRI Data for Field Nonuniformities using High Order Neighborhood Statistics

PubMed Central

Hadjidemetriou, Stathis; Studholme, Colin; Mueller, Susanne; Weiner, Michael; Schuff, Norbert

2007-01-01

MRI at high magnetic fields (> 3.0 T ) is complicated by strong inhomogeneous radio-frequency fields, sometimes termed the “bias field”. These lead to nonuniformity of image intensity, greatly complicating further analysis such as registration and segmentation. Existing methods for bias field correction are effective for 1.5 T or 3.0 T MRI, but are not completely satisfactory for higher field data. This paper develops an effective bias field correction for high field MRI based on the assumption that the nonuniformity is smoothly varying in space. Also, nonuniformity is quantified and unmixed using high order neighborhood statistics of intensity cooccurrences. They are computed within spherical windows of limited size over the entire image. The restoration is iterative and makes use of a novel stable stopping criterion that depends on the scaled entropy of the cooccurrence statistics, which is a non monotonic function of the iterations; the Shannon entropy of the cooccurrence statistics normalized to the effective dynamic range of the image. The algorithm restores whole head data, is robust to intense nonuniformities present in high field acquisitions, and is robust to variations in anatomy. This algorithm significantly improves bias field correction in comparison to N3 on phantom 1.5 T head data and high field 4 T human head data. PMID:18193095

Noise Power Spectrum Measurements in Digital Imaging With Gain Nonuniformity Correction.

PubMed

Kim, Dong Sik

2016-08-01

The noise power spectrum (NPS) of an image sensor provides the spectral noise properties needed to evaluate sensor performance. Hence, measuring an accurate NPS is important. However, the fixed pattern noise from the sensor's nonuniform gain inflates the NPS, which is measured from images acquired by the sensor. Detrending the low-frequency fixed pattern is traditionally used to accurately measure NPS. However, detrending methods cannot remove high-frequency fixed patterns. In order to efficiently correct the fixed pattern noise, a gain-correction technique based on the gain map can be used. The gain map is generated using the average of uniformly illuminated images without any objects. Increasing the number of images n for averaging can reduce the remaining photon noise in the gain map and yield accurate NPS values. However, for practical finite n , the photon noise also significantly inflates NPS. In this paper, a nonuniform-gain image formation model is proposed and the performance of the gain correction is theoretically analyzed in terms of the signal-to-noise ratio (SNR). It is shown that the SNR is O(√n) . An NPS measurement algorithm based on the gain map is then proposed for any given n . Under a weak nonuniform gain assumption, another measurement algorithm based on the image difference is also proposed. For real radiography image detectors, the proposed algorithms are compared with traditional detrending and subtraction methods, and it is shown that as few as two images ( n=1 ) can provide an accurate NPS because of the compensation constant (1+1/n) .

Correction of aeroheating-induced intensity nonuniformity in infrared images

NASA Astrophysics Data System (ADS)

Liu, Li; Yan, Luxin; Zhao, Hui; Dai, Xiaobing; Zhang, Tianxu

2016-05-01

Aeroheating-induced intensity nonuniformity effects severely influence the effective performance of an infrared (IR) imaging system in high-speed flight. In this paper, we propose a new approach to the correction of intensity nonuniformity in IR images. The basic assumption is that the low-frequency intensity bias is additive and smoothly varying so that it can be modeled as a bivariate polynomial and estimated by using an isotropic total variation (TV) model. A half quadratic penalty method is applied to the isotropic form of TV discretization. And an alternating minimization algorithm is adopted for solving the optimization model. The experimental results of simulated and real aerothermal images show that the proposed correction method can effectively improve IR image quality.

Reduction of Non-uniform Beam Filling Effects by Vertical Decorrelation: Theory and Simulations

NASA Technical Reports Server (NTRS)

Short, David; Nakagawa, Katsuhiro; Iguchi, Toshio

2013-01-01

Algorithms for estimating precipitation rates from spaceborne radar observations of apparent radar reflectivity depend on attenuation correction procedures. The algorithm suite for the Ku-band precipitation radar aboard the Tropical Rainfall Measuring Mission satellite is one such example. The well-known problem of nonuniform beam filling is a source of error in the estimates, especially in regions where intense deep convection occurs. The error is caused by unresolved horizontal variability in precipitation characteristics such as specific attenuation, rain rate, and effective reflectivity factor. This paper proposes the use of vertical decorrelation for correcting the nonuniform beam filling error developed under the assumption of a perfect vertical correlation. Empirical tests conducted using ground-based radar observations in the current simulation study show that decorrelation effects are evident in tilted convective cells. However, the problem of obtaining reasonable estimates of a governing parameter from the satellite data remains unresolved.

Single-image-based solution for optics temperature-dependent nonuniformity correction in an uncooled long-wave infrared camera.

PubMed

Cao, Yanpeng; Tisse, Christel-Loic

2014-02-01

In this Letter, we propose an efficient and accurate solution to remove temperature-dependent nonuniformity effects introduced by the imaging optics. This single-image-based approach computes optics-related fixed pattern noise (FPN) by fitting the derivatives of correction model to the gradient components, locally computed on an infrared image. A modified bilateral filtering algorithm is applied to local pixel output variations, so that the refined gradients are most likely caused by the nonuniformity associated with optics. The estimated bias field is subtracted from the raw infrared imagery to compensate the intensity variations caused by optics. The proposed method is fundamentally different from the existing nonuniformity correction (NUC) techniques developed for focal plane arrays (FPAs) and provides an essential image processing functionality to achieve completely shutterless NUC for uncooled long-wave infrared (LWIR) imaging systems.

Joint de-blurring and nonuniformity correction method for infrared microscopy imaging

NASA Astrophysics Data System (ADS)

Jara, Anselmo; Torres, Sergio; Machuca, Guillermo; Ramírez, Wagner; Gutiérrez, Pablo A.; Viafora, Laura A.; Godoy, Sebastián E.; Vera, Esteban

2018-05-01

In this work, we present a new technique to simultaneously reduce two major degradation artifacts found in mid-wavelength infrared microscopy imagery, namely the inherent focal-plane array nonuniformity noise and the scene defocus presented due to the point spread function of the infrared microscope. We correct both nuisances using a novel, recursive method that combines the constant range nonuniformity correction algorithm with a frame-by-frame deconvolution approach. The ability of the method to jointly compensate for both nonuniformity noise and blur is demonstrated using two different real mid-wavelength infrared microscopic video sequences, which were captured from two microscopic living organisms using a Janos-Sofradir mid-wavelength infrared microscopy setup. The performance of the proposed method is assessed on real and simulated infrared data by computing the root mean-square error and the roughness-laplacian pattern index, which was specifically developed for the present work.

Ripple FPN reduced algorithm based on temporal high-pass filter and hardware implementation

NASA Astrophysics Data System (ADS)

Li, Yiyang; Li, Shuo; Zhang, Zhipeng; Jin, Weiqi; Wu, Lei; Jin, Minglei

2016-11-01

Cooled infrared detector arrays always suffer from undesired Ripple Fixed-Pattern Noise (FPN) when observe the scene of sky. The Ripple Fixed-Pattern Noise seriously affect the imaging quality of thermal imager, especially for small target detection and tracking. It is hard to eliminate the FPN by the Calibration based techniques and the current scene-based nonuniformity algorithms. In this paper, we present a modified space low-pass and temporal high-pass nonuniformity correction algorithm using adaptive time domain threshold (THP&GM). The threshold is designed to significantly reduce ghosting artifacts. We test the algorithm on real infrared in comparison to several previously published methods. This algorithm not only can effectively correct common FPN such as Stripe, but also has obviously advantage compared with the current methods in terms of detail protection and convergence speed, especially for Ripple FPN correction. Furthermore, we display our architecture with a prototype built on a Xilinx Virtex-5 XC5VLX50T field-programmable gate array (FPGA). The hardware implementation of the algorithm based on FPGA has two advantages: (1) low resources consumption, and (2) small hardware delay (less than 20 lines). The hardware has been successfully applied in actual system.

A novel scene-based non-uniformity correction method for SWIR push-broom hyperspectral sensors

NASA Astrophysics Data System (ADS)

Hu, Bin-Lin; Hao, Shi-Jing; Sun, De-Xin; Liu, Yin-Nian

2017-09-01

A novel scene-based non-uniformity correction (NUC) method for short-wavelength infrared (SWIR) push-broom hyperspectral sensors is proposed and evaluated. This method relies on the assumption that for each band there will be ground objects with similar reflectance to form uniform regions when a sufficient number of scanning lines are acquired. The uniform regions are extracted automatically through a sorting algorithm, and are used to compute the corresponding NUC coefficients. SWIR hyperspectral data from airborne experiment are used to verify and evaluate the proposed method, and results show that stripes in the scenes have been well corrected without any significant information loss, and the non-uniformity is less than 0.5%. In addition, the proposed method is compared to two other regular methods, and they are evaluated based on their adaptability to the various scenes, non-uniformity, roughness and spectral fidelity. It turns out that the proposed method shows strong adaptability, high accuracy and efficiency.

Comparison of Quantum Dots-in-a-Double-Well and Quantum Dots-in-a-Well Focal Plane Arrays in the Long-Wave Infrared

DTIC Science & Technology

2011-07-01

taken with the same camera head, operating temperature, range of calibrated blackbody illuminations, and using the same long-wavelength IR ( LWIR ) f/2...measurements shown in this article and are tabulated for comparison purposes only. Images were taken with all four devices using an f/2 LWIR lens (8–12 μm...These were acquired after a nonuniformity correction. A custom image-scaling algorithm was used to avoid the standard nonuniformity corrected scaling

Shading correction algorithm for cone-beam CT in radiotherapy: extensive clinical validation of image quality improvement

NASA Astrophysics Data System (ADS)

Joshi, K. D.; Marchant, T. E.; Moore, C. J.

2017-03-01

A shading correction algorithm for the improvement of cone-beam CT (CBCT) images (Phys. Med. Biol. 53 5719{33) has been further developed, optimised and validated extensively using 135 clinical CBCT images of patients undergoing radiotherapy treatment of the pelvis, lungs and head and neck. An automated technique has been developed to efficiently analyse the large number of clinical images. Small regions of similar tissue (for example fat tissue) are automatically identified using CT images. The same regions on the corresponding CBCT image are analysed to ensure that they do not contain pixels representing multiple types of tissue. The mean value of all selected pixels and the non-uniformity, defined as the median absolute deviation of the mean values in each small region, are calculated. Comparisons between CT and raw and corrected CBCT images are then made. Analysis of fat regions in pelvis images shows an average difference in mean pixel value between CT and CBCT of 136:0 HU in raw CBCT images, which is reduced to 2:0 HU after the application of the shading correction algorithm. The average difference in non-uniformity of fat pixels is reduced from 33:7 in raw CBCT to 2:8 in shading-corrected CBCT images. Similar results are obtained in the analysis of lung and head and neck images.

Analysis and correction of gradient nonlinearity bias in apparent diffusion coefficient measurements.

PubMed

Malyarenko, Dariya I; Ross, Brian D; Chenevert, Thomas L

2014-03-01

Gradient nonlinearity of MRI systems leads to spatially dependent b-values and consequently high non-uniformity errors (10-20%) in apparent diffusion coefficient (ADC) measurements over clinically relevant field-of-views. This work seeks practical correction procedure that effectively reduces observed ADC bias for media of arbitrary anisotropy in the fewest measurements. All-inclusive bias analysis considers spatial and time-domain cross-terms for diffusion and imaging gradients. The proposed correction is based on rotation of the gradient nonlinearity tensor into the diffusion gradient frame where spatial bias of b-matrix can be approximated by its Euclidean norm. Correction efficiency of the proposed procedure is numerically evaluated for a range of model diffusion tensor anisotropies and orientations. Spatial dependence of nonlinearity correction terms accounts for the bulk (75-95%) of ADC bias for FA = 0.3-0.9. Residual ADC non-uniformity errors are amplified for anisotropic diffusion. This approximation obviates need for full diffusion tensor measurement and diagonalization to derive a corrected ADC. Practical scenarios are outlined for implementation of the correction on clinical MRI systems. The proposed simplified correction algorithm appears sufficient to control ADC non-uniformity errors in clinical studies using three orthogonal diffusion measurements. The most efficient reduction of ADC bias for anisotropic medium is achieved with non-lab-based diffusion gradients. Copyright © 2013 Wiley Periodicals, Inc.

Analysis and correction of gradient nonlinearity bias in ADC measurements

PubMed Central

Malyarenko, Dariya I.; Ross, Brian D.; Chenevert, Thomas L.

2013-01-01

Purpose Gradient nonlinearity of MRI systems leads to spatially-dependent b-values and consequently high non-uniformity errors (10–20%) in ADC measurements over clinically relevant field-of-views. This work seeks practical correction procedure that effectively reduces observed ADC bias for media of arbitrary anisotropy in the fewest measurements. Methods All-inclusive bias analysis considers spatial and time-domain cross-terms for diffusion and imaging gradients. The proposed correction is based on rotation of the gradient nonlinearity tensor into the diffusion gradient frame where spatial bias of b-matrix can be approximated by its Euclidean norm. Correction efficiency of the proposed procedure is numerically evaluated for a range of model diffusion tensor anisotropies and orientations. Results Spatial dependence of nonlinearity correction terms accounts for the bulk (75–95%) of ADC bias for FA = 0.3–0.9. Residual ADC non-uniformity errors are amplified for anisotropic diffusion. This approximation obviates need for full diffusion tensor measurement and diagonalization to derive a corrected ADC. Practical scenarios are outlined for implementation of the correction on clinical MRI systems. Conclusions The proposed simplified correction algorithm appears sufficient to control ADC non-uniformity errors in clinical studies using three orthogonal diffusion measurements. The most efficient reduction of ADC bias for anisotropic medium is achieved with non-lab-based diffusion gradients. PMID:23794533

Scene-based nonuniformity correction with reduced ghosting using a gated LMS algorithm.

PubMed

Hardie, Russell C; Baxley, Frank; Brys, Brandon; Hytla, Patrick

2009-08-17

In this paper, we present a scene-based nouniformity correction (NUC) method using a modified adaptive least mean square (LMS) algorithm with a novel gating operation on the updates. The gating is designed to significantly reduce ghosting artifacts produced by many scene-based NUC algorithms by halting updates when temporal variation is lacking. We define the algorithm and present a number of experimental results to demonstrate the efficacy of the proposed method in comparison to several previously published methods including other LMS and constant statistics based methods. The experimental results include simulated imagery and a real infrared image sequence. We show that the proposed method significantly reduces ghosting artifacts, but has a slightly longer convergence time. (c) 2009 Optical Society of America

A pipelined architecture for real time correction of non-uniformity in infrared focal plane arrays imaging system using multiprocessors

NASA Astrophysics Data System (ADS)

Zou, Liang; Fu, Zhuang; Zhao, YanZheng; Yang, JunYan

2010-07-01

This paper proposes a kind of pipelined electric circuit architecture implemented in FPGA, a very large scale integrated circuit (VLSI), which efficiently deals with the real time non-uniformity correction (NUC) algorithm for infrared focal plane arrays (IRFPA). Dual Nios II soft-core processors and a DSP with a 64+ core together constitute this image system. Each processor undertakes own systematic task, coordinating its work with each other's. The system on programmable chip (SOPC) in FPGA works steadily under the global clock frequency of 96Mhz. Adequate time allowance makes FPGA perform NUC image pre-processing algorithm with ease, which has offered favorable guarantee for the work of post image processing in DSP. And at the meantime, this paper presents a hardware (HW) and software (SW) co-design in FPGA. Thus, this systematic architecture yields an image processing system with multiprocessor, and a smart solution to the satisfaction with the performance of the system.

Adaptive scene-based correction algorithm for removal of residual fixed pattern noise in microgrid image data

NASA Astrophysics Data System (ADS)

Ratliff, Bradley M.; LeMaster, Daniel A.

2012-06-01

Pixel-to-pixel response nonuniformity is a common problem that affects nearly all focal plane array sensors. This results in a frame-to-frame fixed pattern noise (FPN) that causes an overall degradation in collected data. FPN is often compensated for through the use of blackbody calibration procedures; however, FPN is a particularly challenging problem because the detector responsivities drift relative to one another in time, requiring that the sensor be recalibrated periodically. The calibration process is obstructive to sensor operation and is therefore only performed at discrete intervals in time. Thus, any drift that occurs between calibrations (along with error in the calibration sources themselves) causes varying levels of residual calibration error to be present in the data at all times. Polarimetric microgrid sensors are particularly sensitive to FPN due to the spatial differencing involved in estimating the Stokes vector images. While many techniques exist in the literature to estimate FPN for conventional video sensors, few have been proposed to address the problem in microgrid imaging sensors. Here we present a scene-based nonuniformity correction technique for microgrid sensors that is able to reduce residual fixed pattern noise while preserving radiometry under a wide range of conditions. The algorithm requires a low number of temporal data samples to estimate the spatial nonuniformity and is computationally efficient. We demonstrate the algorithm's performance using real data from the AFRL PIRATE and University of Arizona LWIR microgrid sensors.

[Techniques for pixel response nonuniformity correction of CCD in interferential imaging spectrometer].

PubMed

Yao, Tao; Yin, Shi-Min; Xiangli, Bin; Lü, Qun-Bo

2010-06-01

Based on in-depth analysis of the relative radiation scaling theorem and acquired scaling data of pixel response nonuniformity correction of CCD (charge-coupled device) in spaceborne visible interferential imaging spectrometer, a pixel response nonuniformity correction method of CCD adapted to visible and infrared interferential imaging spectrometer system was studied out, and it availably resolved the engineering technical problem of nonuniformity correction in detector arrays for interferential imaging spectrometer system. The quantitative impact of CCD nonuniformity on interferogram correction and recovery spectrum accuracy was given simultaneously. Furthermore, an improved method with calibration and nonuniformity correction done after the instrument is successfully assembled was proposed. The method can save time and manpower. It can correct nonuniformity caused by other reasons in spectrometer system besides CCD itself's nonuniformity, can acquire recalibration data when working environment is changed, and can also more effectively improve the nonuniformity calibration accuracy of interferential imaging

Scene-based nonuniformity correction for focal plane arrays by the method of the inverse covariance form.

PubMed

Torres, Sergio N; Pezoa, Jorge E; Hayat, Majeed M

2003-10-10

What is to our knowledge a new scene-based algorithm for nonuniformity correction in infrared focal-plane array sensors has been developed. The technique is based on the inverse covariance form of the Kalman filter (KF), which has been reported previously and used in estimating the gain and bias of each detector in the array from scene data. The gain and the bias of each detector in the focal-plane array are assumed constant within a given sequence of frames, corresponding to a certain time and operational conditions, but they are allowed to randomly drift from one sequence to another following a discrete-time Gauss-Markov process. The inverse covariance form filter estimates the gain and the bias of each detector in the focal-plane array and optimally updates them as they drift in time. The estimation is performed with considerably higher computational efficiency than the equivalent KF. The ability of the algorithm in compensating for fixed-pattern noise in infrared imagery and in reducing the computational complexity is demonstrated by use of both simulated and real data.

A post-reconstruction method to correct cupping artifacts in cone beam breast computed tomography

PubMed Central

Altunbas, M. C.; Shaw, C. C.; Chen, L.; Lai, C.; Liu, X.; Han, T.; Wang, T.

2007-01-01

In cone beam breast computed tomography (CT), scattered radiation leads to nonuniform biasing of CT numbers known as a cupping artifact. Besides being visual distractions, cupping artifacts appear as background nonuniformities, which impair efficient gray scale windowing and pose a problem in threshold based volume visualization/segmentation. To overcome this problem, we have developed a background nonuniformity correction method specifically designed for cone beam breast CT. With this technique, the cupping artifact is modeled as an additive background signal profile in the reconstructed breast images. Due to the largely circularly symmetric shape of a typical breast, the additive background signal profile was also assumed to be circularly symmetric. The radial variation of the background signals were estimated by measuring the spatial variation of adipose tissue signals in front view breast images. To extract adipose tissue signals in an automated manner, a signal sampling scheme in polar coordinates and a background trend fitting algorithm were implemented. The background fits compared with targeted adipose tissue signal value (constant throughout the breast volume) to get an additive correction value for each tissue voxel. To test the accuracy, we applied the technique to cone beam CT images of mastectomy specimens. After correction, the images demonstrated significantly improved signal uniformity in both front and side view slices. The reduction of both intra-slice and inter-slice variations in adipose tissue CT numbers supported our observations. PMID:17822018

Blind deconvolution post-processing of images corrected by adaptive optics

NASA Astrophysics Data System (ADS)

Christou, Julian C.

1995-08-01

Experience with the adaptive optics system at the Starfire Optical Range has shown that the point spread function is non-uniform and varies both spatially and temporally as well as being object dependent. Because of this, the application of a standard linear and non-linear deconvolution algorithms make it difficult to deconvolve out the point spread function. In this paper we demonstrate the application of a blind deconvolution algorithm to adaptive optics compensated data where a separate point spread function is not needed.

In-situ calibration of nonuniformity in infrared staring and modulated systems

NASA Astrophysics Data System (ADS)

Black, Wiley T.

Infrared cameras can directly measure the apparent temperature of objects, providing thermal imaging. However, the raw output from most infrared cameras suffers from a strong, often limiting noise source called nonuniformity. Manufacturing imperfections in infrared focal planes lead to high pixel-to-pixel sensitivity to electronic bias, focal plane temperature, and other effects. The resulting imagery can only provide useful thermal imaging after a nonuniformity calibration has been performed. Traditionally, these calibrations are performed by momentarily blocking the field of view with a at temperature plate or blackbody cavity. However because the pattern is a coupling of manufactured sensitivities with operational variations, periodic recalibration is required, sometimes on the order of tens of seconds. A class of computational methods called Scene-Based Nonuniformity Correction (SBNUC) has been researched for over 20 years where the nonuniformity calibration is estimated in digital processing by analysis of the video stream in the presence of camera motion. The most sophisticated SBNUC methods can completely and robustly eliminate the high-spatial frequency component of nonuniformity with only an initial reference calibration or potentially no physical calibration. I will demonstrate a novel algorithm that advances these SBNUC techniques to support all spatial frequencies of nonuniformity correction. Long-wave infrared microgrid polarimeters are a class of camera that incorporate a microscale per-pixel wire-grid polarizer directly affixed to each pixel of the focal plane. These cameras have the capability of simultaneously measuring thermal imagery and polarization in a robust integrated package with no moving parts. I will describe the necessary adaptations of my SBNUC method to operate on this class of sensor as well as demonstrate SBNUC performance in LWIR polarimetry video collected on the UA mall.

Long-term reproducibility of phantom signal intensities in nonuniformity corrected STIR-MRI examinations of skeletal muscle.

PubMed

Viddeleer, Alain R; Sijens, Paul E; van Ooijen, Peter M A; Kuypers, Paul D L; Hovius, Steven E R; Oudkerk, Matthijs

2009-08-01

Nerve regeneration could be monitored by comparing MRI image intensities in time, as denervated muscles display increased signal intensity in STIR sequences. In this study long-term reproducibility of STIR image intensity was assessed under clinical conditions and the required image intensity nonuniformity correction was improved by using phantom scans obtained at multiple positions. Three-dimensional image intensity nonuniformity was investigated in phantom scans. Next, over a three-year period, 190 clinical STIR hand scans were obtained using a standardized acquisition protocol, and corrected for intensity nonuniformity by using the results of phantom scanning. The results of correction with 1, 3, and 11 phantom scans were compared. The image intensities in calibration tubes close to the hands were measured every time to determine the reproducibility of our method. With calibration, the reproducibility of STIR image intensity improved from 7.8 to 6.4%. Image intensity nonuniformity correction with 11 phantom scans gave significantly better results than correction with 1 or 3 scans. The image intensities in clinical STIR images acquired at different times can be compared directly, provided that the acquisition protocol is standardized and that nonuniformity correction is applied. Nonuniformity correction is preferably based on multiple phantom scans.

Multimodel Kalman filtering for adaptive nonuniformity correction in infrared sensors.

PubMed

Pezoa, Jorge E; Hayat, Majeed M; Torres, Sergio N; Rahman, Md Saifur

2006-06-01

We present an adaptive technique for the estimation of nonuniformity parameters of infrared focal-plane arrays that is robust with respect to changes and uncertainties in scene and sensor characteristics. The proposed algorithm is based on using a bank of Kalman filters in parallel. Each filter independently estimates state variables comprising the gain and the bias matrices of the sensor, according to its own dynamic-model parameters. The supervising component of the algorithm then generates the final estimates of the state variables by forming a weighted superposition of all the estimates rendered by each Kalman filter. The weights are computed and updated iteratively, according to the a posteriori-likelihood principle. The performance of the estimator and its ability to compensate for fixed-pattern noise is tested using both simulated and real data obtained from two cameras operating in the mid- and long-wave infrared regime.

Pattern-projected schlieren imaging method using a diffractive optics element

NASA Astrophysics Data System (ADS)

Min, Gihyeon; Lee, Byung-Tak; Kim, Nac Woo; Lee, Munseob

2018-04-01

We propose a novel schlieren imaging method by projecting a random dot pattern, which is generated in a light source module that includes a diffractive optical element. All apparatuses are located in the source side, which leads to one-body sensor applications. This pattern is distorted by the deflections of schlieren objects such that the displacement vectors of random dots in the pixels can be obtained using the particle image velocity algorithm. The air turbulences induced by a burning candle, boiling pot, heater, and gas torch were successfully imaged, and it was shown that imaging up to a size of 0.7 m  ×  0.57 m is possible. An algorithm to correct the non-uniform sensitivity according to the position of a schlieren object was analytically derived. This algorithm was applied to schlieren images of lenses. Comparing the corrected versions to the original schlieren images, we showed a corrected uniform sensitivity of 14.15 times on average.

Detection of defects on apple using B-spline lighting correction method

NASA Astrophysics Data System (ADS)

Li, Jiangbo; Huang, Wenqian; Guo, Zhiming

To effectively extract defective areas in fruits, the uneven intensity distribution that was produced by the lighting system or by part of the vision system in the image must be corrected. A methodology was used to convert non-uniform intensity distribution on spherical objects into a uniform intensity distribution. A basically plane image with the defective area having a lower gray level than this plane was obtained by using proposed algorithms. Then, the defective areas can be easily extracted by a global threshold value. The experimental results with a 94.0% classification rate based on 100 apple images showed that the proposed algorithm was simple and effective. This proposed method can be applied to other spherical fruits.

Variance-reduction normalization technique for a compton camera system

NASA Astrophysics Data System (ADS)

Kim, S. M.; Lee, J. S.; Kim, J. H.; Seo, H.; Kim, C. H.; Lee, C. S.; Lee, S. J.; Lee, M. C.; Lee, D. S.

2011-01-01

For an artifact-free dataset, pre-processing (known as normalization) is needed to correct inherent non-uniformity of detection property in the Compton camera which consists of scattering and absorbing detectors. The detection efficiency depends on the non-uniform detection efficiency of the scattering and absorbing detectors, different incidence angles onto the detector surfaces, and the geometry of the two detectors. The correction factor for each detected position pair which is referred to as the normalization coefficient, is expressed as a product of factors representing the various variations. The variance-reduction technique (VRT) for a Compton camera (a normalization method) was studied. For the VRT, the Compton list-mode data of a planar uniform source of 140 keV was generated from a GATE simulation tool. The projection data of a cylindrical software phantom were normalized with normalization coefficients determined from the non-uniformity map, and then reconstructed by an ordered subset expectation maximization algorithm. The coefficient of variations and percent errors of the 3-D reconstructed images showed that the VRT applied to the Compton camera provides an enhanced image quality and the increased recovery rate of uniformity in the reconstructed image.

MRI intensity nonuniformity correction using simultaneously spatial and gray-level histogram information.

PubMed

Milles, Julien; Zhu, Yue Min; Gimenez, Gérard; Guttmann, Charles R G; Magnin, Isabelle E

2007-03-01

A novel approach for correcting intensity nonuniformity in magnetic resonance imaging (MRI) is presented. This approach is based on the simultaneous use of spatial and gray-level histogram information. Spatial information about intensity nonuniformity is obtained using cubic B-spline smoothing. Gray-level histogram information of the image corrupted by intensity nonuniformity is exploited from a frequential point of view. The proposed correction method is illustrated using both physical phantom and human brain images. The results are consistent with theoretical prediction, and demonstrate a new way of dealing with intensity nonuniformity problems. They are all the more significant as the ground truth on intensity nonuniformity is unknown in clinical images.

MRI image plane nonuniformity in evaluation of ferrous sulphate dosimeter gel (FeGel) by means of T1-relaxation time.

PubMed

Magnusson, P; Bäck, S A; Olsson, L E

1999-11-01

MR image nonuniformity can vary significantly with the spin-echo pulse sequence repetition time. When MR images with different nonuniformity shapes are used in a T1-calculation the resulting T1-image becomes nonuniform. As shown in this work the uniformity TR-dependence of the spin-echo pulse sequence is a critical property for T1 measurements in general and for ferrous sulfate dosimeter gel (FeGel) applications in particular. The purpose was to study the characteristics of the MR image plane nonuniformity in FeGel evaluation. This included studies of the possibility of decreasing nonuniformities by selecting uniformity optimized repetition times, studies of the transmitted and received RF-fields and studies of the effectiveness of the correction methods background subtraction and quotient correction. A pronounced MR image nonuniformity variation with repetition and T1 relaxation time was observed, and was found to originate from nonuniform RF-transmission in combination with the inherent differences in T1 relaxation for different repetition times. The T1 calculation itself, the uniformity optimized repetition times, nor none of the correction methods studied could sufficiently correct the nonuniformities observed in the T1 images. The nonuniformities were found to vary considerably less with inversion time for the inversion-recovery pulse sequence, than with repetition time for the spin-echo pulse sequence, resulting in considerably lower T1 image nonuniformity levels.

Spectral reconstruction of signals from periodic nonuniform subsampling based on a Nyquist folding scheme

NASA Astrophysics Data System (ADS)

Jiang, Kaili; Zhu, Jun; Tang, Bin

2017-12-01

Periodic nonuniform sampling occurs in many applications, and the Nyquist folding receiver (NYFR) is an efficient, low complexity, and broadband spectrum sensing architecture. In this paper, we first derive that the radio frequency (RF) sample clock function of NYFR is periodic nonuniform. Then, the classical results of periodic nonuniform sampling are applied to NYFR. We extend the spectral reconstruction algorithm of time series decomposed model to the subsampling case by using the spectrum characteristics of NYFR. The subsampling case is common for broadband spectrum surveillance. Finally, we take example for a LFM signal under large bandwidth to verify the proposed algorithm and compare the spectral reconstruction algorithm with orthogonal matching pursuit (OMP) algorithm.

Staircase-scene-based nonuniformity correction in aerial point target detection systems.

PubMed

Huo, Lijun; Zhou, Dabiao; Wang, Dejiang; Liu, Rang; He, Bin

2016-09-01

Focal-plane arrays (FPAs) are often interfered by heavy fixed-pattern noise, which severely degrades the detection rate and increases the false alarms in airborne point target detection systems. Thus, high-precision nonuniformity correction is an essential preprocessing step. In this paper, a new nonuniformity correction method is proposed based on a staircase scene. This correction method can compensate for the nonlinear response of the detector and calibrate the entire optical system with computational efficiency and implementation simplicity. Then, a proof-of-concept point target detection system is established with a long-wave Sofradir FPA. Finally, the local standard deviation of the corrected image and the signal-to-clutter ratio of the Airy disk of a Boeing B738 are measured to evaluate the performance of the proposed nonuniformity correction method. Our experimental results demonstrate that the proposed correction method achieves high-quality corrections.

Fisheye camera method for spatial non-uniformity corrections in luminous flux measurements with integrating spheres

NASA Astrophysics Data System (ADS)

Kokka, Alexander; Pulli, Tomi; Poikonen, Tuomas; Askola, Janne; Ikonen, Erkki

2017-08-01

This paper presents a fisheye camera method for determining spatial non-uniformity corrections in luminous flux measurements with integrating spheres. Using a fisheye camera installed into a port of an integrating sphere, the relative angular intensity distribution of the lamp under test is determined. This angular distribution is used for calculating the spatial non-uniformity correction for the lamp when combined with the spatial responsivity data of the sphere. The method was validated by comparing it to a traditional goniophotometric approach when determining spatial correction factors for 13 LED lamps with different angular spreads. The deviations between the spatial correction factors obtained using the two methods ranged from -0.15 % to 0.15%. The mean magnitude of the deviations was 0.06%. For a typical LED lamp, the expanded uncertainty (k = 2 ) for the spatial non-uniformity correction factor was evaluated to be 0.28%. The fisheye camera method removes the need for goniophotometric measurements in determining spatial non-uniformity corrections, thus resulting in considerable system simplification. Generally, no permanent modifications to existing integrating spheres are required.

Improved calibration-based non-uniformity correction method for uncooled infrared camera

NASA Astrophysics Data System (ADS)

Liu, Chengwei; Sui, Xiubao

2017-08-01

With the latest improvements of microbolometer focal plane arrays (FPA), uncooled infrared (IR) cameras are becoming the most widely used devices in thermography, especially in handheld devices. However the influences derived from changing ambient condition and the non-uniform response of the sensors make it more difficult to correct the nonuniformity of uncooled infrared camera. In this paper, based on the infrared radiation characteristic in the TEC-less uncooled infrared camera, a novel model was proposed for calibration-based non-uniformity correction (NUC). In this model, we introduce the FPA temperature, together with the responses of microbolometer under different ambient temperature to calculate the correction parameters. Based on the proposed model, we can work out the correction parameters with the calibration measurements under controlled ambient condition and uniform blackbody. All correction parameters can be determined after the calibration process and then be used to correct the non-uniformity of the infrared camera in real time. This paper presents the detail of the compensation procedure and the performance of the proposed calibration-based non-uniformity correction method. And our method was evaluated on realistic IR images obtained by a 384x288 pixels uncooled long wave infrared (LWIR) camera operated under changed ambient condition. The results show that our method can exclude the influence caused by the changed ambient condition, and ensure that the infrared camera has a stable performance.

Simple, Fast and Effective Correction for Irradiance Spatial Nonuniformity in Measurement of IVs of Large Area Cells at NREL

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moriarty, Tom

The NREL cell measurement lab measures the IV parameters of cells of multiple sizes and configurations. A large contributing factor to errors and uncertainty in Jsc, Imax, Pmax and efficiency can be the irradiance spatial nonuniformity. Correcting for this nonuniformity through its precise and frequent measurement can be very time consuming. This paper explains a simple, fast and effective method based on bicubic interpolation for determining and correcting for spatial nonuniformity and verification of the method's efficacy.

HYMOSS signal processing for pushbroom spectral imaging

NASA Technical Reports Server (NTRS)

Ludwig, David E.

1991-01-01

The objective of the Pushbroom Spectral Imaging Program was to develop on-focal plane electronics which compensate for detector array non-uniformities. The approach taken was to implement a simple two point calibration algorithm on focal plane which allows for offset and linear gain correction. The key on focal plane features which made this technique feasible was the use of a high quality transimpedance amplifier (TIA) and an analog-to-digital converter for each detector channel. Gain compensation is accomplished by varying the feedback capacitance of the integrate and dump TIA. Offset correction is performed by storing offsets in a special on focal plane offset register and digitally subtracting the offsets from the readout data during the multiplexing operation. A custom integrated circuit was designed, fabricated, and tested on this program which proved that nonuniformity compensated, analog-to-digital converting circuits may be used to read out infrared detectors. Irvine Sensors Corporation (ISC) successfully demonstrated the following innovative on-focal-plane functions that allow for correction of detector non-uniformities. Most of the circuit functions demonstrated on this program are finding their way onto future IC's because of their impact on reduced downstream processing, increased focal plane performance, simplified focal plane control, reduced number of dewar connections, as well as the noise immunity of a digital interface dewar. The potential commercial applications for this integrated circuit are primarily in imaging systems. These imaging systems may be used for: security monitoring systems, manufacturing process monitoring, robotics, and for spectral imaging when used in analytical instrumentation.

HYMOSS signal processing for pushbroom spectral imaging

NASA Astrophysics Data System (ADS)

Ludwig, David E.

1991-06-01

The objective of the Pushbroom Spectral Imaging Program was to develop on-focal plane electronics which compensate for detector array non-uniformities. The approach taken was to implement a simple two point calibration algorithm on focal plane which allows for offset and linear gain correction. The key on focal plane features which made this technique feasible was the use of a high quality transimpedance amplifier (TIA) and an analog-to-digital converter for each detector channel. Gain compensation is accomplished by varying the feedback capacitance of the integrate and dump TIA. Offset correction is performed by storing offsets in a special on focal plane offset register and digitally subtracting the offsets from the readout data during the multiplexing operation. A custom integrated circuit was designed, fabricated, and tested on this program which proved that nonuniformity compensated, analog-to-digital converting circuits may be used to read out infrared detectors. Irvine Sensors Corporation (ISC) successfully demonstrated the following innovative on-focal-plane functions that allow for correction of detector non-uniformities. Most of the circuit functions demonstrated on this program are finding their way onto future IC's because of their impact on reduced downstream processing, increased focal plane performance, simplified focal plane control, reduced number of dewar connections, as well as the noise immunity of a digital interface dewar. The potential commercial applications for this integrated circuit are primarily in imaging systems. These imaging systems may be used for: security monitoring systems, manufacturing process monitoring, robotics, and for spectral imaging when used in analytical instrumentation.

Non-uniform cosine modulated filter banks using meta-heuristic algorithms in CSD space.

PubMed

Kalathil, Shaeen; Elias, Elizabeth

2015-11-01

This paper presents an efficient design of non-uniform cosine modulated filter banks (CMFB) using canonic signed digit (CSD) coefficients. CMFB has got an easy and efficient design approach. Non-uniform decomposition can be easily obtained by merging the appropriate filters of a uniform filter bank. Only the prototype filter needs to be designed and optimized. In this paper, the prototype filter is designed using window method, weighted Chebyshev approximation and weighted constrained least square approximation. The coefficients are quantized into CSD, using a look-up-table. The finite precision CSD rounding, deteriorates the filter bank performances. The performances of the filter bank are improved using suitably modified meta-heuristic algorithms. The different meta-heuristic algorithms which are modified and used in this paper are Artificial Bee Colony algorithm, Gravitational Search algorithm, Harmony Search algorithm and Genetic algorithm and they result in filter banks with less implementation complexity, power consumption and area requirements when compared with those of the conventional continuous coefficient non-uniform CMFB.

Non-uniform cosine modulated filter banks using meta-heuristic algorithms in CSD space

PubMed Central

Kalathil, Shaeen; Elias, Elizabeth

2014-01-01

This paper presents an efficient design of non-uniform cosine modulated filter banks (CMFB) using canonic signed digit (CSD) coefficients. CMFB has got an easy and efficient design approach. Non-uniform decomposition can be easily obtained by merging the appropriate filters of a uniform filter bank. Only the prototype filter needs to be designed and optimized. In this paper, the prototype filter is designed using window method, weighted Chebyshev approximation and weighted constrained least square approximation. The coefficients are quantized into CSD, using a look-up-table. The finite precision CSD rounding, deteriorates the filter bank performances. The performances of the filter bank are improved using suitably modified meta-heuristic algorithms. The different meta-heuristic algorithms which are modified and used in this paper are Artificial Bee Colony algorithm, Gravitational Search algorithm, Harmony Search algorithm and Genetic algorithm and they result in filter banks with less implementation complexity, power consumption and area requirements when compared with those of the conventional continuous coefficient non-uniform CMFB. PMID:26644921

Scene-based nonuniformity correction and enhancement: pixel statistics and subpixel motion.

PubMed

Zhao, Wenyi; Zhang, Chao

2008-07-01

We propose a framework for scene-based nonuniformity correction (NUC) and nonuniformity correction and enhancement (NUCE) that is required for focal-plane array-like sensors to obtain clean and enhanced-quality images. The core of the proposed framework is a novel registration-based nonuniformity correction super-resolution (NUCSR) method that is bootstrapped by statistical scene-based NUC methods. Based on a comprehensive imaging model and an accurate parametric motion estimation, we are able to remove severe/structured nonuniformity and in the presence of subpixel motion to simultaneously improve image resolution. One important feature of our NUCSR method is the adoption of a parametric motion model that allows us to (1) handle many practical scenarios where parametric motions are present and (2) carry out perfect super-resolution in principle by exploring available subpixel motions. Experiments with real data demonstrate the efficiency of the proposed NUCE framework and the effectiveness of the NUCSR method.

Evaluation of corrective reconstruction methods using a 3D cardiac-torso phantom and bull's-eye plots

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhao, X.D.; Tsui, B.M.W.; Gregoriou, G.K.

The goal of the investigation was to study the effectiveness of the corrective reconstruction methods in cardiac SPECT using a realistic phantom and to qualitatively and quantitatively evaluate the reconstructed images using bull's-eye plots. A 3D mathematical phantom which realistically models the anatomical structures of the cardiac-torso region of patients was used. The phantom allows simulation of both the attenuation distribution and the uptake of radiopharmaceuticals in different organs. Also, the phantom can be easily modified to simulate different genders and variations in patient anatomy. Two-dimensional projection data were generated from the phantom and included the effects of attenuation andmore » detector response blurring. The reconstruction methods used in the study included the conventional filtered backprojection (FBP) with no attenuation compensation, and the first-order Chang algorithm, an iterative filtered backprojection algorithm (IFBP), the weighted least square conjugate gradient algorithm and the ML-EM algorithm with non-uniform attenuation compensation. The transaxial reconstructed images were rearranged into short-axis slices from which bull's-eye plots of the count density distribution in the myocardium were generated.« less

Improved image quality of cone beam CT scans for radiotherapy image guidance using fiber-interspaced antiscatter grid

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stankovic, Uros; Herk, Marcel van; Ploeger, Lennert S.

Purpose: Medical linear accelerator mounted cone beam CT (CBCT) scanner provides useful soft tissue contrast for purposes of image guidance in radiotherapy. The presence of extensive scattered radiation has a negative effect on soft tissue visibility and uniformity of CBCT scans. Antiscatter grids (ASG) are used in the field of diagnostic radiography to mitigate the scatter. They usually do increase the contrast of the scan, but simultaneously increase the noise. Therefore, and considering other scatter mitigation mechanisms present in a CBCT scanner, the applicability of ASGs with aluminum interspacing for a wide range of imaging conditions has been inconclusive inmore » previous studies. In recent years, grids using fiber interspacers have appeared, providing grids with higher scatter rejection while maintaining reasonable transmission of primary radiation. The purpose of this study was to evaluate the impact of one such grid on CBCT image quality. Methods: The grid used (Philips Medical Systems) had ratio of 21:1, frequency 36 lp/cm, and nominal selectivity of 11.9. It was mounted on the kV flat panel detector of an Elekta Synergy linear accelerator and tested in a phantom and a clinical study. Due to the flex of the linac and presence of gridline artifacts an angle dependent gain correction algorithm was devised to mitigate resulting artifacts. Scan reconstruction was performed using XVI4.5 augmented with inhouse developed image lag correction and Hounsfield unit calibration. To determine the necessary parameters for Hounsfield unit calibration and software scatter correction parameters, the Catphan 600 (The Phantom Laboratory) phantom was used. Image quality parameters were evaluated using CIRS CBCT Image Quality and Electron Density Phantom (CIRS) in two different geometries: one modeling head and neck and other pelvic region. Phantoms were acquired with and without the grid and reconstructed with and without software correction which was adapted for the different acquisition scenarios. Parameters used in the phantom study weret{sub cup} for nonuniformity and contrast-to-noise ratio (CNR) for soft tissue visibility. Clinical scans were evaluated in an observer study in which four experienced radiotherapy technologists rated soft tissue visibility and uniformity of scans with and without the grid. Results: The proposed angle dependent gain correction algorithm suppressed the visible ring artifacts. Grid had a beneficial impact on nonuniformity, contrast to noise ratio, and Hounsfield unit accuracy for both scanning geometries. The nonuniformity reduced by 90% for head sized object and 91% for pelvic-sized object. CNR improved compared to no corrections on average by a factor 2.8 for the head sized object, and 2.2 for the pelvic sized phantom. Grid outperformed software correction alone, but adding additional software correction to the grid was overall the best strategy. In the observer study, a significant improvement was found in both soft tissue visibility and nonuniformity of scans when grid is used. Conclusions: The evaluated fiber-interspaced grid improved the image quality of the CBCT system for broad range of imaging conditions. Clinical scans show significant improvement in soft tissue visibility and uniformity without the need to increase the imaging dose.« less

Improved image quality of cone beam CT scans for radiotherapy image guidance using fiber-interspaced antiscatter grid.

PubMed

Stankovic, Uros; van Herk, Marcel; Ploeger, Lennert S; Sonke, Jan-Jakob

2014-06-01

Medical linear accelerator mounted cone beam CT (CBCT) scanner provides useful soft tissue contrast for purposes of image guidance in radiotherapy. The presence of extensive scattered radiation has a negative effect on soft tissue visibility and uniformity of CBCT scans. Antiscatter grids (ASG) are used in the field of diagnostic radiography to mitigate the scatter. They usually do increase the contrast of the scan, but simultaneously increase the noise. Therefore, and considering other scatter mitigation mechanisms present in a CBCT scanner, the applicability of ASGs with aluminum interspacing for a wide range of imaging conditions has been inconclusive in previous studies. In recent years, grids using fiber interspacers have appeared, providing grids with higher scatter rejection while maintaining reasonable transmission of primary radiation. The purpose of this study was to evaluate the impact of one such grid on CBCT image quality. The grid used (Philips Medical Systems) had ratio of 21:1, frequency 36 lp/cm, and nominal selectivity of 11.9. It was mounted on the kV flat panel detector of an Elekta Synergy linear accelerator and tested in a phantom and a clinical study. Due to the flex of the linac and presence of gridline artifacts an angle dependent gain correction algorithm was devised to mitigate resulting artifacts. Scan reconstruction was performed using XVI4.5 augmented with inhouse developed image lag correction and Hounsfield unit calibration. To determine the necessary parameters for Hounsfield unit calibration and software scatter correction parameters, the Catphan 600 (The Phantom Laboratory) phantom was used. Image quality parameters were evaluated using CIRS CBCT Image Quality and Electron Density Phantom (CIRS) in two different geometries: one modeling head and neck and other pelvic region. Phantoms were acquired with and without the grid and reconstructed with and without software correction which was adapted for the different acquisition scenarios. Parameters used in the phantom study were t(cup) for nonuniformity and contrast-to-noise ratio (CNR) for soft tissue visibility. Clinical scans were evaluated in an observer study in which four experienced radiotherapy technologists rated soft tissue visibility and uniformity of scans with and without the grid. The proposed angle dependent gain correction algorithm suppressed the visible ring artifacts. Grid had a beneficial impact on nonuniformity, contrast to noise ratio, and Hounsfield unit accuracy for both scanning geometries. The nonuniformity reduced by 90% for head sized object and 91% for pelvic-sized object. CNR improved compared to no corrections on average by a factor 2.8 for the head sized object, and 2.2 for the pelvic sized phantom. Grid outperformed software correction alone, but adding additional software correction to the grid was overall the best strategy. In the observer study, a significant improvement was found in both soft tissue visibility and nonuniformity of scans when grid is used. The evaluated fiber-interspaced grid improved the image quality of the CBCT system for broad range of imaging conditions. Clinical scans show significant improvement in soft tissue visibility and uniformity without the need to increase the imaging dose.

Computing Science and Statistics: Proceedings of the Symposium on Interface, 21-24 Apr 1991, Seattle, WA

DTIC Science & Technology

1991-01-01

Auvt’r discordaint lairs . p’ f~~~Ilit’ trtthailitY if ;i Ittili x’ ii IHit’ s,;tilct sIpac.’ is fujr s~,re ’’uristartt A1 𔃺 and 0t < 1, A ’tark...reconstruction algorithms, usually of the filtered back-projection type, do 99mTcIIMPAO Thallium-201 not correct for nonuniform photon attenuation and depth

Calibration of a spatial light modulator containing dual frequency liquid crystal

NASA Astrophysics Data System (ADS)

Gu, Dong-Feng; Winker, Bruce; Wen, Bing; Taber, Don; Brackley, Andrew; Wirth, Allan; Albanese, Marc; Landers, Frank

2005-08-01

Characterization and calibration process for a liquid crystal (LC) spatial light modulator (SLM) containing dual frequency liquid crystal is described. Special care was taken when dealing with LC cell gap non-uniformity and defect pixels. The calibration results were fed into a closed loop control algorithm to demonstrate correction of wavefront distortions. The performance characteristics of the device were reported. Substantial improvements were made in speed (bandwidth), resolution, power consumption and system weight/volume.

Stripe nonuniformity correction for infrared imaging system based on single image optimization

NASA Astrophysics Data System (ADS)

Hua, Weiping; Zhao, Jufeng; Cui, Guangmang; Gong, Xiaoli; Ge, Peng; Zhang, Jiang; Xu, Zhihai

2018-06-01

Infrared imaging is often disturbed by stripe nonuniformity noise. Scene-based correction method can effectively reduce the impact of stripe noise. In this paper, a stripe nonuniformity correction method based on differential constraint is proposed. Firstly, the gray distribution of stripe nonuniformity is analyzed and the penalty function is constructed by the difference of horizontal gradient and vertical gradient. With the weight function, the penalty function is optimized to obtain the corrected image. Comparing with other single-frame approaches, experiments show that the proposed method performs better in both subjective and objective analysis, and does less damage to edge and detail. Meanwhile, the proposed method runs faster. We have also discussed the differences between the proposed idea and multi-frame methods. Our method is finally well applied in hardware system.

Algorithms to eliminate the influence of non-uniform intensity distributions on wavefront reconstruction by quadri-wave lateral shearing interferometers

NASA Astrophysics Data System (ADS)

Chen, Xiao-jun; Dong, Li-zhi; Wang, Shuai; Yang, Ping; Xu, Bing

2017-11-01

In quadri-wave lateral shearing interferometry (QWLSI), when the intensity distribution of the incident light wave is non-uniform, part of the information of the intensity distribution will couple with the wavefront derivatives to cause wavefront reconstruction errors. In this paper, we propose two algorithms to reduce the influence of a non-uniform intensity distribution on wavefront reconstruction. Our simulation results demonstrate that the reconstructed amplitude distribution (RAD) algorithm can effectively reduce the influence of the intensity distribution on the wavefront reconstruction and that the collected amplitude distribution (CAD) algorithm can almost eliminate it.

Adaptive gamma correction-based expert system for nonuniform illumination face enhancement

NASA Astrophysics Data System (ADS)

Abdelhamid, Iratni; Mustapha, Aouache; Adel, Oulefki

2018-03-01

The image quality of a face recognition system suffers under severe lighting conditions. Thus, this study aims to develop an approach for nonuniform illumination adjustment based on an adaptive gamma correction (AdaptGC) filter that can solve the aforementioned issue. An approach for adaptive gain factor prediction was developed via neural network model-based cross-validation (NN-CV). To achieve this objective, a gamma correction function and its effects on the face image quality with different gain values were examined first. Second, an orientation histogram (OH) algorithm was assessed as a face's feature descriptor. Subsequently, a density histogram module was developed for face label generation. During the NN-CV construction, the model was assessed to recognize the OH descriptor and predict the face label. The performance of the NN-CV model was evaluated by examining the statistical measures of root mean square error and coefficient of efficiency. Third, to evaluate the AdaptGC enhancement approach, an image quality metric was adopted using enhancement by entropy, contrast per pixel, second-derivative-like measure of enhancement, and sharpness, then supported by visual inspection. The experiment results were examined using five face's databases, namely, extended Yale-B, Carnegie Mellon University-Pose, Illumination, and Expression, Mobio, FERET, and Oulu-CASIA-NIR-VIS. The final results prove that AdaptGC filter implementation compared with state-of-the-art methods is the best choice in terms of contrast and nonuniform illumination adjustment. In summary, the benefits attained prove that AdaptGC is driven by a profitable enhancement rate, which provides satisfying features for high rate face recognition systems.

ECHO: A reference-free short-read error correction algorithm

PubMed Central

Kao, Wei-Chun; Chan, Andrew H.; Song, Yun S.

2011-01-01

Developing accurate, scalable algorithms to improve data quality is an important computational challenge associated with recent advances in high-throughput sequencing technology. In this study, a novel error-correction algorithm, called ECHO, is introduced for correcting base-call errors in short-reads, without the need of a reference genome. Unlike most previous methods, ECHO does not require the user to specify parameters of which optimal values are typically unknown a priori. ECHO automatically sets the parameters in the assumed model and estimates error characteristics specific to each sequencing run, while maintaining a running time that is within the range of practical use. ECHO is based on a probabilistic model and is able to assign a quality score to each corrected base. Furthermore, it explicitly models heterozygosity in diploid genomes and provides a reference-free method for detecting bases that originated from heterozygous sites. On both real and simulated data, ECHO is able to improve the accuracy of previous error-correction methods by several folds to an order of magnitude, depending on the sequence coverage depth and the position in the read. The improvement is most pronounced toward the end of the read, where previous methods become noticeably less effective. Using a whole-genome yeast data set, it is demonstrated here that ECHO is capable of coping with nonuniform coverage. Also, it is shown that using ECHO to perform error correction as a preprocessing step considerably facilitates de novo assembly, particularly in the case of low-to-moderate sequence coverage depth. PMID:21482625

Scene-based nonuniformity corrections for optical and SWIR pushbroom sensors.

PubMed

Leathers, Robert; Downes, Trijntje; Priest, Richard

2005-06-27

We propose and evaluate several scene-based methods for computing nonuniformity corrections for visible or near-infrared pushbroom sensors. These methods can be used to compute new nonuniformity correction values or to repair or refine existing radiometric calibrations. For a given data set, the preferred method depends on the quality of the data, the type of scenes being imaged, and the existence and quality of a laboratory calibration. We demonstrate our methods with data from several different sensor systems and provide a generalized approach to be taken for any new data set.

An efficient shutter-less non-uniformity correction method for infrared focal plane arrays

NASA Astrophysics Data System (ADS)

Huang, Xiyan; Sui, Xiubao; Zhao, Yao

2017-02-01

The non-uniformity response in infrared focal plane array (IRFPA) detectors has a bad effect on images with fixed pattern noise. At present, it is common to use shutter to prevent from radiation of target and to update the parameters of non-uniformity correction in the infrared imaging system. The use of shutter causes "freezing" image. And inevitably, there exists the problems of the instability and reliability of system, power consumption, and concealment of infrared detection. In this paper, we present an efficient shutter-less non-uniformity correction (NUC) method for infrared focal plane arrays. The infrared imaging system can use the data gaining in thermostat to calculate the incident infrared radiation by shell real-timely. And the primary output of detector except the shell radiation can be corrected by the gain coefficient. This method has been tested in real infrared imaging system, reaching high correction level, reducing fixed pattern noise, adapting wide temperature range.

Noise-cancellation-based nonuniformity correction algorithm for infrared focal-plane arrays.

PubMed

Godoy, Sebastián E; Pezoa, Jorge E; Torres, Sergio N

2008-10-10

The spatial fixed-pattern noise (FPN) inherently generated in infrared (IR) imaging systems compromises severely the quality of the acquired imagery, even making such images inappropriate for some applications. The FPN refers to the inability of the photodetectors in the focal-plane array to render a uniform output image when a uniform-intensity scene is being imaged. We present a noise-cancellation-based algorithm that compensates for the additive component of the FPN. The proposed method relies on the assumption that a source of noise correlated to the additive FPN is available to the IR camera. An important feature of the algorithm is that all the calculations are reduced to a simple equation, which allows for the bias compensation of the raw imagery. The algorithm performance is tested using real IR image sequences and is compared to some classical methodologies. (c) 2008 Optical Society of America

An improved algorithm for de-striping of ocean colour monitor imageries aided by measured sensor characteristics

NASA Astrophysics Data System (ADS)

Dutt, Ashutosh; Mishra, Ashish; Goswami, D. R.; Kumar, A. S. Kiran

2016-05-01

The push-broom sensors in bands meant to study oceans, in general suffer from residual non uniformity even after radiometric correction. The in-orbit data from OCM-2 shows pronounced striping in lower bands. There have been many attempts and different approaches to solve the problem using image data itself. The success or lack of it of each algorithm lies on the quality of the uniform region identified. In this paper, an image based destriping algorithm is presented with constraints being derived from Ground Calibration exercise. The basis of the methodology is determination of pixel to pixel non-uniformity through uniform segments identified and collected from large number of images, covering the dynamic range of the sensor. The results show the effectiveness of the algorithm over different targets. The performance is qualitatively evaluated by visual inspection and quantitatively measured by two parameters.

Solid state temperature-dependent NUC (non-uniformity correction) in uncooled LWIR (long-wave infrared) imaging system

NASA Astrophysics Data System (ADS)

Cao, Yanpeng; Tisse, Christel-Loic

2013-06-01

In uncooled LWIR microbolometer imaging systems, temperature fluctuations of FPA (Focal Plane Array) as well as lens and mechanical components placed along the optical path result in thermal drift and spatial non-uniformity. These non-idealities generate undesirable FPN (Fixed-Pattern-Noise) that is difficult to remove using traditional, individual shutterless and TEC-less (Thermo-Electric Cooling) techniques. In this paper we introduce a novel single-image based processing approach that marries the benefits of both statistical scene-based and calibration-based NUC algorithms, without relying neither on extra temperature reference nor accurate motion estimation, to compensate the resulting temperature-dependent non-uniformities. Our method includes two subsequent image processing steps. Firstly, an empirical behavioral model is derived by calibrations to characterize the spatio-temporal response of the microbolometric FPA to environmental and scene temperature fluctuations. Secondly, we experimentally establish that the FPN component caused by the optics creates a spatio-temporally continuous, low frequency, low-magnitude variation of the image intensity. We propose to make use of this property and learn a prior on the spatial distribution of natural image gradients to infer the correction function for the entire image. The performance and robustness of the proposed temperature-adaptive NUC method are demonstrated by showing results obtained from a 640×512 pixels uncooled LWIR microbolometer imaging system operating over a broad range of temperature and with rapid environmental temperature changes (i.e. from -5°C to 65°C within 10 minutes).

Group normalization for genomic data.

PubMed

Ghandi, Mahmoud; Beer, Michael A

2012-01-01

Data normalization is a crucial preliminary step in analyzing genomic datasets. The goal of normalization is to remove global variation to make readings across different experiments comparable. In addition, most genomic loci have non-uniform sensitivity to any given assay because of variation in local sequence properties. In microarray experiments, this non-uniform sensitivity is due to different DNA hybridization and cross-hybridization efficiencies, known as the probe effect. In this paper we introduce a new scheme, called Group Normalization (GN), to remove both global and local biases in one integrated step, whereby we determine the normalized probe signal by finding a set of reference probes with similar responses. Compared to conventional normalization methods such as Quantile normalization and physically motivated probe effect models, our proposed method is general in the sense that it does not require the assumption that the underlying signal distribution be identical for the treatment and control, and is flexible enough to correct for nonlinear and higher order probe effects. The Group Normalization algorithm is computationally efficient and easy to implement. We also describe a variant of the Group Normalization algorithm, called Cross Normalization, which efficiently amplifies biologically relevant differences between any two genomic datasets.

Group Normalization for Genomic Data

PubMed Central

Ghandi, Mahmoud; Beer, Michael A.

2012-01-01

Data normalization is a crucial preliminary step in analyzing genomic datasets. The goal of normalization is to remove global variation to make readings across different experiments comparable. In addition, most genomic loci have non-uniform sensitivity to any given assay because of variation in local sequence properties. In microarray experiments, this non-uniform sensitivity is due to different DNA hybridization and cross-hybridization efficiencies, known as the probe effect. In this paper we introduce a new scheme, called Group Normalization (GN), to remove both global and local biases in one integrated step, whereby we determine the normalized probe signal by finding a set of reference probes with similar responses. Compared to conventional normalization methods such as Quantile normalization and physically motivated probe effect models, our proposed method is general in the sense that it does not require the assumption that the underlying signal distribution be identical for the treatment and control, and is flexible enough to correct for nonlinear and higher order probe effects. The Group Normalization algorithm is computationally efficient and easy to implement. We also describe a variant of the Group Normalization algorithm, called Cross Normalization, which efficiently amplifies biologically relevant differences between any two genomic datasets. PMID:22912661

The photon fluence non-uniformity correction for air kerma near Cs-137 brachytherapy sources.

PubMed

Rodríguez, M L; deAlmeida, C E

2004-05-07

The use of brachytherapy sources in radiation oncology requires their proper calibration to guarantee the correctness of the dose delivered to the treatment volume of a patient. One of the elements to take into account in the dose calculation formalism is the non-uniformity of the photon fluence due to the beam divergence that causes a steep dose gradient near the source. The correction factors for this phenomenon have been usually evaluated by the two theories available, both of which were conceived only for point sources. This work presents the Monte Carlo assessment of the non-uniformity correction factors for a Cs-137 linear source and a Farmer-type ionization chamber. The results have clearly demonstrated that for linear sources there are some important differences among the values obtained from different calculation models, especially at short distances from the source. The use of experimental values for each specific source geometry is recommended in order to assess the non-uniformity factors for linear sources in clinical situations that require special dose calculations or when the correctness of treatment planning software is verified during the acceptance tests.

A splitting algorithm for the wavelet transform of cubic splines on a nonuniform grid

NASA Astrophysics Data System (ADS)

Sulaimanov, Z. M.; Shumilov, B. M.

2017-10-01

For cubic splines with nonuniform nodes, splitting with respect to the even and odd nodes is used to obtain a wavelet expansion algorithm in the form of the solution to a three-diagonal system of linear algebraic equations for the coefficients. Computations by hand are used to investigate the application of this algorithm for numerical differentiation. The results are illustrated by solving a prediction problem.

SU-F-J-211: Scatter Correction for Clinical Cone-Beam CT System Using An Optimized Stationary Beam Blocker with a Single Scan

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liang, X; Zhang, Z; Xie, Y

Purpose: X-ray scatter photons result in significant image quality degradation of cone-beam CT (CBCT). Measurement based algorithms using beam blocker directly acquire the scatter samples and achieve significant improvement on the quality of CBCT image. Within existing algorithms, single-scan and stationary beam blocker proposed previously is promising due to its simplicity and practicability. Although demonstrated effectively on tabletop system, the blocker fails to estimate the scatter distribution on clinical CBCT system mainly due to the gantry wobble. In addition, the uniform distributed blocker strips in our previous design results in primary data loss in the CBCT system and leads tomore » the image artifacts due to data insufficiency. Methods: We investigate the motion behavior of the beam blocker in each projection and design an optimized non-uniform blocker strip distribution which accounts for the data insufficiency issue. An accurate scatter estimation is then achieved from the wobble modeling. Blocker wobble curve is estimated using threshold-based segmentation algorithms in each projection. In the blocker design optimization, the quality of final image is quantified using the number of the primary data loss voxels and the mesh adaptive direct search algorithm is applied to minimize the objective function. Scatter-corrected CT images are obtained using the optimized blocker. Results: The proposed method is evaluated using Catphan@504 phantom and a head patient. On the Catphan©504, our approach reduces the average CT number error from 115 Hounsfield unit (HU) to 11 HU in the selected regions of interest, and improves the image contrast by a factor of 1.45 in the high-contrast regions. On the head patient, the CT number error is reduced from 97 HU to 6 HU in the soft tissue region and image spatial non-uniformity is decreased from 27% to 5% after correction. Conclusion: The proposed optimized blocker design is practical and attractive for CBCT guided radiation therapy. This work is supported by grants from Guangdong Innovative Research Team Program of China (Grant No. 2011S013), National 863 Programs of China (Grant Nos. 2012AA02A604 and 2015AA043203), the National High-tech R&D Program for Young Scientists by the Ministry of Science and Technology of China (Grant No. 2015AA020917)« less

Atlas-based fuzzy connectedness segmentation and intensity nonuniformity correction applied to brain MRI.

PubMed

Zhou, Yongxin; Bai, Jing

2007-01-01

A framework that combines atlas registration, fuzzy connectedness (FC) segmentation, and parametric bias field correction (PABIC) is proposed for the automatic segmentation of brain magnetic resonance imaging (MRI). First, the atlas is registered onto the MRI to initialize the following FC segmentation. Original techniques are proposed to estimate necessary initial parameters of FC segmentation. Further, the result of the FC segmentation is utilized to initialize a following PABIC algorithm. Finally, we re-apply the FC technique on the PABIC corrected MRI to get the final segmentation. Thus, we avoid expert human intervention and provide a fully automatic method for brain MRI segmentation. Experiments on both simulated and real MRI images demonstrate the validity of the method, as well as the limitation of the method. Being a fully automatic method, it is expected to find wide applications, such as three-dimensional visualization, radiation therapy planning, and medical database construction.

High-efficiency non-uniformity correction for wide dynamic linear infrared radiometry system

NASA Astrophysics Data System (ADS)

Li, Zhou; Yu, Yi; Tian, Qi-Jie; Chang, Song-Tao; He, Feng-Yun; Yin, Yan-He; Qiao, Yan-Feng

2017-09-01

Several different integration times are always set for a wide dynamic linear and continuous variable integration time infrared radiometry system, therefore, traditional calibration-based non-uniformity correction (NUC) are usually conducted one by one, and furthermore, several calibration sources required, consequently makes calibration and process of NUC time-consuming. In this paper, the difference of NUC coefficients between different integration times have been discussed, and then a novel NUC method called high-efficiency NUC, which combines the traditional calibration-based non-uniformity correction, has been proposed. It obtains the correction coefficients of all integration times in whole linear dynamic rangesonly by recording three different images of a standard blackbody. Firstly, mathematical procedure of the proposed non-uniformity correction method is validated and then its performance is demonstrated by a 400 mm diameter ground-based infrared radiometry system. Experimental results show that the mean value of Normalized Root Mean Square (NRMS) is reduced from 3.78% to 0.24% by the proposed method. In addition, the results at 4 ms and 70 °C prove that this method has a higher accuracy compared with traditional calibration-based NUC. In the meantime, at other integration time and temperature there is still a good correction effect. Moreover, it greatly reduces the number of correction time and temperature sampling point, and is characterized by good real-time performance and suitable for field measurement.

Intensity non-uniformity correction using N3 on 3-T scanners with multichannel phased array coils

PubMed Central

Boyes, Richard G.; Gunter, Jeff L.; Frost, Chris; Janke, Andrew L.; Yeatman, Thomas; Hill, Derek L.G.; Bernstein, Matt A.; Thompson, Paul M.; Weiner, Michael W.; Schuff, Norbert; Alexander, Gene E.; Killiany, Ronald J.; DeCarli, Charles; Jack, Clifford R.; Fox, Nick C.

2008-01-01

Measures of structural brain change based on longitudinal MR imaging are increasingly important but can be degraded by intensity non-uniformity. This non-uniformity can be more pronounced at higher field strengths, or when using multichannel receiver coils. We assessed the ability of the non-parametric non-uniform intensity normalization (N3) technique to correct non-uniformity in 72 volumetric brain MR scans from the preparatory phase of the Alzheimer’s Disease Neuroimaging Initiative (ADNI). Normal elderly subjects (n = 18) were scanned on different 3-T scanners with a multichannel phased array receiver coil at baseline, using magnetization prepared rapid gradient echo (MP-RAGE) and spoiled gradient echo (SPGR) pulse sequences, and again 2 weeks later. When applying N3, we used five brain masks of varying accuracy and four spline smoothing distances (d = 50, 100, 150 and 200 mm) to ascertain which combination of parameters optimally reduces the non-uniformity. We used the normalized white matter intensity variance (standard deviation/mean) to ascertain quantitatively the correction for a single scan; we used the variance of the normalized difference image to assess quantitatively the consistency of the correction over time from registered scan pairs. Our results showed statistically significant (p < 0.01) improvement in uniformity for individual scans and reduction in the normalized difference image variance when using masks that identified distinct brain tissue classes, and when using smaller spline smoothing distances (e.g., 50-100 mm) for both MP-RAGE and SPGR pulse sequences. These optimized settings may assist future large-scale studies where 3-T scanners and phased array receiver coils are used, such as ADNI, so that intensity non-uniformity does not influence the power of MR imaging to detect disease progression and the factors that influence it. PMID:18063391

Determination of the microbolometric FPA's responsivity with imaging system's radiometric considerations

NASA Astrophysics Data System (ADS)

Gogler, Slawomir; Bieszczad, Grzegorz; Krupinski, Michal

2013-10-01

Thermal imagers and used therein infrared array sensors are subject to calibration procedure and evaluation of their voltage sensitivity on incident radiation during manufacturing process. The calibration procedure is especially important in so-called radiometric cameras, where accurate radiometric quantities, given in physical units, are of concern. Even though non-radiometric cameras are not expected to stand up to such elevated standards, it is still important, that the image faithfully represents temperature variations across the scene. Detectors used in thermal camera are illuminated by infrared radiation transmitted through an infrared transmitting optical system. Often an optical system, when exposed to uniform Lambertian source forms a non-uniform irradiation distribution in its image plane. In order to be able to carry out an accurate non-uniformity correction it is essential to correctly predict irradiation distribution from a uniform source. In the article a non-uniformity correction method has been presented, that takes into account optical system's radiometry. Predictions of the irradiation distribution have been confronted with measured irradiance values. Presented radiometric model allows fast and accurate non-uniformity correction to be carried out.

Computation of transmitted and received B1 fields in magnetic resonance imaging.

PubMed

Milles, Julien; Zhu, Yue Min; Chen, Nan-Kuei; Panych, Lawrence P; Gimenez, Gérard; Guttmann, Charles R G

2006-05-01

Computation of B1 fields is a key issue for determination and correction of intensity nonuniformity in magnetic resonance images. This paper presents a new method for computing transmitted and received B1 fields. Our method combines a modified MRI acquisition protocol and an estimation technique based on the Levenberg-Marquardt algorithm and spatial filtering. It enables accurate estimation of transmitted and received B1 fields for both homogeneous and heterogeneous objects. The method is validated using numerical simulations and experimental data from phantom and human scans. The experimental results are in agreement with theoretical expectations.

A new bias field correction method combining N3 and FCM for improved segmentation of breast density on MRI.

PubMed

Lin, Muqing; Chan, Siwa; Chen, Jeon-Hor; Chang, Daniel; Nie, Ke; Chen, Shih-Ting; Lin, Cheng-Ju; Shih, Tzu-Ching; Nalcioglu, Orhan; Su, Min-Ying

2011-01-01

Quantitative breast density is known as a strong risk factor associated with the development of breast cancer. Measurement of breast density based on three-dimensional breast MRI may provide very useful information. One important step for quantitative analysis of breast density on MRI is the correction of field inhomogeneity to allow an accurate segmentation of the fibroglandular tissue (dense tissue). A new bias field correction method by combining the nonparametric nonuniformity normalization (N3) algorithm and fuzzy-C-means (FCM)-based inhomogeneity correction algorithm is developed in this work. The analysis is performed on non-fat-sat T1-weighted images acquired using a 1.5 T MRI scanner. A total of 60 breasts from 30 healthy volunteers was analyzed. N3 is known as a robust correction method, but it cannot correct a strong bias field on a large area. FCM-based algorithm can correct the bias field on a large area, but it may change the tissue contrast and affect the segmentation quality. The proposed algorithm applies N3 first, followed by FCM, and then the generated bias field is smoothed using Gaussian kernal and B-spline surface fitting to minimize the problem of mistakenly changed tissue contrast. The segmentation results based on the N3+FCM corrected images were compared to the N3 and FCM alone corrected images and another method, coherent local intensity clustering (CLIC), corrected images. The segmentation quality based on different correction methods were evaluated by a radiologist and ranked. The authors demonstrated that the iterative N3+FCM correction method brightens the signal intensity of fatty tissues and that separates the histogram peaks between the fibroglandular and fatty tissues to allow an accurate segmentation between them. In the first reading session, the radiologist found (N3+FCM > N3 > FCM) ranking in 17 breasts, (N3+FCM > N3 = FCM) ranking in 7 breasts, (N3+FCM = N3 > FCM) in 32 breasts, (N3+FCM = N3 = FCM) in 2 breasts, and (N3 > N3+FCM > FCM) in 2 breasts. The results of the second reading session were similar. The performance in each pairwise Wilcoxon signed-rank test is significant, showing N3+FCM superior to both N3 and FCM, and N3 superior to FCM. The performance of the new N3+FCM algorithm was comparable to that of CLIC, showing equivalent quality in 57/60 breasts. Choosing an appropriate bias field correction method is a very important preprocessing step to allow an accurate segmentation of fibroglandular tissues based on breast MRI for quantitative measurement of breast density. The proposed algorithm combining N3+FCM and CLIC both yield satisfactory results.

The effects of center of rotation errors on cardiac SPECT imaging

NASA Astrophysics Data System (ADS)

Bai, Chuanyong; Shao, Ling; Ye, Jinghan; Durbin, M.

2003-10-01

In SPECT imaging, center of rotation (COR) errors lead to the misalignment of projection data and can potentially degrade the quality of the reconstructed images. In this work, we study the effects of COR errors on cardiac SPECT imaging using simulation, point source, cardiac phantom, and patient studies. For simulation studies, we generate projection data using a uniform MCAT phantom first without modeling any physical effects (NPH), then with the modeling of detector response effect (DR) alone. We then corrupt the projection data with simulated sinusoid and step COR errors. For other studies, we introduce sinusoid COR errors to projection data acquired on SPECT systems. An OSEM algorithm is used for image reconstruction without detector response correction, but with nonuniform attenuation correction when needed. The simulation studies show that, when COR errors increase from 0 to 0.96 cm: 1) sinusoid COR errors in axial direction lead to intensity decrease in the inferoapical region; 2) step COR errors in axial direction lead to intensity decrease in the distal anterior region. The intensity decrease is more severe in images reconstructed from projection data with NPH than with DR; and 3) the effects of COR errors in transaxial direction seem to be insignificant. In other studies, COR errors slightly degrade point source resolution; COR errors of 0.64 cm or above introduce visible but insignificant nonuniformity in the images of uniform cardiac phantom; COR errors up to 0.96 cm in transaxial direction affect the lesion-to-background contrast (LBC) insignificantly in the images of cardiac phantom with defects, and COR errors up to 0.64 cm in axial direction only slightly decrease the LBC. For the patient studies with COR errors up to 0.96 cm, images have the same diagnostic/prognostic values as those without COR errors. This work suggests that COR errors of up to 0.64 cm are not likely to change the clinical applications of cardiac SPECT imaging when using iterative reconstruction algorithm without detector response correction.

Generalized expectation-maximization segmentation of brain MR images

NASA Astrophysics Data System (ADS)

Devalkeneer, Arnaud A.; Robe, Pierre A.; Verly, Jacques G.; Phillips, Christophe L. M.

2006-03-01

Manual segmentation of medical images is unpractical because it is time consuming, not reproducible, and prone to human error. It is also very difficult to take into account the 3D nature of the images. Thus, semi- or fully-automatic methods are of great interest. Current segmentation algorithms based on an Expectation- Maximization (EM) procedure present some limitations. The algorithm by Ashburner et al., 2005, does not allow multichannel inputs, e.g. two MR images of different contrast, and does not use spatial constraints between adjacent voxels, e.g. Markov random field (MRF) constraints. The solution of Van Leemput et al., 1999, employs a simplified model (mixture coefficients are not estimated and only one Gaussian is used by tissue class, with three for the image background). We have thus implemented an algorithm that combines the features of these two approaches: multichannel inputs, intensity bias correction, multi-Gaussian histogram model, and Markov random field (MRF) constraints. Our proposed method classifies tissues in three iterative main stages by way of a Generalized-EM (GEM) algorithm: (1) estimation of the Gaussian parameters modeling the histogram of the images, (2) correction of image intensity non-uniformity, and (3) modification of prior classification knowledge by MRF techniques. The goal of the GEM algorithm is to maximize the log-likelihood across the classes and voxels. Our segmentation algorithm was validated on synthetic data (with the Dice metric criterion) and real data (by a neurosurgeon) and compared to the original algorithms by Ashburner et al. and Van Leemput et al. Our combined approach leads to more robust and accurate segmentation.

Determination of the Maximum Temperature in a Non-Uniform Hot Zone by Line-of-Site Absorption Spectroscopy with a Single Diode Laser.

PubMed

Liger, Vladimir V; Mironenko, Vladimir R; Kuritsyn, Yurii A; Bolshov, Mikhail A

2018-05-17

A new algorithm for the estimation of the maximum temperature in a non-uniform hot zone by a sensor based on absorption spectrometry with a diode laser is developed. The algorithm is based on the fitting of the absorption spectrum with a test molecule in a non-uniform zone by linear combination of two single temperature spectra simulated using spectroscopic databases. The proposed algorithm allows one to better estimate the maximum temperature of a non-uniform zone and can be useful if only the maximum temperature rather than a precise temperature profile is of primary interest. The efficiency and specificity of the algorithm are demonstrated in numerical experiments and experimentally proven using an optical cell with two sections. Temperatures and water vapor concentrations could be independently regulated in both sections. The best fitting was found using a correlation technique. A distributed feedback (DFB) diode laser in the spectral range around 1.343 µm was used in the experiments. Because of the significant differences between the temperature dependences of the experimental and theoretical absorption spectra in the temperature range 300⁻1200 K, a database was constructed using experimentally detected single temperature spectra. Using the developed algorithm the maximum temperature in the two-section cell was estimated with accuracy better than 30 K.

Improving the photometric precision of IRAC Channel 1

NASA Astrophysics Data System (ADS)

Mighell, Kenneth J.; Glaccum, William; Hoffmann, William

2008-07-01

Planning is underway for a possible post-cryogenic mission with the Spitzer Space Telescope. Only Channels 1 and 2 (3.6 and 4.5 μm) of the Infrared Array Camera (IRAC) will be operational; they will have unmatched sensitivity from 3 to 5 microns until the James Webb Space Telescope is launched. At SPIE Orlando, Mighell described his NASA-funded MATPHOT algorithm for precision stellar photometry and astrometry and presented MATPHOT-based simulations that suggested Channel 1 stellar photometry may be significantly improved by modeling the nonuniform RQE within each pixel, which, when not taken into account in aperture photometry, causes the derived flux to vary according to where the centroid falls within a single pixel (the pixel-phase effect). We analyze archival observations of calibration stars and compare the precision of stellar aperture photometry, with the recommended 1-dimensional and a new 2-dimensional pixel-phase aperture-flux correction, and MATPHOT-based PSF-fitting photometry which accounts for the observed loss of stellar flux due to the nonuniform intrapixel quantum efficiency. We show how the precision of aperture photometry of bright isolated stars corrected with the new 2-dimensional aperture-flux correction function can yield photometry that is almost as precise as that produced by PSF-fitting procedures. This timely research effort is intended to enhance the science return not only of observations already in Spitzer data archive but also those that would be made during the Spitzer Warm Mission.

MRI non-uniformity correction through interleaved bias estimation and B-spline deformation with a template.

PubMed

Fletcher, E; Carmichael, O; Decarli, C

2012-01-01

We propose a template-based method for correcting field inhomogeneity biases in magnetic resonance images (MRI) of the human brain. At each algorithm iteration, the update of a B-spline deformation between an unbiased template image and the subject image is interleaved with estimation of a bias field based on the current template-to-image alignment. The bias field is modeled using a spatially smooth thin-plate spline interpolation based on ratios of local image patch intensity means between the deformed template and subject images. This is used to iteratively correct subject image intensities which are then used to improve the template-to-image deformation. Experiments on synthetic and real data sets of images with and without Alzheimer's disease suggest that the approach may have advantages over the popular N3 technique for modeling bias fields and narrowing intensity ranges of gray matter, white matter, and cerebrospinal fluid. This bias field correction method has the potential to be more accurate than correction schemes based solely on intrinsic image properties or hypothetical image intensity distributions.

MRI Non-Uniformity Correction Through Interleaved Bias Estimation and B-Spline Deformation with a Template*

PubMed Central

Fletcher, E.; Carmichael, O.; DeCarli, C.

2013-01-01

We propose a template-based method for correcting field inhomogeneity biases in magnetic resonance images (MRI) of the human brain. At each algorithm iteration, the update of a B-spline deformation between an unbiased template image and the subject image is interleaved with estimation of a bias field based on the current template-to-image alignment. The bias field is modeled using a spatially smooth thin-plate spline interpolation based on ratios of local image patch intensity means between the deformed template and subject images. This is used to iteratively correct subject image intensities which are then used to improve the template-to-image deformation. Experiments on synthetic and real data sets of images with and without Alzheimer’s disease suggest that the approach may have advantages over the popular N3 technique for modeling bias fields and narrowing intensity ranges of gray matter, white matter, and cerebrospinal fluid. This bias field correction method has the potential to be more accurate than correction schemes based solely on intrinsic image properties or hypothetical image intensity distributions. PMID:23365843

A Parameterized Pattern-Error Objective for Large-Scale Phase-Only Array Pattern Design

DTIC Science & Technology

2016-03-21

12 4.4 Example 3: Sector Beam w/ Nonuniform Amplitude...fixed uniform amplitude illumination, phase-only optimization can also find application to arrays with fixed but nonuniform tapers. Such fixed tapers...arbitrary element locations nonuniform FFT algorithms exist [43–45] that have the same asymptotic complexity as the conventional FFT, although the

NURD: an implementation of a new method to estimate isoform expression from non-uniform RNA-seq data

PubMed Central

2013-01-01

Background RNA-Seq technology has been used widely in transcriptome study, and one of the most important applications is to estimate the expression level of genes and their alternative splicing isoforms. There have been several algorithms published to estimate the expression based on different models. Recently Wu et al. published a method that can accurately estimate isoform level expression by considering position-related sequencing biases using nonparametric models. The method has advantages in handling different read distributions, but there hasn’t been an efficient program to implement this algorithm. Results We developed an efficient implementation of the algorithm in the program NURD. It uses a binary interval search algorithm. The program can correct both the global tendency of sequencing bias in the data and local sequencing bias specific to each gene. The correction makes the isoform expression estimation more reliable under various read distributions. And the implementation is computationally efficient in both the memory cost and running time and can be readily scaled up for huge datasets. Conclusion NURD is an efficient and reliable tool for estimating the isoform expression level. Given the reads mapping result and gene annotation file, NURD will output the expression estimation result. The package is freely available for academic use at http://bioinfo.au.tsinghua.edu.cn/software/NURD/. PMID:23837734

A Comprehensive Theory of Algorithms for Wireless Networks and Mobile Systems

DTIC Science & Technology

2016-06-08

David Peleg. Nonuniform SINR+Voronoi Diagrams are Effectively Uniform. In Yoram Moses, editor, Distributed Computing: 29th International Symposium...in Computer Science, page 559. Springer, 2014. [16] Erez Kantor, Zvi Lotker, Merav Parter, and David Peleg. Nonuniform sINR+Voronoi dia- grams are...Merav Parter, and David Peleg. Nonuniform SINR+Voronoi diagrams are effectively uniform. In Yoram Moses, editor, Distributed Computing - 29th

Testing block subdivision algorithms on block designs

NASA Astrophysics Data System (ADS)

Wiseman, Natalie; Patterson, Zachary

2016-01-01

Integrated land use-transportation models predict future transportation demand taking into account how households and firms arrange themselves partly as a function of the transportation system. Recent integrated models require parcels as inputs and produce household and employment predictions at the parcel scale. Block subdivision algorithms automatically generate parcel patterns within blocks. Evaluating block subdivision algorithms is done by way of generating parcels and comparing them to those in a parcel database. Three block subdivision algorithms are evaluated on how closely they reproduce parcels of different block types found in a parcel database from Montreal, Canada. While the authors who developed each of the algorithms have evaluated them, they have used their own metrics and block types to evaluate their own algorithms. This makes it difficult to compare their strengths and weaknesses. The contribution of this paper is in resolving this difficulty with the aim of finding a better algorithm suited to subdividing each block type. The proposed hypothesis is that given the different approaches that block subdivision algorithms take, it's likely that different algorithms are better adapted to subdividing different block types. To test this, a standardized block type classification is used that consists of mutually exclusive and comprehensive categories. A statistical method is used for finding a better algorithm and the probability it will perform well for a given block type. Results suggest the oriented bounding box algorithm performs better for warped non-uniform sites, as well as gridiron and fragmented uniform sites. It also produces more similar parcel areas and widths. The Generalized Parcel Divider 1 algorithm performs better for gridiron non-uniform sites. The Straight Skeleton algorithm performs better for loop and lollipop networks as well as fragmented non-uniform and warped uniform sites. It also produces more similar parcel shapes and patterns.

Optimized Routing of Intelligent, Mobile Sensors for Dynamic, Data-Driven Sampling

DTIC Science & Technology

2016-09-27

nonstationary random process that requires nonuniform sampling. The ap- proach incorporates complementary representations of an unknown process: the first...lookup table as follows. A uniform grid is created in the r-domain and mapped to the R-domain, which produces a nonuniform grid of locations in the R...vehicle coverage algorithm that invokes the coor- dinate transformation from the previous section to generate nonuniform sampling trajectories [54]. We

Effect of attenuation correction on image quality in emission tomography

NASA Astrophysics Data System (ADS)

Denisova, N. V.; Ondar, M. M.

2017-10-01

In this paper, mathematical modeling and computer simulations of myocardial perfusion SPECT imaging are performed. The main factors affecting the quality of reconstructed images in SPECT are anatomical structures, the diastolic volume of a myocardium and attenuation of gamma rays. The purpose of the present work is to study the effect of attenuation correction on image quality in emission tomography. The basic 2D model describing a Tc-99m distribution in a transaxial slice of the thoracic part of a patient body was designed. This model was used to construct four phantoms simulated various anatomical shapes: 2 male and 2 female patients with normal, obese and subtle physique were included in the study. Data acquisition model which includes the effect of non-uniform attenuation, collimator-detector response and Poisson statistics was developed. The projection data were calculated for 60 views in accordance with the standard myocardial perfusion SPECT imaging protocol. Reconstructions of images were performed using the OSEM algorithm which is widely used in modern SPECT systems. Two types of patient's examination procedures were simulated: SPECT without attenuation correction and SPECT/CT with attenuation correction. The obtained results indicate a significant effect of the attenuation correction on the SPECT images quality.

[A practical procedure to improve the accuracy of radiochromic film dosimetry: a integration with a correction method of uniformity correction and a red/blue correction method].

PubMed

Uehara, Ryuzo; Tachibana, Hidenobu; Ito, Yasushi; Yoshino, Shinichi; Matsubayashi, Fumiyasu; Sato, Tomoharu

2013-06-01

It has been reported that the light scattering could worsen the accuracy of dose distribution measurement using a radiochromic film. The purpose of this study was to investigate the accuracy of two different films, EDR2 and EBT2, as film dosimetry tools. The effectiveness of a correction method for the non-uniformity caused from EBT2 film and the light scattering was also evaluated. In addition the efficacy of this correction method integrated with the red/blue correction method was assessed. EDR2 and EBT2 films were read using a flatbed charge-coupled device scanner (EPSON 10000G). Dose differences on the axis perpendicular to the scanner lamp movement axis were within 1% with EDR2, but exceeded 3% (Maximum: +8%) with EBT2. The non-uniformity correction method, after a single film exposure, was applied to the readout of the films. A corrected dose distribution data was subsequently created. The correction method showed more than 10%-better pass ratios in dose difference evaluation than when the correction method was not applied. The red/blue correction method resulted in 5%-improvement compared with the standard procedure that employed red color only. The correction method with EBT2 proved to be able to rapidly correct non-uniformity, and has potential for routine clinical IMRT dose verification if the accuracy of EBT2 is required to be similar to that of EDR2. The use of red/blue correction method may improve the accuracy, but we recommend we should use the red/blue correction method carefully and understand the characteristics of EBT2 for red color only and the red/blue correction method.

Static Scene Statistical Non-Uniformity Correction

DTIC Science & Technology

2015-03-01

Error NUC Non-Uniformity Correction RMSE Root Mean Squared Error RSD Relative Standard Deviation S3NUC Static Scene Statistical Non-Uniformity...Deviation ( RSD ) which normalizes the standard deviation, σ, to the mean estimated value, µ using the equation RS D = σ µ × 100. The RSD plot of the gain...estimates is shown in Figure 4.1(b). The RSD plot shows that after a sample size of approximately 10, the different photocount values and the inclusion

Quantitative Characterizations of Ultrashort Echo (UTE) Images for Supporting Air-Bone Separation in the Head

PubMed Central

Hsu, Shu-Hui; Cao, Yue; Lawrence, Theodore S.; Tsien, Christina; Feng, Mary; Grodzki, David M.; Balter, James M.

2015-01-01

Accurate separation of air and bone is critical for creating synthetic CT from MRI to support Radiation Oncology workflow. This study compares two different ultrashort echo-time sequences in the separation of air from bone, and evaluates post-processing methods that correct intensity nonuniformity of images and account for intensity gradients at tissue boundaries to improve this discriminatory power. CT and MRI scans were acquired on 12 patients under an institution review board-approved prospective protocol. The two MRI sequences tested were ultra-short TE imaging using 3D radial acquisition (UTE), and using pointwise encoding time reduction with radial acquisition (PETRA). Gradient nonlinearity correction was applied to both MR image volumes after acquisition. MRI intensity nonuniformity was corrected by vendor-provided normalization methods, and then further corrected using the N4itk algorithm. To overcome the intensity-gradient at air-tissue boundaries, spatial dilations, from 0 to 4 mm, were applied to threshold-defined air regions from MR images. Receiver operating characteristic (ROC) analyses, by comparing predicted (defined by MR images) versus “true” regions of air and bone (defined by CT images), were performed with and without residual bias field correction and local spatial expansion. The post-processing corrections increased the areas under the ROC curves (AUC) from 0.944 ± 0.012 to 0.976 ± 0.003 for UTE images, and from 0.850 ± 0.022 to 0.887 ± 0.012 for PETRA images, compared to without corrections. When expanding the threshold-defined air volumes, as expected, sensitivity of air identification decreased with an increase in specificity of bone discrimination, but in a non-linear fashion. A 1-mm air mask expansion yielded AUC increases of 1% and 4% for UTE and PETRA images, respectively. UTE images had significantly greater discriminatory power in separating air from bone than PETRA images. Post-processing strategies improved the discriminatory power of air from bone for both UTE and PETRA images, and reduced the difference between the two imaging sequences. Both postprocessed UTE and PETRA images demonstrated sufficient power to discriminate air from bone to support synthetic CT generation from MRI data. PMID:25776205

Restoration of MRI data for intensity non-uniformities using local high order intensity statistics

PubMed Central

Hadjidemetriou, Stathis; Studholme, Colin; Mueller, Susanne; Weiner, Michael; Schuff, Norbert

2008-01-01

MRI at high magnetic fields (>3.0 T) is complicated by strong inhomogeneous radio-frequency fields, sometimes termed the “bias field”. These lead to non-biological intensity non-uniformities across the image. They can complicate further image analysis such as registration and tissue segmentation. Existing methods for intensity uniformity restoration have been optimized for 1.5 T, but they are less effective for 3.0 T MRI, and not at all satisfactory for higher fields. Also, many of the existing restoration algorithms require a brain template or use a prior atlas, which can restrict their practicalities. In this study an effective intensity uniformity restoration algorithm has been developed based on non-parametric statistics of high order local intensity co-occurrences. These statistics are restored with a non-stationary Wiener filter. The algorithm also assumes a smooth non-uniformity and is stable. It does not require a prior atlas and is robust to variations in anatomy. In geriatric brain imaging it is robust to variations such as enlarged ventricles and low contrast to noise ratio. The co-occurrence statistics improve robustness to whole head images with pronounced non-uniformities present in high field acquisitions. Its significantly improved performance and lower time requirements have been demonstrated by comparing it to the very commonly used N3 algorithm on BrainWeb MR simulator images as well as on real 4 T human head images. PMID:18621568

Nonuniform sampling techniques for antenna applications

NASA Technical Reports Server (NTRS)

Rahmat-Samii, Yahya; Cheung, Rudolf Lap-Tung

1987-01-01

A two-dimensional sampling technique, which can employ irregularly spaced samples (amplitude and phase) in order to generate the complete far-field patterns is presented. The technique implements a matrix inversion algorithm, which depends only on the nonuniform sampled data point locations and with no dependence on the actual field values at these points. A powerful simulation algorithm is presented to allow a real-life simulation of many reflector/feed configurations and to determine the usefulness of the nonuniform sampling technique for the copolar and cross-polar patterns. Additionally, an overlapped window concept and a generalized error simulation model are discussed to identify the stability of the technique for recovering the field data among the nonuniform sampled data. Numerical results are tailored for the pattern reconstruction of a 20-m offset reflector antenna operating at L-band. This reflector is planned to be used in a proposed measurement concept of large antenna aboard the Space Shuttle, whereby it would be almost impractical to accurately control the movement of the Shuttle with respect to the RF source in prescribed directions in order to generate uniform sampled points. Also, application of the nonuniform sampling technique to patterns obtained using near-field measured data is demonstrated. Finally, results of an actual far-field measurement are presented for the construction of patterns of a reflector antenna from a set of nonuniformly distributed measured amplitude and phase data.

A two-dimensional matrix correction for off-axis portal dose prediction errors

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bailey, Daniel W.; Department of Radiation Medicine, Roswell Park Cancer Institute, Buffalo, New York 14263; Kumaraswamy, Lalith

2013-05-15

Purpose: This study presents a follow-up to a modified calibration procedure for portal dosimetry published by Bailey et al. ['An effective correction algorithm for off-axis portal dosimetry errors,' Med. Phys. 36, 4089-4094 (2009)]. A commercial portal dose prediction system exhibits disagreement of up to 15% (calibrated units) between measured and predicted images as off-axis distance increases. The previous modified calibration procedure accounts for these off-axis effects in most regions of the detecting surface, but is limited by the simplistic assumption of radial symmetry. Methods: We find that a two-dimensional (2D) matrix correction, applied to each calibrated image, accounts for off-axismore » prediction errors in all regions of the detecting surface, including those still problematic after the radial correction is performed. The correction matrix is calculated by quantitative comparison of predicted and measured images that span the entire detecting surface. The correction matrix was verified for dose-linearity, and its effectiveness was verified on a number of test fields. The 2D correction was employed to retrospectively examine 22 off-axis, asymmetric electronic-compensation breast fields, five intensity-modulated brain fields (moderate-high modulation) manipulated for far off-axis delivery, and 29 intensity-modulated clinical fields of varying complexity in the central portion of the detecting surface. Results: Employing the matrix correction to the off-axis test fields and clinical fields, predicted vs measured portal dose agreement improves by up to 15%, producing up to 10% better agreement than the radial correction in some areas of the detecting surface. Gamma evaluation analyses (3 mm, 3% global, 10% dose threshold) of predicted vs measured portal dose images demonstrate pass rate improvement of up to 75% with the matrix correction, producing pass rates that are up to 30% higher than those resulting from the radial correction technique alone. As in the 1D correction case, the 2D algorithm leaves the portal dosimetry process virtually unchanged in the central portion of the detector, and thus these correction algorithms are not needed for centrally located fields of moderate size (at least, in the case of 6 MV beam energy).Conclusion: The 2D correction improves the portal dosimetry results for those fields for which the 1D correction proves insufficient, especially in the inplane, off-axis regions of the detector. This 2D correction neglects the relatively smaller discrepancies that may be caused by backscatter from nonuniform machine components downstream from the detecting layer.« less

Shutterless solution for simultaneous focal plane array temperature estimation and nonuniformity correction in uncooled long-wave infrared camera.

PubMed

Cao, Yanpeng; Tisse, Christel-Loic

2013-09-01

In uncooled long-wave infrared (LWIR) microbolometer imaging systems, temperature fluctuations of the focal plane array (FPA) result in thermal drift and spatial nonuniformity. In this paper, we present a novel approach based on single-image processing to simultaneously estimate temperature variances of FPAs and compensate the resulting temperature-dependent nonuniformity. Through well-controlled thermal calibrations, empirical behavioral models are derived to characterize the relationship between the responses of microbolometer and FPA temperature variations. Then, under the assumption that strong dependency exists between spatially adjacent pixels, we estimate the optimal FPA temperature so as to minimize the global intensity variance across the entire thermal infrared image. We make use of the estimated FPA temperature to infer an appropriate nonuniformity correction (NUC) profile. The performance and robustness of the proposed temperature-adaptive NUC method are evaluated on realistic IR images obtained by a 640 × 512 pixels uncooled LWIR microbolometer imaging system operating in a significantly changed temperature environment.

Intensity non-uniformity correction in MRI: existing methods and their validation.

PubMed

Belaroussi, Boubakeur; Milles, Julien; Carme, Sabin; Zhu, Yue Min; Benoit-Cattin, Hugues

2006-04-01

Magnetic resonance imaging is a popular and powerful non-invasive imaging technique. Automated analysis has become mandatory to efficiently cope with the large amount of data generated using this modality. However, several artifacts, such as intensity non-uniformity, can degrade the quality of acquired data. Intensity non-uniformity consists in anatomically irrelevant intensity variation throughout data. It can be induced by the choice of the radio-frequency coil, the acquisition pulse sequence and by the nature and geometry of the sample itself. Numerous methods have been proposed to correct this artifact. In this paper, we propose an overview of existing methods. We first sort them according to their location in the acquisition/processing pipeline. Sorting is then refined based on the assumptions those methods rely on. Next, we present the validation protocols used to evaluate these different correction schemes both from a qualitative and a quantitative point of view. Finally, availability and usability of the presented methods is discussed.

Real-Time Correction By Optical Tracking with Integrated Geometric Distortion Correction for Reducing Motion Artifacts in fMRI

NASA Astrophysics Data System (ADS)

Rotenberg, David J.

Artifacts caused by head motion are a substantial source of error in fMRI that limits its use in neuroscience research and clinical settings. Real-time scan-plane correction by optical tracking has been shown to correct slice misalignment and non-linear spin-history artifacts, however residual artifacts due to dynamic magnetic field non-uniformity may remain in the data. A recently developed correction technique, PLACE, can correct for absolute geometric distortion using the complex image data from two EPI images, with slightly shifted k-space trajectories. We present a correction approach that integrates PLACE into a real-time scan-plane update system by optical tracking, applied to a tissue-equivalent phantom undergoing complex motion and an fMRI finger tapping experiment with overt head motion to induce dynamic field non-uniformity. Experiments suggest that including volume by volume geometric distortion correction by PLACE can suppress dynamic geometric distortion artifacts in a phantom and in vivo and provide more robust activation maps.

Development of a non-contact diagnostic tool for high power lasers

NASA Astrophysics Data System (ADS)

Simmons, Jed A.; Guttman, Jeffrey L.; McCauley, John

2016-03-01

High power lasers in excess of 1 kW generate enough Rayleigh scatter, even in the NIR, to be detected by silicon based sensor arrays. A lens and camera system in an off-axis position can therefore be used as a non-contact diagnostic tool for high power lasers. Despite the simplicity of the concept, technical challenges have been encountered in the development of an instrument referred to as BeamWatch. These technical challenges include reducing background radiation, achieving high signal to noise ratio, reducing saturation events caused by particulates crossing the beam, correcting images to achieve accurate beam width measurements, creating algorithms for the removal of non-uniformities, and creating two simultaneous views of the beam from orthogonal directions. Background radiation in the image was reduced by the proper positioning of the back plane and the placement of absorbing materials on the internal surfaces of BeamWatch. Maximizing signal to noise ratio, important to the real-time monitoring of focus position, was aided by increasing lens throughput. The number of particulates crossing the beam path was reduced by creating a positive pressure inside BeamWatch. Algorithms in the software removed non-uniformities in the data prior to generating waist width, divergence, BPP, and M2 results. A dual axis version of BeamWatch was developed by the use of mirrors. By its nature BeamWatch produced results similar to scanning slit measurements. Scanning slit data was therefore taken and compared favorably with BeamWatch results.

Functional validation and comparison framework for EIT lung imaging.

PubMed

Grychtol, Bartłomiej; Elke, Gunnar; Meybohm, Patrick; Weiler, Norbert; Frerichs, Inéz; Adler, Andy

2014-01-01

Electrical impedance tomography (EIT) is an emerging clinical tool for monitoring ventilation distribution in mechanically ventilated patients, for which many image reconstruction algorithms have been suggested. We propose an experimental framework to assess such algorithms with respect to their ability to correctly represent well-defined physiological changes. We defined a set of clinically relevant ventilation conditions and induced them experimentally in 8 pigs by controlling three ventilator settings (tidal volume, positive end-expiratory pressure and the fraction of inspired oxygen). In this way, large and discrete shifts in global and regional lung air content were elicited. We use the framework to compare twelve 2D EIT reconstruction algorithms, including backprojection (the original and still most frequently used algorithm), GREIT (a more recent consensus algorithm for lung imaging), truncated singular value decomposition (TSVD), several variants of the one-step Gauss-Newton approach and two iterative algorithms. We consider the effects of using a 3D finite element model, assuming non-uniform background conductivity, noise modeling, reconstructing for electrode movement, total variation (TV) reconstruction, robust error norms, smoothing priors, and using difference vs. normalized difference data. Our results indicate that, while variation in appearance of images reconstructed from the same data is not negligible, clinically relevant parameters do not vary considerably among the advanced algorithms. Among the analysed algorithms, several advanced algorithms perform well, while some others are significantly worse. Given its vintage and ad-hoc formulation backprojection works surprisingly well, supporting the validity of previous studies in lung EIT.

Projection-based estimation and nonuniformity correction of sensitivity profiles in phased-array surface coils.

PubMed

Yun, Sungdae; Kyriakos, Walid E; Chung, Jun-Young; Han, Yeji; Yoo, Seung-Schik; Park, Hyunwook

2007-03-01

To develop a novel approach for calculating the accurate sensitivity profiles of phased-array coils, resulting in correction of nonuniform intensity in parallel MRI. The proposed intensity-correction method estimates the accurate sensitivity profile of each channel of the phased-array coil. The sensitivity profile is estimated by fitting a nonlinear curve to every projection view through the imaged object. The nonlinear curve-fitting efficiently obtains the low-frequency sensitivity profile by eliminating the high-frequency image contents. Filtered back-projection (FBP) is then used to compute the estimates of the sensitivity profile of each channel. The method was applied to both phantom and brain images acquired from the phased-array coil. Intensity-corrected images from the proposed method had more uniform intensity than those obtained by the commonly used sum-of-squares (SOS) approach. With the use of the proposed correction method, the intensity variation was reduced to 6.1% from 13.1% of the SOS. When the proposed approach was applied to the computation of the sensitivity maps during sensitivity encoding (SENSE) reconstruction, it outperformed the SOS approach in terms of the reconstructed image uniformity. The proposed method is more effective at correcting the intensity nonuniformity of phased-array surface-coil images than the conventional SOS method. In addition, the method was shown to be resilient to noise and was successfully applied for image reconstruction in parallel imaging.

On-line determination of pork color and intramuscular fat by computer vision

NASA Astrophysics Data System (ADS)

Liao, Yi-Tao; Fan, Yu-Xia; Wu, Xue-Qian; Xie, Li-juan; Cheng, Fang

2010-04-01

In this study, the application potential of computer vision in on-line determination of CIE L*a*b* and content of intramuscular fat (IMF) of pork was evaluated. Images of pork chop from 211 pig carcasses were captured while samples were on a conveyor belt at the speed of 0.25 m•s-1 to simulate the on-line environment. CIE L*a*b* and IMF content were measured with colorimeter and chemical extractor as reference. The KSW algorithm combined with region selection was employed in eliminating the surrounding fat of longissimus dorsi muscle (MLD). RGB values of the pork were counted and five methods were applied for transforming RGB values to CIE L*a*b* values. The region growing algorithm with multiple seed points was applied to mask out the IMF pixels within the intensity corrected images. The performances of the proposed algorithms were verified by comparing the measured reference values and the quality characteristics obtained by image processing. MLD region of six samples could not be identified using the KSW algorithm. Intensity nonuniformity of pork surface in the image can be eliminated efficiently, and IMF region of three corrected images failed to be extracted. Given considerable variety of color and complexity of the pork surface, CIE L*, a* and b* color of MLD could be predicted with correlation coefficients of 0.84, 0.54 and 0.47 respectively, and IMF content could be determined with a correlation coefficient more than 0.70. The study demonstrated that it is feasible to evaluate CIE L*a*b* values and IMF content on-line using computer vision.

Convex Accelerated Maximum Entropy Reconstruction

PubMed Central

Worley, Bradley

2016-01-01

Maximum entropy (MaxEnt) spectral reconstruction methods provide a powerful framework for spectral estimation of nonuniformly sampled datasets. Many methods exist within this framework, usually defined based on the magnitude of a Lagrange multiplier in the MaxEnt objective function. An algorithm is presented here that utilizes accelerated first-order convex optimization techniques to rapidly and reliably reconstruct nonuniformly sampled NMR datasets using the principle of maximum entropy. This algorithm – called CAMERA for Convex Accelerated Maximum Entropy Reconstruction Algorithm – is a new approach to spectral reconstruction that exhibits fast, tunable convergence in both constant-aim and constant-lambda modes. A high-performance, open source NMR data processing tool is described that implements CAMERA, and brief comparisons to existing reconstruction methods are made on several example spectra. PMID:26894476

Correction of nonuniform attenuation and image fusion in SPECT imaging by means of separate X-ray CT.

PubMed

Kashiwagi, Toru; Yutani, Kenji; Fukuchi, Minoru; Naruse, Hitoshi; Iwasaki, Tadaaki; Yokozuka, Koichi; Inoue, Shinichi; Kondo, Shoji

2002-06-01

Improvements in image quality and quantitation measurement, and the addition of detailed anatomical structures are important topics for single-photon emission tomography (SPECT). The goal of this study was to develop a practical system enabling both nonuniform attenuation correction and image fusion of SPECT images by means of high-performance X-ray computed tomography (CT). A SPECT system and a helical X-ray CT system were placed next to each other and linked with Ethernet. To avoid positional differences between the SPECT and X-ray CT studies, identical flat patient tables were used for both scans; body distortion was minimized with laser beams from the upper and lateral directions to detect the position of the skin surface. For the raw projection data of SPECT, a scatter correction was performed with the triple energy window method. Image fusion of the X-ray CT and SPECT images was performed automatically by auto-registration of fiducial markers attached to the skin surface. After registration of the X-ray CT and SPECT images, an X-ray CT-derived attenuation map was created with the calibration curve for 99mTc. The SPECT images were then reconstructed with scatter and attenuation correction by means of a maximum likelihood expectation maximization algorithm. This system was evaluated in torso and cylindlical phantoms and in 4 patients referred for myocardial SPECT imaging with Tc-99m tetrofosmin. In the torso phantom study, the SPECT and X-ray CT images overlapped exactly on the computer display. After scatter and attenuation correction, the artifactual activity reduction in the inferior wall of the myocardium improved. Conversely, the incresed activity around the torso surface and the lungs was reduced. In the abdomen, the liver activity, which was originally uniform, had recovered after scatter and attenuation correction processing. The clinical study also showed good overlapping of cardiac and skin surface outlines on the fused SPECT and X-ray CT images. The effectiveness of the scatter and attenuation correction process was similar to that observed in the phantom study. Because the total time required for computer processing was less than 10 minutes, this method of attenuation correction and image fusion for SPECT images is expected to become popular in clinical practice.

QIN DAWG Validation of Gradient Nonlinearity Bias Correction Workflow for Quantitative Diffusion-Weighted Imaging in Multicenter Trials.

PubMed

Malyarenko, Dariya I; Wilmes, Lisa J; Arlinghaus, Lori R; Jacobs, Michael A; Huang, Wei; Helmer, Karl G; Taouli, Bachir; Yankeelov, Thomas E; Newitt, David; Chenevert, Thomas L

2016-12-01

Previous research has shown that system-dependent gradient nonlinearity (GNL) introduces a significant spatial bias (nonuniformity) in apparent diffusion coefficient (ADC) maps. Here, the feasibility of centralized retrospective system-specific correction of GNL bias for quantitative diffusion-weighted imaging (DWI) in multisite clinical trials is demonstrated across diverse scanners independent of the scanned object. Using corrector maps generated from system characterization by ice-water phantom measurement completed in the previous project phase, GNL bias correction was performed for test ADC measurements from an independent DWI phantom (room temperature agar) at two offset locations in the bore. The precomputed three-dimensional GNL correctors were retrospectively applied to test DWI scans by the central analysis site. The correction was blinded to reference DWI of the agar phantom at magnet isocenter where the GNL bias is negligible. The performance was evaluated from changes in ADC region of interest histogram statistics before and after correction with respect to the unbiased reference ADC values provided by sites. Both absolute error and nonuniformity of the ADC map induced by GNL (median, 12%; range, -35% to +10%) were substantially reduced by correction (7-fold in median and 3-fold in range). The residual ADC nonuniformity errors were attributed to measurement noise and other non-GNL sources. Correction of systematic GNL bias resulted in a 2-fold decrease in technical variability across scanners (down to site temperature range). The described validation of GNL bias correction marks progress toward implementation of this technology in multicenter trials that utilize quantitative DWI.

QIN DAWG Validation of Gradient Nonlinearity Bias Correction Workflow for Quantitative Diffusion-Weighted Imaging in Multicenter Trials

PubMed Central

Malyarenko, Dariya I.; Wilmes, Lisa J.; Arlinghaus, Lori R.; Jacobs, Michael A.; Huang, Wei; Helmer, Karl G.; Taouli, Bachir; Yankeelov, Thomas E.; Newitt, David; Chenevert, Thomas L.

2017-01-01

Previous research has shown that system-dependent gradient nonlinearity (GNL) introduces a significant spatial bias (nonuniformity) in apparent diffusion coefficient (ADC) maps. Here, the feasibility of centralized retrospective system-specific correction of GNL bias for quantitative diffusion-weighted imaging (DWI) in multisite clinical trials is demonstrated across diverse scanners independent of the scanned object. Using corrector maps generated from system characterization by ice-water phantom measurement completed in the previous project phase, GNL bias correction was performed for test ADC measurements from an independent DWI phantom (room temperature agar) at two offset locations in the bore. The precomputed three-dimensional GNL correctors were retrospectively applied to test DWI scans by the central analysis site. The correction was blinded to reference DWI of the agar phantom at magnet isocenter where the GNL bias is negligible. The performance was evaluated from changes in ADC region of interest histogram statistics before and after correction with respect to the unbiased reference ADC values provided by sites. Both absolute error and nonuniformity of the ADC map induced by GNL (median, 12%; range, −35% to +10%) were substantially reduced by correction (7-fold in median and 3-fold in range). The residual ADC nonuniformity errors were attributed to measurement noise and other non-GNL sources. Correction of systematic GNL bias resulted in a 2-fold decrease in technical variability across scanners (down to site temperature range). The described validation of GNL bias correction marks progress toward implementation of this technology in multicenter trials that utilize quantitative DWI. PMID:28105469

Influence of signal intensity non-uniformity on brain volumetry using an atlas-based method.

PubMed

Goto, Masami; Abe, Osamu; Miyati, Tosiaki; Kabasawa, Hiroyuki; Takao, Hidemasa; Hayashi, Naoto; Kurosu, Tomomi; Iwatsubo, Takeshi; Yamashita, Fumio; Matsuda, Hiroshi; Mori, Harushi; Kunimatsu, Akira; Aoki, Shigeki; Ino, Kenji; Yano, Keiichi; Ohtomo, Kuni

2012-01-01

Many studies have reported pre-processing effects for brain volumetry; however, no study has investigated whether non-parametric non-uniform intensity normalization (N3) correction processing results in reduced system dependency when using an atlas-based method. To address this shortcoming, the present study assessed whether N3 correction processing provides reduced system dependency in atlas-based volumetry. Contiguous sagittal T1-weighted images of the brain were obtained from 21 healthy participants, by using five magnetic resonance protocols. After image preprocessing using the Statistical Parametric Mapping 5 software, we measured the structural volume of the segmented images with the WFU-PickAtlas software. We applied six different bias-correction levels (Regularization 10, Regularization 0.0001, Regularization 0, Regularization 10 with N3, Regularization 0.0001 with N3, and Regularization 0 with N3) to each set of images. The structural volume change ratio (%) was defined as the change ratio (%) = (100 × [measured volume - mean volume of five magnetic resonance protocols] / mean volume of five magnetic resonance protocols) for each bias-correction level. A low change ratio was synonymous with lower system dependency. The results showed that the images with the N3 correction had a lower change ratio compared with those without the N3 correction. The present study is the first atlas-based volumetry study to show that the precision of atlas-based volumetry improves when using N3-corrected images. Therefore, correction for signal intensity non-uniformity is strongly advised for multi-scanner or multi-site imaging trials.

Influence of Signal Intensity Non-Uniformity on Brain Volumetry Using an Atlas-Based Method

PubMed Central

Abe, Osamu; Miyati, Tosiaki; Kabasawa, Hiroyuki; Takao, Hidemasa; Hayashi, Naoto; Kurosu, Tomomi; Iwatsubo, Takeshi; Yamashita, Fumio; Matsuda, Hiroshi; Mori, Harushi; Kunimatsu, Akira; Aoki, Shigeki; Ino, Kenji; Yano, Keiichi; Ohtomo, Kuni

2012-01-01

Objective Many studies have reported pre-processing effects for brain volumetry; however, no study has investigated whether non-parametric non-uniform intensity normalization (N3) correction processing results in reduced system dependency when using an atlas-based method. To address this shortcoming, the present study assessed whether N3 correction processing provides reduced system dependency in atlas-based volumetry. Materials and Methods Contiguous sagittal T1-weighted images of the brain were obtained from 21 healthy participants, by using five magnetic resonance protocols. After image preprocessing using the Statistical Parametric Mapping 5 software, we measured the structural volume of the segmented images with the WFU-PickAtlas software. We applied six different bias-correction levels (Regularization 10, Regularization 0.0001, Regularization 0, Regularization 10 with N3, Regularization 0.0001 with N3, and Regularization 0 with N3) to each set of images. The structural volume change ratio (%) was defined as the change ratio (%) = (100 × [measured volume - mean volume of five magnetic resonance protocols] / mean volume of five magnetic resonance protocols) for each bias-correction level. Results A low change ratio was synonymous with lower system dependency. The results showed that the images with the N3 correction had a lower change ratio compared with those without the N3 correction. Conclusion The present study is the first atlas-based volumetry study to show that the precision of atlas-based volumetry improves when using N3-corrected images. Therefore, correction for signal intensity non-uniformity is strongly advised for multi-scanner or multi-site imaging trials. PMID:22778560

Evaluation of the morphology structure of meibomian glands based on mask dodging method

NASA Astrophysics Data System (ADS)

Yan, Huangping; Zuo, Yingbo; Chen, Yisha; Chen, Yanping

2016-10-01

Low contrast and non-uniform illumination of infrared (IR) meibography images make the detection of meibomian glands challengeable. An improved Mask dodging algorithm is proposed. To overcome the shortage of low contrast using traditional Mask dodging method, a scale factor is used to enhance the image after subtracting background image from an original one. Meibomian glands are detected and the ratio of the meibomian gland area to the measurement area is calculated. The results show that the improved Mask algorithm has ideal dodging effect, which can eliminate non-uniform illumination and improve contrast of meibography images effectively.

Robust Approach for Nonuniformity Correction in Infrared Focal Plane Array.

PubMed

Boutemedjet, Ayoub; Deng, Chenwei; Zhao, Baojun

2016-11-10

In this paper, we propose a new scene-based nonuniformity correction technique for infrared focal plane arrays. Our work is based on the use of two well-known scene-based methods, namely, adaptive and interframe registration-based exploiting pure translation motion model between frames. The two approaches have their benefits and drawbacks, which make them extremely effective in certain conditions and not adapted for others. Following on that, we developed a method robust to various conditions, which may slow or affect the correction process by elaborating a decision criterion that adapts the process to the most effective technique to ensure fast and reliable correction. In addition to that, problems such as bad pixels and ghosting artifacts are also dealt with to enhance the overall quality of the correction. The performance of the proposed technique is investigated and compared to the two state-of-the-art techniques cited above.

Robust Approach for Nonuniformity Correction in Infrared Focal Plane Array

PubMed Central

Boutemedjet, Ayoub; Deng, Chenwei; Zhao, Baojun

2016-01-01

In this paper, we propose a new scene-based nonuniformity correction technique for infrared focal plane arrays. Our work is based on the use of two well-known scene-based methods, namely, adaptive and interframe registration-based exploiting pure translation motion model between frames. The two approaches have their benefits and drawbacks, which make them extremely effective in certain conditions and not adapted for others. Following on that, we developed a method robust to various conditions, which may slow or affect the correction process by elaborating a decision criterion that adapts the process to the most effective technique to ensure fast and reliable correction. In addition to that, problems such as bad pixels and ghosting artifacts are also dealt with to enhance the overall quality of the correction. The performance of the proposed technique is investigated and compared to the two state-of-the-art techniques cited above. PMID:27834893

Nonuniformity correction of imaging systems with a spatially nonhomogeneous radiation source.

PubMed

Gutschwager, Berndt; Hollandt, Jörg

2015-12-20

We present a novel method of nonuniformity correction of imaging systems in a wide optical spectral range by applying a radiation source with an unknown and spatially nonhomogeneous radiance or radiance temperature distribution. The benefit of this method is that it can be applied with radiation sources of arbitrary spatial radiance or radiance temperature distribution and only requires the sufficient temporal stability of this distribution during the measurement process. The method is based on the recording of several (at least three) images of a radiation source and a purposeful row- and line-shift of these sequent images in relation to the first primary image. The mathematical procedure is explained in detail. Its numerical verification with a source of a predefined nonhomogenous radiance distribution and a thermal imager of a predefined nonuniform focal plane array responsivity is presented.

Conference Proceedings of Machine Intelligence for Aerospace Electronic Systems Held in Lisbon, Portugal on 13-16 May 1991 (L’Intelligence Artificielle dans les Systemes Electroniques Aerospatiaux)

DTIC Science & Technology

1991-09-01

more closely matched description is that of finding the distribution with the nature of the application problem. of current flow through a nonuniform ...multiprocessors, may not be effective finding the propagation of wavefronts through a in solving traditional algorithms for these medium with a nonuniform ...properties of the paths are variable cost function is similar to the noteworthy. First, every heading from the start nonuniform resistivity of the plate

Correction of motion artifacts in OCT-AFI data collected in airways (Conference Presentation)

NASA Astrophysics Data System (ADS)

Abouei, Elham; Lane, Pierre M.; Pahlevaninezhad, Hamid; Lee, Anthony; Lam, Stephen; MacAulay, Calum E.

2016-03-01

Abstract: Optical coherence tomography (OCT) provides in vivo imaging with near-histologic resolution of tissue morphology. OCT has been successfully employed in clinical practice in non-pulmonary fields of medicine such as ophthalmology and cardiology. Studies suggest that OCT has the potential to be a powerful tool for the detection and localization of malignant and non-malignant pulmonary diseases. The combination of OCT with autofluorescence imaging (AFI) provides valuable information about the structural and metabolic state of tissues. Successful application of OCT or OCT-AFI to the field of pulmonary medicine requires overcoming several challenges. This work address those associated with motion: cardiac cycle, breathing and non-uniform rotation distortion (NURD) artifacts. Mechanically rotated endoscopic probes often suffer from image degradation due to NURD. In addition cardiac and breathing motion artifacts may be present in-vivo that are not seen ex-vivo. These motion artifacts can be problematic in OCT-AFI systems with slower acquisition rates and have been observed to generate identifiable prominent artifacts which make confident interpretation of observed structures (blood vessels, etc) difficult. Understanding and correcting motion artifact could improve the image quality and interpretation. In this work, the motion artifacts in pulmonary OCT-AFI data sets are estimated in both AFI and OCT images using a locally adaptive registration algorithm that can be used to correct/reduce such artifacts. Performance of the algorithm is evaluated on images of a NURD phantom and on in-vivo OCT-AFI datasets of peripheral lung airways.

Quantification of regional myocardial blood flow estimation with three-dimensional dynamic rubidium-82 PET and modified spillover correction model.

PubMed

Katoh, Chietsugu; Yoshinaga, Keiichiro; Klein, Ran; Kasai, Katsuhiko; Tomiyama, Yuuki; Manabe, Osamu; Naya, Masanao; Sakakibara, Mamoru; Tsutsui, Hiroyuki; deKemp, Robert A; Tamaki, Nagara

2012-08-01

Myocardial blood flow (MBF) estimation with (82)Rubidium ((82)Rb) positron emission tomography (PET) is technically difficult because of the high spillover between regions of interest, especially due to the long positron range. We sought to develop a new algorithm to reduce the spillover in image-derived blood activity curves, using non-uniform weighted least-squares fitting. Fourteen volunteers underwent imaging with both 3-dimensional (3D) (82)Rb and (15)O-water PET at rest and during pharmacological stress. Whole left ventricular (LV) (82)Rb MBF was estimated using a one-compartment model, including a myocardium-to-blood spillover correction to estimate the corresponding blood input function Ca(t)(whole). Regional K1 values were calculated using this uniform global input function, which simplifies equations and enables robust estimation of MBF. To assess the robustness of the modified algorithm, inter-operator repeatability of 3D (82)Rb MBF was compared with a previously established method. Whole LV correlation of (82)Rb MBF with (15)O-water MBF was better (P < .01) with the modified spillover correction method (r = 0.92 vs r = 0.60). The modified method also yielded significantly improved inter-operator repeatability of regional MBF quantification (r = 0.89) versus the established method (r = 0.82) (P < .01). A uniform global input function can suppress LV spillover into the image-derived blood input function, resulting in improved precision for MBF quantification with 3D (82)Rb PET.

Experimental derivation of the fluence non-uniformity correction for air kerma near brachytherapy linear sources

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vianello, E. A.; Almeida, C. E. de

2008-07-15

In brachytherapy, one of the elements to take into account for measurements free in air is the non-uniformity of the photon fluence due to the beam divergence that causes a steep dose gradient near the source. The correction factors for this phenomenon have been usually evaluated by two available theories by Kondo and Randolph [Radiat. Res. 13, 37-60 (1960)] and Bielajew [Phys. Med. Biol. 35, 517-538 (1990)], both conceived for point sources. This work presents the experimental validation of the Monte Carlo calculations made by Rodriguez and deAlmeida [Phys. Med. Biol. 49, 1705-1709 (2004)] for the non-uniformity correction specifically formore » a Cs-137 linear source measured using a Farmer type ionization chamber. The experimental values agree very well with the Monte Carlo calculations and differ from the results predicted by both theoretical models widely used. This result confirms that for linear sources there are some important differences at short distances from the source and emphasizes that those theories should not be used for linear sources. The data provided in this study confirm the limitations of the mentioned theories when linear sources are used. Considering the difficulties and uncertainties associated with the experimental measurements, it is recommended to use the Monte Carlo data to assess the non-uniformity factors for linear sources in situations that require this knowledge.« less

Nonuniformity correction of infrared cameras by reading radiance temperatures with a spatially nonhomogeneous radiation source

NASA Astrophysics Data System (ADS)

Gutschwager, Berndt; Hollandt, Jörg

2017-01-01

We present a novel method of nonuniformity correction (NUC) of infrared cameras and focal plane arrays (FPA) in a wide optical spectral range by reading radiance temperatures and by applying a radiation source with an unknown and spatially nonhomogeneous radiance temperature distribution. The benefit of this novel method is that it works with the display and the calculation of radiance temperatures, it can be applied to radiation sources of arbitrary spatial radiance temperature distribution, and it only requires sufficient temporal stability of this distribution during the measurement process. In contrast to this method, an initially presented method described the calculation of NUC correction with the reading of monitored radiance values. Both methods are based on the recording of several (at least three) images of a radiation source and a purposeful row- and line-shift of these sequent images in relation to the first primary image. The mathematical procedure is explained in detail. Its numerical verification with a source of a predefined nonhomogeneous radiance temperature distribution and a thermal imager of a predefined nonuniform FPA responsivity is presented.

Modified Hitschfeld-Bordan Equations for Attenuation-Corrected Radar Rain Reflectivity: Application to Nonuniform Beamfilling at Off-Nadir Incidence

NASA Technical Reports Server (NTRS)

Meneghini, Robert; Liao, Liang

2013-01-01

As shown by Takahashi et al., multiple path attenuation estimates over the field of view of an airborne or spaceborne weather radar are feasible for off-nadir incidence angles. This follows from the fact that the surface reference technique, which provides path attenuation estimates, can be applied to each radar range gate that intersects the surface. This study builds on this result by showing that three of the modified Hitschfeld-Bordan estimates for the attenuation-corrected radar reflectivity factor can be generalized to the case where multiple path attenuation estimates are available, thereby providing a correction to the effects of nonuniform beamfilling. A simple simulation is presented showing some strengths and weaknesses of the approach.

Total variation approach for adaptive nonuniformity correction in focal-plane arrays.

PubMed

Vera, Esteban; Meza, Pablo; Torres, Sergio

2011-01-15

In this Letter we propose an adaptive scene-based nonuniformity correction method for fixed-pattern noise removal in imaging arrays. It is based on the minimization of the total variation of the estimated irradiance, and the resulting function is optimized by an isotropic total variation approach making use of an alternating minimization strategy. The proposed method provides enhanced results when applied to a diverse set of real IR imagery, accurately estimating the nonunifomity parameters of each detector in the focal-plane array at a fast convergence rate, while also forming fewer ghosting artifacts.

Spectral turning bands for efficient Gaussian random fields generation on GPUs and accelerators

NASA Astrophysics Data System (ADS)

Hunger, L.; Cosenza, B.; Kimeswenger, S.; Fahringer, T.

2015-11-01

A random field (RF) is a set of correlated random variables associated with different spatial locations. RF generation algorithms are of crucial importance for many scientific areas, such as astrophysics, geostatistics, computer graphics, and many others. Current approaches commonly make use of 3D fast Fourier transform (FFT), which does not scale well for RF bigger than the available memory; they are also limited to regular rectilinear meshes. We introduce random field generation with the turning band method (RAFT), an RF generation algorithm based on the turning band method that is optimized for massively parallel hardware such as GPUs and accelerators. Our algorithm replaces the 3D FFT with a lower-order, one-dimensional FFT followed by a projection step and is further optimized with loop unrolling and blocking. RAFT can easily generate RF on non-regular (non-uniform) meshes and efficiently produce fields with mesh sizes bigger than the available device memory by using a streaming, out-of-core approach. Our algorithm generates RF with the correct statistical behavior and is tested on a variety of modern hardware, such as NVIDIA Tesla, AMD FirePro and Intel Phi. RAFT is faster than the traditional methods on regular meshes and has been successfully applied to two real case scenarios: planetary nebulae and cosmological simulations.

Functional Validation and Comparison Framework for EIT Lung Imaging

PubMed Central

Meybohm, Patrick; Weiler, Norbert; Frerichs, Inéz; Adler, Andy

2014-01-01

Introduction Electrical impedance tomography (EIT) is an emerging clinical tool for monitoring ventilation distribution in mechanically ventilated patients, for which many image reconstruction algorithms have been suggested. We propose an experimental framework to assess such algorithms with respect to their ability to correctly represent well-defined physiological changes. We defined a set of clinically relevant ventilation conditions and induced them experimentally in 8 pigs by controlling three ventilator settings (tidal volume, positive end-expiratory pressure and the fraction of inspired oxygen). In this way, large and discrete shifts in global and regional lung air content were elicited. Methods We use the framework to compare twelve 2D EIT reconstruction algorithms, including backprojection (the original and still most frequently used algorithm), GREIT (a more recent consensus algorithm for lung imaging), truncated singular value decomposition (TSVD), several variants of the one-step Gauss-Newton approach and two iterative algorithms. We consider the effects of using a 3D finite element model, assuming non-uniform background conductivity, noise modeling, reconstructing for electrode movement, total variation (TV) reconstruction, robust error norms, smoothing priors, and using difference vs. normalized difference data. Results and Conclusions Our results indicate that, while variation in appearance of images reconstructed from the same data is not negligible, clinically relevant parameters do not vary considerably among the advanced algorithms. Among the analysed algorithms, several advanced algorithms perform well, while some others are significantly worse. Given its vintage and ad-hoc formulation backprojection works surprisingly well, supporting the validity of previous studies in lung EIT. PMID:25110887

Uncertainty Footprint: Visualization of Nonuniform Behavior of Iterative Algorithms Applied to 4D Cell Tracking

PubMed Central

Wan, Y.; Hansen, C.

2018-01-01

Research on microscopy data from developing biological samples usually requires tracking individual cells over time. When cells are three-dimensionally and densely packed in a time-dependent scan of volumes, tracking results can become unreliable and uncertain. Not only are cell segmentation results often inaccurate to start with, but it also lacks a simple method to evaluate the tracking outcome. Previous cell tracking methods have been validated against benchmark data from real scans or artificial data, whose ground truth results are established by manual work or simulation. However, the wide variety of real-world data makes an exhaustive validation impossible. Established cell tracking tools often fail on new data, whose issues are also difficult to diagnose with only manual examinations. Therefore, data-independent tracking evaluation methods are desired for an explosion of microscopy data with increasing scale and resolution. In this paper, we propose the uncertainty footprint, an uncertainty quantification and visualization technique that examines nonuniformity at local convergence for an iterative evaluation process on a spatial domain supported by partially overlapping bases. We demonstrate that the patterns revealed by the uncertainty footprint indicate data processing quality in two algorithms from a typical cell tracking workflow – cell identification and association. A detailed analysis of the patterns further allows us to diagnose issues and design methods for improvements. A 4D cell tracking workflow equipped with the uncertainty footprint is capable of self diagnosis and correction for a higher accuracy than previous methods whose evaluation is limited by manual examinations. PMID:29456279

Fluid surface compensation in digital holographic microscopy for topography measurement

NASA Astrophysics Data System (ADS)

Lin, Li-Chien; Tu, Han-Yen; Lai, Xin-Ji; Wang, Sheng-Shiun; Cheng, Chau-Jern

2012-06-01

A novel technique is presented for surface compensation and topography measurement of a specimen in fluid medium by digital holographic microscopy (DHM). In the measurement, the specimen is preserved in a culture dish full of liquid culture medium and an environmental vibration induces a series of ripples to create a non-uniform background on the reconstructed phase image. A background surface compensation algorithm is proposed to account for this problem. First, we distinguish the cell image from the non-uniform background and a morphological image operation is used to reduce the noise effect on the background surface areas. Then, an adaptive sampling from the background surface is employed, taking dense samples from the high-variation area while leaving the smooth region mostly untouched. A surface fitting algorithm based on the optimal bi-cubic functional approximation is used to establish a whole background surface for the phase image. Once the background surface is found, the background compensated phase can be obtained by subtracting the estimated background from the original phase image. From the experimental results, the proposed algorithm performs effectively in removing the non-uniform background of the phase image and has the ability to obtain the specimen topography inside fluid medium under environmental vibrations.

EROS Data Center Landsat digital enhancement techniques and imagery availability

USGS Publications Warehouse

Rohde, Wayne G.; Lo, Jinn Kai; Pohl, Russell A.

1978-01-01

The US Geological Survey's EROS Data Center (EDC) is experimenting with the production of digitally enhanced Landsat imagery. Advanced digital image processing techniques are used to perform geometric and radiometric corrections and to perform contrast and edge enhancements. The enhanced image product is produced from digitally preprocessed Landsat computer compatible tapes (CCTs) on a laser beam film recording system. Landsat CCT data have several geometric distortions which are corrected when NASA produces the standard film products. When producing film images from CCT's, geometric correction of the data is required. The EDC Digital Image Enhancement System (EDIES) compensates for geometric distortions introduced by Earth's rotation, variable line length, non-uniform mirror scan velocity, and detector misregistration. Radiometric anomalies such as bad data lines and striping are common to many Landsat film products and are also in the CCT data. Bad data lines or line segments with more than 150 contiguous bad pixels are corrected by inserting data from the previous line in place of the bad data. Striping, caused by variations in detector gain and offset, is removed with a destriping algorithm applied after digitally enhancing the data. Image enhancement is performed by applying a linear contrast stretch and an edge enhancement algorithm. The linear contrast enhancement algorithm is designed to expand digitally the full range of useful data recorded on the CCT over the range of 256 digital counts. This minimizes the effect of atmospheric scattering and saturates the relative brightness of highly reflecting features such as clouds or snow. It is the intent that no meaningful terrain data are eliminated by the digital processing. The edge enhancement algorithm is designed to enhance boundaries between terrain features that exhibit subtle differences in brightness values along edges of features. After the digital data have been processed, data for each Landsat band are recorded on black-and-white film with a laser beam film recorder (LBR). The LBR corrects for aspect ratio distortions as the digital data are recorded on the recording film over a preselected density range. Positive transparencies of MSS bands 4, 5, and 7 produced by the LBR are used to make color composite transparencies. Color film positives are made photographically from first generation black-and-white products generated on the LBR.

Nonuniform update for sparse target recovery in fluorescence molecular tomography accelerated by ordered subsets.

PubMed

Zhu, Dianwen; Li, Changqing

2014-12-01

Fluorescence molecular tomography (FMT) is a promising imaging modality and has been actively studied in the past two decades since it can locate the specific tumor position three-dimensionally in small animals. However, it remains a challenging task to obtain fast, robust and accurate reconstruction of fluorescent probe distribution in small animals due to the large computational burden, the noisy measurement and the ill-posed nature of the inverse problem. In this paper we propose a nonuniform preconditioning method in combination with L (1) regularization and ordered subsets technique (NUMOS) to take care of the different updating needs at different pixels, to enhance sparsity and suppress noise, and to further boost convergence of approximate solutions for fluorescence molecular tomography. Using both simulated data and phantom experiment, we found that the proposed nonuniform updating method outperforms its popular uniform counterpart by obtaining a more localized, less noisy, more accurate image. The computational cost was greatly reduced as well. The ordered subset (OS) technique provided additional 5 times and 3 times speed enhancements for simulation and phantom experiments, respectively, without degrading image qualities. When compared with the popular L (1) algorithms such as iterative soft-thresholding algorithm (ISTA) and Fast iterative soft-thresholding algorithm (FISTA) algorithms, NUMOS also outperforms them by obtaining a better image in much shorter period of time.

NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data.

PubMed

Pnevmatikakis, Eftychios A; Giovannucci, Andrea

2017-11-01

Motion correction is a challenging pre-processing problem that arises early in the analysis pipeline of calcium imaging data sequences. The motion artifacts in two-photon microscopy recordings can be non-rigid, arising from the finite time of raster scanning and non-uniform deformations of the brain medium. We introduce an algorithm for fast Non-Rigid Motion Correction (NoRMCorre) based on template matching. NoRMCorre operates by splitting the field of view (FOV) into overlapping spatial patches along all directions. The patches are registered at a sub-pixel resolution for rigid translation against a regularly updated template. The estimated alignments are subsequently up-sampled to create a smooth motion field for each frame that can efficiently approximate non-rigid artifacts in a piecewise-rigid manner. Existing approaches either do not scale well in terms of computational performance or are targeted to non-rigid artifacts arising just from the finite speed of raster scanning, and thus cannot correct for non-rigid motion observable in datasets from a large FOV. NoRMCorre can be run in an online mode resulting in comparable to or even faster than real time motion registration of streaming data. We evaluate its performance with simple yet intuitive metrics and compare against other non-rigid registration methods on simulated data and in vivo two-photon calcium imaging datasets. Open source Matlab and Python code is also made available. The proposed method and accompanying code can be useful for solving large scale image registration problems in calcium imaging, especially in the presence of non-rigid deformations. Copyright © 2017 The Author(s). Published by Elsevier B.V. All rights reserved.

Use of high-granularity CdZnTe pixelated detectors to correct response non-uniformities caused by defects in crystals

DOE PAGES

Bolotnikov, A. E.; Camarda, G. S.; Cui, Y.; ...

2015-09-06

Following our successful demonstration of the position-sensitive virtual Frisch-grid detectors, we investigated the feasibility of using high-granularity position sensing to correct response non-uniformities caused by the crystal defects in CdZnTe (CZT) pixelated detectors. The development of high-granularity detectors able to correct response non-uniformities on a scale comparable to the size of electron clouds opens the opportunity of using unselected off-the-shelf CZT material, whilst still assuring high spectral resolution for the majority of the detectors fabricated from an ingot. Here, we present the results from testing 3D position-sensitive 15×15×10 mm 3 pixelated detectors, fabricated with conventional pixel patterns with progressively smallermore » pixel sizes: 1.4, 0.8, and 0.5 mm. We employed the readout system based on the H3D front-end multi-channel ASIC developed by BNL's Instrumentation Division in collaboration with the University of Michigan. We use the sharing of electron clouds among several adjacent pixels to measure locations of interaction points with sub-pixel resolution. By using the detectors with small-pixel sizes and a high probability of the charge-sharing events, we were able to improve their spectral resolutions in comparison to the baseline levels, measured for the 1.4-mm pixel size detectors with small fractions of charge-sharing events. These results demonstrate that further enhancement of the performance of CZT pixelated detectors and reduction of costs are possible by using high spatial-resolution position information of interaction points to correct the small-scale response non-uniformities caused by crystal defects present in most devices.« less

Extracting DNA words based on the sequence features: non-uniform distribution and integrity.

PubMed

Li, Zhi; Cao, Hongyan; Cui, Yuehua; Zhang, Yanbo

2016-01-25

DNA sequence can be viewed as an unknown language with words as its functional units. Given that most sequence alignment algorithms such as the motif discovery algorithms depend on the quality of background information about sequences, it is necessary to develop an ab initio algorithm for extracting the "words" based only on the DNA sequences. We considered that non-uniform distribution and integrity were two important features of a word, based on which we developed an ab initio algorithm to extract "DNA words" that have potential functional meaning. A Kolmogorov-Smirnov test was used for consistency test of uniform distribution of DNA sequences, and the integrity was judged by the sequence and position alignment. Two random base sequences were adopted as negative control, and an English book was used as positive control to verify our algorithm. We applied our algorithm to the genomes of Saccharomyces cerevisiae and 10 strains of Escherichia coli to show the utility of the methods. The results provide strong evidences that the algorithm is a promising tool for ab initio building a DNA dictionary. Our method provides a fast way for large scale screening of important DNA elements and offers potential insights into the understanding of a genome.

Simple Pixel Structure Using Video Data Correction Method for Nonuniform Electrical Characteristics of Polycrystalline Silicon Thin-Film Transistors and Differential Aging Phenomenon of Organic Light-Emitting Diodes

NASA Astrophysics Data System (ADS)

Hai-Jung In,; Oh-Kyong Kwon,

2010-03-01

A simple pixel structure using a video data correction method is proposed to compensate for electrical characteristic variations of driving thin-film transistors (TFTs) and the degradation of organic light-emitting diodes (OLEDs) in active-matrix OLED (AMOLED) displays. The proposed method senses the electrical characteristic variations of TFTs and OLEDs and stores them in external memory. The nonuniform emission current of TFTs and the aging of OLEDs are corrected by modulating video data using the stored data. Experimental results show that the emission current error due to electrical characteristic variation of driving TFTs is in the range from -63.1 to 61.4% without compensation, but is decreased to the range from -1.9 to 1.9% with the proposed correction method. The luminance error due to the degradation of an OLED is less than 1.8% when the proposed correction method is used for a 50% degraded OLED.

Modal analysis of a nonuniform string with end mass and variable tension

NASA Technical Reports Server (NTRS)

Rheinfurth, M. H.; Galaboff, Z. J.

1983-01-01

Modal synthesis techniques for dynamic systems containing strings describe the lateral displacements of these strings by properly chosen shape functions. An iterative algorithm is provided to calculate the natural modes of a nonuniform string and variable tension for some typical boundary conditions including one end mass. Numerical examples are given for a string in a constant and a gravity gradient force field.

Superconducting Quantum Interference Device Array Based High Frequency Direction Finding on an Airborne Platform

DTIC Science & Technology

is performed using the MUSIC algorithm on the signals received on the non-uniform phased array, and the ESPRIT algorithm is used on the signals...received on the non-colocated vector sensor. The simulation results show that the MUSIC algorithm using 2D Bi-SQUIDs is able to differentiate two signals

The Linear Bicharacteristic Scheme for Computational Electromagnetics

NASA Technical Reports Server (NTRS)

Beggs, John H.; Chan, Siew-Loong

2000-01-01

The upwind leapfrog or Linear Bicharacteristic Scheme (LBS) has previously been implemented and demonstrated on electromagnetic wave propagation problems. This paper extends the Linear Bicharacteristic Scheme for computational electromagnetics to treat lossy dielectric and magnetic materials and perfect electrical conductors. This is accomplished by proper implementation of the LBS for homogeneous lossy dielectric and magnetic media, and treatment of perfect electrical conductors (PECs) are shown to follow directly in the limit of high conductivity. Heterogeneous media are treated through implementation of surface boundary conditions and no special extrapolations or interpolations at dielectric material boundaries are required. Results are presented for one-dimensional model problems on both uniform and nonuniform grids, and the FDTD algorithm is chosen as a convenient reference algorithm for comparison. The results demonstrate that the explicit LBS is a dissipation-free, second-order accurate algorithm which uses a smaller stencil than the FDTD algorithm, yet it has approximately one-third the phase velocity error. The LBS is also more accurate on nonuniform grids.

Nonuniform grid implicit spatial finite difference method for acoustic wave modeling in tilted transversely isotropic media

NASA Astrophysics Data System (ADS)

Chu, Chunlei; Stoffa, Paul L.

2012-01-01

Discrete earth models are commonly represented by uniform structured grids. In order to ensure accurate numerical description of all wave components propagating through these uniform grids, the grid size must be determined by the slowest velocity of the entire model. Consequently, high velocity areas are always oversampled, which inevitably increases the computational cost. A practical solution to this problem is to use nonuniform grids. We propose a nonuniform grid implicit spatial finite difference method which utilizes nonuniform grids to obtain high efficiency and relies on implicit operators to achieve high accuracy. We present a simple way of deriving implicit finite difference operators of arbitrary stencil widths on general nonuniform grids for the first and second derivatives and, as a demonstration example, apply these operators to the pseudo-acoustic wave equation in tilted transversely isotropic (TTI) media. We propose an efficient gridding algorithm that can be used to convert uniformly sampled models onto vertically nonuniform grids. We use a 2D TTI salt model to demonstrate its effectiveness and show that the nonuniform grid implicit spatial finite difference method can produce highly accurate seismic modeling results with enhanced efficiency, compared to uniform grid explicit finite difference implementations.

Advanced GF(3²) nonbinary LDPC coded modulation with non-uniform 9-QAM outperforming star 8-QAM.

PubMed

Liu, Tao; Lin, Changyu; Djordjevic, Ivan B

2016-06-27

In this paper, we first describe a 9-symbol non-uniform signaling scheme based on Huffman code, in which different symbols are transmitted with different probabilities. By using the Huffman procedure, prefix code is designed to approach the optimal performance. Then, we introduce an algorithm to determine the optimal signal constellation sets for our proposed non-uniform scheme with the criterion of maximizing constellation figure of merit (CFM). The proposed nonuniform polarization multiplexed signaling 9-QAM scheme has the same spectral efficiency as the conventional 8-QAM. Additionally, we propose a specially designed GF(3²) nonbinary quasi-cyclic LDPC code for the coded modulation system based on the 9-QAM non-uniform scheme. Further, we study the efficiency of our proposed non-uniform 9-QAM, combined with nonbinary LDPC coding, and demonstrate by Monte Carlo simulation that the proposed GF(2³) nonbinary LDPC coded 9-QAM scheme outperforms nonbinary LDPC coded uniform 8-QAM by at least 0.8dB.

Characterization of 3-Dimensional PET Systems for Accurate Quantification of Myocardial Blood Flow.

PubMed

Renaud, Jennifer M; Yip, Kathy; Guimond, Jean; Trottier, Mikaël; Pibarot, Philippe; Turcotte, Eric; Maguire, Conor; Lalonde, Lucille; Gulenchyn, Karen; Farncombe, Troy; Wisenberg, Gerald; Moody, Jonathan; Lee, Benjamin; Port, Steven C; Turkington, Timothy G; Beanlands, Rob S; deKemp, Robert A

2017-01-01

Three-dimensional (3D) mode imaging is the current standard for PET/CT systems. Dynamic imaging for quantification of myocardial blood flow with short-lived tracers, such as 82 Rb-chloride, requires accuracy to be maintained over a wide range of isotope activities and scanner counting rates. We proposed new performance standard measurements to characterize the dynamic range of PET systems for accurate quantitative imaging. 82 Rb or 13 N-ammonia (1,100-3,000 MBq) was injected into the heart wall insert of an anthropomorphic torso phantom. A decaying isotope scan was obtained over 5 half-lives on 9 different 3D PET/CT systems and 1 3D/2-dimensional PET-only system. Dynamic images (28 × 15 s) were reconstructed using iterative algorithms with all corrections enabled. Dynamic range was defined as the maximum activity in the myocardial wall with less than 10% bias, from which corresponding dead-time, counting rates, and/or injected activity limits were established for each scanner. Scatter correction residual bias was estimated as the maximum cavity blood-to-myocardium activity ratio. Image quality was assessed via the coefficient of variation measuring nonuniformity of the left ventricular myocardium activity distribution. Maximum recommended injected activity/body weight, peak dead-time correction factor, counting rates, and residual scatter bias for accurate cardiac myocardial blood flow imaging were 3-14 MBq/kg, 1.5-4.0, 22-64 Mcps singles and 4-14 Mcps prompt coincidence counting rates, and 2%-10% on the investigated scanners. Nonuniformity of the myocardial activity distribution varied from 3% to 16%. Accurate dynamic imaging is possible on the 10 3D PET systems if the maximum injected MBq/kg values are respected to limit peak dead-time losses during the bolus first-pass transit. © 2017 by the Society of Nuclear Medicine and Molecular Imaging.

Modeling and Compensating Temperature-Dependent Non-Uniformity Noise in IR Microbolometer Cameras

PubMed Central

Wolf, Alejandro; Pezoa, Jorge E.; Figueroa, Miguel

2016-01-01

Images rendered by uncooled microbolometer-based infrared (IR) cameras are severely degraded by the spatial non-uniformity (NU) noise. The NU noise imposes a fixed-pattern over the true images, and the intensity of the pattern changes with time due to the temperature instability of such cameras. In this paper, we present a novel model and a compensation algorithm for the spatial NU noise and its temperature-dependent variations. The model separates the NU noise into two components: a constant term, which corresponds to a set of NU parameters determining the spatial structure of the noise, and a dynamic term, which scales linearly with the fluctuations of the temperature surrounding the array of microbolometers. We use a black-body radiator and samples of the temperature surrounding the IR array to offline characterize both the constant and the temperature-dependent NU noise parameters. Next, the temperature-dependent variations are estimated online using both a spatially uniform Hammerstein-Wiener estimator and a pixelwise least mean squares (LMS) estimator. We compensate for the NU noise in IR images from two long-wave IR cameras. Results show an excellent NU correction performance and a root mean square error of less than 0.25 ∘C, when the array’s temperature varies by approximately 15 ∘C. PMID:27447637

The NUC and blind pixel eliminating in the DTDI application

NASA Astrophysics Data System (ADS)

Su, Xiao Feng; Chen, Fan Sheng; Pan, Sheng Da; Gong, Xue Yi; Dong, Yu Cui

2013-12-01

AS infrared CMOS Digital TDI (Time Delay and integrate) has a simple structure, excellent performance and flexible operation, it has been used in more and more applications. Because of the limitation of the Production process level, the plane array of the infrared detector has a large NU (non-uniformity) and a certain blind pixel rate. Both of the two will raise the noise and lead to the TDI works not very well. In this paper, for the impact of the system performance, the most important elements are analyzed, which are the NU of the optical system, the NU of the Plane array and the blind pixel in the Plane array. Here a reasonable algorithm which considers the background removal and the linear response model of the infrared detector is used to do the NUC (Non-uniformity correction) process, when the infrared detector array is used as a Digital TDI. In order to eliminate the impact of the blind pixel, the concept of surplus pixel method is introduced in, through the method, the SNR (signal to noise ratio) can be improved and the spatial and temporal resolution will not be changed. Finally we use a MWIR (Medium Ware Infrared) detector to do the experiment and the result proves the effectiveness of the method.

TH-A-BRF-11: Image Intensity Non-Uniformities Between MRI Simulation and Diagnostic MRI

DOE Office of Scientific and Technical Information (OSTI.GOV)

Paulson, E

2014-06-15

Purpose: MRI simulation for MRI-based radiotherapy demands that patients be setup in treatment position, which frequently involves use of alternative radiofrequency (RF) coil configurations to accommodate immobilized patients. However, alternative RF coil geometries may exacerbate image intensity non-uniformities (IINU) beyond those observed in diagnostic MRI, which may challenge image segmentation and registration accuracy as well as confound studies assessing radiotherapy response when MR simulation images are used as baselines for evaluation. The goal of this work was to determine whether differences in IINU exist between MR simulation and diagnostic MR images. Methods: ACR-MRI phantom images were acquired at 3T usingmore » a spin-echo sequence (TE/TR:20/500ms, rBW:62.5kHz, TH/skip:5/5mm). MR simulation images were obtained by wrapping two flexible phased-array RF coils around the phantom. Diagnostic MR images were obtained by placing the phantom into a commercial phased-array head coil. Pre-scan normalization was enabled in both cases. Images were transferred offline and corrected for IINU using the MNI N3 algorithm. Coefficients of variation (CV=σ/μ) were calculated for each slice. Wilcoxon matched-pairs and Mann-Whitney tests compared CV values between original and N3 images and between MR simulation and diagnostic MR images. Results: Significant differences in CV were detected between original and N3 images in both MRI simulation and diagnostic MRI groups (p=0.010, p=0.010). In addition, significant differences in CV were detected between original MR simulation and original and N3 diagnostic MR images (p=0.0256, p=0.0016). However, no significant differences in CV were detected between N3 MR simulation images and original or N3 diagnostic MR images, demonstrating the importance of correcting MR simulation images beyond pre-scan normalization prior to use in radiotherapy. Conclusions: Alternative RF coil configurations used in MRI simulation can Result in significant IINU differences compared to diagnostic MR images. The MNI N3 algorithm reduced MR simulation IINU to levels observed in diagnostic MR images. Funding provided by Advancing a Healthier Wisconsin.« less

Method and algorithm for efficient calibration of compressive hyperspectral imaging system based on a liquid crystal retarder

NASA Astrophysics Data System (ADS)

Shecter, Liat; Oiknine, Yaniv; August, Isaac; Stern, Adrian

2017-09-01

Recently we presented a Compressive Sensing Miniature Ultra-spectral Imaging System (CS-MUSI)1 . This system consists of a single Liquid Crystal (LC) phase retarder as a spectral modulator and a gray scale sensor array to capture a multiplexed signal of the imaged scene. By designing the LC spectral modulator in compliance with the Compressive Sensing (CS) guidelines and applying appropriate algorithms we demonstrated reconstruction of spectral (hyper/ ultra) datacubes from an order of magnitude fewer samples than taken by conventional sensors. The LC modulator is designed to have an effective width of a few tens of micrometers, therefore it is prone to imperfections and spatial nonuniformity. In this work, we present the study of this nonuniformity and present a mathematical algorithm that allows the inference of the spectral transmission over the entire cell area from only a few calibration measurements.

Nonuniform fluids in the grand canonical ensemble

DOE Office of Scientific and Technical Information (OSTI.GOV)

Percus, J.K.

1982-01-01

Nonuniform simple classical fluids are considered quite generally. The grand canonical ensemble is particularly suitable, conceptually, in the leading approximation of local thermodynamics, which figuratively divides the system into approximately uniform spatial subsystems. The procedure is reviewed by which this approach is systematically corrected for slowly varying density profiles, and a model is suggested that carries the correction into the domain of local fluctuations. The latter is assessed for substrate bounded fluids, as well as for two-phase interfaces. The peculiarities of the grand ensemble in a two-phase region stem from the inherent very large number fluctuations. A primitive model showsmore » how these are quenched in the canonical ensemble. This is taken advantage of by applying the Kac-Siegert representation of the van der Waals decomposition with petit canonical corrections, to the two-phase regime.« less

DALMATIAN: An Algorithm for Automatic Cell Detection and Counting in 3D.

PubMed

Shuvaev, Sergey A; Lazutkin, Alexander A; Kedrov, Alexander V; Anokhin, Konstantin V; Enikolopov, Grigori N; Koulakov, Alexei A

2017-01-01

Current 3D imaging methods, including optical projection tomography, light-sheet microscopy, block-face imaging, and serial two photon tomography enable visualization of large samples of biological tissue. Large volumes of data obtained at high resolution require development of automatic image processing techniques, such as algorithms for automatic cell detection or, more generally, point-like object detection. Current approaches to automated cell detection suffer from difficulties originating from detection of particular cell types, cell populations of different brightness, non-uniformly stained, and overlapping cells. In this study, we present a set of algorithms for robust automatic cell detection in 3D. Our algorithms are suitable for, but not limited to, whole brain regions and individual brain sections. We used watershed procedure to split regional maxima representing overlapping cells. We developed a bootstrap Gaussian fit procedure to evaluate the statistical significance of detected cells. We compared cell detection quality of our algorithm and other software using 42 samples, representing 6 staining and imaging techniques. The results provided by our algorithm matched manual expert quantification with signal-to-noise dependent confidence, including samples with cells of different brightness, non-uniformly stained, and overlapping cells for whole brain regions and individual tissue sections. Our algorithm provided the best cell detection quality among tested free and commercial software.

Motion-based nonuniformity correction in DoFP polarimeters

NASA Astrophysics Data System (ADS)

Kumar, Rakesh; Tyo, J. Scott; Ratliff, Bradley M.

2007-09-01

Division of Focal Plane polarimeters (DoFP) operate by integrating an array of micropolarizer elements with a focal plane array. These devices have been investigated for over a decade, and example systems have been built in all regions of the optical spectrum. DoFP devices have the distinct advantage that they are mechanically rugged, inherently temporally synchronized, and optically aligned. They have the concomitant disadvantage that each pixel in the FPA has a different instantaneous field of view (IFOV), meaning that the polarization component measurements that go into estimating the Stokes vector across the image come from four different points in the field. In addition to IFOV errors, microgrid camera systems operating in the LWIR have the additional problem that FPA nonuniformity (NU) noise can be quite severe. The spatial differencing nature of a DoFP system exacerbates the residual NU noise that is remaining after calibration, and is often the largest source of false polarization signatures away from regions where IFOV error dominates. We have recently presented a scene based algorithm that uses frame-to-frame motion to compensate for NU noise in unpolarized IR imagers. In this paper, we have extended that algorithm so that it can be used to compensate for NU noise on a DoFP polarimeter. Furthermore, the additional information provided by the scene motion can be used to significantly reduce the IFOV error. We have found a reduction of IFOV error by a factor of 10 if the scene motion is known exactly. Performance is reduced when the motion must be estimated from the scene, but still shows a marked improvement over static DoFP images.

Advanced Infrared Photodetectors (Materials Review)

DTIC Science & Technology

1993-12-01

Telluride DMS Dilute Magnetic Semiconductor R)V Field of View FPP Focal Plane Processing IR Infrared LPE Liquid Phase Epitaxy LWIR Long Wave Infrared...operation is normal. Photoconductive (PC) cadmium mercury telluride (CdxHgl-xTe. x - 0.167) has a LWIR cutoff at room temperature; however, operation is...reliability, lightweight On-chip clocks and bias circuits An initial use of FPP is nonuniformity correction (NUC) since spatial response nonuniformity is

[Investigation on Mobile Phone Based Thermal Imaging System and Its Preliminary Application].

PubMed

Li, Fufeng; Chen, Feng; Liu, Jing

2015-03-01

The technical structure of a low-cost thermal imaging system (TIM) lunched on a mobile phone was investigated, which consists of a thermal infrared module and mobile phone and application software. The designing strategies and technical factors toward realizing various TIM array performances are interpreted, including sensor cost and Noise Equivalent Temperature Difference (NETD). In the software algorithm, a mechanism for scene-change detection was implemented to optimize the efficiency of non-uniformity correction (NUC). The performance experiments and analysis indicate that the NETD of the system can be smaller than 150 mK when the integration time is larger than 16 frames. Furthermore, a practical application for human temperature monitoring during physical exercise is proposed and interpreted. The measurement results support the feasibility and facility of the system in the medical application.

Restoration of non-uniform exposure motion blurred image

NASA Astrophysics Data System (ADS)

Luo, Yuanhong; Xu, Tingfa; Wang, Ningming; Liu, Feng

2014-11-01

Restoring motion-blurred image is the key technologies in the opto-electronic detection system. The imaging sensors such as CCD and infrared imaging sensor, which are mounted on the motion platforms, quickly move together with the platforms of high speed. As a result, the images become blur. The image degradation will cause great trouble for the succeeding jobs such as objects detection, target recognition and tracking. So the motion-blurred images must be restoration before detecting motion targets in the subsequent images. On the demand of the real weapon task, in order to deal with targets in the complex background, this dissertation uses the new theories in the field of image processing and computer vision to research the new technology of motion deblurring and motion detection. The principle content is as follows: 1) When the prior knowledge about degradation function is unknown, the uniform motion blurred images are restored. At first, the blur parameters, including the motion blur extent and direction of PSF(point spread function), are estimated individually in domain of logarithmic frequency. The direction of PSF is calculated by extracting the central light line of the spectrum, and the extent is computed by minimizing the correction between the fourier spectrum of the blurred image and a detecting function. Moreover, in order to remove the strip in the deblurred image, windows technique is employed in the algorithm, which makes the deblurred image clear. 2) According to the principle of infrared image non-uniform exposure, a new restoration model for infrared blurred images is developed. The fitting of infrared image non-uniform exposure curve is performed by experiment data. The blurred images are restored by the fitting curve.

Enhancement and restoration of non-uniform illuminated Fundus Image of Retina obtained through thin layer of cataract.

PubMed

Mitra, Anirban; Roy, Sudipta; Roy, Somais; Setua, Sanjit Kumar

2018-03-01

Retinal fundus images are extensively used in manually or without human intervention to identify and analyze various diseases. Due to the comprehensive imaging arrangement, there is a large radiance, reflectance and contrast inconsistency within and across images. A novel method is proposed based on the cataract physical model to reduce the generated blurriness of the fundus image at the time of image acquisition through the thin layer of cataract by the fundus camera. After the blurriness reduction the method is proposed the enhancement procedure of the images with an objective on contrast perfection with no preamble of artifacts. Due to the uneven distribution of thickness of the cataract, the cataract surroundings are first predicted in the domain of frequency. Second, the resultant image of first step enhanced by the intensity histogram equalization in the adapted Hue Saturation Intensity (HSI) color image space such as the gamut problem can be avoided. The concluding image with suitable color and disparity is acquired by using the proposed max-min color correction approach. The result indicates that not only the proposed method can more effectively enhanced the non-uniform image of retina obtain through thin layer of cataract, but also the resulting image show appropriate brightness and saturation and maintain complete color space information. The projected enhancement method has been tested on the openly available datasets and the result evaluated with the standard used image enhancement algorithms and the cataract removal method. Results show noticeable development over existing methods. Cataract often prevents the clinician from objectively evaluating fundus feature. Cataract also affect subjective test. Enhancement and restoration of non-uniform illuminated Fundus Image of Retina obtained through thin layer of Cataract has shown here to be potentially beneficial. Copyright © 2018 Elsevier B.V. All rights reserved.

B1- non-uniformity correction of phased-array coils without measuring coil sensitivity.

PubMed

Damen, Frederick C; Cai, Kejia

2018-04-18

Parallel imaging can be used to increase SNR and shorten acquisition times, albeit, at the cost of image non-uniformity. B 1 - non-uniformity correction techniques are confounded by signal that varies not only due to coil induced B 1 - sensitivity variation, but also the object's own intrinsic signal. Herein, we propose a method that makes minimal assumptions and uses only the coil images themselves to produce a single combined B 1 - non-uniformity-corrected complex image with the highest available SNR. A novel background noise classifier is used to select voxels of sufficient quality to avoid the need for regularization. Unique properties of the magnitude and phase were used to reduce the B 1 - sensitivity to two joint additive models for estimation of the B 1 - inhomogeneity. The complementary corruption of the imaged object across the coil images is used to abate individual coil correction imperfections. Results are presented from two anatomical cases: (a) an abdominal image that is challenging in both extreme B 1 - sensitivity and intrinsic tissue signal variation, and (b) a brain image with moderate B 1 - sensitivity and intrinsic tissue signal variation. A new relative Signal-to-Noise Ratio (rSNR) quality metric is proposed to evaluate the performance of the proposed method and the RF receiving coil array. The proposed method has been shown to be robust to imaged objects with widely inhomogeneous intrinsic signal, and resilient to poorly performing coil elements. Copyright © 2018. Published by Elsevier Inc.

Deterministic multidimensional nonuniform gap sampling.

PubMed

Worley, Bradley; Powers, Robert

2015-12-01

Born from empirical observations in nonuniformly sampled multidimensional NMR data relating to gaps between sampled points, the Poisson-gap sampling method has enjoyed widespread use in biomolecular NMR. While the majority of nonuniform sampling schemes are fully randomly drawn from probability densities that vary over a Nyquist grid, the Poisson-gap scheme employs constrained random deviates to minimize the gaps between sampled grid points. We describe a deterministic gap sampling method, based on the average behavior of Poisson-gap sampling, which performs comparably to its random counterpart with the additional benefit of completely deterministic behavior. We also introduce a general algorithm for multidimensional nonuniform sampling based on a gap equation, and apply it to yield a deterministic sampling scheme that combines burst-mode sampling features with those of Poisson-gap schemes. Finally, we derive a relationship between stochastic gap equations and the expectation value of their sampling probability densities. Copyright © 2015 Elsevier Inc. All rights reserved.

A new splitting scheme to the discrete Boltzmann equation for non-ideal gases on non-uniform meshes

NASA Astrophysics Data System (ADS)

Patel, Saumil; Lee, Taehun

2016-12-01

We present a novel numerical procedure for solving the discrete Boltzmann equations (DBE) on non-uniform meshes. Our scheme is based on the Strang splitting method where we seek to investigate two-phase flow applications. In this note, we investigate the onset of parasitic currents which arise in many computational two-phase algorithms. To the best of our knowledge, the results presented in this work show, for the first time, a spectral element discontinuous Galerkin (SEDG) discretization of a discrete Boltzmann equation which successfully eliminates parasitic currents on non-uniform meshes. With the hope that this technique can be used for applications in complex geometries, calculations are performed on non-uniform mesh distributions by using high-order (spectral), body-fitting quadrilateral elements. Validation and verification of our work is carried out by comparing results against the classical 2D Young-Laplace law problem for a static drop.

Noise spatial nonuniformity and the impact of statistical image reconstruction in CT myocardial perfusion imaging.

PubMed

Lauzier, Pascal Theriault; Tang, Jie; Speidel, Michael A; Chen, Guang-Hong

2012-07-01

To achieve high temporal resolution in CT myocardial perfusion imaging (MPI), images are often reconstructed using filtered backprojection (FBP) algorithms from data acquired within a short-scan angular range. However, the variation in the central angle from one time frame to the next in gated short scans has been shown to create detrimental partial scan artifacts when performing quantitative MPI measurements. This study has two main purposes. (1) To demonstrate the existence of a distinct detrimental effect in short-scan FBP, i.e., the introduction of a nonuniform spatial image noise distribution; this nonuniformity can lead to unexpectedly high image noise and streaking artifacts, which may affect CT MPI quantification. (2) To demonstrate that statistical image reconstruction (SIR) algorithms can be a potential solution to address the nonuniform spatial noise distribution problem and can also lead to radiation dose reduction in the context of CT MPI. Projection datasets from a numerically simulated perfusion phantom and an in vivo animal myocardial perfusion CT scan were used in this study. In the numerical phantom, multiple realizations of Poisson noise were added to projection data at each time frame to investigate the spatial distribution of noise. Images from all datasets were reconstructed using both FBP and SIR reconstruction algorithms. To quantify the spatial distribution of noise, the mean and standard deviation were measured in several regions of interest (ROIs) and analyzed across time frames. In the in vivo study, two low-dose scans at tube currents of 25 and 50 mA were reconstructed using FBP and SIR. Quantitative perfusion metrics, namely, the normalized upslope (NUS), myocardial blood volume (MBV), and first moment transit time (FMT), were measured for two ROIs and compared to reference values obtained from a high-dose scan performed at 500 mA. Images reconstructed using FBP showed a highly nonuniform spatial distribution of noise. This spatial nonuniformity led to large fluctuations in the temporal direction. In the numerical phantom study, the level of noise was shown to vary by as much as 87% within a given image, and as much as 110% between different time frames for a ROI far from isocenter. The spatially nonuniform noise pattern was shown to correlate with the source trajectory and the object structure. In contrast, images reconstructed using SIR showed a highly uniform spatial distribution of noise, leading to smaller unexpected noise fluctuations in the temporal direction when a short scan angular range was used. In the numerical phantom study, the noise varied by less than 37% within a given image, and by less than 20% between different time frames. Also, the noise standard deviation in SIR images was on average half of that of FBP images. In the in vivo studies, the deviation observed between quantitative perfusion metrics measured from low-dose scans and high-dose scans was mitigated when SIR was used instead of FBP to reconstruct images. (1) Images reconstructed using FBP suffered from nonuniform spatial noise levels. This nonuniformity is another manifestation of the detrimental effects caused by short-scan reconstruction in CT MPI. (2) Images reconstructed using SIR had a much lower and more uniform noise level and thus can be used as a potential solution to address the FBP nonuniformity. (3) Given the improvement in the accuracy of the perfusion metrics when using SIR, it may be desirable to use a statistical reconstruction framework to perform low-dose dynamic CT MPI.

Noise spatial nonuniformity and the impact of statistical image reconstruction in CT myocardial perfusion imaging

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lauzier, Pascal Theriault; Tang Jie; Speidel, Michael A.

Purpose: To achieve high temporal resolution in CT myocardial perfusion imaging (MPI), images are often reconstructed using filtered backprojection (FBP) algorithms from data acquired within a short-scan angular range. However, the variation in the central angle from one time frame to the next in gated short scans has been shown to create detrimental partial scan artifacts when performing quantitative MPI measurements. This study has two main purposes. (1) To demonstrate the existence of a distinct detrimental effect in short-scan FBP, i.e., the introduction of a nonuniform spatial image noise distribution; this nonuniformity can lead to unexpectedly high image noise andmore » streaking artifacts, which may affect CT MPI quantification. (2) To demonstrate that statistical image reconstruction (SIR) algorithms can be a potential solution to address the nonuniform spatial noise distribution problem and can also lead to radiation dose reduction in the context of CT MPI. Methods: Projection datasets from a numerically simulated perfusion phantom and an in vivo animal myocardial perfusion CT scan were used in this study. In the numerical phantom, multiple realizations of Poisson noise were added to projection data at each time frame to investigate the spatial distribution of noise. Images from all datasets were reconstructed using both FBP and SIR reconstruction algorithms. To quantify the spatial distribution of noise, the mean and standard deviation were measured in several regions of interest (ROIs) and analyzed across time frames. In the in vivo study, two low-dose scans at tube currents of 25 and 50 mA were reconstructed using FBP and SIR. Quantitative perfusion metrics, namely, the normalized upslope (NUS), myocardial blood volume (MBV), and first moment transit time (FMT), were measured for two ROIs and compared to reference values obtained from a high-dose scan performed at 500 mA. Results: Images reconstructed using FBP showed a highly nonuniform spatial distribution of noise. This spatial nonuniformity led to large fluctuations in the temporal direction. In the numerical phantom study, the level of noise was shown to vary by as much as 87% within a given image, and as much as 110% between different time frames for a ROI far from isocenter. The spatially nonuniform noise pattern was shown to correlate with the source trajectory and the object structure. In contrast, images reconstructed using SIR showed a highly uniform spatial distribution of noise, leading to smaller unexpected noise fluctuations in the temporal direction when a short scan angular range was used. In the numerical phantom study, the noise varied by less than 37% within a given image, and by less than 20% between different time frames. Also, the noise standard deviation in SIR images was on average half of that of FBP images. In the in vivo studies, the deviation observed between quantitative perfusion metrics measured from low-dose scans and high-dose scans was mitigated when SIR was used instead of FBP to reconstruct images. Conclusions: (1) Images reconstructed using FBP suffered from nonuniform spatial noise levels. This nonuniformity is another manifestation of the detrimental effects caused by short-scan reconstruction in CT MPI. (2) Images reconstructed using SIR had a much lower and more uniform noise level and thus can be used as a potential solution to address the FBP nonuniformity. (3) Given the improvement in the accuracy of the perfusion metrics when using SIR, it may be desirable to use a statistical reconstruction framework to perform low-dose dynamic CT MPI.« less

Noise spatial nonuniformity and the impact of statistical image reconstruction in CT myocardial perfusion imaging

PubMed Central

Lauzier, Pascal Thériault; Tang, Jie; Speidel, Michael A.; Chen, Guang-Hong

2012-01-01

Purpose: To achieve high temporal resolution in CT myocardial perfusion imaging (MPI), images are often reconstructed using filtered backprojection (FBP) algorithms from data acquired within a short-scan angular range. However, the variation in the central angle from one time frame to the next in gated short scans has been shown to create detrimental partial scan artifacts when performing quantitative MPI measurements. This study has two main purposes. (1) To demonstrate the existence of a distinct detrimental effect in short-scan FBP, i.e., the introduction of a nonuniform spatial image noise distribution; this nonuniformity can lead to unexpectedly high image noise and streaking artifacts, which may affect CT MPI quantification. (2) To demonstrate that statistical image reconstruction (SIR) algorithms can be a potential solution to address the nonuniform spatial noise distribution problem and can also lead to radiation dose reduction in the context of CT MPI. Methods: Projection datasets from a numerically simulated perfusion phantom and an in vivo animal myocardial perfusion CT scan were used in this study. In the numerical phantom, multiple realizations of Poisson noise were added to projection data at each time frame to investigate the spatial distribution of noise. Images from all datasets were reconstructed using both FBP and SIR reconstruction algorithms. To quantify the spatial distribution of noise, the mean and standard deviation were measured in several regions of interest (ROIs) and analyzed across time frames. In the in vivo study, two low-dose scans at tube currents of 25 and 50 mA were reconstructed using FBP and SIR. Quantitative perfusion metrics, namely, the normalized upslope (NUS), myocardial blood volume (MBV), and first moment transit time (FMT), were measured for two ROIs and compared to reference values obtained from a high-dose scan performed at 500 mA. Results: Images reconstructed using FBP showed a highly nonuniform spatial distribution of noise. This spatial nonuniformity led to large fluctuations in the temporal direction. In the numerical phantom study, the level of noise was shown to vary by as much as 87% within a given image, and as much as 110% between different time frames for a ROI far from isocenter. The spatially nonuniform noise pattern was shown to correlate with the source trajectory and the object structure. In contrast, images reconstructed using SIR showed a highly uniform spatial distribution of noise, leading to smaller unexpected noise fluctuations in the temporal direction when a short scan angular range was used. In the numerical phantom study, the noise varied by less than 37% within a given image, and by less than 20% between different time frames. Also, the noise standard deviation in SIR images was on average half of that of FBP images. In the in vivo studies, the deviation observed between quantitative perfusion metrics measured from low-dose scans and high-dose scans was mitigated when SIR was used instead of FBP to reconstruct images. Conclusions: (1) Images reconstructed using FBP suffered from nonuniform spatial noise levels. This nonuniformity is another manifestation of the detrimental effects caused by short-scan reconstruction in CT MPI. (2) Images reconstructed using SIR had a much lower and more uniform noise level and thus can be used as a potential solution to address the FBP nonuniformity. (3) Given the improvement in the accuracy of the perfusion metrics when using SIR, it may be desirable to use a statistical reconstruction framework to perform low-dose dynamic CT MPI. PMID:22830741

Shutterless non-uniformity correction for the long-term stability of an uncooled long-wave infrared camera

NASA Astrophysics Data System (ADS)

Liu, Chengwei; Sui, Xiubao; Gu, Guohua; Chen, Qian

2018-02-01

For the uncooled long-wave infrared (LWIR) camera, the infrared (IR) irradiation the focal plane array (FPA) receives is a crucial factor that affects the image quality. Ambient temperature fluctuation as well as system power consumption can result in changes of FPA temperature and radiation characteristics inside the IR camera; these will further degrade the imaging performance. In this paper, we present a novel shutterless non-uniformity correction method to compensate for non-uniformity derived from the variation of ambient temperature. Our method combines a calibration-based method and the properties of a scene-based method to obtain correction parameters at different ambient temperature conditions, so that the IR camera performance can be less influenced by ambient temperature fluctuation or system power consumption. The calibration process is carried out in a temperature chamber with slowly changing ambient temperature and a black body as uniform radiation source. Enough uniform images are captured and the gain coefficients are calculated during this period. Then in practical application, the offset parameters are calculated via the least squares method based on the gain coefficients, the captured uniform images and the actual scene. Thus we can get a corrected output through the gain coefficients and offset parameters. The performance of our proposed method is evaluated on realistic IR images and compared with two existing methods. The images we used in experiments are obtained by a 384× 288 pixels uncooled LWIR camera. Results show that our proposed method can adaptively update correction parameters as the actual target scene changes and is more stable to temperature fluctuation than the other two methods.

Phases and stability of non-uniform black strings

NASA Astrophysics Data System (ADS)

Emparan, Roberto; Luna, Raimon; Martínez, Marina; Suzuki, Ryotaku; Tanabe, Kentaro

2018-05-01

We construct solutions of non-uniform black strings in dimensions from D ≈ 9 all the way up to D = ∞, and investigate their thermodynamics and dynamical stability. Our approach employs the large- D perturbative expansion beyond the leading order, including corrections up to 1 /D 4. Combining both analytical techniques and relatively simple numerical solution of ODEs, we map out the ranges of parameters in which non-uniform black strings exist in each dimension and compute their thermodynamics and quasinormal modes with accuracy. We establish with very good precision the existence of Sorkin's critical dimension and we prove that not only the thermodynamic stability, but also the dynamic stability of the solutions changes at it.

A simple algorithm to improve the performance of the WENO scheme on non-uniform grids

NASA Astrophysics Data System (ADS)

Huang, Wen-Feng; Ren, Yu-Xin; Jiang, Xiong

2018-02-01

This paper presents a simple approach for improving the performance of the weighted essentially non-oscillatory (WENO) finite volume scheme on non-uniform grids. This technique relies on the reformulation of the fifth-order WENO-JS (WENO scheme presented by Jiang and Shu in J. Comput. Phys. 126:202-228, 1995) scheme designed on uniform grids in terms of one cell-averaged value and its left and/or right interfacial values of the dependent variable. The effect of grid non-uniformity is taken into consideration by a proper interpolation of the interfacial values. On non-uniform grids, the proposed scheme is much more accurate than the original WENO-JS scheme, which was designed for uniform grids. When the grid is uniform, the resulting scheme reduces to the original WENO-JS scheme. In the meantime, the proposed scheme is computationally much more efficient than the fifth-order WENO scheme designed specifically for the non-uniform grids. A number of numerical test cases are simulated to verify the performance of the present scheme.

ROC evaluation of SPECT myocardial lesion detectability with and without single iteration non-uniform Chang attenuation compensation using an anthropomorphic female phantom

NASA Astrophysics Data System (ADS)

Jang, Sunyoung; Jaszczak, R. J.; Tsui, B. M. W.; Metz, C. E.; Gilland, D. R.; Turkington, T. G.; Coleman, R. E.

1998-08-01

The purpose of this work was to evaluate lesion detectability with and without nonuniform attenuation compensation (AC) in myocardial perfusion SPECT imaging in women using an anthropomorphic phantom and receiver operating characteristics (ROC) methodology. Breast attenuation causes artifacts in reconstructed images and may increase the difficulty of diagnosis of myocardial perfusion imaging in women. The null hypothesis tested using the ROC study was that nonuniform AC does not change the lesion detectability in myocardial perfusion SPECT imaging in women. The authors used a filtered backprojection (FBP) reconstruction algorithm and Chang's (1978) single iteration method for AC. In conclusion, with the authors' proposed myocardial defect model nuclear medicine physicians demonstrated no significant difference for the detection of the anterior wall defect; however, a greater accuracy for the detection of the inferior wall defect was observed without nonuniform AC than with it (P-value=0.0034). Medical physicists did not demonstrate any statistically significant difference in defect detection accuracy with or without nonuniform AC in the female phantom.

WE-G-18C-05: Characterization of Cross-Vendor, Cross-Field Strength MR Image Intensity Variations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Paulson, E; Prah, D

2014-06-15

Purpose: Variations in MR image intensity and image intensity nonuniformity (IINU) can challenge the accuracy of intensity-based image segmentation and registration algorithms commonly applied in radiotherapy. The goal of this work was to characterize MR image intensity variations across scanner vendors and field strengths commonly used in radiotherapy. Methods: ACR-MRI phantom images were acquired at 1.5T and 3.0T on GE (450w and 750, 23.1), Siemens (Espree and Verio, VB17B), and Philips (Ingenia, 4.1.3) scanners using commercial spin-echo sequences with matched parameters (TE/TR: 20/500 ms, rBW: 62.5 kHz, TH/skip: 5/5mm). Two radiofrequency (RF) coil combinations were used for each scanner: bodymore » coil alone, and combined body and phased-array head coils. Vendorspecific B1- corrections (PURE/Pre-Scan Normalize/CLEAR) were applied in all head coil cases. Images were transferred offline, corrected for IINU using the MNI N3 algorithm, and normalized. Coefficients of variation (CV=σ/μ) and peak image uniformity (PIU = 1−(Smax−Smin)/(Smax+Smin)) estimates were calculated for one homogeneous phantom slice. Kruskal-Wallis and Wilcoxon matched-pairs tests compared mean MR signal intensities and differences between original and N3 image CV and PIU. Results: Wide variations in both MR image intensity and IINU were observed across scanner vendors, field strengths, and RF coil configurations. Applying the MNI N3 correction for IINU resulted in significant improvements in both CV and PIU (p=0.0115, p=0.0235). However, wide variations in overall image intensity persisted, requiring image normalization to improve consistency across vendors, field strengths, and RF coils. These results indicate that B1- correction routines alone may be insufficient in compensating for IINU and image scaling, warranting additional corrections prior to use of MR images in radiotherapy. Conclusions: MR image intensities and IINU vary as a function of scanner vendor, field strength, and RF coil configuration. A two-step strategy consisting of MNI N3 correction followed by normalization was required to improve MR image consistency. Funding provided by Advancing a Healthier Wisconsin.« less

Scene-based nonuniformity correction for airborne point target detection systems.

PubMed

Zhou, Dabiao; Wang, Dejiang; Huo, Lijun; Liu, Rang; Jia, Ping

2017-06-26

Images acquired by airborne infrared search and track (IRST) systems are often characterized by nonuniform noise. In this paper, a scene-based nonuniformity correction method for infrared focal-plane arrays (FPAs) is proposed based on the constant statistics of the received radiation ratios of adjacent pixels. The gain of each pixel is computed recursively based on the ratios between adjacent pixels, which are estimated through a median operation. Then, an elaborate mathematical model describing the error propagation, derived from random noise and the recursive calculation procedure, is established. The proposed method maintains the characteristics of traditional methods in calibrating the whole electro-optics chain, in compensating for temporal drifts, and in not preserving the radiometric accuracy of the system. Moreover, the proposed method is robust since the frame number is the only variant, and is suitable for real-time applications owing to its low computational complexity and simplicity of implementation. The experimental results, on different scenes from a proof-of-concept point target detection system with a long-wave Sofradir FPA, demonstrate the compelling performance of the proposed method.

Automatic correction of intensity nonuniformity from sparseness of gradient distribution in medical images.

PubMed

Zheng, Yuanjie; Grossman, Murray; Awate, Suyash P; Gee, James C

2009-01-01

We propose to use the sparseness property of the gradient probability distribution to estimate the intensity nonuniformity in medical images, resulting in two novel automatic methods: a non-parametric method and a parametric method. Our methods are easy to implement because they both solve an iteratively re-weighted least squares problem. They are remarkably accurate as shown by our experiments on images of different imaged objects and from different imaging modalities.

Automatic Correction of Intensity Nonuniformity from Sparseness of Gradient Distribution in Medical Images

PubMed Central

Zheng, Yuanjie; Grossman, Murray; Awate, Suyash P.; Gee, James C.

2013-01-01

We propose to use the sparseness property of the gradient probability distribution to estimate the intensity nonuniformity in medical images, resulting in two novel automatic methods: a non-parametric method and a parametric method. Our methods are easy to implement because they both solve an iteratively re-weighted least squares problem. They are remarkably accurate as shown by our experiments on images of different imaged objects and from different imaging modalities. PMID:20426191

Intelligent error correction method applied on an active pixel sensor based star tracker

NASA Astrophysics Data System (ADS)

Schmidt, Uwe

2005-10-01

Star trackers are opto-electronic sensors used on-board of satellites for the autonomous inertial attitude determination. During the last years star trackers became more and more important in the field of the attitude and orbit control system (AOCS) sensors. High performance star trackers are based up today on charge coupled device (CCD) optical camera heads. The active pixel sensor (APS) technology, introduced in the early 90-ties, allows now the beneficial replacement of CCD detectors by APS detectors with respect to performance, reliability, power, mass and cost. The company's heritage in star tracker design started in the early 80-ties with the launch of the worldwide first fully autonomous star tracker system ASTRO1 to the Russian MIR space station. Jena-Optronik recently developed an active pixel sensor based autonomous star tracker "ASTRO APS" as successor of the CCD based star tracker product series ASTRO1, ASTRO5, ASTRO10 and ASTRO15. Key features of the APS detector technology are, a true xy-address random access, the multiple windowing read out and the on-chip signal processing including the analogue to digital conversion. These features can be used for robust star tracking at high slew rates and under worse conditions like stray light and solar flare induced single event upsets. A special algorithm have been developed to manage the typical APS detector error contributors like fixed pattern noise (FPN), dark signal non-uniformity (DSNU) and white spots. The algorithm works fully autonomous and adapts to e.g. increasing DSNU and up-coming white spots automatically without ground maintenance or re-calibration. In contrast to conventional correction methods the described algorithm does not need calibration data memory like full image sized calibration data sets. The application of the presented algorithm managing the typical APS detector error contributors is a key element for the design of star trackers for long term satellite applications like geostationary telecom platforms.

HYDICE postflight data processing

NASA Astrophysics Data System (ADS)

Aldrich, William S.; Kappus, Mary E.; Resmini, Ronald G.; Mitchell, Peter A.

1996-06-01

The hyperspectral digital imagery collection experiment (HYDICE) sensor records instrument counts for scene data, in-flight spectral and radiometric calibration sequences, and dark current levels onto an AMPEX DCRsi data tape. Following flight, the HYDICE ground data processing subsystem (GDPS) transforms selected scene data from digital numbers (DN) to calibrated radiance levels at the sensor aperture. This processing includes: dark current correction, spectral and radiometric calibration, conversion to radiance, and replacement of bad detector elements. A description of the algorithms for post-flight data processing is presented. A brief analysis of the original radiometric calibration procedure is given, along with a description of the development of the modified procedure currently used. Example data collected during the 1995 flight season, but uncorrected and processed, are shown to demonstrate the removal of apparent sensor artifacts (e.g., non-uniformities in detector response over the array) as a result of this transformation.

An Energy- and Charge-conserving, Implicit, Electrostatic Particle-in-Cell Algorithm in curvilinear geometry

NASA Astrophysics Data System (ADS)

Chen, G.; Chacón, L.; Barnes, D. C.

2012-03-01

A recent proof-of-principle study proposes an energy- and charge-conserving, fully implicit particle-in-cell algorithm in one dimension [1], which is able to use timesteps comparable to the dynamical timescale of interest. Here, we generalize the method to employ non-uniform meshes via a curvilinear map. The key enabling technology is a hybrid particle pusher [2], with particle positions updated in logical space and particle velocities updated in physical space. The self-adaptive, charge-conserving particle mover of Ref. [1] is extended to the non-uniform mesh case. The fully implicit implementation, using a Jacobian-free Newton-Krylov iterative solver, remains exactly charge- and energy-conserving. The extension of the formulation to multiple dimensions will be discussed. We present numerical experiments of 1D electrostatic, long-timescale ion-acoustic wave and ion-acoustic shock wave simulations, demonstrating that charge and energy are conserved to round-off for arbitrary mesh non-uniformity, and that the total momentum remains well conserved.[4pt] [1] Chen, Chac'on, Barnes, J. Comput. Phys. 230 (2011). [0pt] [2] Camporeale and Delzanno, Bull. Am. Phys. Soc. 56(6) (2011); Wang, et al., J. Plasma Physics, 61 (1999).

Canceling the momentum in a phase-shifting algorithm to eliminate spatially uniform errors.

PubMed

Hibino, Kenichi; Kim, Yangjin

2016-08-10

In phase-shifting interferometry, phase modulation nonlinearity causes both spatially uniform and nonuniform errors in the measured phase. Conventional linear-detuning error-compensating algorithms only eliminate the spatially variable error component. The uniform error is proportional to the inertial momentum of the data-sampling weight of a phase-shifting algorithm. This paper proposes a design approach to cancel the momentum by using characteristic polynomials in the Z-transform space and shows that an arbitrary M-frame algorithm can be modified to a new (M+2)-frame algorithm that acquires new symmetry to eliminate the uniform error.

Lung vasculature imaging using speckle variance optical coherence tomography

NASA Astrophysics Data System (ADS)

Cua, Michelle; Lee, Anthony M. D.; Lane, Pierre M.; McWilliams, Annette; Shaipanich, Tawimas; MacAulay, Calum E.; Yang, Victor X. D.; Lam, Stephen

2012-02-01

Architectural changes in and remodeling of the bronchial and pulmonary vasculature are important pathways in diseases such as asthma, chronic obstructive pulmonary disease (COPD), and lung cancer. However, there is a lack of methods that can find and examine small bronchial vasculature in vivo. Structural lung airway imaging using optical coherence tomography (OCT) has previously been shown to be of great utility in examining bronchial lesions during lung cancer screening under the guidance of autofluorescence bronchoscopy. Using a fiber optic endoscopic OCT probe, we acquire OCT images from in vivo human subjects. The side-looking, circumferentially-scanning probe is inserted down the instrument channel of a standard bronchoscope and manually guided to the imaging location. Multiple images are collected with the probe spinning proximally at 100Hz. Due to friction, the distal end of the probe does not spin perfectly synchronous with the proximal end, resulting in non-uniform rotational distortion (NURD) of the images. First, we apply a correction algorithm to remove NURD. We then use a speckle variance algorithm to identify vasculature. The initial data show a vascaulture density in small human airways similar to what would be expected.

Minimum nonuniform graph partitioning with unrelated weights

NASA Astrophysics Data System (ADS)

Makarychev, K. S.; Makarychev, Yu S.

2017-12-01

We give a bi-criteria approximation algorithm for the Minimum Nonuniform Graph Partitioning problem, recently introduced by Krauthgamer, Naor, Schwartz and Talwar. In this problem, we are given a graph G=(V,E) and k numbers ρ_1,\\dots, ρ_k. The goal is to partition V into k disjoint sets (bins) P_1,\\dots, P_k satisfying \\vert P_i\\vert≤ ρi \\vert V\\vert for all i, so as to minimize the number of edges cut by the partition. Our bi-criteria algorithm gives an O(\\sqrt{log \\vert V\\vert log k}) approximation for the objective function in general graphs and an O(1) approximation in graphs excluding a fixed minor. The approximate solution satisfies the relaxed capacity constraints \\vert P_i\\vert ≤ (5+ \\varepsilon)ρi \\vert V\\vert. This algorithm is an improvement upon the O(log \\vert V\\vert)-approximation algorithm by Krauthgamer, Naor, Schwartz and Talwar. We extend our results to the case of 'unrelated weights' and to the case of 'unrelated d-dimensional weights'. A preliminary version of this work was presented at the 41st International Colloquium on Automata, Languages and Programming (ICALP 2014). Bibliography: 7 titles.

Coarsening of three-dimensional structured and unstructured grids for subsurface flow

NASA Astrophysics Data System (ADS)

Aarnes, Jørg Espen; Hauge, Vera Louise; Efendiev, Yalchin

2007-11-01

We present a generic, semi-automated algorithm for generating non-uniform coarse grids for modeling subsurface flow. The method is applicable to arbitrary grids and does not impose smoothness constraints on the coarse grid. One therefore avoids conventional smoothing procedures that are commonly used to ensure that the grids obtained with standard coarsening procedures are not too rough. The coarsening algorithm is very simple and essentially involves only two parameters that specify the level of coarsening. Consequently the algorithm allows the user to specify the simulation grid dynamically to fit available computer resources, and, e.g., use the original geomodel as input for flow simulations. This is of great importance since coarse grid-generation is normally the most time-consuming part of an upscaling phase, and therefore the main obstacle that has prevented simulation workflows with user-defined resolution. We apply the coarsening algorithm to a series of two-phase flow problems on both structured (Cartesian) and unstructured grids. The numerical results demonstrate that one consistently obtains significantly more accurate results using the proposed non-uniform coarsening strategy than with corresponding uniform coarse grids with roughly the same number of cells.

Evaluation of the effects of patient arm attenuation in SPECT cardiac perfusion imaging

NASA Astrophysics Data System (ADS)

Luo, Dershan; King, M. A.; Pan, Tin-Su; Xia, Weishi

1996-12-01

It was hypothesized that the use of attenuation correction could compensate for degradation in the uniformity of apparent localization of imaging agents seen in cardiac walls when patients are imaged with arms at their sides. Noise-free simulations of the digital MCAT phantom were employed to investigate this hypothesis. Four variations in camera size and collimation scheme were investigated. We observed that: 1) without attenuation correction, the arms had little additional influences on the uniformity of the heart for 180/spl deg/ reconstructions and caused a small increase in nonuniformity for 360/spl deg/ reconstructions, where the impact of both arms was included; 2) change in patient size had more of an impact on count uniformity than the presence of the arms, either with or without attenuation correction; 3) for a low number of iterations and large patient size, slightly better uniformity was obtained from parallel emission data than from fan-beam emission data, independent of whether parallel or fan-beam transmission data was used to reconstruct the attenuation maps; and 4) for all camera configurations, uniformity was improved with attenuation correction and, given sufficient number of iterations, it was compatible among different imaging geometry combinations. Thus, iterative algorithms can compensate for the additional attenuation imposed by larger patients or having the arms on the sides. When the arms are at the sides of the patient, however, a larger radius of rotation may be required, resulting in decreased spatial resolution.

Evaluation of the effects of patient arm attenuation in SPECT cardiac perfusion imaging

DOE Office of Scientific and Technical Information (OSTI.GOV)

Luo, D.; King, M.A.; Pan, T.S.

1996-12-01

It was hypothesized that the use of attenuation correction could compensate for degradation in the uniformity of apparent localization of imaging agents seen in cardiac walls when patients are imaged with arms at their sides. Noise-free simulations of the digital MCAT phantom were employed to investigate this hypothesis. Four variations in camera size and collimation scheme were investigated. The authors observed that: (1) without attenuation correction, the arms had little additional influences on the uniformity of the heart for 180{degree} reconstructions and caused a small increase in nonuniformity for 360{degree} reconstructions, where the impact of both arms was included; (2)more » change in patient size had more of an impact on count uniformity than the presence of the arms, either with or without attenuation correction; (3) for a low number of iterations and large patient size, slightly better uniformity was obtained from parallel emission data than from fan-beam emission data, independent of whether parallel or fan-beam transmission data was used to reconstruct the attenuation maps; and (4) for all camera configurations, uniformity was improved with attenuation correction and, given sufficient number of iterations, it was compatible among different imaging geometry combinations. Thus, iterative algorithms can compensate for the additional attenuation imposed by larger patients or having the arms on the sides. When the arms are at the sides of the patient, however, a larger radius of rotation may be required, resulting in decreased spatial resolution.« less

SeaWinds Scatterometer Wind Vector Retrievals Within Hurricanes Using AMSR and NEXRAD to Perform Corrections for Precipitation Effects: Comparison of AMSR and NEXRAD Retrievals of Rain

NASA Technical Reports Server (NTRS)

Weissman, David E.; Hristova-Veleva, Svetla; Callahan, Philip

2006-01-01

The opportunity provided by satellite scatterometers to measure ocean surface winds in strong storms and hurricanes is diminished by the errors in the received backscatter (SIGMA-0) caused by the attenuation, scattering and surface roughening produced by heavy rain. Providing a good rain correction is a very challenging problem, particularly at Ku band (13.4 GHz) where rain effects are strong. Corrections to the scatterometer measurements of ocean surface winds can be pursued with either of two different methods: empirical or physical modeling. The latter method is employed in this study because of the availability of near simultaneous and collocated measurements provided by the MIDORI-II suite of instruments. The AMSR was designed to measure atmospheric water-related parameters on a spatial scale comparable to the SeaWinds scatterometer. These quantities can be converted into volumetric attenuation and scattering at the Ku-band frequency of SeaWinds. Optimal estimates of the volume backscatter and attenuation require a knowledge of the three dimensional distribution of reflectivity on a scale comparable to that of the precipitation. Studies selected near the US coastline enable the much higher resolution NEXRAD reflectivity measurements evaluate the AMSR estimates. We are also conducting research into the effects of different beam geometries and nonuniform beamfilling of precipitation within the field-of-view of the AMSR and the scatterometer. Furthermore, both AMSR and NEXRAD estimates of atmospheric correction can be used to produce corrected SIGMA-0s, which are then input to the JPL wind retrieval algorithm.

Low-dimensional approximation searching strategy for transfer entropy from non-uniform embedding

PubMed Central

2018-01-01

Transfer entropy from non-uniform embedding is a popular tool for the inference of causal relationships among dynamical subsystems. In this study we present an approach that makes use of low-dimensional conditional mutual information quantities to decompose the original high-dimensional conditional mutual information in the searching procedure of non-uniform embedding for significant variables at different lags. We perform a series of simulation experiments to assess the sensitivity and specificity of our proposed method to demonstrate its advantage compared to previous algorithms. The results provide concrete evidence that low-dimensional approximations can help to improve the statistical accuracy of transfer entropy in multivariate causality analysis and yield a better performance over other methods. The proposed method is especially efficient as the data length grows. PMID:29547669

Characterization and Processing of Non-Uniformities in Back-Illuminated CCDs

NASA Astrophysics Data System (ADS)

Lemm, Alia D.; Della-Rose, Devin J.; Maddocks, Sally

2018-01-01

In astronomical photometry, Charged Coupled Device (CCD) detectors are used to achieve high precision photometry and must be properly calibrated to correct for noise and pixel non-uniformities. Uncalibrated images may contain bias offset, dark current, bias structure and uneven illumination. In addition, standard data reduction is often not sufficient to “normalize” imagery to single-digit millimagnitude (mmag) precision. We are investigating an apparent non-uniformity, or interference pattern, in a back-illuminated sensor, the Alta U-47, attached to a DFM Engineering 41-cm Ritchey-Chrétien f/8 telescope. Based on the amplitude of this effect, we estimate that instrument magnitude peak-to-valley deviations of 50 mmag or more may result. Our initial testing strongly suggests that reflected skylight from high pressure sodium city lights may be the cause of this interference pattern. Our research goals are twofold: to fully characterize this non-uniformity and to determine the best method to remove this interference pattern from our reduced CCD images.

LWIR pupil imaging and longer-term calibration stability

NASA Astrophysics Data System (ADS)

LeVan, Paul D.; Sakoglu, Ünal

2016-09-01

A previous paper described LWIR pupil imaging, and an improved understanding of the behavior of this type of sensor for which the high-sensitivity focal plane array (FPA) operated at higher flux levels includes a reversal in signal integration polarity. We have since considered a candidate methodology for efficient, long-term calibration stability that exploits the following two properties of pupil imaging: (1) a fixed pupil position on the FPA, and (2) signal levels from the scene imposed on significant but fixed LWIR background levels. These two properties serve to keep each pixel operating over a limited dynamic range that corresponds to its location in the pupil and to the signal levels generated at this location by the lower and upper calibration flux levels. Exploiting this property for which each pixel of the Pupil Imager operates over its limited dynamic range, the signal polarity reversal between low and high flux pixels, which occurs for a circular region of pixels near the upper edges of the pupil illumination profile, can be rectified to unipolar integration with a two-level non-uniformity correction (NUC). Images corrected real-time with standard non-uniformity correction (NUC) techniques, are still subject to longer-term drifts in pixel offsets between recalibrations. Long-term calibration stability might then be achieved using either a scene-based non-uniformity correction approach, or with periodic repointing for off-source background estimation and subtraction. Either approach requires dithering of the field of view, by sub-pixel amounts for the first method, or by large off-source motions outside the 0.38 milliradian FOV for the latter method. We report on the results of investigations along both these lines.

Propeller speed and phase sensor

NASA Technical Reports Server (NTRS)

Collopy, Paul D. (Inventor); Bennett, George W. (Inventor)

1992-01-01

A speed and phase sensor counterrotates aircraft propellers. A toothed wheel is attached to each propeller, and the teeth trigger a sensor as they pass, producing a sequence of signals. From the sequence of signals, rotational speed of each propeller is computer based on time intervals between successive signals. The speed can be computed several times during one revolution, thus giving speed information which is highly up-to-date. Given that spacing between teeth may not be uniform, the signals produced may be nonuniform in time. Error coefficients are derived to correct for nonuniformities in the resulting signals, thus allowing accurate speed to be computed despite the spacing nonuniformities. Phase can be viewed as the relative rotational position of one propeller with respect to the other, but measured at a fixed time. Phase is computed from the signals.

Radar Imaging of Non-Uniformly Rotating Targets via a Novel Approach for Multi-Component AM-FM Signal Parameter Estimation

PubMed Central

Wang, Yong

2015-01-01

A novel radar imaging approach for non-uniformly rotating targets is proposed in this study. It is assumed that the maneuverability of the non-cooperative target is severe, and the received signal in a range cell can be modeled as multi-component amplitude-modulated and frequency-modulated (AM-FM) signals after motion compensation. Then, the modified version of Chirplet decomposition (MCD) based on the integrated high order ambiguity function (IHAF) is presented for the parameter estimation of AM-FM signals, and the corresponding high quality instantaneous ISAR images can be obtained from the estimated parameters. Compared with the MCD algorithm based on the generalized cubic phase function (GCPF) in the authors’ previous paper, the novel algorithm presented in this paper is more accurate and efficient, and the results with simulated and real data demonstrate the superiority of the proposed method. PMID:25806870

Observer-based output feedback control of networked control systems with non-uniform sampling and time-varying delay

NASA Astrophysics Data System (ADS)

Meng, Su; Chen, Jie; Sun, Jian

2017-10-01

This paper investigates the problem of observer-based output feedback control for networked control systems with non-uniform sampling and time-varying transmission delay. The sampling intervals are assumed to vary within a given interval. The transmission delay belongs to a known interval. A discrete-time model is first established, which contains time-varying delay and norm-bounded uncertainties coming from non-uniform sampling intervals. It is then converted to an interconnection of two subsystems in which the forward channel is delay-free. The scaled small gain theorem is used to derive the stability condition for the closed-loop system. Moreover, the observer-based output feedback controller design method is proposed by utilising a modified cone complementary linearisation algorithm. Finally, numerical examples illustrate the validity and superiority of the proposed method.

SPECT reconstruction with nonuniform attenuation from highly under-sampled projection data

NASA Astrophysics Data System (ADS)

Li, Cuifen; Wen, Junhai; Zhang, Kangping; Shi, Donghao; Dong, Haixiang; Li, Wenxiao; Liang, Zhengrong

2012-03-01

Single photon emission computed tomography (SPECT) is an important nuclear medicine imaging technique and has been using in clinical diagnoses. The SPECT image can reflect not only organizational structure but also functional activities of human body, therefore diseases can be found much earlier. In SPECT, the reconstruction is based on the measurement of gamma photons emitted by the radiotracer. The number of gamma photons detected is proportional to the dose of radiopharmaceutical, but the dose is limited because of patient safety. There is an upper limit in the number of gamma photons that can be detected per unit time, so it takes a long time to acquire SPECT projection data. Sometimes we just can obtain highly under-sampled projection data because of the limit of the scanning time or imaging hardware. How to reconstruct an image using highly under-sampled projection data is an interesting problem. One method is to minimize the total variation (TV) of the reconstructed image during the iterative reconstruction. In this work, we developed an OSEM-TV SPECT reconstruction algorithm, which could reconstruct the image from highly under-sampled projection data with non-uniform attenuation. Simulation results demonstrate that the OSEM-TV algorithm performs well in SPECT reconstruction with non-uniform attenuation.

Integrated segmentation of cellular structures

NASA Astrophysics Data System (ADS)

Ajemba, Peter; Al-Kofahi, Yousef; Scott, Richard; Donovan, Michael; Fernandez, Gerardo

2011-03-01

Automatic segmentation of cellular structures is an essential step in image cytology and histology. Despite substantial progress, better automation and improvements in accuracy and adaptability to novel applications are needed. In applications utilizing multi-channel immuno-fluorescence images, challenges include misclassification of epithelial and stromal nuclei, irregular nuclei and cytoplasm boundaries, and over and under-segmentation of clustered nuclei. Variations in image acquisition conditions and artifacts from nuclei and cytoplasm images often confound existing algorithms in practice. In this paper, we present a robust and accurate algorithm for jointly segmenting cell nuclei and cytoplasm using a combination of ideas to reduce the aforementioned problems. First, an adaptive process that includes top-hat filtering, Eigenvalues-of-Hessian blob detection and distance transforms is used to estimate the inverse illumination field and correct for intensity non-uniformity in the nuclei channel. Next, a minimum-error-thresholding based binarization process and seed-detection combining Laplacian-of-Gaussian filtering constrained by a distance-map-based scale selection is used to identify candidate seeds for nuclei segmentation. The initial segmentation using a local maximum clustering algorithm is refined using a minimum-error-thresholding technique. Final refinements include an artifact removal process specifically targeted at lumens and other problematic structures and a systemic decision process to reclassify nuclei objects near the cytoplasm boundary as epithelial or stromal. Segmentation results were evaluated using 48 realistic phantom images with known ground-truth. The overall segmentation accuracy exceeds 94%. The algorithm was further tested on 981 images of actual prostate cancer tissue. The artifact removal process worked in 90% of cases. The algorithm has now been deployed in a high-volume histology analysis application.

Improving RNA-Seq expression estimates by correcting for fragment bias

PubMed Central

2011-01-01

The biochemistry of RNA-Seq library preparation results in cDNA fragments that are not uniformly distributed within the transcripts they represent. This non-uniformity must be accounted for when estimating expression levels, and we show how to perform the needed corrections using a likelihood based approach. We find improvements in expression estimates as measured by correlation with independently performed qRT-PCR and show that correction of bias leads to improved replicability of results across libraries and sequencing technologies. PMID:21410973

Region of Interest Imaging for a General Trajectory with the Rebinned BPF Algorithm*

PubMed Central

Bian, Junguo; Xia, Dan; Sidky, Emil Y; Pan, Xiaochuan

2010-01-01

The back-projection-filtration (BPF) algorithm has been applied to image reconstruction for cone-beam configurations with general source trajectories. The BPF algorithm can reconstruct 3-D region-of-interest (ROI) images from data containing truncations. However, like many other existing algorithms for cone-beam configurations, the BPF algorithm involves a back-projection with a spatially varying weighting factor, which can result in the non-uniform noise levels in reconstructed images and increased computation time. In this work, we propose a BPF algorithm to eliminate the spatially varying weighting factor by using a rebinned geometry for a general scanning trajectory. This proposed BPF algorithm has an improved noise property, while retaining the advantages of the original BPF algorithm such as minimum data requirement. PMID:20617122

Region of Interest Imaging for a General Trajectory with the Rebinned BPF Algorithm.

PubMed

Bian, Junguo; Xia, Dan; Sidky, Emil Y; Pan, Xiaochuan

2010-02-01

The back-projection-filtration (BPF) algorithm has been applied to image reconstruction for cone-beam configurations with general source trajectories. The BPF algorithm can reconstruct 3-D region-of-interest (ROI) images from data containing truncations. However, like many other existing algorithms for cone-beam configurations, the BPF algorithm involves a back-projection with a spatially varying weighting factor, which can result in the non-uniform noise levels in reconstructed images and increased computation time. In this work, we propose a BPF algorithm to eliminate the spatially varying weighting factor by using a rebinned geometry for a general scanning trajectory. This proposed BPF algorithm has an improved noise property, while retaining the advantages of the original BPF algorithm such as minimum data requirement.

A NONUNIFORM FAST-HANKEL TRANSFORM (NUFHT) ALGORITHM. (R825225)

EPA Science Inventory

The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

Experimental verification of gain drop due to general ion recombination for a carbon-ion pencil beam

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tansho, Ryohei, E-mail: r-tansho@nirs.go.jp; Furukawa, Takuji; Hara, Yousuke

Purpose: Accurate dose measurement in radiotherapy is critically dependent on correction for gain drop, which is the difference of the measured current from the ideal saturation current due to general ion recombination. Although a correction method based on the Boag theory has been employed, the theory assumes that ionized charge density in an ionization chamber (IC) is spatially uniform throughout the irradiation volume. For particle pencil beam scanning, however, the charge density is not uniform, because the fluence distribution of a pencil beam is not uniform. The aim of this study was to verify the effect of the nonuniformity ofmore » ionized charge density on the gain drop due to general ion recombination. Methods: The authors measured the saturation curve, namely, the applied voltage versus measured current, using a large plane-parallel IC and 24-channel parallel-plate IC with concentric electrodes. To verify the effect of the nonuniform ionized charge density on the measured saturation curve, the authors calculated the saturation curve using a method which takes into account the nonuniform ionized charge density and compared it with the measured saturation curves. Results: Measurement values of the different saturation curves in the different channels of the concentric electrodes differed and were consistent with the calculated values. The saturation curves measured by the large plane-parallel IC were also consistent with the calculation results, including the estimation error of beam size and of setup misalignment. Although the impact of the nonuniform ionized charge density on the gain drop was clinically negligible with the conventional beam intensity, it was expected that the impact would increase with higher ionized charge density. Conclusions: For pencil beam scanning, the assumption of the conventional Boag theory is not valid. Furthermore, the nonuniform ionized charge density affects the prediction accuracy of gain drop when the ionized charge density is increased by a higher dose rate and/or lower beam size.« less

Improving AIRS Radiance Spectra in High Contrast Scenes Using MODIS

NASA Technical Reports Server (NTRS)

Pagano, Thomas S.; Aumann, Hartmut H.; Manning, Evan M.; Elliott, Denis A.; Broberg, Steven E.

2015-01-01

The Atmospheric Infrared Sounder (AIRS) on the EOS Aqua Spacecraft was launched on May 4, 2002. AIRS acquires hyperspectral infrared radiances in 2378 channels ranging in wavelength from 3.7-15.4 microns with spectral resolution of better than 1200, and spatial resolution of 13.5 km with global daily coverage. The AIRS is designed to measure temperature and water vapor profiles for improvement in weather forecast accuracy and improved understanding of climate processes. As with most instruments, the AIRS Point Spread Functions (PSFs) are not the same for all detectors. When viewing a non-uniform scene, this causes a significant radiometric error in some channels that is scene dependent and cannot be removed without knowledge of the underlying scene. The magnitude of the error depends on the combination of non-uniformity of the AIRS spatial response for a given channel and the non-uniformity of the scene, but is typically only noticeable in about 1% of the scenes and about 10% of the channels. The current solution is to avoid those channels when performing geophysical retrievals. In this effort we use data from the Moderate Resolution Imaging Spectroradiometer (MODIS) instrument to provide information on the scene uniformity that is used to correct the AIRS data. For the vast majority of channels and footprints the technique works extremely well when compared to a Principal Component (PC) reconstruction of the AIRS channels. In some cases where the scene has high inhomogeneity in an irregular pattern, and in some channels, the method can actually degrade the spectrum. Most of the degraded channels appear to be slightly affected by random noise introduced in the process, but those with larger degradation may be affected by alignment errors in the AIRS relative to MODIS or uncertainties in the PSF. Despite these errors, the methodology shows the ability to correct AIRS radiances in non-uniform scenes under some of the worst case conditions and improves the ability to match AIRS and MODIS radiances in non-uniform scenes.

Geometry correction Algorithm for UAV Remote Sensing Image Based on Improved Neural Network

NASA Astrophysics Data System (ADS)

Liu, Ruian; Liu, Nan; Zeng, Beibei; Chen, Tingting; Yin, Ninghao

2018-03-01

Aiming at the disadvantage of current geometry correction algorithm for UAV remote sensing image, a new algorithm is proposed. Adaptive genetic algorithm (AGA) and RBF neural network are introduced into this algorithm. And combined with the geometry correction principle for UAV remote sensing image, the algorithm and solving steps of AGA-RBF are presented in order to realize geometry correction for UAV remote sensing. The correction accuracy and operational efficiency is improved through optimizing the structure and connection weight of RBF neural network separately with AGA and LMS algorithm. Finally, experiments show that AGA-RBF algorithm has the advantages of high correction accuracy, high running rate and strong generalization ability.

Population of 224 realistic human subject-based computational breast phantoms

DOE Office of Scientific and Technical Information (OSTI.GOV)

Erickson, David W.; Wells, Jered R., E-mail: jered.wells@duke.edu; Sturgeon, Gregory M.

Purpose: To create a database of highly realistic and anatomically variable 3D virtual breast phantoms based on dedicated breast computed tomography (bCT) data. Methods: A tissue classification and segmentation algorithm was used to create realistic and detailed 3D computational breast phantoms based on 230 + dedicated bCT datasets from normal human subjects. The breast volume was identified using a coarse three-class fuzzy C-means segmentation algorithm which accounted for and removed motion blur at the breast periphery. Noise in the bCT data was reduced through application of a postreconstruction 3D bilateral filter. A 3D adipose nonuniformity (bias field) correction was thenmore » applied followed by glandular segmentation using a 3D bias-corrected fuzzy C-means algorithm. Multiple tissue classes were defined including skin, adipose, and several fractional glandular densities. Following segmentation, a skin mask was produced which preserved the interdigitated skin, adipose, and glandular boundaries of the skin interior. Finally, surface modeling was used to produce digital phantoms with methods complementary to the XCAT suite of digital human phantoms. Results: After rejecting some datasets due to artifacts, 224 virtual breast phantoms were created which emulate the complex breast parenchyma of actual human subjects. The volume breast density (with skin) ranged from 5.5% to 66.3% with a mean value of 25.3% ± 13.2%. Breast volumes ranged from 25.0 to 2099.6 ml with a mean value of 716.3 ± 386.5 ml. Three breast phantoms were selected for imaging with digital compression (using finite element modeling) and simple ray-tracing, and the results show promise in their potential to produce realistic simulated mammograms. Conclusions: This work provides a new population of 224 breast phantoms based on in vivo bCT data for imaging research. Compared to previous studies based on only a few prototype cases, this dataset provides a rich source of new cases spanning a wide range of breast types, volumes, densities, and parenchymal patterns.« less

Population of 224 realistic human subject-based computational breast phantoms

PubMed Central

Erickson, David W.; Wells, Jered R.; Sturgeon, Gregory M.; Dobbins, James T.; Segars, W. Paul; Lo, Joseph Y.

2016-01-01

Purpose: To create a database of highly realistic and anatomically variable 3D virtual breast phantoms based on dedicated breast computed tomography (bCT) data. Methods: A tissue classification and segmentation algorithm was used to create realistic and detailed 3D computational breast phantoms based on 230 + dedicated bCT datasets from normal human subjects. The breast volume was identified using a coarse three-class fuzzy C-means segmentation algorithm which accounted for and removed motion blur at the breast periphery. Noise in the bCT data was reduced through application of a postreconstruction 3D bilateral filter. A 3D adipose nonuniformity (bias field) correction was then applied followed by glandular segmentation using a 3D bias-corrected fuzzy C-means algorithm. Multiple tissue classes were defined including skin, adipose, and several fractional glandular densities. Following segmentation, a skin mask was produced which preserved the interdigitated skin, adipose, and glandular boundaries of the skin interior. Finally, surface modeling was used to produce digital phantoms with methods complementary to the XCAT suite of digital human phantoms. Results: After rejecting some datasets due to artifacts, 224 virtual breast phantoms were created which emulate the complex breast parenchyma of actual human subjects. The volume breast density (with skin) ranged from 5.5% to 66.3% with a mean value of 25.3% ± 13.2%. Breast volumes ranged from 25.0 to 2099.6 ml with a mean value of 716.3 ± 386.5 ml. Three breast phantoms were selected for imaging with digital compression (using finite element modeling) and simple ray-tracing, and the results show promise in their potential to produce realistic simulated mammograms. Conclusions: This work provides a new population of 224 breast phantoms based on in vivo bCT data for imaging research. Compared to previous studies based on only a few prototype cases, this dataset provides a rich source of new cases spanning a wide range of breast types, volumes, densities, and parenchymal patterns. PMID:26745896

Influence of the partial volume correction method on 18F-fluorodeoxyglucose brain kinetic modelling from dynamic PET images reconstructed with resolution model based OSEM

PubMed Central

Bowen, Spencer L.; Byars, Larry G.; Michel, Christian J.; Chonde, Daniel B.; Catana, Ciprian

2014-01-01

Kinetic parameters estimated from dynamic 18F-fluorodeoxyglucose PET acquisitions have been used frequently to assess brain function in humans. Neglecting partial volume correction (PVC) for a dynamic series has been shown to produce significant bias in model estimates. Accurate PVC requires a space-variant model describing the reconstructed image spatial point spread function (PSF) that accounts for resolution limitations, including non-uniformities across the field of view due to the parallax effect. For OSEM, image resolution convergence is local and influenced significantly by the number of iterations, the count density, and background-to-target ratio. As both count density and background-to-target values for a brain structure can change during a dynamic scan, the local image resolution may also concurrently vary. When PVC is applied post-reconstruction the kinetic parameter estimates may be biased when neglecting the frame-dependent resolution. We explored the influence of the PVC method and implementation on kinetic parameters estimated by fitting 18F-fluorodeoxyglucose dynamic data acquired on a dedicated brain PET scanner and reconstructed with and without PSF modelling in the OSEM algorithm. The performance of several PVC algorithms was quantified with a phantom experiment, an anthropomorphic Monte Carlo simulation, and a patient scan. Using the last frame reconstructed image only for regional spread function (RSF) generation, as opposed to computing RSFs for each frame independently, and applying perturbation GTM PVC with PSF based OSEM produced the lowest magnitude bias kinetic parameter estimates in most instances, although at the cost of increased noise compared to the PVC methods utilizing conventional OSEM. Use of the last frame RSFs for PVC with no PSF modelling in the OSEM algorithm produced the lowest bias in CMRGlc estimates, although by less than 5% in most cases compared to the other PVC methods. The results indicate that the PVC implementation and choice of PSF modelling in the reconstruction can significantly impact model parameters. PMID:24052021

Validation of the TOPEX rain algorithm: Comparison with ground-based radar

NASA Astrophysics Data System (ADS)

McMillan, A. C.; Quartly, G. D.; Srokosz, M. A.; Tournadre, J.

2002-02-01

Recently developed algorithms have shown the potential recovery of rainfall information from spaceborne dual-frequency altimeters. Given the long mission achieved with TOPEX and the prospect of several other dual-frequency altimeters, we need to validate the altimetrically derived values so as to foster their integration with rain information from different sensors. Comparison with some alternative climatologies shows the bimonthly means for TOPEX to be low. Rather than apply a bulk correction we investigate individual rain events to understand the cause of TOPEX's underestimation. In this paper we compare TOPEX with near-simultaneous ground-based rain radars based at a number of locations, examining both the detection of rain and the quantitative values inferred. The altimeter-only algorithm is found to flag false rain events in very low wind states (<3.8 m s-1) the application of an extra test, involving the liquid water path as sensed by the microwave radiometer, removes the spurious detections. Some false detections of rain also occur at high wind speeds (>20 m s-1), where the empirical dual-frequency relationship is less well defined. In the intermediate range of wind speeds, the TOPEX detections are usually good, with the instrument picking up small-scale variations that cannot be recovered from infrared or passive microwave techniques. The magnitude of TOPEX's rain retrievals can differ by a factor of 2 from the ground-based radar, but this may reflect the uncertainties in the validation data. In general, over these individual point comparisons TOPEX values appear to exceed the ``ground truth.'' Taking account of all the factors affecting the comparisons, we conclude that the TOPEX climatology could be improved by, in the first instance, incorporating the radiometric test and employing a better estimate of the melting layer height. Appropriate corrections for nonuniform beam filling and drizzle fraction are harder to define globally.

Investigation of the thickness non-uniformity of the very thin silicon-strip detectors

NASA Astrophysics Data System (ADS)

Liu, Qiang; Ye, Yanlin; Li, Zhihuan; Lin, Chengjian; Jia, Huiming; Ge, Yucheng; Li, Qite; Lou, Jianling; Yang, Xiaofei; Yang, Biao; Feng, Jun; Zang, Hongliang; Chen, Zhiqiang; Liu, Yang; Liu, Wei; Chen, Sidong; Yu, Hanzhou; Li, Jingjing; Zhang, Yun; Yang, Feng; Yang, Lei; Ma, Nanru; Sun, Lijie; Wang, Dongxi

2018-07-01

The properties of some very thin (∼ 20 μm) large-area Single-sided Silicon-Strip Detectors (SSSDs) were investigated by using the 12C-particles elastically scattered from a Au target. In the detection system, each thin SSSD was installed in front of a thick (300 μm or 500 μm) Double-sided Silicon-Strip Detector (DSSD) to form a ΔE - E particle-telescope. The energy calibration of these detectors was realized by varying the beam energy and also by the irradiation from a three-component α-particle source. The thickness distribution each SSSD is precisely determined from the energy loss in the thin layer, which was independently measured by the corresponding DSSD. It is found that, for the SSSD with the nominal thicknesses of ∼ 20 μm, the real thickness may vary by several μm over the active area. The reason for this large non-uniformity still needs to be investigated. For the present application, this non-uniformity could be corrected according to the known pixel-thickness. This correction allows to restore a good particle identification (PID) performance for the entire large-area detector, the importance of which is demonstrated by an example of measuring the cluster-decays of the highly-excited resonant states in 16O.

Enhancement of a 2D front-tracking algorithm with a non-uniform distribution of Lagrangian markers

NASA Astrophysics Data System (ADS)

Febres, Mijail; Legendre, Dominique

2018-04-01

The 2D front tracking method is enhanced to control the development of spurious velocities for non-uniform distributions of markers. The hybrid formulation of Shin et al. (2005) [7] is considered. A new tangent calculation is proposed for the calculation of the tension force at markers. A new reconstruction method is also proposed to manage non-uniform distributions of markers. We show that for both the static and the translating spherical drop test case the spurious currents are reduced to the machine precision. We also show that the ratio of the Lagrangian grid size Δs over the Eulerian grid size Δx has to satisfy Δs / Δx > 0.2 for ensuring such low level of spurious velocity. The method is found to provide very good agreement with benchmark test cases from the literature.

Multi-Resolution Unstructured Grid-Generation for Geophysical Applications on the Sphere

NASA Technical Reports Server (NTRS)

Engwirda, Darren

2015-01-01

An algorithm for the generation of non-uniform unstructured grids on ellipsoidal geometries is described. This technique is designed to generate high quality triangular and polygonal meshes appropriate for general circulation modelling on the sphere, including applications to atmospheric and ocean simulation, and numerical weather predication. Using a recently developed Frontal-Delaunay-refinement technique, a method for the construction of high-quality unstructured ellipsoidal Delaunay triangulations is introduced. A dual polygonal grid, derived from the associated Voronoi diagram, is also optionally generated as a by-product. Compared to existing techniques, it is shown that the Frontal-Delaunay approach typically produces grids with near-optimal element quality and smooth grading characteristics, while imposing relatively low computational expense. Initial results are presented for a selection of uniform and non-uniform ellipsoidal grids appropriate for large-scale geophysical applications. The use of user-defined mesh-sizing functions to generate smoothly graded, non-uniform grids is discussed.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bolotnikov, A. E.; Camarda, G. S.; Cui, Y.

Following our successful demonstration of the position-sensitive virtual Frisch-grid detectors, we investigated the feasibility of using high-granularity position sensing to correct response non-uniformities caused by the crystal defects in CdZnTe (CZT) pixelated detectors. The development of high-granularity detectors able to correct response non-uniformities on a scale comparable to the size of electron clouds opens the opportunity of using unselected off-the-shelf CZT material, whilst still assuring high spectral resolution for the majority of the detectors fabricated from an ingot. Here, we present the results from testing 3D position-sensitive 15×15×10 mm 3 pixelated detectors, fabricated with conventional pixel patterns with progressively smallermore » pixel sizes: 1.4, 0.8, and 0.5 mm. We employed the readout system based on the H3D front-end multi-channel ASIC developed by BNL's Instrumentation Division in collaboration with the University of Michigan. We use the sharing of electron clouds among several adjacent pixels to measure locations of interaction points with sub-pixel resolution. By using the detectors with small-pixel sizes and a high probability of the charge-sharing events, we were able to improve their spectral resolutions in comparison to the baseline levels, measured for the 1.4-mm pixel size detectors with small fractions of charge-sharing events. These results demonstrate that further enhancement of the performance of CZT pixelated detectors and reduction of costs are possible by using high spatial-resolution position information of interaction points to correct the small-scale response non-uniformities caused by crystal defects present in most devices.« less

Determining optimum wavelength of ultraviolet rays to pre-exposure of non-uniformity error correction in Gafchromic EBT2 films

NASA Astrophysics Data System (ADS)

Katsuda, Toshizo; Gotanda, Rumi; Gotanda, Tatsuhiro; Akagawa, Takuya; Tanki, Nobuyoshi; Kuwano, Tadao; Noguchi, Atsushi; Yabunaka, Kouichi

2018-03-01

Gafchromic films have been used to measure X-ray doses in diagnostic radiology such as computed tomography. The double-exposure technique is used to correct non-uniformity error of Gafchromic EBT2 films. Because of the heel effect of diagnostic x-rays, ultraviolet A (UV-A) is intended to be used as a substitute for x-rays. When using a UV-A light-emitting diode (LED), it is necessary to determine the effective optimal UV wavelength for the active layer of Gafchromic EBT2 films. This study evaluated the relation between the increase in color density of Gafchromic EBT2 films and the UV wavelengths. First, to correct non-uniformity, a Gafchromic EBT2 film was pre-irradiated using uniform UV-A radiation for 60 min from a 72-cm distance. Second, the film was irradiated using a UV-LED with a wavelength of 353-410 nm for 60 min from a 5.3-cm distance. The maximum, minimum, and mean ± standard deviation (SD) of pixel values of the subtraction images were evaluated using 0.5 inches of a circular region of interest (ROI). The highest mean ± SD (8915.25 ± 608.86) of the pixel value was obtained at a wavelength of 375 nm. The results indicated that 375 nm is the most effective and sensitive wavelength of UV-A for Gafchromic EBT2 films and that UV-A can be used as a substitute for x-rays in the double-exposure technique.

Quantitative multi-pinhole small-animal SPECT: uniform versus non-uniform Chang attenuation correction.

PubMed

Wu, C; de Jong, J R; Gratama van Andel, H A; van der Have, F; Vastenhouw, B; Laverman, P; Boerman, O C; Dierckx, R A J O; Beekman, F J

2011-09-21

Attenuation of photon flux on trajectories between the source and pinhole apertures affects the quantitative accuracy of reconstructed single-photon emission computed tomography (SPECT) images. We propose a Chang-based non-uniform attenuation correction (NUA-CT) for small-animal SPECT/CT with focusing pinhole collimation, and compare the quantitative accuracy with uniform Chang correction based on (i) body outlines extracted from x-ray CT (UA-CT) and (ii) on hand drawn body contours on the images obtained with three integrated optical cameras (UA-BC). Measurements in phantoms and rats containing known activities of isotopes were conducted for evaluation. In (125)I, (201)Tl, (99m)Tc and (111)In phantom experiments, average relative errors comparing to the gold standards measured in a dose calibrator were reduced to 5.5%, 6.8%, 4.9% and 2.8%, respectively, with NUA-CT. In animal studies, these errors were 2.1%, 3.3%, 2.0% and 2.0%, respectively. Differences in accuracy on average between results of NUA-CT, UA-CT and UA-BC were less than 2.3% in phantom studies and 3.1% in animal studies except for (125)I (3.6% and 5.1%, respectively). All methods tested provide reasonable attenuation correction and result in high quantitative accuracy. NUA-CT shows superior accuracy except for (125)I, where other factors may have more impact on the quantitative accuracy than the selected attenuation correction.

Aeroelastic Deflection of NURBS Geometry

NASA Technical Reports Server (NTRS)

Samareh, Jamshid A.

1998-01-01

The purpose of this paper is to present an algorithm for using NonUniform Rational B-Spline (NURBS) representation in an aeroelastic loop. The algorithm is based on creating a least-squares NURBS surface representing the aeroelastic defection. The resulting NURBS surfaces are used to update either the original Computer- Aided Design (CAD) model, Computational Structural Mechanics (CSM) grid or the Computational Fluid Dynamics (CFD) grid. Results are presented for a generic High-Speed Civil Transport (HSCT).

Rotational distortion correction in endoscopic optical coherence tomography based on speckle decorrelation

PubMed Central

Uribe-Patarroyo, Néstor; Bouma, Brett E.

2015-01-01

We present a new technique for the correction of nonuniform rotation distortion in catheter-based optical coherence tomography (OCT), based on the statistics of speckle between A-lines using intensity-based dynamic light scattering. This technique does not rely on tissue features and can be performed on single frames of data, thereby enabling real-time image correction. We demonstrate its suitability in a gastrointestinal balloon-catheter OCT system, determining the actual rotational speed with high temporal resolution, and present corrected cross-sectional and en face views showing significant enhancement of image quality. PMID:26625040

Multimodal Imaging and Lighting Bias Correction for Improved μPAD-based Water Quality Monitoring via Smartphones

NASA Astrophysics Data System (ADS)

McCracken, Katherine E.; Angus, Scott V.; Reynolds, Kelly A.; Yoon, Jeong-Yeol

2016-06-01

Smartphone image-based sensing of microfluidic paper analytical devices (μPADs) offers low-cost and mobile evaluation of water quality. However, consistent quantification is a challenge due to variable environmental, paper, and lighting conditions, especially across large multi-target μPADs. Compensations must be made for variations between images to achieve reproducible results without a separate lighting enclosure. We thus developed a simple method using triple-reference point normalization and a fast-Fourier transform (FFT)-based pre-processing scheme to quantify consistent reflected light intensity signals under variable lighting and channel conditions. This technique was evaluated using various light sources, lighting angles, imaging backgrounds, and imaging heights. Further testing evaluated its handle of absorbance, quenching, and relative scattering intensity measurements from assays detecting four water contaminants - Cr(VI), total chlorine, caffeine, and E. coli K12 - at similar wavelengths using the green channel of RGB images. Between assays, this algorithm reduced error from μPAD surface inconsistencies and cross-image lighting gradients. Although the algorithm could not completely remove the anomalies arising from point shadows within channels or some non-uniform background reflections, it still afforded order-of-magnitude quantification and stable assay specificity under these conditions, offering one route toward improving smartphone quantification of μPAD assays for in-field water quality monitoring.

A distributed scheduling algorithm for heterogeneous real-time systems

NASA Technical Reports Server (NTRS)

Zeineldine, Osman; El-Toweissy, Mohamed; Mukkamala, Ravi

1991-01-01

Much of the previous work on load balancing and scheduling in distributed environments was concerned with homogeneous systems and homogeneous loads. Several of the results indicated that random policies are as effective as other more complex load allocation policies. The effects of heterogeneity on scheduling algorithms for hard real time systems is examined. A distributed scheduler specifically to handle heterogeneities in both nodes and node traffic is proposed. The performance of the algorithm is measured in terms of the percentage of jobs discarded. While a random task allocation is very sensitive to heterogeneities, the algorithm is shown to be robust to such non-uniformities in system components and load.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schalkoff, R.J.

This report summarizes work after 4 years of a 3-year project (no-cost extension of the above-referenced project for a period of 12 months granted). The fourth generation of a vision sensing head for geometric and photometric scene sensing has been built and tested. Estimation algorithms for automatic sensor calibration updating under robot motion have been developed and tested. We have modified the geometry extraction component of the rendering pipeline. Laser scanning now produces highly accurate points on segmented curves. These point-curves are input to a NURBS (non-uniform rational B-spline) skinning procedure to produce interpolating surface segments. The NURBS formulation includesmore » quadrics as a sub-class, thus this formulation allows much greater flexibility without the attendant instability of generating an entire quadric surface. We have also implemented correction for diffuse lighting and specular effects. The QRobot joint level control was extended to a complete semi-autonomous robot control system for D and D operations. The imaging and VR subsystems have been integrated and tested.« less

CAS2D: FORTRAN program for nonrotating blade-to-blade, steady, potential transonic cascade flows

NASA Technical Reports Server (NTRS)

Dulikravich, D. S.

1980-01-01

An exact, full-potential-equation (FPE) model for the steady, irrotational, homentropic and homoenergetic flow of a compressible, homocompositional, inviscid fluid through two dimensional planar cascades of airfoils was derived, together with its appropriate boundary conditions. A computer program, CAS2D, was developed that numerically solves an artificially time-dependent form of the actual FPE. The governing equation was discretized by using type-dependent, rotated finite differencing and the finite area technique. The flow field was discretized by providing a boundary-fitted, nonuniform computational mesh. The mesh was generated by using a sequence of conforming mapping, nonorthogonal coordinate stretching, and local, isoparametric, bilinear mapping functions. The discretized form of the FPE was solved iteratively by using successive line overrelaxation. The possible isentropic shocks were correctly captured by adding explicitly an artificial viscosity in a conservative form. In addition, a three-level consecutive, mesh refinement feature makes CAS2D a reliable and fast algorithm for the analysis of transonic, two dimensional cascade flows.

ITERATIVE ALGORITHM FOR NONUNIFORM INVERSE FAST FOURIER TRANSFORM (NU- IFFT). (R825225)

EPA Science Inventory

The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

AN ACCURATE ALGORITHM FOR NONUNIFORM FAST FOURIER TRANSFORMS (NUFFT). (R825225)

EPA Science Inventory

The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

Ray-tracing method for creeping waves on arbitrarily shaped nonuniform rational B-splines surfaces.

PubMed

Chen, Xi; He, Si-Yuan; Yu, Ding-Feng; Yin, Hong-Cheng; Hu, Wei-Dong; Zhu, Guo-Qiang

2013-04-01

An accurate creeping ray-tracing algorithm is presented in this paper to determine the tracks of creeping waves (or creeping rays) on arbitrarily shaped free-form parametric surfaces [nonuniform rational B-splines (NURBS) surfaces]. The main challenge in calculating the surface diffracted fields on NURBS surfaces is due to the difficulty in determining the geodesic paths along which the creeping rays propagate. On one single parametric surface patch, the geodesic paths need to be computed by solving the geodesic equations numerically. Furthermore, realistic objects are generally modeled as the union of several connected NURBS patches. Due to the discontinuity of the parameter between the patches, it is more complicated to compute geodesic paths on several connected patches than on one single patch. Thus, a creeping ray-tracing algorithm is presented in this paper to compute the geodesic paths of creeping rays on the complex objects that are modeled as the combination of several NURBS surface patches. In the algorithm, the creeping ray tracing on each surface patch is performed by solving the geodesic equations with a Runge-Kutta method. When the creeping ray propagates from one patch to another, a transition method is developed to handle the transition of the creeping ray tracing across the border between the patches. This creeping ray-tracing algorithm can meet practical requirements because it can be applied to the objects with complex shapes. The algorithm can also extend the applicability of NURBS for electromagnetic and optical applications. The validity and usefulness of the algorithm can be verified from the numerical results.

An Implicit Characteristic Based Method for Electromagnetics

NASA Technical Reports Server (NTRS)

Beggs, John H.; Briley, W. Roger

2001-01-01

An implicit characteristic-based approach for numerical solution of Maxwell's time-dependent curl equations in flux conservative form is introduced. This method combines a characteristic based finite difference spatial approximation with an implicit lower-upper approximate factorization (LU/AF) time integration scheme. This approach is advantageous for three-dimensional applications because the characteristic differencing enables a two-factor approximate factorization that retains its unconditional stability in three space dimensions, and it does not require solution of tridiagonal systems. Results are given both for a Fourier analysis of stability, damping and dispersion properties, and for one-dimensional model problems involving propagation and scattering for free space and dielectric materials using both uniform and nonuniform grids. The explicit Finite Difference Time Domain Method (FDTD) algorithm is used as a convenient reference algorithm for comparison. The one-dimensional results indicate that for low frequency problems on a highly resolved uniform or nonuniform grid, this LU/AF algorithm can produce accurate solutions at Courant numbers significantly greater than one, with a corresponding improvement in efficiency for simulating a given period of time. This approach appears promising for development of dispersion optimized LU/AF schemes for three dimensional applications.

Iterative image reconstruction for PROPELLER-MRI using the nonuniform fast fourier transform.

PubMed

Tamhane, Ashish A; Anastasio, Mark A; Gui, Minzhi; Arfanakis, Konstantinos

2010-07-01

To investigate an iterative image reconstruction algorithm using the nonuniform fast Fourier transform (NUFFT) for PROPELLER (Periodically Rotated Overlapping ParallEL Lines with Enhanced Reconstruction) MRI. Numerical simulations, as well as experiments on a phantom and a healthy human subject were used to evaluate the performance of the iterative image reconstruction algorithm for PROPELLER, and compare it with that of conventional gridding. The trade-off between spatial resolution, signal to noise ratio, and image artifacts, was investigated for different values of the regularization parameter. The performance of the iterative image reconstruction algorithm in the presence of motion was also evaluated. It was demonstrated that, for a certain range of values of the regularization parameter, iterative reconstruction produced images with significantly increased signal to noise ratio, reduced artifacts, for similar spatial resolution, compared with gridding. Furthermore, the ability to reduce the effects of motion in PROPELLER-MRI was maintained when using the iterative reconstruction approach. An iterative image reconstruction technique based on the NUFFT was investigated for PROPELLER MRI. For a certain range of values of the regularization parameter, the new reconstruction technique may provide PROPELLER images with improved image quality compared with conventional gridding. (c) 2010 Wiley-Liss, Inc.

Iterative Image Reconstruction for PROPELLER-MRI using the NonUniform Fast Fourier Transform

PubMed Central

Tamhane, Ashish A.; Anastasio, Mark A.; Gui, Minzhi; Arfanakis, Konstantinos

2013-01-01

Purpose To investigate an iterative image reconstruction algorithm using the non-uniform fast Fourier transform (NUFFT) for PROPELLER (Periodically Rotated Overlapping parallEL Lines with Enhanced Reconstruction) MRI. Materials and Methods Numerical simulations, as well as experiments on a phantom and a healthy human subject were used to evaluate the performance of the iterative image reconstruction algorithm for PROPELLER, and compare it to that of conventional gridding. The trade-off between spatial resolution, signal to noise ratio, and image artifacts, was investigated for different values of the regularization parameter. The performance of the iterative image reconstruction algorithm in the presence of motion was also evaluated. Results It was demonstrated that, for a certain range of values of the regularization parameter, iterative reconstruction produced images with significantly increased SNR, reduced artifacts, for similar spatial resolution, compared to gridding. Furthermore, the ability to reduce the effects of motion in PROPELLER-MRI was maintained when using the iterative reconstruction approach. Conclusion An iterative image reconstruction technique based on the NUFFT was investigated for PROPELLER MRI. For a certain range of values of the regularization parameter the new reconstruction technique may provide PROPELLER images with improved image quality compared to conventional gridding. PMID:20578028

Correction of Gradient Nonlinearity Bias in Quantitative Diffusion Parameters of Renal Tissue with Intra Voxel Incoherent Motion.

PubMed

Malyarenko, Dariya I; Pang, Yuxi; Senegas, Julien; Ivancevic, Marko K; Ross, Brian D; Chenevert, Thomas L

2015-12-01

Spatially non-uniform diffusion weighting bias due to gradient nonlinearity (GNL) causes substantial errors in apparent diffusion coefficient (ADC) maps for anatomical regions imaged distant from magnet isocenter. Our previously-described approach allowed effective removal of spatial ADC bias from three orthogonal DWI measurements for mono-exponential media of arbitrary anisotropy. The present work evaluates correction feasibility and performance for quantitative diffusion parameters of the two-component IVIM model for well-perfused and nearly isotropic renal tissue. Sagittal kidney DWI scans of a volunteer were performed on a clinical 3T MRI scanner near isocenter and offset superiorly. Spatially non-uniform diffusion weighting due to GNL resulted both in shift and broadening of perfusion-suppressed ADC histograms for off-center DWI relative to unbiased measurements close to isocenter. Direction-average DW-bias correctors were computed based on the known gradient design provided by vendor. The computed bias maps were empirically confirmed by coronal DWI measurements for an isotropic gel-flood phantom. Both phantom and renal tissue ADC bias for off-center measurements was effectively removed by applying pre-computed 3D correction maps. Comparable ADC accuracy was achieved for corrections of both b -maps and DWI intensities in presence of IVIM perfusion. No significant bias impact was observed for IVIM perfusion fraction.

Correction of Gradient Nonlinearity Bias in Quantitative Diffusion Parameters of Renal Tissue with Intra Voxel Incoherent Motion

PubMed Central

Malyarenko, Dariya I.; Pang, Yuxi; Senegas, Julien; Ivancevic, Marko K.; Ross, Brian D.; Chenevert, Thomas L.

2015-01-01

Spatially non-uniform diffusion weighting bias due to gradient nonlinearity (GNL) causes substantial errors in apparent diffusion coefficient (ADC) maps for anatomical regions imaged distant from magnet isocenter. Our previously-described approach allowed effective removal of spatial ADC bias from three orthogonal DWI measurements for mono-exponential media of arbitrary anisotropy. The present work evaluates correction feasibility and performance for quantitative diffusion parameters of the two-component IVIM model for well-perfused and nearly isotropic renal tissue. Sagittal kidney DWI scans of a volunteer were performed on a clinical 3T MRI scanner near isocenter and offset superiorly. Spatially non-uniform diffusion weighting due to GNL resulted both in shift and broadening of perfusion-suppressed ADC histograms for off-center DWI relative to unbiased measurements close to isocenter. Direction-average DW-bias correctors were computed based on the known gradient design provided by vendor. The computed bias maps were empirically confirmed by coronal DWI measurements for an isotropic gel-flood phantom. Both phantom and renal tissue ADC bias for off-center measurements was effectively removed by applying pre-computed 3D correction maps. Comparable ADC accuracy was achieved for corrections of both b-maps and DWI intensities in presence of IVIM perfusion. No significant bias impact was observed for IVIM perfusion fraction. PMID:26811845

JIGSAW-GEO (1.0): Locally Orthogonal Staggered Unstructured Grid Generation for General Circulation Modelling on the Sphere

NASA Technical Reports Server (NTRS)

Engwirda, Darren

2017-01-01

An algorithm for the generation of non-uniform, locally orthogonal staggered unstructured spheroidal grids is described. This technique is designed to generate very high-quality staggered VoronoiDelaunay meshes appropriate for general circulation modelling on the sphere, including applications to atmospheric simulation, ocean-modelling and numerical weather prediction. Using a recently developed Frontal-Delaunay refinement technique, a method for the construction of high-quality unstructured spheroidal Delaunay triangulations is introduced. A locally orthogonal polygonal grid, derived from the associated Voronoi diagram, is computed as the staggered dual. It is shown that use of the Frontal-Delaunay refinement technique allows for the generation of very high-quality unstructured triangulations, satisfying a priori bounds on element size and shape. Grid quality is further improved through the application of hill-climbing-type optimisation techniques. Overall, the algorithm is shown to produce grids with very high element quality and smooth grading characteristics, while imposing relatively low computational expense. A selection of uniform and non-uniform spheroidal grids appropriate for high-resolution, multi-scale general circulation modelling are presented. These grids are shown to satisfy the geometric constraints associated with contemporary unstructured C-grid-type finite-volume models, including the Model for Prediction Across Scales (MPAS-O). The use of user-defined mesh-spacing functions to generate smoothly graded, non-uniform grids for multi-resolution-type studies is discussed in detail.

JIGSAW-GEO (1.0): locally orthogonal staggered unstructured grid generation for general circulation modelling on the sphere

NASA Astrophysics Data System (ADS)

Engwirda, Darren

2017-06-01

An algorithm for the generation of non-uniform, locally orthogonal staggered unstructured spheroidal grids is described. This technique is designed to generate very high-quality staggered Voronoi-Delaunay meshes appropriate for general circulation modelling on the sphere, including applications to atmospheric simulation, ocean-modelling and numerical weather prediction. Using a recently developed Frontal-Delaunay refinement technique, a method for the construction of high-quality unstructured spheroidal Delaunay triangulations is introduced. A locally orthogonal polygonal grid, derived from the associated Voronoi diagram, is computed as the staggered dual. It is shown that use of the Frontal-Delaunay refinement technique allows for the generation of very high-quality unstructured triangulations, satisfying a priori bounds on element size and shape. Grid quality is further improved through the application of hill-climbing-type optimisation techniques. Overall, the algorithm is shown to produce grids with very high element quality and smooth grading characteristics, while imposing relatively low computational expense. A selection of uniform and non-uniform spheroidal grids appropriate for high-resolution, multi-scale general circulation modelling are presented. These grids are shown to satisfy the geometric constraints associated with contemporary unstructured C-grid-type finite-volume models, including the Model for Prediction Across Scales (MPAS-O). The use of user-defined mesh-spacing functions to generate smoothly graded, non-uniform grids for multi-resolution-type studies is discussed in detail.

Design of multiplier-less sharp transition width non-uniform filter banks using gravitational search algorithm

NASA Astrophysics Data System (ADS)

Bindiya T., S.; Elias, Elizabeth

2015-01-01

In this paper, multiplier-less near-perfect reconstruction tree-structured filter banks are proposed. Filters with sharp transition width are preferred in filter banks in order to reduce the aliasing between adjacent channels. When sharp transition width filters are designed as conventional finite impulse response filters, the order of the filters will become very high leading to increased complexity. The frequency response masking (FRM) method is known to result in linear-phase sharp transition width filters with low complexity. It is found that the proposed design method, which is based on FRM, gives better results compared to the earlier reported results, in terms of the number of multipliers when sharp transition width filter banks are needed. To further reduce the complexity and power consumption, the tree-structured filter bank is made totally multiplier-less by converting the continuous filter bank coefficients to finite precision coefficients in the signed power of two space. This may lead to performance degradation and calls for the use of a suitable optimisation technique. In this paper, gravitational search algorithm is proposed to be used in the design of the multiplier-less tree-structured uniform as well as non-uniform filter banks. This design method results in uniform and non-uniform filter banks which are simple, alias-free, linear phase and multiplier-less and have sharp transition width.

Seamless stitching of tile scan microscope images.

PubMed

Legesse, F B; Chernavskaia, O; Heuke, S; Bocklitz, T; Meyer, T; Popp, J; Heintzmann, R

2015-06-01

For diagnostic purposes, optical imaging techniques need to obtain high-resolution images of extended biological specimens in reasonable time. The field of view of an objective lens, however, is often smaller than the sample size. To image the whole sample, laser scanning microscopes acquire tile scans that are stitched into larger mosaics. The appearance of such image mosaics is affected by visible edge artefacts that arise from various optical aberrations which manifest in grey level jumps across tile boundaries. In this contribution, a technique for stitching tiles into a seamless mosaic is presented. The stitching algorithm operates by equilibrating neighbouring edges and forcing the brightness at corners to a common value. The corrected image mosaics appear to be free from stitching artefacts and are, therefore, suited for further image analysis procedures. The contribution presents a novel method to seamlessly stitch tiles captured by a laser scanning microscope into a large mosaic. The motivation for the work is the failure of currently existing methods for stitching nonlinear, multimodal images captured by our microscopic setups. Our method eliminates the visible edge artefacts that appear between neighbouring tiles by taking into account the overall illumination differences among tiles in such mosaics. The algorithm first corrects the nonuniform brightness that exists within each of the tiles. It then compensates for grey level differences across tile boundaries by equilibrating neighbouring edges and forcing the brightness at the corners to a common value. After these artefacts have been removed further image analysis procedures can be applied on the microscopic images. Even though the solution presented here is tailored for the aforementioned specific case, it could be easily adapted to other contexts where image tiles are assembled into mosaics such as in astronomical or satellite photos. © 2015 The Authors Journal of Microscopy © 2015 Royal Microscopical Society.

Computationally efficient real-time interpolation algorithm for non-uniform sampled biosignals

PubMed Central

Eftekhar, Amir; Kindt, Wilko; Constandinou, Timothy G.

2016-01-01

This Letter presents a novel, computationally efficient interpolation method that has been optimised for use in electrocardiogram baseline drift removal. In the authors’ previous Letter three isoelectric baseline points per heartbeat are detected, and here utilised as interpolation points. As an extension from linear interpolation, their algorithm segments the interpolation interval and utilises different piecewise linear equations. Thus, the algorithm produces a linear curvature that is computationally efficient while interpolating non-uniform samples. The proposed algorithm is tested using sinusoids with different fundamental frequencies from 0.05 to 0.7 Hz and also validated with real baseline wander data acquired from the Massachusetts Institute of Technology University and Boston's Beth Israel Hospital (MIT-BIH) Noise Stress Database. The synthetic data results show an root mean square (RMS) error of 0.9 μV (mean), 0.63 μV (median) and 0.6 μV (standard deviation) per heartbeat on a 1 mVp–p 0.1 Hz sinusoid. On real data, they obtain an RMS error of 10.9 μV (mean), 8.5 μV (median) and 9.0 μV (standard deviation) per heartbeat. Cubic spline interpolation and linear interpolation on the other hand shows 10.7 μV, 11.6 μV (mean), 7.8 μV, 8.9 μV (median) and 9.8 μV, 9.3 μV (standard deviation) per heartbeat. PMID:27382478

Computationally efficient real-time interpolation algorithm for non-uniform sampled biosignals.

PubMed

Guven, Onur; Eftekhar, Amir; Kindt, Wilko; Constandinou, Timothy G

2016-06-01

This Letter presents a novel, computationally efficient interpolation method that has been optimised for use in electrocardiogram baseline drift removal. In the authors' previous Letter three isoelectric baseline points per heartbeat are detected, and here utilised as interpolation points. As an extension from linear interpolation, their algorithm segments the interpolation interval and utilises different piecewise linear equations. Thus, the algorithm produces a linear curvature that is computationally efficient while interpolating non-uniform samples. The proposed algorithm is tested using sinusoids with different fundamental frequencies from 0.05 to 0.7 Hz and also validated with real baseline wander data acquired from the Massachusetts Institute of Technology University and Boston's Beth Israel Hospital (MIT-BIH) Noise Stress Database. The synthetic data results show an root mean square (RMS) error of 0.9 μV (mean), 0.63 μV (median) and 0.6 μV (standard deviation) per heartbeat on a 1 mVp-p 0.1 Hz sinusoid. On real data, they obtain an RMS error of 10.9 μV (mean), 8.5 μV (median) and 9.0 μV (standard deviation) per heartbeat. Cubic spline interpolation and linear interpolation on the other hand shows 10.7 μV, 11.6 μV (mean), 7.8 μV, 8.9 μV (median) and 9.8 μV, 9.3 μV (standard deviation) per heartbeat.

Monte Carlo PDF method for turbulent reacting flow in a jet-stirred reactor

NASA Astrophysics Data System (ADS)

Roekaerts, D.

1992-01-01

A stochastic algorithm for the solution of the modeled scalar probability density function (PDF) transport equation for single-phase turbulent reacting flow is described. Cylindrical symmetry is assumed. The PDF is represented by ensembles of N representative values of the thermochemical variables in each cell of a nonuniform finite-difference grid and operations on these elements representing convection, diffusion, mixing and reaction are derived. A simplified model and solution algorithm which neglects the influence of turbulent fluctuations on mean reaction rates is also described. Both algorithms are applied to a selectivity problem in a real reactor.

GPU-accelerated non-uniform fast Fourier transform-based compressive sensing spectral domain optical coherence tomography.

PubMed

Xu, Daguang; Huang, Yong; Kang, Jin U

2014-06-16

We implemented the graphics processing unit (GPU) accelerated compressive sensing (CS) non-uniform in k-space spectral domain optical coherence tomography (SD OCT). Kaiser-Bessel (KB) function and Gaussian function are used independently as the convolution kernel in the gridding-based non-uniform fast Fourier transform (NUFFT) algorithm with different oversampling ratios and kernel widths. Our implementation is compared with the GPU-accelerated modified non-uniform discrete Fourier transform (MNUDFT) matrix-based CS SD OCT and the GPU-accelerated fast Fourier transform (FFT)-based CS SD OCT. It was found that our implementation has comparable performance to the GPU-accelerated MNUDFT-based CS SD OCT in terms of image quality while providing more than 5 times speed enhancement. When compared to the GPU-accelerated FFT based-CS SD OCT, it shows smaller background noise and less side lobes while eliminating the need for the cumbersome k-space grid filling and the k-linear calibration procedure. Finally, we demonstrated that by using a conventional desktop computer architecture having three GPUs, real-time B-mode imaging can be obtained in excess of 30 fps for the GPU-accelerated NUFFT based CS SD OCT with frame size 2048(axial) × 1,000(lateral).

Nonuniform multiview color texture mapping of image sequence and three-dimensional model for faded cultural relics with sift feature points

NASA Astrophysics Data System (ADS)

Li, Na; Gong, Xingyu; Li, Hongan; Jia, Pengtao

2018-01-01

For faded relics, such as Terracotta Army, the 2D-3D registration between an optical camera and point cloud model is an important part for color texture reconstruction and further applications. This paper proposes a nonuniform multiview color texture mapping for the image sequence and the three-dimensional (3D) model of point cloud collected by Handyscan3D. We first introduce nonuniform multiview calibration, including the explanation of its algorithm principle and the analysis of its advantages. We then establish transformation equations based on sift feature points for the multiview image sequence. At the same time, the selection of nonuniform multiview sift feature points is introduced in detail. Finally, the solving process of the collinear equations based on multiview perspective projection is given with three steps and the flowchart. In the experiment, this method is applied to the color reconstruction of the kneeling figurine, Tangsancai lady, and general figurine. These results demonstrate that the proposed method provides an effective support for the color reconstruction of the faded cultural relics and be able to improve the accuracy of 2D-3D registration between the image sequence and the point cloud model.

Automated support tool for variable rate irrigation prescriptions

USDA-ARS?s Scientific Manuscript database

Variable rate irrigation (VRI) enables center pivot management to better meet non-uniform water and fertility needs. This is accomplished through correctly matching system water application with spatial and temporal variability within the field. A computer program was modified to accommodate GIS dat...

A NONUNIFORM CYLINDRICAL FDTD ALGORITHM WITH IMPROVED PML AND QUASI-PML ABSORBING BOUNDARY CONDITIONS. (R825225)

EPA Science Inventory

The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

Investigation of BPF algorithm in cone-beam CT with 2D general trajectories.

PubMed

Zou, Jing; Gui, Jianbao; Rong, Junyan; Hu, Zhanli; Zhang, Qiyang; Xia, Dan

2012-01-01

A mathematical derivation was conducted to illustrate that exact 3D image reconstruction could be achieved for z-homogeneous phantoms from data acquired with 2D general trajectories using the back projection filtration (BPF) algorithm. The conclusion was verified by computer simulation and experimental result with a circular scanning trajectory. Furthermore, the effect of the non-uniform degree along z-axis of the phantoms on the accuracy of the 3D reconstruction by BPF algorithm was investigated by numerical simulation with a gradual-phantom and a disk-phantom. The preliminary result showed that the performance of BPF algorithm improved with the z-axis homogeneity of the scanned object.

Dual-energy digital mammography for calcification imaging: scatter and nonuniformity corrections.

PubMed

Kappadath, S Cheenu; Shaw, Chris C

2005-11-01

Mammographic images of small calcifications, which are often the earliest signs of breast cancer, can be obscured by overlapping fibroglandular tissue. We have developed and implemented a dual-energy digital mammography (DEDM) technique for calcification imaging under full-field imaging conditions using a commercially available aSi:H/CsI:Tl flat-panel based digital mammography system. The low- and high-energy images were combined using a nonlinear mapping function to cancel the tissue structures and generate the dual-energy (DE) calcification images. The total entrance-skin exposure and mean-glandular dose from the low- and high-energy images were constrained so that they were similar to screening-examination levels. To evaluate the DE calcification image, we designed a phantom using calcium carbonate crystals to simulate calcifications of various sizes (212-425 microm) overlaid with breast-tissue-equivalent material 5 cm thick with a continuously varying glandular-tissue ratio from 0% to 100%. We report on the effects of scatter radiation and nonuniformity in x-ray intensity and detector response on the DE calcification images. The nonuniformity was corrected by normalizing the low- and high-energy images with full-field reference images. Correction of scatter in the low- and high-energy images significantly reduced the background signal in the DE calcification image. Under the current implementation of DEDM, utilizing the mammography system and dose level tested, calcifications in the 300-355 microm size range were clearly visible in DE calcification images. Calcification threshold sizes decreased to the 250-280 microm size range when the visibility criteria were lowered to barely visible. Calcifications smaller than approximately 250 microm were usually not visible in most cases. The visibility of calcifications with our DEDM imaging technique was limited by quantum noise, not system noise.

Dual-energy digital mammography for calcification imaging: Scatter and nonuniformity corrections

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kappadath, S. Cheenu; Shaw, Chris C.

Mammographic images of small calcifications, which are often the earliest signs of breast cancer, can be obscured by overlapping fibroglandular tissue. We have developed and implemented a dual-energy digital mammography (DEDM) technique for calcification imaging under full-field imaging conditions using a commercially available aSi:H/CsI:Tl flat-panel based digital mammography system. The low- and high-energy images were combined using a nonlinear mapping function to cancel the tissue structures and generate the dual-energy (DE) calcification images. The total entrance-skin exposure and mean-glandular dose from the low- and high-energy images were constrained so that they were similar to screening-examination levels. To evaluate the DEmore » calcification image, we designed a phantom using calcium carbonate crystals to simulate calcifications of various sizes (212-425 {mu}m) overlaid with breast-tissue-equivalent material 5 cm thick with a continuously varying glandular-tissue ratio from 0% to 100%. We report on the effects of scatter radiation and nonuniformity in x-ray intensity and detector response on the DE calcification images. The nonuniformity was corrected by normalizing the low- and high-energy images with full-field reference images. Correction of scatter in the low- and high-energy images significantly reduced the background signal in the DE calcification image. Under the current implementation of DEDM, utilizing the mammography system and dose level tested, calcifications in the 300-355 {mu}m size range were clearly visible in DE calcification images. Calcification threshold sizes decreased to the 250-280 {mu}m size range when the visibility criteria were lowered to barely visible. Calcifications smaller than {approx}250 {mu}m were usually not visible in most cases. The visibility of calcifications with our DEDM imaging technique was limited by quantum noise, not system noise.« less

A fast Poisson solver for unsteady incompressible Navier-Stokes equations on the half-staggered grid

NASA Technical Reports Server (NTRS)

Golub, G. H.; Huang, L. C.; Simon, H.; Tang, W. -P.

1995-01-01

In this paper, a fast Poisson solver for unsteady, incompressible Navier-Stokes equations with finite difference methods on the non-uniform, half-staggered grid is presented. To achieve this, new algorithms for diagonalizing a semi-definite pair are developed. Our fast solver can also be extended to the three dimensional case. The motivation and related issues in using this second kind of staggered grid are also discussed. Numerical testing has indicated the effectiveness of this algorithm.

LWIR pupil imaging and prospects for background compensation

NASA Astrophysics Data System (ADS)

LeVan, Paul; Sakoglu, Ünal; Stegall, Mark; Pierce, Greg

2015-08-01

A previous paper described LWIR Pupil Imaging with a sensitive, low-flux focal plane array, and behavior of this type of system for higher flux operations as understood at the time. We continue this investigation, and report on a more detailed characterization of the system over a broad range of pixel fluxes. This characterization is then shown to enable non-uniformity correction over the flux range, using a standard approach. Since many commercial tracking platforms include a "guider port" that accepts pulse width modulation (PWM) error signals, we have also investigated a variation on the use of this port to "dither" the tracking platform in synchronization with the continuous collection of infrared images. The resulting capability has a broad range of applications that extend from generating scene motion in the laboratory for quantifying performance of "realtime, scene-based non-uniformity correction" approaches, to effectuating subtraction of bright backgrounds by alternating viewing aspect between a point source and adjacent, source-free backgrounds.

Experimental testing of four correction algorithms for the forward scattering spectrometer probe

NASA Technical Reports Server (NTRS)

Hovenac, Edward A.; Oldenburg, John R.; Lock, James A.

1992-01-01

Three number density correction algorithms and one size distribution correction algorithm for the Forward Scattering Spectrometer Probe (FSSP) were compared with data taken by the Phase Doppler Particle Analyzer (PDPA) and an optical number density measuring instrument (NDMI). Of the three number density correction algorithms, the one that compared best to the PDPA and NDMI data was the algorithm developed by Baumgardner, Strapp, and Dye (1985). The algorithm that corrects sizing errors in the FSSP that was developed by Lock and Hovenac (1989) was shown to be within 25 percent of the Phase Doppler measurements at number densities as high as 3000/cc.

Statistical Analysis of the LMS and Modified Stochastic Gradient Algorithms

DTIC Science & Technology

1989-05-14

siloare of the input data and incorporated directly Into recurisive descriptions and/or nonuniform weighted mov- the altorithmn ar, a data-dependent time...houlsotaion- are al.~, ii%ed tito rteod the welitht tranotienitwbhav- These results are a measure of how rapidly the algo- lair . The Mrnuation,; aalggeut

Midwave Infrared Imaging Fourier Transform Spectrometry of Combustion Plumes

DTIC Science & Technology

2009-09-01

nonuniformity by spatially-smoothing the image cube. The algorithm was applied to a LWIR hyperspectral image of simultaneous release of CHF3 (trifluo...99 43. A series of LWIR thermal images of the explosive detonation release of MeS...Abbreviation Page IEDs Improvised Explosive Devices . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 LWIR longwave infrared

AN ACCURATE AND EFFICIENT ALGORITHM FOR NUMERICAL SIMULATION OF CONDUCTION-TYPE PROBLEMS. (R824801)

EPA Science Inventory

Abstract

A modification of the finite analytic numerical method for conduction-type (diffusion) problems is presented. The finite analytic discretization scheme is derived by means of the Fourier series expansion for the most general case of nonuniform grid and variabl...

Calibration of EBT2 film by the PDD method with scanner non-uniformity correction.

PubMed

Chang, Liyun; Chui, Chen-Shou; Ding, Hueisch-Jy; Hwang, Ing-Ming; Ho, Sheng-Yow

2012-09-21

The EBT2 film together with a flatbed scanner is a convenient dosimetry QA tool for verification of clinical radiotherapy treatments. However, it suffers from a relatively high degree of uncertainty and a tedious film calibration process for every new lot of films, including cutting the films into several small pieces, exposing with different doses, restoring them back and selecting the proper region of interest (ROI) for each piece for curve fitting. In this work, we present a percentage depth dose (PDD) method that can accurately calibrate the EBT2 film together with the scanner non-uniformity correction and provide an easy way to perform film dosimetry. All films were scanned before and after the irradiation in one of the two homemade 2 mm thick acrylic frames (one portrait and the other landscape), which was located at a fixed position on the scan bed of an Epson 10 000XL scanner. After the pre-irradiated scan, the film was placed parallel to the beam central axis and sandwiched between six polystyrene plates (5 cm thick each), followed by irradiation of a 20 × 20 cm² 6 MV photon beam. Two different beams on times were used on two different films to deliver a dose to the film ranging from 32 to 320 cGy. After the post-irradiated scan, the net optical densities for a total of 235 points on the beam central axis on the films were auto-extracted and compared with the corresponding depth doses that were calculated through the measurement of a 0.6 cc farmer chamber and the related PDD table to perform the curve fitting. The portrait film location was selected for routine calibration, since the central beam axis on the film is parallel to the scanning direction, where non-uniformity correction is not needed (Ferreira et al 2009 Phys. Med. Biol. 54 1073-85). To perform the scanner non-uniformity calibration, the cross-beam profiles of the film were analysed by referencing the measured profiles from a Profiler™. Finally, to verify our method, the films were exposed to 60° physical wedge fields and the compositive fields, and their relative dose profiles were compared with those from the water phantom measurement. The fitting uncertainty was less than 0.5% due to the many calibration points, and the overall calibration uncertainty was within 3% for doses above 50 cGy, when the average of four films were used for the calibration. According to our study, the non-uniformity calibration factor was found to be independent of the given dose for the EBT2 film and the relative dose differences between the profiles measured by the film and the Profiler were within 1.5% after applying the non-uniformity correction. For the verification tests, the relative dose differences between the measurements by films and in the water phantom, when the average of three films were used, were generally within 3% for the 60° wedge fields and compositive fields, respectively. In conclusion, our method is convenient, time-saving and cost-effective, since no film cutting is needed and only two films with two exposures are needed.

Pixel-Wise-Inter/Intra-Channel Color and Luminance Uniformity Corrections for Multi-Channel Projection Displays

DTIC Science & Technology

2016-08-11

Journal Article 3. DATES COVERED (From – To) Jan 2015 – Dec 2015 4. TITLE AND SUBTITLE PIXEL-WISE INTER/INTRA-CHANNEL COLOR & LUMINANCE UNIFORMITY...Conference Dayton, Ohio – 28-29 June 2016 14. ABSTRACT Inter- and intra-channel color and luminance are generally non-uniform in multi-channel...projection display systems. Several methods have been proposed to correct for both inter- and intra-channel color and luminance variation in multi-channel

Characterization and assessment of different algorithms for retrieval of mean square slopes from GNSS-R measurements

NASA Astrophysics Data System (ADS)

Clarizia, Maria Paola; Ruf, Christopher; Gommenginger, Christine

2013-04-01

Global Navigation Satellite System-Reflectometry (GNSS-R) exploits signals of opportunity from navigation constellations (e.g. GPS, GLONASS, Galileo), scattered by the surface of the ocean, to retrieve the surface wind and wave fields. GNSS-R represents a true innovation in remote sensing, and it is receiving a growing interest from the scientific community. Its main advantages lie in the dense space-time sampling capabilities, the ability of L-band signals to penetrate well through rain, and the possibility of simple, low-cost/low-power GNSS receivers. These recognized strengths of GNSS-R recently led to the approval of the NASA EV-2 Cyclone Global Navigation Satellite System (CYGNSS), a spaceborne mission focused on tropical cyclone (TC) inner core process studies. CYGNSS attempts to resolve the problem of inadequate observations and modeling of the inner core, which represents the principal deficiency with current TC intensity forecasts, and which can be overcome with GNSS-R. The present study focuses on the information content about the sea surface roughness and wind speed, that is contained in spaceborne GNSS-R Delay-Doppler Maps (DDMs). A number of algorithms for the retrieval of Mean Square Slopes (MSS) - representative of the surface roughness - are analyzed. These include existing algorithms based on least-square fitting procedures (e.g. 2D least-square fitting of DDMs, using the Zavorotny-Voronovich DDM theoretical model), or based on direct observables (e.g. DDM volume), as well as "new" algorithms, which make use of waveforms derived from the DDM, which have thusfar been unexploited (e.g. integrated delay and Doppler waveforms). The analysis is carried out using simulated DDMs generated by the mature forward model end-to-end simulator developed for CYGNSS. A comparison of the results obtained for different retrieval algorithms will be presented. In particular, the performance of the algorithms considered is investigated and characterized for the case of significant non-uniform wind field across the scattering area, such as will be encountered in and near tropical cyclones. The impact of each algorithm, as well as of other parameters (e.g. the extent of the DDM), on the sensitivity of the results to non-uniform winds will be presented. The results are directly relevant to CYGNSS, where the ultimate objective is to produce standard gridded maps of retrieved wind fields from raw DDM measurements. The value of this research is twofold, in that it addresses the choice of the best algorithms to retrieve MSS and ultimately wind speed in extreme and non-uniform wind conditions, and also provides a first assessment of the data compression requirements and strategies that will be applied to DDMs for the CYGNSS mission.

Fast Steerable Principal Component Analysis

PubMed Central

Zhao, Zhizhen; Shkolnisky, Yoel; Singer, Amit

2016-01-01

Cryo-electron microscopy nowadays often requires the analysis of hundreds of thousands of 2-D images as large as a few hundred pixels in each direction. Here, we introduce an algorithm that efficiently and accurately performs principal component analysis (PCA) for a large set of 2-D images, and, for each image, the set of its uniform rotations in the plane and their reflections. For a dataset consisting of n images of size L × L pixels, the computational complexity of our algorithm is O(nL3 + L4), while existing algorithms take O(nL4). The new algorithm computes the expansion coefficients of the images in a Fourier–Bessel basis efficiently using the nonuniform fast Fourier transform. We compare the accuracy and efficiency of the new algorithm with traditional PCA and existing algorithms for steerable PCA. PMID:27570801

Patient-specific dosimetry based on quantitative SPECT imaging and 3D-DFT convolution

DOE Office of Scientific and Technical Information (OSTI.GOV)

Akabani, G.; Hawkins, W.G.; Eckblade, M.B.

1999-01-01

The objective of this study was to validate the use of a 3-D discrete Fourier Transform (3D-DFT) convolution method to carry out the dosimetry for I-131 for soft tissues in radioimmunotherapy procedures. To validate this convolution method, mathematical and physical phantoms were used as a basis of comparison with Monte Carlo transport (MCT) calculations which were carried out using the EGS4 system code. The mathematical phantom consisted of a sphere containing uniform and nonuniform activity distributions. The physical phantom consisted of a cylinder containing uniform and nonuniform activity distributions. Quantitative SPECT reconstruction was carried out using the Circular Harmonic Transformmore » (CHT) algorithm.« less

Joint volumetric extraction and enhancement of vasculature from low-SNR 3-D fluorescence microscopy images.

PubMed

Almasi, Sepideh; Ben-Zvi, Ayal; Lacoste, Baptiste; Gu, Chenghua; Miller, Eric L; Xu, Xiaoyin

2017-03-01

To simultaneously overcome the challenges imposed by the nature of optical imaging characterized by a range of artifacts including space-varying signal to noise ratio (SNR), scattered light, and non-uniform illumination, we developed a novel method that segments the 3-D vasculature directly from original fluorescence microscopy images eliminating the need for employing pre- and post-processing steps such as noise removal and segmentation refinement as used with the majority of segmentation techniques. Our method comprises two initialization and constrained recovery and enhancement stages. The initialization approach is fully automated using features derived from bi-scale statistical measures and produces seed points robust to non-uniform illumination, low SNR, and local structural variations. This algorithm achieves the goal of segmentation via design of an iterative approach that extracts the structure through voting of feature vectors formed by distance, local intensity gradient, and median measures. Qualitative and quantitative analysis of the experimental results obtained from synthetic and real data prove the effcacy of this method in comparison to the state-of-the-art enhancing-segmenting methods. The algorithmic simplicity, freedom from having a priori probabilistic information about the noise, and structural definition gives this algorithm a wide potential range of applications where i.e. structural complexity significantly complicates the segmentation problem.

Skeletonization with hollow detection on gray image by gray weighted distance transform

NASA Astrophysics Data System (ADS)

Bhattacharya, Prabir; Qian, Kai; Cao, Siqi; Qian, Yi

1998-10-01

A skeletonization algorithm that could be used to process non-uniformly distributed gray-scale images with hollows was presented. This algorithm is based on the Gray Weighted Distance Transformation. The process includes a preliminary phase of investigation in the hollows in the gray-scale image, whether these hollows are considered as topological constraints for the skeleton structure depending on their statistically significant depth. We then extract the resulting skeleton that has certain meaningful information for understanding the object in the image. This improved algorithm can overcome the possible misinterpretation of some complicated images in the extracted skeleton, especially in images with asymmetric hollows and asymmetric features. This algorithm can be executed on a parallel machine as all the operations are executed in local. Some examples are discussed to illustrate the algorithm.

A new unequal-weighted triple-frequency first order ionosphere correction algorithm and its application in COMPASS

NASA Astrophysics Data System (ADS)

Liu, WenXiang; Mou, WeiHua; Wang, FeiXue

2012-03-01

As the introduction of triple-frequency signals in GNSS, the multi-frequency ionosphere correction technology has been fast developing. References indicate that the triple-frequency second order ionosphere correction is worse than the dual-frequency first order ionosphere correction because of the larger noise amplification factor. On the assumption that the variances of three frequency pseudoranges were equal, other references presented the triple-frequency first order ionosphere correction, which proved worse or better than the dual-frequency first order correction in different situations. In practice, the PN code rate, carrier-to-noise ratio, parameters of DLL and multipath effect of each frequency are not the same, so three frequency pseudorange variances are unequal. Under this consideration, a new unequal-weighted triple-frequency first order ionosphere correction algorithm, which minimizes the variance of the pseudorange ionosphere-free combination, is proposed in this paper. It is found that conventional dual-frequency first-order correction algorithms and the equal-weighted triple-frequency first order correction algorithm are special cases of the new algorithm. A new pseudorange variance estimation method based on the three carrier combination is also introduced. Theoretical analysis shows that the new algorithm is optimal. The experiment with COMPASS G3 satellite observations demonstrates that the ionosphere-free pseudorange combination variance of the new algorithm is smaller than traditional multi-frequency correction algorithms.

Atmospheric Correction Algorithm for Hyperspectral Remote Sensing of Ocean Color from Space

DTIC Science & Technology

2000-02-20

Existing atmospheric correction algorithms for multichannel remote sensing of ocean color from space were designed for retrieving water-leaving...atmospheric correction algorithm for hyperspectral remote sensing of ocean color with the near-future Coastal Ocean Imaging Spectrometer. The algorithm uses

Rapid sampling of stochastic displacements in Brownian dynamics simulations

NASA Astrophysics Data System (ADS)

Fiore, Andrew M.; Balboa Usabiaga, Florencio; Donev, Aleksandar; Swan, James W.

2017-03-01

We present a new method for sampling stochastic displacements in Brownian Dynamics (BD) simulations of colloidal scale particles. The method relies on a new formulation for Ewald summation of the Rotne-Prager-Yamakawa (RPY) tensor, which guarantees that the real-space and wave-space contributions to the tensor are independently symmetric and positive-definite for all possible particle configurations. Brownian displacements are drawn from a superposition of two independent samples: a wave-space (far-field or long-ranged) contribution, computed using techniques from fluctuating hydrodynamics and non-uniform fast Fourier transforms; and a real-space (near-field or short-ranged) correction, computed using a Krylov subspace method. The combined computational complexity of drawing these two independent samples scales linearly with the number of particles. The proposed method circumvents the super-linear scaling exhibited by all known iterative sampling methods applied directly to the RPY tensor that results from the power law growth of the condition number of tensor with the number of particles. For geometrically dense microstructures (fractal dimension equal three), the performance is independent of volume fraction, while for tenuous microstructures (fractal dimension less than three), such as gels and polymer solutions, the performance improves with decreasing volume fraction. This is in stark contrast with other related linear-scaling methods such as the force coupling method and the fluctuating immersed boundary method, for which performance degrades with decreasing volume fraction. Calculations for hard sphere dispersions and colloidal gels are illustrated and used to explore the role of microstructure on performance of the algorithm. In practice, the logarithmic part of the predicted scaling is not observed and the algorithm scales linearly for up to 4 ×106 particles, obtaining speed ups of over an order of magnitude over existing iterative methods, and making the cost of computing Brownian displacements comparable to the cost of computing deterministic displacements in BD simulations. A high-performance implementation employing non-uniform fast Fourier transforms implemented on graphics processing units and integrated with the software package HOOMD-blue is used for benchmarking.

Development of PET projection data correction algorithm

NASA Astrophysics Data System (ADS)

Bazhanov, P. V.; Kotina, E. D.

2017-12-01

Positron emission tomography is modern nuclear medicine method used in metabolism and internals functions examinations. This method allows to diagnosticate treatments on their early stages. Mathematical algorithms are widely used not only for images reconstruction but also for PET data correction. In this paper random coincidences and scatter correction algorithms implementation are considered, as well as algorithm of PET projection data acquisition modeling for corrections verification.

An efficient algorithm for automatic phase correction of NMR spectra based on entropy minimization

NASA Astrophysics Data System (ADS)

Chen, Li; Weng, Zhiqiang; Goh, LaiYoong; Garland, Marc

2002-09-01

A new algorithm for automatic phase correction of NMR spectra based on entropy minimization is proposed. The optimal zero-order and first-order phase corrections for a NMR spectrum are determined by minimizing entropy. The objective function is constructed using a Shannon-type information entropy measure. Entropy is defined as the normalized derivative of the NMR spectral data. The algorithm has been successfully applied to experimental 1H NMR spectra. The results of automatic phase correction are found to be comparable to, or perhaps better than, manual phase correction. The advantages of this automatic phase correction algorithm include its simple mathematical basis and the straightforward, reproducible, and efficient optimization procedure. The algorithm is implemented in the Matlab program ACME—Automated phase Correction based on Minimization of Entropy.

Multi-exposure high dynamic range image synthesis with camera shake correction

NASA Astrophysics Data System (ADS)

Li, Xudong; Chen, Yongfu; Jiang, Hongzhi; Zhao, Huijie

2017-10-01

Machine vision plays an important part in industrial online inspection. Owing to the nonuniform illuminance conditions and variable working distances, the captured image tends to be over-exposed or under-exposed. As a result, when processing the image such as crack inspection, the algorithm complexity and computing time increase. Multiexposure high dynamic range (HDR) image synthesis is used to improve the quality of the captured image, whose dynamic range is limited. Inevitably, camera shake will result in ghost effect, which blurs the synthesis image to some extent. However, existed exposure fusion algorithms assume that the input images are either perfectly aligned or captured in the same scene. These assumptions limit the application. At present, widely used registration based on Scale Invariant Feature Transform (SIFT) is usually time consuming. In order to rapidly obtain a high quality HDR image without ghost effect, we come up with an efficient Low Dynamic Range (LDR) images capturing approach and propose a registration method based on ORiented Brief (ORB) and histogram equalization which can eliminate the illumination differences between the LDR images. The fusion is performed after alignment. The experiment results demonstrate that the proposed method is robust to illumination changes and local geometric distortion. Comparing with other exposure fusion methods, our method is more efficient and can produce HDR images without ghost effect by registering and fusing four multi-exposure images.

Nonuniform code concatenation for universal fault-tolerant quantum computing

NASA Astrophysics Data System (ADS)

Nikahd, Eesa; Sedighi, Mehdi; Saheb Zamani, Morteza

2017-09-01

Using transversal gates is a straightforward and efficient technique for fault-tolerant quantum computing. Since transversal gates alone cannot be computationally universal, they must be combined with other approaches such as magic state distillation, code switching, or code concatenation to achieve universality. In this paper we propose an alternative approach for universal fault-tolerant quantum computing, mainly based on the code concatenation approach proposed in [T. Jochym-O'Connor and R. Laflamme, Phys. Rev. Lett. 112, 010505 (2014), 10.1103/PhysRevLett.112.010505], but in a nonuniform fashion. The proposed approach is described based on nonuniform concatenation of the 7-qubit Steane code with the 15-qubit Reed-Muller code, as well as the 5-qubit code with the 15-qubit Reed-Muller code, which lead to two 49-qubit and 47-qubit codes, respectively. These codes can correct any arbitrary single physical error with the ability to perform a universal set of fault-tolerant gates, without using magic state distillation.

A Study of Multigrid Preconditioners Using Eigensystem Analysis

NASA Technical Reports Server (NTRS)

Roberts, Thomas W.; Swanson, R. C.

2005-01-01

The convergence properties of numerical schemes for partial differential equations are studied by examining the eigensystem of the discrete operator. This method of analysis is very general, and allows the effects of boundary conditions and grid nonuniformities to be examined directly. Algorithms for the Laplace equation and a two equation model hyperbolic system are examined.

Unclassified Publications of Lincoln Laboratory, 1 January - 31 December 1990. Volume 16

DTIC Science & Technology

1990-12-31

Apr. 1990 ADA223419 Hopped Communication Systems with Nonuniform Hopping Distributions 880 Bistatic Radar Cross Section of a Fenn, A.J. 2 May1990...EXPERIMENT JA-6241 MS-8424 LUNAR PERTURBATION MAXIMUM LIKELIHOOD ALGORITHM JA-6241 JA-6467 LWIR SPECTRAL BAND MAXIMUM LIKELIHOOD ESTIMATOR JA-6476 MS-8466

Fixed Pattern Noise pixel-wise linear correction for crime scene imaging CMOS sensor

NASA Astrophysics Data System (ADS)

Yang, Jie; Messinger, David W.; Dube, Roger R.; Ientilucci, Emmett J.

2017-05-01

Filtered multispectral imaging technique might be a potential method for crime scene documentation and evidence detection due to its abundant spectral information as well as non-contact and non-destructive nature. Low-cost and portable multispectral crime scene imaging device would be highly useful and efficient. The second generation crime scene imaging system uses CMOS imaging sensor to capture spatial scene and bandpass Interference Filters (IFs) to capture spectral information. Unfortunately CMOS sensors suffer from severe spatial non-uniformity compared to CCD sensors and the major cause is Fixed Pattern Noise (FPN). IFs suffer from "blue shift" effect and introduce spatial-spectral correlated errors. Therefore, Fixed Pattern Noise (FPN) correction is critical to enhance crime scene image quality and is also helpful for spatial-spectral noise de-correlation. In this paper, a pixel-wise linear radiance to Digital Count (DC) conversion model is constructed for crime scene imaging CMOS sensor. Pixel-wise conversion gain Gi,j and Dark Signal Non-Uniformity (DSNU) Zi,j are calculated. Also, conversion gain is divided into four components: FPN row component, FPN column component, defects component and effective photo response signal component. Conversion gain is then corrected to average FPN column and row components and defects component so that the sensor conversion gain is uniform. Based on corrected conversion gain and estimated image incident radiance from the reverse of pixel-wise linear radiance to DC model, corrected image spatial uniformity can be enhanced to 7 times as raw image, and the bigger the image DC value within its dynamic range, the better the enhancement.

Information-based management mode based on value network analysis for livestock enterprises

NASA Astrophysics Data System (ADS)

Liu, Haoqi; Lee, Changhoon; Han, Mingming; Su, Zhongbin; Padigala, Varshinee Anu; Shen, Weizheng

2018-01-01

With the development of computer and IT technologies, enterprise management has gradually become information-based management. Moreover, due to poor technical competence and non-uniform management, most breeding enterprises show a lack of organisation in data collection and management. In addition, low levels of efficiency result in increasing production costs. This paper adopts 'struts2' in order to construct an information-based management system for standardised and normalised management within the process of production in beef cattle breeding enterprises. We present a radio-frequency identification system by studying multiple-tag anti-collision via a dynamic grouping ALOHA algorithm. This algorithm is based on the existing ALOHA algorithm and uses an improved packet dynamic of this algorithm, which is characterised by a high-throughput rate. This new algorithm can reach a throughput 42% higher than that of the general ALOHA algorithm. With a change in the number of tags, the system throughput is relatively stable.

Solving a class of generalized fractional programming problems using the feasibility of linear programs.

PubMed

Shen, Peiping; Zhang, Tongli; Wang, Chunfeng

2017-01-01

This article presents a new approximation algorithm for globally solving a class of generalized fractional programming problems (P) whose objective functions are defined as an appropriate composition of ratios of affine functions. To solve this problem, the algorithm solves an equivalent optimization problem (Q) via an exploration of a suitably defined nonuniform grid. The main work of the algorithm involves checking the feasibility of linear programs associated with the interesting grid points. It is proved that the proposed algorithm is a fully polynomial time approximation scheme as the ratio terms are fixed in the objective function to problem (P), based on the computational complexity result. In contrast to existing results in literature, the algorithm does not require the assumptions on quasi-concavity or low-rank of the objective function to problem (P). Numerical results are given to illustrate the feasibility and effectiveness of the proposed algorithm.

Going from microscopic to macroscopic on nonuniform growing domains.

PubMed

Yates, Christian A; Baker, Ruth E; Erban, Radek; Maini, Philip K

2012-08-01

Throughout development, chemical cues are employed to guide the functional specification of underlying tissues while the spatiotemporal distributions of such chemicals can be influenced by the growth of the tissue itself. These chemicals, termed morphogens, are often modeled using partial differential equations (PDEs). The connection between discrete stochastic and deterministic continuum models of particle migration on growing domains was elucidated by Baker, Yates, and Erban [Bull. Math. Biol. 72, 719 (2010)] in which the migration of individual particles was modeled as an on-lattice position-jump process. We build on this work by incorporating a more physically reasonable description of domain growth. Instead of allowing underlying lattice elements to instantaneously double in size and divide, we allow incremental element growth and splitting upon reaching a predefined threshold size. Such a description of domain growth necessitates a nonuniform partition of the domain. We first demonstrate that an individual-based stochastic model for particle diffusion on such a nonuniform domain partition is equivalent to a PDE model of the same phenomenon on a nongrowing domain, providing the transition rates (which we derive) are chosen correctly and we partition the domain in the correct manner. We extend this analysis to the case where the domain is allowed to change in size, altering the transition rates as necessary. Through application of the master equation formalism we derive a PDE for particle density on this growing domain and corroborate our findings with numerical simulations.

Scene-based nonuniformity correction using local constant statistics.

PubMed

Zhang, Chao; Zhao, Wenyi

2008-06-01

In scene-based nonuniformity correction, the statistical approach assumes all possible values of the true-scene pixel are seen at each pixel location. This global-constant-statistics assumption does not distinguish fixed pattern noise from spatial variations in the average image. This often causes the "ghosting" artifacts in the corrected images since the existing spatial variations are treated as noises. We introduce a new statistical method to reduce the ghosting artifacts. Our method proposes a local-constant statistics that assumes that the temporal signal distribution is not constant at each pixel but is locally true. This considers statistically a constant distribution in a local region around each pixel but uneven distribution in a larger scale. Under the assumption that the fixed pattern noise concentrates in a higher spatial-frequency domain than the distribution variation, we apply a wavelet method to the gain and offset image of the noise and separate out the pattern noise from the spatial variations in the temporal distribution of the scene. We compare the results to the global-constant-statistics method using a clean sequence with large artificial pattern noises. We also apply the method to a challenging CCD video sequence and a LWIR sequence to show how effective it is in reducing noise and the ghosting artifacts.

Binary moving-blocker-based scatter correction in cone-beam computed tomography with width-truncated projections: proof of concept.

PubMed

Lee, Ho; Fahimian, Benjamin P; Xing, Lei

2017-03-21

This paper proposes a binary moving-blocker (BMB)-based technique for scatter correction in cone-beam computed tomography (CBCT). In concept, a beam blocker consisting of lead strips, mounted in front of the x-ray tube, moves rapidly in and out of the beam during a single gantry rotation. The projections are acquired in alternating phases of blocked and unblocked cone beams, where the blocked phase results in a stripe pattern in the width direction. To derive the scatter map from the blocked projections, 1D B-Spline interpolation/extrapolation is applied by using the detected information in the shaded regions. The scatter map of the unblocked projections is corrected by averaging two scatter maps that correspond to their adjacent blocked projections. The scatter-corrected projections are obtained by subtracting the corresponding scatter maps from the projection data and are utilized to generate the CBCT image by a compressed-sensing (CS)-based iterative reconstruction algorithm. Catphan504 and pelvis phantoms were used to evaluate the method's performance. The proposed BMB-based technique provided an effective method to enhance the image quality by suppressing scatter-induced artifacts, such as ring artifacts around the bowtie area. Compared to CBCT without a blocker, the spatial nonuniformity was reduced from 9.1% to 3.1%. The root-mean-square error of the CT numbers in the regions of interest (ROIs) was reduced from 30.2 HU to 3.8 HU. In addition to high resolution, comparable to that of the benchmark image, the CS-based reconstruction also led to a better contrast-to-noise ratio in seven ROIs. The proposed technique enables complete scatter-corrected CBCT imaging with width-truncated projections and allows reducing the acquisition time to approximately half. This work may have significant implications for image-guided or adaptive radiation therapy, where CBCT is often used.

Binary moving-blocker-based scatter correction in cone-beam computed tomography with width-truncated projections: proof of concept

NASA Astrophysics Data System (ADS)

Lee, Ho; Fahimian, Benjamin P.; Xing, Lei

2017-03-01

This paper proposes a binary moving-blocker (BMB)-based technique for scatter correction in cone-beam computed tomography (CBCT). In concept, a beam blocker consisting of lead strips, mounted in front of the x-ray tube, moves rapidly in and out of the beam during a single gantry rotation. The projections are acquired in alternating phases of blocked and unblocked cone beams, where the blocked phase results in a stripe pattern in the width direction. To derive the scatter map from the blocked projections, 1D B-Spline interpolation/extrapolation is applied by using the detected information in the shaded regions. The scatter map of the unblocked projections is corrected by averaging two scatter maps that correspond to their adjacent blocked projections. The scatter-corrected projections are obtained by subtracting the corresponding scatter maps from the projection data and are utilized to generate the CBCT image by a compressed-sensing (CS)-based iterative reconstruction algorithm. Catphan504 and pelvis phantoms were used to evaluate the method’s performance. The proposed BMB-based technique provided an effective method to enhance the image quality by suppressing scatter-induced artifacts, such as ring artifacts around the bowtie area. Compared to CBCT without a blocker, the spatial nonuniformity was reduced from 9.1% to 3.1%. The root-mean-square error of the CT numbers in the regions of interest (ROIs) was reduced from 30.2 HU to 3.8 HU. In addition to high resolution, comparable to that of the benchmark image, the CS-based reconstruction also led to a better contrast-to-noise ratio in seven ROIs. The proposed technique enables complete scatter-corrected CBCT imaging with width-truncated projections and allows reducing the acquisition time to approximately half. This work may have significant implications for image-guided or adaptive radiation therapy, where CBCT is often used.

Statistical photocalibration of photodetectors for radiometry without calibrated light sources

NASA Astrophysics Data System (ADS)

Yielding, Nicholas J.; Cain, Stephen C.; Seal, Michael D.

2018-01-01

Calibration of CCD arrays for identifying bad pixels and achieving nonuniformity correction is commonly accomplished using dark frames. This kind of calibration technique does not achieve radiometric calibration of the array since only the relative response of the detectors is computed. For this, a second calibration is sometimes utilized by looking at sources with known radiances. This process can be used to calibrate photodetectors as long as a calibration source is available and is well-characterized. A previous attempt at creating a procedure for calibrating a photodetector using the underlying Poisson nature of the photodetection required calculations of the skewness of the photodetector measurements. Reliance on the third moment of measurement meant that thousands of samples would be required in some cases to compute that moment. A photocalibration procedure is defined that requires only first and second moments of the measurements. The technique is applied to image data containing a known light source so that the accuracy of the technique can be surmised. It is shown that the algorithm can achieve accuracy of nearly 2.7% of the predicted number of photons using only 100 frames of image data.

Influence of the partial volume correction method on 18F-fluorodeoxyglucose brain kinetic modelling from dynamic PET images reconstructed with resolution model based OSEM

NASA Astrophysics Data System (ADS)

Bowen, Spencer L.; Byars, Larry G.; Michel, Christian J.; Chonde, Daniel B.; Catana, Ciprian

2013-10-01

Kinetic parameters estimated from dynamic 18F-fluorodeoxyglucose (18F-FDG) PET acquisitions have been used frequently to assess brain function in humans. Neglecting partial volume correction (PVC) for a dynamic series has been shown to produce significant bias in model estimates. Accurate PVC requires a space-variant model describing the reconstructed image spatial point spread function (PSF) that accounts for resolution limitations, including non-uniformities across the field of view due to the parallax effect. For ordered subsets expectation maximization (OSEM), image resolution convergence is local and influenced significantly by the number of iterations, the count density, and background-to-target ratio. As both count density and background-to-target values for a brain structure can change during a dynamic scan, the local image resolution may also concurrently vary. When PVC is applied post-reconstruction the kinetic parameter estimates may be biased when neglecting the frame-dependent resolution. We explored the influence of the PVC method and implementation on kinetic parameters estimated by fitting 18F-FDG dynamic data acquired on a dedicated brain PET scanner and reconstructed with and without PSF modelling in the OSEM algorithm. The performance of several PVC algorithms was quantified with a phantom experiment, an anthropomorphic Monte Carlo simulation, and a patient scan. Using the last frame reconstructed image only for regional spread function (RSF) generation, as opposed to computing RSFs for each frame independently, and applying perturbation geometric transfer matrix PVC with PSF based OSEM produced the lowest magnitude bias kinetic parameter estimates in most instances, although at the cost of increased noise compared to the PVC methods utilizing conventional OSEM. Use of the last frame RSFs for PVC with no PSF modelling in the OSEM algorithm produced the lowest bias in cerebral metabolic rate of glucose estimates, although by less than 5% in most cases compared to the other PVC methods. The results indicate that the PVC implementation and choice of PSF modelling in the reconstruction can significantly impact model parameters.

Influence of the partial volume correction method on (18)F-fluorodeoxyglucose brain kinetic modelling from dynamic PET images reconstructed with resolution model based OSEM.

PubMed

Bowen, Spencer L; Byars, Larry G; Michel, Christian J; Chonde, Daniel B; Catana, Ciprian

2013-10-21

Kinetic parameters estimated from dynamic (18)F-fluorodeoxyglucose ((18)F-FDG) PET acquisitions have been used frequently to assess brain function in humans. Neglecting partial volume correction (PVC) for a dynamic series has been shown to produce significant bias in model estimates. Accurate PVC requires a space-variant model describing the reconstructed image spatial point spread function (PSF) that accounts for resolution limitations, including non-uniformities across the field of view due to the parallax effect. For ordered subsets expectation maximization (OSEM), image resolution convergence is local and influenced significantly by the number of iterations, the count density, and background-to-target ratio. As both count density and background-to-target values for a brain structure can change during a dynamic scan, the local image resolution may also concurrently vary. When PVC is applied post-reconstruction the kinetic parameter estimates may be biased when neglecting the frame-dependent resolution. We explored the influence of the PVC method and implementation on kinetic parameters estimated by fitting (18)F-FDG dynamic data acquired on a dedicated brain PET scanner and reconstructed with and without PSF modelling in the OSEM algorithm. The performance of several PVC algorithms was quantified with a phantom experiment, an anthropomorphic Monte Carlo simulation, and a patient scan. Using the last frame reconstructed image only for regional spread function (RSF) generation, as opposed to computing RSFs for each frame independently, and applying perturbation geometric transfer matrix PVC with PSF based OSEM produced the lowest magnitude bias kinetic parameter estimates in most instances, although at the cost of increased noise compared to the PVC methods utilizing conventional OSEM. Use of the last frame RSFs for PVC with no PSF modelling in the OSEM algorithm produced the lowest bias in cerebral metabolic rate of glucose estimates, although by less than 5% in most cases compared to the other PVC methods. The results indicate that the PVC implementation and choice of PSF modelling in the reconstruction can significantly impact model parameters.

Finite element concepts in computational aerodynamics

NASA Technical Reports Server (NTRS)

Baker, A. J.

1978-01-01

Finite element theory was employed to establish an implicit numerical solution algorithm for the time averaged unsteady Navier-Stokes equations. Both the multidimensional and a time-split form of the algorithm were considered, the latter of particular interest for problem specification on a regular mesh. A Newton matrix iteration procedure is outlined for solving the resultant nonlinear algebraic equation systems. Multidimensional discretization procedures are discussed with emphasis on automated generation of specific nonuniform solution grids and accounting of curved surfaces. The time-split algorithm was evaluated with regards to accuracy and convergence properties for hyperbolic equations on rectangular coordinates. An overall assessment of the viability of the finite element concept for computational aerodynamics is made.

Random noise attenuation of non-uniformly sampled 3D seismic data along two spatial coordinates using non-equispaced curvelet transform

NASA Astrophysics Data System (ADS)

Zhang, Hua; Yang, Hui; Li, Hongxing; Huang, Guangnan; Ding, Zheyi

2018-04-01

The attenuation of random noise is important for improving the signal to noise ratio (SNR). However, the precondition for most conventional denoising methods is that the noisy data must be sampled on a uniform grid, making the conventional methods unsuitable for non-uniformly sampled data. In this paper, a denoising method capable of regularizing the noisy data from a non-uniform grid to a specified uniform grid is proposed. Firstly, the denoising method is performed for every time slice extracted from the 3D noisy data along the source and receiver directions, then the 2D non-equispaced fast Fourier transform (NFFT) is introduced in the conventional fast discrete curvelet transform (FDCT). The non-equispaced fast discrete curvelet transform (NFDCT) can be achieved based on the regularized inversion of an operator that links the uniformly sampled curvelet coefficients to the non-uniformly sampled noisy data. The uniform curvelet coefficients can be calculated by using the inversion algorithm of the spectral projected-gradient for ℓ1-norm problems. Then local threshold factors are chosen for the uniform curvelet coefficients for each decomposition scale, and effective curvelet coefficients are obtained respectively for each scale. Finally, the conventional inverse FDCT is applied to the effective curvelet coefficients. This completes the proposed 3D denoising method using the non-equispaced curvelet transform in the source-receiver domain. The examples for synthetic data and real data reveal the effectiveness of the proposed approach in applications to noise attenuation for non-uniformly sampled data compared with the conventional FDCT method and wavelet transformation.

Conservative algorithms for non-Maxwellian plasma kinetics

DOE PAGES

Le, Hai P.; Cambier, Jean -Luc

2017-12-08

Here, we present a numerical model and a set of conservative algorithms for Non-Maxwellian plasma kinetics with inelastic collisions. These algorithms self-consistently solve for the time evolution of an isotropic electron energy distribution function interacting with an atomic state distribution function of an arbitrary number of levels through collisional excitation, deexcitation, as well as ionization and recombination. Electron-electron collisions, responsible for thermalization of the electron distribution, are also included in the model. The proposed algorithms guarantee mass/charge and energy conservation in a single step, and is applied to the case of non-uniform gridding of the energy axis in the phasemore » space of the electron distribution function. Numerical test cases are shown to demonstrate the accuracy of the method and its conservation properties.« less

Comparing a Coevolutionary Genetic Algorithm for Multiobjective Optimization

NASA Technical Reports Server (NTRS)

Lohn, Jason D.; Kraus, William F.; Haith, Gary L.; Clancy, Daniel (Technical Monitor)

2002-01-01

We present results from a study comparing a recently developed coevolutionary genetic algorithm (CGA) against a set of evolutionary algorithms using a suite of multiobjective optimization benchmarks. The CGA embodies competitive coevolution and employs a simple, straightforward target population representation and fitness calculation based on developmental theory of learning. Because of these properties, setting up the additional population is trivial making implementation no more difficult than using a standard GA. Empirical results using a suite of two-objective test functions indicate that this CGA performs well at finding solutions on convex, nonconvex, discrete, and deceptive Pareto-optimal fronts, while giving respectable results on a nonuniform optimization. On a multimodal Pareto front, the CGA finds a solution that dominates solutions produced by eight other algorithms, yet the CGA has poor coverage across the Pareto front.

Improved artificial bee colony algorithm for wavefront sensor-less system in free space optical communication

NASA Astrophysics Data System (ADS)

Niu, Chaojun; Han, Xiang'e.

2015-10-01

Adaptive optics (AO) technology is an effective way to alleviate the effect of turbulence on free space optical communication (FSO). A new adaptive compensation method can be used without a wave-front sensor. Artificial bee colony algorithm (ABC) is a population-based heuristic evolutionary algorithm inspired by the intelligent foraging behaviour of the honeybee swarm with the advantage of simple, good convergence rate, robust and less parameter setting. In this paper, we simulate the application of the improved ABC to correct the distorted wavefront and proved its effectiveness. Then we simulate the application of ABC algorithm, differential evolution (DE) algorithm and stochastic parallel gradient descent (SPGD) algorithm to the FSO system and analyze the wavefront correction capabilities by comparison of the coupling efficiency, the error rate and the intensity fluctuation in different turbulence before and after the correction. The results show that the ABC algorithm has much faster correction speed than DE algorithm and better correct ability for strong turbulence than SPGD algorithm. Intensity fluctuation can be effectively reduced in strong turbulence, but not so effective in week turbulence.

The effect of finite field size on classification and atmospheric correction

NASA Technical Reports Server (NTRS)

Kaufman, Y. J.; Fraser, R. S.

1981-01-01

The atmospheric effect on the upward radiance of sunlight scattered from the Earth-atmosphere system is strongly influenced by the contrasts between fields and their sizes. For a given atmospheric turbidity, the atmospheric effect on classification of surface features is much stronger for nonuniform surfaces than for uniform surfaces. Therefore, the classification accuracy of agricultural fields and urban areas is dependent not only on the optical characteristics of the atmosphere, but also on the size of the surface do not account for the nonuniformity of the surface have only a slight effect on the classification accuracy; in other cases the classification accuracy descreases. The radiances above finite fields were computed to simulate radiances measured by a satellite. A simulation case including 11 agricultural fields and four natural fields (water, soil, savanah, and forest) was used to test the effect of the size of the background reflectance and the optical thickness of the atmosphere on classification accuracy. It is concluded that new atmospheric correction methods, which take into account the finite size of the fields, have to be developed to improve significantly the classification accuracy.

Numerical investigation of the heat transfer of a ferrofluid inside a tube in the presence of a non-uniform magnetic field

NASA Astrophysics Data System (ADS)

Hariri, Saman; Mokhtari, Mojtaba; Gerdroodbary, M. Barzegar; Fallah, Keivan

2017-02-01

In this article, a three-dimensional numerical investigation is performed to study the effect of a magnetic field on a ferrofluid inside a tube. This study comprehensively analyzes the influence of a non-uniform magnetic field in the heat transfer of a tube while a ferrofluid (water with 0.86 vol% nanoparticles (Fe3O4) is let flow. The SIMPLEC algorithm is used for obtaining the flow and heat transfer inside the tube. The influence of various parameters, such as concentration of nanoparticles, intensity of the magnetic field, wire distance and Reynolds number, on the heat transfer is investigated. According to the obtained results, the presence of a non-uniform magnetic field significantly increases the Nusselt number (more than 300%) inside the tube. Also, the magnetic field induced by the parallel wire affects the average velocity of the ferrofluid and forms two strong eddies in the tube. Our findings show that the diffusion also raises as the concentration of the nanoparticle is increased.

Efficient conformational space exploration in ab initio protein folding simulation.

PubMed

Ullah, Ahammed; Ahmed, Nasif; Pappu, Subrata Dey; Shatabda, Swakkhar; Ullah, A Z M Dayem; Rahman, M Sohel

2015-08-01

Ab initio protein folding simulation largely depends on knowledge-based energy functions that are derived from known protein structures using statistical methods. These knowledge-based energy functions provide us with a good approximation of real protein energetics. However, these energy functions are not very informative for search algorithms and fail to distinguish the types of amino acid interactions that contribute largely to the energy function from those that do not. As a result, search algorithms frequently get trapped into the local minima. On the other hand, the hydrophobic-polar (HP) model considers hydrophobic interactions only. The simplified nature of HP energy function makes it limited only to a low-resolution model. In this paper, we present a strategy to derive a non-uniform scaled version of the real 20×20 pairwise energy function. The non-uniform scaling helps tackle the difficulty faced by a real energy function, whereas the integration of 20×20 pairwise information overcomes the limitations faced by the HP energy function. Here, we have applied a derived energy function with a genetic algorithm on discrete lattices. On a standard set of benchmark protein sequences, our approach significantly outperforms the state-of-the-art methods for similar models. Our approach has been able to explore regions of the conformational space which all the previous methods have failed to explore. Effectiveness of the derived energy function is presented by showing qualitative differences and similarities of the sampled structures to the native structures. Number of objective function evaluation in a single run of the algorithm is used as a comparison metric to demonstrate efficiency.

Improved bioluminescence and fluorescence reconstruction algorithms using diffuse optical tomography, normalized data, and optimized selection of the permissible source region

PubMed Central

Naser, Mohamed A.; Patterson, Michael S.

2011-01-01

Reconstruction algorithms are presented for two-step solutions of the bioluminescence tomography (BLT) and the fluorescence tomography (FT) problems. In the first step, a continuous wave (cw) diffuse optical tomography (DOT) algorithm is used to reconstruct the tissue optical properties assuming known anatomical information provided by x-ray computed tomography or other methods. Minimization problems are formed based on L1 norm objective functions, where normalized values for the light fluence rates and the corresponding Green’s functions are used. Then an iterative minimization solution shrinks the permissible regions where the sources are allowed by selecting points with higher probability to contribute to the source distribution. Throughout this process the permissible region shrinks from the entire object to just a few points. The optimum reconstructed bioluminescence and fluorescence distributions are chosen to be the results of the iteration corresponding to the permissible region where the objective function has its global minimum This provides efficient BLT and FT reconstruction algorithms without the need for a priori information about the bioluminescence sources or the fluorophore concentration. Multiple small sources and large distributed sources can be reconstructed with good accuracy for the location and the total source power for BLT and the total number of fluorophore molecules for the FT. For non-uniform distributed sources, the size and magnitude become degenerate due to the degrees of freedom available for possible solutions. However, increasing the number of data points by increasing the number of excitation sources can improve the accuracy of reconstruction for non-uniform fluorophore distributions. PMID:21326647

SU-F-R-32: Evaluation of MRI Acquisition Parameter Variations On Texture Feature Extraction Using ACR Phantom

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xie, Y; Wang, J; Wang, C

Purpose: To investigate the sensitivity of classic texture features to variations of MRI acquisition parameters. Methods: This study was performed on American College of Radiology (ACR) MRI Accreditation Program Phantom. MR imaging was acquired on a GE 750 3T scanner with XRM explain gradient, employing a T1-weighted images (TR/TE=500/20ms) with the following parameters as the reference standard: number of signal average (NEX) = 1, matrix size = 256×256, flip angle = 90°, slice thickness = 5mm. The effect of the acquisition parameters on texture features with and without non-uniformity correction were investigated respectively, while all the other parameters were keptmore » as reference standard. Protocol parameters were set as follows: (a). NEX = 0.5, 2 and 4; (b).Phase encoding steps = 128, 160 and 192; (c). Matrix size = 128×128, 192×192 and 512×512. 32 classic texture features were generated using the classic gray level run length matrix (GLRLM) and gray level co-occurrence matrix (GLCOM) from each image data set. Normalized range ((maximum-minimum)/mean) was calculated to determine variation among the scans with different protocol parameters. Results: For different NEX, 31 out of 32 texture features’ range are within 10%. For different phase encoding steps, 31 out of 32 texture features’ range are within 10%. For different acquisition matrix size without non-uniformity correction, 14 out of 32 texture features’ range are within 10%; for different acquisition matrix size with non-uniformity correction, 16 out of 32 texture features’ range are within 10%. Conclusion: Initial results indicated that those texture features that range within 10% are less sensitive to variations in T1-weighted MRI acquisition parameters. This might suggest that certain texture features might be more reliable to be used as potential biomarkers in MR quantitative image analysis.« less

Non-invasive vascular radial/circumferential strain imaging and wall shear rate estimation using video images of diagnostic ultrasound.

PubMed

Wan, Jinjin; He, Fangli; Zhao, Yongfeng; Zhang, Hongmei; Zhou, Xiaodong; Wan, Mingxi

2014-03-01

The aim of this work was to develop a convenient method for radial/circumferential strain imaging and shear rate estimation that could be used as a supplement to the current routine screening for carotid atherosclerosis using video images of diagnostic ultrasound. A reflection model-based correction for gray-scale non-uniform distribution was applied to B-mode video images before strain estimation to improve the accuracy of radial/circumferential strain imaging when applied to vessel transverse cross sections. The incremental and cumulative radial/circumferential strain images can then be calculated based on the displacement field between consecutive B-mode images. Finally, the transverse Doppler spectra acquired at different depths along the vessel diameter were used to construct the spatially matched instantaneous wall shear values in a cardiac cycle. Vessel phantom simulation results revealed that the signal-to-noise ratio and contrast-to-noise ratio of the radial and circumferential strain images were increased by 2.8 and 5.9 dB and by 2.3 and 4.4 dB, respectively, after non-uniform correction. Preliminary results for 17 patients indicated that the accuracy of radial/circumferential strain images was improved in the lateral direction after non-uniform correction. The peak-to-peak value of incremental strain and the maximum cumulative strain for calcified plaques are evidently lower than those for other plaque types, and the echolucent plaques had higher values, on average, than the mixed plaques. Moreover, low oscillating wall shear rate values, found near the plaque and stenosis regions, are closely related to plaque formation. In conclusion, the method described can provide additional valuable results as a supplement to the current routine ultrasound examination for carotid atherosclerosis and, therefore, has significant potential as a feasible screening method for atherosclerosis diagnosis in the future. Copyright © 2014 World Federation for Ultrasound in Medicine & Biology. Published by Elsevier Inc. All rights reserved.

Decomposed Photo Response Non-Uniformity for Digital Forensic Analysis

NASA Astrophysics Data System (ADS)

Li, Yue; Li, Chang-Tsun

The last few years have seen the applications of Photo Response Non-Uniformity noise (PRNU) - a unique stochastic fingerprint of image sensors, to various types of digital forensic investigations such as source device identification and integrity verification. In this work we proposed a new way of extracting PRNU noise pattern, called Decomposed PRNU (DPRNU), by exploiting the difference between the physical andartificial color components of the photos taken by digital cameras that use a Color Filter Array for interpolating artificial components from physical ones. Experimental results presented in this work have shown the superiority of the proposed DPRNU to the commonly used version. We also proposed a new performance metrics, Corrected Positive Rate (CPR) to evaluate the performance of the common PRNU and the proposed DPRNU.

Digital codec for real-time processing of broadcast quality video signals at 1.8 bits/pixel

NASA Technical Reports Server (NTRS)

Shalkhauser, Mary JO; Whyte, Wayne A., Jr.

1989-01-01

The authors present the hardware implementation of a digital television bandwidth compression algorithm which processes standard NTSC (National Television Systems Committee) composite color television signals and produces broadcast-quality video in real time at an average of 1.8 b/pixel. The sampling rate used with this algorithm results in 768 samples over the active portion of each video line by 512 active video lines per video frame. The algorithm is based on differential pulse code modulation (DPCM), but additionally utilizes a nonadaptive predictor, nonuniform quantizer, and multilevel Huffman coder to reduce the data rate substantially below that achievable with straight DPCM. The nonadaptive predictor and multilevel Huffman coder combine to set this technique apart from prior-art DPCM encoding algorithms. The authors describe the data compression algorithm and the hardware implementation of the codec and provide performance results.

A generalized muon trajectory estimation algorithm with energy loss for application to muon tomography

NASA Astrophysics Data System (ADS)

Chatzidakis, Stylianos; Liu, Zhengzhi; Hayward, Jason P.; Scaglione, John M.

2018-03-01

This work presents a generalized muon trajectory estimation algorithm to estimate the path of a muon in either uniform or nonuniform media. The use of cosmic ray muons in nuclear nonproliferation and safeguard verification applications has recently gained attention due to the non-intrusive and passive nature of the inspection, penetrating capabilities, as well as recent advances in detectors that measure position and direction of the individual muons before and after traversing the imaged object. However, muon image reconstruction techniques are limited in resolution due to low muon flux and the effects of multiple Coulomb scattering (MCS). Current reconstruction algorithms, e.g., point of closest approach (PoCA) or straight-line path (SLP), rely on overly simple assumptions for muon path estimation through the imaged object. For robust muon tomography, efficient and flexible physics-based algorithms are needed to model the MCS process and accurately estimate the most probable trajectory of a muon as it traverses an object. In the present work, the use of a Bayesian framework and a Gaussian approximation of MCS is explored for estimation of the most likely path of a cosmic ray muon traversing uniform or nonuniform media and undergoing MCS. The algorithm's precision is compared to Monte Carlo simulated muon trajectories. It was found that the algorithm is expected to be able to predict muon tracks to less than 1.5 mm root mean square (RMS) for 0.5 GeV muons and 0.25 mm RMS for 3 GeV muons, a 50% improvement compared to SLP and 15% improvement when compared to PoCA. Further, a 30% increase in useful muon flux was observed relative to PoCA. Muon track prediction improved for higher muon energies or smaller penetration depth where energy loss is not significant. The effect of energy loss due to ionization is investigated, and a linear energy loss relation that is easy to use is proposed.

A priori motion models for four-dimensional reconstruction in gated cardiac SPECT

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lalush, D.S.; Tsui, B.M.W.; Cui, Lin

1996-12-31

We investigate the benefit of incorporating a priori assumptions about cardiac motion in a fully four-dimensional (4D) reconstruction algorithm for gated cardiac SPECT. Previous work has shown that non-motion-specific 4D Gibbs priors enforcing smoothing in time and space can control noise while preserving resolution. In this paper, we evaluate methods for incorporating known heart motion in the Gibbs prior model. The new model is derived by assigning motion vectors to each 4D voxel, defining the movement of that volume of activity into the neighboring time frames. Weights for the Gibbs cliques are computed based on these {open_quotes}most likely{close_quotes} motion vectors.more » To evaluate, we employ the mathematical cardiac-torso (MCAT) phantom with a new dynamic heart model that simulates the beating and twisting motion of the heart. Sixteen realistically-simulated gated datasets were generated, with noise simulated to emulate a real Tl-201 gated SPECT study. Reconstructions were performed using several different reconstruction algorithms, all modeling nonuniform attenuation and three-dimensional detector response. These include ML-EM with 4D filtering, 4D MAP-EM without prior motion assumption, and 4D MAP-EM with prior motion assumptions. The prior motion assumptions included both the correct motion model and incorrect models. Results show that reconstructions using the 4D prior model can smooth noise and preserve time-domain resolution more effectively than 4D linear filters. We conclude that modeling of motion in 4D reconstruction algorithms can be a powerful tool for smoothing noise and preserving temporal resolution in gated cardiac studies.« less

Research and implementation of the algorithm for unwrapped and distortion correction basing on CORDIC for panoramic image

NASA Astrophysics Data System (ADS)

Zhang, Zhenhai; Li, Kejie; Wu, Xiaobing; Zhang, Shujiang

2008-03-01

The unwrapped and correcting algorithm based on Coordinate Rotation Digital Computer (CORDIC) and bilinear interpolation algorithm was presented in this paper, with the purpose of processing dynamic panoramic annular image. An original annular panoramic image captured by panoramic annular lens (PAL) can be unwrapped and corrected to conventional rectangular image without distortion, which is much more coincident with people's vision. The algorithm for panoramic image processing is modeled by VHDL and implemented in FPGA. The experimental results show that the proposed panoramic image algorithm for unwrapped and distortion correction has the lower computation complexity and the architecture for dynamic panoramic image processing has lower hardware cost and power consumption. And the proposed algorithm is valid.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Menegotti, L.; Delana, A.; Martignano, A.

Film dosimetry is an attractive tool for dose distribution verification in intensity modulated radiotherapy (IMRT). A critical aspect of radiochromic film dosimetry is the scanner used for the readout of the film: the output needs to be calibrated in dose response and corrected for pixel value and spatial dependent nonuniformity caused by light scattering; these procedures can take a long time. A method for a fast and accurate calibration and uniformity correction for radiochromic film dosimetry is presented: a single film exposure is used to do both calibration and correction. Gafchromic EBT films were read with two flatbed charge coupledmore » device scanners (Epson V750 and 1680Pro). The accuracy of the method is investigated with specific dose patterns and an IMRT beam. The comparisons with a two-dimensional array of ionization chambers using a 18x18 cm{sup 2} open field and an inverse pyramid dose pattern show an increment in the percentage of points which pass the gamma analysis (tolerance parameters of 3% and 3 mm), passing from 55% and 64% for the 1680Pro and V750 scanners, respectively, to 94% for both scanners for the 18x18 open field, and from 76% and 75% to 91% for the inverse pyramid pattern. Application to an IMRT beam also shows better gamma index results, passing from 88% and 86% for the two scanners, respectively, to 94% for both. The number of points and dose range considered for correction and calibration appears to be appropriate for use in IMRT verification. The method showed to be fast and to correct properly the nonuniformity and has been adopted for routine clinical IMRT dose verification.« less

A Scalable Nonuniform Pointer Analysis for Embedded Program

NASA Technical Reports Server (NTRS)

Venet, Arnaud

2004-01-01

In this paper we present a scalable pointer analysis for embedded applications that is able to distinguish between instances of recursively defined data structures and elements of arrays. The main contribution consists of an efficient yet precise algorithm that can handle multithreaded programs. We first perform an inexpensive flow-sensitive analysis of each function in the program that generates semantic equations describing the effect of the function on the memory graph. These equations bear numerical constraints that describe nonuniform points-to relationships. We then iteratively solve these equations in order to obtain an abstract storage graph that describes the shape of data structures at every point of the program for all possible thread interleavings. We bring experimental evidence that this approach is tractable and precise for real-size embedded applications.

Atmospheric Correction Prototype Algorithm for High Spatial Resolution Multispectral Earth Observing Imaging Systems

NASA Technical Reports Server (NTRS)

Pagnutti, Mary

2006-01-01

This viewgraph presentation reviews the creation of a prototype algorithm for atmospheric correction using high spatial resolution earth observing imaging systems. The objective of the work was to evaluate accuracy of a prototype algorithm that uses satellite-derived atmospheric products to generate scene reflectance maps for high spatial resolution (HSR) systems. This presentation focused on preliminary results of only the satellite-based atmospheric correction algorithm.

Aircraft Survivability: Susceptibility Reduction, Spring 2003

DTIC Science & Technology

2003-01-01

approach to implementing the real-time nonuniformity correction (NUC) hardware. Packaging and size constraints would not prohibit the future...92 Hz MWIR #3 Imager 640x512 InSb FPA Band: 3µm–5µm Pixel size: 24µm Max frame rate: 92 Hz LWIR Imager 640x512 HgCdTe FPA Band: 3µm–5µm Pixel size

Design of a Slab Waveguide Multiaperture Fourier Spectrometer for Water Vapor Measurements in Earth's Atmosphere

NASA Astrophysics Data System (ADS)

Sinclair, Kenneth; Florjańczyk, Mirosław; Solheim, Brian; Scott, Alan; Quine, Ben; Cheben, Pavel

Concept, theory and design of a new type of waveguide device, a multiaperture Fourier-transform planar waveguide spectrometer[1], implemented as a prototype instrument is pre-sented. The spectrometer's objective is to demonstrate the ability of the new slab waveguide technology for application in remote sensing instruments[2]. The spectrometer will use a limb viewing configuration to detect the 1.36um waveband allowing concentrations of water vapor in earth's atmosphere to be measured[3]. The most challenging aspects of the design, assembly and calibration are presented. Focus will be given to the effects of packaging the spectrometer and interfacing to the detector array. Stress-induced birefringence will affect the performance of the waveguides, therefore the design of a stress-free mounting over a range of temperatures is important. Spectral retrieval algo-rithms will have to correct for expected fabrication errors in the waveguides. Data processing algorithms will also be developed to correct for non-uniformities of input brightness through the array, making use of MMI output couplers to capture both the in-phase and anti-phase interferometer outputs. A performance assessment of an existing breadboard spectrometer will demonstrate the capability of the instrument. REFERENCES 1. M. Florjáczyk, P. Cheben, S. Janz, A. Scott, B. Solheim, and D.-X. Xu, "Multiaper-n ture planar waveguide spectrometer formed by arrayed Mach-Zehnder interferometers," Opt. Expr. 15(26), 18176-18189 (2007). 2. M. Florjáczyk, P. Cheben, S. Janz, B. Lamontagne, J. n Lapointe, A. Scott, B. Solheim, and D.-X. Xu, "Slab waveguiode spatial heterodyne spectrom-eters for remote sensing from space," Optical sensors 2009. Proceedings of the SPIE, Volume 7356 (2009)., pp. 73560V-73560V-7 (2009). 3. A. Scott, M. Florjáczyk, P. Cheben, S. Janz, n B. Solheim, and D.-X. Xu, "Micro-interferometer with high throughput for remote sensing." MOEMS and Miniaturized Systems VIII. Proceedings of the SPIE, Volume 7208 (2009)., pp. 72080G-72080G-7 (2009).

Intelligent Network-Centric Sensors Development Program

DTIC Science & Technology

2012-07-31

Image sensor Configuration: ; Cone 360 degree LWIR PFx Sensor: •■. Image sensor . Configuration: Image MWIR Configuration; Cone 360 degree... LWIR PFx Sensor: Video Configuration: Cone 360 degree SW1R, 2. Reasoning Process to Match Sensor Systems to Algorithms The ontological...effects of coherent imaging because of aberrations. Another reason is the specular nature of active imaging. Both contribute to the nonuniformity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Le, Hai P.; Cambier, Jean -Luc

Here, we present a numerical model and a set of conservative algorithms for Non-Maxwellian plasma kinetics with inelastic collisions. These algorithms self-consistently solve for the time evolution of an isotropic electron energy distribution function interacting with an atomic state distribution function of an arbitrary number of levels through collisional excitation, deexcitation, as well as ionization and recombination. Electron-electron collisions, responsible for thermalization of the electron distribution, are also included in the model. The proposed algorithms guarantee mass/charge and energy conservation in a single step, and is applied to the case of non-uniform gridding of the energy axis in the phasemore » space of the electron distribution function. Numerical test cases are shown to demonstrate the accuracy of the method and its conservation properties.« less

Parallel Algorithms for Monte Carlo Particle Transport Simulation on Exascale Computing Architectures

NASA Astrophysics Data System (ADS)

Romano, Paul Kollath

Monte Carlo particle transport methods are being considered as a viable option for high-fidelity simulation of nuclear reactors. While Monte Carlo methods offer several potential advantages over deterministic methods, there are a number of algorithmic shortcomings that would prevent their immediate adoption for full-core analyses. In this thesis, algorithms are proposed both to ameliorate the degradation in parallel efficiency typically observed for large numbers of processors and to offer a means of decomposing large tally data that will be needed for reactor analysis. A nearest-neighbor fission bank algorithm was proposed and subsequently implemented in the OpenMC Monte Carlo code. A theoretical analysis of the communication pattern shows that the expected cost is O( N ) whereas traditional fission bank algorithms are O(N) at best. The algorithm was tested on two supercomputers, the Intrepid Blue Gene/P and the Titan Cray XK7, and demonstrated nearly linear parallel scaling up to 163,840 processor cores on a full-core benchmark problem. An algorithm for reducing network communication arising from tally reduction was analyzed and implemented in OpenMC. The proposed algorithm groups only particle histories on a single processor into batches for tally purposes---in doing so it prevents all network communication for tallies until the very end of the simulation. The algorithm was tested, again on a full-core benchmark, and shown to reduce network communication substantially. A model was developed to predict the impact of load imbalances on the performance of domain decomposed simulations. The analysis demonstrated that load imbalances in domain decomposed simulations arise from two distinct phenomena: non-uniform particle densities and non-uniform spatial leakage. The dominant performance penalty for domain decomposition was shown to come from these physical effects rather than insufficient network bandwidth or high latency. The model predictions were verified with measured data from simulations in OpenMC on a full-core benchmark problem. Finally, a novel algorithm for decomposing large tally data was proposed, analyzed, and implemented/tested in OpenMC. The algorithm relies on disjoint sets of compute processes and tally servers. The analysis showed that for a range of parameters relevant to LWR analysis, the tally server algorithm should perform with minimal overhead. Tests were performed on Intrepid and Titan and demonstrated that the algorithm did indeed perform well over a wide range of parameters. (Copies available exclusively from MIT Libraries, libraries.mit.edu/docs - docs mit.edu)

Dimension-Factorized Range Migration Algorithm for Regularly Distributed Array Imaging

PubMed Central

Guo, Qijia; Wang, Jie; Chang, Tianying

2017-01-01

The two-dimensional planar MIMO array is a popular approach for millimeter wave imaging applications. As a promising practical alternative, sparse MIMO arrays have been devised to reduce the number of antenna elements and transmitting/receiving channels with predictable and acceptable loss in image quality. In this paper, a high precision three-dimensional imaging algorithm is proposed for MIMO arrays of the regularly distributed type, especially the sparse varieties. Termed the Dimension-Factorized Range Migration Algorithm, the new imaging approach factorizes the conventional MIMO Range Migration Algorithm into multiple operations across the sparse dimensions. The thinner the sparse dimensions of the array, the more efficient the new algorithm will be. Advantages of the proposed approach are demonstrated by comparison with the conventional MIMO Range Migration Algorithm and its non-uniform fast Fourier transform based variant in terms of all the important characteristics of the approaches, especially the anti-noise capability. The computation cost is analyzed as well to evaluate the efficiency quantitatively. PMID:29113083

Fast and robust wavelet-based dynamic range compression and contrast enhancement model with color restoration

NASA Astrophysics Data System (ADS)

Unaldi, Numan; Asari, Vijayan K.; Rahman, Zia-ur

2009-05-01

Recently we proposed a wavelet-based dynamic range compression algorithm to improve the visual quality of digital images captured from high dynamic range scenes with non-uniform lighting conditions. The fast image enhancement algorithm that provides dynamic range compression, while preserving the local contrast and tonal rendition, is also a good candidate for real time video processing applications. Although the colors of the enhanced images produced by the proposed algorithm are consistent with the colors of the original image, the proposed algorithm fails to produce color constant results for some "pathological" scenes that have very strong spectral characteristics in a single band. The linear color restoration process is the main reason for this drawback. Hence, a different approach is required for the final color restoration process. In this paper the latest version of the proposed algorithm, which deals with this issue is presented. The results obtained by applying the algorithm to numerous natural images show strong robustness and high image quality.

Diagnostic Performance of a Novel Coronary CT Angiography Algorithm: Prospective Multicenter Validation of an Intracycle CT Motion Correction Algorithm for Diagnostic Accuracy.

PubMed

Andreini, Daniele; Lin, Fay Y; Rizvi, Asim; Cho, Iksung; Heo, Ran; Pontone, Gianluca; Bartorelli, Antonio L; Mushtaq, Saima; Villines, Todd C; Carrascosa, Patricia; Choi, Byoung Wook; Bloom, Stephen; Wei, Han; Xing, Yan; Gebow, Dan; Gransar, Heidi; Chang, Hyuk-Jae; Leipsic, Jonathon; Min, James K

2018-06-01

Motion artifact can reduce the diagnostic accuracy of coronary CT angiography (CCTA) for coronary artery disease (CAD). The purpose of this study was to compare the diagnostic performance of an algorithm dedicated to correcting coronary motion artifact with the performance of standard reconstruction methods in a prospective international multicenter study. Patients referred for clinically indicated invasive coronary angiography (ICA) for suspected CAD prospectively underwent an investigational CCTA examination free from heart rate-lowering medications before they underwent ICA. Blinded core laboratory interpretations of motion-corrected and standard reconstructions for obstructive CAD (≥ 50% stenosis) were compared with ICA findings. Segments unevaluable owing to artifact were considered obstructive. The primary endpoint was per-subject diagnostic accuracy of the intracycle motion correction algorithm for obstructive CAD found at ICA. Among 230 patients who underwent CCTA with the motion correction algorithm and standard reconstruction, 92 (40.0%) had obstructive CAD on the basis of ICA findings. At a mean heart rate of 68.0 ± 11.7 beats/min, the motion correction algorithm reduced the number of nondiagnostic scans compared with standard reconstruction (20.4% vs 34.8%; p < 0.001). Diagnostic accuracy for obstructive CAD with the motion correction algorithm (62%; 95% CI, 56-68%) was not significantly different from that of standard reconstruction on a per-subject basis (59%; 95% CI, 53-66%; p = 0.28) but was superior on a per-vessel basis: 77% (95% CI, 74-80%) versus 72% (95% CI, 69-75%) (p = 0.02). The motion correction algorithm was superior in subgroups of patients with severely obstructive (≥ 70%) stenosis, heart rate ≥ 70 beats/min, and vessels in the atrioventricular groove. The motion correction algorithm studied reduces artifacts and improves diagnostic performance for obstructive CAD on a per-vessel basis and in selected subgroups on a per-subject basis.

Adaptation of a Hyperspectral Atmospheric Correction Algorithm for Multi-spectral Ocean Color Data in Coastal Waters. Chapter 3

NASA Technical Reports Server (NTRS)

Gao, Bo-Cai; Montes, Marcos J.; Davis, Curtiss O.

2003-01-01

This SIMBIOS contract supports several activities over its three-year time-span. These include certain computational aspects of atmospheric correction, including the modification of our hyperspectral atmospheric correction algorithm Tafkaa for various multi-spectral instruments, such as SeaWiFS, MODIS, and GLI. Additionally, since absorbing aerosols are becoming common in many coastal areas, we are making the model calculations to incorporate various absorbing aerosol models into tables used by our Tafkaa atmospheric correction algorithm. Finally, we have developed the algorithms to use MODIS data to characterize thin cirrus effects on aerosol retrieval.

Tomographic diagnostic of the hydrogen beam from a negative ion source

NASA Astrophysics Data System (ADS)

Agostini, M.; Brombin, M.; Serianni, G.; Pasqualotto, R.

2011-10-01

In this paper the tomographic diagnostic developed to characterize the 2D density distribution of a particle beam from a negative ion source is described. In particular, the reliability of this diagnostic has been tested by considering the geometry of the source for the production of ions of deuterium extracted from an rf plasma (SPIDER). SPIDER is a low energy prototype negative ion source for the international thermonuclear experimental reactor (ITER) neutral beam injector, aimed at demonstrating the capability to create and extract a current of D- (H-) ions up to 50 A (60 A) accelerated at 100 kV. The ions are extracted over a wide surface (1.52×0.56m2) with a uniform plasma density which is prescribed to remain within 10% of the mean value. The main target of the tomographic diagnostic is the measurement of the beam uniformity with sufficient spatial resolution and of its evolution throughout the pulse duration. To reach this target, a tomographic algorithm based on the simultaneous algebraic reconstruction technique is developed and the geometry of the lines of sight is optimized so as to cover the whole area of the beam. Phantoms that reproduce different experimental beam configurations are simulated and reconstructed, and the role of the noise in the signals is studied. The simulated phantoms are correctly reconstructed and their two-dimensional spatial nonuniformity is correctly estimated, up to a noise level of 10% with respect to the signal.

Filtering method of star control points for geometric correction of remote sensing image based on RANSAC algorithm

NASA Astrophysics Data System (ADS)

Tan, Xiangli; Yang, Jungang; Deng, Xinpu

2018-04-01

In the process of geometric correction of remote sensing image, occasionally, a large number of redundant control points may result in low correction accuracy. In order to solve this problem, a control points filtering algorithm based on RANdom SAmple Consensus (RANSAC) was proposed. The basic idea of the RANSAC algorithm is that using the smallest data set possible to estimate the model parameters and then enlarge this set with consistent data points. In this paper, unlike traditional methods of geometric correction using Ground Control Points (GCPs), the simulation experiments are carried out to correct remote sensing images, which using visible stars as control points. In addition, the accuracy of geometric correction without Star Control Points (SCPs) optimization is also shown. The experimental results show that the SCPs's filtering method based on RANSAC algorithm has a great improvement on the accuracy of remote sensing image correction.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pacilio, Massimiliano, E-mail: mpacilio@scamillofo

Purpose: Many centers aim to plan liver transarterial radioembolization (TARE) with dosimetry, even without CT-based attenuation correction (AC), or with unoptimized scatter correction (SC) methods. This work investigates the impact of presence vs absence of such corrections, and limited spatial resolution, on 3D dosimetry for TARE. Methods: Three voxelized phantoms were derived from CT images of real patients with different body sizes. Simulations of {sup 99m}Tc-SPECT projections were performed with the SIMIND code, assuming three activity distributions in the liver: uniform, inside a “liver’s segment,” or distributing multiple uptaking nodules (“nonuniform liver”), with a tumoral liver/healthy parenchyma ratio of 5:1.more » Projection data were reconstructed by a commercial workstation, with OSEM protocol not specifically optimized for dosimetry (spatial resolution of 12.6 mm), with/without SC (optimized, or with parameters predefined by the manufacturer; dual energy window), and with/without AC. Activity in voxels was calculated by a relative calibration, assuming identical microspheres and {sup 99m}Tc-SPECT counts spatial distribution. 3D dose distributions were calculated by convolution with {sup 90}Y voxel S-values, assuming permanent trapping of microspheres. Cumulative dose-volume histograms in lesions and healthy parenchyma from different reconstructions were compared with those obtained from the reference biodistribution (the “gold standard,” GS), assessing differences for D95%, D70%, and D50% (i.e., minimum value of the absorbed dose to a percentage of the irradiated volume). γ tool analysis with tolerance of 3%/13 mm was used to evaluate the agreement between GS and simulated cases. The influence of deep-breathing was studied, blurring the reference biodistributions with a 3D anisotropic gaussian kernel, and performing the simulations once again. Results: Differences of the dosimetric indicators were noticeable in some cases, always negative for lesions and distributed around zero for parenchyma. Application of AC and SC reduced systematically the differences for lesions by 5%–14% for a liver segment, and by 7%–12% for a nonuniform liver. For parenchyma, the data trend was less clear, but the overall range of variability passed from −10%/40% for a liver segment, and −10%/20% for a nonuniform liver, to −13%/6% in both cases. Applying AC, SC with preset parameters gave similar results to optimized SC, as confirmed by γ tool analysis. Moreover, γ analysis confirmed that solely AC and SC are not sufficient to obtain accurate 3D dose distribution. With breathing, the accuracy worsened severely for all dosimetric indicators, above all for lesions: with AC and optimized SC, −38%/−13% in liver’s segment, −61%/−40% in the nonuniform liver. For parenchyma, D50% resulted always less sensitive to breathing and sub-optimal correction methods (difference overall range: −7%/13%). Conclusions: Reconstruction protocol optimization, AC, SC, PVE and respiratory motion corrections should be implemented to obtain the best possible dosimetric accuracy. On the other side, thanks to the relative calibration, D50% inaccuracy for the healthy parenchyma from absence of AC was less than expected, while the optimization of SC was scarcely influent. The relative calibration therefore allows to perform TARE planning, basing on D50% for the healthy parenchyma, even without AC or with suboptimal corrections, rather than rely on nondosimetric methods.« less

Dual-beam manually-actuated distortion-corrected imaging (DMDI) with micromotor catheters.

PubMed

Lee, Anthony M D; Hohert, Geoffrey; Angkiriwang, Patricia T; MacAulay, Calum; Lane, Pierre

2017-09-04

We present a new paradigm for performing two-dimensional scanning called dual-beam manually-actuated distortion-corrected imaging (DMDI). DMDI operates by imaging the same object with two spatially-separated beams that are being mechanically scanned rapidly in one dimension with slower manual actuation along a second dimension. Registration of common features between the two imaging channels allows remapping of the images to correct for distortions due to manual actuation. We demonstrate DMDI using a 4.7 mm OD rotationally scanning dual-beam micromotor catheter (DBMC). The DBMC requires a simple, one-time calibration of the beam paths by imaging a patterned phantom. DMDI allows for distortion correction of non-uniform axial speed and rotational motion of the DBMC. We show the utility of this technique by demonstrating en face OCT image distortion correction of a manually-scanned checkerboard phantom and fingerprint scan.

Baseline correction combined partial least squares algorithm and its application in on-line Fourier transform infrared quantitative analysis.

PubMed

Peng, Jiangtao; Peng, Silong; Xie, Qiong; Wei, Jiping

2011-04-01

In order to eliminate the lower order polynomial interferences, a new quantitative calibration algorithm "Baseline Correction Combined Partial Least Squares (BCC-PLS)", which combines baseline correction and conventional PLS, is proposed. By embedding baseline correction constraints into PLS weights selection, the proposed calibration algorithm overcomes the uncertainty in baseline correction and can meet the requirement of on-line attenuated total reflectance Fourier transform infrared (ATR-FTIR) quantitative analysis. The effectiveness of the algorithm is evaluated by the analysis of glucose and marzipan ATR-FTIR spectra. BCC-PLS algorithm shows improved prediction performance over PLS. The root mean square error of cross-validation (RMSECV) on marzipan spectra for the prediction of the moisture is found to be 0.53%, w/w (range 7-19%). The sugar content is predicted with a RMSECV of 2.04%, w/w (range 33-68%). Copyright © 2011 Elsevier B.V. All rights reserved.

Polarization Sensitive QWIP Thermal Imager

DTIC Science & Technology

2000-03-01

array (FPA) with peak responsivity in the long-wave infrared ( LWIR ) spectral band near 9 µm. Polarization-dependent responsivity is achieved by...demonstrated in various combinations: MWIR/ LWIR (using rectangular grid gratings), MWIR/MWIR, and LWIR / LWIR . The FPA described here was fabricated with a...CCA supports the nonuniformity correction, global gain and level control, failed pixel substitution, dynamic range reduction, BIT status and serial

Quantitative image fusion in infrared radiometry

NASA Astrophysics Data System (ADS)

Romm, Iliya; Cukurel, Beni

2018-05-01

Towards high-accuracy infrared radiance estimates, measurement practices and processing techniques aimed to achieve quantitative image fusion using a set of multi-exposure images of a static scene are reviewed. The conventional non-uniformity correction technique is extended, as the original is incompatible with quantitative fusion. Recognizing the inherent limitations of even the extended non-uniformity correction, an alternative measurement methodology, which relies on estimates of the detector bias using self-calibration, is developed. Combining data from multi-exposure images, two novel image fusion techniques that ultimately provide high tonal fidelity of a photoquantity are considered: ‘subtract-then-fuse’, which conducts image subtraction in the camera output domain and partially negates the bias frame contribution common to both the dark and scene frames; and ‘fuse-then-subtract’, which reconstructs the bias frame explicitly and conducts image fusion independently for the dark and the scene frames, followed by subtraction in the photoquantity domain. The performances of the different techniques are evaluated for various synthetic and experimental data, identifying the factors contributing to potential degradation of the image quality. The findings reflect the superiority of the ‘fuse-then-subtract’ approach, conducting image fusion via per-pixel nonlinear weighted least squares optimization.

Self-adaptive calibration for staring infrared sensors

NASA Astrophysics Data System (ADS)

Kendall, William B.; Stocker, Alan D.

1993-10-01

This paper presents a new, self-adaptive technique for the correlation of non-uniformities (fixed-pattern noise) in high-density infrared focal-plane detector arrays. We have developed a new approach to non-uniformity correction in which we use multiple image frames of the scene itself, and take advantage of the aim-point wander caused by jitter, residual tracking errors, or deliberately induced motion. Such wander causes each detector in the array to view multiple scene elements, and each scene element to be viewed by multiple detectors. It is therefore possible to formulate (and solve) a set of simultaneous equations from which correction parameters can be computed for the detectors. We have tested our approach with actual images collected by the ARPA-sponsored MUSIC infrared sensor. For these tests we employed a 60-frame (0.75-second) sequence of terrain images for which an out-of-date calibration was deliberately used. The sensor was aimed at a point on the ground via an operator-assisted tracking system having a maximum aim point wander on the order of ten pixels. With these data, we were able to improve the calibration accuracy by a factor of approximately 100.

An Investigation of High-Order Shock-Capturing Methods for Computational Aeroacoustics

NASA Technical Reports Server (NTRS)

Casper, Jay; Baysal, Oktay

1997-01-01

Topics covered include: Low-dispersion scheme for nonlinear acoustic waves in nonuniform flow; Computation of acoustic scattering by a low-dispersion scheme; Algorithmic extension of low-dispersion scheme and modeling effects for acoustic wave simulation; The accuracy of shock capturing in two spatial dimensions; Using high-order methods on lower-order geometries; and Computational considerations for the simulation of discontinuous flows.

Numerical Investigation of the Flow Angularity Effects of the NASA Langley UPWT on the Ares I DAC1 0.01-Scale Model

NASA Technical Reports Server (NTRS)

Lee, Henry C.; Klopfer, Goetz H.; Onufer, Jeff T.

2011-01-01

Investigation of the non-uniform flow angularity effects on the Ares I DAC-1 in the Langley Unitary Plan Wind Tunnel are explored through simulations by OVERFLOW. Verification of the wind tunnel results are needed to ensure that the standard wind tunnel calibration procedures for large models are valid. The expectation is that the systematic error can be quantified, and thus be used to correct the wind tunnel data. The corrected wind tunnel data can then be used to quantify the CFD uncertainties.

High-order nonuniformly correlated beams

NASA Astrophysics Data System (ADS)

Wu, Dan; Wang, Fei; Cai, Yangjian

2018-02-01

We have introduced a class of partially coherent beams with spatially varying correlations named high-order nonuniformly correlated (HNUC) beams, as an extension of conventional nonuniformly correlated (NUC) beams. Such beams bring a new parameter (mode order) which is used to tailor the spatial coherence properties. The behavior of the spectral density of the HNUC beams on propagation has been investigated through numerical examples with the help of discrete model decomposition and fast Fourier transform (FFT) algorithm. Our results reveal that by selecting the mode order appropriately, the more sharpened intensity maxima can be achieved at a certain propagation distance compared to that of the NUC beams, and the lateral shift of the intensity maxima on propagation is closed related to the mode order. Furthermore, analytical expressions for the r.m.s width and the propagation factor of the HNUC beams on free-space propagation are derived by means of Wigner distribution function. The influence of initial beam parameters on the evolution of the r.m.s width and the propagation factor, and the relation between the r.m.s width and the occurring of the sharpened intensity maxima on propagation have been studied and discussed in detail.

Nonuniform Moving Boundary Method for Computational Fluid Dynamics Simulation of Intrathecal Cerebrospinal Flow Distribution in a Cynomolgus Monkey.

PubMed

Khani, Mohammadreza; Xing, Tao; Gibbs, Christina; Oshinski, John N; Stewart, Gregory R; Zeller, Jillynne R; Martin, Bryn A

2017-08-01

A detailed quantification and understanding of cerebrospinal fluid (CSF) dynamics may improve detection and treatment of central nervous system (CNS) diseases and help optimize CSF system-based delivery of CNS therapeutics. This study presents a computational fluid dynamics (CFD) model that utilizes a nonuniform moving boundary approach to accurately reproduce the nonuniform distribution of CSF flow along the spinal subarachnoid space (SAS) of a single cynomolgus monkey. A magnetic resonance imaging (MRI) protocol was developed and applied to quantify subject-specific CSF space geometry and flow and define the CFD domain and boundary conditions. An algorithm was implemented to reproduce the axial distribution of unsteady CSF flow by nonuniform deformation of the dura surface. Results showed that maximum difference between the MRI measurements and CFD simulation of CSF flow rates was <3.6%. CSF flow along the entire spine was laminar with a peak Reynolds number of ∼150 and average Womersley number of ∼5.4. Maximum CSF flow rate was present at the C4-C5 vertebral level. Deformation of the dura ranged up to a maximum of 134 μm. Geometric analysis indicated that total spinal CSF space volume was ∼8.7 ml. Average hydraulic diameter, wetted perimeter, and SAS area were 2.9 mm, 37.3 mm and 27.24 mm2, respectively. CSF pulse wave velocity (PWV) along the spine was quantified to be 1.2 m/s.

Multi-resolution analysis for region of interest extraction in thermographic nondestructive evaluation

NASA Astrophysics Data System (ADS)

Ortiz-Jaramillo, B.; Fandiño Toro, H. A.; Benitez-Restrepo, H. D.; Orjuela-Vargas, S. A.; Castellanos-Domínguez, G.; Philips, W.

2012-03-01

Infrared Non-Destructive Testing (INDT) is known as an effective and rapid method for nondestructive inspection. It can detect a broad range of near-surface structuring flaws in metallic and composite components. Those flaws are modeled as a smooth contour centered at peaks of stored thermal energy, termed Regions of Interest (ROI). Dedicated methodologies must detect the presence of those ROIs. In this paper, we present a methodology for ROI extraction in INDT tasks. The methodology deals with the difficulties due to the non-uniform heating. The non-uniform heating affects low spatial/frequencies and hinders the detection of relevant points in the image. In this paper, a methodology for ROI extraction in INDT using multi-resolution analysis is proposed, which is robust to ROI low contrast and non-uniform heating. The former methodology includes local correlation, Gaussian scale analysis and local edge detection. In this methodology local correlation between image and Gaussian window provides interest points related to ROIs. We use a Gaussian window because thermal behavior is well modeled by Gaussian smooth contours. Also, the Gaussian scale is used to analyze details in the image using multi-resolution analysis avoiding low contrast, non-uniform heating and selection of the Gaussian window size. Finally, local edge detection is used to provide a good estimation of the boundaries in the ROI. Thus, we provide a methodology for ROI extraction based on multi-resolution analysis that is better or equal compared with the other dedicate algorithms proposed in the state of art.

Digital algorithm for dispersion correction in optical coherence tomography for homogeneous and stratified media.

PubMed

Marks, Daniel L; Oldenburg, Amy L; Reynolds, J Joshua; Boppart, Stephen A

2003-01-10

The resolution of optical coherence tomography (OCT) often suffers from blurring caused by material dispersion. We present a numerical algorithm for computationally correcting the effect of material dispersion on OCT reflectance data for homogeneous and stratified media. This is experimentally demonstrated by correcting the image of a polydimethyl siloxane microfludic structure and of glass slides. The algorithm can be implemented using the fast Fourier transform. With broad spectral bandwidths and highly dispersive media or thick objects, dispersion correction becomes increasingly important.

Digital Algorithm for Dispersion Correction in Optical Coherence Tomography for Homogeneous and Stratified Media

NASA Astrophysics Data System (ADS)

Marks, Daniel L.; Oldenburg, Amy L.; Reynolds, J. Joshua; Boppart, Stephen A.

2003-01-01

The resolution of optical coherence tomography (OCT) often suffers from blurring caused by material dispersion. We present a numerical algorithm for computationally correcting the effect of material dispersion on OCT reflectance data for homogeneous and stratified media. This is experimentally demonstrated by correcting the image of a polydimethyl siloxane microfludic structure and of glass slides. The algorithm can be implemented using the fast Fourier transform. With broad spectral bandwidths and highly dispersive media or thick objects, dispersion correction becomes increasingly important.

A numerical algorithm for MHD of free surface flows at low magnetic Reynolds numbers

NASA Astrophysics Data System (ADS)

Samulyak, Roman; Du, Jian; Glimm, James; Xu, Zhiliang

2007-10-01

We have developed a numerical algorithm and computational software for the study of magnetohydrodynamics (MHD) of free surface flows at low magnetic Reynolds numbers. The governing system of equations is a coupled hyperbolic-elliptic system in moving and geometrically complex domains. The numerical algorithm employs the method of front tracking and the Riemann problem for material interfaces, second order Godunov-type hyperbolic solvers, and the embedded boundary method for the elliptic problem in complex domains. The numerical algorithm has been implemented as an MHD extension of FronTier, a hydrodynamic code with free interface support. The code is applicable for numerical simulations of free surface flows of conductive liquids or weakly ionized plasmas. The code has been validated through the comparison of numerical simulations of a liquid metal jet in a non-uniform magnetic field with experiments and theory. Simulations of the Muon Collider/Neutrino Factory target have also been discussed.

A k-Vector Approach to Sampling, Interpolation, and Approximation

NASA Astrophysics Data System (ADS)

Mortari, Daniele; Rogers, Jonathan

2013-12-01

The k-vector search technique is a method designed to perform extremely fast range searching of large databases at computational cost independent of the size of the database. k-vector search algorithms have historically found application in satellite star-tracker navigation systems which index very large star catalogues repeatedly in the process of attitude estimation. Recently, the k-vector search algorithm has been applied to numerous other problem areas including non-uniform random variate sampling, interpolation of 1-D or 2-D tables, nonlinear function inversion, and solution of systems of nonlinear equations. This paper presents algorithms in which the k-vector search technique is used to solve each of these problems in a computationally-efficient manner. In instances where these tasks must be performed repeatedly on a static (or nearly-static) data set, the proposed k-vector-based algorithms offer an extremely fast solution technique that outperforms standard methods.

Fluid preconditioning for Newton–Krylov-based, fully implicit, electrostatic particle-in-cell simulations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, G., E-mail: gchen@lanl.gov; Chacón, L.; Leibs, C.A.

2014-02-01

A recent proof-of-principle study proposes an energy- and charge-conserving, nonlinearly implicit electrostatic particle-in-cell (PIC) algorithm in one dimension [9]. The algorithm in the reference employs an unpreconditioned Jacobian-free Newton–Krylov method, which ensures nonlinear convergence at every timestep (resolving the dynamical timescale of interest). Kinetic enslavement, which is one key component of the algorithm, not only enables fully implicit PIC as a practical approach, but also allows preconditioning the kinetic solver with a fluid approximation. This study proposes such a preconditioner, in which the linearized moment equations are closed with moments computed from particles. Effective acceleration of the linear GMRES solvemore » is demonstrated, on both uniform and non-uniform meshes. The algorithm performance is largely insensitive to the electron–ion mass ratio. Numerical experiments are performed on a 1D multi-scale ion acoustic wave test problem.« less

A Linear Bicharacteristic FDTD Method

NASA Technical Reports Server (NTRS)

Beggs, John H.

2001-01-01

The linear bicharacteristic scheme (LBS) was originally developed to improve unsteady solutions in computational acoustics and aeroacoustics [1]-[7]. It is a classical leapfrog algorithm, but is combined with upwind bias in the spatial derivatives. This approach preserves the time-reversibility of the leapfrog algorithm, which results in no dissipation, and it permits more flexibility by the ability to adopt a characteristic based method. The use of characteristic variables allows the LBS to treat the outer computational boundaries naturally using the exact compatibility equations. The LBS offers a central storage approach with lower dispersion than the Yee algorithm, plus it generalizes much easier to nonuniform grids. It has previously been applied to two and three-dimensional freespace electromagnetic propagation and scattering problems [3], [6], [7]. This paper extends the LBS to model lossy dielectric and magnetic materials. Results are presented for several one-dimensional model problems, and the FDTD algorithm is chosen as a convenient reference for comparison.

A generalized muon trajectory estimation algorithm with energy loss for application to muon tomography

DOE PAGES

Chatzidakis, Stylianos; Liu, Zhengzhi; Hayward, Jason P.; ...

2018-03-28

Here, this work presents a generalized muon trajectory estimation (GMTE) algorithm to estimate the path of a muon in either uniform or nonuniform media. The use of cosmic ray muons in nuclear nonproliferation and safeguards verification applications has recently gained attention due to the non-intrusive and passive nature of the inspection, penetrating capabilities, as well as recent advances in detectors that measure position and direction of the individual muons before and after traversing the imaged object. However, muon image reconstruction techniques are limited in resolution due to low muon flux and the effects of multiple Coulomb scattering (MCS). Current reconstructionmore » algorithms, e.g., point of closest approach (PoCA) or straight-line path (SLP), rely on overly simple assumptions for muon path estimation through the imaged object. For robust muon tomography, efficient and flexible physics-based algorithms are needed to model the MCS process and accurately estimate the most probable trajectory of a muon as it traverses an object. In the present work, the use of a Bayesian framework and a Gaussian approximation of MCS are explored for estimation of the most likely path of a cosmic ray muon traversing uniform or nonuniform media and undergoing MCS. The algorithm’s precision is compared to Monte Carlo simulated muon trajectories. It was found that the algorithm is expected to be able to predict muon tracks to less than 1.5 mm RMS for 0.5 GeV muons and 0.25 mm RMS for 3 GeV muons, a 50% improvement compared to SLP and 15% improvement when compared to PoCA. Further, a 30% increase in useful muon flux was observed relative to PoCA. Muon track prediction improved for higher muon energies or smaller penetration depth where energy loss is not significant. Finally, the effect of energy loss due to ionization is investigated, and a linear energy loss relation that is easy to use is proposed.« less

A generalized muon trajectory estimation algorithm with energy loss for application to muon tomography

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chatzidakis, Stylianos; Liu, Zhengzhi; Hayward, Jason P.

Here, this work presents a generalized muon trajectory estimation (GMTE) algorithm to estimate the path of a muon in either uniform or nonuniform media. The use of cosmic ray muons in nuclear nonproliferation and safeguards verification applications has recently gained attention due to the non-intrusive and passive nature of the inspection, penetrating capabilities, as well as recent advances in detectors that measure position and direction of the individual muons before and after traversing the imaged object. However, muon image reconstruction techniques are limited in resolution due to low muon flux and the effects of multiple Coulomb scattering (MCS). Current reconstructionmore » algorithms, e.g., point of closest approach (PoCA) or straight-line path (SLP), rely on overly simple assumptions for muon path estimation through the imaged object. For robust muon tomography, efficient and flexible physics-based algorithms are needed to model the MCS process and accurately estimate the most probable trajectory of a muon as it traverses an object. In the present work, the use of a Bayesian framework and a Gaussian approximation of MCS are explored for estimation of the most likely path of a cosmic ray muon traversing uniform or nonuniform media and undergoing MCS. The algorithm’s precision is compared to Monte Carlo simulated muon trajectories. It was found that the algorithm is expected to be able to predict muon tracks to less than 1.5 mm RMS for 0.5 GeV muons and 0.25 mm RMS for 3 GeV muons, a 50% improvement compared to SLP and 15% improvement when compared to PoCA. Further, a 30% increase in useful muon flux was observed relative to PoCA. Muon track prediction improved for higher muon energies or smaller penetration depth where energy loss is not significant. Finally, the effect of energy loss due to ionization is investigated, and a linear energy loss relation that is easy to use is proposed.« less

"ON ALGEBRAIC DECODING OF Q-ARY REED-MULLER AND PRODUCT REED-SOLOMON CODES"

DOE Office of Scientific and Technical Information (OSTI.GOV)

SANTHI, NANDAKISHORE

We consider a list decoding algorithm recently proposed by Pellikaan-Wu for q-ary Reed-Muller codes RM{sub q}({ell}, m, n) of length n {le} q{sup m} when {ell} {le} q. A simple and easily accessible correctness proof is given which shows that this algorithm achieves a relative error-correction radius of {tau} {le} (1-{radical}{ell}q{sup m-1}/n). This is an improvement over the proof using one-point Algebraic-Geometric decoding method given in. The described algorithm can be adapted to decode product Reed-Solomon codes. We then propose a new low complexity recursive aJgebraic decoding algorithm for product Reed-Solomon codes and Reed-Muller codes. This algorithm achieves a relativemore » error correction radius of {tau} {le} {Pi}{sub i=1}{sup m} (1 - {radical}k{sub i}/q). This algorithm is then proved to outperform the Pellikaan-Wu algorithm in both complexity and error correction radius over a wide range of code rates.« less

A technique to calibrate spatial light modulator for varying phase response over its spatial regions

NASA Astrophysics Data System (ADS)

Gupta, Deepak K.; Tata, B. V. R.; Ravindran, T. R.

2018-05-01

Holographic Optical Tweezers (HOTs) employ the technique of beam shaping and holography in an optical manipulation system to create a multitude of focal spots for simultaneous trapping and manipulation of sub-microscopic particles. The beam shaping is accomplished by the use of a phase only liquid crystal spatial light modulator (SLM). The efficiency and the uniformity in the generated traps greatly depend on the phase response behavior of SLMs. In addition the SLMs are found to show different phase response over its different spatial regions, due to non-flat structure of SLMs. Also the phase responses are found to vary over different spatial regions due to non-uniform illumination (Gaussian profile of incident laser). There are various techniques to calibrate for the varying phase response by characterizing the phase modulation at various sub-sections. We present a simple and fast technique to calibrate the SLM suffering with spatially varying phase response. We divide the SLM into many sub-sections and optimize the brightness and gamma of each sub-section for maximum diffraction efficiency. This correction is incorporated in the Weighted Gerchberg Saxton (WGS) algorithm for generation of holograms.

Infrared Thermal Imaging System on a Mobile Phone

PubMed Central

Lee, Fu-Feng; Chen, Feng; Liu, Jing

2015-01-01

A novel concept towards pervasively available low-cost infrared thermal imaging system lunched on a mobile phone (MTIS) was proposed and demonstrated in this article. Through digestion on the evolutional development of milestone technologies in the area, it can be found that the portable and low-cost design would become the main stream of thermal imager for civilian purposes. As a representative trial towards this important goal, a MTIS consisting of a thermal infrared module (TIM) and mobile phone with embedded exclusive software (IRAPP) was presented. The basic strategy for the TIM construction is illustrated, including sensor adoption and optical specification. The user-oriented software was developed in the Android environment by considering its popularity and expandability. Computational algorithms with non-uniformity correction and scene-change detection are established to optimize the imaging quality and efficiency of TIM. The performance experiments and analysis indicated that the currently available detective distance for the MTIS is about 29 m. Furthermore, some family-targeted utilization enabled by MTIS was also outlined, such as sudden infant death syndrome (SIDS) prevention, etc. This work suggests a ubiquitous way of significantly extending thermal infrared image into rather wide areas especially health care in the coming time. PMID:25942639

A discriminative model-constrained EM approach to 3D MRI brain tissue classification and intensity non-uniformity correction

NASA Astrophysics Data System (ADS)

Wels, Michael; Zheng, Yefeng; Huber, Martin; Hornegger, Joachim; Comaniciu, Dorin

2011-06-01

We describe a fully automated method for tissue classification, which is the segmentation into cerebral gray matter (GM), cerebral white matter (WM), and cerebral spinal fluid (CSF), and intensity non-uniformity (INU) correction in brain magnetic resonance imaging (MRI) volumes. It combines supervised MRI modality-specific discriminative modeling and unsupervised statistical expectation maximization (EM) segmentation into an integrated Bayesian framework. While both the parametric observation models and the non-parametrically modeled INUs are estimated via EM during segmentation itself, a Markov random field (MRF) prior model regularizes segmentation and parameter estimation. Firstly, the regularization takes into account knowledge about spatial and appearance-related homogeneity of segments in terms of pairwise clique potentials of adjacent voxels. Secondly and more importantly, patient-specific knowledge about the global spatial distribution of brain tissue is incorporated into the segmentation process via unary clique potentials. They are based on a strong discriminative model provided by a probabilistic boosting tree (PBT) for classifying image voxels. It relies on the surrounding context and alignment-based features derived from a probabilistic anatomical atlas. The context considered is encoded by 3D Haar-like features of reduced INU sensitivity. Alignment is carried out fully automatically by means of an affine registration algorithm minimizing cross-correlation. Both types of features do not immediately use the observed intensities provided by the MRI modality but instead rely on specifically transformed features, which are less sensitive to MRI artifacts. Detailed quantitative evaluations on standard phantom scans and standard real-world data show the accuracy and robustness of the proposed method. They also demonstrate relative superiority in comparison to other state-of-the-art approaches to this kind of computational task: our method achieves average Dice coefficients of 0.93 ± 0.03 (WM) and 0.90 ± 0.05 (GM) on simulated mono-spectral and 0.94 ± 0.02 (WM) and 0.92 ± 0.04 (GM) on simulated multi-spectral data from the BrainWeb repository. The scores are 0.81 ± 0.09 (WM) and 0.82 ± 0.06 (GM) and 0.87 ± 0.05 (WM) and 0.83 ± 0.12 (GM) for the two collections of real-world data sets—consisting of 20 and 18 volumes, respectively—provided by the Internet Brain Segmentation Repository.

A discriminative model-constrained EM approach to 3D MRI brain tissue classification and intensity non-uniformity correction.

PubMed

Wels, Michael; Zheng, Yefeng; Huber, Martin; Hornegger, Joachim; Comaniciu, Dorin

2011-06-07

We describe a fully automated method for tissue classification, which is the segmentation into cerebral gray matter (GM), cerebral white matter (WM), and cerebral spinal fluid (CSF), and intensity non-uniformity (INU) correction in brain magnetic resonance imaging (MRI) volumes. It combines supervised MRI modality-specific discriminative modeling and unsupervised statistical expectation maximization (EM) segmentation into an integrated Bayesian framework. While both the parametric observation models and the non-parametrically modeled INUs are estimated via EM during segmentation itself, a Markov random field (MRF) prior model regularizes segmentation and parameter estimation. Firstly, the regularization takes into account knowledge about spatial and appearance-related homogeneity of segments in terms of pairwise clique potentials of adjacent voxels. Secondly and more importantly, patient-specific knowledge about the global spatial distribution of brain tissue is incorporated into the segmentation process via unary clique potentials. They are based on a strong discriminative model provided by a probabilistic boosting tree (PBT) for classifying image voxels. It relies on the surrounding context and alignment-based features derived from a probabilistic anatomical atlas. The context considered is encoded by 3D Haar-like features of reduced INU sensitivity. Alignment is carried out fully automatically by means of an affine registration algorithm minimizing cross-correlation. Both types of features do not immediately use the observed intensities provided by the MRI modality but instead rely on specifically transformed features, which are less sensitive to MRI artifacts. Detailed quantitative evaluations on standard phantom scans and standard real-world data show the accuracy and robustness of the proposed method. They also demonstrate relative superiority in comparison to other state-of-the-art approaches to this kind of computational task: our method achieves average Dice coefficients of 0.93 ± 0.03 (WM) and 0.90 ± 0.05 (GM) on simulated mono-spectral and 0.94 ± 0.02 (WM) and 0.92 ± 0.04 (GM) on simulated multi-spectral data from the BrainWeb repository. The scores are 0.81 ± 0.09 (WM) and 0.82 ± 0.06 (GM) and 0.87 ± 0.05 (WM) and 0.83 ± 0.12 (GM) for the two collections of real-world data sets-consisting of 20 and 18 volumes, respectively-provided by the Internet Brain Segmentation Repository.

Coherent field propagation between tilted planes.

PubMed

Stock, Johannes; Worku, Norman Girma; Gross, Herbert

2017-10-01

Propagating electromagnetic light fields between nonparallel planes is of special importance, e.g., within the design of novel computer-generated holograms or the simulation of optical systems. In contrast to the extensively discussed evaluation between parallel planes, the diffraction-based propagation of light onto a tilted plane is more burdensome, since discrete fast Fourier transforms cannot be applied directly. In this work, we propose a quasi-fast algorithm (O(N 3  log N)) that deals with this problem. Based on a proper decomposition into three rotations, the vectorial field distribution is calculated on a tilted plane using the spectrum of plane waves. The algorithm works on equidistant grids, so neither nonuniform Fourier transforms nor an explicit complex interpolation is necessary. The proposed algorithm is discussed in detail and applied to several examples of practical interest.

An algorithm developed in Matlab for the automatic selection of cut-off frequencies, in the correction of strong motion data

NASA Astrophysics Data System (ADS)

Sakkas, Georgios; Sakellariou, Nikolaos

2018-05-01

Strong motion recordings are the key in many earthquake engineering applications and are also fundamental for seismic design. The present study focuses on the automated correction of accelerograms, analog and digital. The main feature of the proposed algorithm is the automatic selection for the cut-off frequencies based on a minimum spectral value in a predefined frequency bandwidth, instead of the typical signal-to-noise approach. The algorithm follows the basic steps of the correction procedure (instrument correction, baseline correction and appropriate filtering). Besides the corrected time histories, Peak Ground Acceleration, Peak Ground Velocity, Peak Ground Displacement values and the corrected Fourier Spectra are also calculated as well as the response spectra. The algorithm is written in Matlab environment, is fast enough and can be used for batch processing or in real-time applications. In addition, the possibility to also perform a signal-to-noise ratio is added as well as to perform causal or acausal filtering. The algorithm has been tested in six significant earthquakes (Kozani-Grevena 1995, Aigio 1995, Athens 1999, Lefkada 2003 and Kefalonia 2014) of the Greek territory with analog and digital accelerograms.

Feasibility of infrared Earth tracking for deep-space optical communications.

PubMed

Chen, Yijiang; Hemmati, Hamid; Ortiz, Gerry G

2012-01-01

Infrared (IR) Earth thermal tracking is a viable option for optical communications to distant planet and outer-planetary missions. However, blurring due to finite receiver aperture size distorts IR Earth images in the presence of Earth's nonuniform thermal emission and limits its applicability. We demonstrate a deconvolution algorithm that can overcome this limitation and reduce the error from blurring to a negligible level. The algorithm is applied successfully to Earth thermal images taken by the Mars Odyssey spacecraft. With the solution to this critical issue, IR Earth tracking is established as a viable means for distant planet and outer-planetary optical communications. © 2012 Optical Society of America

[Application of an Adaptive Inertia Weight Particle Swarm Algorithm in the Magnetic Resonance Bias Field Correction].

PubMed

Wang, Chang; Qin, Xin; Liu, Yan; Zhang, Wenchao

2016-06-01

An adaptive inertia weight particle swarm algorithm is proposed in this study to solve the local optimal problem with the method of traditional particle swarm optimization in the process of estimating magnetic resonance(MR)image bias field.An indicator measuring the degree of premature convergence was designed for the defect of traditional particle swarm optimization algorithm.The inertia weight was adjusted adaptively based on this indicator to ensure particle swarm to be optimized globally and to avoid it from falling into local optimum.The Legendre polynomial was used to fit bias field,the polynomial parameters were optimized globally,and finally the bias field was estimated and corrected.Compared to those with the improved entropy minimum algorithm,the entropy of corrected image was smaller and the estimated bias field was more accurate in this study.Then the corrected image was segmented and the segmentation accuracy obtained in this research was 10% higher than that with improved entropy minimum algorithm.This algorithm can be applied to the correction of MR image bias field.

Calculated X-ray Intensities Using Monte Carlo Algorithms: A Comparison to Experimental EPMA Data

NASA Technical Reports Server (NTRS)

Carpenter, P. K.

2005-01-01

Monte Carlo (MC) modeling has been used extensively to simulate electron scattering and x-ray emission from complex geometries. Here are presented comparisons between MC results and experimental electron-probe microanalysis (EPMA) measurements as well as phi(rhoz) correction algorithms. Experimental EPMA measurements made on NIST SRM 481 (AgAu) and 482 (CuAu) alloys, at a range of accelerating potential and instrument take-off angles, represent a formal microanalysis data set that has been widely used to develop phi(rhoz) correction algorithms. X-ray intensity data produced by MC simulations represents an independent test of both experimental and phi(rhoz) correction algorithms. The alpha-factor method has previously been used to evaluate systematic errors in the analysis of semiconductor and silicate minerals, and is used here to compare the accuracy of experimental and MC-calculated x-ray data. X-ray intensities calculated by MC are used to generate a-factors using the certificated compositions in the CuAu binary relative to pure Cu and Au standards. MC simulations are obtained using the NIST, WinCasino, and WinXray algorithms; derived x-ray intensities have a built-in atomic number correction, and are further corrected for absorption and characteristic fluorescence using the PAP phi(rhoz) correction algorithm. The Penelope code additionally simulates both characteristic and continuum x-ray fluorescence and thus requires no further correction for use in calculating alpha-factors.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Iwai, P; Lins, L Nadler

Purpose: There is a lack of studies with significant cohort data about patients using pacemaker (PM), implanted cardioverter defibrillator (ICD) or cardiac resynchronization therapy (CRT) device undergoing radiotherapy. There is no literature comparing the cumulative doses delivered to those cardiac implanted electronic devices (CIED) calculated by different algorithms neither studies comparing doses with heterogeneity correction or not. The aim of this study was to evaluate the influence of the algorithms Pencil Beam Convolution (PBC), Analytical Anisotropic Algorithm (AAA) and Acuros XB (AXB) as well as heterogeneity correction on risk categorization of patients. Methods: A retrospective analysis of 19 3DCRT ormore » IMRT plans of 17 patients was conducted, calculating the dose delivered to CIED using three different calculation algorithms. Doses were evaluated with and without heterogeneity correction for comparison. Risk categorization of the patients was based on their CIED dependency and cumulative dose in the devices. Results: Total estimated doses at CIED calculated by AAA or AXB were higher than those calculated by PBC in 56% of the cases. In average, the doses at CIED calculated by AAA and AXB were higher than those calculated by PBC (29% and 4% higher, respectively). The maximum difference of doses calculated by each algorithm was about 1 Gy, either using heterogeneity correction or not. Values of maximum dose calculated with heterogeneity correction showed that dose at CIED was at least equal or higher in 84% of the cases with PBC, 77% with AAA and 67% with AXB than dose obtained with no heterogeneity correction. Conclusion: The dose calculation algorithm and heterogeneity correction did not change the risk categorization. Since higher estimated doses delivered to CIED do not compromise treatment precautions to be taken, it’s recommend that the most sophisticated algorithm available should be used to predict dose at the CIED using heterogeneity correction.« less

Comparative analysis of peak-detection techniques for comprehensive two-dimensional chromatography.

PubMed

Latha, Indu; Reichenbach, Stephen E; Tao, Qingping

2011-09-23

Comprehensive two-dimensional gas chromatography (GC×GC) is a powerful technology for separating complex samples. The typical goal of GC×GC peak detection is to aggregate data points of analyte peaks based on their retention times and intensities. Two techniques commonly used for two-dimensional peak detection are the two-step algorithm and the watershed algorithm. A recent study [4] compared the performance of the two-step and watershed algorithms for GC×GC data with retention-time shifts in the second-column separations. In that analysis, the peak retention-time shifts were corrected while applying the two-step algorithm but the watershed algorithm was applied without shift correction. The results indicated that the watershed algorithm has a higher probability of erroneously splitting a single two-dimensional peak than the two-step approach. This paper reconsiders the analysis by comparing peak-detection performance for resolved peaks after correcting retention-time shifts for both the two-step and watershed algorithms. Simulations with wide-ranging conditions indicate that when shift correction is employed with both algorithms, the watershed algorithm detects resolved peaks with greater accuracy than the two-step method. Copyright © 2011 Elsevier B.V. All rights reserved.

Advances in iterative non-uniformity correction techniques for infrared scene projection

NASA Astrophysics Data System (ADS)

Danielson, Tom; Franks, Greg; LaVeigne, Joe; Prewarski, Marcus; Nehring, Brian

2015-05-01

Santa Barbara Infrared (SBIR) is continually developing improved methods for non-uniformity correction (NUC) of its Infrared Scene Projectors (IRSPs) as part of its comprehensive efforts to achieve the best possible projector performance. The most recent step forward, Advanced Iterative NUC (AI-NUC), improves upon previous NUC approaches in several ways. The key to NUC performance is achieving the most accurate possible input drive-to-radiance output mapping for each emitter pixel. This requires many highly-accurate radiance measurements of emitter output, as well as sophisticated manipulation of the resulting data set. AI-NUC expands the available radiance data set to include all measurements made of emitter output at any point. In addition, it allows the user to efficiently manage that data for use in the construction of a new NUC table that is generated from an improved fit of the emitter response curve. Not only does this improve the overall NUC by offering more statistics for interpolation than previous approaches, it also simplifies the removal of erroneous data from the set so that it does not propagate into the correction tables. AI-NUC is implemented by SBIR's IRWindows4 automated test software as part its advanced turnkey IRSP product (the Calibration Radiometry System or CRS), which incorporates all necessary measurement, calibration and NUC table generation capabilities. By employing AI-NUC on the CRS, SBIR has demonstrated the best uniformity results on resistive emitter arrays to date.

Metadata-assisted nonuniform atmospheric scattering model of image haze removal for medium-altitude unmanned aerial vehicle

NASA Astrophysics Data System (ADS)

Liu, Chunlei; Ding, Wenrui; Li, Hongguang; Li, Jiankun

2017-09-01

Haze removal is a nontrivial work for medium-altitude unmanned aerial vehicle (UAV) image processing because of the effects of light absorption and scattering. The challenges are attributed mainly to image distortion and detail blur during the long-distance and large-scale imaging process. In our work, a metadata-assisted nonuniform atmospheric scattering model is proposed to deal with the aforementioned problems of medium-altitude UAV. First, to better describe the real atmosphere, we propose a nonuniform atmospheric scattering model according to the aerosol distribution, which directly benefits the image distortion correction. Second, considering the characteristics of long-distance imaging, we calculate the depth map, which is an essential clue to modeling, on the basis of UAV metadata information. An accurate depth map reduces the color distortion compared with the depth of field obtained by other existing methods based on priors or assumptions. Furthermore, we use an adaptive median filter to address the problem of fuzzy details caused by the global airlight value. Experimental results on both real flight and synthetic images demonstrate that our proposed method outperforms four other existing haze removal methods.

Optimal spiral phase modulation in Gerchberg-Saxton algorithm for wavefront reconstruction and correction

NASA Astrophysics Data System (ADS)

Baránek, M.; Běhal, J.; Bouchal, Z.

2018-01-01

In the phase retrieval applications, the Gerchberg-Saxton (GS) algorithm is widely used for the simplicity of implementation. This iterative process can advantageously be deployed in the combination with a spatial light modulator (SLM) enabling simultaneous correction of optical aberrations. As recently demonstrated, the accuracy and efficiency of the aberration correction using the GS algorithm can be significantly enhanced by a vortex image spot used as the target intensity pattern in the iterative process. Here we present an optimization of the spiral phase modulation incorporated into the GS algorithm.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Saur, Sigrun; Frengen, Jomar; Department of Oncology and Radiotherapy, St. Olavs University Hospital, N-7006 Trondheim

Film dosimetry using radiochromic EBT film in combination with a flatbed charge coupled device scanner is a useful method both for two-dimensional verification of intensity-modulated radiation treatment plans and for general quality assurance of treatment planning systems and linear accelerators. Unfortunately, the response over the scanner area is nonuniform, and when not corrected for, this results in a systematic error in the measured dose which is both dose and position dependent. In this study a novel method for background correction is presented. The method is based on the subtraction of a correction matrix, a matrix that is based on scansmore » of films that are irradiated to nine dose levels in the range 0.08-2.93 Gy. Because the response of the film is dependent on the film's orientation with respect to the scanner, correction matrices for both landscape oriented and portrait oriented scans were made. In addition to the background correction method, a full dose uncertainty analysis of the film dosimetry procedure was performed. This analysis takes into account the fit uncertainty of the calibration curve, the variation in response for different film sheets, the nonuniformity after background correction, and the noise in the scanned films. The film analysis was performed for film pieces of size 16x16 cm, all with the same lot number, and all irradiations were done perpendicular onto the films. The results show that the 2-sigma dose uncertainty at 2 Gy is about 5% and 3.5% for landscape and portrait scans, respectively. The uncertainty gradually increases as the dose decreases, but at 1 Gy the 2-sigma dose uncertainty is still as good as 6% and 4% for landscape and portrait scans, respectively. The study shows that film dosimetry using GafChromic EBT film, an Epson Expression 1680 Professional scanner and a dedicated background correction technique gives precise and accurate results. For the purpose of dosimetric verification, the calculated dose distribution can be compared with the film-measured dose distribution using a dose constraint of 4% (relative to the measured dose) for doses between 1 and 3 Gy. At lower doses, the dose constraint must be relaxed.« less

Non-uniform multivariate embedding to assess the information transfer in cardiovascular and cardiorespiratory variability series.

PubMed

Faes, Luca; Nollo, Giandomenico; Porta, Alberto

2012-03-01

The complexity of the short-term cardiovascular control prompts for the introduction of multivariate (MV) nonlinear time series analysis methods to assess directional interactions reflecting the underlying regulatory mechanisms. This study introduces a new approach for the detection of nonlinear Granger causality in MV time series, based on embedding the series by a sequential, non-uniform procedure, and on estimating the information flow from one series to another by means of the corrected conditional entropy. The approach is validated on short realizations of linear stochastic and nonlinear deterministic processes, and then evaluated on heart period, systolic arterial pressure and respiration variability series measured from healthy humans in the resting supine position and in the upright position after head-up tilt. Copyright © 2011 Elsevier Ltd. All rights reserved.

Efficient error correction for next-generation sequencing of viral amplicons

PubMed Central

2012-01-01

Background Next-generation sequencing allows the analysis of an unprecedented number of viral sequence variants from infected patients, presenting a novel opportunity for understanding virus evolution, drug resistance and immune escape. However, sequencing in bulk is error prone. Thus, the generated data require error identification and correction. Most error-correction methods to date are not optimized for amplicon analysis and assume that the error rate is randomly distributed. Recent quality assessment of amplicon sequences obtained using 454-sequencing showed that the error rate is strongly linked to the presence and size of homopolymers, position in the sequence and length of the amplicon. All these parameters are strongly sequence specific and should be incorporated into the calibration of error-correction algorithms designed for amplicon sequencing. Results In this paper, we present two new efficient error correction algorithms optimized for viral amplicons: (i) k-mer-based error correction (KEC) and (ii) empirical frequency threshold (ET). Both were compared to a previously published clustering algorithm (SHORAH), in order to evaluate their relative performance on 24 experimental datasets obtained by 454-sequencing of amplicons with known sequences. All three algorithms show similar accuracy in finding true haplotypes. However, KEC and ET were significantly more efficient than SHORAH in removing false haplotypes and estimating the frequency of true ones. Conclusions Both algorithms, KEC and ET, are highly suitable for rapid recovery of error-free haplotypes obtained by 454-sequencing of amplicons from heterogeneous viruses. The implementations of the algorithms and data sets used for their testing are available at: http://alan.cs.gsu.edu/NGS/?q=content/pyrosequencing-error-correction-algorithm PMID:22759430

Efficient error correction for next-generation sequencing of viral amplicons.

PubMed

Skums, Pavel; Dimitrova, Zoya; Campo, David S; Vaughan, Gilberto; Rossi, Livia; Forbi, Joseph C; Yokosawa, Jonny; Zelikovsky, Alex; Khudyakov, Yury

2012-06-25

Next-generation sequencing allows the analysis of an unprecedented number of viral sequence variants from infected patients, presenting a novel opportunity for understanding virus evolution, drug resistance and immune escape. However, sequencing in bulk is error prone. Thus, the generated data require error identification and correction. Most error-correction methods to date are not optimized for amplicon analysis and assume that the error rate is randomly distributed. Recent quality assessment of amplicon sequences obtained using 454-sequencing showed that the error rate is strongly linked to the presence and size of homopolymers, position in the sequence and length of the amplicon. All these parameters are strongly sequence specific and should be incorporated into the calibration of error-correction algorithms designed for amplicon sequencing. In this paper, we present two new efficient error correction algorithms optimized for viral amplicons: (i) k-mer-based error correction (KEC) and (ii) empirical frequency threshold (ET). Both were compared to a previously published clustering algorithm (SHORAH), in order to evaluate their relative performance on 24 experimental datasets obtained by 454-sequencing of amplicons with known sequences. All three algorithms show similar accuracy in finding true haplotypes. However, KEC and ET were significantly more efficient than SHORAH in removing false haplotypes and estimating the frequency of true ones. Both algorithms, KEC and ET, are highly suitable for rapid recovery of error-free haplotypes obtained by 454-sequencing of amplicons from heterogeneous viruses.The implementations of the algorithms and data sets used for their testing are available at: http://alan.cs.gsu.edu/NGS/?q=content/pyrosequencing-error-correction-algorithm.

An Eccentricity Based Data Routing Protocol with Uniform Node Distribution in 3D WSN.

PubMed

Hosen, A S M Sanwar; Cho, Gi Hwan; Ra, In-Ho

2017-09-16

Due to nonuniform node distribution, the energy consumption of nodes are imbalanced in clustering-based wireless sensor networks (WSNs). It might have more impact when nodes are deployed in a three-dimensional (3D) environment. In this regard, we propose the eccentricity based data routing (EDR) protocol in a 3D WSN with uniform node distribution. It includes network partitions called 3D subspaces/clusters of equal member nodes, an energy-efficient routing centroid (RC) nodes election and data routing algorithm. The RC nodes election conducts in a quasi-static nature until a certain period unlike the periodic cluster heads election of typical clustering-based routing. It not only reduces the energy consumption of nodes during the election phase, but also in intra-communication. At the same time, the routing algorithm selects a forwarding node in such a way that balances the energy consumption among RC nodes and reduces the number of hops towards the sink. The simulation results validate and ensure the performance supremacy of the EDR protocol compared to existing protocols in terms of various metrics such as steady state and network lifetime in particular. Meanwhile, the results show the EDR is more robust in uniform node distribution compared to nonuniform.

An Eccentricity Based Data Routing Protocol with Uniform Node Distribution in 3D WSN

PubMed Central

Hosen, A. S. M. Sanwar; Cho, Gi Hwan; Ra, In-Ho

2017-01-01

Due to nonuniform node distribution, the energy consumption of nodes are imbalanced in clustering-based wireless sensor networks (WSNs). It might have more impact when nodes are deployed in a three-dimensional (3D) environment. In this regard, we propose the eccentricity based data routing (EDR) protocol in a 3D WSN with uniform node distribution. It includes network partitions called 3D subspaces/clusters of equal member nodes, an energy-efficient routing centroid (RC) nodes election and data routing algorithm. The RC nodes election conducts in a quasi-static nature until a certain period unlike the periodic cluster heads election of typical clustering-based routing. It not only reduces the energy consumption of nodes during the election phase, but also in intra-communication. At the same time, the routing algorithm selects a forwarding node in such a way that balances the energy consumption among RC nodes and reduces the number of hops towards the sink. The simulation results validate and ensure the performance supremacy of the EDR protocol compared to existing protocols in terms of various metrics such as steady state and network lifetime in particular. Meanwhile, the results show the EDR is more robust in uniform node distribution compared to nonuniform. PMID:28926958

Real-time demonstration hardware for enhanced DPCM video compression algorithm

NASA Technical Reports Server (NTRS)

Bizon, Thomas P.; Whyte, Wayne A., Jr.; Marcopoli, Vincent R.

1992-01-01

The lack of available wideband digital links as well as the complexity of implementation of bandwidth efficient digital video CODECs (encoder/decoder) has worked to keep the cost of digital television transmission too high to compete with analog methods. Terrestrial and satellite video service providers, however, are now recognizing the potential gains that digital video compression offers and are proposing to incorporate compression systems to increase the number of available program channels. NASA is similarly recognizing the benefits of and trend toward digital video compression techniques for transmission of high quality video from space and therefore, has developed a digital television bandwidth compression algorithm to process standard National Television Systems Committee (NTSC) composite color television signals. The algorithm is based on differential pulse code modulation (DPCM), but additionally utilizes a non-adaptive predictor, non-uniform quantizer and multilevel Huffman coder to reduce the data rate substantially below that achievable with straight DPCM. The non-adaptive predictor and multilevel Huffman coder combine to set this technique apart from other DPCM encoding algorithms. All processing is done on a intra-field basis to prevent motion degradation and minimize hardware complexity. Computer simulations have shown the algorithm will produce broadcast quality reconstructed video at an average transmission rate of 1.8 bits/pixel. Hardware implementation of the DPCM circuit, non-adaptive predictor and non-uniform quantizer has been completed, providing realtime demonstration of the image quality at full video rates. Video sampling/reconstruction circuits have also been constructed to accomplish the analog video processing necessary for the real-time demonstration. Performance results for the completed hardware compare favorably with simulation results. Hardware implementation of the multilevel Huffman encoder/decoder is currently under development along with implementation of a buffer control algorithm to accommodate the variable data rate output of the multilevel Huffman encoder. A video CODEC of this type could be used to compress NTSC color television signals where high quality reconstruction is desirable (e.g., Space Station video transmission, transmission direct-to-the-home via direct broadcast satellite systems or cable television distribution to system headends and direct-to-the-home).

Scatter correction in cone-beam CT via a half beam blocker technique allowing simultaneous acquisition of scatter and image information

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lee, Ho; Xing Lei; Lee, Rena

2012-05-15

Purpose: X-ray scatter incurred to detectors degrades the quality of cone-beam computed tomography (CBCT) and represents a problem in volumetric image guided and adaptive radiation therapy. Several methods using a beam blocker for the estimation and subtraction of scatter have been proposed. However, due to missing information resulting from the obstruction of the blocker, such methods require dual scanning or dynamically moving blocker to obtain a complete volumetric image. Here, we propose a half beam blocker-based approach, in conjunction with a total variation (TV) regularized Feldkamp-Davis-Kress (FDK) algorithm, to correct scatter-induced artifacts by simultaneously acquiring image and scatter information frommore » a single-rotation CBCT scan. Methods: A half beam blocker, comprising lead strips, is used to simultaneously acquire image data on one side of the projection data and scatter data on the other half side. One-dimensional cubic B-Spline interpolation/extrapolation is applied to derive patient specific scatter information by using the scatter distributions on strips. The estimated scatter is subtracted from the projection image acquired at the opposite view. With scatter-corrected projections where this subtraction is completed, the FDK algorithm based on a cosine weighting function is performed to reconstruct CBCT volume. To suppress the noise in the reconstructed CBCT images produced by geometric errors between two opposed projections and interpolated scatter information, total variation regularization is applied by a minimization using a steepest gradient descent optimization method. The experimental studies using Catphan504 and anthropomorphic phantoms were carried out to evaluate the performance of the proposed scheme. Results: The scatter-induced shading artifacts were markedly suppressed in CBCT using the proposed scheme. Compared with CBCT without a blocker, the nonuniformity value was reduced from 39.3% to 3.1%. The root mean square error relative to values inside the regions of interest selected from a benchmark scatter free image was reduced from 50 to 11.3. The TV regularization also led to a better contrast-to-noise ratio. Conclusions: An asymmetric half beam blocker-based FDK acquisition and reconstruction technique has been established. The proposed scheme enables simultaneous detection of patient specific scatter and complete volumetric CBCT reconstruction without additional requirements such as prior images, dual scans, or moving strips.« less

Meterological correction of optical beam refraction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lukin, V.P.; Melamud, A.E.; Mironov, V.L.

1986-02-01

At the present time laser reference systems (LRS's) are widely used in agrotechnology and in geodesy. The demands for accuracy in LRS's constantly increase, so that a study of error sources and means of considering and correcting them is of practical importance. A theoretical algorithm is presented for correction of the regular component of atmospheric refraction for various types of hydrostatic stability of the atmospheric layer adjacent to the earth. The algorithm obtained is compared to regression equations obtained by processing an experimental data base. It is shown that within admissible accuracy limits the refraction correction algorithm obtained permits constructionmore » of correction tables and design of optical systems with programmable correction for atmospheric refraction on the basis of rapid meteorological measurements.« less

Development of a novel three-dimensional deformable mirror with removable influence functions for high precision wavefront correction in adaptive optics system

NASA Astrophysics Data System (ADS)

Huang, Lei; Zhou, Chenlu; Gong, Mali; Ma, Xingkun; Bian, Qi

2016-07-01

Deformable mirror is a widely used wavefront corrector in adaptive optics system, especially in astronomical, image and laser optics. A new structure of DM-3D DM is proposed, which has removable actuators and can correct different aberrations with different actuator arrangements. A 3D DM consists of several reflection mirrors. Every mirror has a single actuator and is independent of each other. Two kinds of actuator arrangement algorithm are compared: random disturbance algorithm (RDA) and global arrangement algorithm (GAA). Correction effects of these two algorithms and comparison are analyzed through numerical simulation. The simulation results show that 3D DM with removable actuators can obviously improve the correction effects.

A neural algorithm for the non-uniform and adaptive sampling of biomedical data.

PubMed

Mesin, Luca

2016-04-01

Body sensors are finding increasing applications in the self-monitoring for health-care and in the remote surveillance of sensitive people. The physiological data to be sampled can be non-stationary, with bursts of high amplitude and frequency content providing most information. Such data could be sampled efficiently with a non-uniform schedule that increases the sampling rate only during activity bursts. A real time and adaptive algorithm is proposed to select the sampling rate, in order to reduce the number of measured samples, but still recording the main information. The algorithm is based on a neural network which predicts the subsequent samples and their uncertainties, requiring a measurement only when the risk of the prediction is larger than a selectable threshold. Four examples of application to biomedical data are discussed: electromyogram, electrocardiogram, electroencephalogram, and body acceleration. Sampling rates are reduced under the Nyquist limit, still preserving an accurate representation of the data and of their power spectral densities (PSD). For example, sampling at 60% of the Nyquist frequency, the percentage average rectified errors in estimating the signals are on the order of 10% and the PSD is fairly represented, until the highest frequencies. The method outperforms both uniform sampling and compressive sensing applied to the same data. The discussed method allows to go beyond Nyquist limit, still preserving the information content of non-stationary biomedical signals. It could find applications in body sensor networks to lower the number of wireless communications (saving sensor power) and to reduce the occupation of memory. Copyright © 2016 Elsevier Ltd. All rights reserved.

A survey of provably correct fault-tolerant clock synchronization techniques

NASA Technical Reports Server (NTRS)

Butler, Ricky W.

1988-01-01

Six provably correct fault-tolerant clock synchronization algorithms are examined. These algorithms are all presented in the same notation to permit easier comprehension and comparison. The advantages and disadvantages of the different techniques are examined and issues related to the implementation of these algorithms are discussed. The paper argues for the use of such algorithms in life-critical applications.

Numerical algorithms for scatter-to-attenuation reconstruction in PET: empirical comparison of convergence, acceleration, and the effect of subsets.

PubMed

Berker, Yannick; Karp, Joel S; Schulz, Volkmar

2017-09-01

The use of scattered coincidences for attenuation correction of positron emission tomography (PET) data has recently been proposed. For practical applications, convergence speeds require further improvement, yet there exists a trade-off between convergence speed and the risk of non-convergence. In this respect, a maximum-likelihood gradient-ascent (MLGA) algorithm and a two-branch back-projection (2BP), which was previously proposed, were evaluated. MLGA was combined with the Armijo step size rule; and accelerated using conjugate gradients, Nesterov's momentum method, and data subsets of different sizes. In 2BP, we varied the subset size, an important determinant of convergence speed and computational burden. We used three sets of simulation data to evaluate the impact of a spatial scale factor. The Armijo step size allowed 10-fold increased step sizes compared to native MLGA. Conjugate gradients and Nesterov momentum lead to slightly faster, yet non-uniform convergence; improvements were mostly confined to later iterations, possibly due to the non-linearity of the problem. MLGA with data subsets achieved faster, uniform, and predictable convergence, with a speed-up factor equivalent to the number of subsets and no increase in computational burden. By contrast, 2BP computational burden increased linearly with the number of subsets due to repeated evaluation of the objective function, and convergence was limited to the case of many (and therefore small) subsets, which resulted in high computational burden. Possibilities of improving 2BP appear limited. While general-purpose acceleration methods appear insufficient for MLGA, results suggest that data subsets are a promising way of improving MLGA performance.

Simulation of co-phase error correction of optical multi-aperture imaging system based on stochastic parallel gradient decent algorithm

NASA Astrophysics Data System (ADS)

He, Xiaojun; Ma, Haotong; Luo, Chuanxin

2016-10-01

The optical multi-aperture imaging system is an effective way to magnify the aperture and increase the resolution of telescope optical system, the difficulty of which lies in detecting and correcting of co-phase error. This paper presents a method based on stochastic parallel gradient decent algorithm (SPGD) to correct the co-phase error. Compared with the current method, SPGD method can avoid detecting the co-phase error. This paper analyzed the influence of piston error and tilt error on image quality based on double-aperture imaging system, introduced the basic principle of SPGD algorithm, and discuss the influence of SPGD algorithm's key parameters (the gain coefficient and the disturbance amplitude) on error control performance. The results show that SPGD can efficiently correct the co-phase error. The convergence speed of the SPGD algorithm is improved with the increase of gain coefficient and disturbance amplitude, but the stability of the algorithm reduced. The adaptive gain coefficient can solve this problem appropriately. This paper's results can provide the theoretical reference for the co-phase error correction of the multi-aperture imaging system.

A robust generalized fuzzy operator approach to film contrast correction in digital subtraction radiography.

PubMed

Leung, Chung-Chu

2006-03-01

Digital subtraction radiography requires close matching of the contrast in each pair of X-ray images to be subtracted. Previous studies have shown that nonparametric contrast/brightness correction methods using the cumulative density function (CDF) and its improvements, which are based on gray-level transformation associated with the pixel histogram, perform well in uniform contrast/brightness difference conditions. However, for radiographs with nonuniform contrast/ brightness, the CDF produces unsatisfactory results. In this paper, we propose a new approach in contrast correction based on the generalized fuzzy operator with least square method. The result shows that 50% of the contrast/brightness errors can be corrected using this approach when the contrast/brightness difference between a radiographic pair is 10 U. A comparison of our approach with that of CDF is presented, and this modified GFO method produces better contrast normalization results than the CDF approach.

Removal of ring artifacts in microtomography by characterization of scintillator variations.

PubMed

Vågberg, William; Larsson, Jakob C; Hertz, Hans M

2017-09-18

Ring artifacts reduce image quality in tomography, and arise from faulty detector calibration. In microtomography, we have identified that ring artifacts can arise due to high-spatial frequency variations in the scintillator thickness. Such variations are normally removed by a flat-field correction. However, as the spectrum changes, e.g. due to beam hardening, the detector response varies non-uniformly introducing ring artifacts that persist after flat-field correction. In this paper, we present a method to correct for ring artifacts from variations in scintillator thickness by using a simple method to characterize the local scintillator response. The method addresses the actual physical cause of the ring artifacts, in contrary to many other ring artifact removal methods which rely only on image post-processing. By applying the technique to an experimental phantom tomography, we show that ring artifacts are strongly reduced compared to only making a flat-field correction.

Efficiency for unretained solutes in packed column supercritical fluid chromatography. I. Theory for isothermal conditions and correction factors for carbon dioxide.

PubMed

Poe, Donald P

2005-06-17

A general theory for efficiency of nonuniform columns with compressible mobile phase fluids is applied to the elution of an unretained solute in packed-column supercritical fluid chromatography (pSFC). The theoretical apparent plate height under isothermal conditions is given by the Knox equation multiplied by a compressibility correction factor f1, which is equal to the ratio of the temporal-to-spatial average densities of the mobile phase. If isothermal conditions are maintained, large pressure drops in pSFC should not result in excessive efficiency losses for elution of unretained solutes.

Algorithms for calculating mass-velocity and Darwin relativistic corrections with n-electron explicitly correlated Gaussians with shifted centers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stanke, Monika, E-mail: monika@fizyka.umk.pl; Palikot, Ewa, E-mail: epalikot@doktorant.umk.pl; Adamowicz, Ludwik, E-mail: ludwik@email.arizona.edu

2016-05-07

Algorithms for calculating the leading mass-velocity (MV) and Darwin (D) relativistic corrections are derived for electronic wave functions expanded in terms of n-electron explicitly correlated Gaussian functions with shifted centers and without pre-exponential angular factors. The algorithms are implemented and tested in calculations of MV and D corrections for several points on the ground-state potential energy curves of the H{sub 2} and LiH molecules. The algorithms are general and can be applied in calculations of systems with an arbitrary number of electrons.

Correction of oral contrast artifacts in CT-based attenuation correction of PET images using an automated segmentation algorithm.

PubMed

Ahmadian, Alireza; Ay, Mohammad R; Bidgoli, Javad H; Sarkar, Saeed; Zaidi, Habib

2008-10-01

Oral contrast is usually administered in most X-ray computed tomography (CT) examinations of the abdomen and the pelvis as it allows more accurate identification of the bowel and facilitates the interpretation of abdominal and pelvic CT studies. However, the misclassification of contrast medium with high-density bone in CT-based attenuation correction (CTAC) is known to generate artifacts in the attenuation map (mumap), thus resulting in overcorrection for attenuation of positron emission tomography (PET) images. In this study, we developed an automated algorithm for segmentation and classification of regions containing oral contrast medium to correct for artifacts in CT-attenuation-corrected PET images using the segmented contrast correction (SCC) algorithm. The proposed algorithm consists of two steps: first, high CT number object segmentation using combined region- and boundary-based segmentation and second, object classification to bone and contrast agent using a knowledge-based nonlinear fuzzy classifier. Thereafter, the CT numbers of pixels belonging to the region classified as contrast medium are substituted with their equivalent effective bone CT numbers using the SCC algorithm. The generated CT images are then down-sampled followed by Gaussian smoothing to match the resolution of PET images. A piecewise calibration curve was then used to convert CT pixel values to linear attenuation coefficients at 511 keV. The visual assessment of segmented regions performed by an experienced radiologist confirmed the accuracy of the segmentation and classification algorithms for delineation of contrast-enhanced regions in clinical CT images. The quantitative analysis of generated mumaps of 21 clinical CT colonoscopy datasets showed an overestimation ranging between 24.4% and 37.3% in the 3D-classified regions depending on their volume and the concentration of contrast medium. Two PET/CT studies known to be problematic demonstrated the applicability of the technique in clinical setting. More importantly, correction of oral contrast artifacts improved the readability and interpretation of the PET scan and showed substantial decrease of the SUV (104.3%) after correction. An automated segmentation algorithm for classification of irregular shapes of regions containing contrast medium was developed for wider applicability of the SCC algorithm for correction of oral contrast artifacts during the CTAC procedure. The algorithm is being refined and further validated in clinical setting.

Cardiac MRI in mice at 9.4 Tesla with a transmit-receive surface coil and a cardiac-tailored intensity-correction algorithm.

PubMed

Sosnovik, David E; Dai, Guangping; Nahrendorf, Matthias; Rosen, Bruce R; Seethamraju, Ravi

2007-08-01

To evaluate the use of a transmit-receive surface (TRS) coil and a cardiac-tailored intensity-correction algorithm for cardiac MRI in mice at 9.4 Tesla (9.4T). Fast low-angle shot (FLASH) cines, with and without delays alternating with nutations for tailored excitation (DANTE) tagging, were acquired in 13 mice. An intensity-correction algorithm was developed to compensate for the sensitivity profile of the surface coil, and was tailored to account for the unique distribution of noise and flow artifacts in cardiac MR images. Image quality was extremely high and allowed fine structures such as trabeculations, valve cusps, and coronary arteries to be clearly visualized. The tag lines created with the surface coil were also sharp and clearly visible. Application of the intensity-correction algorithm improved signal intensity, tissue contrast, and image quality even further. Importantly, the cardiac-tailored properties of the correction algorithm prevented noise and flow artifacts from being significantly amplified. The feasibility and value of cardiac MRI in mice with a TRS coil has been demonstrated. In addition, a cardiac-tailored intensity-correction algorithm has been developed and shown to improve image quality even further. The use of these techniques could produce significant potential benefits over a broad range of scanners, coil configurations, and field strengths. (c) 2007 Wiley-Liss, Inc.

An Efficient Correction Algorithm for Eliminating Image Misalignment Effects on Co-Phasing Measurement Accuracy for Segmented Active Optics Systems

PubMed Central

Yue, Dan; Xu, Shuyan; Nie, Haitao; Wang, Zongyang

2016-01-01

The misalignment between recorded in-focus and out-of-focus images using the Phase Diversity (PD) algorithm leads to a dramatic decline in wavefront detection accuracy and image recovery quality for segmented active optics systems. This paper demonstrates the theoretical relationship between the image misalignment and tip-tilt terms in Zernike polynomials of the wavefront phase for the first time, and an efficient two-step alignment correction algorithm is proposed to eliminate these misalignment effects. This algorithm processes a spatial 2-D cross-correlation of the misaligned images, revising the offset to 1 or 2 pixels and narrowing the search range for alignment. Then, it eliminates the need for subpixel fine alignment to achieve adaptive correction by adding additional tip-tilt terms to the Optical Transfer Function (OTF) of the out-of-focus channel. The experimental results demonstrate the feasibility and validity of the proposed correction algorithm to improve the measurement accuracy during the co-phasing of segmented mirrors. With this alignment correction, the reconstructed wavefront is more accurate, and the recovered image is of higher quality. PMID:26934045

A new efficient method for color image compression based on visual attention mechanism

NASA Astrophysics Data System (ADS)

Shao, Xiaoguang; Gao, Kun; Lv, Lily; Ni, Guoqiang

2010-11-01

One of the key procedures in color image compression is to extract its region of interests (ROIs) and evaluate different compression ratios. A new non-uniform color image compression algorithm with high efficiency is proposed in this paper by using a biology-motivated selective attention model for the effective extraction of ROIs in natural images. When the ROIs have been extracted and labeled in the image, the subsequent work is to encode the ROIs and other regions with different compression ratios via popular JPEG algorithm. Furthermore, experiment results and quantitative and qualitative analysis in the paper show perfect performance when comparing with other traditional color image compression approaches.

Integrated-Circuit Pseudorandom-Number Generator

NASA Technical Reports Server (NTRS)

Steelman, James E.; Beasley, Jeff; Aragon, Michael; Ramirez, Francisco; Summers, Kenneth L.; Knoebel, Arthur

1992-01-01

Integrated circuit produces 8-bit pseudorandom numbers from specified probability distribution, at rate of 10 MHz. Use of Boolean logic, circuit implements pseudorandom-number-generating algorithm. Circuit includes eight 12-bit pseudorandom-number generators, outputs are uniformly distributed. 8-bit pseudorandom numbers satisfying specified nonuniform probability distribution are generated by processing uniformly distributed outputs of eight 12-bit pseudorandom-number generators through "pipeline" of D flip-flops, comparators, and memories implementing conditional probabilities on zeros and ones.

GafChromic EBT film dosimetry with flatbed CCD scanner: a novel background correction method and full dose uncertainty analysis.

PubMed

Saur, Sigrun; Frengen, Jomar

2008-07-01

Film dosimetry using radiochromic EBT film in combination with a flatbed charge coupled device scanner is a useful method both for two-dimensional verification of intensity-modulated radiation treatment plans and for general quality assurance of treatment planning systems and linear accelerators. Unfortunately, the response over the scanner area is nonuniform, and when not corrected for, this results in a systematic error in the measured dose which is both dose and position dependent. In this study a novel method for background correction is presented. The method is based on the subtraction of a correction matrix, a matrix that is based on scans of films that are irradiated to nine dose levels in the range 0.08-2.93 Gy. Because the response of the film is dependent on the film's orientation with respect to the scanner, correction matrices for both landscape oriented and portrait oriented scans were made. In addition to the background correction method, a full dose uncertainty analysis of the film dosimetry procedure was performed. This analysis takes into account the fit uncertainty of the calibration curve, the variation in response for different film sheets, the nonuniformity after background correction, and the noise in the scanned films. The film analysis was performed for film pieces of size 16 x 16 cm, all with the same lot number, and all irradiations were done perpendicular onto the films. The results show that the 2-sigma dose uncertainty at 2 Gy is about 5% and 3.5% for landscape and portrait scans, respectively. The uncertainty gradually increases as the dose decreases, but at 1 Gy the 2-sigma dose uncertainty is still as good as 6% and 4% for landscape and portrait scans, respectively. The study shows that film dosimetry using GafChromic EBT film, an Epson Expression 1680 Professional scanner and a dedicated background correction technique gives precise and accurate results. For the purpose of dosimetric verification, the calculated dose distribution can be compared with the film-measured dose distribution using a dose constraint of 4% (relative to the measured dose) for doses between 1 and 3 Gy. At lower doses, the dose constraint must be relaxed.

Algorithm Updates for the Fourth SeaWiFS Data Reprocessing

NASA Technical Reports Server (NTRS)

Hooker, Stanford, B. (Editor); Firestone, Elaine R. (Editor); Patt, Frederick S.; Barnes, Robert A.; Eplee, Robert E., Jr.; Franz, Bryan A.; Robinson, Wayne D.; Feldman, Gene Carl; Bailey, Sean W.

2003-01-01

The efforts to improve the data quality for the Sea-viewing Wide Field-of-view Sensor (SeaWiFS) data products have continued, following the third reprocessing of the global data set in May 2000. Analyses have been ongoing to address all aspects of the processing algorithms, particularly the calibration methodologies, atmospheric correction, and data flagging and masking. All proposed changes were subjected to rigorous testing, evaluation and validation. The results of these activities culminated in the fourth reprocessing, which was completed in July 2002. The algorithm changes, which were implemented for this reprocessing, are described in the chapters of this volume. Chapter 1 presents an overview of the activities leading up to the fourth reprocessing, and summarizes the effects of the changes. Chapter 2 describes the modifications to the on-orbit calibration, specifically the focal plane temperature correction and the temporal dependence. Chapter 3 describes the changes to the vicarious calibration, including the stray light correction to the Marine Optical Buoy (MOBY) data and improved data screening procedures. Chapter 4 describes improvements to the near-infrared (NIR) band correction algorithm. Chapter 5 describes changes to the atmospheric correction and the oceanic property retrieval algorithms, including out-of-band corrections, NIR noise reduction, and handling of unusual conditions. Chapter 6 describes various changes to the flags and masks, to increase the number of valid retrievals, improve the detection of the flag conditions, and add new flags. Chapter 7 describes modifications to the level-la and level-3 algorithms, to improve the navigation accuracy, correct certain types of spacecraft time anomalies, and correct a binning logic error. Chapter 8 describes the algorithm used to generate the SeaWiFS photosynthetically available radiation (PAR) product. Chapter 9 describes a coupled ocean-atmosphere model, which is used in one of the changes described in Chapter 4. Finally, Chapter 10 describes a comparison of results from the third and fourth reprocessings along the US. Northeast coast.

Stochastic Dynamics of Lexicon Learning in an Uncertain and Nonuniform World

NASA Astrophysics Data System (ADS)

Reisenauer, Rainer; Smith, Kenny; Blythe, Richard A.

2013-06-01

We study the time taken by a language learner to correctly identify the meaning of all words in a lexicon under conditions where many plausible meanings can be inferred whenever a word is uttered. We show that the most basic form of cross-situational learning—whereby information from multiple episodes is combined to eliminate incorrect meanings—can perform badly when words are learned independently and meanings are drawn from a nonuniform distribution. If learners further assume that no two words share a common meaning, we find a phase transition between a maximally efficient learning regime, where the learning time is reduced to the shortest it can possibly be, and a partially efficient regime where incorrect candidate meanings for words persist at late times. We obtain exact results for the word-learning process through an equivalence to a statistical mechanical problem of enumerating loops in the space of word-meaning mappings.

Reduction of intensity variations on a photovoltaic array with compound parabolic concentrators

NASA Technical Reports Server (NTRS)

Greenman, P.; Ogallagher, J.; Winston, R.; Costogue, E.

1979-01-01

The reduction of nonuniformities in the intensity distribution of light focused on a photovoltaic array by a compound parabolic concentrator is investigated. The introduction of small distortions into the surfaces of the reflector in order to diffuse the incident collimated light to fill the angular acceptance of the concentrator is calculated by means of ray tracing to decrease the irradiance nonuniformity at the cost of a lowered effective concentration of the concentrator. Measurements of the intensity distribution on a scale test model in terrestrial sunlight with corrugated aluminized mylar reflectors are shown to be in good agreement with the ray tracing results. A two-stage concentrator consisting of a focusing primary and a nonimaging secondary is also shown to result in a fairly uniform intensity distribution except in the case of a 4-deg incidence angle, which may be corrected by the introduction of distortions into one or both concentration stages.

Phase 2 development of Great Lakes algorithms for Nimbus-7 coastal zone color scanner

NASA Technical Reports Server (NTRS)

Tanis, Fred J.

1984-01-01

A series of experiments have been conducted in the Great Lakes designed to evaluate the application of the NIMBUS-7 Coastal Zone Color Scanner (CZCS). Atmospheric and water optical models were used to relate surface and subsurface measurements to satellite measured radiances. Absorption and scattering measurements were reduced to obtain a preliminary optical model for the Great Lakes. Algorithms were developed for geometric correction, correction for Rayleigh and aerosol path radiance, and prediction of chlorophyll-a pigment and suspended mineral concentrations. The atmospheric algorithm developed compared favorably with existing algorithms and was the only algorithm found to adequately predict the radiance variations in the 670 nm band. The atmospheric correction algorithm developed was designed to extract needed algorithm parameters from the CZCS radiance values. The Gordon/NOAA ocean algorithms could not be demonstrated to work for Great Lakes waters. Predicted values of chlorophyll-a concentration compared favorably with expected and measured data for several areas of the Great Lakes.

Constraining earthquake source inversions with GPS data: 1. Resolution-based removal of artifacts

USGS Publications Warehouse

Page, M.T.; Custodio, S.; Archuleta, R.J.; Carlson, J.M.

2009-01-01

We present a resolution analysis of an inversion of GPS data from the 2004 Mw 6.0 Parkfield earthquake. This earthquake was recorded at thirteen 1-Hz GPS receivers, which provides for a truly coseismic data set that can be used to infer the static slip field. We find that the resolution of our inverted slip model is poor at depth and near the edges of the modeled fault plane that are far from GPS receivers. The spatial heterogeneity of the model resolution in the static field inversion leads to artifacts in poorly resolved areas of the fault plane. These artifacts look qualitatively similar to asperities commonly seen in the final slip models of earthquake source inversions, but in this inversion they are caused by a surplus of free parameters. The location of the artifacts depends on the station geometry and the assumed velocity structure. We demonstrate that a nonuniform gridding of model parameters on the fault can remove these artifacts from the inversion. We generate a nonuniform grid with a grid spacing that matches the local resolution length on the fault and show that it outperforms uniform grids, which either generate spurious structure in poorly resolved regions or lose recoverable information in well-resolved areas of the fault. In a synthetic test, the nonuniform grid correctly averages slip in poorly resolved areas of the fault while recovering small-scale structure near the surface. Finally, we present an inversion of the Parkfield GPS data set on the nonuniform grid and analyze the errors in the final model. Copyright 2009 by the American Geophysical Union.

The SEASAT altimeter wet tropospheric range correction revisited

NASA Technical Reports Server (NTRS)

Tapley, D. B.; Lundberg, J. B.; Born, G. H.

1984-01-01

An expanded set of radiosonde observations was used to calculate the wet tropospheric range correction for the brightness temperature measurements of the SEASAT scanning multichannel microwave radiometer (SMMR). The accuracy of the conventional algorithm for wet tropospheric range correction was evaluated. On the basis of the expanded observational data set, the algorithm was found to have a bias of about 1.0 cm, and a standard deviation 2.8 cm. In order to improve the algorithm, the exact linear, quadratic and logarithmic relationships between brightness temperatures and range corrections were determined. Various combinations of measurement parameters were used to reduce the standard deviation between SEASAT SMMR and radiosonde observations to about 2.1 cm. The performance of various range correction formulas is compared in a table.

Evaluation and analysis of Seasat-A scanning multichannel Microwave Radiometer (SMMR) Antenna Pattern Correction (APC) algorithm

NASA Technical Reports Server (NTRS)

Kitzis, J. L.; Kitzis, S. N.

1979-01-01

The brightness temperature data produced by the SMMR final Antenna Pattern Correction (APC) algorithm is discussed. The algorithm consisted of: (1) a direct comparison of the outputs of the final and interim APC algorithms; and (2) an analysis of a possible relationship between observed cross track gradients in the interim brightness temperatures and the asymmetry in the antenna temperature data. Results indicate a bias between the brightness temperature produced by the final and interim APC algorithm.

Atmospheric correction of the ocean color observations of the medium resolution imaging spectrometer (MERIS)

NASA Astrophysics Data System (ADS)

Antoine, David; Morel, Andre

1997-02-01

An algorithm is proposed for the atmospheric correction of the ocean color observations by the MERIS instrument. The principle of the algorithm, which accounts for all multiple scattering effects, is presented. The algorithm is then teste, and its accuracy assessed in terms of errors in the retrieved marine reflectances.

Adaptive Wiener filter super-resolution of color filter array images.

PubMed

Karch, Barry K; Hardie, Russell C

2013-08-12

Digital color cameras using a single detector array with a Bayer color filter array (CFA) require interpolation or demosaicing to estimate missing color information and provide full-color images. However, demosaicing does not specifically address fundamental undersampling and aliasing inherent in typical camera designs. Fast non-uniform interpolation based super-resolution (SR) is an attractive approach to reduce or eliminate aliasing and its relatively low computational load is amenable to real-time applications. The adaptive Wiener filter (AWF) SR algorithm was initially developed for grayscale imaging and has not previously been applied to color SR demosaicing. Here, we develop a novel fast SR method for CFA cameras that is based on the AWF SR algorithm and uses global channel-to-channel statistical models. We apply this new method as a stand-alone algorithm and also as an initialization image for a variational SR algorithm. This paper presents the theoretical development of the color AWF SR approach and applies it in performance comparisons to other SR techniques for both simulated and real data.

A Two-Dimensional Linear Bicharacteristic FDTD Method

NASA Technical Reports Server (NTRS)

Beggs, John H.

2002-01-01

The linear bicharacteristic scheme (LBS) was originally developed to improve unsteady solutions in computational acoustics and aeroacoustics. The LBS has previously been extended to treat lossy materials for one-dimensional problems. It is a classical leapfrog algorithm, but is combined with upwind bias in the spatial derivatives. This approach preserves the time-reversibility of the leapfrog algorithm, which results in no dissipation, and it permits more flexibility by the ability to adopt a characteristic based method. The use of characteristic variables allows the LBS to include the Perfectly Matched Layer boundary condition with no added storage or complexity. The LBS offers a central storage approach with lower dispersion than the Yee algorithm, plus it generalizes much easier to nonuniform grids. It has previously been applied to two and three-dimensional free-space electromagnetic propagation and scattering problems. This paper extends the LBS to the two-dimensional case. Results are presented for point source radiation problems, and the FDTD algorithm is chosen as a convenient reference for comparison.

Multiband corrections for the semi-classical simulation of interband tunneling in GaAs tunnel junctions

NASA Astrophysics Data System (ADS)

Louarn, K.; Claveau, Y.; Hapiuk, D.; Fontaine, C.; Arnoult, A.; Taliercio, T.; Licitra, C.; Piquemal, F.; Bounouh, A.; Cavassilas, N.; Almuneau, G.

2017-09-01

The aim of this study is to investigate the impact of multiband corrections on the current density in GaAs tunnel junctions (TJs) calculated with a refined yet simple semi-classical interband tunneling model (SCITM). The non-parabolicity of the considered bands and the spin-orbit effects are considered by using a recently revisited SCITM available in the literature. The model is confronted to experimental results from a series of molecular beam epitaxy grown GaAs TJs and to numerical results obtained with a full quantum model based on the non-equilibrium Green’s function formalism and a 6-band k.p Hamiltonian. We emphasize the importance of considering the non-parabolicity of the conduction band by two different measurements of the energy-dependent electron effective mass in N-doped GaAs. We also propose an innovative method to compute the non-uniform electric field in the TJ for the SCITM simulations, which is of prime importance for a successful operation of the model. We demonstrate that, when considering the multiband corrections and this new computation of the non-uniform electric field, the SCITM succeeds in predicting the electrical characteristics of GaAs TJs, and are also in agreement with the quantum model. Besides the fundamental study of the tunneling phenomenon in TJs, the main benefit of this SCITM is that it can be easily embedded into drift-diffusion software, which are the most widely-used simulation tools for electronic and opto-electronic devices such as multi-junction solar cells, tunnel field-effect transistors, or vertical-cavity surface-emitting lasers.

A globally optimal k-anonymity method for the de-identification of health data.

PubMed

El Emam, Khaled; Dankar, Fida Kamal; Issa, Romeo; Jonker, Elizabeth; Amyot, Daniel; Cogo, Elise; Corriveau, Jean-Pierre; Walker, Mark; Chowdhury, Sadrul; Vaillancourt, Regis; Roffey, Tyson; Bottomley, Jim

2009-01-01

Explicit patient consent requirements in privacy laws can have a negative impact on health research, leading to selection bias and reduced recruitment. Often legislative requirements to obtain consent are waived if the information collected or disclosed is de-identified. The authors developed and empirically evaluated a new globally optimal de-identification algorithm that satisfies the k-anonymity criterion and that is suitable for health datasets. Authors compared OLA (Optimal Lattice Anonymization) empirically to three existing k-anonymity algorithms, Datafly, Samarati, and Incognito, on six public, hospital, and registry datasets for different values of k and suppression limits. Measurement Three information loss metrics were used for the comparison: precision, discernability metric, and non-uniform entropy. Each algorithm's performance speed was also evaluated. The Datafly and Samarati algorithms had higher information loss than OLA and Incognito; OLA was consistently faster than Incognito in finding the globally optimal de-identification solution. For the de-identification of health datasets, OLA is an improvement on existing k-anonymity algorithms in terms of information loss and performance.

A novel retinal vessel extraction algorithm based on matched filtering and gradient vector flow

NASA Astrophysics Data System (ADS)

Yu, Lei; Xia, Mingliang; Xuan, Li

2013-10-01

The microvasculature network of retina plays an important role in the study and diagnosis of retinal diseases (age-related macular degeneration and diabetic retinopathy for example). Although it is possible to noninvasively acquire high-resolution retinal images with modern retinal imaging technologies, non-uniform illumination, the low contrast of thin vessels and the background noises all make it difficult for diagnosis. In this paper, we introduce a novel retinal vessel extraction algorithm based on gradient vector flow and matched filtering to segment retinal vessels with different likelihood. Firstly, we use isotropic Gaussian kernel and adaptive histogram equalization to smooth and enhance the retinal images respectively. Secondly, a multi-scale matched filtering method is adopted to extract the retinal vessels. Then, the gradient vector flow algorithm is introduced to locate the edge of the retinal vessels. Finally, we combine the results of matched filtering method and gradient vector flow algorithm to extract the vessels at different likelihood levels. The experiments demonstrate that our algorithm is efficient and the intensities of vessel images exactly represent the likelihood of the vessels.

An investigation of messy genetic algorithms

NASA Technical Reports Server (NTRS)

Goldberg, David E.; Deb, Kalyanmoy; Korb, Bradley

1990-01-01

Genetic algorithms (GAs) are search procedures based on the mechanics of natural selection and natural genetics. They combine the use of string codings or artificial chromosomes and populations with the selective and juxtapositional power of reproduction and recombination to motivate a surprisingly powerful search heuristic in many problems. Despite their empirical success, there has been a long standing objection to the use of GAs in arbitrarily difficult problems. A new approach was launched. Results to a 30-bit, order-three-deception problem were obtained using a new type of genetic algorithm called a messy genetic algorithm (mGAs). Messy genetic algorithms combine the use of variable-length strings, a two-phase selection scheme, and messy genetic operators to effect a solution to the fixed-coding problem of standard simple GAs. The results of the study of mGAs in problems with nonuniform subfunction scale and size are presented. The mGA approach is summarized, both its operation and the theory of its use. Experiments on problems of varying scale, varying building-block size, and combined varying scale and size are presented.

Correction of nonuniformity error of Gafchromic EBT2 and EBT3.

PubMed

Katsuda, Toshizo; Gotanda, Rumi; Gotanda, Tatsuhiro; Akagawa, Takuya; Tanki, Nobuyoshi; Kuwano, Tadao; Yabunaka, Kouichi

2016-05-08

This study investigates an X-ray dose measurement method for computed tomography using Gafchromic films. Nonuniformity of the active layer is a major problem in Gafchromic films. In radiotherapy, nonuniformity error is reduced by applying the double-exposure technique, but this is impractical in diagnostic radiology because of the heel effect. Therefore, we propose replacing the X-rays in the double-exposure technique with ultraviolet (UV)-A irradiation of Gafchromic EBT2 and EBT3. To improve the reproducibility of the scan position, Gafchromic EBT2 and EBT3 films were attached to a 3-mm-thick acrylic plate. The samples were then irradiated with a 10 W UV-A fluorescent lamp placed at a distance of 72cm for 30, 60, and 90 minutes. The profile curves were evaluated along the long and short axes of the film center, and the standard deviations of the pixel values were calculated over large areas of the films. Paired t-test was performed. UV-A irradiation exerted a significant effect on Gafchromic EBT2 (paired t-test; p = 0.0275) but not on EBT3 (paired t-test; p = 0.2785). Similarly, the homogeneity was improved in Gafchromic EBT2 but not in EBT3. Therefore, the double-exposure technique under UV-A irradiation is suitable only for EBT2 films.

A fully automatic, threshold-based segmentation method for the estimation of the Metabolic Tumor Volume from PET images: validation on 3D printed anthropomorphic oncological lesions

NASA Astrophysics Data System (ADS)

Gallivanone, F.; Interlenghi, M.; Canervari, C.; Castiglioni, I.

2016-01-01

18F-Fluorodeoxyglucose (18F-FDG) Positron Emission Tomography (PET) is a standard functional diagnostic technique to in vivo image cancer. Different quantitative paramters can be extracted from PET images and used as in vivo cancer biomarkers. Between PET biomarkers Metabolic Tumor Volume (MTV) has gained an important role in particular considering the development of patient-personalized radiotherapy treatment for non-homogeneous dose delivery. Different imaging processing methods have been developed to define MTV. The different proposed PET segmentation strategies were validated in ideal condition (e.g. in spherical objects with uniform radioactivity concentration), while the majority of cancer lesions doesn't fulfill these requirements. In this context, this work has a twofold objective: 1) to implement and optimize a fully automatic, threshold-based segmentation method for the estimation of MTV, feasible in clinical practice 2) to develop a strategy to obtain anthropomorphic phantoms, including non-spherical and non-uniform objects, miming realistic oncological patient conditions. The developed PET segmentation algorithm combines an automatic threshold-based algorithm for the definition of MTV and a k-means clustering algorithm for the estimation of the background. The method is based on parameters always available in clinical studies and was calibrated using NEMA IQ Phantom. Validation of the method was performed both in ideal (e.g. in spherical objects with uniform radioactivity concentration) and non-ideal (e.g. in non-spherical objects with a non-uniform radioactivity concentration) conditions. The strategy to obtain a phantom with synthetic realistic lesions (e.g. with irregular shape and a non-homogeneous uptake) consisted into the combined use of standard anthropomorphic phantoms commercially and irregular molds generated using 3D printer technology and filled with a radioactive chromatic alginate. The proposed segmentation algorithm was feasible in a clinical context and showed a good accuracy both in ideal and in realistic conditions.

Data inversion algorithm development for the hologen occultation experiment

NASA Technical Reports Server (NTRS)

Gordley, Larry L.; Mlynczak, Martin G.

1986-01-01

The successful retrieval of atmospheric parameters from radiometric measurement requires not only the ability to do ideal radiometric calculations, but also a detailed understanding of instrument characteristics. Therefore a considerable amount of time was spent in instrument characterization in the form of test data analysis and mathematical formulation. Analyses of solar-to-reference interference (electrical cross-talk), detector nonuniformity, instrument balance error, electronic filter time-constants and noise character were conducted. A second area of effort was the development of techniques for the ideal radiometric calculations required for the Halogen Occultation Experiment (HALOE) data reduction. The computer code for these calculations must be extremely complex and fast. A scheme for meeting these requirements was defined and the algorithms needed form implementation are currently under development. A third area of work included consulting on the implementation of the Emissivity Growth Approximation (EGA) method of absorption calculation into a HALOE broadband radiometer channel retrieval algorithm.

Compressed-sensing wavenumber-scanning interferometry

NASA Astrophysics Data System (ADS)

Bai, Yulei; Zhou, Yanzhou; He, Zhaoshui; Ye, Shuangli; Dong, Bo; Xie, Shengli

2018-01-01

The Fourier transform (FT), the nonlinear least-squares algorithm (NLSA), and eigenvalue decomposition algorithm (EDA) are used to evaluate the phase field in depth-resolved wavenumber-scanning interferometry (DRWSI). However, because the wavenumber series of the laser's output is usually accompanied by nonlinearity and mode-hop, FT, NLSA, and EDA, which are only suitable for equidistant interference data, often lead to non-negligible phase errors. In this work, a compressed-sensing method for DRWSI (CS-DRWSI) is proposed to resolve this problem. By using the randomly spaced inverse Fourier matrix and solving the underdetermined equation in the wavenumber domain, CS-DRWSI determines the nonuniform sampling and spectral leakage of the interference spectrum. Furthermore, it can evaluate interference data without prior knowledge of the object. The experimental results show that CS-DRWSI improves the depth resolution and suppresses sidelobes. It can replace the FT as a standard algorithm for DRWSI.

Development of the atmospheric correction algorithm for the next generation geostationary ocean color sensor data

NASA Astrophysics Data System (ADS)

Lee, Kwon-Ho; Kim, Wonkook

2017-04-01

The geostationary ocean color imager-II (GOCI-II), designed to be focused on the ocean environmental monitoring with better spatial (250m for local and 1km for full disk) and spectral resolution (13 bands) then the current operational mission of the GOCI-I. GOCI-II will be launched in 2018. This study presents currently developing algorithm for atmospheric correction and retrieval of surface reflectance over land to be optimized with the sensor's characteristics. We first derived the top-of-atmosphere radiances as the proxy data derived from the parameterized radiative transfer code in the 13 bands of GOCI-II. Based on the proxy data, the algorithm has been made with cloud masking, gas absorption correction, aerosol inversion, computation of aerosol extinction correction. The retrieved surface reflectances are evaluated by the MODIS level 2 surface reflectance products (MOD09). For the initial test period, the algorithm gave error of within 0.05 compared to MOD09. Further work will be progressed to fully implement the GOCI-II Ground Segment system (G2GS) algorithm development environment. These atmospherically corrected surface reflectance product will be the standard GOCI-II product after launch.

Global Flow Instability and Control IV Held in Crete, Greece on September 28-October 2, 2009: A Synthesis of Presentations and Discussions

DTIC Science & Technology

2009-09-01

non-uniform, stationary rotation / non- Distribution A: Approved for public release; distribution is unlimited. 8 stationary rotation , mass...Cayley spectral transformation as a means of rotating the basin of convergence of the Arnoldi algorithm. Instead of doing the inversion of the large...pair of counter rotating streamwise vortices embedded in uniform shear flow. Consistently with earlier work by the same group, the main present finding

Memory-efficient decoding of LDPC codes

NASA Technical Reports Server (NTRS)

Kwok-San Lee, Jason; Thorpe, Jeremy; Hawkins, Jon

2005-01-01

We present a low-complexity quantization scheme for the implementation of regular (3,6) LDPC codes. The quantization parameters are optimized to maximize the mutual information between the source and the quantized messages. Using this non-uniform quantized belief propagation algorithm, we have simulated that an optimized 3-bit quantizer operates with 0.2dB implementation loss relative to a floating point decoder, and an optimized 4-bit quantizer operates less than 0.1dB quantization loss.

Compressed sensing reconstruction of cardiac cine MRI using golden angle spiral trajectories

NASA Astrophysics Data System (ADS)

Tolouee, Azar; Alirezaie, Javad; Babyn, Paul

2015-11-01

In dynamic cardiac cine Magnetic Resonance Imaging (MRI), the spatiotemporal resolution is limited by the low imaging speed. Compressed sensing (CS) theory has been applied to improve the imaging speed and thus the spatiotemporal resolution. The purpose of this paper is to improve CS reconstruction of under sampled data by exploiting spatiotemporal sparsity and efficient spiral trajectories. We extend k-t sparse algorithm to spiral trajectories to achieve high spatio temporal resolutions in cardiac cine imaging. We have exploited spatiotemporal sparsity of cardiac cine MRI by applying a 2D + time wavelet-Fourier transform. For efficient coverage of k-space, we have used a modified version of multi shot (interleaved) spirals trajectories. In order to reduce incoherent aliasing artifact, we use different random undersampling pattern for each temporal frame. Finally, we have used nonuniform fast Fourier transform (NUFFT) algorithm to reconstruct the image from the non-uniformly acquired samples. The proposed approach was tested in simulated and cardiac cine MRI data. Results show that higher acceleration factors with improved image quality can be obtained with the proposed approach in comparison to the existing state-of-the-art method. The flexibility of the introduced method should allow it to be used not only for the challenging case of cardiac imaging, but also for other patient motion where the patient moves or breathes during acquisition.

Lens correction algorithm based on the see-saw diagram to correct Seidel aberrations employing aspheric surfaces

NASA Astrophysics Data System (ADS)

Rosete-Aguilar, Martha

2000-06-01

In this paper a lens correction algorithm based on the see- saw diagram developed by Burch is described. The see-saw diagram describes the image correction in rotationally symmetric systems over a finite field of view by means of aspherics surfaces. The algorithm is applied to the design of some basic telescopic configurations such as the classical Cassegrain telescope, the Dall-Kirkham telescope, the Pressman-Camichel telescope and the Ritchey-Chretien telescope in order to show a physically visualizable concept of image correction for optical systems that employ aspheric surfaces. By using the see-saw method the student can visualize the different possible configurations of such telescopes as well as their performances and also the student will be able to understand that it is not always possible to correct more primary aberrations by aspherizing more surfaces.

Surface sampling techniques for 3D object inspection

NASA Astrophysics Data System (ADS)

Shih, Chihhsiong S.; Gerhardt, Lester A.

1995-03-01

While the uniform sampling method is quite popular for pointwise measurement of manufactured parts, this paper proposes three novel sampling strategies which emphasize 3D non-uniform inspection capability. They are: (a) the adaptive sampling, (b) the local adjustment sampling, and (c) the finite element centroid sampling techniques. The adaptive sampling strategy is based on a recursive surface subdivision process. Two different approaches are described for this adaptive sampling strategy. One uses triangle patches while the other uses rectangle patches. Several real world objects were tested using these two algorithms. Preliminary results show that sample points are distributed more closely around edges, corners, and vertices as desired for many classes of objects. Adaptive sampling using triangle patches is shown to generally perform better than both uniform and adaptive sampling using rectangle patches. The local adjustment sampling strategy uses a set of predefined starting points and then finds the local optimum position of each nodal point. This method approximates the object by moving the points toward object edges and corners. In a hybrid approach, uniform points sets and non-uniform points sets, first preprocessed by the adaptive sampling algorithm on a real world object were then tested using the local adjustment sampling method. The results show that the initial point sets when preprocessed by adaptive sampling using triangle patches, are moved the least amount of distance by the subsequently applied local adjustment method, again showing the superiority of this method. The finite element sampling technique samples the centroids of the surface triangle meshes produced from the finite element method. The performance of this algorithm was compared to that of the adaptive sampling using triangular patches. The adaptive sampling with triangular patches was once again shown to be better on different classes of objects.

[Design and Implementation of Image Interpolation and Color Correction for Ultra-thin Electronic Endoscope on FPGA].

PubMed

Luo, Qiang; Yan, Zhuangzhi; Gu, Dongxing; Cao, Lei

This paper proposed an image interpolation algorithm based on bilinear interpolation and a color correction algorithm based on polynomial regression on FPGA, which focused on the limited number of imaging pixels and color distortion of the ultra-thin electronic endoscope. Simulation experiment results showed that the proposed algorithm realized the real-time display of 1280 x 720@60Hz HD video, and using the X-rite color checker as standard colors, the average color difference was reduced about 30% comparing with that before color correction.

Energy shadowing correction of ultrasonic pulse-echo records by digital signal processing

NASA Technical Reports Server (NTRS)

Kishoni, D.; Heyman, J. S.

1986-01-01

Attention is given to a numerical algorithm that, via signal processing, enables the dynamic correction of the shadowing effect of reflections on ultrasonic displays. The algorithm was applied to experimental data from graphite-epoxy composite material immersed in a water bath. It is concluded that images of material defects with the shadowing corrections allow for a more quantitative interpretation of the material state. It is noted that the proposed algorithm is fast and simple enough to be adopted for real time applications in industry.

Albion: the UK 3rd generation high-performance thermal imaging programme

NASA Astrophysics Data System (ADS)

McEwen, R. K.; Lupton, M.; Lawrence, M.; Knowles, P.; Wilson, M.; Dennis, P. N. J.; Gordon, N. T.; Lees, D. J.; Parsons, J. F.

2007-04-01

The first generation of high performance thermal imaging sensors in the UK was based on two axis opto-mechanical scanning systems and small (4-16 element) arrays of the SPRITE detector, developed during the 1970s. Almost two decades later, a 2nd Generation system, STAIRS C was introduced, based on single axis scanning and a long linear array of approximately 3000 elements. The UK has now begun the industrialisation of 3 rd Generation High Performance Thermal Imaging under a programme known as "Albion". Three new high performance cadmium mercury telluride arrays are being manufactured. The CMT material is grown by MOVPE on low cost substrates and bump bonded to the silicon read out circuit (ROIC). To maintain low production costs, all three detectors are designed to fit with existing standard Integrated Detector Cooling Assemblies (IDCAs). The two largest focal planes are conventional devices operating in the MWIR and LWIR spectral bands. A smaller format LWIR device is also described which has a smart ROIC, enabling much longer stare times than are feasible with conventional pixel circuits, thus achieving very high sensitivity. A new reference surface technology for thermal imaging sensors is described, based on Negative Luminescence (NL), which offers several advantages over conventional peltier references, improving the quality of the Non-Uniformity Correction (NUC) algorithms.

WE-DE-207B-12: Scatter Correction for Dedicated Cone Beam Breast CT Based On a Forward Projection Model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shi, L; Zhu, L; Vedantham, S

2016-06-15

Purpose: The image quality of dedicated cone-beam breast CT (CBBCT) is fundamentally limited by substantial x-ray scatter contamination, resulting in cupping artifacts and contrast-loss in reconstructed images. Such effects obscure the visibility of soft-tissue lesions and calcifications, which hinders breast cancer detection and diagnosis. In this work, we propose to suppress x-ray scatter in CBBCT images using a deterministic forward projection model. Method: We first use the 1st-pass FDK-reconstructed CBBCT images to segment fibroglandular and adipose tissue. Attenuation coefficients are assigned to the two tissues based on the x-ray spectrum used for imaging acquisition, and is forward projected to simulatemore » scatter-free primary projections. We estimate the scatter by subtracting the simulated primary projection from the measured projection, and then the resultant scatter map is further refined by a Fourier-domain fitting algorithm after discarding untrusted scatter information. The final scatter estimate is subtracted from the measured projection for effective scatter correction. In our implementation, the proposed scatter correction takes 0.5 seconds for each projection. The method was evaluated using the overall image spatial non-uniformity (SNU) metric and the contrast-to-noise ratio (CNR) with 5 clinical datasets of BI-RADS 4/5 subjects. Results: For the 5 clinical datasets, our method reduced the SNU from 7.79% to 1.68% in coronal view and from 6.71% to 3.20% in sagittal view. The average CNR is improved by a factor of 1.38 in coronal view and 1.26 in sagittal view. Conclusion: The proposed scatter correction approach requires no additional scans or prior images and uses a deterministic model for efficient calculation. Evaluation with clinical datasets demonstrates the feasibility and stability of the method. These features are attractive for clinical CBBCT and make our method distinct from other approaches. Supported partly by NIH R21EB019597, R21CA134128 and R01CA195512.The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.« less

An Enhanced MWR-Based Wet Tropospheric Correction for Sentinel-3: Inheritance from Past ESA Altimetry Missions

NASA Astrophysics Data System (ADS)

Lazaro, Clara; Fernandes, Joanna M.

2015-12-01

The GNSS-derived Path Delay (GPD) and the Data Combination (DComb) algorithms were developed by University of Porto (U.Porto), in the scope of different projects funded by ESA, to compute a continuous and improved wet tropospheric correction (WTC) for use in satellite altimetry. Both algorithms are mission independent and are based on a linear space-time objective analysis procedure that combines various wet path delay data sources. A new algorithm that gets the best of each aforementioned algorithm (GNSS-derived Path Delay Plus, GPD+) has been developed at U.Porto in the scope of SL_cci project, where the use of consistent and stable in time datasets is of major importance. The algorithm has been applied to the main eight altimetric missions (TOPEX/Poseidon, Jason-1, Jason-2, ERS-1, ERS-2, Envisat and CryoSat-2 and SARAL). Upcoming Sentinel-3 possesses a two-channel on-board radiometer similar to those that were deployed in ERS-1/2 and Envisat. Consequently, the fine-tuning of the GPD+ algorithm to these missions datasets shall enrich it, by increasing its capability to quickly deal with Sentinel-3 data. Foreseeing that the computation of an improved MWR-based WTC for use with Sentinel-3 data will be required, this study focuses on the results obtained for ERS-1/2 and Envisat missions, which are expected to give insight into the computation of this correction for the upcoming ESA altimetric mission. The various WTC corrections available for each mission (in general, the original correction derived from the on-board MWR, the model correction and the one derived from GPD+) are inter-compared either directly or using various sea level anomaly variance statistical analyses. Results show that the GPD+ algorithm is efficient in generating global and continuous datasets, corrected for land and ice contamination and spurious measurements of instrumental origin, with significant impacts on all ESA missions.

Geometric and shading correction for images of printed materials using boundary.

PubMed

Brown, Michael S; Tsoi, Yau-Chat

2006-06-01

A novel technique that uses boundary interpolation to correct geometric distortion and shading artifacts present in images of printed materials is presented. Unlike existing techniques, our algorithm can simultaneously correct a variety of geometric distortions, including skew, fold distortion, binder curl, and combinations of these. In addition, the same interpolation framework can be used to estimate the intrinsic illumination component of the distorted image to correct shading artifacts. We detail our algorithm for geometric and shading correction and demonstrate its usefulness on real-world and synthetic data.

Rain measurements from space using a modified Seasat-type radar altimeter

NASA Technical Reports Server (NTRS)

Goldhirsh, J.; Walsh, E. J.

1982-01-01

The incorporation in the 13.5 GHz Seasat-type radar altimeter of a mode to measure rain rate is investigated. Specifically, an algorithm is developed relating the echo power at the various range bins, to the rain rate taking into consideration Mie scattering and path attenuation. The dependence of the algorithm on rain drop size distribution and nonuniform rain structure are examined and associated uncertainties defined. A technique for obtaining drop size distribution through the measurements of power at the top of the raincell and power difference through the cell also is investigated together with an associated error analysis. A description of the minor hardware modifications to the basic Seasat design is given for implementing the rain measurements.

Dosimetry for nonuniform activity distributions: a method for the calculation of 3D absorbed-dose distribution without the use of voxel S-values, point kernels, or Monte Carlo simulations.

PubMed

Traino, A C; Marcatili, S; Avigo, C; Sollini, M; Erba, P A; Mariani, G

2013-04-01

Nonuniform activity within the target lesions and the critical organs constitutes an important limitation for dosimetric estimates in patients treated with tumor-seeking radiopharmaceuticals. The tumor control probability and the normal tissue complication probability are affected by the distribution of the radionuclide in the treated organ/tissue. In this paper, a straightforward method for calculating the absorbed dose at the voxel level is described. This new method takes into account a nonuniform activity distribution in the target/organ. The new method is based on the macroscopic S-values (i.e., the S-values calculated for the various organs, as defined in the MIRD approach), on the definition of the number of voxels, and on the raw-count 3D array, corrected for attenuation, scatter, and collimator resolution, in the lesion/organ considered. Starting from these parameters, the only mathematical operation required is to multiply the 3D array by a scalar value, thus avoiding all the complex operations involving the 3D arrays. A comparison with the MIRD approach, fully described in the MIRD Pamphlet No. 17, using S-values at the voxel level, showed a good agreement between the two methods for (131)I and for (90)Y. Voxel dosimetry is becoming more and more important when performing therapy with tumor-seeking radiopharmaceuticals. The method presented here does not require calculating the S-values at the voxel level, and thus bypasses the mathematical problems linked to the convolution of 3D arrays and to the voxel size. In the paper, the results obtained with this new simplified method as well as the possibility of using it for other radionuclides commonly employed in therapy are discussed. The possibility of using the correct density value of the tissue/organs involved is also discussed.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kakinohana, Y; Toita, T; Kasuya, G

Purpose: To compare the dosimetric properties of radiochromic films with different orientation. Methods: A sheet of EBT3 film was cut into eight pieces with the following sizes: 15×15 cm2 (one piece), 5x15 cm{sup 2} (two) and 4×5 cm{sup 2} (five). A set of two EBT3 sheets was used at each dose level. Two sets were used changing the delivered doses (1 and 2 Gy). The 5×15 cm{sup 2} pieces were rotated by 90 degrees in relation to each other, such that one had landscape orientation and the other had portrait orientation. All 5×15 cm2 pieces were irradiated with their longmore » side aligned with the x-axis of the radiation field. The 15×15 cm{sup 2} pieces were irradiated rotated at 90 degrees to each other. Five pieces, (a total of ten from two sheets) were used to obtain a calibration curve. The irradiated films were scanned using an Epson ES-2200 scanner and were analyzed using ImageJ software. In this study, no correction was applied for the nonuniform scanner signal that is evident in the direction of the scanner lamp. Each film piece was scanned both in portrait and landscape orientations. Dosimetric comparisons of the beam profiles were made in terms of the film orientations (portrait and landscape) and scanner bed directions (perpendicular and parallel to the scanner movement). Results: In general, portrait orientation exhibited higher noise than landscape and was adversely affected to a great extent by the nonuniformity in the direction of the scanner lamp. A significant difference in the measured field widths between the perpendicular and parallel directions was found for both orientations. Conclusion: Without correction for the nonuniform scanner signal in the direction of the scanner lamp, a landscape orientation is preferable. A more detailed investigation is planned to evaluate quantitatively the effect of orientation on the dosimetric properties of a film.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chen, Xi; Mou, Xuanqin; Nishikawa, Robert M.

Purpose: Small calcifications are often the earliest and the main indicator of breast cancer. Dual-energy digital mammography (DEDM) has been considered as a promising technique to improve the detectability of calcifications since it can be used to suppress the contrast between adipose and glandular tissues of the breast. X-ray scatter leads to erroneous calculations of the DEDM image. Although the pinhole-array interpolation method can estimate scattered radiations, it requires extra exposures to measure the scatter and apply the correction. The purpose of this work is to design an algorithmic method for scatter correction in DEDM without extra exposures.Methods: In thismore » paper, a scatter correction method for DEDM was developed based on the knowledge that scattered radiation has small spatial variation and that the majority of pixels in a mammogram are noncalcification pixels. The scatter fraction was estimated in the DEDM calculation and the measured scatter fraction was used to remove scatter from the image. The scatter correction method was implemented on a commercial full-field digital mammography system with breast tissue equivalent phantom and calcification phantom. The authors also implemented the pinhole-array interpolation scatter correction method on the system. Phantom results for both methods are presented and discussed. The authors compared the background DE calcification signals and the contrast-to-noise ratio (CNR) of calcifications in the three DE calcification images: image without scatter correction, image with scatter correction using pinhole-array interpolation method, and image with scatter correction using the authors' algorithmic method.Results: The authors' results show that the resultant background DE calcification signal can be reduced. The root-mean-square of background DE calcification signal of 1962 μm with scatter-uncorrected data was reduced to 194 μm after scatter correction using the authors' algorithmic method. The range of background DE calcification signals using scatter-uncorrected data was reduced by 58% with scatter-corrected data by algorithmic method. With the scatter-correction algorithm and denoising, the minimum visible calcification size can be reduced from 380 to 280 μm.Conclusions: When applying the proposed algorithmic scatter correction to images, the resultant background DE calcification signals can be reduced and the CNR of calcifications can be improved. This method has similar or even better performance than pinhole-array interpolation method in scatter correction for DEDM; moreover, this method is convenient and requires no extra exposure to the patient. Although the proposed scatter correction method is effective, it is validated by a 5-cm-thick phantom with calcifications and homogeneous background. The method should be tested on structured backgrounds to more accurately gauge effectiveness.« less

Fast and fully automatic phalanx segmentation using a grayscale-histogram morphology algorithm

NASA Astrophysics Data System (ADS)

Hsieh, Chi-Wen; Liu, Tzu-Chiang; Jong, Tai-Lang; Chen, Chih-Yen; Tiu, Chui-Mei; Chan, Din-Yuen

2011-08-01

Bone age assessment is a common radiological examination used in pediatrics to diagnose the discrepancy between the skeletal and chronological age of a child; therefore, it is beneficial to develop a computer-based bone age assessment to help junior pediatricians estimate bone age easily. Unfortunately, the phalanx on radiograms is not easily separated from the background and soft tissue. Therefore, we proposed a new method, called the grayscale-histogram morphology algorithm, to segment the phalanges fast and precisely. The algorithm includes three parts: a tri-stage sieve algorithm used to eliminate the background of hand radiograms, a centroid-edge dual scanning algorithm to frame the phalanx region, and finally a segmentation algorithm based on disk traverse-subtraction filter to segment the phalanx. Moreover, two more segmentation methods: adaptive two-mean and adaptive two-mean clustering were performed, and their results were compared with the segmentation algorithm based on disk traverse-subtraction filter using five indices comprising misclassification error, relative foreground area error, modified Hausdorff distances, edge mismatch, and region nonuniformity. In addition, the CPU time of the three segmentation methods was discussed. The result showed that our method had a better performance than the other two methods. Furthermore, satisfactory segmentation results were obtained with a low standard error.

Highly-accelerated quantitative 2D and 3D localized spectroscopy with linear algebraic modeling (SLAM) and sensitivity encoding

NASA Astrophysics Data System (ADS)

Zhang, Yi; Gabr, Refaat E.; Zhou, Jinyuan; Weiss, Robert G.; Bottomley, Paul A.

2013-12-01

Noninvasive magnetic resonance spectroscopy (MRS) with chemical shift imaging (CSI) provides valuable metabolic information for research and clinical studies, but is often limited by long scan times. Recently, spectroscopy with linear algebraic modeling (SLAM) was shown to provide compartment-averaged spectra resolved in one spatial dimension with many-fold reductions in scan-time. This was achieved using a small subset of the CSI phase-encoding steps from central image k-space that maximized the signal-to-noise ratio. Here, SLAM is extended to two- and three-dimensions (2D, 3D). In addition, SLAM is combined with sensitivity-encoded (SENSE) parallel imaging techniques, enabling the replacement of even more CSI phase-encoding steps to further accelerate scan-speed. A modified SLAM reconstruction algorithm is introduced that significantly reduces the effects of signal nonuniformity within compartments. Finally, main-field inhomogeneity corrections are provided, analogous to CSI. These methods are all tested on brain proton MRS data from a total of 24 patients with brain tumors, and in a human cardiac phosphorus 3D SLAM study at 3T. Acceleration factors of up to 120-fold versus CSI are demonstrated, including speed-up factors of 5-fold relative to already-accelerated SENSE CSI. Brain metabolites are quantified in SLAM and SENSE SLAM spectra and found to be indistinguishable from CSI measures from the same compartments. The modified reconstruction algorithm demonstrated immunity to maladjusted segmentation and errors from signal heterogeneity in brain data. In conclusion, SLAM demonstrates the potential to supplant CSI in studies requiring compartment-average spectra or large volume coverage, by dramatically reducing scan-time while providing essentially the same quantitative results.

Development Of A Three-Dimensional Circuit Integration Technology And Computer Architecture

NASA Astrophysics Data System (ADS)

Etchells, R. D.; Grinberg, J.; Nudd, G. R.

1981-12-01

This paper is the first of a series 1,2,3 describing a range of efforts at Hughes Research Laboratories, which are collectively referred to as "Three-Dimensional Microelectronics." The technology being developed is a combination of a unique circuit fabrication/packaging technology and a novel processing architecture. The packaging technology greatly reduces the parasitic impedances associated with signal-routing in complex VLSI structures, while simultaneously allowing circuit densities orders of magnitude higher than the current state-of-the-art. When combined with the 3-D processor architecture, the resulting machine exhibits a one- to two-order of magnitude simultaneous improvement over current state-of-the-art machines in the three areas of processing speed, power consumption, and physical volume. The 3-D architecture is essentially that commonly referred to as a "cellular array", with the ultimate implementation having as many as 512 x 512 processors working in parallel. The three-dimensional nature of the assembled machine arises from the fact that the chips containing the active circuitry of the processor are stacked on top of each other. In this structure, electrical signals are passed vertically through the chips via thermomigrated aluminum feedthroughs. Signals are passed between adjacent chips by micro-interconnects. This discussion presents a broad view of the total effort, as well as a more detailed treatment of the fabrication and packaging technologies themselves. The results of performance simulations of the completed 3-D processor executing a variety of algorithms are also presented. Of particular pertinence to the interests of the focal-plane array community is the simulation of the UNICORNS nonuniformity correction algorithms as executed by the 3-D architecture.

Modelling river bank erosion processes and mass failure mechanisms using 2-D depth averaged numerical model

NASA Astrophysics Data System (ADS)

Die Moran, Andres; El kadi Abderrezzak, Kamal; Tassi, Pablo; Herouvet, Jean-Michel

2014-05-01

Bank erosion is a key process that may cause a large number of economic and environmental problems (e.g. land loss, damage to structures and aquatic habitat). Stream bank erosion (toe erosion and mass failure) represents an important form of channel morphology changes and a significant source of sediment. With the advances made in computational techniques, two-dimensional (2-D) numerical models have become valuable tools for investigating flow and sediment transport in open channels at large temporal and spatial scales. However, the implementation of mass failure process in 2D numerical models is still a challenging task. In this paper, a simple, innovative algorithm is implemented in the Telemac-Mascaret modeling platform to handle bank failure: failure occurs whether the actual slope of one given bed element is higher than the internal friction angle. The unstable bed elements are rotated around an appropriate axis, ensuring mass conservation. Mass failure of a bank due to slope instability is applied at the end of each sediment transport evolution iteration, once the bed evolution due to bed load (and/or suspended load) has been computed, but before the global sediment mass balance is verified. This bank failure algorithm is successfully tested using two laboratory experimental cases. Then, bank failure in a 1:40 scale physical model of the Rhine River composed of non-uniform material is simulated. The main features of the bank erosion and failure are correctly reproduced in the numerical simulations, namely the mass wasting at the bank toe, followed by failure at the bank head, and subsequent transport of the mobilised material in an aggradation front. Volumes of eroded material obtained are of the same order of magnitude as the volumes measured during the laboratory tests.

Automatic three-dimensional registration of intravascular optical coherence tomography images

NASA Astrophysics Data System (ADS)

Ughi, Giovanni J.; Adriaenssens, Tom; Larsson, Matilda; Dubois, Christophe; Sinnaeve, Peter R.; Coosemans, Mark; Desmet, Walter; D'hooge, Jan

2012-02-01

Intravascular optical coherence tomography (IV-OCT) is a catheter-based high-resolution imaging technique able to visualize the inner wall of the coronary arteries and implanted devices in vivo with an axial resolution below 20 μm. IV-OCT is being used in several clinical trials aiming to quantify the vessel response to stent implantation over time. However, stent analysis is currently performed manually and corresponding images taken at different time points are matched through a very labor-intensive and subjective procedure. We present an automated method for the spatial registration of IV-OCT datasets. Stent struts are segmented through consecutive images and three-dimensional models of the stents are created for both datasets to be registered. The two models are initially roughly registered through an automatic initialization procedure and an iterative closest point algorithm is subsequently applied for a more precise registration. To correct for nonuniform rotational distortions (NURDs) and other potential acquisition artifacts, the registration is consecutively refined on a local level. The algorithm was first validated by using an in vitro experimental setup based on a polyvinyl-alcohol gel tubular phantom. Subsequently, an in vivo validation was obtained by exploiting stable vessel landmarks. The mean registration error in vitro was quantified to be 0.14 mm in the longitudinal axis and 7.3-deg mean rotation error. In vivo validation resulted in 0.23 mm in the longitudinal axis and 10.1-deg rotation error. These results indicate that the proposed methodology can be used for automatic registration of in vivo IV-OCT datasets. Such a tool will be indispensable for larger studies on vessel healing pathophysiology and reaction to stent implantation. As such, it will be valuable in testing the performance of new generations of intracoronary devices and new therapeutic drugs.

Implementation of real-time nonuniformity correction with multiple NUC tables using FPGA in an uncooled imaging system

NASA Astrophysics Data System (ADS)

Oh, Gyong Jin; Kim, Lyang-June; Sheen, Sue-Ho; Koo, Gyou-Phyo; Jin, Sang-Hun; Yeo, Bo-Yeon; Lee, Jong-Ho

2009-05-01

This paper presents a real time implementation of Non Uniformity Correction (NUC). Two point correction and one point correction with shutter were carried out in an uncooled imaging system which will be applied to a missile application. To design a small, light weight and high speed imaging system for a missile system, SoPC (System On a Programmable Chip) which comprises of FPGA and soft core (Micro-blaze) was used. Real time NUC and generation of control signals are implemented using FPGA. Also, three different NUC tables were made to make the operating time shorter and to reduce the power consumption in a large range of environment temperature. The imaging system consists of optics and four electronics boards which are detector interface board, Analog to Digital converter board, Detector signal generation board and Power supply board. To evaluate the imaging system, NETD was measured. The NETD was less than 160mK in three different environment temperatures.

Large mirror surface control by corrective coating

NASA Astrophysics Data System (ADS)

Bonnand, Romain; Degallaix, Jerome; Flaminio, Raffaele; Giacobone, Laurent; Lagrange, Bernard; Marion, Fréderique; Michel, Christophe; Mours, Benoit; Mugnier, Pierre; Pacaud, Emmanuel; Pinard, Laurent

2013-08-01

The Advanced Virgo gravitational wave detector aims at a sensitivity ten times better than the initial LIGO and Virgo detectors. This implies very stringent requirement on the optical losses in the interferometer arm cavities. In this paper we focus on the mirrors which form the interferometer arm cavities and that require a surface figure error to be well below one nanometre on a diameter of 150 mm. This ‘sub-nanometric flatness’ is not achievable by classical polishing on such a large diameter. Therefore we present the corrective coating technique which has been developed to reach this requirement. Its principle is to add a non-uniform thin film on top of the substrate in order to flatten its surface. In this paper we will introduce the Advanced Virgo requirements and present the basic principle of the corrective coating technique. Then we show the results obtained experimentally on an initial Virgo substrate. Finally we provide an evaluation of the round-trip losses in the Fabry-Perot arm cavities once the corrected surface is used.

Effects of visual cues of object density on perception and anticipatory control of dexterous manipulation.

PubMed

Crajé, Céline; Santello, Marco; Gordon, Andrew M

2013-01-01

Anticipatory force planning during grasping is based on visual cues about the object's physical properties and sensorimotor memories of previous actions with grasped objects. Vision can be used to estimate object mass based on the object size to identify and recall sensorimotor memories of previously manipulated objects. It is not known whether subjects can use density cues to identify the object's center of mass (CM) and create compensatory moments in an anticipatory fashion during initial object lifts to prevent tilt. We asked subjects (n = 8) to estimate CM location of visually symmetric objects of uniform densities (plastic or brass, symmetric CM) and non-uniform densities (mixture of plastic and brass, asymmetric CM). We then asked whether subjects can use density cues to scale fingertip forces when lifting the visually symmetric objects of uniform and non-uniform densities. Subjects were able to accurately estimate an object's center of mass based on visual density cues. When the mass distribution was uniform, subjects could scale their fingertip forces in an anticipatory fashion based on the estimation. However, despite their ability to explicitly estimate CM location when object density was non-uniform, subjects were unable to scale their fingertip forces to create a compensatory moment and prevent tilt on initial lifts. Hefting object parts in the hand before the experiment did not affect this ability. This suggests a dichotomy between the ability to accurately identify the object's CM location for objects with non-uniform density cues and the ability to utilize this information to correctly scale their fingertip forces. These results are discussed in the context of possible neural mechanisms underlying sensorimotor integration linking visual cues and anticipatory control of grasping.

Nonuniform distribution of phase noise in distributed acoustic sensing based on phase-sensitive OTDR

NASA Astrophysics Data System (ADS)

Yu, Zhijie; Lu, Yang; Meng, Zhou

2017-10-01

A phase-sensitive optical time-domain reflectometry (∅-OTDR) implements distributed acoustic sensing (DAS) due to its ability for high sensitivity vibration measurement. Phase information of acoustic vibration events can be acquired by interrogation of the vibration-induced phase change between coherent Rayleigh scattering light from two points of the sensing fiber. And DAS can be realized when applying phase generated carrier (PGC) algorithm to the whole sensing fiber while the sensing fiber is transformed into a series of virtual sensing channels. Minimum detectable vibration of a ∅-OTDR is limited by phase noise level. In this paper, nonuniform distribution of phase noise of virtual sensing channels in a ∅-OTDR is investigated theoretically and experimentally. Correspondence between the intensity of Rayleigh scattering light and interference fading as well as polarization fading is analyzed considering inner interference of coherent Rayleigh light scattered from a multitude of scatters within pulse duration, and intensity noise related to the intensity of Rayleigh scattering light can be converted to phase noise while measuring vibration-induced phase change. Experiments are performed and the results confirm the predictions of the theoretical analysis. This study is essential for acquiring insight into nonuniformity of phase noise in DAS based on a ∅-OTDR, and would put forward some feasible methods to eliminate the effect of interference fading and polarization fading and optimize the minimum detectable vibration of a ∅-OTDR.

Semi-automatic sparse preconditioners for high-order finite element methods on non-uniform meshes

NASA Astrophysics Data System (ADS)

Austin, Travis M.; Brezina, Marian; Jamroz, Ben; Jhurani, Chetan; Manteuffel, Thomas A.; Ruge, John

2012-05-01

High-order finite elements often have a higher accuracy per degree of freedom than the classical low-order finite elements. However, in the context of implicit time-stepping methods, high-order finite elements present challenges to the construction of efficient simulations due to the high cost of inverting the denser finite element matrix. There are many cases where simulations are limited by the memory required to store the matrix and/or the algorithmic components of the linear solver. We are particularly interested in preconditioned Krylov methods for linear systems generated by discretization of elliptic partial differential equations with high-order finite elements. Using a preconditioner like Algebraic Multigrid can be costly in terms of memory due to the need to store matrix information at the various levels. We present a novel method for defining a preconditioner for systems generated by high-order finite elements that is based on a much sparser system than the original high-order finite element system. We investigate the performance for non-uniform meshes on a cube and a cubed sphere mesh, showing that the sparser preconditioner is more efficient and uses significantly less memory. Finally, we explore new methods to construct the sparse preconditioner and examine their effectiveness for non-uniform meshes. We compare results to a direct use of Algebraic Multigrid as a preconditioner and to a two-level additive Schwarz method.

Asynchronous signal-dependent non-uniform sampler

NASA Astrophysics Data System (ADS)

Can-Cimino, Azime; Chaparro, Luis F.; Sejdić, Ervin

2014-05-01

Analog sparse signals resulting from biomedical and sensing network applications are typically non-stationary with frequency-varying spectra. By ignoring that the maximum frequency of their spectra is changing, uniform sampling of sparse signals collects unnecessary samples in quiescent segments of the signal. A more appropriate sampling approach would be signal-dependent. Moreover, in many of these applications power consumption and analog processing are issues of great importance that need to be considered. In this paper we present a signal dependent non-uniform sampler that uses a Modified Asynchronous Sigma Delta Modulator which consumes low-power and can be processed using analog procedures. Using Prolate Spheroidal Wave Functions (PSWF) interpolation of the original signal is performed, thus giving an asynchronous analog to digital and digital to analog conversion. Stable solutions are obtained by using modulated PSWFs functions. The advantage of the adapted asynchronous sampler is that range of frequencies of the sparse signal is taken into account avoiding aliasing. Moreover, it requires saving only the zero-crossing times of the non-uniform samples, or their differences, and the reconstruction can be done using their quantized values and a PSWF-based interpolation. The range of frequencies analyzed can be changed and the sampler can be implemented as a bank of filters for unknown range of frequencies. The performance of the proposed algorithm is illustrated with an electroencephalogram (EEG) signal.

Preprocessing of SAR interferometric data using anisotropic diffusion filter

NASA Astrophysics Data System (ADS)

Sartor, Kenneth; Allen, Josef De Vaughn; Ganthier, Emile; Tenali, Gnana Bhaskar

2007-04-01

The most commonly used smoothing algorithms for complex data processing are blurring functions (i.e., Hanning, Taylor weighting, Gaussian, etc.). Unfortunately, the filters so designed blur the edges in a Synthetic Aperture Radar (SAR) scene, reduce the accuracy of features, and blur the fringe lines in an interferogram. For the Digital Surface Map (DSM) extraction, the blurring of these fringe lines causes inaccuracies in the height of the unwrapped terrain surface. Our goal here is to perform spatially non-uniform smoothing to overcome the above mentioned disadvantages. This is achieved by using a Complex Anisotropic Non-Linear Diffuser (CANDI) filter that is a spatially varying. In particular, an appropriate choice of the convection function in the CANDI filter is able to accomplish the non-uniform smoothing. This boundary sharpening intra-region smoothing filter acts on interferometric SAR (IFSAR) data with noise to produce an interferogram with significantly reduced noise contents and desirable local smoothing. Results of CANDI filtering will be discussed and compared with those obtained by using the standard filters on simulated data.

Apparent resistivity for transient electromagnetic induction logging and its correction in radial layer identification

NASA Astrophysics Data System (ADS)

Meng, Qingxin; Hu, Xiangyun; Pan, Heping; Xi, Yufei

2018-04-01

We propose an algorithm for calculating all-time apparent resistivity from transient electromagnetic induction logging. The algorithm is based on the whole-space transient electric field expression of the uniform model and Halley's optimisation. In trial calculations for uniform models, the all-time algorithm is shown to have high accuracy. We use the finite-difference time-domain method to simulate the transient electromagnetic field in radial two-layer models without wall rock and convert the simulation results to apparent resistivity using the all-time algorithm. The time-varying apparent resistivity reflects the radially layered geoelectrical structure of the models and the apparent resistivity of the earliest time channel follows the true resistivity of the inner layer; however, the apparent resistivity at larger times reflects the comprehensive electrical characteristics of the inner and outer layers. To accurately identify the outer layer resistivity based on the series relationship model of the layered resistance, the apparent resistivity and diffusion depth of the different time channels are approximately replaced by related model parameters; that is, we propose an apparent resistivity correction algorithm. By correcting the time-varying apparent resistivity of radial two-layer models, we show that the correction results reflect the radially layered electrical structure and the corrected resistivities of the larger time channels follow the outer layer resistivity. The transient electromagnetic fields of radially layered models with wall rock are simulated to obtain the 2D time-varying profiles of the apparent resistivity and corrections. The results suggest that the time-varying apparent resistivity and correction results reflect the vertical and radial geoelectrical structures. For models with small wall-rock effect, the correction removes the effect of the low-resistance inner layer on the apparent resistivity of the larger time channels.

Assessment, Validation, and Refinement of the Atmospheric Correction Algorithm for the Ocean Color Sensors. Chapter 19

NASA Technical Reports Server (NTRS)

Wang, Menghua

2003-01-01

The primary focus of this proposed research is for the atmospheric correction algorithm evaluation and development and satellite sensor calibration and characterization. It is well known that the atmospheric correction, which removes more than 90% of sensor-measured signals contributed from atmosphere in the visible, is the key procedure in the ocean color remote sensing (Gordon and Wang, 1994). The accuracy and effectiveness of the atmospheric correction directly affect the remotely retrieved ocean bio-optical products. On the other hand, for ocean color remote sensing, in order to obtain the required accuracy in the derived water-leaving signals from satellite measurements, an on-orbit vicarious calibration of the whole system, i.e., sensor and algorithms, is necessary. In addition, it is important to address issues of (i) cross-calibration of two or more sensors and (ii) in-orbit vicarious calibration of the sensor-atmosphere system. The goal of these researches is to develop methods for meaningful comparison and possible merging of data products from multiple ocean color missions. In the past year, much efforts have been on (a) understanding and correcting the artifacts appeared in the SeaWiFS-derived ocean and atmospheric produces; (b) developing an efficient method in generating the SeaWiFS aerosol lookup tables, (c) evaluating the effects of calibration error in the near-infrared (NIR) band to the atmospheric correction of the ocean color remote sensors, (d) comparing the aerosol correction algorithm using the singlescattering epsilon (the current SeaWiFS algorithm) vs. the multiple-scattering epsilon method, and (e) continuing on activities for the International Ocean-Color Coordinating Group (IOCCG) atmospheric correction working group. In this report, I will briefly present and discuss these and some other research activities.

A Computational Framework for High-Throughput Isotopic Natural Abundance Correction of Omics-Level Ultra-High Resolution FT-MS Datasets

PubMed Central

Carreer, William J.; Flight, Robert M.; Moseley, Hunter N. B.

2013-01-01

New metabolomics applications of ultra-high resolution and accuracy mass spectrometry can provide thousands of detectable isotopologues, with the number of potentially detectable isotopologues increasing exponentially with the number of stable isotopes used in newer isotope tracing methods like stable isotope-resolved metabolomics (SIRM) experiments. This huge increase in usable data requires software capable of correcting the large number of isotopologue peaks resulting from SIRM experiments in a timely manner. We describe the design of a new algorithm and software system capable of handling these high volumes of data, while including quality control methods for maintaining data quality. We validate this new algorithm against a previous single isotope correction algorithm in a two-step cross-validation. Next, we demonstrate the algorithm and correct for the effects of natural abundance for both 13C and 15N isotopes on a set of raw isotopologue intensities of UDP-N-acetyl-D-glucosamine derived from a 13C/15N-tracing experiment. Finally, we demonstrate the algorithm on a full omics-level dataset. PMID:24404440

Application and assessment of a robust elastic motion correction algorithm to dynamic MRI.

PubMed

Herrmann, K-H; Wurdinger, S; Fischer, D R; Krumbein, I; Schmitt, M; Hermosillo, G; Chaudhuri, K; Krishnan, A; Salganicoff, M; Kaiser, W A; Reichenbach, J R

2007-01-01

The purpose of this study was to assess the performance of a new motion correction algorithm. Twenty-five dynamic MR mammography (MRM) data sets and 25 contrast-enhanced three-dimensional peripheral MR angiographic (MRA) data sets which were affected by patient motion of varying severeness were selected retrospectively from routine examinations. Anonymized data were registered by a new experimental elastic motion correction algorithm. The algorithm works by computing a similarity measure for the two volumes that takes into account expected signal changes due to the presence of a contrast agent while penalizing other signal changes caused by patient motion. A conjugate gradient method is used to find the best possible set of motion parameters that maximizes the similarity measures across the entire volume. Images before and after correction were visually evaluated and scored by experienced radiologists with respect to reduction of motion, improvement of image quality, disappearance of existing lesions or creation of artifactual lesions. It was found that the correction improves image quality (76% for MRM and 96% for MRA) and diagnosability (60% for MRM and 96% for MRA).

Parallelization of Program to Optimize Simulated Trajectories (POST3D)

NASA Technical Reports Server (NTRS)

Hammond, Dana P.; Korte, John J. (Technical Monitor)

2001-01-01

This paper describes the parallelization of the Program to Optimize Simulated Trajectories (POST3D). POST3D uses a gradient-based optimization algorithm that reaches an optimum design point by moving from one design point to the next. The gradient calculations required to complete the optimization process, dominate the computational time and have been parallelized using a Single Program Multiple Data (SPMD) on a distributed memory NUMA (non-uniform memory access) architecture. The Origin2000 was used for the tests presented.

Heart Fibrillation and Parallel Supercomputers

NASA Technical Reports Server (NTRS)

Kogan, B. Y.; Karplus, W. J.; Chudin, E. E.

1997-01-01

The Luo and Rudy 3 cardiac cell mathematical model is implemented on the parallel supercomputer CRAY - T3D. The splitting algorithm combined with variable time step and an explicit method of integration provide reasonable solution times and almost perfect scaling for rectilinear wave propagation. The computer simulation makes it possible to observe new phenomena: the break-up of spiral waves caused by intracellular calcium and dynamics and the non-uniformity of the calcium distribution in space during the onset of the spiral wave.

Calibrated Mid-wave Infrared (IR) (MidIR) and Long-wave IR (LWIR) Stokes and Degree-of-Liner Polarization (DOLP)

DTIC Science & Technology

2008-09-01

LWIR long-wave IR MCT mercury cadmium telluride MidIR mid-wave IR NUC nonuniformity corrections ROI regions-of-interest 22 No. of Copies...Calibrated Mid-wave Infrared (IR) (MidIR) and Long-wave IR ( LWIR ) Stokes and Degree-of-Liner Polarization (DOLP) by Kristan P. Gurton and... LWIR ) Stokes and Degree-of-Liner Polarization (DOLP) Kristan P. Gurton and Melvin Felton Computational and Information Sciences Directorate

An evaluation of the Iosipescu specimen for composite materials shear property measurement

NASA Technical Reports Server (NTRS)

Morton, J.; Ho, H.; Tsai, M. Y.; Farley, G. L.

1992-01-01

A detailed evaluation of the suitability of the Iosipescu specimen tested in the modified Wyoming fixture is presented. A linear finite element model of the specimen is used to assess the uniformity of the shear stress field in the vicinity of the notch, and demonstrate the effect of the nonuniform stress field upon strain gage measurements used for the determination of composite shear moduli. Based upon test results from graphite-epoxy laminates, the proximity of the load introduction point to the test section and the material orthotropy greatly influence the individual gage readings, however, shear modulus determination is not significantly affected by the lack of pure shear. Correction factors are needed to allow for the nonuniformity of the strain field and the use of the average shear stress in the shear modulus evaluation. The correction factors are determined for the region occupied by the strain gage rosette. A comparison of the strain gage readings from one surface of a specimen with corresponding data from moire interferometry on the opposite face documented an extreme sensitivity of some fiber orientations to eccentric loading which induced twisting and spurious shear stress-strain curves. The discovery of specimen twisting explains the apparently inconsistent shear property data found in the literature. Recommendations for improving the reliability and accuracy of the shear modulus values are made, and the implications for shear strength measurement discussed.

Validation of the Thematic Mapper radiometric and geometric correction algorithms

NASA Technical Reports Server (NTRS)

Fischel, D.

1984-01-01

The radiometric and geometric correction algorithms for Thematic Mapper are critical to subsequent successful information extraction. Earlier Landsat scanners, known as Multispectral Scanners, produce imagery which exhibits striping due to mismatching of detector gains and biases. Thematic Mapper exhibits the same phenomenon at three levels: detector-to-detector, scan-to-scan, and multiscan striping. The cause of these variations has been traced to variations in the dark current of the detectors. An alternative formulation has been tested and shown to be very satisfactory. Unfortunately, the Thematic Mapper detectors exhibit saturation effects suffered while viewing extensive cloud areas, and is not easily correctable. The geometric correction algorithm has been shown to be remarkably reliable. Only minor and modest improvements are indicated and shown to be effective.

Quantitative Evaluation of 2 Scatter-Correction Techniques for 18F-FDG Brain PET/MRI in Regard to MR-Based Attenuation Correction.

PubMed

Teuho, Jarmo; Saunavaara, Virva; Tolvanen, Tuula; Tuokkola, Terhi; Karlsson, Antti; Tuisku, Jouni; Teräs, Mika

2017-10-01

In PET, corrections for photon scatter and attenuation are essential for visual and quantitative consistency. MR attenuation correction (MRAC) is generally conducted by image segmentation and assignment of discrete attenuation coefficients, which offer limited accuracy compared with CT attenuation correction. Potential inaccuracies in MRAC may affect scatter correction, because the attenuation image (μ-map) is used in single scatter simulation (SSS) to calculate the scatter estimate. We assessed the impact of MRAC to scatter correction using 2 scatter-correction techniques and 3 μ-maps for MRAC. Methods: The tail-fitted SSS (TF-SSS) and a Monte Carlo-based single scatter simulation (MC-SSS) algorithm implementations on the Philips Ingenuity TF PET/MR were used with 1 CT-based and 2 MR-based μ-maps. Data from 7 subjects were used in the clinical evaluation, and a phantom study using an anatomic brain phantom was conducted. Scatter-correction sinograms were evaluated for each scatter correction method and μ-map. Absolute image quantification was investigated with the phantom data. Quantitative assessment of PET images was performed by volume-of-interest and ratio image analysis. Results: MRAC did not result in large differences in scatter algorithm performance, especially with TF-SSS. Scatter sinograms and scatter fractions did not reveal large differences regardless of the μ-map used. TF-SSS showed slightly higher absolute quantification. The differences in volume-of-interest analysis between TF-SSS and MC-SSS were 3% at maximum in the phantom and 4% in the patient study. Both algorithms showed excellent correlation with each other with no visual differences between PET images. MC-SSS showed a slight dependency on the μ-map used, with a difference of 2% on average and 4% at maximum when a μ-map without bone was used. Conclusion: The effect of different MR-based μ-maps on the performance of scatter correction was minimal in non-time-of-flight 18 F-FDG PET/MR brain imaging. The SSS algorithm was not affected significantly by MRAC. The performance of the MC-SSS algorithm is comparable but not superior to TF-SSS, warranting further investigations of algorithm optimization and performance with different radiotracers and time-of-flight imaging. © 2017 by the Society of Nuclear Medicine and Molecular Imaging.

An adaptive optics approach for laser beam correction in turbulence utilizing a modified plenoptic camera

NASA Astrophysics Data System (ADS)

Ko, Jonathan; Wu, Chensheng; Davis, Christopher C.

2015-09-01

Adaptive optics has been widely used in the field of astronomy to correct for atmospheric turbulence while viewing images of celestial bodies. The slightly distorted incoming wavefronts are typically sensed with a Shack-Hartmann sensor and then corrected with a deformable mirror. Although this approach has proven to be effective for astronomical purposes, a new approach must be developed when correcting for the deep turbulence experienced in ground to ground based optical systems. We propose the use of a modified plenoptic camera as a wavefront sensor capable of accurately representing an incoming wavefront that has been significantly distorted by strong turbulence conditions (C2n <10-13 m- 2/3). An intelligent correction algorithm can then be developed to reconstruct the perturbed wavefront and use this information to drive a deformable mirror capable of correcting the major distortions. After the large distortions have been corrected, a secondary mode utilizing more traditional adaptive optics algorithms can take over to fine tune the wavefront correction. This two-stage algorithm can find use in free space optical communication systems, in directed energy applications, as well as for image correction purposes.

Algorithm for Atmospheric Corrections of Aircraft and Satellite Imagery

NASA Technical Reports Server (NTRS)

Fraser, Robert S.; Kaufman, Yoram J.; Ferrare, Richard A.; Mattoo, Shana

1989-01-01

A simple and fast atmospheric correction algorithm is described which is used to correct radiances of scattered sunlight measured by aircraft and/or satellite above a uniform surface. The atmospheric effect, the basic equations, a description of the computational procedure, and a sensitivity study are discussed. The program is designed to take the measured radiances, view and illumination directions, and the aerosol and gaseous absorption optical thickness to compute the radiance just above the surface, the irradiance on the surface, and surface reflectance. Alternatively, the program will compute the upward radiance at a specific altitude for a given surface reflectance, view and illumination directions, and aerosol and gaseous absorption optical thickness. The algorithm can be applied for any view and illumination directions and any wavelength in the range 0.48 micron to 2.2 micron. The relation between the measured radiance and surface reflectance, which is expressed as a function of atmospheric properties and measurement geometry, is computed using a radiative transfer routine. The results of the computations are presented in a table which forms the basis of the correction algorithm. The algorithm can be used for atmospheric corrections in the presence of a rural aerosol. The sensitivity of the derived surface reflectance to uncertainties in the model and input data is discussed.

Algorithm for atmospheric corrections of aircraft and satellite imagery

NASA Technical Reports Server (NTRS)

Fraser, R. S.; Ferrare, R. A.; Kaufman, Y. J.; Markham, B. L.; Mattoo, S.

1992-01-01

A simple and fast atmospheric correction algorithm is described which is used to correct radiances of scattered sunlight measured by aircraft and/or satellite above a uniform surface. The atmospheric effect, the basic equations, a description of the computational procedure, and a sensitivity study are discussed. The program is designed to take the measured radiances, view and illumination directions, and the aerosol and gaseous absorption optical thickness to compute the radiance just above the surface, the irradiance on the surface, and surface reflectance. Alternatively, the program will compute the upward radiance at a specific altitude for a given surface reflectance, view and illumination directions, and aerosol and gaseous absorption optical thickness. The algorithm can be applied for any view and illumination directions and any wavelength in the range 0.48 micron to 2.2 microns. The relation between the measured radiance and surface reflectance, which is expressed as a function of atmospheric properties and measurement geometry, is computed using a radiative transfer routine. The results of the computations are presented in a table which forms the basis of the correction algorithm. The algorithm can be used for atmospheric corrections in the presence of a rural aerosol. The sensitivity of the derived surface reflectance to uncertainties in the model and input data is discussed.

Approximate string matching algorithms for limited-vocabulary OCR output correction

NASA Astrophysics Data System (ADS)

Lasko, Thomas A.; Hauser, Susan E.

2000-12-01

Five methods for matching words mistranslated by optical character recognition to their most likely match in a reference dictionary were tested on data from the archives of the National Library of Medicine. The methods, including an adaptation of the cross correlation algorithm, the generic edit distance algorithm, the edit distance algorithm with a probabilistic substitution matrix, Bayesian analysis, and Bayesian analysis on an actively thinned reference dictionary were implemented and their accuracy rates compared. Of the five, the Bayesian algorithm produced the most correct matches (87%), and had the advantage of producing scores that have a useful and practical interpretation.

Evaluation of two Vaisala RS92 radiosonde solar radiative dry bias correction algorithms

DOE PAGES

Dzambo, Andrew M.; Turner, David D.; Mlawer, Eli J.

2016-04-12

Solar heating of the relative humidity (RH) probe on Vaisala RS92 radiosondes results in a large dry bias in the upper troposphere. Two different algorithms (Miloshevich et al., 2009, MILO hereafter; and Wang et al., 2013, WANG hereafter) have been designed to account for this solar radiative dry bias (SRDB). These corrections are markedly different with MILO adding up to 40 % more moisture to the original radiosonde profile than WANG; however, the impact of the two algorithms varies with height. The accuracy of these two algorithms is evaluated using three different approaches: a comparison of precipitable water vapor (PWV),more » downwelling radiative closure with a surface-based microwave radiometer at a high-altitude site (5.3 km m.s.l.), and upwelling radiative closure with the space-based Atmospheric Infrared Sounder (AIRS). The PWV computed from the uncorrected and corrected RH data is compared against PWV retrieved from ground-based microwave radiometers at tropical, midlatitude, and arctic sites. Although MILO generally adds more moisture to the original radiosonde profile in the upper troposphere compared to WANG, both corrections yield similar changes to the PWV, and the corrected data agree well with the ground-based retrievals. The two closure activities – done for clear-sky scenes – use the radiative transfer models MonoRTM and LBLRTM to compute radiance from the radiosonde profiles to compare against spectral observations. Both WANG- and MILO-corrected RHs are statistically better than original RH in all cases except for the driest 30 % of cases in the downwelling experiment, where both algorithms add too much water vapor to the original profile. In the upwelling experiment, the RH correction applied by the WANG vs. MILO algorithm is statistically different above 10 km for the driest 30 % of cases and above 8 km for the moistest 30 % of cases, suggesting that the MILO correction performs better than the WANG in clear-sky scenes. Lastly, the cause of this statistical significance is likely explained by the fact the WANG correction also accounts for cloud cover – a condition not accounted for in the radiance closure experiments.« less

Evaluation of two Vaisala RS92 radiosonde solar radiative dry bias correction algorithms

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dzambo, Andrew M.; Turner, David D.; Mlawer, Eli J.

Solar heating of the relative humidity (RH) probe on Vaisala RS92 radiosondes results in a large dry bias in the upper troposphere. Two different algorithms (Miloshevich et al., 2009, MILO hereafter; and Wang et al., 2013, WANG hereafter) have been designed to account for this solar radiative dry bias (SRDB). These corrections are markedly different with MILO adding up to 40 % more moisture to the original radiosonde profile than WANG; however, the impact of the two algorithms varies with height. The accuracy of these two algorithms is evaluated using three different approaches: a comparison of precipitable water vapor (PWV),more » downwelling radiative closure with a surface-based microwave radiometer at a high-altitude site (5.3 km m.s.l.), and upwelling radiative closure with the space-based Atmospheric Infrared Sounder (AIRS). The PWV computed from the uncorrected and corrected RH data is compared against PWV retrieved from ground-based microwave radiometers at tropical, midlatitude, and arctic sites. Although MILO generally adds more moisture to the original radiosonde profile in the upper troposphere compared to WANG, both corrections yield similar changes to the PWV, and the corrected data agree well with the ground-based retrievals. The two closure activities – done for clear-sky scenes – use the radiative transfer models MonoRTM and LBLRTM to compute radiance from the radiosonde profiles to compare against spectral observations. Both WANG- and MILO-corrected RHs are statistically better than original RH in all cases except for the driest 30 % of cases in the downwelling experiment, where both algorithms add too much water vapor to the original profile. In the upwelling experiment, the RH correction applied by the WANG vs. MILO algorithm is statistically different above 10 km for the driest 30 % of cases and above 8 km for the moistest 30 % of cases, suggesting that the MILO correction performs better than the WANG in clear-sky scenes. Lastly, the cause of this statistical significance is likely explained by the fact the WANG correction also accounts for cloud cover – a condition not accounted for in the radiance closure experiments.« less

Correction of motion artifacts in endoscopic optical coherence tomography and autofluorescence images based on azimuthal en face image registration.

PubMed

Abouei, Elham; Lee, Anthony M D; Pahlevaninezhad, Hamid; Hohert, Geoffrey; Cua, Michelle; Lane, Pierre; Lam, Stephen; MacAulay, Calum

2018-01-01

We present a method for the correction of motion artifacts present in two- and three-dimensional in vivo endoscopic images produced by rotary-pullback catheters. This method can correct for cardiac/breathing-based motion artifacts and catheter-based motion artifacts such as nonuniform rotational distortion (NURD). This method assumes that en face tissue imaging contains slowly varying structures that are roughly parallel to the pullback axis. The method reduces motion artifacts using a dynamic time warping solution through a cost matrix that measures similarities between adjacent frames in en face images. We optimize and demonstrate the suitability of this method using a real and simulated NURD phantom and in vivo endoscopic pulmonary optical coherence tomography and autofluorescence images. Qualitative and quantitative evaluations of the method show an enhancement of the image quality. (2018) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE).

Design Document for Differential GPS Ground Reference Station Pseudorange Correction Generation Algorithm

DOT National Transportation Integrated Search

1986-12-01

The algorithms described in this report determine the differential corrections to be broadcast to users of the Global Positioning System (GPS) who require higher accuracy navigation or position information than the 30 to 100 meters that GPS normally ...

Hard decoding algorithm for optimizing thresholds under general Markovian noise

NASA Astrophysics Data System (ADS)

Chamberland, Christopher; Wallman, Joel; Beale, Stefanie; Laflamme, Raymond

2017-04-01

Quantum error correction is instrumental in protecting quantum systems from noise in quantum computing and communication settings. Pauli channels can be efficiently simulated and threshold values for Pauli error rates under a variety of error-correcting codes have been obtained. However, realistic quantum systems can undergo noise processes that differ significantly from Pauli noise. In this paper, we present an efficient hard decoding algorithm for optimizing thresholds and lowering failure rates of an error-correcting code under general completely positive and trace-preserving (i.e., Markovian) noise. We use our hard decoding algorithm to study the performance of several error-correcting codes under various non-Pauli noise models by computing threshold values and failure rates for these codes. We compare the performance of our hard decoding algorithm to decoders optimized for depolarizing noise and show improvements in thresholds and reductions in failure rates by several orders of magnitude. Our hard decoding algorithm can also be adapted to take advantage of a code's non-Pauli transversal gates to further suppress noise. For example, we show that using the transversal gates of the 5-qubit code allows arbitrary rotations around certain axes to be perfectly corrected. Furthermore, we show that Pauli twirling can increase or decrease the threshold depending upon the code properties. Lastly, we show that even if the physical noise model differs slightly from the hypothesized noise model used to determine an optimized decoder, failure rates can still be reduced by applying our hard decoding algorithm.

Prior image constrained scatter correction in cone-beam computed tomography image-guided radiation therapy.

PubMed

Brunner, Stephen; Nett, Brian E; Tolakanahalli, Ranjini; Chen, Guang-Hong

2011-02-21

X-ray scatter is a significant problem in cone-beam computed tomography when thicker objects and larger cone angles are used, as scattered radiation can lead to reduced contrast and CT number inaccuracy. Advances have been made in x-ray computed tomography (CT) by incorporating a high quality prior image into the image reconstruction process. In this paper, we extend this idea to correct scatter-induced shading artifacts in cone-beam CT image-guided radiation therapy. Specifically, this paper presents a new scatter correction algorithm which uses a prior image with low scatter artifacts to reduce shading artifacts in cone-beam CT images acquired under conditions of high scatter. The proposed correction algorithm begins with an empirical hypothesis that the target image can be written as a weighted summation of a series of basis images that are generated by raising the raw cone-beam projection data to different powers, and then, reconstructing using the standard filtered backprojection algorithm. The weight for each basis image is calculated by minimizing the difference between the target image and the prior image. The performance of the scatter correction algorithm is qualitatively and quantitatively evaluated through phantom studies using a Varian 2100 EX System with an on-board imager. Results show that the proposed scatter correction algorithm using a prior image with low scatter artifacts can substantially mitigate scatter-induced shading artifacts in both full-fan and half-fan modes.

Multiscale computations with a wavelet-adaptive algorithm

NASA Astrophysics Data System (ADS)

Rastigejev, Yevgenii Anatolyevich

A wavelet-based adaptive multiresolution algorithm for the numerical solution of multiscale problems governed by partial differential equations is introduced. The main features of the method include fast algorithms for the calculation of wavelet coefficients and approximation of derivatives on nonuniform stencils. The connection between the wavelet order and the size of the stencil is established. The algorithm is based on the mathematically well established wavelet theory. This allows us to provide error estimates of the solution which are used in conjunction with an appropriate threshold criteria to adapt the collocation grid. The efficient data structures for grid representation as well as related computational algorithms to support grid rearrangement procedure are developed. The algorithm is applied to the simulation of phenomena described by Navier-Stokes equations. First, we undertake the study of the ignition and subsequent viscous detonation of a H2 : O2 : Ar mixture in a one-dimensional shock tube. Subsequently, we apply the algorithm to solve the two- and three-dimensional benchmark problem of incompressible flow in a lid-driven cavity at large Reynolds numbers. For these cases we show that solutions of comparable accuracy as the benchmarks are obtained with more than an order of magnitude reduction in degrees of freedom. The simulations show the striking ability of the algorithm to adapt to a solution having different scales at different spatial locations so as to produce accurate results at a relatively low computational cost.

Design of the OMPS limb sensor correction algorithm

NASA Astrophysics Data System (ADS)

Jaross, Glen; McPeters, Richard; Seftor, Colin; Kowitt, Mark

The Sensor Data Records (SDR) for the Ozone Mapping and Profiler Suite (OMPS) on NPOESS (National Polar-orbiting Operational Environmental Satellite System) contains geolocated and calibrated radiances, and are similar to the Level 1 data of NASA Earth Observing System and other programs. The SDR algorithms (one for each of the 3 OMPS focal planes) are the processes by which the Raw Data Records (RDR) from the OMPS sensors are converted into the records that contain all data necessary for ozone retrievals. Consequently, the algorithms must correct and calibrate Earth signals, geolocate the data, and identify and ingest collocated ancillary data. As with other limb sensors, ozone profile retrievals are relatively insensitive to calibration errors due to the use of altitude normalization and wavelength pairing. But the profile retrievals as they pertain to OMPS are not immune from sensor changes. In particular, the OMPS Limb sensor images an altitude range of > 100 km and a spectral range of 290-1000 nm on its detector. Uncorrected sensor degradation and spectral registration drifts can lead to changes in the measured radiance profile, which in turn affects the ozone trend measurement. Since OMPS is intended for long-term monitoring, sensor calibration is a specific concern. The calibration is maintained via the ground data processing. This means that all sensor calibration data, including direct solar measurements, are brought down in the raw data and processed separately by the SDR algorithms. One of the sensor corrections performed by the algorithm is the correction for stray light. The imaging spectrometer and the unique focal plane design of OMPS makes these corrections particularly challenging and important. Following an overview of the algorithm flow, we will briefly describe the sensor stray light characterization and the correction approach used in the code.

Evaluation of a prototype correction algorithm to reduce metal artefacts in flat detector computed tomography of scaphoid fixation screws.

PubMed

Filli, Lukas; Marcon, Magda; Scholz, Bernhard; Calcagni, Maurizio; Finkenstädt, Tim; Andreisek, Gustav; Guggenberger, Roman

2014-12-01

The aim of this study was to evaluate a prototype correction algorithm to reduce metal artefacts in flat detector computed tomography (FDCT) of scaphoid fixation screws. FDCT has gained interest in imaging small anatomic structures of the appendicular skeleton. Angiographic C-arm systems with flat detectors allow fluoroscopy and FDCT imaging in a one-stop procedure emphasizing their role as an ideal intraoperative imaging tool. However, FDCT imaging can be significantly impaired by artefacts induced by fixation screws. Following ethical board approval, commercially available scaphoid fixation screws were inserted into six cadaveric specimens in order to fix artificially induced scaphoid fractures. FDCT images corrected with the algorithm were compared to uncorrected images both quantitatively and qualitatively by two independent radiologists in terms of artefacts, screw contour, fracture line visibility, bone visibility, and soft tissue definition. Normal distribution of variables was evaluated using the Kolmogorov-Smirnov test. In case of normal distribution, quantitative variables were compared using paired Student's t tests. The Wilcoxon signed-rank test was used for quantitative variables without normal distribution and all qualitative variables. A p value of < 0.05 was considered to indicate statistically significant differences. Metal artefacts were significantly reduced by the correction algorithm (p < 0.001), and the fracture line was more clearly defined (p < 0.01). The inter-observer reliability was "almost perfect" (intra-class correlation coefficient 0.85, p < 0.001). The prototype correction algorithm in FDCT for metal artefacts induced by scaphoid fixation screws may facilitate intra- and postoperative follow-up imaging. Flat detector computed tomography (FDCT) is a helpful imaging tool for scaphoid fixation. The correction algorithm significantly reduces artefacts in FDCT induced by scaphoid fixation screws. This may facilitate intra- and postoperative follow-up imaging.

Assessment of a Bidirectional Reflectance Distribution Correction of Above-Water and Satellite Water-Leaving Radiance in Coastal Waters

NASA Technical Reports Server (NTRS)

Hlaing, Soe; Gilerson, Alexander; Harmal, Tristan; Tonizzo, Alberto; Weidemann, Alan; Arnone, Robert; Ahmed, Samir

2012-01-01

Water-leaving radiances, retrieved from in situ or satellite measurements, need to be corrected for the bidirectional properties of the measured light in order to standardize the data and make them comparable with each other. The current operational algorithm for the correction of bidirectional effects from the satellite ocean color data is optimized for typical oceanic waters. However, versions of bidirectional reflectance correction algorithms specifically tuned for typical coastal waters and other case 2 conditions are particularly needed to improve the overall quality of those data. In order to analyze the bidirectional reflectance distribution function (BRDF) of case 2 waters, a dataset of typical remote sensing reflectances was generated through radiative transfer simulations for a large range of viewing and illumination geometries. Based on this simulated dataset, a case 2 water focused remote sensing reflectance model is proposed to correct above-water and satellite water-leaving radiance data for bidirectional effects. The proposed model is first validated with a one year time series of in situ above-water measurements acquired by collocated multispectral and hyperspectral radiometers, which have different viewing geometries installed at the Long Island Sound Coastal Observatory (LISCO). Match-ups and intercomparisons performed on these concurrent measurements show that the proposed algorithm outperforms the algorithm currently in use at all wavelengths, with average improvement of 2.4% over the spectral range. LISCO's time series data have also been used to evaluate improvements in match-up comparisons of Moderate Resolution Imaging Spectroradiometer satellite data when the proposed BRDF correction is used in lieu of the current algorithm. It is shown that the discrepancies between coincident in-situ sea-based and satellite data decreased by 3.15% with the use of the proposed algorithm.

Correction of nonuniformity error of Gafchromic EBT2 and EBT3

PubMed Central

Gotanda, Rumi; Gotanda, Tatsuhiro; Akagawa, Takuya; Tanki, Nobuyoshi; Kuwano, Tadao; Yabunaka, Kouichi

2016-01-01

This study investigates an X‐ray dose measurement method for computed tomography using Gafchromic films. Nonuniformity of the active layer is a major problem in Gafchromic films. In radiotherapy, nonuniformity error is reduced by applying the double‐exposure technique, but this is impractical in diagnostic radiology because of the heel effect. Therefore, we propose replacing the X‐rays in the double‐exposure technique with ultraviolet (UV)‐A irradiation of Gafchromic EBT2 and EBT3. To improve the reproducibility of the scan position, Gafchromic EBT2 and EBT3 films were attached to a 3‐mm‐thick acrylic plate. The samples were then irradiated with a 10 W UV‐A fluorescent lamp placed at a distance of 72 cm for 30, 60, and 90 minutes. The profile curves were evaluated along the long and short axes of the film center, and the standard deviations of the pixel values were calculated over large areas of the films. Paired t‐test was performed. UV‐A irradiation exerted a significant effect on Gafchromic EBT2 (paired t‐test; p=0.0275) but not on EBT3 (paired t‐test; p=0.2785). Similarly, the homogeneity was improved in Gafchromic EBT2 but not in EBT3. Therefore, the double‐exposure technique under UV‐A irradiation is suitable only for EBT2 films. PACS number(s): 87.53 Bn PMID:27167258

A compensation method for the full phase retardance nonuniformity in phase-only liquid crystal on silicon spatial light modulators.

PubMed

Teng, Long; Pivnenko, Mike; Robertson, Brian; Zhang, Rong; Chu, Daping

2014-10-20

A simple and efficient compensation method for the full correction of both the anisotropic and isotropic nonuniformity of the light phase retardance in a liquid crystal (LC) layer is presented. This is achieved by accurate measurement of the spatial variation of the LC layer's thickness with the help of a calibrated liquid crystal wedge, rather than solely relying on the light intensity profile recorded using two crossed polarizers. Local phase retardance as a function of the applied voltage is calculated with its LC thickness and a set of reference data measured from the intensity of the reflected light using two crossed polarizers. Compensation of the corresponding phase nonuniformity is realized by applying adjusted local voltage signals for different grey levels. To demonstrate its effectiveness, the proposed method is applied to improve the performance of a phase-only liquid crystal on silicon (LCOS) spatial light modulator (SLM). The power of the first diffraction order measured with the binary phase gratings compensated by this method is compared with that compensated by the conventional crossed-polarizer method. The results show that the phase compensation method proposed here can increase the dynamic range of the first order diffraction power significantly from 15~21 dB to over 38 dB, while the crossed-polarizer method can only increase it to 23 dB.

Effects of illumination on image reconstruction via Fourier ptychography

NASA Astrophysics Data System (ADS)

Cao, Xinrui; Sinzinger, Stefan

2017-12-01

The Fourier ptychographic microscopy (FPM) technique provides high-resolution images by combining a traditional imaging system, e.g. a microscope or a 4f-imaging system, with a multiplexing illumination system, e.g. an LED array and numerical image processing for enhanced image reconstruction. In order to numerically combine images that are captured under varying illumination angles, an iterative phase-retrieval algorithm is often applied. However, in practice, the performance of the FPM algorithm degrades due to the imperfections of the optical system, the image noise caused by the camera, etc. To eliminate the influence of the aberrations of the imaging system, an embedded pupil function recovery (EPRY)-FPM algorithm has been proposed [Opt. Express 22, 4960-4972 (2014)]. In this paper, we study how the performance of FPM and EPRY-FPM algorithms are affected by imperfections of the illumination system using both numerical simulations and experiments. The investigated imperfections include varying and non-uniform intensities, and wavefront aberrations. Our study shows that the aberrations of the illumination system significantly affect the performance of both FPM and EPRY-FPM algorithms. Hence, in practice, aberrations in the illumination system gain significant influence on the resulting image quality.

Deformations of a pre-stretched elastic membrane driven by non-uniform electroosmotic flow

NASA Astrophysics Data System (ADS)

Bercovici, Moran; Boyko, Evgeniy; Gat, Amir

2016-11-01

We study viscous-elastic dynamics of fluid confined between a rigid plate and a pre-stretched elastic membrane subjected to non-uniform electroosmotic flow, and focus on the case of a finite-size membrane clamped at its boundaries. Considering small deformations of a strongly pre-stretched membrane, and applying the lubrication approximation for the flow, we derive a linearized leading-order non-homogenous 4th order diffusion equation governing the deformation and pressure fields. We derive a time-dependent Green's function for a rectangular domain, and use it to obtain several basic solutions for the cases of constant and time varying electric fields. In addition, defining an asymptotic expansion where the small parameter is the ratio of the induced to prescribed tension, we obtain a set of four one-way coupled equations providing a first order correction for the deformation field. Funded by the European Research Council (ERC) under the Horizon 2020 Research and Innovation Programme, Grant agreement No. 678734 (MetamorphChip).

A new approach to increase the two-dimensional detection probability of CSI algorithm for WAS-GMTI mode

NASA Astrophysics Data System (ADS)

Yan, H.; Zheng, M. J.; Zhu, D. Y.; Wang, H. T.; Chang, W. S.

2015-07-01

When using clutter suppression interferometry (CSI) algorithm to perform signal processing in a three-channel wide-area surveillance radar system, the primary concern is to effectively suppress the ground clutter. However, a portion of moving target's energy is also lost in the process of channel cancellation, which is often neglected in conventional applications. In this paper, we firstly investigate the two-dimensional (radial velocity dimension and squint angle dimension) residual amplitude of moving targets after channel cancellation with CSI algorithm. Then, a new approach is proposed to increase the two-dimensional detection probability of moving targets by reserving the maximum value of the three channel cancellation results in non-uniformly spaced channel system. Besides, theoretical expression of the false alarm probability with the proposed approach is derived in the paper. Compared with the conventional approaches in uniformly spaced channel system, simulation results validate the effectiveness of the proposed approach. To our knowledge, it is the first time that the two-dimensional detection probability of CSI algorithm is studied.

Coverage maximization under resource constraints using a nonuniform proliferating random walk.

PubMed

Saha, Sudipta; Ganguly, Niloy

2013-02-01

Information management services on networks, such as search and dissemination, play a key role in any large-scale distributed system. One of the most desirable features of these services is the maximization of the coverage, i.e., the number of distinctly visited nodes under constraints of network resources as well as time. However, redundant visits of nodes by different message packets (modeled, e.g., as walkers) initiated by the underlying algorithms for these services cause wastage of network resources. In this work, using results from analytical studies done in the past on a K-random-walk-based algorithm, we identify that redundancy quickly increases with an increase in the density of the walkers. Based on this postulate, we design a very simple distributed algorithm which dynamically estimates the density of the walkers and thereby carefully proliferates walkers in sparse regions. We use extensive computer simulations to test our algorithm in various kinds of network topologies whereby we find it to be performing particularly well in networks that are highly clustered as well as sparse.

Comparison of various contact algorithms for poroelastic tissues.

PubMed

Galbusera, Fabio; Bashkuev, Maxim; Wilke, Hans-Joachim; Shirazi-Adl, Aboulfazl; Schmidt, Hendrik

2014-01-01

Capabilities of the commercial finite element package ABAQUS in simulating frictionless contact between two saturated porous structures were evaluated and compared with those of an open source code, FEBio. In ABAQUS, both the default contact implementation and another algorithm based on an iterative approach requiring script programming were considered. Test simulations included a patch test of two cylindrical slabs in a gapless contact and confined compression conditions; a confined compression test of a porous cylindrical slab with a spherical porous indenter; and finally two unconfined compression tests of soft tissues mimicking diarthrodial joints. The patch test showed almost identical results for all algorithms. On the contrary, the confined and unconfined compression tests demonstrated large differences related to distinct physical and boundary conditions considered in each of the three contact algorithms investigated in this study. In general, contact with non-uniform gaps between fluid-filled porous structures could be effectively simulated with either ABAQUS or FEBio. The user should be aware of the parameter definitions, assumptions and limitations in each case, and take into consideration the physics and boundary conditions of the problem of interest when searching for the most appropriate model.

A simplified procedure for correcting both errors and erasures of a Reed-Solomon code using the Euclidean algorithm

NASA Technical Reports Server (NTRS)

Truong, T. K.; Hsu, I. S.; Eastman, W. L.; Reed, I. S.

1987-01-01

It is well known that the Euclidean algorithm or its equivalent, continued fractions, can be used to find the error locator polynomial and the error evaluator polynomial in Berlekamp's key equation needed to decode a Reed-Solomon (RS) code. A simplified procedure is developed and proved to correct erasures as well as errors by replacing the initial condition of the Euclidean algorithm by the erasure locator polynomial and the Forney syndrome polynomial. By this means, the errata locator polynomial and the errata evaluator polynomial can be obtained, simultaneously and simply, by the Euclidean algorithm only. With this improved technique the complexity of time domain RS decoders for correcting both errors and erasures is reduced substantially from previous approaches. As a consequence, decoders for correcting both errors and erasures of RS codes can be made more modular, regular, simple, and naturally suitable for both VLSI and software implementation. An example illustrating this modified decoding procedure is given for a (15, 9) RS code.

Atmospheric correction of SeaWiFS imagery for turbid coastal and inland waters.

PubMed

Ruddick, K G; Ovidio, F; Rijkeboer, M

2000-02-20

The standard SeaWiFS atmospheric correction algorithm, designed for open ocean water, has been extended for use over turbid coastal and inland waters. Failure of the standard algorithm over turbid waters can be attributed to invalid assumptions of zero water-leaving radiance for the near-infrared bands at 765 and 865 nm. In the present study these assumptions are replaced by the assumptions of spatial homogeneity of the 765:865-nm ratios for aerosol reflectance and for water-leaving reflectance. These two ratios are imposed as calibration parameters after inspection of the Rayleigh-corrected reflectance scatterplot. The performance of the new algorithm is demonstrated for imagery of Belgian coastal waters and yields physically realistic water-leaving radiance spectra. A preliminary comparison with in situ radiance spectra for the Dutch Lake Markermeer shows significant improvement over the standard atmospheric correction algorithm. An analysis is made of the sensitivity of results to the choice of calibration parameters, and perspectives for application of the method to other sensors are briefly discussed.

A robust in-situ warp-correction algorithm for VISAR streak camera data at the National Ignition Facility

NASA Astrophysics Data System (ADS)

Labaria, George R.; Warrick, Abbie L.; Celliers, Peter M.; Kalantar, Daniel H.

2015-02-01

The National Ignition Facility (NIF) at the Lawrence Livermore National Laboratory is a 192-beam pulsed laser system for high energy density physics experiments. Sophisticated diagnostics have been designed around key performance metrics to achieve ignition. The Velocity Interferometer System for Any Reflector (VISAR) is the primary diagnostic for measuring the timing of shocks induced into an ignition capsule. The VISAR system utilizes three streak cameras; these streak cameras are inherently nonlinear and require warp corrections to remove these nonlinear effects. A detailed calibration procedure has been developed with National Security Technologies (NSTec) and applied to the camera correction analysis in production. However, the camera nonlinearities drift over time affecting the performance of this method. An in-situ fiber array is used to inject a comb of pulses to generate a calibration correction in order to meet the timing accuracy requirements of VISAR. We develop a robust algorithm for the analysis of the comb calibration images to generate the warp correction that is then applied to the data images. Our algorithm utilizes the method of thin-plate splines (TPS) to model the complex nonlinear distortions in the streak camera data. In this paper, we focus on the theory and implementation of the TPS warp-correction algorithm for the use in a production environment.

A nonlinear lag correction algorithm for a-Si flat-panel x-ray detectors

PubMed Central

Starman, Jared; Star-Lack, Josh; Virshup, Gary; Shapiro, Edward; Fahrig, Rebecca

2012-01-01

Purpose: Detector lag, or residual signal, in a-Si flat-panel (FP) detectors can cause significant shading artifacts in cone-beam computed tomography reconstructions. To date, most correction models have assumed a linear, time-invariant (LTI) model and correct lag by deconvolution with an impulse response function (IRF). However, the lag correction is sensitive to both the exposure intensity and the technique used for determining the IRF. Even when the LTI correction that produces the minimum error is found, residual artifact remains. A new non-LTI method was developed to take into account the IRF measurement technique and exposure dependencies. Methods: First, a multiexponential (N = 4) LTI model was implemented for lag correction. Next, a non-LTI lag correction, known as the nonlinear consistent stored charge (NLCSC) method, was developed based on the LTI multiexponential method. It differs from other nonlinear lag correction algorithms in that it maintains a consistent estimate of the amount of charge stored in the FP and it does not require intimate knowledge of the semiconductor parameters specific to the FP. For the NLCSC method, all coefficients of the IRF are functions of exposure intensity. Another nonlinear lag correction method that only used an intensity weighting of the IRF was also compared. The correction algorithms were applied to step-response projection data and CT acquisitions of a large pelvic phantom and an acrylic head phantom. The authors collected rising and falling edge step-response data on a Varian 4030CB a-Si FP detector operating in dynamic gain mode at 15 fps at nine incident exposures (2.0%–92% of the detector saturation exposure). For projection data, 1st and 50th frame lag were measured before and after correction. For the CT reconstructions, five pairs of ROIs were defined and the maximum and mean signal differences within a pair were calculated for the different exposures and step-response edge techniques. Results: The LTI corrections left residual 1st and 50th frame lag up to 1.4% and 0.48%, while the NLCSC lag correction reduced 1st and 50th frame residual lags to less than 0.29% and 0.0052%. For CT reconstructions, the NLCSC lag correction gave an average error of 11 HU for the pelvic phantom and 3 HU for the head phantom, compared to 14–19 HU and 2–11 HU for the LTI corrections and 15 HU and 9 HU for the intensity weighted non-LTI algorithm. The maximum ROI error was always smallest for the NLCSC correction. The NLCSC correction was also superior to the intensity weighting algorithm. Conclusions: The NLCSC lag algorithm corrected for the exposure dependence of lag, provided superior image improvement for the pelvic phantom reconstruction, and gave similar results to the best case LTI results for the head phantom. The blurred ring artifact that is left over in the LTI corrections was better removed by the NLCSC correction in all cases. PMID:23039642

Evaluation of atmospheric correction algorithms for processing SeaWiFS data

NASA Astrophysics Data System (ADS)

Ransibrahmanakul, Varis; Stumpf, Richard; Ramachandran, Sathyadev; Hughes, Kent

2005-08-01

To enable the production of the best chlorophyll products from SeaWiFS data NOAA (Coastwatch and NOS) evaluated the various atmospheric correction algorithms by comparing the satellite derived water reflectance derived for each algorithm with in situ data. Gordon and Wang (1994) introduced a method to correct for Rayleigh and aerosol scattering in the atmosphere so that water reflectance may be derived from the radiance measured at the top of the atmosphere. However, since the correction assumed near infrared scattering to be negligible in coastal waters an invalid assumption, the method over estimates the atmospheric contribution and consequently under estimates water reflectance for the lower wavelength bands on extrapolation. Several improved methods to estimate near infrared correction exist: Siegel et al. (2000); Ruddick et al. (2000); Stumpf et al. (2002) and Stumpf et al. (2003), where an absorbing aerosol correction is also applied along with an additional 1.01% calibration adjustment for the 412 nm band. The evaluation show that the near infrared correction developed by Stumpf et al. (2003) result in an overall minimum error for U.S. waters. As of July 2004, NASA (SEADAS) has selected this as the default method for the atmospheric correction used to produce chlorophyll products.

Automated general temperature correction method for dielectric soil moisture sensors

NASA Astrophysics Data System (ADS)

Kapilaratne, R. G. C. Jeewantinie; Lu, Minjiao

2017-08-01

An effective temperature correction method for dielectric sensors is important to ensure the accuracy of soil water content (SWC) measurements of local to regional-scale soil moisture monitoring networks. These networks are extensively using highly temperature sensitive dielectric sensors due to their low cost, ease of use and less power consumption. Yet there is no general temperature correction method for dielectric sensors, instead sensor or site dependent correction algorithms are employed. Such methods become ineffective at soil moisture monitoring networks with different sensor setups and those that cover diverse climatic conditions and soil types. This study attempted to develop a general temperature correction method for dielectric sensors which can be commonly used regardless of the differences in sensor type, climatic conditions and soil type without rainfall data. In this work an automated general temperature correction method was developed by adopting previously developed temperature correction algorithms using time domain reflectometry (TDR) measurements to ThetaProbe ML2X, Stevens Hydra probe II and Decagon Devices EC-TM sensor measurements. The rainy day effects removal procedure from SWC data was automated by incorporating a statistical inference technique with temperature correction algorithms. The temperature correction method was evaluated using 34 stations from the International Soil Moisture Monitoring Network and another nine stations from a local soil moisture monitoring network in Mongolia. Soil moisture monitoring networks used in this study cover four major climates and six major soil types. Results indicated that the automated temperature correction algorithms developed in this study can eliminate temperature effects from dielectric sensor measurements successfully even without on-site rainfall data. Furthermore, it has been found that actual daily average of SWC has been changed due to temperature effects of dielectric sensors with a significant error factor comparable to ±1% manufacturer's accuracy.

Assessment of a bidirectional reflectance distribution correction of above-water and satellite water-leaving radiance in coastal waters.

PubMed

Hlaing, Soe; Gilerson, Alexander; Harmel, Tristan; Tonizzo, Alberto; Weidemann, Alan; Arnone, Robert; Ahmed, Samir

2012-01-10

Water-leaving radiances, retrieved from in situ or satellite measurements, need to be corrected for the bidirectional properties of the measured light in order to standardize the data and make them comparable with each other. The current operational algorithm for the correction of bidirectional effects from the satellite ocean color data is optimized for typical oceanic waters. However, versions of bidirectional reflectance correction algorithms specifically tuned for typical coastal waters and other case 2 conditions are particularly needed to improve the overall quality of those data. In order to analyze the bidirectional reflectance distribution function (BRDF) of case 2 waters, a dataset of typical remote sensing reflectances was generated through radiative transfer simulations for a large range of viewing and illumination geometries. Based on this simulated dataset, a case 2 water focused remote sensing reflectance model is proposed to correct above-water and satellite water-leaving radiance data for bidirectional effects. The proposed model is first validated with a one year time series of in situ above-water measurements acquired by collocated multispectral and hyperspectral radiometers, which have different viewing geometries installed at the Long Island Sound Coastal Observatory (LISCO). Match-ups and intercomparisons performed on these concurrent measurements show that the proposed algorithm outperforms the algorithm currently in use at all wavelengths, with average improvement of 2.4% over the spectral range. LISCO's time series data have also been used to evaluate improvements in match-up comparisons of Moderate Resolution Imaging Spectroradiometer satellite data when the proposed BRDF correction is used in lieu of the current algorithm. It is shown that the discrepancies between coincident in-situ sea-based and satellite data decreased by 3.15% with the use of the proposed algorithm. This confirms the advantages of the proposed model over the current one, demonstrating the need for a specific case 2 water BRDF correction algorithm as well as the feasibility of enhancing performance of current and future satellite ocean color remote sensing missions for monitoring of typical coastal waters. © 2012 Optical Society of America

Potassium-based algorithm allows correction for the hematocrit bias in quantitative analysis of caffeine and its major metabolite in dried blood spots.

PubMed

De Kesel, Pieter M M; Capiau, Sara; Stove, Veronique V; Lambert, Willy E; Stove, Christophe P

2014-10-01

Although dried blood spot (DBS) sampling is increasingly receiving interest as a potential alternative to traditional blood sampling, the impact of hematocrit (Hct) on DBS results is limiting its final breakthrough in routine bioanalysis. To predict the Hct of a given DBS, potassium (K(+)) proved to be a reliable marker. The aim of this study was to evaluate whether application of an algorithm, based upon predicted Hct or K(+) concentrations as such, allowed correction for the Hct bias. Using validated LC-MS/MS methods, caffeine, chosen as a model compound, was determined in whole blood and corresponding DBS samples with a broad Hct range (0.18-0.47). A reference subset (n = 50) was used to generate an algorithm based on K(+) concentrations in DBS. Application of the developed algorithm on an independent test set (n = 50) alleviated the assay bias, especially at lower Hct values. Before correction, differences between DBS and whole blood concentrations ranged from -29.1 to 21.1%. The mean difference, as obtained by Bland-Altman comparison, was -6.6% (95% confidence interval (CI), -9.7 to -3.4%). After application of the algorithm, differences between corrected and whole blood concentrations lay between -19.9 and 13.9% with a mean difference of -2.1% (95% CI, -4.5 to 0.3%). The same algorithm was applied to a separate compound, paraxanthine, which was determined in 103 samples (Hct range, 0.17-0.47), yielding similar results. In conclusion, a K(+)-based algorithm allows correction for the Hct bias in the quantitative analysis of caffeine and its metabolite paraxanthine.

An empirical method to correct for temperature-dependent variations in the overlap function of CHM15k ceilometers

NASA Astrophysics Data System (ADS)

Hervo, Maxime; Poltera, Yann; Haefele, Alexander

2016-07-01

Imperfections in a lidar's overlap function lead to artefacts in the background, range and overlap-corrected lidar signals. These artefacts can erroneously be interpreted as an aerosol gradient or, in extreme cases, as a cloud base leading to false cloud detection. A correct specification of the overlap function is hence crucial in the use of automatic elastic lidars (ceilometers) for the detection of the planetary boundary layer or of low cloud. In this study, an algorithm is presented to correct such artefacts. It is based on the assumption of a homogeneous boundary layer and a correct specification of the overlap function down to a minimum range, which must be situated within the boundary layer. The strength of the algorithm lies in a sophisticated quality-check scheme which allows the reliable identification of favourable atmospheric conditions. The algorithm was applied to 2 years of data from a CHM15k ceilometer from the company Lufft. Backscatter signals corrected for background, range and overlap were compared using the overlap function provided by the manufacturer and the one corrected with the presented algorithm. Differences between corrected and uncorrected signals reached up to 45 % in the first 300 m above ground. The amplitude of the correction turned out to be temperature dependent and was larger for higher temperatures. A linear model of the correction as a function of the instrument's internal temperature was derived from the experimental data. Case studies and a statistical analysis of the strongest gradient derived from corrected signals reveal that the temperature model is capable of a high-quality correction of overlap artefacts, in particular those due to diurnal variations. The presented correction method has the potential to significantly improve the detection of the boundary layer with gradient-based methods because it removes false candidates and hence simplifies the attribution of the detected gradients to the planetary boundary layer. A particularly significant benefit can be expected for the detection of shallow stable layers typical of night-time situations. The algorithm is completely automatic and does not require any on-site intervention but requires the definition of an adequate instrument-specific configuration. It is therefore suited for use in large ceilometer networks.

2D-RBUC for efficient parallel compression of residuals

NASA Astrophysics Data System (ADS)

Đurđević, Đorđe M.; Tartalja, Igor I.

2018-02-01

In this paper, we present a method for lossless compression of residuals with an efficient SIMD parallel decompression. The residuals originate from lossy or near lossless compression of height fields, which are commonly used to represent models of terrains. The algorithm is founded on the existing RBUC method for compression of non-uniform data sources. We have adapted the method to capture 2D spatial locality of height fields, and developed the data decompression algorithm for modern GPU architectures already present even in home computers. In combination with the point-level SIMD-parallel lossless/lossy high field compression method HFPaC, characterized by fast progressive decompression and seamlessly reconstructed surface, the newly proposed method trades off small efficiency degradation for a non negligible compression ratio (measured up to 91%) benefit.

Correction of WindScat Scatterometric Measurements by Combining with AMSR Radiometric Data

NASA Technical Reports Server (NTRS)

Song, S.; Moore, R. K.

1996-01-01

The Seawinds scatterometer on the advanced Earth observing satellite-2 (ADEOS-2) will determine surface wind vectors by measuring the radar cross section. Multiple measurements will be made at different points in a wind-vector cell. When dense clouds and rain are present, the signal will be attenuated, thereby giving erroneous results for the wind. This report describes algorithms to use with the advanced mechanically scanned radiometer (AMSR) scanning radiometer on ADEOS-2 to correct for the attenuation. One can determine attenuation from a radiometer measurement based on the excess brightness temperature measured. This is the difference between the total measured brightness temperature and the contribution from surface emission. A major problem that the algorithm must address is determining the surface contribution. Two basic approaches were developed for this, one using the scattering coefficient measured along with the brightness temperature, and the other using the brightness temperature alone. For both methods, best results will occur if the wind from the preceding wind-vector cell can be used as an input to the algorithm. In the method based on the scattering coefficient, we need the wind direction from the preceding cell. In the method using brightness temperature alone, we need the wind speed from the preceding cell. If neither is available, the algorithm can work, but the corrections will be less accurate. Both correction methods require iterative solutions. Simulations show that the algorithms make significant improvements in the measured scattering coefficient and thus is the retrieved wind vector. For stratiform rains, the errors without correction can be quite large, so the correction makes a major improvement. For systems of separated convective cells, the initial error is smaller and the correction, although about the same percentage, has a smaller effect.

a Review on State-Of Face Recognition Approaches

NASA Astrophysics Data System (ADS)

Mahmood, Zahid; Muhammad, Nazeer; Bibi, Nargis; Ali, Tauseef

Automatic Face Recognition (FR) presents a challenging task in the field of pattern recognition and despite the huge research in the past several decades; it still remains an open research problem. This is primarily due to the variability in the facial images, such as non-uniform illuminations, low resolution, occlusion, and/or variation in poses. Due to its non-intrusive nature, the FR is an attractive biometric modality and has gained a lot of attention in the biometric research community. Driven by the enormous number of potential application domains, many algorithms have been proposed for the FR. This paper presents an overview of the state-of-the-art FR algorithms, focusing their performances on publicly available databases. We highlight the conditions of the image databases with regard to the recognition rate of each approach. This is useful as a quick research overview and for practitioners as well to choose an algorithm for their specified FR application. To provide a comprehensive survey, the paper divides the FR algorithms into three categories: (1) intensity-based, (2) video-based, and (3) 3D based FR algorithms. In each category, the most commonly used algorithms and their performance is reported on standard face databases and a brief critical discussion is carried out.

NBS: Nondestructive evaluation of nonuniformities in 2219 aluminum alloy plate: Relationship to processing

NASA Technical Reports Server (NTRS)

Swartzendruber, L.; Boettinger, W.; Ives, L.; Coriell, S.; Ballard, D.; Laughlin, D.; Clough, R.; Biancanieilo, F.; Blau, P.; Cahn, J.

1980-01-01

The compositional homogeneity, microstructure, hardness, electrical conductivity and mechanical properties of 2219 aluminum alloy plates are influenced by the process variables during casting, rolling and thermomechanical treatment. The details of these relationships wre investigated for correctly processed 2219 plate as well as for deviations caused by improper quenching after solution heat treatment. Primary emphasis was been placed on the reliability of eddy current electrical conductivity and hardness as NDE tools to detect variations in mechanical properties.

An Indium Gallium Arsenide Visible/SWIR Focal Plane Array for Low Light Level Imaging

DTIC Science & Technology

1999-08-01

Abstract unclassified Limitation of Abstract unlimited Number of Pages 13 1.0 INTRODUCTION Military uses for the long-wave infrared ( LWIR ) and mid...applications.1,2 There are many military imaging applications becoming apparent in the SWIR band that are not possible in the MWIR or LWIR . Some of the...image is of the raw, uncorrected video output. The dark current has not been subtracted not has any gain nonuniformity been corrected. In the image of

Small Business Innovation Research (SBIR) Program, FY 1993. Program Solicitation 93.1, Closing Date: 15 January 1993

DTIC Science & Technology

1992-01-01

tactical computers. The module must correct for optical irregularities in illumination, pixel gain, offset nonuniformities due to dark currents and...large search FOR, for IR FPA. DESCRIPTION: Large area staring IR lPAs in both Medium Wavelength Infrared (MWIR) and Long Wavelength Infrared ( LWIR ) are a...of HTS materials to BLIP limited detection of radiation in the optical, IR, MWIR, and LWIR bands as well as for signal processing applications is also

Signal chain for the Airborne Visible/Infrared Imaging Spectrometer (AVIRIS)

NASA Technical Reports Server (NTRS)

Bunn, James S., Jr.

1988-01-01

The AVIRIS instrument has a separate dedicated analog signal processing chain for each of its four spectrometers. The signal chains amplify low-level focal-plane line array signals (5 to 10 mV full-scale span) in the presence of larger multiplexing signals (approx 150 mV) providing the data handling system a ten-bit digital word (for each spectrometer) each 1.3 microns. This signal chain provides automatic correction for the line array dark signal nonuniformity (which can approach the full-scale signal span).

Signal chain for the Airborne Visible/Infrared Imaging Spectrometer (AVIRIS)

NASA Technical Reports Server (NTRS)

Bunn, James S., Jr.

1987-01-01

The AVIRIS instrument has a separate dedicated analog signal processing chain for each of its four spectrometers. The signal chains amplify low-level focal-plane line array signals (5 to 10 mV full-scale span) in the presence of larger multiplexing signals (approx 150 mV) providing the data handling system a ten-bit digital word (for each spectrometer) each 1.3 microns. This signal chain provides automatic correction for the line array dark signal nonuniformity (which can approach the full-scale signal span).

MO-FG-CAMPUS-IeP1-04: Kerma Area Product Calculation for Non-Uniform X-Ray Fields Using a Skin Dose Tracking System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vijayan, S; Xiong, Z; Rudin, S

Purpose: The functionality of the Dose-Tracking System (DTS) has been expanded to include the calculation of the Kerma-Area Product (KAP) for non-uniform x-ray fields such as result from the use of compensation filters during fluoroscopic procedures Methods: The DTS calculates skin dose during fluoroscopic interventions and provides a color-coded dose map on a patient-graphic model. The KAP is the integral of air kerma over the x-ray field and is usually measured with a transmission-ionization chamber that intercepts the entire x-ray beam. The DTS has been modified to determine KAP when there are beam non-uniformities that can be modeled. For example,more » the DTS includes models of the three compensation filters with tapered edges located in the collimator assembly of the Toshiba Infinix fluoroscopic C-Arm and can track their movement. To determine the air kerma after the filters, DTS includes transmission factors for the compensation filters as a function of kVp and beam filtration. A virtual KAP dosimeter is simulated in the DTS by an array of graphic vertices; the air kerma at each vertex is corrected by the field non-uniformity, which in this case is the attenuation factor for those rays which pass through the filter. The products of individual vertex air-kerma values for all vertices within the beam times the effective-area-per-vertex are summed for each x-ray pulse to yield the KAP per pulse and the cumulative KAP for the procedure is then calculated. Results: The KAP values estimated by DTS with the compensation filter inserted into the x-ray field agree within ± 6% with the values displayed on the fluoroscopy unit monitor, which are measured with a transmission chamber. Conclusion: The DTS can account for field non-uniformities such as result from the use of compensation filters in calculating KAP and can obviate the need for a KAP transmission ionization chamber. Partial support from NIH Grant R01-EB002873 and Toshiba Medical Systems Corp.« less

Modeling spanwise nonuniformity in the cross-sectional analysis of composite beams

NASA Astrophysics Data System (ADS)

Ho, Jimmy Cheng-Chung

Spanwise nonuniformity effects are modeled in the cross-sectional analysis of beam theory. This modeling adheres to an established numerical framework on cross-sectional analysis of uniform beams with arbitrary cross-sections. This framework is based on two concepts: decomposition of the rotation tensor and the variational-asymptotic method. Allowance of arbitrary materials and geometries in the cross-section is from discretization of the warping field by finite elements. By this approach, dimensional reduction from three-dimensional elasticity is performed rigorously and the sectional strain energy is derived to be asymptotically-correct. Elastic stiffness matrices are derived for inputs into the global beam analysis. Recovery relations for the displacement, stress, and strain fields are also derived with care to be consistent with the energy. Spanwise nonuniformity effects appear in the form of pointwise and sectionwise derivatives, which are approximated by finite differences. The formulation also accounts for the effects of spanwise variations in initial twist and/or curvature. A linearly tapered isotropic strip is analyzed to demonstrate spanwise nonuniformity effects on the cross-sectional analysis. The analysis is performed analytically by the variational-asymptotic method. Results from beam theory are validated against solutions from plane stress elasticity. These results demonstrate that spanwise nonuniformity effects become significant as the rate at which the cross-sections vary increases. The modeling of transverse shear modes of deformation is accomplished by transforming the strain energy into generalized Timoshenko form. Approximations in this transformation procedure from previous works, when applied to uniform beams, are identified. The approximations are not used in the present work so as to retain more accuracy. Comparison of present results with those previously published shows that these approximations sometimes change the results measurably and thus are inappropriate. Static and dynamic results, from the global beam analysis, are calculated to show the differences between using stiffness constants from previous works and the present work. As a form of validation of the transformation procedure, calculations from the global beam analysis of initially twisted isotropic beams from using curvilinear coordinate axes featuring twist are shown to be equivalent to calculations using Cartesian coordinates.

Improved forest change detection with terrain illumination corrected landsat images

USDA-ARS?s Scientific Manuscript database

An illumination correction algorithm has been developed to improve the accuracy of forest change detection from Landsat reflectance data. This algorithm is based on an empirical rotation model and was tested on the Landsat imagery pair over Cherokee National Forest, Tennessee, Uinta-Wasatch-Cache N...

Mastery Multiplied

ERIC Educational Resources Information Center

Shumway, Jessica F.; Kyriopoulos, Joan

2014-01-01

Being able to find the correct answer to a math problem does not always indicate solid mathematics mastery. A student who knows how to apply the basic algorithms can correctly solve problems without understanding the relationships between numbers or why the algorithms work. The Common Core standards require that students actually understand…

Distributed Sensing and Shape Control of Piezoelectric Bimorph Mirrors

DOE Office of Scientific and Technical Information (OSTI.GOV)

Redmond, James M.; Barney, Patrick S.; Henson, Tammy D.

1999-07-28

As part of a collaborative effort between Sandia National Laboratories and the University of Kentucky to develop a deployable mirror for remote sensing applications, research in shape sensing and control algorithms that leverage the distributed nature of electron gun excitation for piezoelectric bimorph mirrors is summarized. A coarse shape sensing technique is developed that uses reflected light rays from the sample surface to provide discrete slope measurements. Estimates of surface profiles are obtained with a cubic spline curve fitting algorithm. Experiments on a PZT bimorph illustrate appropriate deformation trends as a function of excitation voltage. A parallel effort to effectmore » desired shape changes through electron gun excitation is also summarized. A one dimensional model-based algorithm is developed to correct profile errors in bimorph beams. A more useful two dimensional algorithm is also developed that relies on measured voltage-curvature sensitivities to provide corrective excitation profiles for the top and bottom surfaces of bimorph plates. The two algorithms are illustrated using finite element models of PZT bimorph structures subjected to arbitrary disturbances. Corrective excitation profiles that yield desired parabolic forms are computed, and are shown to provide the necessary corrective action.« less

A Parallel Decoding Algorithm for Short Polar Codes Based on Error Checking and Correcting

PubMed Central

Pan, Xiaofei; Pan, Kegang; Ye, Zhan; Gong, Chao

2014-01-01

We propose a parallel decoding algorithm based on error checking and correcting to improve the performance of the short polar codes. In order to enhance the error-correcting capacity of the decoding algorithm, we first derive the error-checking equations generated on the basis of the frozen nodes, and then we introduce the method to check the errors in the input nodes of the decoder by the solutions of these equations. In order to further correct those checked errors, we adopt the method of modifying the probability messages of the error nodes with constant values according to the maximization principle. Due to the existence of multiple solutions of the error-checking equations, we formulate a CRC-aided optimization problem of finding the optimal solution with three different target functions, so as to improve the accuracy of error checking. Besides, in order to increase the throughput of decoding, we use a parallel method based on the decoding tree to calculate probability messages of all the nodes in the decoder. Numerical results show that the proposed decoding algorithm achieves better performance than that of some existing decoding algorithms with the same code length. PMID:25540813

A 3D inversion for all-space magnetotelluric data with static shift correction

NASA Astrophysics Data System (ADS)

Zhang, Kun

2017-04-01

Base on the previous studies on the static shift correction and 3D inversion algorithms, we improve the NLCG 3D inversion method and propose a new static shift correction method which work in the inversion. The static shift correction method is based on the 3D theory and real data. The static shift can be detected by the quantitative analysis of apparent parameters (apparent resistivity and impedance phase) of MT in high frequency range, and completed correction with inversion. The method is an automatic processing technology of computer with 0 cost, and avoids the additional field work and indoor processing with good results. The 3D inversion algorithm is improved (Zhang et al., 2013) base on the NLCG method of Newman & Alumbaugh (2000) and Rodi & Mackie (2001). For the algorithm, we added the parallel structure, improved the computational efficiency, reduced the memory of computer and added the topographic and marine factors. So the 3D inversion could work in general PC with high efficiency and accuracy. And all the MT data of surface stations, seabed stations and underground stations can be used in the inversion algorithm.

Optimizing wavefront-guided corrections for highly aberrated eyes in the presence of registration uncertainty

PubMed Central

Shi, Yue; Queener, Hope M.; Marsack, Jason D.; Ravikumar, Ayeswarya; Bedell, Harold E.; Applegate, Raymond A.

2013-01-01

Dynamic registration uncertainty of a wavefront-guided correction with respect to underlying wavefront error (WFE) inevitably decreases retinal image quality. A partial correction may improve average retinal image quality and visual acuity in the presence of registration uncertainties. The purpose of this paper is to (a) develop an algorithm to optimize wavefront-guided correction that improves visual acuity given registration uncertainty and (b) test the hypothesis that these corrections provide improved visual performance in the presence of these uncertainties as compared to a full-magnitude correction or a correction by Guirao, Cox, and Williams (2002). A stochastic parallel gradient descent (SPGD) algorithm was used to optimize the partial-magnitude correction for three keratoconic eyes based on measured scleral contact lens movement. Given its high correlation with logMAR acuity, the retinal image quality metric log visual Strehl was used as a predictor of visual acuity. Predicted values of visual acuity with the optimized corrections were validated by regressing measured acuity loss against predicted loss. Measured loss was obtained from normal subjects viewing acuity charts that were degraded by the residual aberrations generated by the movement of the full-magnitude correction, the correction by Guirao, and optimized SPGD correction. Partial-magnitude corrections optimized with an SPGD algorithm provide at least one line improvement of average visual acuity over the full magnitude and the correction by Guirao given the registration uncertainty. This study demonstrates that it is possible to improve the average visual acuity by optimizing wavefront-guided correction in the presence of registration uncertainty. PMID:23757512

Coastal Zone Color Scanner atmospheric correction - Influence of El Chichon

NASA Technical Reports Server (NTRS)

Gordon, Howard R.; Castano, Diego J.

1988-01-01

The addition of an El Chichon-like aerosol layer in the stratosphere is shown to have very little effect on the basic CZCS atmospheric correction algorithm. The additional stratospheric aerosol is found to increase the total radiance exiting the atmosphere, thereby increasing the probability that the sensor will saturate. It is suggested that in the absence of saturation the correction algorithm should perform as well as in the absence of the stratospheric layer.

Fast readout algorithm for cylindrical beam position monitors providing good accuracy for particle bunches with large offsets

NASA Astrophysics Data System (ADS)

Thieberger, P.; Gassner, D.; Hulsart, R.; Michnoff, R.; Miller, T.; Minty, M.; Sorrell, Z.; Bartnik, A.

2018-04-01

A simple, analytically correct algorithm is developed for calculating "pencil" relativistic beam coordinates using the signals from an ideal cylindrical particle beam position monitor (BPM) with four pickup electrodes (PUEs) of infinitesimal widths. The algorithm is then applied to simulations of realistic BPMs with finite width PUEs. Surprisingly small deviations are found. Simple empirically determined correction terms reduce the deviations even further. The algorithm is then tested with simulations for non-relativistic beams. As an example of the data acquisition speed advantage, a Field Programmable Gate Array-based BPM readout implementation of the new algorithm has been developed and characterized. Finally, the algorithm is tested with BPM data from the Cornell Preinjector.

Fast readout algorithm for cylindrical beam position monitors providing good accuracy for particle bunches with large offsets

DOE PAGES

Thieberger, Peter; Gassner, D.; Hulsart, R.; ...

2018-04-25

Here, a simple, analytically correct algorithm is developed for calculating “pencil” relativistic beam coordinates using the signals from an ideal cylindrical particle beam position monitor (BPM) with four pickup electrodes (PUEs) of infinitesimal widths. The algorithm is then applied to simulations of realistic BPMs with finite width PUEs. Surprisingly small deviations are found. Simple empirically determined correction terms reduce the deviations even further. The algorithm is then tested with simulations for non-relativistic beams. As an example of the data acquisition speed advantage, a FPGA-based BPM readout implementation of the new algorithm has been developed and characterized. Lastly, the algorithm ismore » tested with BPM data from the Cornell Preinjector.« less

Fast readout algorithm for cylindrical beam position monitors providing good accuracy for particle bunches with large offsets

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thieberger, Peter; Gassner, D.; Hulsart, R.

Here, a simple, analytically correct algorithm is developed for calculating “pencil” relativistic beam coordinates using the signals from an ideal cylindrical particle beam position monitor (BPM) with four pickup electrodes (PUEs) of infinitesimal widths. The algorithm is then applied to simulations of realistic BPMs with finite width PUEs. Surprisingly small deviations are found. Simple empirically determined correction terms reduce the deviations even further. The algorithm is then tested with simulations for non-relativistic beams. As an example of the data acquisition speed advantage, a FPGA-based BPM readout implementation of the new algorithm has been developed and characterized. Lastly, the algorithm ismore » tested with BPM data from the Cornell Preinjector.« less

Fast readout algorithm for cylindrical beam position monitors providing good accuracy for particle bunches with large offsets.

PubMed

Thieberger, P; Gassner, D; Hulsart, R; Michnoff, R; Miller, T; Minty, M; Sorrell, Z; Bartnik, A

2018-04-01

A simple, analytically correct algorithm is developed for calculating "pencil" relativistic beam coordinates using the signals from an ideal cylindrical particle beam position monitor (BPM) with four pickup electrodes (PUEs) of infinitesimal widths. The algorithm is then applied to simulations of realistic BPMs with finite width PUEs. Surprisingly small deviations are found. Simple empirically determined correction terms reduce the deviations even further. The algorithm is then tested with simulations for non-relativistic beams. As an example of the data acquisition speed advantage, a Field Programmable Gate Array-based BPM readout implementation of the new algorithm has been developed and characterized. Finally, the algorithm is tested with BPM data from the Cornell Preinjector.

The atmospheric correction algorithm for HY-1B/COCTS

NASA Astrophysics Data System (ADS)

He, Xianqiang; Bai, Yan; Pan, Delu; Zhu, Qiankun

2008-10-01

China has launched her second ocean color satellite HY-1B on 11 Apr., 2007, which carried two remote sensors. The Chinese Ocean Color and Temperature Scanner (COCTS) is the main sensor on HY-1B, and it has not only eight visible and near-infrared wavelength bands similar to the SeaWiFS, but also two more thermal infrared bands to measure the sea surface temperature. Therefore, COCTS has broad application potentiality, such as fishery resource protection and development, coastal monitoring and management and marine pollution monitoring. Atmospheric correction is the key of the quantitative ocean color remote sensing. In this paper, the operational atmospheric correction algorithm of HY-1B/COCTS has been developed. Firstly, based on the vector radiative transfer numerical model of coupled oceanatmosphere system- PCOART, the exact Rayleigh scattering look-up table (LUT), aerosol scattering LUT and atmosphere diffuse transmission LUT for HY-1B/COCTS have been generated. Secondly, using the generated LUTs, the exactly operational atmospheric correction algorithm for HY-1B/COCTS has been developed. The algorithm has been validated using the simulated spectral data generated by PCOART, and the result shows the error of the water-leaving reflectance retrieved by this algorithm is less than 0.0005, which meets the requirement of the exactly atmospheric correction of ocean color remote sensing. Finally, the algorithm has been applied to the HY-1B/COCTS remote sensing data, and the retrieved water-leaving radiances are consist with the Aqua/MODIS results, and the corresponding ocean color remote sensing products have been generated including the chlorophyll concentration and total suspended particle matter concentration.

See Something, Say Something: Correction of Global Health Misinformation on Social Media.

PubMed

Bode, Leticia; Vraga, Emily K

2018-09-01

Social media are often criticized for being a conduit for misinformation on global health issues, but may also serve as a corrective to false information. To investigate this possibility, an experiment was conducted exposing users to a simulated Facebook News Feed featuring misinformation and different correction mechanisms (one in which news stories featuring correct information were produced by an algorithm and another where the corrective news stories were posted by other Facebook users) about the Zika virus, a current global health threat. Results show that algorithmic and social corrections are equally effective in limiting misperceptions, and correction occurs for both high and low conspiracy belief individuals. Recommendations for social media campaigns to correct global health misinformation, including encouraging users to refute false or misleading health information, and providing them appropriate sources to accompany their refutation, are discussed.

[Method of correcting sensitivity nonuniformity using gaussian distribution on 3.0 Tesla abdominal MRI].

PubMed

Hayashi, Norio; Miyati, Tosiaki; Takanaga, Masako; Ohno, Naoki; Hamaguchi, Takashi; Kozaka, Kazuto; Sanada, Shigeru; Yamamoto, Tomoyuki; Matsui, Osamu

2011-01-01

In the direction where the phased array coil used in parallel magnetic resonance imaging (MRI) is perpendicular to the arrangement, sensitivity falls significantly. Moreover, in a 3.0 tesla (3T) abdominal MRI, the quality of the image is reduced by changes in the relaxation time, reinforcement of the magnetic susceptibility effect, etc. In a 3T MRI, which has a high resonant frequency, the signal of the depths (central part) is reduced in the trunk part. SCIC, which is sensitivity correction processing, has inadequate correction processing, such as that edges are emphasized and the central part is corrected. Therefore, we used 3T with a Gaussian distribution. The uneven compensation processing for sensitivity of an abdomen MR image was considered. The correction processing consisted of the following methods. 1) The center of gravity of the domain of the human body in an abdomen MR image was calculated. 2) The correction coefficient map was created from the center of gravity using the Gaussian distribution. 3) The sensitivity correction image was created from the correction coefficient map and the original picture image. Using the Gaussian correction to process the image, the uniformity calculated using the NEMA method was improved significantly compared to the original image of a phantom. In a visual evaluation by radiologists, the uniformity was improved significantly using the Gaussian correction processing. Because of the homogeneous improvement of the abdomen image taken using 3T MRI, the Gaussian correction processing is considered to be a very useful technique.

FACET - a "Flexible Artifact Correction and Evaluation Toolbox" for concurrently recorded EEG/fMRI data.

PubMed

Glaser, Johann; Beisteiner, Roland; Bauer, Herbert; Fischmeister, Florian Ph S

2013-11-09

In concurrent EEG/fMRI recordings, EEG data are impaired by the fMRI gradient artifacts which exceed the EEG signal by several orders of magnitude. While several algorithms exist to correct the EEG data, these algorithms lack the flexibility to either leave out or add new steps. The here presented open-source MATLAB toolbox FACET is a modular toolbox for the fast and flexible correction and evaluation of imaging artifacts from concurrently recorded EEG datasets. It consists of an Analysis, a Correction and an Evaluation framework allowing the user to choose from different artifact correction methods with various pre- and post-processing steps to form flexible combinations. The quality of the chosen correction approach can then be evaluated and compared to different settings. FACET was evaluated on a dataset provided with the FMRIB plugin for EEGLAB using two different correction approaches: Averaged Artifact Subtraction (AAS, Allen et al., NeuroImage 12(2):230-239, 2000) and the FMRI Artifact Slice Template Removal (FASTR, Niazy et al., NeuroImage 28(3):720-737, 2005). Evaluation of the obtained results were compared to the FASTR algorithm implemented in the EEGLAB plugin FMRIB. No differences were found between the FACET implementation of FASTR and the original algorithm across all gradient artifact relevant performance indices. The FACET toolbox not only provides facilities for all three modalities: data analysis, artifact correction as well as evaluation and documentation of the results but it also offers an easily extendable framework for development and evaluation of new approaches.

FACET – a “Flexible Artifact Correction and Evaluation Toolbox” for concurrently recorded EEG/fMRI data

PubMed Central

2013-01-01

Background In concurrent EEG/fMRI recordings, EEG data are impaired by the fMRI gradient artifacts which exceed the EEG signal by several orders of magnitude. While several algorithms exist to correct the EEG data, these algorithms lack the flexibility to either leave out or add new steps. The here presented open-source MATLAB toolbox FACET is a modular toolbox for the fast and flexible correction and evaluation of imaging artifacts from concurrently recorded EEG datasets. It consists of an Analysis, a Correction and an Evaluation framework allowing the user to choose from different artifact correction methods with various pre- and post-processing steps to form flexible combinations. The quality of the chosen correction approach can then be evaluated and compared to different settings. Results FACET was evaluated on a dataset provided with the FMRIB plugin for EEGLAB using two different correction approaches: Averaged Artifact Subtraction (AAS, Allen et al., NeuroImage 12(2):230–239, 2000) and the FMRI Artifact Slice Template Removal (FASTR, Niazy et al., NeuroImage 28(3):720–737, 2005). Evaluation of the obtained results were compared to the FASTR algorithm implemented in the EEGLAB plugin FMRIB. No differences were found between the FACET implementation of FASTR and the original algorithm across all gradient artifact relevant performance indices. Conclusion The FACET toolbox not only provides facilities for all three modalities: data analysis, artifact correction as well as evaluation and documentation of the results but it also offers an easily extendable framework for development and evaluation of new approaches. PMID:24206927

Degree-of-Freedom Strengthened Cascade Array for DOD-DOA Estimation in MIMO Array Systems.

PubMed

Yao, Bobin; Dong, Zhi; Zhang, Weile; Wang, Wei; Wu, Qisheng

2018-05-14

In spatial spectrum estimation, difference co-array can provide extra degrees-of-freedom (DOFs) for promoting parameter identifiability and parameter estimation accuracy. For the sake of acquiring as more DOFs as possible with a given number of physical sensors, we herein design a novel sensor array geometry named cascade array. This structure is generated by systematically connecting a uniform linear array (ULA) and a non-uniform linear array, and can provide more DOFs than some exist array structures but less than the upper-bound indicated by minimum redundant array (MRA). We further apply this cascade array into multiple input multiple output (MIMO) array systems, and propose a novel joint direction of departure (DOD) and direction of arrival (DOA) estimation algorithm, which is based on a reduced-dimensional weighted subspace fitting technique. The algorithm is angle auto-paired and computationally efficient. Theoretical analysis and numerical simulations prove the advantages and effectiveness of the proposed array structure and the related algorithm.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bassi, Gabriele; Blednykh, Alexei; Smalyuk, Victor

A novel algorithm for self-consistent simulations of long-range wakefield effects has been developed and applied to the study of both longitudinal and transverse coupled-bunch instabilities at NSLS-II. The algorithm is implemented in the new parallel tracking code space (self-consistent parallel algorithm for collective effects) discussed in the paper. The code is applicable for accurate beam dynamics simulations in cases where both bunch-to-bunch and intrabunch motions need to be taken into account, such as chromatic head-tail effects on the coupled-bunch instability of a beam with a nonuniform filling pattern, or multibunch and single-bunch effects of a passive higher-harmonic cavity. The numericalmore » simulations have been compared with analytical studies. For a beam with an arbitrary filling pattern, intensity-dependent complex frequency shifts have been derived starting from a system of coupled Vlasov equations. The analytical formulas and numerical simulations confirm that the analysis is reduced to the formulation of an eigenvalue problem based on the known formulas of the complex frequency shifts for the uniform filling pattern case.« less

Simulation of subwavelength metallic gratings using a new implementation of the recursive convolution finite-difference time-domain algorithm.

PubMed

Banerjee, Saswatee; Hoshino, Tetsuya; Cole, James B

2008-08-01

We introduce a new implementation of the finite-difference time-domain (FDTD) algorithm with recursive convolution (RC) for first-order Drude metals. We implemented RC for both Maxwell's equations for light polarized in the plane of incidence (TM mode) and the wave equation for light polarized normal to the plane of incidence (TE mode). We computed the Drude parameters at each wavelength using the measured value of the dielectric constant as a function of the spatial and temporal discretization to ensure both the accuracy of the material model and algorithm stability. For the TE mode, where Maxwell's equations reduce to the wave equation (even in a region of nonuniform permittivity) we introduced a wave equation formulation of RC-FDTD. This greatly reduces the computational cost. We used our methods to compute the diffraction characteristics of metallic gratings in the visible wavelength band and compared our results with frequency-domain calculations.

Different types of maximum power point tracking techniques for renewable energy systems: A survey

NASA Astrophysics Data System (ADS)

Khan, Mohammad Junaid; Shukla, Praveen; Mustafa, Rashid; Chatterji, S.; Mathew, Lini

2016-03-01

Global demand for electricity is increasing while production of energy from fossil fuels is declining and therefore the obvious choice of the clean energy source that is abundant and could provide security for development future is energy from the sun. In this paper, the characteristic of the supply voltage of the photovoltaic generator is nonlinear and exhibits multiple peaks, including many local peaks and a global peak in non-uniform irradiance. To keep global peak, MPPT is the important component of photovoltaic systems. Although many review articles discussed conventional techniques such as P & O, incremental conductance, the correlation ripple control and very few attempts have been made with intelligent MPPT techniques. This document also discusses different algorithms based on fuzzy logic, Ant Colony Optimization, Genetic Algorithm, artificial neural networks, Particle Swarm Optimization Algorithm Firefly, Extremum seeking control method and hybrid methods applied to the monitoring of maximum value of power at point in systems of photovoltaic under changing conditions of irradiance.

Medical image registration by combining global and local information: a chain-type diffeomorphic demons algorithm.

PubMed

Liu, Xiaozheng; Yuan, Zhenming; Zhu, Junming; Xu, Dongrong

2013-12-07

The demons algorithm is a popular algorithm for non-rigid image registration because of its computational efficiency and simple implementation. The deformation forces of the classic demons algorithm were derived from image gradients by considering the deformation to decrease the intensity dissimilarity between images. However, the methods using the difference of image intensity for medical image registration are easily affected by image artifacts, such as image noise, non-uniform imaging and partial volume effects. The gradient magnitude image is constructed from the local information of an image, so the difference in a gradient magnitude image can be regarded as more reliable and robust for these artifacts. Then, registering medical images by considering the differences in both image intensity and gradient magnitude is a straightforward selection. In this paper, based on a diffeomorphic demons algorithm, we propose a chain-type diffeomorphic demons algorithm by combining the differences in both image intensity and gradient magnitude for medical image registration. Previous work had shown that the classic demons algorithm can be considered as an approximation of a second order gradient descent on the sum of the squared intensity differences. By optimizing the new dissimilarity criteria, we also present a set of new demons forces which were derived from the gradients of the image and gradient magnitude image. We show that, in controlled experiments, this advantage is confirmed, and yields a fast convergence.

Multivariate quantile mapping bias correction: an N-dimensional probability density function transform for climate model simulations of multiple variables

NASA Astrophysics Data System (ADS)

Cannon, Alex J.

2018-01-01

Most bias correction algorithms used in climatology, for example quantile mapping, are applied to univariate time series. They neglect the dependence between different variables. Those that are multivariate often correct only limited measures of joint dependence, such as Pearson or Spearman rank correlation. Here, an image processing technique designed to transfer colour information from one image to another—the N-dimensional probability density function transform—is adapted for use as a multivariate bias correction algorithm (MBCn) for climate model projections/predictions of multiple climate variables. MBCn is a multivariate generalization of quantile mapping that transfers all aspects of an observed continuous multivariate distribution to the corresponding multivariate distribution of variables from a climate model. When applied to climate model projections, changes in quantiles of each variable between the historical and projection period are also preserved. The MBCn algorithm is demonstrated on three case studies. First, the method is applied to an image processing example with characteristics that mimic a climate projection problem. Second, MBCn is used to correct a suite of 3-hourly surface meteorological variables from the Canadian Centre for Climate Modelling and Analysis Regional Climate Model (CanRCM4) across a North American domain. Components of the Canadian Forest Fire Weather Index (FWI) System, a complicated set of multivariate indices that characterizes the risk of wildfire, are then calculated and verified against observed values. Third, MBCn is used to correct biases in the spatial dependence structure of CanRCM4 precipitation fields. Results are compared against a univariate quantile mapping algorithm, which neglects the dependence between variables, and two multivariate bias correction algorithms, each of which corrects a different form of inter-variable correlation structure. MBCn outperforms these alternatives, often by a large margin, particularly for annual maxima of the FWI distribution and spatiotemporal autocorrelation of precipitation fields.

Design and optimization of all-optical networks

NASA Astrophysics Data System (ADS)

Xiao, Gaoxi

1999-10-01

In this thesis, we present our research results on the design and optimization of all-optical networks. We divide our results into the following four parts: 1.In the first part, we consider broadcast-and-select networks. In our research, we propose an alternative and cheaper network configuration to hide the tuning time. In addition, we derive lower bounds on the optimal schedule lengths and prove that they are tighter than the best existing bounds. 2.In the second part, we consider all-optical wide area networks. We propose a set of algorithms for allocating a given number of WCs to the nodes. We adopt a simulation-based optimization approach, in which we collect utilization statistics of WCs from computer simulation and then perform optimization to allocate the WCs. Therefore, our algorithms are widely applicable and they are not restricted to any particular model and assumption. We have conducted extensive computer simulation on regular and irregular networks under both uniform and non-uniform traffic. We see that our method can get nearly the same performance as that of full wavelength conversion by using a much smaller number of WCs. Compared with the best existing method, the results show that our algorithms can significantly reduce (1)the overall blocking probability (i.e., better mean quality of service) and (2)the maximum of the blocking probabilities experienced at all the source nodes (i.e., better fairness). Equivalently, for a given performance requirement on blocking probability, our algorithms can significantly reduce the number of WCs required. 3.In the third part, we design and optimize the physical topology of all-optical wide area networks. We show that the design problem is NP-complete and we propose a heuristic algorithm called two-stage cut saturation algorithm for this problem. Simulation results show that (1)the proposed algorithm can efficiently design networks with low cost and high utilization, and (2)if wavelength converters are available to support full wavelength conversion, the cost of the links can be significantly reduced. 4.In the fourth part, we consider all-optical wide area networks with multiple fibers per link. We design a node configuration for all-optical networks. We exploit the flexibility that, to establish a lightpath across a node, we can select any one of the available channels in the incoming link and any one of the available channels in the outgoing link. As a result, the proposed node configuration requires a small number of small optical switches while it can achieve nearly the same performance as the existing one. And there is no additional crosstalk other than the intrinsic crosstalk within each single-chip optical switch.* (Abstract shortened by UMI.) *Originally published in DAI Vol. 60, No. 2. Reprinted here with corrected author name.

Beam hardening correction in CT myocardial perfusion measurement

NASA Astrophysics Data System (ADS)

So, Aaron; Hsieh, Jiang; Li, Jian-Ying; Lee, Ting-Yim

2009-05-01

This paper presents a method for correcting beam hardening (BH) in cardiac CT perfusion imaging. The proposed algorithm works with reconstructed images instead of projection data. It applies thresholds to separate low (soft tissue) and high (bone and contrast) attenuating material in a CT image. The BH error in each projection is estimated by a polynomial function of the forward projection of the segmented image. The error image is reconstructed by back-projection of the estimated errors. A BH-corrected image is then obtained by subtracting a scaled error image from the original image. Phantoms were designed to simulate the BH artifacts encountered in cardiac CT perfusion studies of humans and animals that are most commonly used in cardiac research. These phantoms were used to investigate whether BH artifacts can be reduced with our approach and to determine the optimal settings, which depend upon the anatomy of the scanned subject, of the correction algorithm for patient and animal studies. The correction algorithm was also applied to correct BH in a clinical study to further demonstrate the effectiveness of our technique.

A method of measuring and correcting tilt of anti - vibration wind turbines based on screening algorithm

NASA Astrophysics Data System (ADS)

Xiao, Zhongxiu

2018-04-01

A Method of Measuring and Correcting Tilt of Anti - vibration Wind Turbines Based on Screening Algorithm is proposed in this paper. First of all, we design a device which the core is the acceleration sensor ADXL203, the inclination is measured by installing it on the tower of the wind turbine as well as the engine room. Next using the Kalman filter algorithm to filter effectively by establishing a state space model for signal and noise. Then we use matlab for simulation. Considering the impact of the tower and nacelle vibration on the collected data, the original data and the filtering data are classified and stored by the Screening algorithm, then filter the filtering data to make the output data more accurate. Finally, we eliminate installation errors by using algorithm to achieve the tilt correction. The device based on this method has high precision, low cost and anti-vibration advantages. It has a wide range of application and promotion value.

Analysis of L-band Multi-Channel Sea Clutter

DTIC Science & Technology

2010-08-01

Some researchers found that the use of a hybrid algorithm of PS and GA could accelerate the convergence for array beamforming designs (Yeo and Lu...to be shown is array failure correction using the PS algorithm . Assume element 5 of a 32 half-wavelength spacing linear array is in failure. The goal... algorithm . The blue one is the 20 dB Chebyshev pattern and the template in red is the goal pattern to achieve. Two corrected beam patterns are

A Novel Grid SINS/DVL Integrated Navigation Algorithm for Marine Application

PubMed Central

Kang, Yingyao; Zhao, Lin; Cheng, Jianhua; Fan, Xiaoliang

2018-01-01

Integrated navigation algorithms under the grid frame have been proposed based on the Kalman filter (KF) to solve the problem of navigation in some special regions. However, in the existing study of grid strapdown inertial navigation system (SINS)/Doppler velocity log (DVL) integrated navigation algorithms, the Earth models of the filter dynamic model and the SINS mechanization are not unified. Besides, traditional integrated systems with the KF based correction scheme are susceptible to measurement errors, which would decrease the accuracy and robustness of the system. In this paper, an adaptive robust Kalman filter (ARKF) based hybrid-correction grid SINS/DVL integrated navigation algorithm is designed with the unified reference ellipsoid Earth model to improve the navigation accuracy in middle-high latitude regions for marine application. Firstly, to unify the Earth models, the mechanization of grid SINS is introduced and the error equations are derived based on the same reference ellipsoid Earth model. Then, a more accurate grid SINS/DVL filter model is designed according to the new error equations. Finally, a hybrid-correction scheme based on the ARKF is proposed to resist the effect of measurement errors. Simulation and experiment results show that, compared with the traditional algorithms, the proposed navigation algorithm can effectively improve the navigation performance in middle-high latitude regions by the unified Earth models and the ARKF based hybrid-correction scheme. PMID:29373549

High-order flux correction/finite difference schemes for strand grids

NASA Astrophysics Data System (ADS)

Katz, Aaron; Work, Dalon

2015-02-01

A novel high-order method combining unstructured flux correction along body surfaces and high-order finite differences normal to surfaces is formulated for unsteady viscous flows on strand grids. The flux correction algorithm is applied in each unstructured layer of the strand grid, and the layers are then coupled together via a source term containing derivatives in the strand direction. Strand-direction derivatives are approximated to high-order via summation-by-parts operators for first derivatives and second derivatives with variable coefficients. We show how this procedure allows for the proper truncation error canceling properties required for the flux correction scheme. The resulting scheme possesses third-order design accuracy, but often exhibits fourth-order accuracy when higher-order derivatives are employed in the strand direction, especially for highly viscous flows. We prove discrete conservation for the new scheme and time stability in the absence of the flux correction terms. Results in two dimensions are presented that demonstrate improvements in accuracy with minimal computational and algorithmic overhead over traditional second-order algorithms.

Comparison of atmospheric correction algorithms for the Coastal Zone Color Scanner

NASA Technical Reports Server (NTRS)

Tanis, F. J.; Jain, S. C.

1984-01-01

Before Nimbus-7 Costal Zone Color Scanner (CZC) data can be used to distinguish between coastal water types, methods must be developed for the removal of spatial variations in aerosol path radiance. These can dominate radiance measurements made by the satellite. An assessment is presently made of the ability of four different algorithms to quantitatively remove haze effects; each was adapted for the extraction of the required scene-dependent parameters during an initial pass through the data set The CZCS correction algorithms considered are (1) the Gordon (1981, 1983) algorithm; (2) the Smith and Wilson (1981) iterative algorityhm; (3) the pseudooptical depth method; and (4) the residual component algorithm.

A Robust In-Situ Warp-Correction Algorithm For VISAR Streak Camera Data at the National Ignition Facility

DOE Office of Scientific and Technical Information (OSTI.GOV)

Labaria, George R.; Warrick, Abbie L.; Celliers, Peter M.

2015-01-12

The National Ignition Facility (NIF) at the Lawrence Livermore National Laboratory is a 192-beam pulsed laser system for high-energy-density physics experiments. Sophisticated diagnostics have been designed around key performance metrics to achieve ignition. The Velocity Interferometer System for Any Reflector (VISAR) is the primary diagnostic for measuring the timing of shocks induced into an ignition capsule. The VISAR system utilizes three streak cameras; these streak cameras are inherently nonlinear and require warp corrections to remove these nonlinear effects. A detailed calibration procedure has been developed with National Security Technologies (NSTec) and applied to the camera correction analysis in production. However,more » the camera nonlinearities drift over time, affecting the performance of this method. An in-situ fiber array is used to inject a comb of pulses to generate a calibration correction in order to meet the timing accuracy requirements of VISAR. We develop a robust algorithm for the analysis of the comb calibration images to generate the warp correction that is then applied to the data images. Our algorithm utilizes the method of thin-plate splines (TPS) to model the complex nonlinear distortions in the streak camera data. In this paper, we focus on the theory and implementation of the TPS warp-correction algorithm for the use in a production environment.« less

A three-dimensional model-based partial volume correction strategy for gated cardiac mouse PET imaging

NASA Astrophysics Data System (ADS)

Dumouchel, Tyler; Thorn, Stephanie; Kordos, Myra; DaSilva, Jean; Beanlands, Rob S. B.; deKemp, Robert A.

2012-07-01

Quantification in cardiac mouse positron emission tomography (PET) imaging is limited by the imaging spatial resolution. Spillover of left ventricle (LV) myocardial activity into adjacent organs results in partial volume (PV) losses leading to underestimation of myocardial activity. A PV correction method was developed to restore accuracy of the activity distribution for FDG mouse imaging. The PV correction model was based on convolving an LV image estimate with a 3D point spread function. The LV model was described regionally by a five-parameter profile including myocardial, background and blood activities which were separated into three compartments by the endocardial radius and myocardium wall thickness. The PV correction was tested with digital simulations and a physical 3D mouse LV phantom. In vivo cardiac FDG mouse PET imaging was also performed. Following imaging, the mice were sacrificed and the tracer biodistribution in the LV and liver tissue was measured using a gamma-counter. The PV correction algorithm improved recovery from 50% to within 5% of the truth for the simulated and measured phantom data and image uniformity by 5-13%. The PV correction algorithm improved the mean myocardial LV recovery from 0.56 (0.54) to 1.13 (1.10) without (with) scatter and attenuation corrections. The mean image uniformity was improved from 26% (26%) to 17% (16%) without (with) scatter and attenuation corrections applied. Scatter and attenuation corrections were not observed to significantly impact PV-corrected myocardial recovery or image uniformity. Image-based PV correction algorithm can increase the accuracy of PET image activity and improve the uniformity of the activity distribution in normal mice. The algorithm may be applied using different tracers, in transgenic models that affect myocardial uptake, or in different species provided there is sufficient image quality and similar contrast between the myocardium and surrounding structures.

Model-based sensor-less wavefront aberration correction in optical coherence tomography.

PubMed

Verstraete, Hans R G W; Wahls, Sander; Kalkman, Jeroen; Verhaegen, Michel

2015-12-15

Several sensor-less wavefront aberration correction methods that correct nonlinear wavefront aberrations by maximizing the optical coherence tomography (OCT) signal are tested on an OCT setup. A conventional coordinate search method is compared to two model-based optimization methods. The first model-based method takes advantage of the well-known optimization algorithm (NEWUOA) and utilizes a quadratic model. The second model-based method (DONE) is new and utilizes a random multidimensional Fourier-basis expansion. The model-based algorithms achieve lower wavefront errors with up to ten times fewer measurements. Furthermore, the newly proposed DONE method outperforms the NEWUOA method significantly. The DONE algorithm is tested on OCT images and shows a significantly improved image quality.

Statistical simplex approach to primary and secondary color correction in thick lens assemblies

NASA Astrophysics Data System (ADS)

Ament, Shelby D. V.; Pfisterer, Richard

2017-11-01

A glass selection optimization algorithm is developed for primary and secondary color correction in thick lens systems. The approach is based on the downhill simplex method, and requires manipulation of the surface color equations to obtain a single glass-dependent parameter for each lens element. Linear correlation is used to relate this parameter to all other glass-dependent variables. The algorithm provides a statistical distribution of Abbe numbers for each element in the system. Examples of several lenses, from 2-element to 6-element systems, are performed to verify this approach. The optimization algorithm proposed is capable of finding glass solutions with high color correction without requiring an exhaustive search of the glass catalog.

Network Modeling and Energy-Efficiency Optimization for Advanced Machine-to-Machine Sensor Networks

PubMed Central

Jung, Sungmo; Kim, Jong Hyun; Kim, Seoksoo

2012-01-01

Wireless machine-to-machine sensor networks with multiple radio interfaces are expected to have several advantages, including high spatial scalability, low event detection latency, and low energy consumption. Here, we propose a network model design method involving network approximation and an optimized multi-tiered clustering algorithm that maximizes node lifespan by minimizing energy consumption in a non-uniformly distributed network. Simulation results show that the cluster scales and network parameters determined with the proposed method facilitate a more efficient performance compared to existing methods. PMID:23202190

An Novel Architecture of Large-scale Communication in IOT

NASA Astrophysics Data System (ADS)

Ma, Wubin; Deng, Su; Huang, Hongbin

2018-03-01

In recent years, many scholars have done a great deal of research on the development of Internet of Things and networked physical systems. However, few people have made the detailed visualization of the large-scale communications architecture in the IOT. In fact, the non-uniform technology between IPv6 and access points has led to a lack of broad principles of large-scale communications architectures. Therefore, this paper presents the Uni-IPv6 Access and Information Exchange Method (UAIEM), a new architecture and algorithm that addresses large-scale communications in the IOT.

Supersonic Mass Flux Measurements via Tunable Diode Laser Absorption and Non-Uniform Flow Modeling

NASA Technical Reports Server (NTRS)

Chang, Leyen S.; Strand, Christopher L.; Jeffries, Jay B.; Hanson, Ronald K.; Diskin, Glenn S.; Gaffney, Richard L.; Capriotti, Diego P.

2011-01-01

Measurements of mass flux are obtained in a vitiated supersonic ground test facility using a sensor based on line-of-sight (LOS) diode laser absorption of water vapor. Mass flux is determined from the product of measured velocity and density. The relative Doppler shift of an absorption transition for beams directed upstream and downstream in the flow is used to measure velocity. Temperature is determined from the ratio of absorption signals of two transitions (lambda(sub 1)=1349 nm and lambda(sub 2)=1341.5 nm) and is coupled with a facility pressure measurement to obtain density. The sensor exploits wavelength-modulation spectroscopy with second-harmonic detection (WMS-2f) for large signal-to-noise ratios and normalization with the 1f signal for rejection of non-absorption related transmission fluctuations. The sensor line-of-sight is translated both vertically and horizontally across the test section for spatially-resolved measurements. Time-resolved measurements of mass flux are used to assess the stability of flow conditions produced by the facility. Measurements of mass flux are within 1.5% of the value obtained using a facility predictive code. The distortion of the WMS lineshape caused by boundary layers along the laser line-of-sight is examined and the subsequent effect on the measured velocity is discussed. A method for correcting measured velocities for flow non-uniformities is introduced and application of this correction brings measured velocities within 4 m/s of the predicted value in a 1630 m/s flow.

Hybrid wavefront sensing and image correction algorithm for imaging through turbulent media

NASA Astrophysics Data System (ADS)

Wu, Chensheng; Robertson Rzasa, John; Ko, Jonathan; Davis, Christopher C.

2017-09-01

It is well known that passive image correction of turbulence distortions often involves using geometry-dependent deconvolution algorithms. On the other hand, active imaging techniques using adaptive optic correction should use the distorted wavefront information for guidance. Our work shows that a hybrid hardware-software approach is possible to obtain accurate and highly detailed images through turbulent media. The processing algorithm also takes much fewer iteration steps in comparison with conventional image processing algorithms. In our proposed approach, a plenoptic sensor is used as a wavefront sensor to guide post-stage image correction on a high-definition zoomable camera. Conversely, we show that given the ground truth of the highly detailed image and the plenoptic imaging result, we can generate an accurate prediction of the blurred image on a traditional zoomable camera. Similarly, the ground truth combined with the blurred image from the zoomable camera would provide the wavefront conditions. In application, our hybrid approach can be used as an effective way to conduct object recognition in a turbulent environment where the target has been significantly distorted or is even unrecognizable.

An online ID identification system for liquefied-gas cylinder plant

NASA Astrophysics Data System (ADS)

He, Jin; Ding, Zhenwen; Han, Lei; Zhang, Hao

2017-11-01

An automatic ID identification system for gas cylinders' online production was developed based on the production conditions and requirements of the Technical Committee for Standardization of Gas Cylinders. A cylinder ID image acquisition system was designed to improve the image contrast of ID regions on gas cylinders against the background. Then the ID digits region was located by the CNN template matching algorithm. Following that, an adaptive threshold method based on the analysis of local average grey value and standard deviation was proposed to overcome defects of non-uniform background in the segmentation results. To improve the single digit identification accuracy, two BP neural networks were trained respectively for the identification of all digits and the easily confusable digits. If the single digit was classified as one of confusable digits by the former BP neural network, it was further tested by the later one, and the later result was taken as the final identification result of this single digit. At last, the majority voting was adopted to decide the final identification result for the 6-digit cylinder ID. The developed system was installed on a production line of a liquefied-petroleum-gas cylinder plant and worked in parallel with the existing weighing step on the line. Through the field test, the correct identification rate for single ID digit was 94.73%, and none of the tested 2000 cylinder ID was misclassified through the majority voting.

A new algorithm for attitude-independent magnetometer calibration

NASA Technical Reports Server (NTRS)

Alonso, Roberto; Shuster, Malcolm D.

1994-01-01

A new algorithm is developed for inflight magnetometer bias determination without knowledge of the attitude. This algorithm combines the fast convergence of a heuristic algorithm currently in use with the correct treatment of the statistics and without discarding data. The algorithm performance is examined using simulated data and compared with previous algorithms.

SIMPLIFIED PRACTICAL TEST METHOD FOR PORTABLE DOSE METERS USING SEVERAL SEALED RADIOACTIVE SOURCES.

PubMed

Mikamoto, Takahiro; Yamada, Takahiro; Kurosawa, Tadahiro

2016-09-01

Sealed radioactive sources which have small activity were employed for the determination of response and tests for non-linearity and energy dependence of detector responses. Close source-to-detector geometry (at 0.3 m or less) was employed to practical tests for portable dose meters to accumulate statistically sufficient ionizing currents. Difference between response in the present experimentally studied field and in the reference field complied with ISO 4037 due to non-uniformity of radiation fluence at close geometry was corrected by use of Monte Carlo simulation. As a consequence, corrected results were consistent with the results obtained in the ISO 4037 reference field within their uncertainties. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

NEEDS - Information Adaptive System

NASA Technical Reports Server (NTRS)

Kelly, W. L.; Benz, H. F.; Meredith, B. D.

1980-01-01

The Information Adaptive System (IAS) is an element of the NASA End-to-End Data System (NEEDS) Phase II and is focused toward onboard image processing. The IAS is a data preprocessing system which is closely coupled to the sensor system. Some of the functions planned for the IAS include sensor response nonuniformity correction, geometric correction, data set selection, data formatting, packetization, and adaptive system control. The inclusion of these sensor data preprocessing functions onboard the spacecraft will significantly improve the extraction of information from the sensor data in a timely and cost effective manner, and provide the opportunity to design sensor systems which can be reconfigured in near real-time for optimum performance. The purpose of this paper is to present the preliminary design of the IAS and the plans for its development.

The Pointing Self-calibration Algorithm for Aperture Synthesis Radio Telescopes

NASA Astrophysics Data System (ADS)

Bhatnagar, S.; Cornwell, T. J.

2017-11-01

This paper is concerned with algorithms for calibration of direction-dependent effects (DDE) in aperture synthesis radio telescopes (ASRT). After correction of direction-independent effects (DIE) using self-calibration, imaging performance can be limited by the imprecise knowledge of the forward gain of the elements in the array. In general, the forward gain pattern is directionally dependent and varies with time due to a number of reasons. Some factors, such as rotation of the primary beam with Parallactic Angle for Azimuth-Elevation mount antennas are known a priori. Some, such as antenna pointing errors and structural deformation/projection effects for aperture-array elements cannot be measured a priori. Thus, in addition to algorithms to correct for DD effects known a priori, algorithms to solve for DD gains are required for high dynamic range imaging. Here, we discuss a mathematical framework for antenna-based DDE calibration algorithms and show that this framework leads to computationally efficient optimal algorithms that scale well in a parallel computing environment. As an example of an antenna-based DD calibration algorithm, we demonstrate the Pointing SelfCal (PSC) algorithm to solve for the antenna pointing errors. Our analysis show that the sensitivity of modern ASRT is sufficient to solve for antenna pointing errors and other DD effects. We also discuss the use of the PSC algorithm in real-time calibration systems and extensions for antenna Shape SelfCal algorithm for real-time tracking and corrections for pointing offsets and changes in antenna shape.

The Pointing Self-calibration Algorithm for Aperture Synthesis Radio Telescopes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bhatnagar, S.; Cornwell, T. J., E-mail: sbhatnag@nrao.edu

This paper is concerned with algorithms for calibration of direction-dependent effects (DDE) in aperture synthesis radio telescopes (ASRT). After correction of direction-independent effects (DIE) using self-calibration, imaging performance can be limited by the imprecise knowledge of the forward gain of the elements in the array. In general, the forward gain pattern is directionally dependent and varies with time due to a number of reasons. Some factors, such as rotation of the primary beam with Parallactic Angle for Azimuth–Elevation mount antennas are known a priori. Some, such as antenna pointing errors and structural deformation/projection effects for aperture-array elements cannot be measuredmore » a priori. Thus, in addition to algorithms to correct for DD effects known a priori, algorithms to solve for DD gains are required for high dynamic range imaging. Here, we discuss a mathematical framework for antenna-based DDE calibration algorithms and show that this framework leads to computationally efficient optimal algorithms that scale well in a parallel computing environment. As an example of an antenna-based DD calibration algorithm, we demonstrate the Pointing SelfCal (PSC) algorithm to solve for the antenna pointing errors. Our analysis show that the sensitivity of modern ASRT is sufficient to solve for antenna pointing errors and other DD effects. We also discuss the use of the PSC algorithm in real-time calibration systems and extensions for antenna Shape SelfCal algorithm for real-time tracking and corrections for pointing offsets and changes in antenna shape.« less